Temporal and spatial variation in habitat characteristics of Tilefish (Lopholatilus Chamaeleonticeps) off the east coast of Florida

USGS Publications Warehouse

Able, Kenneth W.; Grimes, Churchill B.; Jones, Robert; Twichell, David C.

1993-01-01

The tilefish, Lopholatilus chamaeleonticeps, constructs burrows in carbonate sediments off the central east coast of Florida at similar temperatures (8.6-15.4°C) and in similar sediment textures (high proportion of silts and clays) to conspecifics in the Mid-Atlantic Bight. The depths at which we observed tile fish off Florida (150-290 m), based on submersible observations and sidescan sonar operations during 1983 and 1984, were similar to those recorded in 1975-1977 (137-266 m) before the inception of the directed fishery. Both are similar to the range observed in the Mid-Atlantic Bight although tilefish there can be found at shallower and slightly deeper depths (80-305 m). The largest burrows off Florida (1.5-m diameter) were smaller than those observed in the Mid-Atlantic Bight (up to 5 m). The behavior of tile fish around the burrow and the invertebrates and fishes co-inhabiting the burrows off Florida are nearly identical to those in the Mid-Atlantic Bight. Despite the relatively narrow annual temperature range observed off Florida, abrupt changes in temperatures (+6°C) occurred over a 48-h period based on thermograph records. Our observations, and those of others from several areas along the U.S. east coast, suggest that this species probably constructs burrows throughout its geographic range, and that temperature and sediment composition largely determine its distribution. Exclusion experiments off Florida, along with prior removal experiments in the Mid-Atlantic Bight, indicate that tilefish construct and maintain the burrows.

Similar burrow architecture of three arid-zone scorpion species implies similar ecological function.

PubMed

Adams, Amanda M; Marais, Eugene; Turner, J Scott; Prendini, Lorenzo; Pinshow, Berry

2016-08-01

Many animals reside in burrows that may serve as refuges from predators and adverse environmental conditions. Burrow design varies widely among and within taxa, and these structures are adaptive, fulfilling physiological (and other) functions. We examined the burrow architecture of three scorpion species of the family Scorpionidae: Scorpio palmatus from the Negev desert, Israel; Opistophthalmus setifrons, from the Central Highlands, Namibia; and Opistophthalmus wahlbergii from the Kalahari desert, Namibia. We hypothesized that burrow structure maintains temperature and soil moisture conditions optimal for the behavior and physiology of the scorpion. Casts of burrows, poured in situ with molten aluminum, were scanned in 3D to quantify burrow structure. Three architectural features were common to the burrows of all species: (1) a horizontal platform near the ground surface, long enough to accommodate the scorpion, located just below the entrance, 2-5 cm under the surface, which may provide a safe place where the scorpion can monitor the presence of potential prey, predators, and mates and where the scorpion warms up before foraging; (2) at least two bends that might deter incursion by predators and may reduce convective ventilation, thereby maintaining relatively high humidity and low temperature; and (3) an enlarged terminal chamber to a depth at which temperatures are almost constant (±2-4 °C). These common features among the burrows of three different species suggest that they are important for regulating the physical environment of their inhabitants and that burrows are part of scorpions' "extended physiology" (sensu Turner, Physiol Biochem Zool 74:798-822, 2000).

Similar burrow architecture of three arid-zone scorpion species implies similar ecological function

NASA Astrophysics Data System (ADS)

Adams, Amanda M.; Marais, Eugene; Turner, J. Scott; Prendini, Lorenzo; Pinshow, Berry

2016-08-01

Many animals reside in burrows that may serve as refuges from predators and adverse environmental conditions. Burrow design varies widely among and within taxa, and these structures are adaptive, fulfilling physiological (and other) functions. We examined the burrow architecture of three scorpion species of the family Scorpionidae: Scorpio palmatus from the Negev desert, Israel; Opistophthalmus setifrons, from the Central Highlands, Namibia; and Opistophthalmus wahlbergii from the Kalahari desert, Namibia. We hypothesized that burrow structure maintains temperature and soil moisture conditions optimal for the behavior and physiology of the scorpion. Casts of burrows, poured in situ with molten aluminum, were scanned in 3D to quantify burrow structure. Three architectural features were common to the burrows of all species: (1) a horizontal platform near the ground surface, long enough to accommodate the scorpion, located just below the entrance, 2-5 cm under the surface, which may provide a safe place where the scorpion can monitor the presence of potential prey, predators, and mates and where the scorpion warms up before foraging; (2) at least two bends that might deter incursion by predators and may reduce convective ventilation, thereby maintaining relatively high humidity and low temperature; and (3) an enlarged terminal chamber to a depth at which temperatures are almost constant (±2-4 °C). These common features among the burrows of three different species suggest that they are important for regulating the physical environment of their inhabitants and that burrows are part of scorpions' "extended physiology" ( sensu Turner, Physiol Biochem Zool 74:798-822, 2000).

Burrowing Criteria and Burrowing Mode Adjustment in Bivalves to Varying Geoenvironmental Conditions in Intertidal Flats and Beaches

PubMed Central

Sassa, Shinji; Watabe, Yoichi; Yang, Soonbo; Kuwae, Tomohiro

2011-01-01

The response of bivalves to their abiotic environment has been widely studied in relation to hydroenvironmental conditions, sediment types and sediment grain sizes. However, the possible role of varying geoenvironmental conditions in their habitats remains poorly understood. Here, we show that the hardness of the surficial intertidal sediments varies by a factor of 20–50 due to suction development and suction-induced void state changes in the essentially saturated states of intertidal flats and beaches. We investigated the response of two species of bivalves, Ruditapes philippinarum and Donax semigranosus, in the laboratory by simulating such prevailing geoenvironmental conditions in the field. The experimental results demonstrate that the bivalve responses depended strongly on the varying geoenvironmental conditions. Notably, both bivalves consistently shifted their burrowing modes, reducing the burrowing angle and burial depth, in response to increasing hardness, to compensate for the excessive energy required for burrowing, as explained by a proposed conceptual model. This burrowing mode adjustment was accompanied by two burrowing criteria below or above which the bivalves accomplished vertical burrowing or failed to burrow, respectively. The suitable and fatal conditions differed markedly with species and shell lengths. The acute sensitivities of the observed bivalve responses to geoenvironmental changes revealed two distinctive mechanisms accounting for the adult–juvenile spatial distributions of Ruditapes philippinarum and the behavioral adaptation to a rapidly changing geoenvironment of Donax semigranosus. The present results may provide a rational basis by which to understand the ensuing, and to predict future, bivalve responses to geoenvironmental changes in intertidal zones. PMID:21957474

Burrowing behaviour of robotic bivalves with synthetic morphologies.

PubMed

Germann, D P; Carbajal, J P

2013-12-01

Several bivalve species burrow into sandy sediments to reach their living position. There are many hypotheses concerning the functional morphology of the bivalve shell for burrowing. Observational studies are limited and often qualitative and should be complemented by a synthetic approach mimicking the burrowing process using a robotic emulation. In this paper we present a simple mechatronic set-up to mimic the burrowing behaviour of bivalves. As environment we used water and quartz sand contained in a glass tank. Bivalve shells were mathematically modelled on the computer and then materialized using a 3D printer. The burrowing motion of the shells was induced by two external linear motors. Preliminary experiments did not expose any artefacts introduced to the burrowing process by the set-up. We tested effects of shell size, shape and surface sculpturing on the burrowing performance. Neither the typical bivalve shape nor surface sculpture did have a clear positive effect on burrowing depth in the performed experiments. We argue that the presented method is a valid and promising approach to investigate the functional morphology of bivalve shells and should be improved and extended in future studies. In contrast to the observation of living bivalves, our approach offers complete control over the parameters defining shell morphology and motion pattern. The technical set-up allows the systematic variation of all parameters to quantify their effects. The major drawback of the built set-up was that the reliability and significance of the results was limited by the lack of an optimal technique to standardize the sediment state before experiments.

Habitat selection by two species of burrowing mayfly nymphs in the Les Cheneaux Islands region of northern Lake Huron

USGS Publications Warehouse

Blouin, Marc A.; Hudson, Patrick; Chriscinske, Margret

2004-01-01

This study focused primarily on the habitat preferences of Hexagenia limbata andEphemera simulans, two species prevalent in northern Lake Huron, to gain a better understanding of the key components that determined their distribution and abundance. Both species preferred habitats based upon depth and sediment type. In addition, the burrowing activity of H. limbata was examined using in-situ, underwater sampling techniques specifically designed for the study. SCUBA divers made resin casts and took clear sediment cores in order to study how the burrow densities of H. limbata related to the sediment: water volume ratios. H. limbata contributed to the bioturbation and sediment porosity in specific, fine-sediment habitats. Younger age classes of this species utilized the burrows of their larger cohorts, an adaptation that could allow for energy savings and optimized growth.

Facies implications of Trichichnus and Chondrites in turbidites and hemipelagites, Marnoso-arenacea Formation (Miocene), northern Apennines, Italy

DOE Office of Scientific and Technical Information (OSTI.GOV)

McBride, E.F.; Picard, M.D.

Trichichnus, a thread-like burrow possibly the work of sipunculan worms, is widespread in Bouma E (turbidite claystone) and H (hemipelagic claystone) layers and some thin turbidite sandstone beds in basin-plain and outer fan-lobe deposits of the Marnoso-arenacea Formation. Trichichnus closely resembles that described elsewhere in chalk and marlstone, although the burrows are smaller (mean diameter=0.13 mm) and burrow curvature is tighter. Trichichnus fills are darker than the host claystone because of high organic content and disseminated pyrite. Any distinctive internal structure of the burrow wall or fill was destroyed by pyrite growth. Trichichnus is most abundant in Bouma E layers,more » where burrow spacing ranges from 0.4 to 50 cm and burrows extend to depths of 160 cm. The Trichichnus maker commonly burrowed vertically down through E and D layers (clay and silt) and then horizontally on top of C layers (sand). The burrows also vertically penetrate Bouma C sandstone layers up to 6 cm thick, but they are rare in beds thicker than 3 cm. They are less abundant or not well displayed in H layers where Chondrites predominates. Trichichnus overprints Chondrites. Following deposition of the Contessa megaturbidite, which exceeds 9 m in thickness, the sediment surface was repopulated chiefly by Trichichnus and Chondrites producers. Trichichnus extends 160 cm below the top of the Contessa, whereas Chondrites extend only to 64 cm. This suggests a greater tolerance of Trichichnus makers to low in situ oxygen levels. The near absence of laminations in the E division of the Contessa megabed may be the result of Trichichnus burrows that were not pyritized and which lack textural identity.« less

Generation of sedimentary fabrics and facies by repetitive excavation and storm infilling of burrow networks Holocene of south Florida and Caicos Platform, B. W. I

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tedesco, L.P.; Wanless, H.R.

Excavation of deep, open burrow networks and subsequent infilling with sediment from the surface produces an entirely new sedimentary deposit and results in obliteration to severe diagenetic transformation of precursor depositional facies. Repetitive excavation and infilling is responsible for creating the preserved depositional facies of many marine deposits. Excavating burrowers occur from intertidal to abyssal depths, and are important throughout the Phanerozoic. The repetitive coupling of deep, open burrow excavation with subsequent storm sediment infilling of open burrow networks is a gradual process that ultimately results in the loss of the original deposit and the generation of new lithologies, fabricsmore » and facies. The new lithologies are produced in the subsurface and possess fabrics, textures and skeletal assemblages that are not a direct reflection of either precursor facies or the surficial depositional conditions. Sedimentary facies generated by repetitive burrow excavation and infilling commonly are massively bedded and generally are mottled skeletal packstones. Skeletal grains usually are well-preserved and coarser components are concentrated in burrow networks, pockets and patches. The coarse skeletal components of burrow-generated facies are a mixture of coarse bioclasts from the precursor facies and both the coarse and fine skeletal material introduced from the sediment surface. Many so-called bioturbated or massive facies may, in fact, be primary depositional facies generated in the subsurface and represent severe diagenetic transformation of originally deposited sequences. In addition, mudstones and wackestones mottled with packstone patches may record storm sedimentation.« less

Environmental Assessment: Black-Tailed Prairie Dog Management Cannon Air Force Base and Melrose Air Force Range, New Mexico

DTIC Science & Technology

2005-12-01

requirements are met by metabolizing grazed vegetation. Prairie dogs dig burrows to an average depth of 2-3 meters with some tunnels interconnecting with...the potential to impact non- target species such as mice, kangaroo rats, and some songbirds. Establishing control zones at CAFB and MAFR could not be...Gutierrezia sarothrae), and Russian thistle (Salsola iberica). Water requirements are met by metabolizing grazed vegetation. Prairie dogs dig burrows

Sedimentary organic matter distributions, burrowing activity, and biogeochemical cycling: Natural patterns and experimental artifacts

NASA Astrophysics Data System (ADS)

Michaud, Emma; Aller, Robert, C.; Stora, Georges

2010-11-01

The coupling between biogenic reworking activity and reactive organic matter patterns within deposits is poorly understood and often ignored. In this study, we examined how common experimental treatments of sediment affect the burrowing behavior of the polychaete Nephtys incisa and how these effects may interact with reactive organic matter distributions to alter diagenetic transport - reaction balances. Sediment and animals were recovered from a subtidal site in central Long Island Sound, USA. The upper 15 cm of the sediment was sectioned into sub-intervals, and each interval separately sieved and homogenized. Three initial distributions of sediment and organic substrate reactivity were setup in a series of microcosms: (1) a reconstituted natural pattern with surface-derived sediment overlying sediment obtained from progressively deeper material to a depth of 15 cm (Natural); (2) a 15 cm thick sediment layer composed only of surface-derived sediment (Rich); and (3) a 15 cm thick layer composed of uniformally mixed sediment from the original 15 cm sediment profile (Averaged). The two last treatments are comparable to that used in microcosms in many previous studies of bioturbation and interspecific functional interaction experiments. Sediment grain size distributions were 97.5% silt-clay and showed no depth dependent patterns. Sediment porosity gradients were slightly altered by the treatments. Nepthys were reintroduced and aquariums were X-rayed regularly over 5 months to visualize and quantify spatial and temporal dynamics of burrows. The burrowing behaviour of adult populations having similar total biovolume, biomass, abundance, and individual sizes differed substantially as a function of treatment. Burrows in sediment with natural property gradients were much shallower and less dense than those in microcosms with altered gradients. The burrow volume/biovolume ratio was also lower in the substrate with natural organic reactivity gradients. Variation in food resources or in sediment mechanical properties associated with treatments, the latter in part coupled to remineralization processes such as exopolymer production, may explain the burrowing responses. In addition to demonstrating how species may respond to physical sedimentation events (substrate homogenization) and patterns of reactive organic matter redistribution, these experiments suggest that infaunal species interactions in microcosms, including the absolute and relative fluxes of remineralized solutes, may be subject to artifacts depending on exactly how sediments are introduced experimentally. Nonlocal transport and cylinder microenvironment transport - reaction models readily demonstrate how the multiple interactions between burrowing patterns and remineralization rate distributions can alter relative flux balances, decomposition pathways, and time to steady state.

Mechanics and Energetics of Excavation by Burrowing Wolf Spiders, Geolycosa spp.

PubMed Central

Suter, Robert B.; Stratton, Gail E.; Miller, Patricia R.

2011-01-01

Burrowing wolf spiders, Geolycosa sp. (Araneae:Lycosidae), excavate vertical burrows and inhabit them throughout their lives or, in the case of males, until they mature and wander in search of mates. Three species: G. fatifera Kurata, G. missouriensis Banks, and G. rogersi Wallace were studied to understand how and at what expense the burrowing is accomplished. Normal and high-speed videography coupled with scanning electron microscopy revealed (a) that the convex surfaces of the two fangs, together, constitute the digging tool, (b) that boluses of soil are transported to the burrow entrance on the anterior surfaces of the chelicerae held there by the pedipalps, and (c) that each bolus is either incorporated into the growing turret or flung away, propelled by the forelegs. To elucidate the energetics of burrow construction, burrow volumes were calculated and then the costs associated with dislodging, elevating, and throwing the known volumes of soil were measured. A typical Geolycosa burrow, at a volume of 23.6 ± 2.0 ml and a depth of 13.2 ± 0.7 cm, required the removal of 918 boluses each weighing about 34 mg. The aggregate dislodging cost was close to 1.9 Joules in sand/sandy loam and 5.6 J in clayey subsoil, the work against gravity necessary to raise all of the boluses to the surface was about 0.13 J, and the aggregate cost of flinging the boluses was close to 0.014 J. Assuming that the ratio of external work to metabolic cost of external work is between 0.20 and 0.25 in spiders, the real cost of burrow construction would be between 8 J and 29 J, depending primarily on soil type. This is a small but not negligible cost when placed in the context of reproductive effort: a single Geolycosa egg, dozens to hundreds of which are produced in a clutch, contains about 10 J. PMID:21529154

Behavioral Response of Corophium volutator to Shorebird Predation in the Upper Bay of Fundy, Canada

PubMed Central

MacDonald, Elizabeth C.; Frost, Elisabeth H.; MacNeil, Stephanie M.; Hamilton, Diana J.; Barbeau, Myriam A.

2014-01-01

Predator avoidance is an important component of predator-prey relationships and can affect prey availability for foraging animals. Each summer, the burrow-dwelling amphipod Corophium volutator is heavily preyed upon by Semipalmated Sandpipers (Calidris pusilla) on mudflats in the upper Bay of Fundy, Canada. We conducted three complementary studies to determine if adult C. volutator exhibit predator avoidance behavior in the presence of sandpipers. In a field experiment, we monitored vertical distribution of C. volutator adults in bird exclosures and adjacent control plots before sandpipers arrived and during their stopover. We also made polymer resin casts of C. volutator burrows in the field throughout the summer. Finally, we simulated shorebird pecking in a lab experiment and observed C. volutator behavior in their burrows. C. volutator adults were generally distributed deeper in the sediment later in the summer (after sandpipers arrived). In August, this response was detectably stronger in areas exposed to bird predation than in bird exclosures. During peak predator abundance, many C. volutator adults were beyond the reach of feeding sandpipers (>1.5 cm deep). However, burrow depth did not change significantly throughout the summer. Detailed behavioral observations indicated that C. volutator spent more time at the bottom of their burrow when exposed to a simulated predator compared to controls. This observed redistribution suggests that C. volutator adults move deeper into their burrows as an anti-predator response to the presence of sandpipers. This work has implications for predators that feed on burrow-dwelling invertebrates in soft-sediment ecosystems, as density may not accurately estimate prey availability. PMID:25354218

Effects of ghost shrimp on zinc and cadmium in sediments from Tampa Bay, FL

USGS Publications Warehouse

Klerks, P.L.; Felder, D.L.; Strasser, K.; Swarzenski, P.W.

2007-01-01

This study investigated the effects that ghost shrimp have on the distribution of metals in sediment. We measured levels of HNO3-extractable zinc and cadmium in surface sediment, in ghost shrimp burrow walls and in sediment ejected by the ghost shrimp from their burrows, at five sandy intertidal sites in Tampa Bay. Ghost shrimp densities and their rate of sediment ejection were also quantified, as were sediment organic content and silt + clay content. Densities of ghost shrimp (Sergio trilobata and Lepidophthalmus louisianensis) averaged 33/m2 at our sites, and they ejected sediment at an average rate of 28 g/burrow/day. Levels of both Zn and Cd were significantly higher in burrow walls than in surface sediments. Sediment ejected by the shrimp from their burrows had elevated levels of Zn (relative to surface sediments) at one of the sites. Sediment organic content and silt + clay content were higher in burrow-wall sediments than in ejected sediment, which in turn tended to have values above those of surface sediments. Differences in levels of HNO3-extractable Zn and Cd among sediment types may be a consequence of these sediments differing in other physiochemical characteristics, though the differences in metal levels remained statistically significant for some sites after correcting for differences in organic content and silt + clay content. We conclude that the presence of ghost shrimp burrows contributes to spatial heterogeneity of sedimentary metal levels, while the ghost shrimp bioturbation results in a significant flux of metals to the sediment surface and is expected to decrease heterogeneity of metal levels in sedimentary depth profiles.

A new macrofaunal limit in the deep biosphere revealed by extreme burrow depths in ancient sediments.

PubMed

Cobain, S L; Hodgson, D M; Peakall, J; Wignall, P B; Cobain, M R D

2018-01-10

Macrofauna is known to inhabit the top few 10s cm of marine sediments, with rare burrows up to two metres below the seabed. Here, we provide evidence from deep-water Permian strata for a previously unrecognised habitat up to at least 8 metres below the sediment-water interface. Infaunal organisms exploited networks of forcibly injected sand below the seabed, forming living traces and reworking sediment. This is the first record that shows sediment injections are responsible for hosting macrofaunal life metres below the contemporaneous seabed. In addition, given the widespread occurrence of thick sandy successions that accumulate in deep-water settings, macrofauna living in the deep biosphere are likely much more prevalent than considered previously. These findings should influence future sampling strategies to better constrain the depth range of infaunal animals living in modern deep-sea sands. One Sentence Summary: The living depth of infaunal macrofauna is shown to reach at least 8 metres in new habitats associated with sand injections.

Depth of the biologically active zone in upland habitats at the Hanford Site, Washington: Implications for remediation and ecological risk management.

PubMed

Sample, Bradley E; Lowe, John; Seeley, Paul; Markin, Melanie; McCarthy, Chris; Hansen, Jim; Aly, Alaa H

2015-01-01

Soil invertebrates, mammals, and plants penetrate and exploit the surface soil layer (i.e., the biologically active zone) to varying depths. As the US Department of Energy remediates radioactive and hazardous wastes in soil at the Hanford Site, a site-specific definition of the biologically active zone is needed to identify the depth to which remedial actions should be taken to protect the environment and avoid excessive cleanup expenditures. This definition may then be considered in developing a point of compliance for remediation in accordance with existing regulations. Under the State of Washington Model Toxic Control Act (MTCA), the standard point of compliance for soil cleanup levels with unrestricted land use is 457 cm (15 ft) below ground surface. When institutional controls are required to control excavations to protect people, MTCA allows a conditional point of compliance to protect biological resources based on the depth of the biologically active zone. This study was undertaken to identify and bound the biologically active zone based on ecological resources present at the Hanford Site. Primary data were identified describing the depths to which ants, mammals, and plants may exploit the surface soil column at the Hanford Site and other comparable locations. The maximum depth observed for harvester ants (Pogonomyrmex spp.) was 270 cm (8.9 ft), with only trivial excavation below 244 cm (8 ft). Badgers (Taxidea taxus) are the deepest burrowing mammal at the Hanford Site, with maximum burrow depths of 230 cm (7.6 ft); all other mammals did not burrow below 122 cm (4 ft). Shrubs are the deepest rooting plants with rooting depths to 300 cm (9.8 ft) for antelope bitterbrush (Purshia tridentata). The 2 most abundant shrub species did not have roots deeper than 250 cm (8.2 ft). The deepest rooted forb had a maximum root depth of 240 cm (7.9 ft). All other forbs and grasses had rooting depths of 200 cm (6.6 ft) or less. These data indicate that the biologically active soil zone in the Hanford Central Plateau does not exceed 300 cm (9.8 ft), the maximum rooting depth for the deepest rooting plant. The maximum depth at which most other plant and animal species occur is substantially shallower. Spatial distribution and density of burrows and roots over depths were also evaluated. Although maximum excavation by harvester ants is 270 cm (8.9 ft), trivial volume of soil is excavated below 150 cm (∼5 ft). Maximum rooting depths for all grasses, forbs, and the most abundant and deepest rooting shrubs are 300 cm (9.8 ft) or less. Most root biomass (>50-80%) is concentrated in the top 100 cm (3.3 ft), whereas at the maximum depth (9.8 ft), only trace root biomass is present. Available data suggest a limited likelihood for significant transport of contaminants to the surface by plants at or below 244 cm (8 ft), and suggest that virtually all plants or animal species occurring on the Central Plateau have a negligible likelihood for transporting soil contaminants to the surface from depths at or below 305 cm (10 ft). © 2014 SETAC.

Two-dimensional pH distributions and dynamics in bioturbated marine sediments

NASA Astrophysics Data System (ADS)

Zhu, Qingzhi; Aller, Robert C.; Fan, Yanzhen

2006-10-01

The seafloor is the site of intense biogeochemical and mineral dissolution-precipitation reactions which generate strong gradients in pH near the sediment-overlying water interface. These gradients are usually measured in one-dimension vertically with depth. Two-dimensional pH distributions in marine sediments were examined at high resolution (65 × 65 μm pixel) and analytical precision over areas of ˜150 to 225 cm 2 using a newly developed pH planar fluorosensor. Dramatic three-dimensional gradients, complex heterogeneity, and dynamic changes of pH occur in the surficial zone of deposits inhabited by macrofauna. pH can vary by ±2 units horizontally as well as vertically over millimeter scales. pH minima zones often form in association with redoxclines within a few millimeters of inner burrow walls, and become more pronounced with time if burrows remain stable and irrigated for extended periods. Microenvironmental pH minima also form locally around decaying biomass and relict burrow tracks, and dissipate with time (˜5 d). H + concentrations and fluxes in sandy mud show complex acid-base reaction distributions with net H + fluxes around burrows up to ˜12 nmol cm -2 d -1 and maximum net reaction rates varying between -90 (consumption) to 120 (production) μM d -1 (˜90 nmol cm -1 d -1 burrow length). Acid producing zones that surround irrigated burrows are largely balanced by acid titration zones along inner burrow walls and outer radial boundaries. The geometry and scaling of pH microenvironments are functions of diagenetic reaction rates and three-dimensional transport patterns determined by sediment properties, such as diffusive tortuosity, and by benthic community characteristics such as the abundance, mobility, and size of infauna. Previously, undocumented biogeochemical phenomena such as low pH regions associated with in-filled relict biogenic structures and burrowing tracks are readily demonstrated by two-dimensional and time-dependent images of pH and sedimentary structure.

Using ground penetrating radar in levee assessment to detect small scale animal burrows

NASA Astrophysics Data System (ADS)

Chlaib, Hussein K.; Mahdi, Hanan; Al-Shukri, Haydar; Su, Mehmet M.; Catakli, Aycan; Abd, Najah

2014-04-01

Levees are civil engineering structures built to protect human lives, property, and agricultural lands during flood events. To keep these important structures in a safe condition, continuous monitoring must be performed regularly and thoroughly. Small rodent burrows are one of the major defects within levees; however, their early detection and repair helps in protecting levees during flooding events. A set of laboratory experiments was conducted to analyze the polarity change in GPR signals in the presence of subsurface voids and water-filled cavities. Ground Penetrating Radar (GPR) surveys using multi frequency antennas (400 MHz and 900 MHz) were conducted along an 875 meter section of the Lollie Levee near Conway, Arkansas, USA, to assess the levee's structural integrity. Many subsurface animal burrows, water-filled cavities, clay clasts, and metallic objects were investigated and identified. These anomalies were located at different depths and have different sizes. To ground truth the observations, hand dug trenches were excavated to confirm several anomalies. Results show an excellent match between GPR interpreted anomalies and the observed features. In-situ dielectric constant measurements were used to calculate the feature depths. The results of this research show that the 900 MHz antenna has more advantages over the 400 MHz antenna.

The influence of small-mammal burrowing activity on water storage at the Hanford Site

DOE Office of Scientific and Technical Information (OSTI.GOV)

Landeen, D.S.

This paper summarizes the activities that were conducted in support of the long-term surface barrier development program by Westinghouse Hanford Company to determine the degree that small-mammal burrow systems affect the loss or retention of water in the soils at the Hanford Site in Washington state. An animal intrusion lysimeter facility was constructed, consisting of two outer boxes buried at grade, which served as receptacles for six animal intrusion lysimeters. Small burrowing animals common the Hanford Site were introduced over a 3- to 4-month period. Supplemental precipitation was added monthly to three of the lysimeters with a rainfall simulator (rainulator).more » Information collected from the five tests indicated that (1) during summer months, water was lost in all the lysimeters, including the supplemental precipitation added with the rainulator; and (2) during winter months, all lysimeters gained water. The data indicate little difference in the amount of water stored between control and animal lysimeters. The overall water loss was attributed to surface evaporation, a process that occurred equally in control and treatment lysimeters. Other causes of water loss are a result of (1) constant soil turnover and subsequent drying, and (2) burrow ventilation effects. This suggests that burrow systems will not contribute to any significant water storage at depth and, in fact, may enhance the removal of water from the soil.« less

First implementation of burrowing motions in dual-reciprocating drilling using an integrated actuation mechanism

NASA Astrophysics Data System (ADS)

Pitcher, Craig; Gao, Yang

2017-03-01

The dual-reciprocating drill (DRD) is a biologically-inspired low-mass alternative to traditional drilling techniques, using backwards-facing teethed halves to grip the surrounding substrate, generating a traction force that reduces the required overhead penetration force. Previous experiments using a proof-of-concept test bench have provided evidence as to the significant role of sideways movements and lateral forces in improving drilling performance. The system is also progressing to a first system prototype concept, in which an actuation mechanism is integrated within the drill heads. To experimentally determine the effect of lateral motions, a new internal actuation mechanism was developed to allow the inclusion of controlled sideways movements, resulting in the creation of the circular and diagonal burrowing motions. This paper presents an investigation into the performance of the reciprocation and burrowing motions by testing them in a planetary regolith simulant. Analysis of force sensor measurements has shown a relationship between the penetration and traction forces and the internal friction of the mechanism and depth achieved. These tests have also experimentally demonstrated the benefit of lateral motions in drilling performance, with both the burrowing mechanisms and drilling tests performed at an angle able to penetrate further than traditional vertical reciprocation, leading to the proposition of new burrowing and diagonal drilling mechanics. From this, a new fully integrated system prototype can be developed which incorporates lateral motions that can optimise the drilling performance.

Estimating the effect of burrowing shrimp on deep-sea sediment community oxygen consumption.

PubMed

Leduc, Daniel; Pilditch, Conrad A

2017-01-01

Sediment community oxygen consumption (SCOC) is a proxy for organic matter processing and thus provides a useful proxy of benthic ecosystem function. Oxygen uptake in deep-sea sediments is mainly driven by bacteria, and the direct contribution of benthic macro- and mega-infauna respiration is thought to be relatively modest. However, the main contribution of infaunal organisms to benthic respiration, particularly large burrowing organisms, is likely to be indirect and mainly driven by processes such as feeding and bioturbation that stimulate bacterial metabolism and promote the chemical oxidation of reduced solutes. Here, we estimate the direct and indirect contributions of burrowing shrimp ( Eucalastacus cf. torbeni ) to sediment community oxygen consumption based on incubations of sediment cores from 490 m depth on the continental slope of New Zealand. Results indicate that the presence of one shrimp in the sediment is responsible for an oxygen uptake rate of about 40 µmol d -1 , only 1% of which is estimated to be due to shrimp respiration. We estimate that the presence of ten burrowing shrimp m -2 of seabed would lead to an oxygen uptake comparable to current estimates of macro-infaunal community respiration on Chatham Rise based on allometric equations, and would increase total sediment community oxygen uptake by 14% compared to sediment without shrimp. Our findings suggest that oxygen consumption mediated by burrowing shrimp may be substantial in continental slope ecosystems.

Strain partitioning and deformation mode analysis of the normal faults at Red Mountain, Birmingham, Alabama

NASA Astrophysics Data System (ADS)

Wu, Schuman

1989-12-01

In a low-temperature environment, the thin-section scale rock-deformation mode is primarily a function of confining pressure and total strain at geological strain rates. A deformation mode diagram is constructed from published experimental data by plotting the deformation mode on a graph of total strain versus the confining pressure. Four deformation modes are shown on the diagram: extensional fracturing, mesoscopic faulting, incipient faulting, and uniform flow. By determining the total strain and the deformation mode of a naturally deformed sample, the confining pressure and hence the depth at which the rock was deformed can be evaluated. The method is applied to normal faults exposed on the gently dipping southeast limb of the Birmingham anticlinorium in the Red Mountain expressway cut in Birmingham, Alabama. Samples of the Ordovician Chickamauga Limestone within and adjacent to the faults contain brittle structures, including mesoscopic faults and veins, and ductile deformation features including calcite twins, intergranular and transgranular pressure solution, and deformed burrows. During compaction, a vertical shortening of about 45 to 80% in shale is indicated by deformed burrows and relative compaction of shale to burrows, about 6% in limestone by stylolites. The normal faults formed after the Ordovician rocks were consolidated because the faults and associated veins truncate the deformed burrows and stylolites, which truncate the calcite cement. A total strain of 2.0% was caused by mesoscopic faults during normal faulting. A later homogenous deformation, indicated by the calcite twins in veins, cement and fossil fragments, has its major principal shortening strain in the dip direction at a low angle (about 22°) to bedding. The strain magnitude is about 2.6%. By locating the observed data on the deformation mode diagram, it is found that the normal faulting characterized by brittle deformation occurred under low confining pressure (< 18 MPa) at shallow depth (< 800 m), and the homogenous horizontal compression characterized by uniform flow occurred under higher confining pressure (at least 60 MPa) at greater depth (> 2.5 km).

Assimilation and High Resolution Forecasts of Surface and Near Surface Conditions for the 2010 Vancouver Winter Olympic and Paralympic Games

NASA Astrophysics Data System (ADS)

Bernier, Natacha B.; Bélair, Stéphane; Bilodeau, Bernard; Tong, Linying

2014-01-01

A dynamical model was experimentally implemented to provide high resolution forecasts at points of interests in the 2010 Vancouver Olympics and Paralympics Region. In a first experiment, GEM-Surf, the near surface and land surface modeling system, is driven by operational atmospheric forecasts and used to refine the surface forecasts according to local surface conditions such as elevation and vegetation type. In this simple form, temperature and snow depth forecasts are improved mainly as a result of the better representation of real elevation. In a second experiment, screen level observations and operational atmospheric forecasts are blended to drive a continuous cycle of near surface and land surface hindcasts. Hindcasts of the previous day conditions are then regarded as today's optimized initial conditions. Hence, in this experiment, given observations are available, observation driven hindcasts continuously ensure that daily forecasts are issued from improved initial conditions. GEM-Surf forecasts obtained from improved short-range hindcasts produced using these better conditions result in improved snow depth forecasts. In a third experiment, assimilation of snow depth data is applied to further optimize GEM-Surf's initial conditions, in addition to the use of blended observations and forecasts for forcing. Results show that snow depth and summer temperature forecasts are further improved by the addition of snow depth data assimilation.

Soil thermal dynamics, snow cover, and frozen depth under five temperature treatments in an ombrotrophic bog: Constrained forecast with data assimilation: Forecast With Data Assimilation

DOE PAGES

Huang, Yuanyuan; Jiang, Jiang; Ma, Shuang; ...

2017-08-18

We report that accurate simulation of soil thermal dynamics is essential for realistic prediction of soil biogeochemical responses to climate change. To facilitate ecological forecasting at the Spruce and Peatland Responses Under Climatic and Environmental change site, we incorporated a soil temperature module into a Terrestrial ECOsystem (TECO) model by accounting for surface energy budget, snow dynamics, and heat transfer among soil layers and during freeze-thaw events. We conditioned TECO with detailed soil temperature and snow depth observations through data assimilation before the model was used for forecasting. The constrained model reproduced variations in observed temperature from different soil layers,more » the magnitude of snow depth, the timing of snowfall and snowmelt, and the range of frozen depth. The conditioned TECO forecasted probabilistic distributions of soil temperature dynamics in six soil layers, snow, and frozen depths under temperature treatments of +0.0, +2.25, +4.5, +6.75, and +9.0°C. Air warming caused stronger elevation in soil temperature during summer than winter due to winter snow and ice. And soil temperature increased more in shallow soil layers in summer in response to air warming. Whole ecosystem warming (peat + air warmings) generally reduced snow and frozen depths. The accuracy of forecasted snow and frozen depths relied on the precision of weather forcing. Uncertainty is smaller for forecasting soil temperature but large for snow and frozen depths. Lastly, timely and effective soil thermal forecast, constrained through data assimilation that combines process-based understanding and detailed observations, provides boundary conditions for better predictions of future biogeochemical cycles.« less

Soil thermal dynamics, snow cover, and frozen depth under five temperature treatments in an ombrotrophic bog: Constrained forecast with data assimilation: Forecast With Data Assimilation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Huang, Yuanyuan; Jiang, Jiang; Ma, Shuang

We report that accurate simulation of soil thermal dynamics is essential for realistic prediction of soil biogeochemical responses to climate change. To facilitate ecological forecasting at the Spruce and Peatland Responses Under Climatic and Environmental change site, we incorporated a soil temperature module into a Terrestrial ECOsystem (TECO) model by accounting for surface energy budget, snow dynamics, and heat transfer among soil layers and during freeze-thaw events. We conditioned TECO with detailed soil temperature and snow depth observations through data assimilation before the model was used for forecasting. The constrained model reproduced variations in observed temperature from different soil layers,more » the magnitude of snow depth, the timing of snowfall and snowmelt, and the range of frozen depth. The conditioned TECO forecasted probabilistic distributions of soil temperature dynamics in six soil layers, snow, and frozen depths under temperature treatments of +0.0, +2.25, +4.5, +6.75, and +9.0°C. Air warming caused stronger elevation in soil temperature during summer than winter due to winter snow and ice. And soil temperature increased more in shallow soil layers in summer in response to air warming. Whole ecosystem warming (peat + air warmings) generally reduced snow and frozen depths. The accuracy of forecasted snow and frozen depths relied on the precision of weather forcing. Uncertainty is smaller for forecasting soil temperature but large for snow and frozen depths. Lastly, timely and effective soil thermal forecast, constrained through data assimilation that combines process-based understanding and detailed observations, provides boundary conditions for better predictions of future biogeochemical cycles.« less

Under the weather?-The direct effects of climate warming on a threatened desert lizard are mediated by their activity phase and burrow system.

PubMed

Moore, Danae; Stow, Adam; Kearney, Michael Ray

2018-05-01

For ectotherms such as lizards, the importance of behavioural thermoregulation in avoiding thermal extremes is well-established and is increasingly acknowledged in modern studies of climate warming and its impacts. Less appreciated and understood are the buffering roles of retreat sites and activity phase, in part because of logistical challenges of studying below-ground activity. Burrowing and nocturnal activity are key behavioural adaptations that have enabled a diverse range of reptiles to survive extreme environmental temperatures within hot desert regions. Yet, the direct impact of recent global warming on activity potential has been hypothesised to have caused extinctions in desert lizards, including the Australian arid zone skink Liopholis kintorei. We test the relevance of this hypothesis through a detailed characterisation of the above- and below-ground thermal and hydric microclimates available to, and used by, L. kintorei. We integrate operative temperatures with observed body temperatures to construct daily activity budgets, including the inference of subterranean behaviour. We then assess the likelihood that contemporary and future local extinctions in this species, and those of similar burrowing habits, could be explained by the direct effects of warming on its activity budget and exposure to thermal extremes. We found that L. kintorei spent only 4% of its time active on the surface, primarily at dusk, and that overall potential surface activity will be increased, not restricted, with climate warming. The burrow system provides an exceptional buffer to current and future maximum extremes of temperature (≈40°C reduction from potential surface temperatures), and desiccation (burrows near 100% humidity). Therefore, any climate warming impacts on this species are likely to be indirect. Our findings reflect the general buffering capacity of underground microclimates, therefore, our conclusions for L. kintorei are more generally applicable to nocturnal and crepuscular ectotherms, and highlight the need to consider the buffering properties of retreat sites and activity phase when forecasting climate change impacts. © 2018 The Authors. Journal of Animal Ecology © 2018 British Ecological Society.

Bioturbation in a Declining Oxygen Environment, in situ Observations from Wormcam

PubMed Central

Sturdivant, S. Kersey; Díaz, Robert J.; Cutter, George R.

2012-01-01

Bioturbation, the displacement and mixing of sediment particles by fauna or flora, facilitates life supporting processes by increasing the quality of marine sediments. In the marine environment bioturbation is primarily mediated by infaunal organisms, which are susceptible to perturbations in their surrounding environment due to their sedentary life history traits. Of particular concern is hypoxia, dissolved oxygen (DO) concentrations ≤2.8 mg l−1, a prevalent and persistent problem that affects both pelagic and benthic fauna. A benthic observing system (Wormcam) consisting of a buoy, telemetering electronics, sediment profile camera, and water quality datasonde was developed and deployed in the Rappahannock River, VA, USA, in an area known to experience seasonal hypoxia from early spring to late fall. Wormcam transmitted a time series of in situ images and water quality data, to a website via wireless internet modem, for 5 months spanning normoxic and hypoxic periods. Hypoxia was found to significantly reduce bioturbation through reductions in burrow lengths, burrow production, and burrowing depth. Although infaunal activity was greatly reduced during hypoxic and near anoxic conditions, some individuals remained active. Low concentrations of DO in the water column limited bioturbation by infaunal burrowers and likely reduced redox cycling between aerobic and anaerobic states. This study emphasizes the importance of in situ observations for understanding how components of an ecosystem respond to hypoxia. PMID:22493701

Application of morphologic burrow interpretations to discern continental burrow architects: Lungfish or crayfish?

USGS Publications Warehouse

Hasiotis, Stephen T.; Mitchell, Charles E.; Dubiel, Russell R.

1993-01-01

A methodology for trace fossil identification using burrowing signatures is tested by evaluating ancient and modern lungfish and crayfish burrows and comparing them to previously undescribed burrows in a stratigraphic interval thought to contain both lungfish and crayfish burrows. Permian burrows that bear skeletal remains of the lungfish Gnathorhiza, from museum collections, were evaluated to identify unique burrow morphologies that could be used to distinguish lungfish from crayfish burrows when fossil remains are absent. The lungfish burrows were evaluated for details of the burrowing mechanism preserved in the burrow morphologies together forming burrowing signatures and were compared to new burrows in the Chinle Formation of western Colorado to test the methodology of using burrow signatures to identify unknown burrows.Permian lungfish aestivation burrows show simple, nearly vertical, unbranched architectures and relatively smooth surficial morphologies with characteristic quasi‐horizontal striae on the burrow walls and vertical striae on the bulbous terminus. Burrow lengths do not exceed 0.5 m. In contrast, modern and ancient crayfish burrows exhibit simple to highly complex architectures with highly textured surficial morphologies. Burrow lengths may reach 4 to 5 m.Burrow morphologies unlike those identified in Gnathorhiza aestivation burrows were found in four burrow groups from museum collections. Two of these groups exhibit simple architectures and horizontal striae that were greater in sinuosity and magnitude, respectively. One of these burrows contains the remains of Lysoro‐phus, but the burrow surface reveals no reliable surficial characteristics. It is not clear whether Lysorophustruly burrowed or merely occupied a pre‐existing structure. The other two groups exhibit surficial morphologies similar to those found on modern and ancient crayfish burrows and may provide evidence of freshwater crayfish in the Permian.Burrows from the Upper Triassic Chinle Formation in western Colorado exhibit simple to moderately complex architectural morphologies, ranging from predominantly vertical, unbranched, with little or no chamber development to predominantly vertical, few branches, and with minor chamber development. Surficial burrow morphologies are moderate to highly textured. The burrows have scrape marks, scratch marks, mud and lag‐liners, knobby surfaces, pleopod striae, and body impressions.Although no fossil remains of the burrowing organism were found within or associated with the Chinle burrows from western Colorado, the similarity of architectural and surficial burrow morphologies to those in the Chinle of Canyonlands, Utah and to modern crayfish burrows, clearly indicates that the Colorado burrows are the product of burrowing crayfish rather than lungfish. Evaluation of burrowing signatures preserved in the architectural and surficial burrow morphologies is a very useful tool to compare and contrast Chinle burrows from different regions on the Colorado Plateau. Documentation of crayfish burrows in the Chinle of Utah and Colorado strongly suggests that other large‐diameter Chinle burrows elsewhere on the Colorado Plateau and in stratigraphically equivalent units may also be the product of crayfish activity.

APPLICATION OF COMPUTER-AIDED TOMOGRAPHY TO VISUALIZE AND QUANTIFY BIOGENIC STRUCTURES IN MARINE SEDIMENTS

EPA Science Inventory

We used computer-aided tomography (CT) for 3D visualization and 2D analysis of

marine sediment cores from 3 stations (at 10, 75 and 118 m depths) with different environmental

impact. Biogenic structures such as tubes and burrows were quantified and compared among st...

Ichnofabrics and Facies in the Paleocene of Chicxulub: A Record of the Recovery of Life Post-Impact

NASA Astrophysics Data System (ADS)

Whalen, M. T.; O'Malley, K.; Lowery, C. M.; Rodriguez-Tovar, F. J.; Gulick, S. P. S.; Morgan, J. V.

2017-12-01

IODP/ICDP Expedition 364 recovered 829 m of core at Site M0077 including 110 m of post-impact, (hemi)pelagic Paleogene sedimentary rocks overlying the Chicxulub impact crater peak ring formed from suevite, melt rock, and granitic basement. The transition between suevite and Paleocene limestone (Unit 1F) is a remarkable fining upward package of gravel to sand-sized suevite (Unit 2A) overlain by the laminated carbonate-rich Unit 1G that records deposition of fine-grained material post-impact and contains a mix of Late Cretaceous and earliest Danian taxa. This study concentrates on the overlying Unit 1F. The ichnofabric index (ii, 1-6 indicating no bioturbation to complete homogenization), provides a semiquantitative estimate of burrow density to help assess the return of life to the crater. Unit 1F is 10 m thick with a sharp contact at the base of a green claystone (ii 2) that overlies Unit 1G. It consists of cm-dm interbedded blue-gray marlstone (ii 2) grading upward into gray to blue-gray wacke/packstone (ii 3-5). Contacts between facies are mostly gradational due to burrowing. The upper 3 m of the unit is a yellow-brown burrowed packstone (ii 4) intercalated with gray marlstone (ii 2). The uppermost 7.5 cm is calcite cemented with 1 cm wide burrows (ii 3-4) and fine to coarse sand size clasts including foraminifera. The upper surface of the unit is a hardground with an 2 Myr unconformity overlain by Eocene rocks. The first well-defined burrows occur in the upper 30 cm of Unit 1G. Unequivocal burrows (ii 2) that disturb sedimentary facies occur in overlying Unit 1F with values of 3-5 recorded in the overlying 10 cm indicating significant disruption of primary sedimentary structures. The iis in Unit 1F vary between 2 and 5 with rare laminated intervals without bioturbation (ii 1). Values of ii correlate well with facies changes, i.e. marlstones display lower iis than more carbonate-rich facies, implying a depth and/or redox control on burrower distribution. The ii data indicate that burrowers were re-established in the crater before the end of deposition of Unit 1G. The lowest Danian zone Pα is documented in the lowermost part of Unit 1F. Trace makers were thus active by the earliest Danian with an increase in abundance and diversity during the lower Danian, indicating a rapid and continuous return of benthic life to the crater.

ESTIMATING THE DISTRIBUTION OF HARVESTED ...

EPA Pesticide Factsheets

Habitat suitability models are used to forecast how environmental change may affect the abundance or distribution of species of interest. The development of habitat suitability models may be used to estimate the vulnerability of this valued ecosystem good to natural or anthropogenic stressors. Using natural history information, rule-based habitat suitability models were constructed in a GIS for two recreationally harvested bivalve species (cockles Clinocardium nuttallii; softshells Mya arenaria) common to NE Pacific estuaries (N. California to British Columbia). Tolerance limits of each species were evaluated with respect to four parameters that are easy to sample: salinity, depth, sediment grain size, and the presence of bioturbating burrowing shrimp and were determined through literature review. Spatially-explicit habitat maps were produced for Yaquina and Tillamook estuaries (Oregon) using environmental data from multiple studies ranging from 1960 to 2012. Suitability of a given location was ranked on a scale of 1-4 (lowest to highest) depending on the number of variables that fell within a bivalve’s tolerance limits. The models were tested by comparison of the distribution of each suitability class to the observed distribution of bivalves reported in benthic community studies (1996-2012). Results showed that the areas of highest habitat suitability (value=4) within our model contained the greatest proportion of bivalve observations and highest popula

Burrow Occupancy Patterns of the Western Burrowing Owl in Southern Nevada

DOE Office of Scientific and Technical Information (OSTI.GOV)

Paul D. Greger and Derek B. Hall

Understanding long-term patterns of burrow occupancy for the Western Burrowing Owl (Athene cunicularia hypugaea) is necessary for the conservation of this species, especially in arid, desert ecosystems where burrow occupancy data are lacking. Monthly burrow monitoring was conducted over a 4-year period (1997–2001) in southern Nevada to determine burrow occupancy patterns of Burrowing Owls and to evaluate the effects of burrow type and desert region on burrow occupancy. Burrow occupancy occurred year-round and was most consistent in the Transition region and tended to be lowest in the Mojave Desert region. Peak burrow occupancy occurred during March through May, followed bymore » a gradual decline in occupancy through the summer and fall until January and February, when occupancy was lowest. Occupancy was significantly higher at sites with both culvert and pipe burrows than at sites with earthen burrows in disturbed habitat or earthen burrows in natural habitat. Breeding-season occupancy was not significantly higher in wetter, cooler portions (e.g., Great Basin desert region) of the study area. Results suggest that occupancy is influenced by habitat features—such as suitable burrows in open areas with low vegetation—and climatic regime.« less

Deformational mass transport and invasive processes in soil evolution

NASA Technical Reports Server (NTRS)

Brimhall, George H.; Chadwick, Oliver A.; Lewis, Chris J.; Compston, William; Williams, Ian S.; Danti, Kathy J.; Dietrich, William E.; Power, Mary E.; Hendricks, David; Bratt, James

1992-01-01

Channels left in soil by decayed roots and burrowing animals allow organic and inorganic precipitates and detritus to move through soil from above, to depths at which the minuteness of pores restricts further passage. Consecutive translocation-and-root-growth phases stir the soil, constituting an invasive, dilatational process which generates cumulative strains. Below the depths thus affected, mineral dissolution by descending organic acids leads to internal collapse; this softened/condensed precursor horizon is then transformed into soil via biological activity that mixes and expands the evolving residuum through root and micropore-network invasion.

Priming effect in topsoil and subsoil induced by earthworm burrows

NASA Astrophysics Data System (ADS)

Thu, Duyen Hoang Thi

2017-04-01

Earthworms (Lumbricus terrestris L.) not only affect soil physics, but they also boost microbial activities and consequently important hotspots of microbial mediated carbon and C turnover through their burrowing activity. However, it is still unknown to which extend earthworms affect priming effect in top- and subsoil horizons. More labile C inputs in earthworm burrows were hypothesized to trigger higher priming of soil organic matter (SOM) decomposition compared to rhizosphere and bulk soil. Moreover, this effect was expected to be more pronounced in subsoil due to its greater C and nutrient limitation. To test these hypotheses, biopores and bulk soil were sampled from topsoil (0-30 cm) and two subsoil depths (45-75 and 75-105 cm). Additionally, rhizosphere samples were taken from the topsoil. Total organic C (Corg), total N (TN), total P (TP) and enzyme activities involved in C-, N-, and P-cycling (cellobiohydrolase, β-glucosidase, xylanase, chitinase, leucine aminopeptidase and phosphatase) were measured. Priming effects were calculated as the difference in SOM-derived CO2 from soil with or without 14C-labelled glucose addition. Enzyme activities in biopores were positively correlated with Corg, TN and TP, but in bulk soil this correlation was negative. The more frequent fresh and labile C inputs to biopores caused 4 to 20 time higher absolute priming of SOM turnover due to enzyme activities that were one order of magnitude higher than in bulk soil. In subsoil biopores, reduced labile C inputs and lower N availability stimulated priming twofold greater than in topsoil. In contrast, a positive priming effect in bulk soil was only detected at 75-105 cm depth. We conclude that earthworm burrows provide not only the linkage between top- and subsoil for C and nutrients, but strongly increase microbial activities and accelerate SOM turnover in subsoil, contributing to nutrient mobilization for roots and CO2 emission increase as a greenhouse gas. Additionally, the mechanisms of native SOM decomposition are distinct between topsoil and subsoil, which relies on the fresh C input and nutrient availability. Keywords: Priming effect; Earthworms; Organic matter decomposition; Biopores; Subsoil; Microbial hotspots.

Burrowing owl nesting productivity: A comparison between artificial and natural burrows on and off golf courses

USGS Publications Warehouse

Smith, M.D.; Conway, C.J.; Ellis, L.A.

2005-01-01

Burrowing owl (Athene cunicularia) populations are declining in many portions of their range, and lack of suitable nesting burrows is thought to be one reason for observed declines. Burrowing owls are attracted to golf courses because the birds generally nest and forage in short-grass, open areas, yet golf courses seldom have suitable nesting burrows. We examined the efficacy of installing artificial nesting burrows on golf courses as a way to help restore local burrowing owl populations. From 2001-2004 we monitored over 175 natural burrows off golf courses, 14 natural burrows on golf courses, 86 artificial burrows off golf courses, and 130 artificial burrows on golf courses. Owls located and used 8 of the 130 artificial burrows installed on golf courses (4 were used as nests). Owls selected burrows that were closer to existing natural burrows, farther from maintained areas (areas receiving turf maintenance by golf course staff), and farther from sprinkler heads. All 4 of the artificial burrows used as nests successfully fledged young, and annual site fidelity for owls nesting on golf courses was higher than for owls nesting off golf courses. However, annual fecundity of owls nesting on golf courses was lower than that of owls nesting off golf courses. If golf courses have sufficiently large nonmaintained areas and there are nesting owls nearby, course managers potentially can help in restoring local burrowing owl populations by installing artificial nesting burrows on the periphery of the course. However, the low fecundity on golf courses reported here should be more thoroughly examined before artificial burrows are used to attract owls to golf courses.

Nesting ecology of a population of Gopherus agassizii at a utility-scale wind energy facility in southern California

USGS Publications Warehouse

Ennen, Joshua R.; Lovich, Jeffrey E.; Meyer, Katherin P.; Bjurlin, Curtis; Arundel, Terence R.

2012-01-01

We investigated the annual nesting ecology of a population of Desert Tortoises (Gopherus agassizii) inhabiting a utility-scale renewable energy (USRE) facility in southern California and compared our results with populations inhabiting relatively undisturbed sites. In 2000, 15 radio-tracked females produced 29 clutches, and 24 nests were monitored to examine nest-site selection, nest predation, hatching success, date of emergence of hatchlings, and hatchling mass and carapace length. Overall, the nesting ecology of the population inhabiting the USRE facility was very similar to other populations of Desert Tortoises inhabiting relatively undisturbed habitats. Oviposition occurred from 12 May to 8 July, which was similar to other sites. Nest depths (11.1 cm), nest predation (12%), hatchling emergence date (7 August and 29 September), and hatchling morphometrics (i.e., MCL: 44.5 mm; mass: 23 g) were all within ranges reported in other populations. Unlike within other populations, we observed no relationship between hatchling size and either maternal body size or egg width. We found no evidence of females selecting for a particular burrow for oviposition of eggs based on environmental or anthropogenic variables. Most nests were located in or near burrows, and nest depth was greater for nests near the entrance than those deeper in the burrow. Although this study suggests that the nesting ecology of the Desert Tortoise population we studied was not adversely affected by the USRE facility, this relationship is only correlative because our study was not a before-after-control-impact (BACI) study, which would establish a cause and effect relationship. As pointed out in a recent review, BACI studies are critically needed to address the wildlife impacts of utility-scale renewable energy development.

76 FR 44547 - Endangered and Threatened Wildlife and Plants; 12-Month Finding on a Petition To List the Giant...

Federal Register 2010, 2011, 2012, 2013, 2014

2011-07-26

... worms live near the ground's surface and consume organic litter on and near the surface. Endogeic worms... upper layers of mineral soil, (2) consume organic material in the mineral soil or at the soil-litter... consisting of organic matter in varying stages of decomposition.'' He also states that deep burrow depths...

Forecasted Flood Depth Grids Providing Early Situational Awareness to FEMA during the 2017 Atlantic Hurricane Season

NASA Astrophysics Data System (ADS)

Jones, M.; Longenecker, H. E., III

2017-12-01

The 2017 hurricane season brought the unprecedented landfall of three Category 4 hurricanes (Harvey, Irma and Maria). FEMA is responsible for coordinating the federal response and recovery efforts for large disasters such as these. FEMA depends on timely and accurate depth grids to estimate hazard exposure, model damage assessments, plan flight paths for imagery acquisition, and prioritize response efforts. In order to produce riverine or coastal depth grids based on observed flooding, the methodology requires peak crest water levels at stream gauges, tide gauges, high water marks, and best-available elevation data. Because peak crest data isn't available until the apex of a flooding event and high water marks may take up to several weeks for field teams to collect for a large-scale flooding event, final observed depth grids are not available to FEMA until several days after a flood has begun to subside. Within the last decade NOAA's National Weather Service (NWS) has implemented the Advanced Hydrologic Prediction Service (AHPS), a web-based suite of accurate forecast products that provide hydrograph forecasts at over 3,500 stream gauge locations across the United States. These forecasts have been newly implemented into an automated depth grid script tool, using predicted instead of observed water levels, allowing FEMA access to flood hazard information up to 3 days prior to a flooding event. Water depths are calculated from the AHPS predicted flood stages and are interpolated at 100m spacing along NHD hydrolines within the basin of interest. A water surface elevation raster is generated from these water depths using an Inverse Distance Weighted interpolation. Then, elevation (USGS NED 30m) is subtracted from the water surface elevation raster so that the remaining values represent the depth of predicted flooding above the ground surface. This automated process requires minimal user input and produced forecasted depth grids that were comparable to post-event observed depth grids and remote sensing-derived flood extents for the 2017 hurricane season. These newly available forecasted models were used for pre-event response planning and early estimated hazard exposure counts, allowing FEMA to plan for and stand up operations several days sooner than previously possible.

Determinants of between-year burrow re-occupation in a colony of the European bee-eater Merops apiaster.

PubMed

Brust, Vera; Bastian, Hans-Valentin; Bastian, Anita; Schmoll, Tim

2015-08-01

Re-occupation of existing nesting burrows in the European bee-eater Merops apiaster has only rarely - and if so mostly anecdotically - been documented in the literature record, although such behavior would substantially save time and energy. In this study, we quantify burrow re-occupation in a German colony over a period of eleven years and identify ecological variables determining reuse probability. Of 179 recorded broods, 54% took place in a reused burrow and the overall probability that one of 75 individually recognized burrows would be reused in a given subsequent year was estimated as 26.4%. This indicates that between-year burrow reuse is a common behavior in the study colony which contrasts with findings from studies in other colonies. Furthermore, burrow re-occupation probability declined highly significantly with increasing age of the breeding wall. Statistical separation of within- and between-burrow effects of the age of the breeding wall revealed that a decline in re-occupation probability with individual burrow age was responsible for this and not a selective disappearance of burrows with high re-occupation probability over time. Limited duty cycles of individual burrows may be caused by accumulating detritus or decreasing stability with increasing burrow age. Alternatively, burrow fidelity may presuppose pair fidelity which may also explain the observed restricted burrow reuse duty cycles. A consequent next step would be to extend our within-colony approach to other colonies and compare the ecological circumstances under which bee-eaters reuse breeding burrows.

Real estate ads in Emei music frog vocalizations: female preference for calls emanating from burrows.

PubMed

Cui, Jianguo; Tang, Yezhong; Narins, Peter M

2012-06-23

During female mate choice, both the male's phenotype and resources (e.g. his nest) contribute to the chooser's fitness. Animals other than humans are not known to advertise resource characteristics to potential mates through vocal communication; although in some species of anurans and birds, females do evaluate male qualities through vocal communication. Here, we demonstrate that calls of the male Emei music frog (Babina dauchina), vocalizing from male-built nests, reflect nest structure information that can be recognized by females. Inside-nest calls consisted of notes with energy concentrated at lower frequency ranges and longer note durations when compared with outside-nest calls. Centre frequencies and note durations of the inside calls positively correlate with the area of the burrow entrance and the depth of the burrow, respectively. When given a choice between outside and inside calls played back alternately, more than 70 per cent of the females (33/47) chose inside calls. These results demonstrate that males of this species faithfully advertise whether or not they possess a nest to potential mates by vocal communication, which probably facilitates optimal mate selection by females. These results revealed a novel function of advertisement calls, which is consistent with the wide variation in both call complexity and social behaviour within amphibians.

Vocal responses of austral forest frogs to amplitude and degradation patterns of advertisement calls.

PubMed

Penna, Mario; Moreno-Gómez, Felipe N; Muñoz, Matías I; Cisternas, Javiera

2017-07-01

Degradation phenomena affecting animal acoustic signals may provide cues to assess the distance of emitters. Recognition of degraded signals has been extensively demonstrated in birds, and recently studies have also reported detection of degraded patterns in anurans that call at or above ground level. In the current study we explore the vocal responses of the syntopic burrowing male frogs Eupsophus emiliopugini and E. calcaratus from the South American temperate forest to synthetic conspecific calls differing in amplitude and emulating degraded and non-degraded signal patterns. The results show a strong dependence of vocal responses on signal amplitude, and a general lack of differential responses to signals with different pulse amplitude modulation depths in E. emiliopugini and no effect of relative amplitude of harmonics in E. calcaratus. Such limited discrimination of signal degradation patterns from non-degraded signals is likely related to the burrowing habits of these species. Shelters amplify outgoing and incoming conspecific vocalizations, but do not counteract signal degradation to an extent comparable to calling strategies used by other frogs. The limited detection abilities and resultant response permissiveness to degraded calls in these syntopic burrowing species would be advantageous for animals communicating in circumstances in which signal alteration prevails. Copyright © 2017 Elsevier B.V. All rights reserved.

Collection of mammal manure and other Debris by nesting Burrowing Owls

USGS Publications Warehouse

Smith, M.D.; Conway, C.J.

2011-01-01

Burrowing Owls (Athene cunicularia) routinely collect and scatter dry manure of mammals around their nesting burrows. Recent studies have suggested this behavior attracts insect prey to the nesting burrow. However, some Burrowing Owls do not use manure, but instead, collect and scatter other materials (e.g., grass, moss, paper, plastic) around their nesting burrow in a similar fashion. Use of these materials seemingly contradicts the prey-attraction hypothesis. Using observational and experimental methods, we tested whether Burrowing Owls preferred manure to other materials commonly found at nesting burrows in eastern Washington. We found a wide variety of materials at nests, but grass and manure were the most common materials. The amount of manure present at nests was negatively correlated with the amount of other materials, and with the distance to the nearest source of manure. Burrowing Owls showed no preference between horse manure and grass divots at experimental supply stations that we placed near nesting burrows. They did prefer these two materials to carpet pieces and aluminum foil (both materials that are often found at Burrowing Owl nests). Our results did not support the premise that Burrowing Owls specifically seek out manure when lining their nesting burrows. The unusual behavior of collecting and scattering mammal manure and other debris at Burrowing Owl nests may serve functions other than (or in addition to) prey attraction and alternative hypotheses need further testing before the function of this behavior is certain. ?? 2011 The Raptor Research Foundation, Inc.

Artificial larviposition sites for field collections of the puparia of tsetse flies Glossina pallidipes and G. m. morsitans (Diptera: Glossinidae).

PubMed

Muzari, M O; Hargrove, J W

2005-06-01

Tsetse flies Glossina pallidipes Austen and G. morsitans morsitans Westwood deposit their larvae in warthog burrows, in August-November, at Rekomitjie Research Station, Zambezi Valley, Zimbabwe. Artificial burrows, made from 200-l steel drums, were used to sample these flies and to collect their puparia. Sand-filled plastic trays in the burrows served as a substrate for larval deposition. The sand was covered with c. 2 cm of leaf litter after it was shown that only 3% of larvae were deposited on bare sand if both substrates were available. Other burrow modifications - artificially shading the burrow entrance, increasing the relative humidity inside the burrow, or reducing the size of the burrow entrance - significantly decreased deposition rates. The use of burrows in the hot season results in a reduction in the temperature experienced by the puparium towards an assumed optimum level of 26 degrees C. Artificial burrows maintained a mean temperature of 28.5 degrees C during October-November 1998, c. 2.5 degrees C cooler than ambient; earlier work has shown that natural burrows can be c. 5 degrees C cooler than ambient at these times. This may explain why natural burrows in full sunlight were used for larviposition, whereas artificial burrows were used only when they were in deep shade, and why significantly higher proportions of G. pallidipes were found in natural (66%) than in artificial burrows (34%). Better-insulated artificial burrows might produce more puparia with higher proportions of G. pallidipes. Burrows become waterlogged during the rains and may be too cool for optimum puparial development during the rest of the year. The percentages of G. m. morsitans in catches of females from artificial burrows, refuges and odour-baited traps were 34, 26 and < 10% respectively. Traps are biased in favour of G. pallidipes; artificial burrows may show a bias in favour of G. m. morsitans that is a function of temperature. Artificial warthog burrows provide a convenient way of studying the puparial stage in tsetse and for the first time facilitate the capture of females as they deposit their larvae.

IMPACT OF BURROWING SHRIMP POPULATIONS ON C, N CYCLING AND WATER QUALITY IN WESTERN NORTH AMERICAN TEMPERATE ESTUARIES

EPA Science Inventory

Thalassinid burrowing shrimp (predominantly, Neotrypaea californiensis and Upogebia pugettensis) inhabit large expanses of tide flats in North American Pacific estuaries, from British Columbia to Baja California. Feeding, burrowing, and burrow irrigation by burrowing shrimp can ...

IMPACT OF BURROWING SHRIMP POPULATIONS ON NITROGEN CYCLING AND WATER QUALITY IN WESTERN NORTH AMERICAN TEMPERATE ESTUARIES

EPA Science Inventory

Thalassinid burrowing shrimp (predominantly, Neotrypaea californiensis and Upogebia pugettensis) inhabit large expanses of tide flats in North American Pacific estuaries, from British Columbia to Baja California. Feeding, burrowing, and burrow irrigation by burrowing shrimp can ...

Shrimp burrow in tropical seagrass meadows: An important sink for litter

NASA Astrophysics Data System (ADS)

Vonk, Jan Arie; Kneer, Dominik; Stapel, Johan; Asmus, Harald

2008-08-01

The abundance, burrow characteristics, and in situ behaviour of the burrowing shrimps Neaxius acanthus (Decapoda: Strahlaxiidae) and Alpheus macellarius (Decapoda: Alpheidae) were studied to quantify the collection of seagrass material, to identify the fate of this collected material, and to determine the importance of these burrowing crustaceans in the nutrient (nitrogen and phosphorus) cycling of two tropical seagrass meadows on Bone Batang, South Sulawesi, Indonesia. Alpheus macellarius harvested 0.70 g dry weight (DW) burrow -1 d -1 seagrass material, dominantly by active cutting of fresh seagrass leaves. Neaxius acanthus collected 1.66 g DW burrow -1 d -1, mainly detached leaves which floated past the burrow opening. The A. macellarius and N. acanthus communities together collected in their burrows an amount of seagrass leaf material corresponding to more than 50% of the leaf production in the meadows studied. The crustacean species studied might therefore fulfil an important function in the nutrient cycling of tropical meadows. In the burrow most of the collected material is shredded into pieces. The burrows of both species had special chambers which serve as a storage for seagrass leaf material. Neaxius acanthus incorporated most of the material into the burrow wall lining, which is made of small sediment particles and macerated seagrass leaves. Phosphate concentrations measured in N. acanthus burrows compared with pore-water and water-column concentrations suggests that a substantial amount of the seagrass material undergoes decomposition in the burrows. Oxygen levels measured in these water bodies are indicative for a possible exchange of water between the burrow and its surroundings, most likely supported by the shrimps irrigating their burrows. By collecting leaf material in their burrows, nutrients that are otherwise lost from the seagrass meadow associated with detached leaves and leaf fragments carried away in the water column, are maintained in the meadow and may form an important source of recycled nutrients.

Lasting Impact of a Tsunami Event on Sediment-Organism Interactions in the Ocean

NASA Astrophysics Data System (ADS)

Seike, Koji; Sassa, Shinji; Shirai, Kotaro; Kubota, Kaoru

2018-02-01

Although tsunami sedimentation is a short-term phenomenon, it may control the long-term benthic environment by altering seafloor surface characteristics such as topography and grain-size composition. By analyzing sediment cores, we investigated the long-term effect of the 2011 tsunami generated by the Tohoku Earthquake off the Pacific coast of Japan on sediment mixing (bioturbation) by an important ecosystem engineer, the heart urchin Echinocardium cordatum. Recent tsunami deposits allow accurate estimation of the depth of current bioturbation by E. cordatum, because there are no preexisting burrows in the sediments. The in situ hardness of the substrate decreased significantly with increasing abundance of E. cordatum, suggesting that echinoid bioturbation softens the seafloor sediment. Sediment-core analysis revealed that this echinoid rarely burrows into the coarser-grained (medium-grained to coarse-grained) sandy layer deposited by the 2011 tsunami; thus, the vertical grain-size distribution resulting from tsunami sedimentation controls the depth of E. cordatum bioturbation. As sandy tsunami layers are preserved in the seafloor substrate, their restriction on bioturbation continues for an extended period. The results demonstrate that understanding the effects on seafloor processes of extreme natural events that occur on geological timescales, including tsunami events, is important in revealing continuing interactions between seafloor sediments and marine benthic invertebrates.

Ventilation of multi-entranced rodent burrows by boundary layer eddies.

PubMed

Brickner-Braun, Inbal; Zucker-Milwerger, Daniel; Braun, Avi; Turner, J Scott; Pinshow, Berry; Berliner, Pedro

2014-12-01

Rodent burrows are often assumed to be environments wherein the air has a high concentration of CO₂. Although high burrow [CO₂] has been recorded, many studies report burrow [CO₂] that differs only slightly from atmospheric concentrations. Here, we advocate that one of the reasons for these differences is the penetration into burrows of air gusts (eddies), which originate in the turbulent boundary layer and prevent build-up of CO₂. We have characterized the means by which burrows of Sundevall's jird, which are representative of the burrows of many rodent species with more than one entrance, are ventilated. Our results demonstrate that, even at low wind speeds, the random penetration of eddies into a burrow through its openings is sufficient to keep the burrow [CO₂] low enough to be physiologically inconsequential, even in its deep and remote parts. © 2014. Published by The Company of Biologists Ltd.

Nest site characteristics and nesting success of the Western Burrowing Owl in the eastern Mojave Desert

USGS Publications Warehouse

Longshore, Kathleen M.; Crowe, Dorothy E.

2013-01-01

We evaluated nest site selection at two spatial scales (microsite, territory) and reproductive success of Western Burrowing Owls (Athene cunicularia hypugaea) at three spatial scales (microsite, territory, landscape) in the eastern Mojave Desert. We used binary logistic regression within an information-theoretic approach to assess factors influencing nest site choice and nesting success. Microsite-scale variables favored by owls included burrows excavated by desert tortoise (Gopherus agassizii), burrows with a large mound of excavated soil at the entrance, and a greater number of satellite burrows within 5 m of the nest burrow. At the territory scale, owls preferred patches with greater cover of creosote bush (Larrea tridentata) within 50 m of the nest burrow. An interaction between the presence or absence of a calcic soil horizon layer over the top of the burrow (microsite) and the number of burrows within 50 m (territory) influenced nest site choice. Nesting success was influenced by a greater number of burrows within 5 m of the nest burrow. Total cool season precipitation was a predictor of nesting success at the landscape scale. Conservation strategies can rely on management of habitat for favored and productive nesting sites for this declining species.

Use of Artificial Burrows by Burrowing Owls (Athene cunicularia) at the HAMMER Facility on the U.S. Department of Energy Hanford Site

DOE Office of Scientific and Technical Information (OSTI.GOV)

Alexander, Amanda K.; Sackschewsky, Michael R.; Duberstein, Corey A.

In 2003 the U.S. Department of Energy (DOE) constructed an Emergency Vehicle Operations Course (EVOC) at the Hazardous Material Management and Emergency Response Training and Education Center (HAMMER) in the southern portion of the Hanford Site. Preliminary surveys during 2001 identified an active burrowing owl (Athene cunicularia) burrow and three burrowing owls within the proposed development area. Burrowing owls were classified as a federal species of concern, a Washington State ?candidate? species, a Washington Department of Fish and Wildlife priority species, and a Hanford Site Biological Resources Management Plan Level III resource. Therefore, the mitigation action plan for the projectmore » included the installation of twenty artificial burrows around EVOC in the spring of 2003. The mitigation plan established a success criterion of five percent annual use of the burrows by owls. In July 2005, a field survey of the EVOC burrow complex was conducted to determine use and demography at each site. Burrow locations were mapped and signs of activity (feces, owl tracks, castings, feathers) were recorded. Out of the twenty burrows, twelve were found to be active. Of the eight inactive burrows three appeared to have been active earlier in the 2005 breeding season. A total of nineteen owls were counted but demography could not be determined. It appears that the EVOC mitigation exceeded burrow use goals during 2005. Continued site monitoring and maintenance, according to mitigation plan guidelines should be conducted as prescribed.« less

Quantifying Uncertainty in Flood Inundation Mapping Using Streamflow Ensembles and Multiple Hydraulic Modeling Techniques

NASA Astrophysics Data System (ADS)

Hosseiny, S. M. H.; Zarzar, C.; Gomez, M.; Siddique, R.; Smith, V.; Mejia, A.; Demir, I.

2016-12-01

The National Water Model (NWM) provides a platform for operationalize nationwide flood inundation forecasting and mapping. The ability to model flood inundation on a national scale will provide invaluable information to decision makers and local emergency officials. Often, forecast products use deterministic model output to provide a visual representation of a single inundation scenario, which is subject to uncertainty from various sources. While this provides a straightforward representation of the potential inundation, the inherent uncertainty associated with the model output should be considered to optimize this tool for decision making support. The goal of this study is to produce ensembles of future flood inundation conditions (i.e. extent, depth, and velocity) to spatially quantify and visually assess uncertainties associated with the predicted flood inundation maps. The setting for this study is located in a highly urbanized watershed along the Darby Creek in Pennsylvania. A forecasting framework coupling the NWM with multiple hydraulic models was developed to produce a suite ensembles of future flood inundation predictions. Time lagged ensembles from the NWM short range forecasts were used to account for uncertainty associated with the hydrologic forecasts. The forecasts from the NWM were input to iRIC and HEC-RAS two-dimensional software packages, from which water extent, depth, and flow velocity were output. Quantifying the agreement between output ensembles for each forecast grid provided the uncertainty metrics for predicted flood water inundation extent, depth, and flow velocity. For visualization, a series of flood maps that display flood extent, water depth, and flow velocity along with the underlying uncertainty associated with each of the forecasted variables were produced. The results from this study demonstrate the potential to incorporate and visualize model uncertainties in flood inundation maps in order to identify the high flood risk zones.

Large mammal burrows in late Miocene calcic paleosols from central Argentina: paleoenvironment, taphonomy and producers.

PubMed

Cardonatto, María Cristina; Melchor, Ricardo Néstor

2018-01-01

Large cylindrical sediment-filled structures interpreted as mammal burrows occur within the loess-paleosol sequence of the late Miocene Cerro Azul Formation of central Argentina. A total of 115 burrow fills from three localities were measured. They are typically shallowly dipping, subcylindrical, unbranched structures with rounded ends and lacking enlargements. The horizontal diameter of the burrows range between 0.15 and 1.50 m, with most of the burrows in the interval of 0.39 to 0.98 m. Geometric morphometric analysis of transverse cross-sections support their distinct subcircular and elliptical (horizontally flattened) shapes. Burrow fills are typically laminated in the lower part and massive in the upper part. The laminated intervals reflect pulses of flowing water entering the abandoned burrow during moderate rains, whereas massive intervals reflect mass flow input of dense sediment-water mixtures during heavy rains that produced sheet floods. Approximately 1% of the burrows contained fragmentary, disarticulated and weathered mammal bones that were introduced in the open burrow by currents along with other sedimentary particles. Analysis of the tetrapod burrow fossil record suggests that Miocene burrows, including those studied herein, reflect a remarkable increase in the average size of the fossorial fauna. We conclude that large late Miocene mammals dug burrows essentially as a shelter against environmental extremes and to escape predation. The simple architecture of the burrows suggests that the producers essentially foraged aboveground. Several mammal groups acquired fossorial habits in response to cold and seasonally dry climatic conditions that prevailed during the late Miocene in southern South America. The considerable range of horizontal diameters of the studied burrows can be attributed to a variety of producers, including dasypodids, the notoungulate Paedotherium minor , Glyptodontidae and Proscelidodon sp.

Meandering worms: mechanics of undulatory burrowing in muds

PubMed Central

Dorgan, Kelly M.; Law, Chris J.; Rouse, Greg W.

2013-01-01

Recent work has shown that muddy sediments are elastic solids through which animals extend burrows by fracture, whereas non-cohesive granular sands fluidize around some burrowers. These different mechanical responses are reflected in the morphologies and behaviours of their respective inhabitants. However, Armandia brevis, a mud-burrowing opheliid polychaete, lacks an expansible anterior consistent with fracturing mud, and instead uses undulatory movements similar to those of sandfish lizards that fluidize desert sands. Here, we show that A. brevis neither fractures nor fluidizes sediments, but instead uses a third mechanism, plastically rearranging sediment grains to create a burrow. The curvature of the undulating body fits meander geometry used to describe rivers, and changes in curvature driven by muscle contraction are similar for swimming and burrowing worms, indicating that the same gait is used in both sediments and water. Large calculated friction forces for undulatory burrowers suggest that sediment mechanics affect undulatory and peristaltic burrowers differently; undulatory burrowing may be more effective for small worms that live in sediments not compacted or cohesive enough to extend burrows by fracture. PMID:23446526

Spatial ecology of refuge selection by an herbivore under risk of predation

USGS Publications Warehouse

Wilson, Tammy L.; Rayburn, Andrew P.; Edwards, Thomas C.

2012-01-01

Prey species use structures such as burrows to minimize predation risk. The spatial arrangement of these resources can have important implications for individual and population fitness. For example, there is evidence that clustered resources can benefit individuals by reducing predation risk and increasing foraging opportunity concurrently, which leads to higher population density. However, the scale of clustering that is important in these processes has been ignored during theoretical and empirical development of resource models. Ecological understanding of refuge exploitation by prey can be improved by spatial analysis of refuge use and availability that incorporates the effect of scale. We measured the spatial distribution of pygmy rabbit (Brachylagus idahoensis) refugia (burrows) through censuses in four 6-ha sites. Point pattern analyses were used to evaluate burrow selection by comparing the spatial distribution of used and available burrows. The presence of food resources and additional overstory cover resources was further examined using logistic regression. Burrows were spatially clustered at scales up to approximately 25 m, and then regularly spaced at distances beyond ~40 m. Pygmy rabbit exploitation of burrows did not match availability. Burrows used by pygmy rabbits were likely to be located in areas with high overall burrow density (resource clusters) and high overstory cover, which together minimized predation risk. However, in some cases we observed an interaction between either overstory cover (safety) or understory cover (forage) and burrow density. The interactions show that pygmy rabbits will use burrows in areas with low relative burrow density (high relative predation risk) if understory food resources are high. This points to a potential trade-off whereby rabbits must sacrifice some safety afforded by additional nearby burrows to obtain ample forage resources. Observed patterns of clustered burrows and non-random burrow use improve understanding of the importance of spatial distribution of refugia for burrowing herbivores. The analyses used allowed for the estimation of the spatial scale where subtle trade-offs between predation avoidance and foraging opportunity are likely to occur in a natural system.

Balancing the competing requirements of saltatorial and fossorial specialisation: burrowing costs in the spinifex hopping mouse, Notomys alexis.

PubMed

White, Craig R; Matthews, Philip G D; Seymour, Roger S

2006-06-01

Semi-fossorial animals (burrowing surface foragers) need to balance the competing morphological requirements of terrestrial and burrowing locomotion. These species rarely show the same degree of claw, forelimb and pectoral girdle structural development that fully fossorial forms (burrowing subterranean foragers) do, but nevertheless invest considerable amounts of energy in burrow systems. The compromise between terrestrial and burrowing locomotion was investigated by measuring net costs of burrowing and pedestrian transport in the spinifex hopping mouse, Notomys alexis, a species that forages in open areas in arid environments and is adapted for saltatorial locomotion. The net cost of transport by burrowing of hopping mice was found to be more expensive than for specialised fossorial species, and burrows were estimated to represent an energy investment equivalent to the terrestrial locomotion expected to be incurred in 17-100 days. A phylogenetically independent-contrasts approach revealed that morphological specialisation for burrowing was associated with low maximum running speeds in fossorial mammals and, for non-fossorial rodents and marsupials, maximum running speed was positively correlated with an index of habitat structure that ranged from arboreal to open desert. The high terrestrial speeds attainable by this semi-fossorial species by saltatory locomotion apparently outweigh the energetic savings that would be associated with burrowing specialisation.

Multiscale habitat selection by burrowing owls in black-tailed prairie dog colonies

USGS Publications Warehouse

Lantz, S.J.; Conway, C.J.; Anderson, S.H.

2007-01-01

Some populations of western burrowing owls (Athene cunicularia hypugaea) have declined in recent decades. To design and implement effective recovery efforts, we need a better understanding of how distribution and demographic traits are influenced by habitat quality. To this end, we measured spatial patterns of burrowing owl breeding habitat selection within black-tailed prairie dog (Cynomys ludovicianus) colonies in northeastern Wyoming, USA. We compared burrow-, site-, colony-, and landscape-scale habitat parameters between burrowing owl nest burrows (n = 105) and unoccupied burrows (n = 85). We sampled 4 types of prairie dog colonies: 1) owl-occupied, active with prairie dogs (n = 16); 2) owl-occupied, inactive (n = 13); 3) owl-unoccupied, active (n = 14); and 4) owl-unoccupied, inactive (n = 14). We used an information-theoretic approach to examine a set of candidate models of burrowing owl nest-site selection. The model with the most support included variables at all 4 spatial scales, and results were consistent among the 4 types of prairie dog colonies. Nest burrows had longer tunnels, more available burrows within 30 m, and less shrub cover within 30 m, more prairie dog activity within 100 m, and were closer to water than unoccupied burrows. The model correctly classified 76% of cases, all model coefficients were stable, and the model had high predictive ability. Based on our results, we recommend actions to ensure persistence of the remaining prairie dog colonies as an important management strategy for burrowing owl conservation in the Great Plains of North America.

Evolution and Genetics of Precocious Burrowing Behavior in Peromyscus Mice.

PubMed

Metz, Hillery C; Bedford, Nicole L; Pan, Yangshu Linda; Hoekstra, Hopi E

2017-12-18

A central challenge in biology is to understand how innate behaviors evolve between closely related species. One way to elucidate how differences arise is to compare the development of behavior in species with distinct adult traits [1]. Here, we report that Peromyscus polionotus is strikingly precocious with regard to burrowing behavior, but not other behaviors, compared to its sister species P. maniculatus. In P. polionotus, burrows were excavated as early as 17 days of age, whereas P. maniculatus did not build burrows until 10 days later. Moreover, the well-known differences in burrow architecture between adults of these species-P. polionotus adults excavate long burrows with an escape tunnel, whereas P. maniculatus dig short, single-tunnel burrows [2-4]-were intact in juvenile burrowers. To test whether this juvenile behavior is influenced by early-life environment, we reciprocally cross-fostered pups of both species. Fostering did not alter the characteristic burrowing behavior of either species, suggesting that these differences are genetic. In backcross hybrids, we show that precocious burrowing and adult tunnel length are genetically correlated and that a P. polionotus allele linked to tunnel length variation in adults is also associated with precocious onset of burrowing in juveniles, suggesting that the same genetic region-either a single gene with pleiotropic effects or linked genes-influences distinct aspects of the same behavior at these two life stages. These results raise the possibility that genetic variants affect behavioral drive (i.e., motivation) to burrow and thereby affect both the developmental timing and adult expression of burrowing behavior. Copyright © 2017 Elsevier Ltd. All rights reserved.

Population models of burrowing mayfly recolonization in Western Lake Erie

USGS Publications Warehouse

Madenjian, C.P.; Schloesser, D.W.; Krieger, K.A.

1998-01-01

Burrowing mayflies, Hexagenia spp. (H. limbata and H. rigida), began recolonizing western Lake Erie during the 1990s. Survey data for mayfly nymph densities indicated that the population experienced exponential growth between 1991 and 1997. To predict the time to full recovery of the mayfly population, we fitted logistic models, ranging in carrying capacity from 600 to 2000 nymphs/m2, to these survey data. Based on the fitted logistic curves, we forecast that the mayfly population in western Lake Erie would achieve full recovery between years 1998 and 2000, depending on the carrying capacity of the western basin. Additionally, we estimated the mortality rate of nymphs in western Lake Erie during 1994 and then applied an age-based matrix model to the mayfly population. The results of the matrix population modeling corroborated the exponential growth model application in that both methods yielded an estimate of the population growth rate, r, in excess of 0.8 yr-1. This was the first evidence that mayfly populations are capable of recolonizing large aquatic ecosystems at rates comparable with those observed in much smaller lentic ecosystems. Our model predictions should prove valuable to managers of power plant facilities along the western basin in planning for mayfly emergences and to managers of the yellow perch (Perca flavescens) fishery in western Lake Erie.

The Southwest Atlantic intertidal burrowing crab Neohelice granulata modifies nutrient loads of phreatic waters entering coastal area

NASA Astrophysics Data System (ADS)

Fanjul, Eugenia; Grela, María A.; Canepuccia, Alejandro; Iribarne, Oscar

2008-08-01

Along the coastal areas of the Southwest Atlantic estuaries and embayments, phreatic water often circulates through very extended areas (up to several hundred meters perpendicular to the coast), dominated by dense assemblages of deep burrows of the crab Neohelice granulata (formerly Chasmagnathus granulatus). This crab inhabits the intertidal area, from mudflats to marshes vegetated by species of Spartina, Sarcocornia and Juncus, generating extensive burrowing beds where burrow density may reach up to 60 burrows m -2. Since the lower limit of the crab burrows is usually the water table, we investigated through field experiments the effect of N. granulata and their burrows on the chemical characteristics of this phreatic water. Water analysis from experimental (1) occupied burrows (with crabs), (2) unoccupied burrows (where crabs were excluded), and (3) sediment pore water show remarkable differences. Water oxygenation, and nitrate, ammonium and sulphate concentrations inside occupied burrows were higher than in the water inside unoccupied burrows or pore waters. Moreover, directed sampling of phreatic water entering and leaving the crab bed, shows that dissolved inorganic nitrogen concentration is enhanced as the water crosses the crab bed. These results may be ascribed to the fact that in the salt marsh the crabs spend most of their time within burrows, where presumably they store food (plants) and defecate. These activities generate an area of accumulation of excrements and nutrients in different decomposition states. The present work shows a novel way by which bioturbating organisms can affect nutrients exportation from salt marshes to the open waters.

Fine-scale habitat use of reintroduced black-footed ferrets on prairie dog colonies in New Mexico

USGS Publications Warehouse

Chipault, Jennifer G.; Biggins, Dean E.; Detling, James K.; Long, Dustin H.; Reich, Robin M.

2012-01-01

Black-footed ferrets (Mustela nigripes) are among the most endangered animals in North America. Reintroductions of captive-born ferrets onto prairie dog (Cynomys spp.) colonies are crucial to the conservation of the species. In September 2007, captive-born ferrets were released on a black-tailed prairie dog (Cynomys ludovicianus) colony at the Vermejo Park Ranch, New Mexico. Ferret kits experimentally released in areas of comparatively low and high prairie dog burrow densities were located via spotlight surveys. Some maturing ferret kits were subsequently translocated to areas of low and high burrow densities on nearby prairie dog colonies. For 2 months, fine-scale habitat use was quantified by mapping all burrow openings within a 30-m radius of each ferret location. Spatial statistics accounted for autocorrelation in the burrow densities in areas used by ferrets. It was hypothesized that ferrets would select areas of high burrow densities within colonies; however, burrow densities in areas used by ferrets were generally similar to the available burrow densities. Because ferrets used areas with burrow densities similar to densities available at the colony level and because of the potential energetic benefits for ferrets using areas with high burrow densities, releasing ferrets on colonies with high burrow densities might increase reintroduction success.

Population trajectory of burrowing owls (Athene cunicularia) in eastern Washington

USGS Publications Warehouse

Conway, C.J.; Pardieck, K.L.

2006-01-01

Anecdotal evidence suggests that burrowing owls have declined in Washington. The Washington Department of Fish and Wildlife is currently conducting a status review for burrowing owls which will help determine whether they should be listed as threatened or endangered in the state. To provide insights into the current status of burrowing owls (Athene cunicularia), we analyzed data from the North American Breeding Bird Survey using two analytical approaches to determine their current population trajectory in eastern Washington. We used a one-sample t-test to examine whether trend estimates across all BBS routes in Washington differed from zero. We also used a mixed model analysis to estimate the rate of decline in number of burrowing owls detected between 1968 and 2005. The slope in number of burrowing owls detected was negative for 12 of the 16 BBS routes in Washington that have detected burrowing owls. Numbers of breeding burrowing owls detected in eastern Washington declined at a rate of 1.5% annually. We suggest that all BBS routes that have detected burrowing owls in past years in eastern Washington be surveyed annually and additional surveys conducted to track population trends of burrowing owls at finer spatial scales in eastern Washington. In the meantime, land management and regulatory agencies should ensure that publicly managed areas with breeding burrowing owls are not degraded and should implement education and outreach programs to promote protection of privately owned areas with breeding owls.

Evidence for and geomorphologic consequences of a reptilian ecosystem engineer: The burrowing cascade initiated by the Gopher Tortoise

NASA Astrophysics Data System (ADS)

Kinlaw, A.; Grasmueck, M.

2012-07-01

Physical ecosystem engineers often make major, durable physical constructs that can provide living space for other species and can structure local animal communities over evolutionary time. In Florida, a medium sized chelonian, the Gopher Tortoise (Gopherus polyphemus) will excavate extensive subterranean chambers that can endure for long periods of time. The tortoise starts a 'burrowing cascade', by first excavating a larger burrow that may extend 10 m, which is then re-engineered by Florida Mice (Podomys floridanus) and other rodents that dig smaller side-burrows and pockets. This sequence is often followed by an invertebrate, the camel cricket (Ceuthophilus labibuli) which is reported to excavate even smaller chambers. Our first aim was to quantify the zoogeomorphic impact of this burrowing cascade by measuring the amount of soil excavated in a large sample of burrows in two communities. Secondly, we hypothesized that the high biodiversity reported for these structures might be related to the quasi-fractal nature of the geometry, following the work of Frontier (1987). To visualize this underground geometry, we used high-resolution 3D Ground Penetrating Radar (GPR), which provided images and insights previously unobtainable using excavations or 2D GPR. Our images verified that the active tortoise burrow had a spiraling shape, but also showed splits in the larger burrow apparently dug by tortoises. For the first time, the smaller Florida Mouse burrows were imaged, showing side loops that exit and re-renter the tortoise burrow. This study also presents new information by making the discovery of numerous remnants of past tortoise burrows underground in the sampling grid surrounding the active burrow. Our third aim was to interpret our field results with previous ecological field studies to evaluate the strength of evidence that this species ranks as an ecosystem engineer.

Standard analgesics reverse burrowing deficits in a rat CCI model of neuropathic pain, but not in models of type 1 and type 2 diabetes-induced neuropathic pain.

PubMed

Rutten, Kris; Gould, Stacey A; Bryden, Luke; Doods, Henri; Christoph, Thomas; Pekcec, Anton

2018-09-17

Burrowing is a rodent behavior validated as a robust and reproducible outcome measure to infer the global effect of pain in several inflammatory pain models. However, less is known about the effect of analgesics on burrowing in neuropathic pain models and no studies have determined burrowing performance in models of diabetes-associated neuropathic pain. To compare the sensitivity of the burrowing assay in different neuropathic pain models: mononeuropathic pain and diabetic polyneuropathy. Burrowing performance was determined by the amount of substrate left in a hollow tube by rats with chronic constriction injury (CCI). In addition, burrowing performance, locomotion and pain development was assessed in the Zucker diabetic fatty (ZDF) rat model, resembling type-2 diabetes. Efficacy of clinically-active reference drugs (opioids, gabapentin and/or pregabalin) were investigated in these models. Burrowing behavior was additionally assessed in a second model, induced by streptozotocin (STZ) treatment, resembling type-1 diabetes. In the CCI model, moderate but consistent burrowing deficits were observed that persisted over a period of ≥20 days. Systemic administration of morphine, pregabalin and gabapentin reversed this deficit. In contrast, none of the reference drugs improved marked burrowing deficits detected in ZDF rats, and pregabalin did not reverse severe burrowing deficits observed in STZ rats. Burrowing performance cannot necessarily be used as pain-related readout across pain models and largely depends on the model used, at least in models of neuropathy. Specifically, analgesic drug effects might be masked by general diabetes-associated alteration of the animals' well-being, resulting in false negative outcomes. Copyright © 2018 The Authors. Published by Elsevier B.V. All rights reserved.

The zoogeomorphic characteristics of burrows and burrowing by nine-banded armadillos (Dasypus novemcinctus)

NASA Astrophysics Data System (ADS)

Sawyer, Carol F.; Brinkman, Donald C.; Walker, Vincent D.; Covington, Tyler D.; Stienstraw, Elizabeth A.

2012-07-01

Burrowing animals act like a geomorphic disturbance, changing the environment through soil excavation, landform creation and bioturbation. The potential zoogeomorphic effects of these actions include modification of surficial features, increased soil erosion, changes in the growth and distribution of vegetation, and modifications to soil fertility. The burrowing ninebanded armadillo (Dasypus novemcinctus) migrated to North America prior to the 1850s and has since continued to expand its habitat to the American Southeast and parts of the Midwest. Little data are available on the zoogeomorphic impact of the burrowing nature of this species, making it difficult to predict future implications of this animal as it continues to migrate into new regions. On the University of South Alabama campus, in Mobile, Alabama, armadillos are present on a 35-hectare unprotected forested preserve used by the university community for outdoor activities and research. To understand the potential zoogeomorphic impact of armadillo burrows on the local environment, morphometric measurements were recorded on 187 burrows located in the study area. Using dimensions of burrow entrances and minimum lengths of tunnels in calculations, armadillos excavated approximately 0.029 m3 to 0.04 m3 of soil from each burrow. The entrances to burrows averaged 33.5° in slope and tended to be located in a microhabitat of a fallen tree, exposed tree roots, or a sideslope. Persistent fall of forest litter and anthropogenic modifications makes positive identification of spoil mounds possible in approximately half of the burrow sites. Surface modification by armadillos is ongoing in the study area with over half of the burrows classified as active during the four-month project. We concluded that, for southern Alabama, armadillos prefer to excavate burrows into sideslopes, and that given the lack of ground cover, sandy soil, and humid climate, armadillos are an important zoogeomorphic agent in the region.

Distribution and habitat utilization of the gopher tortoise tick (Amblyomma tuberculatum) in southern Mississippi

USGS Publications Warehouse

Ennen, Joshua R.; Qualls, Carl P.

2011-01-01

The distribution of the gopher tortoise tick (Amblyomma tuberculatum) has been considered intrinsically linked to the distribution of its primary host, gopher tortoises (Gopherus polyphemus). However, the presence of G. polyphemus does not always equate to the presence of A. tuberculatum. There is a paucity of data on the ecology, habitat preferences, and distribution of A. tuberculatum. The goals of this study were to assess the distribution of A. tuberculatum in southern Mississippi and to determine which, if any, habitat parameters explain the distribution pattern of A. tuberculatum. During 2006-2007, we examined 13 G. polyphemus populations in southern Mississippi for the presence of A. tuberculatum, and we measured a suite of habitat parameters at each site. Only 23% of the G. polyphemus populations supported A. tuberculatum, suggesting a more restricted distribution than its host. The results of our multivariate analyses identified several habitat variables, e.g., depth of sand and percentage of sand in the topsoil and burrow apron, as being important in discriminating between sites with, and without, A. tuberculatum. Amblyomma tuberculatum was only found at sites with a mean sand depth of >100 cm and a mean percentage of topsoil and burrow apron sand composition >94.0 and 92.4, respectively. Thus, environmental factors, and not just its host's range, seem to influence the distribution of A. tuberculatum.

Distribution and habitat utilization of the gopher tortoise tick (Amblyomma tuberculatum) in Southern Mississippi

USGS Publications Warehouse

Ennen, J.R.; Qualls, C.P.

2011-01-01

The distribution of the gopher tortoise tick (Amblyomma tuberculatum) has been considered intrinsically linked to the distribution of its primary host, gopher tortoises (Gopherus polyphemus). However, the presence of G. polyphemus does not always equate to the presence of A. tuberculatum. There is a paucity of data on the ecology, habitat preferences, and distribution of A. tuberculatum. The goals of this study were to assess the distribution of A. tuberculatum in southern Mississippi and to determine which, if any, habitat parameters explain the distribution pattern of A. tuberculatum. During 2006-2007, we examined 13 G. polyphemus populations in southern Mississippi for the presence of A. tuberculatum, and we measured a suite of habitat parameters at each site. Only 23% of the G. polyphemus populations supported A. tuberculatum, suggesting a more restricted distribution than its host. The results of our multivariate analyses identified several habitat variables, e.g., depth of sand and percentage of sand in the topsoil and burrow apron, as being important in discriminating between sites with, and without, A. tuberculatum. Amblyomma tuberculatum was only found at sites with a mean sand depth of >100 cm and a mean percentage of topsoil and burrow apron sand composition >94.0 and 92.4, respectively. Thus, environmental factors, and not just its host's range, seem to influence the distribution of A. tuberculatum. ?? American Society of Parasitologists 2011.

Predicting macropores in space and time by earthworms and abiotic controls

NASA Astrophysics Data System (ADS)

Hohenbrink, Tobias Ludwig; Schneider, Anne-Kathrin; Zangerlé, Anne; Reck, Arne; Schröder, Boris; van Schaik, Loes

2017-04-01

Macropore flow increases infiltration and solute leaching. The macropore density and connectivity, and thereby the hydrological effectiveness, vary in space and time due to earthworms' burrowing activity and their ability to refill their burrows in order to survive drought periods. The aim of our study was to predict the spatiotemporal variability of macropore distributions by a set of potentially controlling abiotic variables and abundances of different earthworm species. We measured earthworm abundances and effective macropore distributions using tracer rainfall infiltration experiments in six measurement campaigns during one year at six field sites in Luxembourg. Hydrologically effective macropores were counted in three soil depths (3, 10, 30 cm) and distinguished into three diameter classes (<2, 2-6, >6 mm). Earthworms were sampled and determined to species-level. In a generalized linear modelling framework, we related macropores to potential spatial and temporal controlling factors. Earthworm species such as Lumbricus terrestris and Aporrectodea longa, local abiotic site conditions (land use, TWI, slope), temporally varying weather conditions (temperature, humidity, precipitation) and soil moisture affected the number of effective macropores. Main controlling factors and explanatory power of the models (uncertainty and model performance) varied depending on the depth and diameter class of macropores. We present spatiotemporal predictions of macropore density by daily-resolved, one year time series of macropore numbers and maps of macropore distributions at specific dates in a small-scale catchment with 5 m resolution.

Orofacial neuropathic pain reduces spontaneous burrowing behavior in rats.

PubMed

Deseure, K; Hans, G

2018-07-01

It was recently reported that spontaneous burrowing behavior is decreased after tibial nerve transection, spinal nerve transection and partial sciatic nerve ligation. It was proposed that spontaneous burrowing could be used as a measure of the impact of neuropathic pain after peripheral nerve injury. It has remained unclear whether the reduction in burrowing behavior is caused directly by pain or hypersensitivity in the affected limbs, making it more difficult to perform burrowing, or by a pain induced decrease in the general wellbeing, thus reducing the motivation to burrow. We studied burrowing behavior after infraorbital nerve injury, a model of orofacial neuropathic pain that does not affect the limbs. Burrowing behavior was significantly reduced after infraorbital nerve injury. Isolated face grooming and responsiveness to mechanical von Frey stimulation of the infraorbital nerve territory were significantly increased after infraorbital nerve injury, indicative, respectively, of spontaneous pain and mechanical allodynia. It is concluded that spontaneous burrowing may provide a measure of the global impact of pain on the animal's wellbeing after peripheral nerve injury and incorporation of this behavioral assay in preclinical drug testing may improve the predictive validity of currently used pain models. Copyright © 2018 Elsevier Inc. All rights reserved.

Population dynamics and bioenergetics of a fossorial herbivore, Thomomys talpoides (Rodentia: Geomyidae), in a spruce-fir sere

USGS Publications Warehouse

Andersen, Douglas C.; MacMahon, James A.

1981-01-01

Studies of the bioenergetics of the northern pocket gopher, Thomomys talpoides, are coupled with data on demography, activity budgets, and microclimates to model the energy requirements of individuals and populations in the Wasatch Mountains of Utah during 1976-1979. Metabolic rates during rest increased linearly with decreasing ambient temperature, but burrowing metabolic rates (16.3 mL O2 • h-1 • g-9.75) were independent of both temperature and physical properties of the soil. Radio-telemetry studies indicated that free-ranging gophers are active =50% of each day. Conservative estimates of true energy consumption were calculated using estimates of habitat-specific minimum daily burrowing requirements. Rates of burrowing measured in the laboratory were either ∞ 0.0 or ∞ 2.0 cm/min. The low burrowing rate was observed when the soil was frozen or saturated with water, as would occur in the field in early winter and in spring, respectively. Gophers burrowed through soil at the study site at an average rate of ∞ 1.5 cm/min. Belowground food energy densities at gopher foraging depth declined from 24.6 to 3.2 J/cm3 along a successional gradient (subalpine forb meadow to Engelmann spruce dominated forest). We conclude that individual gophers are food limited within the climax spruce seral stage. Further, daily energy costs associated with reproduction in females may exceed the belowground energy supply available in intermediate seral stages (aspen and subalpine fir). Reduction of burrowing rates for any reason will affect gophers in the late seral stages proportionately more than those resident in the meadow. The peak gopher densities recorded (from 62 individuals/ha in the meadow to 2 individuals/ha in spruce forest) support these inferences. Detailed demographic information was obtained only in the meadow seral stage. Adult survivorship was lower in winter than in summer and varied greatly between years (0.18-0.70 yr-1). Juvenile survivorship from weaning through the first year was comparable to adult annual rates. The fertility rate was 3.75 young • female-1 • yr-1. The energy supply and demand analyses indicate that the growth of Thomomys talpoides populations in the early seral stages is seldom directly limited by the amount of food present. From our demographic, environmental, and autecological studies we conclude that stochastic events associated with weather affect energy acquisition (burrowing) rates, and thus survivorship. In montane environments, such events may prevent populations from attaining sizes at which territorial behavior would hypothetically limit further increases. The energy flow through the meadow population at moderate to high )1976-1977) densities (at least 1100 MJ • ha-1 • yr-1) indicates that pocket gophers are proficient energy movers relative to non-fossorial small mammals. Subalpine T. talpoides populations appear commonly to attain such densities. More than 30% of the annual primary productivity allocated to belowground parts of meadow forbs may be consumed by gophers.

Silvery mole-rats ( Heliophobius argenteocinereus, Bathyergidae) change their burrow architecture seasonally.

PubMed

Sumbera, Radim; Burda, Hynek; Chitaukali, Wilbert N; Kubová, Jana

2003-08-01

Little is known about seasonal changes in burrowing activity and burrow architecture in subterranean African mole-rats (Bathyergidae, Rodentia). The solitary genus Heliophobius is the least known genus of this family. We examined burrow systems of the silvery mole-rat (Heliophobius argenteocinereus) in Malawi in two periods of the dry season. Burrow pattern was influenced by the time of the year, becoming more reticulated at the peak of the dry season when soil was dry and hard. Overall digging activity did not cease during the dry season; yet burrowing strategy changed and the soil was deposited in tunnels rather than transported to mounds. The length of burrow systems was correlated with the body mass of the respective occupants. In spite of their solitary habits--and contrary to the prediction of the aridity food-distribution hypothesis--silvery mole-rats are able to occupy poor habitats with low food supply.

Vegetation and soils of burrowing owl nest sites in Conata Basin, South Dakota

Treesearch

James G. MacCracken; Daniel W. Uresk; Richard M. Hansen

1985-01-01

Burrowing Owls (Athene cunicularia) in southwestern South Dakota frequently use the burrows of black-tailed prairie dogs (Cynomys ludovicianus) for nesting and escape cover. Coulombe (1971) emphasized the importance of understanding the role of burrow selection in relation to owl behavior, physiology, and overall ecology. He also...

Transient-state mechanisms of wind-induced burrow ventilation.

PubMed

Turner, J Scott; Pinshow, Berry

2015-01-15

Burrows are common animal habitations, yet living in a burrow presents physiological challenges for its inhabitants because the burrow isolates them from sources and sinks for oxygen, carbon dioxide, water vapor and ammonia. Conventionally, the isolation is thought to be overcome by either diffusion gas exchange within the burrow or some means of capturing wind energy to power steady or quasi-steady bulk flows of air through it. Both are examples of what may be called 'DC' models, namely steady to quasi-steady flows powered by steady to quasi-steady winds. Natural winds, however, are neither steady nor quasi-steady, but are turbulent, with a considerable portion of the energy contained in so-called 'AC' (i.e. unsteady) components, where wind velocity varies chaotically and energy to power gas exchange is stored in some form. Existing DC models of burrow gas exchange do not account for this potentially significant source of energy for ventilation. We present evidence that at least two AC mechanisms operate to ventilate both single-opening burrows (of the Cape skink, Trachylepis capensis) and double-opening model burrows (of Sundevall's jird, Meriones crassus). We propose that consideration of the physiological ecology and evolution of the burrowing habit has been blinkered by the long neglect of AC ventilation. © 2015. Published by The Company of Biologists Ltd.

Detecting plague-host abundance from space: Using a spectral vegetation index to identify occupancy of great gerbil burrows

NASA Astrophysics Data System (ADS)

Wilschut, Liesbeth I.; Heesterbeek, Johan A. P.; Begon, Mike; de Jong, Steven M.; Ageyev, Vladimir; Laudisoit, Anne; Addink, Elisabeth A.

2018-02-01

In Kazakhstan, plague outbreaks occur when its main host, the great gerbil, exceeds an abundance threshold. These live in family groups in burrows, which can be mapped using remote sensing. Occupancy (percentage of burrows occupied) is a good proxy for abundance and hence the possibility of an outbreak. Here we use time series of satellite images to estimate occupancy remotely. In April and September 2013, 872 burrows were identified in the field as either occupied or empty. For satellite images acquired between April and August, 'burrow objects' were identified and matched to the field burrows. The burrow objects were represented by 25 different polygon types, then classified (using a majority vote from 10 Random Forests) as occupied or empty, using Normalized Difference Vegetation Indices (NDVI) calculated for all images. Throughout the season NDVI values were higher for empty than for occupied burrows. Occupancy status of individual burrows that were continuously occupied or empty, was classified with producer's and user's accuracy values of 63 and 64% for the optimum polygon. Occupancy level was predicted very well and differed 2% from the observed occupancy. This establishes firmly the principle that occupancy can be estimated using satellite images with the potential to predict plague outbreaks over extensive areas with much greater ease and accuracy than previously.

Burrow-generated false facies and phantom sequences

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wanless, H.R.; Tagett, M.

Callianassa (=Ophiomorpha) and other burrowers deeply rework shallow marine sequences. Through in-situ reworking, they create false sedimentary facies and stratigraphic sequences. Callianassa's key to effectiveness is that it expels sand and mud from burrow excavations but concentrates coarse material at the base of the burrow complex. Coarse material can be derived by falling into the burrow entrance, by reworking the existing sediment sequence, or by a combination of both. Examples come from shallow marine carbonate environments of south Florida and the Turks and Caicos Islands, British West Indies. Many mudbanks in south Florida are formed as stacks of layered mudstonemore » units 20-100 cm thick. Between events, seagrasses may recolonize, and a burrowing benthic community may repopulate the substrate. The layered mudstone beneath older areas of mudbank flats can gradually be converted to a bioturbated skeletal wackestone by the deep burrowing community. Burrowing also causes mixing of faunal assemblages. On Caicos Bank, an extensive carbonate tidal flat (3-4 m thick) is slowly being transgressed. About 1 m of tidal-flat sequence is eroded at the shoreline. The remaining 2-3 m could be preserved as part of the transgressive sequence. Callianassa burrowing, however, quickly reworks the sequence, replacing tidal-flat sands and muds with marine peloidal and skeletal sediment. Within 100 m of the shoreline, the only evidence of the tidal-flat sequence is a concentration of high-spired gastropods in Calliannassa burrows at the base of the Holocene sequence and a few patches of tidal-flat sediment that burrowers missed. What looks like a basal transgressive lag is in fact a biogenic concentrate from in-situ reworking of a now phantom sequence.« less

Potential impact of Chironomus plumosus larvae on hypolimnetic oxygen in the central basin of Lake Erie

USGS Publications Warehouse

Soster, Frederick M.; Matisoff, Gerald; Schloesser, Donald W.; Edwards, William J.

2015-01-01

Previous studies have indicated that burrow-irrigating infauna can increase sediment oxygen demand (SOD) and impact hypolimnetic oxygen in stratified lakes. We conducted laboratory microcosm experiments and computer simulations with larvae of the burrowing benthic midge Chironomus plumosus to quantify burrow oxygen uptake rates and subsequent contribution to sediment oxygen demand in central Lake Erie. Burrow oxygen uptake and water flow velocities through burrows were measured using oxygen microelectrodes and hot film anemometry, respectively. Burrow oxygen consumption averaged 2.66 × 10− 10 (SE = ± 7.82 × 10− 11) mol O2/burrow/s at 24 °C and 9.64 × 10− 10 (SE = ± 4.86 × 10− 10) mol O2/burrow/s at 15 °C. In sealed microcosm experiments, larvae increased SOD 500% at 24 °C (density = 1508/m2) and 375% at 15 °C (density = 864/m2). To further evaluate effects of densities of C. plumosus burrows on SOD we developed a 3-D transport reaction model of the process. Using experimental data and chironomid abundance data in faunal surveys in 2009 and 2010, we estimated that bioirrigation by a population of 140 larvae/m2 could account for between 2.54 × 10− 11 mol/L/s (model results) and 5.58 × 10− 11 mol/L/s (experimental results) of the average 4.22 × 10− 11 mol/L/s oxygen depletion rate between 1970 and 2003, which could have accounted for 60–132% of the oxygen decline. At present, it appears that the population density of this species may be an important factor in development of hypoxic or anoxic conditions in central Lake Erie.

Lime-mud layers in high-energy tidal channels: A record of hurricane deposition

NASA Astrophysics Data System (ADS)

Shinn, Eugene A.; Steinen, Randolph P.; Dill, Robert F.; Major, Richard

1993-07-01

During or immediately following the transit of Hurricane Andrew (August 23-24, 1992) across the northern part of the Great Bahama Bank, thin laminated beds of carbonate mud were deposited in high-energy subtidal channels (4 m depth) through the ooid shoals of south Cat Cay and Joulters Cays. During our reconnaissance seven weeks later, we observed lime-mud beds exposed in the troughs of submarine oolite dunes and ripples. The mud layers were underlain and locally covered by ooid sand. The mud beds were lenticular and up to 5 cm thick. Their bases cast the underlying rippled surface. The layers were composed of soft silt- and sand-sized pellets and peloids and in some areas contained freshly preserved Thalassia blades and other organic debris along planes of lamination. The beds had a gelatinous consistency and locally had been penetrated by burrowers and plants. Layers of lime mud had also settled on bioturbated, plant-stabilized flats and in lagoonal settings but were quickly reworked and made unrecognizable by the burrowing of organisms. Thicker, more cohesive (and therefore older) mud beds and angular mud fragments associated with ooids from Joulters Cays have similar characteristics but lack fresh plant fragments. We infer that these older beds were similarly deposited and thus record the passage of previous hurricanes or tropical storms. Storm layers are preserved within channel sediments because migrating ooids prevent attack by the burrowing activity off organisms.

7 CFR 612.3 - Data collected and forecasts.

Code of Federal Regulations, 2010 CFR

2010-01-01

..., DEPARTMENT OF AGRICULTURE CONSERVATION OPERATIONS SNOW SURVEYS AND WATER SUPPLY FORECASTS § 612.3 Data..., and wind. (b) Water supply forecasts in the western states area are generally made monthly from.... Data sites generally include a snow course where both snow depth and water equivalent of snow are...

Cross-centre replication of suppressed burrowing behaviour as an ethologically relevant pain outcome measure in the rat: a prospective multicentre study.

PubMed

Wodarski, Rachel; Delaney, Ada; Ultenius, Camilla; Morland, Rosie; Andrews, Nick; Baastrup, Catherine; Bryden, Luke A; Caspani, Ombretta; Christoph, Thomas; Gardiner, Natalie J; Huang, Wenlong; Kennedy, Jeffrey D; Koyama, Suguru; Li, Dominic; Ligocki, Marcin; Lindsten, Annika; Machin, Ian; Pekcec, Anton; Robens, Angela; Rotariu, Sanziana M; VoB, Sabrina; Segerdahl, Marta; Stenfors, Carina; Svensson, Camilla I; Treede, Rolf-Detlef; Uto, Katsuhiro; Yamamoto, Kazumi; Rutten, Kris; Rice, Andrew S C

2016-10-01

Burrowing, an ethologically relevant rodent behaviour, has been proposed as a novel outcome measure to assess the global impact of pain in rats. In a prospective multicentre study using male rats (Wistar, Sprague-Dawley), replication of suppressed burrowing behaviour in the complete Freund adjuvant (CFA)-induced model of inflammatory pain (unilateral, 1 mg/mL in 100 µL) was evaluated in 11 studies across 8 centres. Following a standard protocol, data from participating centres were collected centrally and analysed with a restricted maximum likelihood-based mixed model for repeated measures. The total population (TP-all animals allocated to treatment; n = 249) and a selected population (SP-TP animals burrowing over 500 g at baseline; n = 200) were analysed separately, assessing the effect of excluding "poor" burrowers. Mean baseline burrowing across studies was 1113 g (95% confidence interval: 1041-1185 g) for TP and 1329 g (1271-1387 g) for SP. Burrowing was significantly suppressed in the majority of studies 24 hours (7 studies/population) and 48 hours (7 TP, 6 SP) after CFA injections. Across all centres, significantly suppressed burrowing peaked 24 hours after CFA injections, with a burrowing deficit of -374 g (-479 to -269 g) for TP and -498 g (-609 to -386 g) for SP. This unique multicentre approach first provided high-quality evidence evaluating suppressed burrowing as robust and reproducible, supporting its use as tool to infer the global effect of pain on rodents. Second, our approach provided important informative value for the use of multicentre studies in the future.

Effect of environmental conditions on variation in the sediment-water interface created by complex macrofaunal burrows on a tidal flat

NASA Astrophysics Data System (ADS)

Koo, Bon Joo; Kwon, Kae Kyoung; Hyun, Jung-Ho

2007-11-01

We quantified the increase in the sediment-water interface created by the burrowing activities of the resident macrofaunal community and its variation with respect to the physical conditions of the habitat on a tidal fat. We investigated environmental factors and dimensions of macrofaunal burrows with respect to tidal height and vegetation during spring and summer at three sites. A resin-casting method was used to quantify the dimensions of all burrows at each site. The dimensions of macrofaunal burrows varied both temporally and spatially and the increase in the sediment-water interface reached a maximum of 311%, ranging from 20 to 255% under different habitat conditions. The sediment-water interface depended on the duration of exposure resulting from tidal height, increased temperatures resulting from seasonality, and marsh plant density. Burrows were deeper and more expansive at both higher tidal levels and higher temperatures in summer. Burrow dimensions were sharply reduced with the disappearance of adult macrofauna in areas where the roots of the marsh plant Suaeda japonica were dense. The significance of this study lies in quantifying the burrow dimensions of the entire macrofaunal community, rather than just a single population, and confirming their spatial and temporal variation with respect to physical conditions of the habitat. Environmental factors responsible for variation in burrow dimensions are discussed.

The influence of small mammal burrowing activity on water storage at the Hanford Site

DOE Office of Scientific and Technical Information (OSTI.GOV)

Landeen, D.S.

The amount and rate at which water may penetrate a protective barrier and come into contact with buried radioactive waste is a major concern. Because burrowing animals eventually will reside on the surface of any protective barrier, the effect these burrow systems may have on the loss or retention of water needs to be determined. The first section of this document summarizes the known literature relative to small mammals and the effects that burrowing activities have on water distribution, infiltration, and the overall impact of burrows on the ecosystem. Topics that are summarized include burrow air pressures, airflow, burrow humidity,more » microtopography, mounding, infiltration, climate, soil evaporation, and discussions of large pores relative to water distribution. The second section of this document provides the results of the study that was conducted at the Hanford Site to determine what effect small mammal burrows have on water storage. This Biointrusion task is identified in the Permanent Isolation Surface Barrier Development Plan in support of protective barriers. This particular animal intrusion task is one part of the overall animal intrusion task identified in Animal Intrusion Test Plan.« less

Amplification and spectral shifts of vocalizations inside burrows of the frog Eupsophus calcaratus (Leptodactylidae)

NASA Astrophysics Data System (ADS)

Penna, Mario

2004-08-01

A variety of animals that communicate by sound emit signals from sites favoring their propagation, thereby increasing the range over which these sounds convey information. A different significance of calling sites has been reported for burrowing frogs Eupsophus emiliopugini from southern Chile: the cavities from which these frogs vocalize amplify conspecific vocalizations generated externally, thus providing a means to enhance the reception of neighbor's vocalizations in chorusing aggregations. In the current study the amplification of vocalizations of a related species, E. calcaratus, is investigated, to explore the extent of sound enhancement reported previously. Advertisement calls broadcast through a loudspeaker placed in the vicinity of a burrow, monitored with small microphones, are amplified by up to 18 dB inside cavities relative to outside. The fundamental resonant frequency of burrows, measured with broadcast noise and pure tones, ranges from 842 to 1836 Hz and is significantly correlated with the burrow's length. Burrows change the spectral envelope of incoming calls by increasing the amplitude of lower relative to higher harmonics. The call amplification effect inside burrows of E. calcaratus parallels the effect reported previously for E. emiliopugini, and indicates that the acoustic properties of calling sites may affect signal reception by burrowing animals.

Amplification and spectral shifts of vocalizations inside burrows of the frog Eupsophus calcaratus (Leptodactylidae).

PubMed

Penna, Mario

2004-08-01

A variety of animals that communicate by sound emit signals from sites favoring their propagation, thereby increasing the range over which these sounds convey information. A different significance of calling sites has been reported for burrowing frogs Eupsophus emiliopugini from southern Chile: the cavities from which these frogs vocalize amplify conspecific vocalizations generated externally, thus providing a means to enhance the reception of neighbor's vocalizations in chorusing aggregations. In the current study the amplification of vocalizations of a related species, E. calcaratus, is investigated, to explore the extent of sound enhancement reported previously. Advertisement calls broadcast through a loudspeaker placed in the vicinity of a burrow, monitored with small microphones, are amplified by up to 18 dB inside cavities relative to outside. The fundamental resonant frequency of burrows, measured with broadcast noise and pure tones, ranges from 842 to 1836 Hz and is significantly correlated with the burrow's length. Burrows change the spectral envelope of incoming calls by increasing the amplitude of lower relative to higher harmonics. The call amplification effect inside burrows of E. calcaratus parallels the effect reported previously for E. emiliopugini, and indicates that the acoustic properties of calling sites may affect signal reception by burrowing animals.

Use of burrow entrances to indicate densities of Townsend's ground squirrels

USGS Publications Warehouse

Van Horne, Beatrice; Schooley, Robert L.; Knick, Steven T.; Olson, G.S.; Burnham, K.P.

1997-01-01

Counts of burrow entrances have been positively correlated with densities of semi-fossorial rodents and used as an index of densities. We evaluated their effectiveness in indexing densities of Townsend's ground squirrels (Spermophilus townsendii) in the Snake River Birds of Prey National Conservation Area (SRBOPNCA), Idaho, by comparing burrow entrance densities to densities of ground squirrels estimated from livetrapping in 2 consecutive years over which squirrel populations declined by >75%. We did not detect a consistent relation between burrow entrance counts and ground squirrel density estimates within or among habitat types. Scatter plots indicated that burrow entrances had little predictive power at intermediate densities. Burrow entrance counts did not reflect the magnitude of a between-year density decline. Repeated counts of entrances late in the squirrels' active season varied in a manner that would be difficult to use for calibration of transects sampled only once during this period. Annual persistence of burrow entrances varied between habitats. Trained observers were inconsistent in assigning active-inactive status to entrances. We recommend that burrow entrance counts not be used as measures or indices of ground squirrel densities in shrubsteppe habitats, and that the method be verified thoroughly before being used in other habitats.

The ecology of fiddler crab Uca forcipata in mangrove forest

NASA Astrophysics Data System (ADS)

Mokhtari, Mohammad; Ghaffar, Mazlan Abd; Usup, Gires; Cob, Zaidi Che

2013-11-01

Fiddler crab burrows increase oxygen dispersion in anoxic mangrove sediment and promote iron reduction and nitrification process over sulfate reduction in subsurface sediment. Therefore it is expected to accelerate decomposition rate under oxic and suboxic conditions. In this study the effect of environmental parameters on the local distribution of U. forcipata and subsequently the effect of crab burrows on sediment characteristics were investigated. Our result indicated that U. forcipata prefers to live in the open mudflats under the shade of mangrove trees. The most important factors determining their presence were sediment texture, porosity, organic content, water content, carbon content and temperature. Measurement of redox potential and iron pools clearly indicated a distinct oxidized layer around burrows although sediment porosity, organic and water content did not differ significantly between burrowed and non-burrowed mudflats and even among the burrow profiles. This result implies the oxidation created by burrowing activity of U .forcipata was not efficient to change physical properties of mangrove sediments.

Baited lines: An active nondestructive collection method for burrowing crayfish

USGS Publications Warehouse

Loughman, Zachary J.; Foltz, David A.; Welsh, Stuart A.

2013-01-01

A new method (baited lines) is described for the collection of burrowing crayfishes, where fishing hooks baited with earthworms and tied to monofilament leaders are used to lure crayfishes from their burrow entrances. We estimated capture rates using baited lines at four locations across West Virginia for a total of four crayfish taxa; the taxa studied were orange, blue, and blue/orange morphs of Cambarus dubius (Upland Burrowing Catfish), and C. thomai (Little Brown Mudbug). Baited-line capture rates were lowest for C. thomai (81%; n = 21 attempts) and highest for the orange morph ofC. dubius (99%; n = 13 attempts). The pooled capture rate across all taxa was 91.5% (n = 50 attempts). Baited lines represent an environmentally nondestructive method to capture burrowing crayfishes without harm to individuals, and without disturbing burrows or the surrounding area. This novel method allows for repeat captures and long-term studies, providing a useful sampling method for ecological studies of burrowing crayfishes.

Burrowing Owl Monitoring Report for Calendar Year 2012

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wilde, Justin W.; Lindsey, Cole T.; Nugent, John J.

The monitoring during 2012 focused on documenting the status of known burrows. Newly identified burrows were documented while examining historical locations, during ecological resource reviews, or discovered during other monitoring efforts. The timing of the monitoring effort allowed staff to perform the surveys without disrupting any breeding or hatching, while also allowing for easy discernment of adults from juveniles, which helped in determining burrow-use type.

The role of mounds in promoting water-exchange in the egg-tending burrows of monogamous goby, Valenciennea longipinnis (Lay et Bennett).

PubMed

Takegaki; Nakazono

2000-10-25

Valenciennea longipinnis spawns monogamously in a burrow. After spawning, the paired female constructs a conspicuous mound on the burrow by carrying and piling up substratum-derived materials while the male tends eggs in the burrow until hatching occurs. In this study, the mounds of V. longipinnis were tested in the field to confirm their function of promoting water-exchange in the burrow, and their ecological role was examined in relation to egg care by the male. The mound of V.longipinnis promoted water-exchange in the burrow, contributing to the provision of external oxygenated sea water into the burrow. Therefore, dissolved oxygen (DO) concentrations in the burrow with a mound were significantly higher than those without a mound. Although male egg-tending behaviour (e.g., fanning) may also promote water-exchange in the burrow, the water-exchange appeared to depend mainly on the hydrodynamic effect. Removals of the mound and paired female on the day of spawning led to high rates of egg-desertion by males. Since the frequency and time of fanning increase with a decrease of DO concentration in the burrow, the egg-desertion may result from an increased parental cost to males due to the decrease of water-exchange without a mound. This was supported by the fact that the DO concentrations on the day after mound removal were significantly lower in the egg-deserted burrows (measured before desertions) than in burrows not deserted by the male. Moreover, removals of paired females only also led to higher desertion rates. After removal of the female, the mound gradually collapsed by wave action and other factors, and the surface of the mound was covered with planktonic materials. Such a mound of poor quality may provide little water-exchange, which may lead to the egg-desertion by males. These results indicated that mound maintenance by females during the egg-tending period has an important role in the success of parental care by males.

River bank burrowing by invasive crayfish: Spatial distribution, biophysical controls and biogeomorphic significance.

PubMed

Faller, Matej; Harvey, Gemma L; Henshaw, Alexander J; Bertoldi, Walter; Bruno, Maria Cristina; England, Judy

2016-11-01

Invasive species generate significant global environmental and economic costs and represent a particularly potent threat to freshwater systems. The biogeomorphic impacts of invasive aquatic and riparian species on river processes and landforms remain largely unquantified, but have the potential to generate significant sediment management issues within invaded catchments. Several species of invasive (non-native) crayfish are known to burrow into river banks and visual evidence of river bank damage is generating public concern and media attention. Despite this, there is a paucity of understanding of burrow distribution, biophysical controls and the potential significance of this problem beyond a small number of local studies at heavily impacted sites. This paper presents the first multi-catchment analysis of this phenomenon, combining existing data on biophysical river properties and invasive crayfish observations with purpose-designed field surveys across 103 river reaches to derive key trends. Crayfish burrows were observed on the majority of reaches, but burrowing tended to be patchy in spatial distribution, concentrated in a small proportion (<10%) of the length of rivers surveyed. Burrow distribution was better explained by local bank biophysical properties than by reach-scale properties, and burrowed banks were more likely to be characterised by cohesive bank material, steeper bank profiles with large areas of bare bank face, often on outer bend locations. Burrow excavation alone has delivered a considerable amount of sediment to invaded river systems in the surveyed sites (3tkm(-1) impacted bank) and this represents a minimum contribution and certainly an underestimate of the absolute yield (submerged burrows were not recorded). Furthermore, burrowing was associated with bank profiles that were either actively eroding or exposed to fluvial action and/or mass failure processes, providing the first quantitative evidence that invasive crayfish may cause or accelerate river bank instability and erosion in invaded catchments beyond the scale of individual burrows. Copyright © 2016 Elsevier B.V. All rights reserved.

Using a cross correlation technique to refine the accuracy of the Failure Forecast Method: Application to Soufrière Hills volcano, Montserrat

NASA Astrophysics Data System (ADS)

Salvage, R. O.; Neuberg, J. W.

2016-09-01

Prior to many volcanic eruptions, an acceleration in seismicity has been observed, suggesting the potential for this as a forecasting tool. The Failure Forecast Method (FFM) relates an accelerating precursor to the timing of failure by an empirical power law, with failure being defined in this context as the onset of an eruption. Previous applications of the FFM have used a wide variety of accelerating time series, often generating questionable forecasts with large misfits between data and the forecast, as well as the generation of a number of different forecasts from the same data series. Here, we show an alternative approach applying the FFM in combination with a cross correlation technique which identifies seismicity from a single active source mechanism and location at depth. Isolating a single system at depth avoids additional uncertainties introduced by averaging data over a number of different accelerating phenomena, and consequently reduces the misfit between the data and the forecast. Similar seismic waveforms were identified in the precursory accelerating seismicity to dome collapses at Soufrière Hills volcano, Montserrat in June 1997, July 2003 and February 2010. These events were specifically chosen since they represent a spectrum of collapse scenarios at this volcano. The cross correlation technique generates a five-fold increase in the number of seismic events which could be identified from continuous seismic data rather than using triggered data, thus providing a more holistic understanding of the ongoing seismicity at the time. The use of similar seismicity as a forecasting tool for collapses in 1997 and 2003 greatly improved the forecasted timing of the dome collapse, as well as improving the confidence in the forecast, thereby outperforming the classical application of the FFM. We suggest that focusing on a single active seismic system at depth allows a more accurate forecast of some of the major dome collapses from the ongoing eruption at Soufrière Hills volcano, and provides a simple addition to the well-used methodology of the FFM.

Regional early flood warning system: design and implementation

NASA Astrophysics Data System (ADS)

Chang, L. C.; Yang, S. N.; Kuo, C. L.; Wang, Y. F.

2017-12-01

This study proposes a prototype of the regional early flood inundation warning system in Tainan City, Taiwan. The AI technology is used to forecast multi-step-ahead regional flood inundation maps during storm events. The computing time is only few seconds that leads to real-time regional flood inundation forecasting. A database is built to organize data and information for building real-time forecasting models, maintaining the relations of forecasted points, and displaying forecasted results, while real-time data acquisition is another key task where the model requires immediately accessing rain gauge information to provide forecast services. All programs related database are constructed in Microsoft SQL Server by using Visual C# to extracting real-time hydrological data, managing data, storing the forecasted data and providing the information to the visual map-based display. The regional early flood inundation warning system use the up-to-date Web technologies driven by the database and real-time data acquisition to display the on-line forecasting flood inundation depths in the study area. The friendly interface includes on-line sequentially showing inundation area by Google Map, maximum inundation depth and its location, and providing KMZ file download of the results which can be watched on Google Earth. The developed system can provide all the relevant information and on-line forecast results that helps city authorities to make decisions during typhoon events and make actions to mitigate the losses.

Cross-centre replication of suppressed burrowing behaviour as an ethologically relevant pain outcome measure in the rat: a prospective multicentre study

PubMed Central

Wodarski, Rachel; Delaney, Ada; Ultenius, Camilla; Morland, Rosie; Andrews, Nick; Baastrup, Catherine; Bryden, Luke A.; Caspani, Ombretta; Christoph, Thomas; Gardiner, Natalie J.; Huang, Wenlong; Kennedy, Jeffrey D.; Koyama, Suguru; Li, Dominic; Ligocki, Marcin; Lindsten, Annika; Machin, Ian; Pekcec, Anton; Robens, Angela; Rotariu, Sanziana M.; Voß, Sabrina; Segerdahl, Marta; Stenfors, Carina; Svensson, Camilla I.; Treede, Rolf-Detlef; Uto, Katsuhiro; Yamamoto, Kazumi; Rutten, Kris; Rice, Andrew S.C.

2016-01-01

Abstract Burrowing, an ethologically relevant rodent behaviour, has been proposed as a novel outcome measure to assess the global impact of pain in rats. In a prospective multicentre study using male rats (Wistar, Sprague-Dawley), replication of suppressed burrowing behaviour in the complete Freund adjuvant (CFA)-induced model of inflammatory pain (unilateral, 1 mg/mL in 100 µL) was evaluated in 11 studies across 8 centres. Following a standard protocol, data from participating centres were collected centrally and analysed with a restricted maximum likelihood-based mixed model for repeated measures. The total population (TP—all animals allocated to treatment; n = 249) and a selected population (SP—TP animals burrowing over 500 g at baseline; n = 200) were analysed separately, assessing the effect of excluding “poor” burrowers. Mean baseline burrowing across studies was 1113 g (95% confidence interval: 1041-1185 g) for TP and 1329 g (1271-1387 g) for SP. Burrowing was significantly suppressed in the majority of studies 24 hours (7 studies/population) and 48 hours (7 TP, 6 SP) after CFA injections. Across all centres, significantly suppressed burrowing peaked 24 hours after CFA injections, with a burrowing deficit of −374 g (−479 to −269 g) for TP and −498 g (−609 to −386 g) for SP. This unique multicentre approach first provided high-quality evidence evaluating suppressed burrowing as robust and reproducible, supporting its use as tool to infer the global effect of pain on rodents. Second, our approach provided important informative value for the use of multicentre studies in the future. PMID:27643836

Big maggots dig deeper: size-dependent larval dispersal in flies.

PubMed

Davis, Jeremy M; Coogan, Laura E; Papaj, Daniel R

2015-09-01

The ability of individual animals to select habitats optimal for development and survival can be constrained by the costs of moving through the environment. Animals that seek overwintering sites underground, for example, may be constrained by the energy required to burrow into the soil. We conducted field and laboratory studies to determine the relationship between individual size and overwintering site selection in the tephritid flies, Rhagoletis juglandis and Rhagoletis suavis. We also explored the effect of site selection on pupal mortality, parasitism, and the ability to emerge from overwintering sites after eclosion. In both species, and in both lab and field tests, larger pupae were found at deeper soil depths. In addition, marginally non-significant trends indicated pupae in deeper sites were 48% more likely to survive the overwintering period. Finally, larger individuals were more likely to eclose and emerge from the soil at a given depth, but flies in deep overwintering sites were less likely to emerge from those sites than flies in shallow sites. Our data indicate that overwintering site selection represents a trade-off between avoiding predators and parasites that occur at shallow sites, and the energetic and mortality costs of burrowing to, overwintering in, and emerging from, deeper sites. The size-dependent overwintering site selection demonstrated here has implications for population dynamics and pest control strategies. Some fly control measures, such as the introduction of parasites or predators, will be mitigated when the deepest and least accessible overwintering pupae represent a disproportionately large amount of the population's reproductive capacity.

The vibrational signals that male fiddler crabs ( Uca lactea) use to attract females into their burrows

NASA Astrophysics Data System (ADS)

Takeshita, Fumio; Murai, Minoru

2016-06-01

In some fiddler crab species, males emit vibrations from their burrows to mate-searching females after they have attracted a female to the burrow entrance using a waving display. Although the vibrations are considered acoustic signals to induce mating, it has not been demonstrated whether the vibrations attract the females into the burrow and, consequently, influence females' mating decisions. We investigated the structures and patterns of the vibrations using a dummy female and demonstrated experimentally a female preference for male vibrations in Uca lactea in the field. The acoustic signals consisted of repetitions of pulses. The dominant frequency of the pulses decreased with male carapace width. The pulse length decreased slightly with an increasing number of vibrational repetitions, and the pulse interval increased with increasing repetitions. These factors imply that the vibrations convey information on male characteristics, such as body size and stamina. In the experiment on female mate choice, the females significantly preferred males with higher pulse repetition rates when they were positioned at the entrance of the burrow, indicating that the females use the male vibrational signals to decide whether to enter the burrow. However, females showed no preference for the vibrations once they were inside a burrow, i.e., whether they decided to copulate, suggesting that the vibrations do not independently affect a female's final decision of mate choice. The vibrations inside the burrow might influence a female's decision by interaction with other male traits such as the burrow structure.

Synchrotron Reveals Early Triassic Odd Couple: Injured Amphibian and Aestivating Therapsid Share Burrow

PubMed Central

Fernandez, Vincent; Abdala, Fernando; Carlson, Kristian J.; Cook, Della Collins; Rubidge, Bruce S.; Yates, Adam; Tafforeau, Paul

2013-01-01

Fossorialism is a beneficial adaptation for brooding, predator avoidance and protection from extreme climate. The abundance of fossilised burrow casts from the Early Triassic of southern Africa is viewed as a behavioural response by many tetrapods to the harsh conditions following the Permo-Triassic mass-extinction event. However, scarcity of vertebrate remains associated with these burrows leaves many ecological questions unanswered. Synchrotron scanning of a lithified burrow cast from the Early Triassic of the Karoo unveiled a unique mixed-species association: an injured temnospondyl amphibian (Broomistega) that sheltered in a burrow occupied by an aestivating therapsid (Thrinaxodon). The discovery of this rare rhinesuchid represents the first occurrence in the fossil record of a temnospondyl in a burrow. The amphibian skeleton shows signs of a crushing trauma with partially healed fractures on several consecutive ribs. The presence of a relatively large intruder in what is interpreted to be a Thrinaxodon burrow implies that the therapsid tolerated the amphibian’s presence. Among possible explanations for such unlikely cohabitation, Thrinaxodon aestivation is most plausible, an interpretation supported by the numerous Thrinaxodon specimens fossilised in curled-up postures. Recent advances in synchrotron imaging have enabled visualization of the contents of burrow casts, thus providing a novel tool to elucidate not only anatomy but also ecology and biology of ancient tetrapods. PMID:23805181

No pain, no gain: Male plasticity in burrow digging according to female rejection in a sand-dwelling wolf spider.

PubMed

Carballo, Matilde; Baldenegro, Fabiana; Bollatti, Fedra; Peretti, Alfredo V; Aisenberg, Anita

2017-07-01

Behavioral plasticity allows individuals to reversibly respond to short-term variations in their ecological and social environment in order to maximize their fitness. Allocosa senex is a burrow-digging spider that inhabits the sandy coasts of South America. This species shows a reversal in typical sex roles expected in spiders: females are wanderers that visit males at their burrows and initiate courtship. They prefer males with long burrows for mating, and males prefer virgin over mated females. We tested whether female sexual rejection induced males to enlarge their burrows and if female reproductive status affected males' responses. We exposed males who had constructed burrows to: a) virgin females or b) mated females, (n=16 for each category). If female rejection occurred, we repeated the trial 48h later with the same female. As control, we maintained a group of males without female exposure (unexposed group, n=32). Rejected males enlarged their burrows more frequently and burrows were longer compared to unexposed males. However, frequency and length of enlargement did not differ according to female reproductive status. Males of A. senex showed plasticity in digging behavior in response to the availability of females, as a way to maximize the possibilities of future mating. Copyright © 2017 Elsevier B.V. All rights reserved.

The biomechanics of burrowing and boring.

PubMed

Dorgan, Kelly M

2015-01-15

Burrowers and borers are ecosystem engineers that alter their physical environments through bioturbation, bioirrigation and bioerosion. The mechanisms of moving through solid substrata by burrowing or boring depend on the mechanical properties of the medium and the size and morphology of the organism. For burrowing animals, mud differs mechanically from sand; in mud, sediment grains are suspended in an organic matrix that fails by fracture. Macrofauna extend burrows through this elastic mud by fracture. Sand is granular and non-cohesive, enabling grains to more easily move relative to each other, and macrofaunal burrowers use fluidization or plastic rearrangement of grains. In both sand and mud, peristaltic movements apply normal forces and reduce shear. Excavation and localized grain compaction are mechanisms that plastically deform sediments and are effective in both mud and sand, with bulk excavation being used by larger organisms and localized compaction by smaller organisms. Mechanical boring of hard substrata is an extreme form of excavation in which no compaction of burrow walls occurs and grains are abraded with rigid, hard structures. Chemical boring involves secretion to dissolve or soften generally carbonate substrata. Despite substantial differences in the mechanics of the media, similar burrowing behaviors are effective in mud and sand. © 2015. Published by The Company of Biologists Ltd.

N2 production and fixation in deep-tier burrows of Squilla empusa in muddy sediments of Great Peconic Bay

NASA Astrophysics Data System (ADS)

Waugh, Stuart; Aller, Robert C.

2017-11-01

Global marine N budgets often show deficits due to dominance of benthic N2 production relative to pelagic N2 fixation. Recent studies have argued that benthic N2 fixation in shallow water environments has been underestimated. In particular, N2 fixation associated with animal burrows may be significant as indicated by high rates of N2 fixation reported in muddy sands populated by the ghost shrimp, Neotrypaea californiensis (Bertics et al., 2010). We investigated whether N2 fixation occurs at higher rates in the burrow-walls of the deep-burrowing ( 0.5-4 m) mantis shrimp, Squilla empusa, compared to ambient, estuarine muds and measured seasonal in-situ N2 concentrations in burrow-water relative to bottom-water. Acetylene reduction assays showed lower N2 fixation in burrow-walls than in un-populated sediments, likely due to inhibitory effects of O2 on ethylene production. Dissolved N2 was higher in burrow-water than proximate bottom-water at all seasons, demonstrating a consistent balance of net N2 production relative to fixation in deep-tier biogenic structures.

Spilled oil and infaunal activity - Modification of burrowing behavior and redistribution of oil

USGS Publications Warehouse

Clifton, H.E.; Kvenvolden, K.A.; Rapp, J.B.

1984-01-01

A series of experiments in Willapa Bay, Washington, indicates the degree to which the presence of spilled oil modifies the burrowing behavior of infauna and the extent to which the animals redistribute oil into intertidal sediment. Small amounts of North Slope crude oil introduced at low tide directly into burrow openings (mostly made by the crustacean Callianassa) resulted in a limited and temporary reduction in the number of burrow openings. In contrast, a layer of oil-saturated sand 1 cm thick buried about 5 cm below the sediment surface sharply reduced the number of burrow openings. After a year, the few new burrows penetrated only the margins of the experimental plot, and bioturbation below the buried oil-saturated sand layer declined dramatically. The experiments suggest that small amounts of oil temporarily stranded by tides in themselves have no long-range effect on burrowing behavior. The fauna, however, are capable of introducing measurable amounts of oil into the subsurface, where it is retained long after the rest of the stranded oil had washed away. A buried layer of oil-saturated sand greatly reduces infaunal activity; the oil presents an effective barrier that can persist for years. The oil incorporated into the sediment from burrow openings showed evidence of degradation after 7 months. In contrast the layer of buried oil remained essentially undergraded after a period of two years, even though oil in lower concentrations above the layer was degraded after a period of one year. This variation in degree of degradation of the buried oil, as well as the heterogeneity of oil distribution wherever the oil has been incorporated from the surface, emphasises the importance of careful sampling in any attempt to locate or monitor the presence of spilled oil in the substrate.In a series of experiments in Willapa Bay, Washington, small amounts of North Slope crude oil introduced at low tide directly into burrow openings resulted in a limited and temporary reduction in the number of burrow openings. In contrast, a layer of oil-saturated sand 1 cm thick buried about 5 cm below the sediment surface sharply reduced the number of burrow openings. After a year, the few new burrows penetrated only the margins of the experimental plot, and bioturbation below the buried oil-saturated sand layer declined dramatically. The experiments suggest that small amounts of oil temporarily stranded by tides in themselves have no long-range effect on burrowing behavior. The oil incorporated into the sediment from burrow openings showed evidence of degradation after 17 months. In contrast, the layer of buried oil remained essentially undegraded after a period of two years. Refs.

Black-footed ferrets and recreational shooting influence the attributes of black-tailed prairie dog burrows

USGS Publications Warehouse

Biggins, Dean E.; Ramakrishnan, Shantini; Goldberg, Amanda R.; Eads, David A.

2012-01-01

Black-tailed prairie dogs (Cynomys ludovicianus) plug burrows occupied by black-footed ferrets (Mustela nigripes), and they also plug burrows to entomb dead prairie dogs. We further evaluated these phenomena by sampling connectivity and plugging of burrow openings on prairie dog colonies occupied by ferrets, colonies where recreational shooting was allowed, and colonies with neither shooting nor ferrets. We counted burrow openings on line surveys and within plots, classified surface plugging, and used an air blower to examine subsurface connectivity. Colonies with ferrets had lower densities of openings, fewer connected openings (suggesting increased subsurface plugging), and more surface plugs compared to colonies with no known ferrets. Colonies with recreational shooting had the lowest densities of burrow openings, and line-survey data suggested colonies with shooting had intermediate rates of surface plugging. The extent of surface and subsurface plugging could have consequences for the prairie dog community by changing air circulation and escape routes of burrow systems and by altering energetic relationships. Burrow plugging might reduce prairie dogs' risk of predation by ferrets while increasing risk of predation by American badgers (Taxidea taxus); however, the complexity of the trade-off is increased if plugging increases the risk of predation on ferrets by badgers. Prairie dogs expend more energy plugging and digging when ferrets or shooting are present, and ferrets increase their energy expenditures when they dig to remove those plugs. Microclimatic differences in plugged burrow systems may play a role in flea ecology and persistence of the flea-borne bacterium that causes plague (Yersinia pestis).

Nest site characteristics, nesting movements, and lack of long-term nest site fidelity in Agassiz's desert tortoises at a wind energy facility in southern California

USGS Publications Warehouse

Lovich, Jeffrey E.; Agha, Mickey; Yackulic, Charles B.; Meyer-Wilkins, Kathie; Bjurlin, Curtis; Ennen, Joshua R.; Arundel, Terry R.; Austin, Meaghan

2014-01-01

Nest site selection has important consequences for maternal and offspring survival and fitness. Females of some species return to the same nesting areas year after year. We studied nest site characteristics, fidelity, and daily pre-nesting movements in a population of Agassiz’s desert tortoises (Gopherus agassizii) at a wind energy facility in southern California during two field seasons separated by over a decade. No females returned to the same exact nest site within or between years but several nested in the same general area. However, distances between first and second clutches within a year (2000) were not significantly different from distances between nests among years (2000 and 2011) for a small sample of females, suggesting some degree of fidelity within their normal activity areas. Environmental attributes of nest sites did not differ significantly among females but did among years due largely to changes in perennial plant structure as a result of multiple fires. Daily pre-nesting distances moved by females decreased consistently from the time shelled eggs were first visible in X-radiographs until oviposition, again suggesting some degree of nest site selection. Tortoises appear to select nest sites that are within their long-term activity areas, inside the climate-moderated confines of one of their self-constructed burrows, and specifically, at a depth in the burrow that minimizes exposure of eggs and embryos to lethal incubation temperatures. Nesting in “climate-controlled” burrows and nest guarding by females relaxes some of the constraints that drive nest site selection in other oviparous species.

AIR QUALITY FORECAST VERIFICATION USING SATELLITE DATA

EPA Science Inventory

NOAA 's operational geostationary satellite retrievals of aerosol optical depths (AODs) were used to verify National Weather Service (NWS) experimental (research mode) particulate matter (PM2.5) forecast guidance issued during the summer 2004 International Consortium for Atmosp...

Field Assessment of Gopher Tortoise Habitat at Camp Shelby, MS. Phase II: Overstory and Combined Assessments

DTIC Science & Technology

2010-10-17

conditions between active, recently active and randomly selected non-burrow locations at this site. Field surveys were completed in three study areas ...at the installation. On average, burrow sites had a much higher overall occurrence of longleaf pine and significantly lower total basal area as...East Area burrow and non-burrow locations, Camp Shelby, MS 2007 .................. 10 2 Mean basal area per acre for pine and hardwood on T-44, Mars

Niche modeling predictions of the potential distribution of Marmota himalayana, the host animal of plague in Yushu County of Qinghai.

PubMed

Lu, Liang; Ren, Zhoupeng; Yue, Yujuan; Yu, Xiaotao; Lu, Shan; Li, Guichang; Li, Hailong; Wei, Jianchun; Liu, Jingli; Mu, You; Hai, Rong; Yang, Yonghai; Wei, Rongjie; Kan, Biao; Wang, Hu; Wang, Jinfeng; Wang, Zuyun; Liu, Qiyong; Xu, Jianguo

2016-02-24

After the earthquake on 14, April 2010 at Yushu in China, a plague epidemic hosted by Himalayan marmot (Marmota himalayana) became a major public health concern during the reconstruction period. A rapid assessment of the distribution of Himalayan marmot in the area was urgent. The aims of this study were to analyze the relationship between environmental factors and the distribution of burrow systems of the marmot and to predict the distribution of marmots. Two types of marmot burrows (hibernation and temporary) in Yushu County were investigated from June to September in 2011. The location of every burrow was recorded with a global positioning system receiver. An ecological niche model was used to determine the relationship between the burrow occurrence data and environmental variables, such as land surface temperature (LST) in winter and summer, normalized difference vegetation index (NDVI) in winter and summer, elevation, and soil type. The predictive accuracies of the models were assessed by the area under the curve of the receiving operator curve. The models for hibernation and temporary burrows both performed well. The contribution orders of the variables were LST in winter and soil type, NDVI in winter and elevation for the hibernation burrow model, and LST in summer, NDVI in summer, soil type and elevation in the temporary burrow model. There were non-linear relationships between the probability of burrow presence and LST, NDVI and elevation. LST of 14 and 23 °C, NDVI of 0.22 and 0.60, and 4100 m were inflection points. A substantially higher probability of burrow presence was observed in swamp soil and dark felty soil than in other soil types. The potential area for hibernation burrows was 5696 km(2) (37.7% of Yushu County), and the area for temporary burrows was 7711 km(2) (51.0% of Yushu County). The results suggested that marmots preferred warm areas with relatively low altitudes and good vegetation conditions in Yushu County. Based on these results, the present research is useful in understanding the niche selection and distribution pattern of marmots in this region.

Assessment of burrowing mammal impacts on paved highways in Montana.

DOT National Transportation Integrated Search

2010-12-01

The burrowing behavior of some rodents, insectivores, and mustelids has the potential to cause : damage to paved roads or exacerbate existing deterioration. The main objective of this project : was to characterize the nature and extent of burrowing m...

Development and implementation of a remote-sensing and in situ data-assimilating version of CMAQ for operational PM2.5 forecasting. Part 1: MODIS aerosol optical depth (AOD) data-assimilation design and testing.

PubMed

McHenry, John N; Vukovich, Jeffery M; Hsu, N Christina

2015-12-01

This two-part paper reports on the development, implementation, and improvement of a version of the Community Multi-Scale Air Quality (CMAQ) model that assimilates real-time remotely-sensed aerosol optical depth (AOD) information and ground-based PM2.5 monitor data in routine prognostic application. The model is being used by operational air quality forecasters to help guide their daily issuance of state or local-agency-based air quality alerts (e.g. action days, health advisories). Part 1 describes the development and testing of the initial assimilation capability, which was implemented offline in partnership with NASA and the Visibility Improvement State and Tribal Association of the Southeast (VISTAS) Regional Planning Organization (RPO). In the initial effort, MODIS-derived aerosol optical depth (AOD) data are input into a variational data-assimilation scheme using both the traditional Dark Target and relatively new "Deep Blue" retrieval methods. Evaluation of the developmental offline version, reported in Part 1 here, showed sufficient promise to implement the capability within the online, prognostic operational model described in Part 2. In Part 2, the addition of real-time surface PM2.5 monitoring data to improve the assimilation and an initial evaluation of the prognostic modeling system across the continental United States (CONUS) is presented. Air quality forecasts are now routinely used to understand when air pollution may reach unhealthy levels. For the first time, an operational air quality forecast model that includes the assimilation of remotely-sensed aerosol optical depth and ground based PM2.5 observations is being used. The assimilation enables quantifiable improvements in model forecast skill, which improves confidence in the accuracy of the officially-issued forecasts. This helps air quality stakeholders be more effective in taking mitigating actions (reducing power consumption, ride-sharing, etc.) and avoiding exposures that could otherwise result in more serious air quality episodes or more deleterious health effects.

Incorporation of microplastics from litter into burrows of Lumbricus terrestris.

PubMed

Huerta Lwanga, Esperanza; Gertsen, Hennie; Gooren, Harm; Peters, Piet; Salánki, Tamás; van der Ploeg, Martine; Besseling, Ellen; Koelmans, Albert A; Geissen, Violette

2017-01-01

Pollution caused by plastic debris is an urgent environmental problem. Here, we assessed the effects of microplastics in the soil surface litter on the formation and characterization of burrows built by the anecic earthworm Lumbricus terrestris in soil and quantified the amount of microplastics that was transported and deposited in L. terrestris burrows. Worms were exposed to soil surface litter treatments containing microplastics (Low Density Polyethylene) for 2 weeks at concentrations of 0%, 7%, 28%, 45% and 60%. The latter representing environmentally realistic concentrations found in hot spot soil locations. There were significantly more burrows found when soil was exposed to the surface treatment composed of 7% microplastics than in all other treatments. The highest amount of organic matter in the walls of the burrows was observed after using the treatments containing 28 and 45% microplastics. The highest microplastic bioturbation efficiency ratio (total microplastics (mg) in burrow walls/initial total surface litter microplastics (mg)) was found using the concentration of 7% microplastics, where L. terrestris introduced 73.5% of the surface microplastics into the burrow walls. The highest burrow wall microplastic content per unit weight of soil (11.8 ± 4.8 g kg- 1 ) was found using a concentration of 60% microplastics. L. terrestris was responsible for size-selective downward transport when exposed to concentrations of 7, 28 and 45% microplastics in the surface litter, as the fraction ≤50 μm microplastics in burrow walls increased by 65% compared to this fraction in the original surface litter plastic. We conclude that the high biogenic incorporation rate of the small-fraction microplastics from surface litter into burrow walls causes a risk of leaching through preferential flow into groundwater bodies. Furthermore, this leaching may have implications for the subsequent availability of microplastics to terrestrial organisms or for the transport of plastic-associated organic contaminants in soil. Copyright © 2016 Elsevier Ltd. All rights reserved.

Aerosol analysis and forecast in the European Centre for Medium-Range Weather Forecasts Integrated Forecast System: 2. Data assimilation

NASA Astrophysics Data System (ADS)

Benedetti, A.; Morcrette, J.-J.; Boucher, O.; Dethof, A.; Engelen, R. J.; Fisher, M.; Flentje, H.; Huneeus, N.; Jones, L.; Kaiser, J. W.; Kinne, S.; Mangold, A.; Razinger, M.; Simmons, A. J.; Suttie, M.

2009-07-01

This study presents the new aerosol assimilation system, developed at the European Centre for Medium-Range Weather Forecasts, for the Global and regional Earth-system Monitoring using Satellite and in-situ data (GEMS) project. The aerosol modeling and analysis system is fully integrated in the operational four-dimensional assimilation apparatus. Its purpose is to produce aerosol forecasts and reanalyses of aerosol fields using optical depth data from satellite sensors. This paper is the second of a series which describes the GEMS aerosol effort. It focuses on the theoretical architecture and practical implementation of the aerosol assimilation system. It also provides a discussion of the background errors and observations errors for the aerosol fields, and presents a subset of results from the 2-year reanalysis which has been run for 2003 and 2004 using data from the Moderate Resolution Imaging Spectroradiometer on the Aqua and Terra satellites. Independent data sets are used to show that despite some compromises that have been made for feasibility reasons in regards to the choice of control variable and error characteristics, the analysis is very skillful in drawing to the observations and in improving the forecasts of aerosol optical depth.

Videographic evidence of endangered species depredation by feral cat

USGS Publications Warehouse

Judge, Seth; Lippert, Jill S.; Misajon, Kathleen; Hu, Darcy; Hess, Steven C.

2012-01-01

Feral cats (Felis cafus) have long been implicated as nest predators of endangered 'Ua'u (Hawaiian Petrel; Pterodroma sandwichensis) on Hawaii Island, but until recently, visual confirmation has been limited by available technology. 'Ua'u nest out of view, deep inside small cavities, on alpine lava flows. During the breeding seasons of 2007 and 2008, we monitored known burrows within Hawai'i Volcanoes National Park. Digital infrared video cameras assisted in determining the breeding behaviour and nesting success at the most isolated of burrows. With 7 cameras, we collected a total of 819 videos and 89 still photographs of adult and nestling 'Ua'u at 14 burrows. Videos also confirmed the presence of rats (Rattus spp.) at 2 burrows, 'Ōmao (Myadestes obscurus) at 8 burrows, and feral cats at 6 burrows. A sequence of videos showed a feral cat taking a downy 'Ua'u chick from its burrow, representing the first direct evidence of 'Ua'u depredation by feral cat in Hawai'i. This technique provides greater understanding of feral cat behaviour in 'Ua'u colonies, which may assist in the development of more targeted management strategies to reduce nest predation on endangered insular bird species.

Fossil Worm Burrows Reveal Very Early Terrestrial Animal Activity and Shed Light on Trophic Resources after the End-Cretaceous Mass Extinction

PubMed Central

Chin, Karen; Pearson, Dean; Ekdale, A. A.

2013-01-01

The widespread mass extinctions at the end of the Cretaceous caused world-wide disruption of ecosystems, and faunal responses to the one-two punch of severe environmental perturbation and ecosystem collapse are still unclear. Here we report the discovery of in situ terrestrial fossil burrows from just above the impact-defined Cretaceous-Paleogene (K/Pg) boundary in southwestern North Dakota. The crisscrossing networks of horizontal burrows occur at the interface of a lignitic coal and silty sandstone, and reveal intense faunal activity within centimeters of the boundary clay. Estimated rates of sedimentation and coal formation suggest that the burrows were made less than ten thousand years after the end-Cretaceous impact. The burrow characteristics are most consistent with burrows of extant earthworms. Moreover, the burrowing and detritivorous habits of these annelids fit models that predict the trophic and sheltering lifestyles of terrestrial animals that survived the K/Pg extinction event. In turn, such detritus-eaters would have played a critical role in supporting secondary consumers. Thus, some of the carnivorous vertebrates that radiated after the K/Pg extinction may owe their evolutionary success to thriving populations of earthworms. PMID:23951041

Roles of air stored in burrows of the mudskipper Boleophthalmus pectinirostris for adult respiration and embryonic development.

PubMed

Toba, A; Ishimatsu, A

2014-03-01

Air was stored in 90% of Boleophthalmus pectinirostris burrows in summer breeding months when fish were active on the mudflat surface during low tide but only in 50% of burrows in overwintering months when the fish confined themselves to burrows. The volume of gas recovered from the burrows ranged from 30 to > 400 ml. The partial pressure of oxygen (PO₂) of the gas varied from 5 to 20 kPa and was inversely related to the partial pressure of carbon dioxide (PCO₂) in all but the wintering periods. Sampling in July demonstrated that gas was stored in both male and female burrows with no difference in volume, PO₂ or PCO₂ between them. Adult fish were able to survive total submersion in hypoxic (PO₂ = 1.96 kPa) water for 8 h, but no embryos survived to hatch in the hypoxic aquatic environment. Thus, the deposited air appears to be a crucial source of oxygen for the embryos developing in the egg chamber of the burrow, but may play only a subsidiary role for adult respiration during presumed high-tide confinement. © 2014 The Fisheries Society of the British Isles.

The evolution of soil-burrowing cockroaches (Blattaria: Blaberidae) from wood-burrowing ancestors following an invasion of the latter from Asia into Australia.

PubMed

Maekawa, Kiyoto; Lo, Nathan; Rose, Harley A; Matsumoto, Tadao

2003-06-22

Morphologically similar cockroaches in the subfamilies Panesthiinae and Geoscapheinae (Blattaria: Blaberidae) display contrasting feeding habits, behaviour and biogeographical distributions. Panesthiinae, found throughout Asia and Australia, all live in and feed on decaying wood that they burrow into. Geoscapheinae are restricted to Australia and construct and live in burrows in the soil, where they feed on dry leaves taken from the surface. A lack of knowledge about phylogenetic relationships among these cockroaches hinders an understanding of the factors that have shaped the evolution of their diverse lifestyles and biogeography. To address this issue, we sequenced three genes from representatives of nine of the 10 genera in the two subfamilies, and performed phylogenetic analyses. The well-supported topology revealed the Panesthiinae to be paraphyletic with respect to the Geoscapheinae. Soil-burrowing cockroaches appear to have evolved from a lineage of wood burrowers that invaded Australia from the north some time after the merging of the Asian and Australian tectonic plates ca. 20 Myr ago. The main factor promoting the evolution of soil burrowing is likely to have been one of the periods of strong aridity that Australia has experienced since the Miocene period.

Final Environmental Assessment Addressing the Construction, Operation, and Maintenance of a New Fire Station at Kirtland Air Force Base, New Mexico

DTIC Science & Technology

2012-05-01

species from construction and demolition activities would be less than significant. The burrowing owl (Athene cunicularia) is the only species of concern...listed by the U.S. Fish and Wildlife Service (USFWS) 5 in the vicinity. There are no known burrowing owl nests within the Building 30116 or... burrow damage) or indirectly impact (e.g., noise disturbances) burrowing owls under the Proposed Action. Surveys prior to construction and flagging

Flea abundance, diversity, and plague in Gunnison's prairie dogs (Cynomys gunnisoni) and their burrows in montane grasslands in northern New Mexico.

PubMed

Friggens, Megan M; Parmenter, Robert R; Boyden, Michael; Ford, Paulette L; Gage, Kenneth; Keim, Paul

2010-04-01

Plague, a flea-transmitted infectious disease caused by the bacterium Yersinia pestis, is a primary threat to the persistence of prairie dog populations (Cynomys spp.). We conducted a 3-yr survey (2004-2006) of fleas from Gunnison's prairie dogs (Cynomys gunnisoni) and their burrows in montane grasslands in Valles Caldera National Preserve in New Mexico. Our objectives were to describe flea communities and identify flea and rodent species important to the maintenance of plague. We live-trapped prairie dogs and conducted burrow sweeps at three colonies in spring and summer of each year. One hundred thirty prairie dogs and 51 golden-mantled ground squirrels (Spermophilus lateralis) were captured over 3,640 trap nights and 320 burrows were swabbed for fleas. Five flea species were identified from prairie dogs and ground squirrels and four were identified from burrow samples. Oropsylla hirsuta was the most abundant species found on prairie dogs and in burrows. Oropsylla idahoensis was most common on ground squirrels. Two colonies experienced plague epizootics in fall 2004. Plague-positive fleas were recovered from burrows (O. hirsuta and Oropsylla tuberculata tuberculata) and a prairie dog (O. hirsuta) in spring 2005 and summer 2006. Three prairie dogs collected in summer 2005 and 2006 had plague antibody. We found a significant surge in flea abundance and prevalence, particularly within burrows, following plague exposure. We noted an increased tendency for flea exchange opportunities in the spring before O. hirsuta reached its peak population. We hypothesize that the role of burrows as a site of flea exchange, particularly between prairie dogs and ground squirrels, may be as important as summer conditions that lead to buildup in O. hirsuta populations for determining plague outbreaks.

Inferring social structure and its drivers from refuge use in the desert tortoise, a relatively solitary species

USGS Publications Warehouse

Sah, Pratha; Nussear, Kenneth E.; Esque, Todd C.; Aiello, Christina M.; Hudson, Peter J.; Bansal, Shweta

2016-01-01

For several species, refuges (such as burrows, dens, roosts, nests) are an essential resource for protection from predators and extreme environmental conditions. Refuges also serve as focal sites for social interactions, including mating, courtship, and aggression. Knowledge of refuge use patterns can therefore provide information about social structure, mating, and foraging success, as well as the robustness and health of wildlife populations, especially for species considered to be relatively solitary. In this study, we construct networks of burrow use to infer social associations in a threatened wildlife species typically considered solitary—the desert tortoise. We show that tortoise social networks are significantly different than null networks of random associations, and have moderate spatial constraints. We next use statistical models to identify major mechanisms behind individual-level variation in tortoise burrow use, popularity of burrows in desert tortoise habitat, and test for stressor-driven changes in refuge use patterns. We show that seasonal variation has a strong impact on tortoise burrow switching behavior. On the other hand, burrow age and topographical condition influence the number of tortoises visiting a burrow in desert tortoise habitat. Of three major population stressors affecting this species (translocation, drought, disease), translocation alters tortoise burrow switching behavior, with translocated animals visiting fewer unique burrows than residents. In a species that is not social, our study highlights the importance of leveraging refuge use behavior to study the presence of and mechanisms behind non-random social structure and individual-level variation. Our analysis of the impact of stressors on refuge-based social structure further emphasizes the potential of this method to detect environmental or anthropogenic disturbances.

Importance of rodents for hydrology: lessons learnt from various field experiments

NASA Astrophysics Data System (ADS)

van Schaik, Loes; Zangerlé, Anne; Schneider, Anne-Kathrin; Schröder, Boris; Eccard, Jana

2017-04-01

organisms are known to create soil macropores of different sizes and with varying extent and orientation: most commonly earthworms, rodents, moles and roots. Preferential flow through macropore networks is dynamic and typically occurs when short individual macropores become connected at the hillslope scale as the nodes between the macropores become wet. Large lateral macropores may contribute to rapid subsurface stormflow of water and solutes at hillslope scale and supply a significant part of the catchment scale discharge during high intensity rainfall events even under relatively dry catchment state. Outflow from soil pipes, especially in the valley bottom or along the banking near to streams, is frequently observed, however, it remains a challenge to measure the spatial distribution, extent and connectivity of macropores at hill slope scales. We hypothesize that local information on organism abundances may be used as an indicator for spatial variability in infiltration, water storage and fluxes at the small scale and that knowledge on the landscape scale spatial distribution of organisms can provide information on connectivity of macropores at hillslope scale. Here we summarize the lessons learnt during three years of measurements aimed at determining the influence of rodent burrows on soil hydrology in a meso-scale catchment. Within the Attert Catchment (297 km2) in Luxembourg we performed sprinkling experiments with a brilliant blue tracer on twelve plots, of which six directly above rodent burrow openings and six on a surface without a rodent burrow opening, in order to examine the influence of the burrow openings on the infiltration pattern. Then we tested the extent of flow through mice burrows in different forest types, with varying geology and slope, by supplying 5 Liters of water with brilliant blue tracer directly to 24 burrow openings at soil surface. We excavated the burrows to measure how far the water was transported laterally in the burrow. Though we have serendipitous evidence of lateral water flow through large macropores in deeper soil layers from other projects, with the experiments we performed with the purpose to characterize this, the water did not seem to infiltrate into the burrow openings at the soil surface at all and the infiltration pattern under burrows was not different from that in soils without these openings. The five liter of brilliant blue dyed water which we poured into burrow openings did not flow far into the burrows, it generally infiltrated straight away into the surrounding soil. These results seem to show that the infiltration of water to rodent macropores during high intensity events does not take place at the soil surface but rather through other macropores, e.g. earthworm channels, which connect to deeper lateral channels. Also the lateral flow of water through the rodent burrows is apparently more effective in the deeper soils, where we occasionally saw a burrow with completely blue walls but little infiltration into the surrounding matrix.

Nelson's big horn sheep (Ovis canadensis nelsoni) trample Agassiz's desert tortoise (Gopherus agassizii) burrow at a California wind energy facility

USGS Publications Warehouse

Agha, Mickey; Delaney, David F.; Lovich, Jeffrey E.; Briggs, Jessica; Austin, Meaghan; Price, Steven J.

2015-01-01

Research on interactions between Agassiz's desert tortoises (Gopherus agassizii) and ungulates has focused exclusively on the effects of livestock grazing on tortoises and their habitat (Oldemeyer, 1994). For example, during a 1980 study in San Bernardino County, California, 164 desert tortoise burrows were assessed for vulnerability to trampling by domestic sheep (Ovis aries). Herds of grazing sheep damaged 10% and destroyed 4% of the burrows (Nicholson and Humphreys 1981). In addition, a juvenile desert tortoise was trapped and an adult male was blocked from entering a burrow due to trampling by domestic sheep. Another study found that domestic cattle (Bos taurus) trampled active desert tortoise burrows and vegetation surrounding burrows (Avery and Neibergs 1997). Trampling also has negative impacts on diversity of vegetation and intershrub soil crusts in the desert southwest (Webb and Stielstra 1979). Trampling of important food plants and overgrazing has the potential to create competition between desert tortoises and domestic livestock (Berry 1978; Coombs 1979; Webb and Stielstra 1979).

The effect of domain length and parameter estimation on observation impact in data assimilation for flood inundation forecasting.

NASA Astrophysics Data System (ADS)

Cooper, Elizabeth; Dance, Sarah; Garcia-Pintado, Javier; Nichols, Nancy; Smith, Polly

2017-04-01

Timely and accurate inundation forecasting provides vital information about the behaviour of fluvial flood water, enabling mitigating actions to be taken by residents and emergency services. Data assimilation is a powerful mathematical technique for combining forecasts from hydrodynamic models with observations to produce a more accurate forecast. We discuss the effect of both domain size and channel friction parameter estimation on observation impact in data assimilation for inundation forecasting. Numerical shallow water simulations are carried out in a simple, idealized river channel topography. Data assimilation is performed using an Ensemble Transform Kalman Filter (ETKF) and synthetic observations of water depth in identical twin experiments. We show that reinitialising the numerical inundation model with corrected water levels after an assimilation can cause an initialisation shock if a hydrostatic assumption is made, leading to significant degradation of the forecast for several hours immediately following an assimilation. We demonstrate an effective and novel method for dealing with this. We find that using data assimilation to combine observations of water depth with forecasts from a hydrodynamic model corrects the forecast very effectively at time of the observations. In agreement with other authors we find that the corrected forecast then moves quickly back to the open loop forecast which does not take the observations into account. Our investigations show that the time taken for the forecast to decay back to the open loop case depends on the length of the domain of interest when only water levels are corrected. This is because the assimilation corrects water depths in all parts of the domain, even when observations are only available in one area. Error growth in the forecast step then starts at the upstream part of the domain and propagates downstream. The impact of the observations is therefore longer-lived in a longer domain. We have found that the upstream-downstream pattern of error growth can be due to incorrect friction parameter specification, rather than errors in inflow as shown elsewhere. Our results show that joint state-parameter estimation can recover accurate values for the parameter controlling channel friction processes in the model, even when observations of water level are only available on part of the flood plain. Correcting water levels and the channel friction parameter together leads to a large improvement in the forecast water levels at all simulation times. The impact of the observations is therefore much greater when the channel friction parameter is corrected along with water levels. We find that domain length effects disappear for joint state-parameter estimation.

Large-Diameter Burrows of the Triassic Ischigualasto Basin, NW Argentina: Paleoecological and Paleoenvironmental Implications

PubMed Central

Colombi, Carina E.; Fernández, Eliana; Currie, Brian S.; Alcober, Oscar A.; Martínez, Ricardo; Correa, Gustavo

2012-01-01

Large-diameter ichnofossils comprising three morphotypes have been identified in the Upper Triassic Ischigualasto and Los Colorados formations of northwestern Argentina. These burrows add to the global record of the early appearance of fossorial behavior during early Mesozoic time. Morphotypes 1 and 2 are characterized by a network of tunnels and shafts that can be assigned to tetrapod burrows given similarities with previously described forms. However, differences in diameter, overall morphology, and stratigraphic occurrence allow their independent classification. Morphotype 3 forms a complex network of straight branches that intersect at oblique angles. Their calcareous composition and surface morphology indicate these structures have a composite biogenic origin likely developed due to combined plant/animal interactions. The association of Morphotypes 1 and 2 with fluvial overbank lithologies deposited under an extremely seasonal arid climate confirms interpretations that the early appearance of burrowing behavior was employed by vertebrates in response to both temperature and moisture-stress associated with seasonally or perpetually dry Pangean paleoclimates. Comparisons of burrow morphology and biomechanical attributes of the abundant paleovertebrate fauna preserved in both formations permit interpretations regarding the possible burrow architects for Morphotypes 1 and 2. In the case of the Morphotype 1, the burrow constructor could be one of the small carnivorous cynodonts, Ecteninion or Probelesodon. Assigning an architect for Morphotype 2 is more problematic due to mismatches between the observed burrow morphology and the size of the known Los Colorados vertebrates. PMID:23227195

Burrowing Owls, Pulex irritans, and Plague.

PubMed

Belthoff, James R; Bernhardt, Scott A; Ball, Christopher L; Gregg, Michael; Johnson, David H; Ketterling, Rachel; Price, Emily; Tinker, Juliette K

2015-09-01

Western Burrowing Owls (Athene cunicularia hypugaea) are small, ground-dwelling owls of western North America that frequent prairie dog (Cynomys spp.) towns and other grasslands. Because they rely on rodent prey and occupy burrows once or concurrently inhabited by fossorial mammals, the owls often harbor fleas. We examined the potential role of fleas found on burrowing owls in plague dynamics by evaluating prevalence of Yersinia pestis in fleas collected from burrowing owls and in owl blood. During 2012-2013, fleas and blood were collected from burrowing owls in portions of five states with endemic plague-Idaho, Oregon, Washington, Colorado, and South Dakota. Fleas were enumerated, taxonomically identified, pooled by nest, and assayed for Y. pestis using culturing and molecular (PCR) approaches. Owl blood underwent serological analysis for plague antibodies and nested PCR for detection of Y. pestis. Of more than 4750 fleas collected from owls, Pulex irritans, a known plague vector in portions of its range, comprised more than 99.4%. However, diagnostic tests for Y. pestis of flea pools (culturing and PCR) and owl blood (PCR and serology) were negative. Thus, even though fleas were prevalent on burrowing owls and the potential for a relationship with burrowing owls as a phoretic host of infected fleas exists, we found no evidence of Y. pestis in sampled fleas or in owls that harbored them. We suggest that studies similar to those reported here during plague epizootics will be especially useful for confirming these results.

Spatial transferability of habitat suitability models of Nephrops norvegicus among fished areas in the Northeast Atlantic: sufficiently stable for marine resource conservation?

PubMed

Lauria, Valentina; Power, Anne Marie; Lordan, Colm; Weetman, Adrian; Johnson, Mark P

2015-01-01

Knowledge of the spatial distribution and habitat associations of species in relation to the environment is essential for their management and conservation. Habitat suitability models are useful in quantifying species-environment relationships and predicting species distribution patterns. Little is known, however, about the stability and performance of habitat suitability models when projected into new areas (spatial transferability) and how this can inform resource management. The aims of this study were to model habitat suitability of Norway lobster (Nephrops norvegicus) in five fished areas of the Northeast Atlantic (Aran ground, Irish Sea, Celtic Sea, Scotland Inshore and Fladen ground), and to test for spatial transferability of habitat models among multiple regions. Nephrops burrow density was modelled using generalised additive models (GAMs) with predictors selected from four environmental variables (depth, slope, sediment and rugosity). Models were evaluated and tested for spatial transferability among areas. The optimum models (lowest AICc) for different areas always included depth and sediment as predictors. Burrow densities were generally greater at depth and in finer sediments, but relationships for individual areas were sometimes more complex. Aside from an inclusion of depth and sediment, the optimum models differed between fished areas. When it came to tests of spatial transferability, however, most of the models were able to predict Nephrops density in other areas. Furthermore, transferability was not dependent on use of the optimum models since competing models were also able to achieve a similar level of transferability to new areas. A degree of decoupling between model 'fitting' performance and spatial transferability supports the use of simpler models when extrapolating habitat suitability maps to different areas. Differences in the form and performance of models from different areas may supply further information on the processes shaping species' distributions. Spatial transferability of habitat models can be used to support fishery management when the information is scarce but caution needs to be applied when making inference and a multi-area transferability analysis is preferable to bilateral comparisons between areas.

ENHANCED ORGANIC MATTER REMINERALIZATION AND NUTRIENT TURNOVER BY BURROWING SHRIMP POPULATIONS IN YAQUINA BAY, OR

EPA Science Inventory

Burrowing thalassinid shrimp are major ecological components of Pacific Northwest (PNW) estuaries and where they structure large areas of intertidal and shallow subtidal habitat. These crustaceans occur in dense beds (>250 m-2) and dig extensive burrow systems (>1 m) controlling ...

Burrowing Owl (Speotyto cunicularia) monitoring and management activities in Manitoba, 1987-1996

Treesearch

Ken D. De Smet

1997-01-01

Monitoring of Burrowing Owl (Speotyto cunicularia) populations in Manitoba from 1987-1996 revealed a continuous population decline from 34 known nesting pairs to only one. Management activities are discussed including public awareness programs, reintroductions, habitat protection and provision of artificial nest burrows. Nest reuse in consecutive...

COMPARISON OF CARBON AND NITROGEN FLUXES IN TIDEFLAT FOOD WEBS DOMINATED BY BURROWING SHRIMP OR BY CULTURED OYSTERS

EPA Science Inventory

Two species of indigenous, thalassinid burrowing shrimps are pests to the benthic culture of Pacific oysters (Crassostrea gigas) because deposition of sediment excavated by the shrimps buries or smothers the oysters. Carbaryl pesticide is used to reduce burrowing shrimp densitie...

Burrowing owl foods in Conata Basin, South Dakota

Treesearch

James C. MacCracken; Daniel W. Uresk; Richard M. Hansen

1985-01-01

Burrowing Owls (Athene cunicularia) were studied in a prairie dog town of southwestern South Dakota. Pellets regurgitated by Burrowing Owls contained a wide variety of prey remains. Insects, spiders, small mammals, and vegetation were the most frequent items identified in the pellets. Mammals were consumed most frequently during spring and early...

Observations on burrowing rates and comments on host specificity in the endangered mussel Lampsilis higginsi

USGS Publications Warehouse

Sylvester, J.R.; Holland, L.E.; Kamer, T.K.

1984-01-01

In preliminary laboratory studies, the endangered mussel Lampsilis higginsi was unable to burrow into rocky substrates, but did burrow into substrates comprised of silt, clay, sand, and/or pebble-gravel. Burrowing times were shortest in silt and longest in pebble-gravel. As judged by longevity of glochidial infection, walleye (Stizostedion vitreum) and largemouth bass (Micropterus salmoides) may be suitable hosts for the parasitic stage. When glochidia were placed in water without host fish, half had died after 48 hours, and all had died after 72 hours. (DBO).

Development and evaluation of a boat-mounted RFID antenna for monitoring freshwater mussels

USGS Publications Warehouse

Fischer, Jesse R.; Neebling, Travis E.; Quist, Michael C.

2012-01-01

Development of radio frequency identification (RFID) technology and passive integrated transponder (PIT) tags has substantially increased the ability of researchers and managers to monitor populations of aquatic organisms. However, use of transportable RFID antenna systems (i.e., backpack-mounted) is currently limited to wadeable aquatic environments (<1.4 m water depth). We describe the design, construction, and evaluation of a boat-mounted RFID antenna to detect individually PIT-tagged benthic aquatic organisms (mussels). We evaluated the effects of tag orientation on detection distances in water with a 32-mm half-duplex PIT tag. Detection distances up to 50 cm from the antenna coils were obtained, but detection distance was dependent on tag orientation. We also evaluated detection distance of PIT tags beneath the sediment to simulate detection of burrowing mussels with 23- and 32-mm tags. In sand substrate, the maximum detection distance varied from 3.5 cm and 4.5 cm (vertical tag orientation) to 24.7 cm and 39.4 cm (45° tag orientation) for the 23- and 32-mm PIT tags, respectively. Our results suggest a 1.4-m total detection width for tagged mussels on the substrate surface by the boat-mounted antenna system regardless of tag orientation. However, burrowed mussels may require multiple passes to increase detection that would be influenced by depth, tag orientation, and tag size. Construction of the boat-mounted antenna was relatively low in cost (<500 USD) and had several advantages (less labor and time intensive, increased safety) over traditional mussel sampling techniques (diving, snorkeling) in nonwadeable habitats.

Development of survival skills in captive-raised Siberian polecats (Mustela eversmanni) I: locating prey

USGS Publications Warehouse

Miller, Brian; Biggins, Dean; Wemmer, Chris; Powell, Roger; Hanebury, Lou; Horn, Deborah; Vargas, Astrid

1990-01-01

Captive-raised mustelids appear to have a rudimentary capacity to kill prey, but the skills necessary for locating prey may be eroded during captivity. We tested the maturational component of prey-searching behavior with captive-raised Siberian polecats (Mustela eversmanni) by subjecting polecats to a simulated prairie dog colony of 6 burrows within a 200 m2 arena. Ten naive Siberian polecats at ages 2.5, 3.5, and 4.5 months (30 total) were deprived of food for 12 hours. A dead prairie dog was placed in 1 prairie dog burrow and the other 5 were empty. A single Siberian polecat was released onto the colony shortly before sunset and its movements monitored from an observation tower. Older Siberian polecats located prey significantly quicker than younger polecats, but all age groups spent a great deal of time in surface activity not directed toward a burrow. When Siberian polecats were about 10 months old, all burrows in the arena were plugged with dirt including the burrow with the prairie dog. In this winter test, Siberian polecats located the prey but still spent a great deal of time in non-burrow directed surface activity. Economical use of surface time, with a low amount of non-burrow directed behavior, would presumably reduce the risk of predation for hunting polecats.

Interactions between fauna and environment in recent alluvial soils (Dunajec River, SE Poland)

NASA Astrophysics Data System (ADS)

Mikuś, Paweł; Uchman, Alfred

2017-04-01

Recent riverine system is a particular place for interactions between fauna and the deposited sediments containing young and old alluvial soils. It is characterized by large energy gradients in relatively short time, which forces special adaptations of burrowing animals recorded in bioturbation structures. Predators produce mainly shelter burrows (interpreted as domichnia), and saprofags, especially earthworms, produce locomotion and feeding structures (pascichnia). Such structures have been studied in non- or poorly vegetated, sandy or muddy Holocene alluvia in the lower reach of the Dunajec River flowing through the Carpathian Foredeep in SE Poland. The observed burrows are mostly produced by a variety of organisms, including the European mole (Talpa europaea), common earthworm (Lumbricus terrestris), ground beetles (Carabidae), solitary bees (Ammophila), red fox (Vulpes vulpes), European beaver (Castor fiber), shrews (Soricidae), European otter (Lutra lutra), several species of mice (Muridae), voles (Myodae, Microtae), and the swallow sand martin (Riparia riparia). Burrows of a few species of ground beetles have been subjected to more detailed studies. Fertile deposits of older (early to middle Holocene) terraces, formed with many long-term interruptions in sedimentation processes, have a well-developed soil levels, more vulnerable to burrowing than recently deposited sediments. The terraces contain layers of sands and muds, which primary sedimentary structures and layer boundaries are completely or partly disturbed by bioturbation. Organic-rich muds have been moved up and down and mixed with sand. Moreover, sediments have been leached into open burrows during floods or rainfalls. In the natural levee sediments, mostly fine to medium sands, are horizontally burrowed, foremost by earthworms (Lumbricidae). Vertical, long (over 2 m deep) burrows of larger earthworms cross cut the natural levee sediments and enter buried soils. They were formed during a long period between flooding events reaching into the soil profile. Not rarely, the vertical burrows follow living or dead roots. As the European mole feed on earthworms, their burrows commonly co-occur. Diversity and abundance of burrowing animals in the riverine environment are mainly controlled by water-level fluctuations, foremost these which cause floods or droughts. The highest biodiversity of infauna occurs under moderate level of river disturbances. With low level of disturbances, larger, long-living species dominate, whereas with high-level disturbances small, short-living forms prevail.

Burrowing inhibition by fine textured beach fill: Implications for recovery of beach ecosystems

NASA Astrophysics Data System (ADS)

Viola, Sloane M.; Hubbard, David M.; Dugan, Jenifer E.; Schooler, Nicholas K.

2014-10-01

Beach nourishment is often considered the most environmentally sound method of maintaining eroding shorelines. However, the ecological consequences are poorly understood. Fill activities cause intense disturbance and high mortality and have the potential to alter the diversity, abundance, and distribution of intertidal macroinvertebrates for months to years. Ecological recovery following fill activities depends on successful recolonization and recruitment of the entire sandy intertidal community. The use of incompatible sediments as fill material can strongly affect ecosystem recovery. We hypothesized that burrowing inhibition of intertidal animals by incompatible fine fill sediments contributes to ecological impacts and limits recovery in beach ecosystems. We experimentally investigated the influence of intertidal zone and burrowing mode on responses of beach invertebrates to altered sediment texture (28-38% fines), and ultimately the potential for colonization and recovery of beaches disturbed by beach filling. Using experimental trials in fill material and natural beach sand, we found that the mismatched fine fill sediments significantly inhibited burrowing of characteristic species from all intertidal zones, including sand crabs, clams, polychaetes, isopods, and talitrid amphipods. Burrowing performance of all five species we tested was consistently reduced in the fill material and burrowing was completely inhibited for several species. The threshold for burrowing inhibition by fine sediment content in middle and lower beach macroinvertebrates varied by species, with highest sensitivity for the polychaete (4% fines, below the USA regulatory limit of 10% fines), followed by sand crabs and clams (20% fines). These results suggest broader investigation of thresholds for burrowing inhibition in fine fill material is needed for beach animals. Burrowing inhibition caused by mismatched fill sediments exposes beach macroinvertebrates to stresses, which could depress recruitment and survival at all intertidal zones. Our results suggest use of incompatible fine fill sediments from dredging projects creates unsuitable intertidal habitat that excludes burrowing macroinvertebrates and could delay beach ecosystem recovery. Through effects on beach invertebrates that are prey for shorebirds and fish, the ecological impacts of filling with mismatched fine sediments could influence higher trophic levels and extend beyond the beach itself.

Use of mammal manure by nesting burrowing owls: a test of four functional hypotheses

USGS Publications Warehouse

Smith, M.D.; Conway, C.J.

2007-01-01

Animals have evolved an impressive array of behavioural traits to avoid depredation. Olfactory camouflage of conspicuous odours is a strategy to avoid depredation that has been implicated only in a few species of birds. Burrowing owls, Athene cunicularia, routinely collect dried manure from mammals and scatter it in their nest chamber, in the tunnel leading to their nest and at the entrance to their nesting burrow. This unusual behaviour was thought to reduce nest depredation by concealing the scent of adults and juveniles, but a recent study suggests that manure functions to attract arthropod prey. However, burrowing owls routinely scatter other materials in the same way that they scatter manure, and this fact seems to be at odds with both of these hypotheses. Thus, we examined the function of this behaviour by testing four alternative hypotheses. We found no support for the widely cited olfactory-camouflage hypothesis (manure did not lower the probability of depredation), or for the mate-attraction hypothesis (males collected manure after, not before, pair formation). Predictions of the burrow-occupied hypothesis (manure indicates occupancy to conspecifics and thereby reduces agonistic interactions) were supported, but results were not statistically significant. Our results also supported several predictions of the prey-attraction hypothesis. Pitfall traps at sampling sites with manure collected more arthropod biomass (of taxa common in the diet of burrowing owls) than pitfall traps at sampling sites without manure. Scattering behaviour of burrowing owls appears to function to attract arthropod prey, but may also signal occupancy of a burrow to conspecifics. ?? 2006 The Association for the Study of Animal Behaviour.

Strategies for protecting Western Burrowing Owls (Speotyto cunicularia hypugaea) from human activities

Treesearch

Lynne A. Trulio

1997-01-01

Practitioners have been using numerous methods to protect Burrowing Owls (Speotyto cunicularia hypugaea) affected by human activities. Primary approaches include protecting birds and burrows in place, allowing birds to relocate within their nesting territory, allowing birds to colonize new patches, moving birds within the geographic region and moving...

Habitat fragmentation and the Burrowing Owls (Speotyto cunicularia) in Saskatchewan

Treesearch

Robert G. Warnock; Paul C. James

1997-01-01

The relationship between landscape (125,664 ha circular plots) fragmentation patterns and the spatial distribution of Burrowing Owls (Speotyto cunicularia) was investigated in the heavily fragmented grasslands of Saskatchewan. Data were collected from 152 Burrowing Owl sites and 250 random sites located on 1990 LANDSAT-TM satellite images and 1:250,...

Footprints in the sand: independent reduction of subdigital lamellae in the Namib-Kalahari burrowing geckos.

PubMed

Lamb, Trip; Bauer, Aaron M

2006-04-07

Many desert organisms exhibit convergence, and certain physical factors such as windblown sands have generated remarkably similar ecomorphs across divergent lineages. The burrowing geckos Colopus, Chondrodactylus and Palmatogecko occupy dune ecosystems in the Namib and Kalahari deserts of southwest Africa. Considered closely related, they share several putative synapomorphies, including reduced subdigital pads (toe pads) and spinose digital scales. Though recognized as part of Africa's ecologically diverse Pachydactylus Group, the burrowing geckos' precise phylogenetic affinities remain elusive. Convergent pedal modification provides a tenable alternative explaining the geckos' derived terrestriality and adaptation to Namib and Kalahari sands. We generated a molecular phylogeny for the Pachydactylus Group to examine evolutionary relationships among the burrowing geckos and infer historical patterns of pedal character change. Bayesian and parsimony analyses revealed all three burrowing genera to be deeply nested within Pachydactylus, each genus belonging to a separate clade. Strong support for these distinct clades indicates ecomorphological adaptations for burrowing have evolved independently three times in the southern Pachydactylus Group. We argue that the physical properties of Namib and Kalahari sands played a principal role in selecting for pedal similarity.

Winter ecology of the western burrowing owl (Athene cunicularia hypugaea) in southern Texas 1999-2004

USGS Publications Warehouse

Woodin, Marc C.; Skoruppa, Mary K.; Hickman, Graham C.

2007-01-01

This study examines the winter ecology of the western burrowing owl (Athene cunicularia hypugaea) in five Texas counties surrounding Corpus Christi, in southern Texas. There is a substantial gap in information on the owl's life cycle during migration and non-breeding winter months; almost all previous research on western burrowing owls has been conducted during the breeding season. The western burrowing owl currently is federally threatened in Mexico, federally endangered in Canada, and in the United States is considered a National Bird of Conservation Concern by the U.S. Fish and Wildlife Service. Topics investigated included status, effectiveness of public outreach, roost sites and use of culverts and artificial burrows, roost site fidelity, diet, contaminant burdens, body mass, and ectoparasites. Early ornithological reports and a museum egg set revealed that burrowing owls once bred in southern Texas and were common in winter; however, since the 1950's they have been reported in relatively low numbers and only during winter. In this study, public outreach increased western burrowing owl detections by 68 percent. Owls selected winter roost sites with small-diameter openings, including culverts less than or equal to 16 centimeters and artificial burrows of 15 centimeters, probably because the small diameters deterred mammalian predators. Owls showed strong roost site fidelity; 15 banded birds stayed at the same roost sites within a winter, and 8 returned to the same site the following winter. The winter diet was over 90 percent insects, with crickets the primary prey. Analyses of invertebrate prey and regurgitated pellets showed that residues of all but 3 of 28 carbamate and organophosphate pesticides were detected at least once, but all were below known lethal concentrations. Mean body mass of western burrowing owls was 168 grams and was highest in midwinter. Feather lice were detected in low numbers on a few owls, but no fleas or other ectoparasites were found.

The Perfect Burrow, but for What? Identifying Local Habitat Conditions Promoting the Presence of the Host and Vector Species in the Kazakh Plague System

PubMed Central

Wilschut, Liesbeth; Addink, Elisabeth; Ageyev, Vladimir; Yeszhanov, Aidyn; Sapozhnikov, Valerij; Belayev, Alexander; Davydova, Tania; Eagle, Sally; Begon, Mike

2015-01-01

Introduction The wildlife plague system in the Pre-Balkhash desert of Kazakhstan has been a subject of study for many years. Much progress has been made in generating a method of predicting outbreaks of the disease (infection by the gram negative bacterium Yersinia pestis) but existing methods are not yet accurate enough to inform public health planning. The present study aimed to identify characteristics of individual mammalian host (Rhombomys opimus) burrows related to and potentially predictive of the presence of R.opimus and the dominant flea vectors (Xenopsylla spp.). Methods Over four seasons, burrow characteristics, their current occupancy status, and flea and tick burden of the occupants were recorded in the field. A second data set was generated of long term occupancy trends by recording the occupancy status of specific burrows over multiple occasions. Generalised linear mixed models were constructed to identify potential burrow properties predictive of either occupancy or flea burden. Results At the burrow level, it was identified that a burrow being occupied by Rhombomys, and remaining occupied, were both related to the characteristics of the sediment in which the burrow was constructed. The flea burden of Rhombomys in a burrow was found to be related to the tick burden. Further larger scale properties were also identified as being related to both Rhombomys and flea presence, including latitudinal position and the season. Conclusions Therefore, in advancing our current predictions of plague in Kazakhstan, we must consider the landscape at this local level to increase our accuracy in predicting the dynamics of gerbil and flea populations. Furthermore this demonstrates that in other zoonotic systems, it may be useful to consider the distribution and location of suitable habitat for both host and vector species at this fine scale to accurately predict future epizootics. PMID:26325073

Burrowing activity in channel levees: impact of the invasive red swamp crayfish Procambarus clarkii

NASA Astrophysics Data System (ADS)

Solari, L.; Bendoni, M.; Consumi, L.; Haubrock, P.; Inghilesi, A.; Mazza, G.; Torrini, M.; Tricarico, E.

2016-12-01

The effect of animal burrowing, as an example of bioturbation on the stability of river levees has been recently raised to the scientific community as a consequence of the levee collapses of Secchia and Foenna rivers in Italy (Camici et al., 2010, 2014; Orlandini et al., 2015). Indeed, these authors showed that the presence of animal burrows is crucial in promoting the collapse of the bank. The American red swamp Crayfish Procambarus clarkii is an invasive species in Europe, mostly introduced for commercial purposes related to livestock. It is rapidly spreading throughout the Italian peninsula due to its plasticity, dispersal capability and high reproduction rate (Souty-Grosset et al., 2016). As well as the negative effects on local biodiversity, it damages the levees of the irrigation channel leading to disastrous collapses, relevant repairing and maintenance costs. In this work, we present an experimental activity where specimens of P. clarkii were monitored while burrowing into a small-scale physical model of an earthen levee, coupled with the mathematical modelling of the variations induced by the burrows on the seepage flow patterns through the levee.Preliminary results show the burrowing structure was quite irregular. Generally, crayfish start burrowing under the water level, developing tunnels (diameter ranging 4-7cm) both horizontally and heading upward, also above the water level. Some tunnels showed one or more circular chambers. The highest burrowing activity was observed during the experiments carried out in summer, when the species has a peak of maximum activity due to the higher temperature. Mathematical modelling shows that, for given boundary conditions and experimental duration, the presence of burrows in the levee raises the phreatic line. Critical conditions for levee integrity may be associated either to the internal erosion and stability of the system of tunnels and to the emergence of the phreatic line of the landside of the levee slope. These aspects are currently under investigation.

Burrowing by small polychaetes - mechanics, behavior and muscle structure of Capitella sp.

PubMed

Grill, Susann; Dorgan, Kelly M

2015-05-15

Worms of different sizes extend burrows through muddy sediments by fracture, applying dorso-ventral forces that are amplified at the crack tip. Smaller worms displace sediments less than larger worms and therefore are limited in how much force they can apply to burrow walls. We hypothesized that small worms would exhibit a transition in burrowing mechanics, specifically a lower limit in body size for the ability to burrow by fracture, corresponding with an ontogenetic transition in muscle morphology. Kinematics of burrowing in a mud analog, external morphology and muscle arrangement were examined in juveniles and adults of the small polychaete Capitella sp. We found that it moves by peristalsis, and no obvious differences were observed among worms of different sizes; even very small juveniles were able to burrow through a clear mud analog by fracture. Interestingly, we found that in addition to longitudinal and circular muscles needed for peristaltic movements, left- and right-handed helical muscles wrap around the thorax of worms of all sizes. We suggest that in small worms helical muscles may function to supplement forces generated by longitudinal muscles and to maintain hydrostatic pressure, enabling higher forces to be exerted on the crack wall. Further research is needed, however, to determine whether surficial sediments inhabited by small worms fail by fracture or plastically deform under forces of the magnitudes applied by Capitella sp. © 2015. Published by The Company of Biologists Ltd.

Measuring the contribution of benthic ecosystem engineering species to the ecosystem services of an estuary: A case study of burrowing shrimps in Yaquina Estuary, Oregon

EPA Science Inventory

Burrowing shrimps are regarded as ecosystem engineering species in many coastal ecosystems worldwide, including numerous estuaries of the west coast of North America (Baja California to British Columbia). In estuaries of the U.S. Pacific Northwest, two species of large burrowing...

Distribution of the endangered giant kangaroo rat, Dipodomys ingens, on the Naval Petroleum Reserves, Kern County, California

DOE Office of Scientific and Technical Information (OSTI.GOV)

O'Farrell, T.P.; Mathews, N.E.; Kato, T.T.

1987-07-01

Field surveys were conducted to determine the distribution and relative abundance of burrow systems of the endangered giant kangaroo rat, Dipodomys ingens, on the US Department of Energy's Naval Petroleum Reserves (NPR-1, NPR-2) in Kern County, California. A total of 1080 burrow systems were observed on 30 sections of NPR-1, 22 sections of NPR-2, and six adjoining sections. Most burrow systems were found in clusters on deep sandy loams in Buena Vista Valley, but isolated burrows were found in similar soils on the upper slopes or crests of ridges in 30 other sections of the reserves. Burrow systems had anmore » average of 3.3 horizontal entrances measuring 2.7 in. high and 3.4 in. wide, and an average of 1.4 vertical entrances 2.0 in. in diameter. In the valleys burrows occurred in a density of 28.2 per acre; had an average slope angle of 4.3/sup 0/; were within 3.3 yd of a perennial shrub, usually a cheese-bush, Hymenoclea salsola; had a predominantly southern aspect; and were grazed by sheep, but were remote from petroleum production activities. In the uplands burrows occurred in a density of 0.1 per acre; had an average slope angle of 6.4/sup 0/; were within 5.1 yd of a perennial shrub, usually a desert saltbush, Atriplex polycarpa; had no particular aspect; and were not grazed by sheep, but were close to petroleum production activities. Since 1980, preconstruction surveys have helped conserve giant kangaroo rat burrows that may have been inadvertently threatened by construction projects on the reserves.« less

Postbreeding resource selection by adult black-footed ferrets in the Conata Basin, South Dakota

USGS Publications Warehouse

Eads, D.A.; Millspaugh, J.J.; Biggins, D.E.; Livieri, T.M.; Jachowski, D.S.

2011-01-01

We investigated postbreeding resource selection by adult black-footed ferrets (Mustela nigripes) on a 452-ha black-tailed prairie dog (Cynomys ludovicianus) colony in the Conata Basin of South Dakota during 20072008. We used resource selection functions (RSFs) to evaluate relationships between numbers of ferret locations and numbers of prairie dog burrow openings (total or active), distances to colony edges, and connectivity of patches of burrow openings. In both years ferrets selected areas near edges of the prairie dog colony where active burrow openings were abundant. In the interior of the colony ferrets selected areas with low abundance of active burrow openings. At times, prairie dog productivity (i.e., pup abundance) might be greatest at colony edges often characterized by grasses; ferrets are likely to select areas where refuge and vulnerable prey are abundant. Ferrets could have used interior areas with few active burrow openings as corridors between edge areas with many active burrow openings. Also, in areas with few active burrow openings ferrets spend more time aboveground during movements and, thus, are likely to be more easily detected. These results complement previous studies demonstrating importance of refuge and prey in fine-scale resource selection by ferrets and provide insight into factors that might influence edge effects on ferret space use. Conservation and restoration of colonies with areas with high densities of burrow openings and prairie dogs, and corridors between such areas, are needed for continued recovery of the black-footed ferret. RSFs could complement coarse-scale habitat evaluations by providing finer-scale assessments of habitat for the black-footed ferret. ?? 2011 American Society of Mammalogists.

The burrowing activity of scorpions ( Scorpio maurus palmatus) and their potential contribution to the erosion of Hamra soils in Karkur, central Israel

NASA Astrophysics Data System (ADS)

Rutin, J.

1996-03-01

The burrowing activity of the scorpion Scorpio maurus palmatus was studied on a 1200 m 2 slope of a so-called "Hamra" sandy soil in Karkur, Israel. The main results were (1) The scorpions excavate soil material after rain storms, preparing this material for erosion processes by rain splash and rainwash. (2) The burrowing activity stops in the dry summer and during cold days of the winter. This means that Scorpio Maurus Palmatus is preparing soil for erosion from one storm to the next, and not from one season to the next as was previously thought. Further, it was found that the amount of soil material excavated from the burrow is proportional to the size of the scorpion and that most of the mounds were deposited toward the upper part of the slope which means that part is washed back into the burrow itself.

Rodents new to the diet of the western burrowing owl(athene CUNICULARIA HYPUGAEA )

USGS Publications Warehouse

Wiluford, D.L.; Woodin, M.C.; Skoruppa, M.K.; Hickman, G.C.

2009-01-01

The northern pygmy mouse (Baiomys taylori), fulvous harvest mouse (Reithrodontomys fulvescens), and Merriam's pocket mouse (Pemgnathus merriami) are new to the diet of the western burrowing owl (Athene cuniculana hypugaed). All three species were identified from remains in regurgitated pellets collected from roost sites of burrowing owls in southern Texas over a period of 4 winters. Together, northern pygmy mice and fulvous harvest mice represented 58% of mammals identified in 182 pellets regurgitated by western burrowing owls. Merriam's pocket mouse accounted for only 4% of identified mammalian prey. Frequency of occurrence in pellets was 16% for northern pygmv mice, 11% for fulvous harvest mice, and 3% for Merriam's pocket mice. The primary reason for absence of these species in previous studies of foods of western burrowing owls is that most were conducted in latitudes north of these southern-distributed species of mammals.

Rapid breakthrough of pesticides via biopres into tile drains and shallow groundwater: a combined experimental and model study

NASA Astrophysics Data System (ADS)

Klaus, J.; Zehe, E.; Palm, J.; Schroeder, B.

2009-04-01

Preferential flow in macropores is a key process which strongly affects infiltration and may cause rapid transport of pesticides into depths of 80 to 150 cm. At these depths they experience a much slower degradation, may leach into shallow groundwater or enter a tile-drain and are transported in surface water bodies. Therefore, preferential transport is an environ¬mental problem because the topsoil is bypassed, which has been originally thought to act as a filter to protect the subsoil and shallow groundwater. To get a better insight in the process of pesticide transport in agricultural soils an irrigation experiment was performed on a 400 m² field site. The experimental plot is located in the Weiherbach valley, south-west Germany, which basic geology consists of Loess and Keuper layers, the soil at the test site is a gleyic Colluvisol. The distance of the irrigation site to the Weiherbach brook is aprox. 12 m, the field is drained with a tile-drain in about 1.2 m depth and the shows runoff over the entire year. Three hours before the irrigation started the farmer applied a pesticide solution consisting of Isoproturon and Flufenacet according to conventional agricultural practice. The irrigation took place in three time blocks (80 min, 60 min, 80 min) and had a total irrigation rate of 33.6 mm measured with ten precipitation samplers. During the first block a tracer solution of 1600 g Bromide and 2000 g Brilliant Blue was irrigated on the test site. The drainage outlet was instrumented with a pressure probe to measure the water level. About 50 water samples were taken on the day of the experiment from the drainage outlet by hand, and in an eight hour interval for six days with an automatic sample procedure. Discharge at the drainage outlet showed two peaks in response irrigation. The breakthrough of the tracer into the brook is much faster then the reaction of the discharge on the precipitation impulse. To gain insight in the vertical transport behaviour three vertical soil profiles were excavated on the first day after the irrigation and two vertical profiles were excavated one week after the experiment. In those profiles soil samples were taken in a 10cm*10cm grid to analyse for the tracer concentrations. Based on that information the probability distribution function of the travel depths for each tracer could be calculated for two points in time. As burrows of deep digging earth worms often act as preferential pathways we counted the individuals of worm burrows using a nested sampling procedure. Though endogeic earthworms were apparent we didn't find any individuals of Lumbricus Terrestris nor macropores with diameter larger than 2 mm at a depth larger than 30-35 cm. So far we didn't identify those pathways that caused this rapid pesticide breakthrough into the tile drain, though a very small number macropores would suffice. Based on the collected data we will setup up a numerical model to simulate observed and flow and transport and test the hypothesis that earthworm burrows are the reason for this rapid breakthrough of pesticides into the tile drain.

Current status, distribution, and conservation of the Burrowing Owl (Speotyto cunicularia) in midwestern and western North America

Treesearch

Steven R. Sheffield

1997-01-01

The Burrowing Owl (Speotyto cunicularia) inhabits open prairie grassland habitat in the midwestern and western US and Canada. For several years now, numbers of this species in North America have been declining at an alarming rate. Currently, Burrowing Owls are listed as endangered in Canada and threatened in Mexico. In the United States, the...

Measuring the contribution of benthic ecosystem engineering species to the ecosystem services of an estuary: A case study of burrowing shrimps in Yaquina Estuary, Oregon - April 2009

EPA Science Inventory

Burrowing shrimps are regarded as ecosystem engineering species in many coastal ecosystems worldwide, including numerous estuaries of the west coast of North America (Baja California to British Columbia). In estuaries of the U.S. Pacific Northwest, two species of large burrowing...

Impacts of Off-Road Vehicles (ORVs) on Burrow Architecture of Ghost Crabs (Genus Ocypode) on Sandy Beaches

NASA Astrophysics Data System (ADS)

Lucrezi, Serena; Schlacher, Thomas A.

2010-06-01

Recreational beach use with off-road vehicles is popular, but potentially harmful from an environmental perspective. Beaches are important habitats to invertebrates such as ghost crabs of the genus Ocyopde, which excavate extensive and elaborate burrows. Ghost crabs are sensitive to human pressures and changes in burrow architecture may thus be a consequence of disturbance by vehicles—the predictive hypothesis of this article. This was tested during the austral spring and summer by comparing 305 burrow casts between beaches open and closed to vehicles in Eastern Australia. Traffic influenced burrow architecture: there were smaller crabs on vehicle-impacted beaches, and after the peak traffic period (Christmas and New Year holidays), these crabs had tunnelled deeper into the sediment on shores rutted by cars. Crabs constructed all types of previously described burrows, but, significantly, smaller crabs from vehicle-impacted beaches simplified their shapes following heavy traffic disturbance from four (I, J, Y, M) to only two types (I, Y). These data support a model of active behavioural responses to disturbance from vehicles, extending the known effects of beach traffic to impacts on behavioural traits of the beach fauna.

Footprints in the sand: independent reduction of subdigital lamellae in the Namib–Kalahari burrowing geckos

PubMed Central

Lamb, Trip; Bauer, Aaron M

2005-01-01

Many desert organisms exhibit convergence, and certain physical factors such as windblown sands have generated remarkably similar ecomorphs across divergent lineages. The burrowing geckos Colopus, Chondrodactylus and Palmatogecko occupy dune ecosystems in the Namib and Kalahari deserts of southwest Africa. Considered closely related, they share several putative synapomorphies, including reduced subdigital pads (toe pads) and spinose digital scales. Though recognized as part of Africa's ecologically diverse Pachydactylus Group, the burrowing geckos' precise phylogenetic affinities remain elusive. Convergent pedal modification provides a tenable alternative explaining the geckos' derived terrestriality and adaptation to Namib and Kalahari sands. We generated a molecular phylogeny for the Pachydactylus Group to examine evolutionary relationships among the burrowing geckos and infer historical patterns of pedal character change. Bayesian and parsimony analyses revealed all three burrowing genera to be deeply nested within Pachydactylus, each genus belonging to a separate clade. Strong support for these distinct clades indicates ecomorphological adaptations for burrowing have evolved independently three times in the southern Pachydactylus Group. We argue that the physical properties of Namib and Kalahari sands played a principal role in selecting for pedal similarity. PMID:16618680

Potential corridors and barriers for plague spread in Central Asia.

PubMed

Wilschut, Liesbeth I; Addink, Elisabeth A; Heesterbeek, Hans; Heier, Lise; Laudisoit, Anne; Begon, Mike; Davis, Stephen; Dubyanskiy, Vladimir M; Burdelov, Leonid A; de Jong, Steven M

2013-10-31

Plague (Yersinia pestis infection) is a vector-borne disease which caused millions of human deaths in the Middle Ages. The hosts of plague are mostly rodents, and the disease is spread by the fleas that feed on them. Currently, the disease still circulates amongst sylvatic rodent populations all over the world, including great gerbil (Rhombomys opimus) populations in Central Asia. Great gerbils are social desert rodents that live in family groups in burrows, which are visible on satellite images. In great gerbil populations an abundance threshold exists, above which plague can spread causing epizootics. The spatial distribution of the host species is thought to influence the plague dynamics, such as the direction of plague spread, however no detailed analysis exists on the possible functional or structural corridors and barriers that are present in this population and landscape. This study aims to fill that gap. Three 20 by 20 km areas with known great gerbil burrow distributions were used to analyse the spatial distribution of the burrows. Object-based image analysis was used to map the landscape at several scales, and was linked to the burrow maps. A novel object-based method was developed - the mean neighbour absolute burrow density difference (MNABDD) - to identify the optimal scale and evaluate the efficacy of using landscape objects as opposed to square cells. Multiple regression using raster maps was used to identify the landscape-ecological variables that explain burrow density best. Functional corridors and barriers were mapped using burrow density thresholds. Cumulative resistance of the burrow distribution to potential disease spread was evaluated using cost distance analysis. A 46-year plague surveillance dataset was used to evaluate whether plague spread was radially symmetric. The burrow distribution was found to be non-random and negatively correlated with Greenness, especially in the floodplain areas. Corridors and barriers showed a mostly NWSE alignment, suggesting easier spreading along this axis. This was confirmed by the analysis of the plague data. Plague spread had a predominantly NWSE direction, which is likely due to the NWSE alignment of corridors and barriers in the burrow distribution and the landscape. This finding may improve predictions of plague in the future and emphasizes the importance of including landscape analysis in wildlife disease studies.

Potential corridors and barriers for plague spread in central Asia

PubMed Central

2013-01-01

Background Plague (Yersinia pestis infection) is a vector-borne disease which caused millions of human deaths in the Middle Ages. The hosts of plague are mostly rodents, and the disease is spread by the fleas that feed on them. Currently, the disease still circulates amongst sylvatic rodent populations all over the world, including great gerbil (Rhombomys opimus) populations in Central Asia. Great gerbils are social desert rodents that live in family groups in burrows, which are visible on satellite images. In great gerbil populations an abundance threshold exists, above which plague can spread causing epizootics. The spatial distribution of the host species is thought to influence the plague dynamics, such as the direction of plague spread, however no detailed analysis exists on the possible functional or structural corridors and barriers that are present in this population and landscape. This study aims to fill that gap. Methods Three 20 by 20 km areas with known great gerbil burrow distributions were used to analyse the spatial distribution of the burrows. Object-based image analysis was used to map the landscape at several scales, and was linked to the burrow maps. A novel object-based method was developed – the mean neighbour absolute burrow density difference (MNABDD) – to identify the optimal scale and evaluate the efficacy of using landscape objects as opposed to square cells. Multiple regression using raster maps was used to identify the landscape-ecological variables that explain burrow density best. Functional corridors and barriers were mapped using burrow density thresholds. Cumulative resistance of the burrow distribution to potential disease spread was evaluated using cost distance analysis. A 46-year plague surveillance dataset was used to evaluate whether plague spread was radially symmetric. Results The burrow distribution was found to be non-random and negatively correlated with Greenness, especially in the floodplain areas. Corridors and barriers showed a mostly NWSE alignment, suggesting easier spreading along this axis. This was confirmed by the analysis of the plague data. Conclusions Plague spread had a predominantly NWSE direction, which is likely due to the NWSE alignment of corridors and barriers in the burrow distribution and the landscape. This finding may improve predictions of plague in the future and emphasizes the importance of including landscape analysis in wildlife disease studies. PMID:24171709

A spatial analysis of the Burrowing Owl (Speotyto cunicularia) population in Santa Clara County, California, using a geographic information system

Treesearch

Janice Taylor Buchanan

1997-01-01

A small population of Burrowing Owls (Speotyto cunicularia) is found in the San Francisco Bay Area, particularly in Santa Clara County. These owls utilize habitat that is dispersed throughout this heavily urbanized region. In an effort to establish a conservation plan for Burrowing Owls in Santa Clara County, a spatial analysis of owl distribution...

The Evolutionary Ecology of Biotic Association in a Megadiverse Bivalve Superfamily: Sponsorship Required for Permanent Residency in Sediment

PubMed Central

Li, Jingchun; Ó Foighil, Diarmaid; Middelfart, Peter

2012-01-01

Background Marine lineage diversification is shaped by the interaction of biotic and abiotic factors but our understanding of their relative roles is underdeveloped. The megadiverse bivalve superfamily Galeommatoidea represents a promising study system to address this issue. It is composed of small-bodied clams that are either free-living or have commensal associations with invertebrate hosts. To test if the evolution of this lifestyle dichotomy is correlated with specific ecologies, we have performed a statistical analysis on the lifestyle and habitat preference of 121 species based on 90 source documents. Methodology/Principal Findings Galeommatoidea has significant diversity in the two primary benthic habitats: hard- and soft-bottoms. Hard-bottom dwellers are overwhelmingly free-living, typically hidden within crevices of rocks/coral heads/encrusting epifauna. In contrast, species in soft-bottom habitats are almost exclusively infaunal commensals. These infaunal biotic associations may involve direct attachment to a host, or clustering around its tube/burrow, but all commensals locate within the oxygenated sediment envelope produced by the host’s bioturbation. Conclusions/Significance The formation of commensal associations by galeommatoidean clams is robustly correlated with an abiotic environmental setting: living in sediments (). Sediment-dwelling bivalves are exposed to intense predation pressure that drops markedly with depth of burial. Commensal galeommatoideans routinely attain depth refuges many times their body lengths, independent of siphonal investment, by virtue of their host’s burrowing and bioturbation. In effect, they use their much larger hosts as giant auto-irrigating siphon substitutes. The evolution of biotic associations with infaunal bioturbating hosts may have been a prerequisite for the diversification of Galeommatoidea in sediments and has likely been a key factor in the success of this exceptionally diverse bivalve superfamily. PMID:22905116

Pupation Behaviors and Emergence Successes of Ectropis grisescens (Lepidoptera: Geometridae) in Response to Different Substrate Types and Moisture Contents.

PubMed

Wang, Huifang; Ma, Tao; Xiao, Qiang; Cao, Panrong; Chen, Xuan; Wen, Yuzhen; Xiong, Hongpeng; Qin, Wenquan; Liang, Shiping; Jian, Shengzhe; Li, Yanjun; Sun, Zhaohui; Wen, Xiujun; Wang, Cai

2017-12-08

Ectropis grisescens Warren (Lepidoptera: Geometridae) is one of the most severe pests of tea plants in China. This species commonly pupates in soil; however, little is known about its pupation ecology. In the present study, choice and no-choice tests were conducted to investigate the pupation behaviors and emergence success of E. grisescens in response to different substrates (sand, sandy loam 1, sandy loam 2, and silt loam) and moisture contents (5, 20, 35, 50, 65, and 80%). Moisture-choice bioassays showed that significantly more E. grisescens individuals pupated in or on soil (sandy loam 1 and 2 and silt loam) that was at the intermediate moisture levels, whereas 5%- and 35%-moisture sand was significantly more preferred over 80%-moisture sand for pupating. Substrate-choice bioassays showed that sand was most preferred by E. grisescens individuals at 20%- and 80%-moisture levels, but no preference was detected among the four substrates at 50%-moisture content. No-choice tests showed that the percentage of burrowed E. grisescens individuals and pupation depth were significantly lower when soil was dry (20% moisture) or wet (80% moisture). In addition, 20%-moisture sandy loam 2 and silt loam significantly decreased the body water content of pupae and emergence success of adults compared to 50%-moisture content. However, each measurement (percentage of burrowed individuals, pupation depth, body water content, or emergence success) was similar when compared among different moisture levels of sand. Interestingly, pupae buried with 80%-moisture soil exhibited significantly lower emergence success than that were unburied. © The Authors 2017. Published by Oxford University Press on behalf of Entomological Society of America. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Anisian (Middle Triassic) marine ichnocoenoses from the eastern and western margins of the Kamdian Continent, Yunnan Province, SW China: Implications for the Triassic biotic recovery

NASA Astrophysics Data System (ADS)

Feng, Xueqian; Chen, Zhong-Qiang; Woods, Adam; Pei, Yu; Wu, Siqi; Fang, Yuheng; Luo, Mao; Xu, Yaling

2017-10-01

Two Anisian (Middle Triassic) marine ichnocoenoses are reported from the Boyun and Junmachang (JMC) sections located along the eastern and western margins of the Kamdian Continent, Yunnan Province, Southwest China, respectively. The Boyun ichnoassemblage is middle Anisian in age and is dominated by robust Rhizocorallium, while the JMC ichnoassemblage is of an early Anisian age and is characterized by the presence of Zoophycos. The ichnoassemblage horizons of the Boyun section represent an inner ramp environment, while the JMC section was likely situated in a mid-ramp setting near storm wave base as indicated by the presence of tempestites. The ichnofossil-bearing successions are usually highly bioturbated in both the Boyun (BI 3-5, BPBI 5) and JMC (BI 3-4, BPBI 3-4) sections. Three large, morphologically complicated ichnogenera: 1) Rhizocorallium; 2) Thalassinoides; and, 3) Zoophycos characterize the Anisian ichnocoenoses. Of these, Rhizocorallium has mean and maximum tube diameters up to 20.4 mm and 28 mm, respectively, while Thalassinoides mean and maximum tube diameters are 14.2 mm and 22 mm, respectively. Zoophycos is present in the early Anisian strata of the JMC section, and represents the oldest known occurrence of this ichnogenus following the latest Permian mass extinction. Similar to coeval ichnoassemblages elsewhere in the world, the Yunnan ichnocoenoses embrace a relatively low ichnodiversity, but their burrows usually penetrate deeply into the sediment, and include large and complex Rhizocorallium and Thalassinoides. All of these ichnologic features are indicative of recovery stage 4 after the latest Permian crisis. Anisian ichnoassemblages occur globally in six different habitat settings, and all show similar ecologic characteristics except for slightly different degrees of ichnotaxonomic richness, indicating that depositional environment is not a crucial factor shaping the recovery of the trace-makers, but may have an impact on their ichnodiversity. When compared with some important Early Triassic (mainly Spathian) ichnoassemblages worldwide, the Anisian ichnocoenoses examined for this study are slightly less diversified, and possess more or less the same maximum burrow sizes, but the penetration depth of burrows and the distribution of burrow sizes are much larger than those from the Early Triassic. It is worthy of note that the lower ichnodiversity of the Anisian ichnocoenoses may have resulted from intense bioturbation by deeper tiers, representing a taphonomic product that is totally unrelated to environmental stress. In addition, Anisian Rhizocorallium and Thalassinoides have much larger burrow sizes than the same ichnotaxa from the Lower Triassic, implying that ichnocoenoses may have recovered in Spathian, but did not stabilize until the Anisian.

Treatment of black-tailed prairie dog burrows with deltamethrin to control fleas (Insecta: Siphonaptera) and plague

USGS Publications Warehouse

Seery, D.B.; Biggins, D.E.; Montenieri, J.A.; Enscore, R.E.; Tanda, D.T.; Gage, K.L.

2003-01-01

Burrows within black-tailed prairie dog (Cynomys ludovicianus) colonies on the Rocky Mountain Arsenal National Wildlife Refuge, Colorado, were dusted with deltamethrin insecticide to reduce flea (Insecta: Siphonaptera) abundance. Flea populations were monitored pre- and posttreatment by combing prairie dogs and collecting fleas from burrows. A single application of deltamethrin significantly reduced populations of the plague vector Oropsylla hirsuta, and other flea species on prairie dogs and in prairie dog burrows for at least 84 d. A plague epizootic on the Rocky Mountain Arsenal National Wildlife Refuge caused high mortality of prairie dogs on some untreated colonies, but did not appear to affect nearby colonies dusted with deltamethrin.

The added value of stochastic spatial disaggregation for short-term rainfall forecasts currently available in Canada

NASA Astrophysics Data System (ADS)

Gagnon, Patrick; Rousseau, Alain N.; Charron, Dominique; Fortin, Vincent; Audet, René

2017-11-01

Several businesses and industries rely on rainfall forecasts to support their day-to-day operations. To deal with the uncertainty associated with rainfall forecast, some meteorological organisations have developed products, such as ensemble forecasts. However, due to the intensive computational requirements of ensemble forecasts, the spatial resolution remains coarse. For example, Environment and Climate Change Canada's (ECCC) Global Ensemble Prediction System (GEPS) data is freely available on a 1-degree grid (about 100 km), while those of the so-called High Resolution Deterministic Prediction System (HRDPS) are available on a 2.5-km grid (about 40 times finer). Potential users are then left with the option of using either a high-resolution rainfall forecast without uncertainty estimation and/or an ensemble with a spectrum of plausible rainfall values, but at a coarser spatial scale. The objective of this study was to evaluate the added value of coupling the Gibbs Sampling Disaggregation Model (GSDM) with ECCC products to provide accurate, precise and consistent rainfall estimates at a fine spatial resolution (10-km) within a forecast framework (6-h). For 30, 6-h, rainfall events occurring within a 40,000-km2 area (Québec, Canada), results show that, using 100-km aggregated reference rainfall depths as input, statistics of the rainfall fields generated by GSDM were close to those of the 10-km reference field. However, in forecast mode, GSDM outcomes inherit of the ECCC forecast biases, resulting in a poor performance when GEPS data were used as input, mainly due to the inherent rainfall depth distribution of the latter product. Better performance was achieved when the Regional Deterministic Prediction System (RDPS), available on a 10-km grid and aggregated at 100-km, was used as input to GSDM. Nevertheless, most of the analyzed ensemble forecasts were weakly consistent. Some areas of improvement are identified herein.

Documenting Western Burrowing Owl Reproduction and Activity Patterns Using Motion-Activated Cameras

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hall, Derek B.; Greger, Paul D.

We used motion-activated cameras to monitor the reproduction and patterns of activity of the Burrowing Owl (Athene cunicularia) above ground at 45 burrows in south-central Nevada during the breeding seasons of 1999, 2000, 2001, and 2005. The 37 broods, encompassing 180 young, raised over the four years represented an average of 4.9 young per successful breeding pair. Young and adult owls were detected at the burrow entrance at all times of the day and night, but adults were detected more frequently during afternoon/early evening than were young. Motion-activated cameras require less effort to implement than other techniques. Limitations include photographingmore » only a small percentage of owl activity at the burrow; not detecting the actual number of eggs, young, or number fledged; and not being able to track individual owls over time. Further work is also necessary to compare the accuracy of productivity estimates generated from motion-activated cameras with other techniques.« less

Gopherus agassizii (desert tortoise). Burrow collapse

USGS Publications Warehouse

Loughran, Caleb L.; Ennen, Joshua; Lovich, Jeffrey E.

2011-01-01

In the deserts of the southwestern U.S., burrows are utilized by the Desert Tortoise to escape environmental extremes (reviewed by Ernst and Lovich 2009. Turtles of the United States and Canada. 2nd ed. Johns Hopkins Univ. Press, Baltimore, Maryland. 827 pp.). However, the potential for mortality through burrow collapse and entrapment is poorly documented. Nicholson and Humphreys (1981. Proceedings of the Desert Tortoise Council, pp. 163−194) suggested that collapse due to livestock trampling may cause mortality. In addition, Lovich et al. (2011. Chelon. Cons. Biol. 10[1]:124–129) documented a Desert Tortoise that used a steel culvert as a burrow surrogate. The culvert filled completely with sediment following a significant rain event, entombing the animal and ultimately resulting in its death. We note that this mortality was associated with an anthropogenic structure; because tortoises are prodigious diggers, one might hypothesize that they have the ability to dig out of collapsed natural burrows in most situations. Circumstances described here presented us with an opportunity to test this hypothesis.

Estimating Occupancy of Gopher Tortoise (Gorpherus polyphemus) Burrows in Coastal Scrub and Slash Pine Flatwoods

NASA Technical Reports Server (NTRS)

Breininger, David R.; Schmalzer, Paul A.; Hinkle, C. Ross

1991-01-01

One hundred twelve plots were established in coastal scrub and slash pine flatwoods habitats on the John F. Kennedy Space Center (KSC) to evaluate relationships between the number of burrows and gopher tortoise (Gopherus polyphemus) density. All burrows were located within these plots and were classified according to tortoise activity. Depending on season, bucket trapping, a stick method, a gopher tortoise pulling device, and a camera system were used to estimate tortoise occupancy. Correction factors (% of burrows occupied) were calculated by season and habitat type. Our data suggest that less than 20% of the active and inactive burrows combined were occupied during seasons when gopher tortoises were active. Correction factors were higher in poorly-drained areas and lower in well-drained areas during the winter, when gopher tortoise activity was low. Correction factors differed from studies elsewhere, indicating that population estimates require correction factors specific to the site and season to accurately estimate population size.

Use of multi-opening burrow systems by black-footed ferrets

USGS Publications Warehouse

Biggins, Dean E.

2012-01-01

Multi-opening burrow systems constructed by prairie dogs (Cynomys) ostensibly provide escape routes when prairie dogs are pursued by predators capable of entering the burrows, such as black-footed ferrets (Mustela nigripes), or by predators that can rapidly dig into the tunnels, such as American badgers (Taxidea taxus). Because badgers also prey on ferrets, ferrets might similarly benefit from multi-opening burrow systems. Using an air blower, white-tailed prairie dog (Cynomys leucurus) burrow openings were tested for connectivity on plots occupied by black-footed ferrets and on randomly selected plots in Wyoming. Significantly more connected openings were found on ferret-occupied plots than on random plots. Connected openings might be due to modifications by ferrets in response to plugging by prairie dogs, due to selection by ferrets for complex systems with multiple openings that are already unobstructed, or simply due to ferrets lingering at kill sites that were multi-opening systems selected by their prairie dog prey.

75 FR 60515 - Endangered and Threatened Wildlife and Plants; 12-Month Finding on a Petition to List the Pygmy...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-09-30

... rabbit is one of only two rabbits in North America that digs its own burrows (Nelson 1909, p. 22; Bailey... predators and inclement weather (Bailey 1936, p. 111; Bradfield 1974, pp. 26-27). Some burrows have only one.... 44; Gahr 1993, pp. 66, 68; Heady 1998, p. 25). Pygmy rabbits may also be using more than one burrow...

Burrow Dusting or Oral Vaccination Prevents Plague-Associated Prairie Dog Colony Collapse.

PubMed

Tripp, Daniel W; Rocke, Tonie E; Runge, Jonathan P; Abbott, Rachel C; Miller, Michael W

2017-09-01

Plague impacts prairie dogs (Cynomys spp.), the endangered black-footed ferret (Mustela nigripes) and other sensitive wildlife species. We compared efficacy of prophylactic treatments (burrow dusting with deltamethrin or oral vaccination with recombinant "sylvatic plague vaccine" [RCN-F1/V307]) to placebo treatment in black-tailed prairie dog (C. ludovicianus) colonies. Between 2013 and 2015, we measured prairie dog apparent survival, burrow activity and flea abundance on triplicate plots ("blocks") receiving dust, vaccine or placebo treatment. Epizootic plague affected all three blocks but emerged asynchronously. Dust plots had fewer fleas per burrow (P < 0.0001), and prairie dogs captured on dust plots had fewer fleas (P < 0.0001) than those on vaccine or placebo plots. Burrow activity and prairie dog density declined sharply in placebo plots when epizootic plague emerged. Patterns in corresponding dust and vaccine plots were less consistent and appeared strongly influenced by timing of treatment applications relative to plague emergence. Deltamethrin or oral vaccination enhanced apparent survival within two blocks. Applying insecticide or vaccine prior to epizootic emergence blunted effects of plague on prairie dog survival and abundance, thereby preventing colony collapse. Successful plague mitigation will likely entail strategic combined uses of burrow dusting and oral vaccination within large colonies or colony complexes.

Burrow dusting or oral vaccination prevents plague-associated prairie dog colony collapse

USGS Publications Warehouse

Tripp, Daniel W.; Rocke, Tonie E.; Runge, Jonathan P.; Abbott, Rachel C.; Miller, Michael W.

2017-01-01

Plague impacts prairie dogs (Cynomys spp.), the endangered black-footed ferret (Mustela nigripes) and other sensitive wildlife species. We compared efficacy of prophylactic treatments (burrow dusting with deltamethrin or oral vaccination with recombinant “sylvatic plague vaccine” [RCN-F1/V307]) to placebo treatment in black-tailed prairie dog (C. ludovicianus) colonies. Between 2013 and 2015, we measured prairie dog apparent survival, burrow activity and flea abundance on triplicate plots (“blocks”) receiving dust, vaccine or placebo treatment. Epizootic plague affected all three blocks but emerged asynchronously. Dust plots had fewer fleas per burrow (P < 0.0001), and prairie dogs captured on dust plots had fewer fleas (P < 0.0001) than those on vaccine or placebo plots. Burrow activity and prairie dog density declined sharply in placebo plots when epizootic plague emerged. Patterns in corresponding dust and vaccine plots were less consistent and appeared strongly influenced by timing of treatment applications relative to plague emergence. Deltamethrin or oral vaccination enhanced apparent survival within two blocks. Applying insecticide or vaccine prior to epizootic emergence blunted effects of plague on prairie dog survival and abundance, thereby preventing colony collapse. Successful plague mitigation will likely entail strategic combined uses of burrow dusting and oral vaccination within large colonies or colony complexes.

Distribution, abundance, and habitat use of the endangered blunt-nosed leopard lizard on the Naval Petroleum Reserves, Kern County, California

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kato, T.T.; Rose, B.R.; O'Farrell, T.P.

1987-09-01

The distribution, abundance, and habitat use of the endangered blunt-nosed leopard lizard, Gambelia silus, was studied on and adjacent to Naval Petroleum Reserves No. 1 (NPR-1, Elk Hills), and No. 2 (NPR-2, Buena Vista), Kern County, CAlifornia. A total of 262 blunt-nosed leopard lizards were seen over 8 years (1979-1987) in 28 sections of NPR-1, 15 sections of NPR-2, and 10 sections adjacent to the petroleum reserves. All but one were in areas of gentle or flat relief with sparse annual ground cover. Home range size and overlap, activity patterns, and habitat use were determined from monitoring blunt-nosed leopard lizardsmore » fitted with miniature radiocollars on two study sites. Mean home range size estimated by the minimum polygon method was 2.7 acres for female blunt-nosed leopard lizards, which was significantly smaller than the 5.4 acres mean home range size for males inhabiting a major wash. The structure of the habitat affected significantly the lizards' activity and burrow use. Lizards inhabiting the wash study site were more frequently seen on the surface not associated with a burrow than lizards in the more sparsely vegetated grassland study site (63% compared with 48% of their sightings); 51.5% of the sightings for lizards in the grassland study site were associated with burrows, compared with 37.1% for lizards in the wash study site. Burrows were not shared and some burrows were used more than once (30% of burrows and 62% of burrow sightings).« less

The Analysis of Burrows Recognition Accuracy in XINJIANG'S Pasture Area Based on Uav Visible Images with Different Spatial Resolution

NASA Astrophysics Data System (ADS)

Sun, D.; Zheng, J. H.; Ma, T.; Chen, J. J.; Li, X.

2018-04-01

The rodent disaster is one of the main biological disasters in grassland in northern Xinjiang. The eating and digging behaviors will cause the destruction of ground vegetation, which seriously affected the development of animal husbandry and grassland ecological security. UAV low altitude remote sensing, as an emerging technique with high spatial resolution, can effectively recognize the burrows. However, how to select the appropriate spatial resolution to monitor the calamity of the rodent disaster is the first problem we need to pay attention to. The purpose of this study is to explore the optimal spatial scale on identification of the burrows by evaluating the impact of different spatial resolution for the burrows identification accuracy. In this study, we shoot burrows from different flight heights to obtain visible images of different spatial resolution. Then an object-oriented method is used to identify the caves, and we also evaluate the accuracy of the classification. We found that the highest classification accuracy of holes, the average has reached more than 80 %. At the altitude of 24 m and the spatial resolution of 1cm, the accuracy of the classification is the highest We have created a unique and effective way to identify burrows by using UAVs visible images. We draw the following conclusion: the best spatial resolution of burrows recognition is 1 cm using DJI PHANTOM-3 UAV, and the improvement of spatial resolution does not necessarily lead to the improvement of classification accuracy. This study lays the foundation for future research and can be extended to similar studies elsewhere.

Traces and burrowing behaviors of the Cicada nymph Cicadetta calliope: Neoichnology and paleoecological significance of extant soil-dwelling insects

USGS Publications Warehouse

Smith, J.J.; Hasiotis, S.T.

2008-01-01

This study documents the traces and burrowing behaviors of nymphs of the prairie cicada Cicadetta calliope (Hemiptera: Cicadidae), as observed in neoichnological experiments. Cicada nymphs were collected from the C horizons of sandy Fluvents along the Kansas River east of Lawrence, Kansas. The nymphs appeared to be fifth instars, 13-17 mm long and 6-7 mm wide. Nymphs were placed in plastic enclosures containing layers of colored, moist, very fine-grained sand. They burrowed immediately, excavating air-filled, sediment-enclosed cells between 20 mm and 40 mm long and averaging 9 mm wide. Burrowing was completed in three stages: (1) sediment in the forward portion of the cell was excavated and rolled into a ball with the forelimbs; (2) the nymph turned 180?? using a forward roll, and moved to the back of the cell; and (3) the sediment ball was pushed up against the back wall of the cell and kneaded with the forelimbs into a thin layer. Resulting burrow traces are sinuous and distinctly meniscate and demonstrate that insect larvae construct meniscate, backfilled burrows in well-drained terrestrial settings. Cicadetta calliope nymphs and their traces are excellent analogs for meniscate trace fossils commonly found in late Paleozoic-Cenozoic alluvial deposits and paleosols. Such meniscate trace fossils are useful for interpreting the paleoenvironment and paleohydrogeology of the units in which they are found. In addition, such backfilled burrows can be used to supplement the fossil record of cicada-like hemipterans, currently known only from the latest Permian to the Early Triassic. Copyright ?? 2008, SEPM (Society for Sedimentary Geology).

Seasonal temperature acclimatization in a semi-fossorial mammal and the role of burrows as thermal refuges

PubMed Central

Rachlow, Janet L.; Chappell, Mark A.; Camp, Meghan J.; Johnson, Timothy R.; Shipley, Lisa A.; Paul, David R.; Forbey, Jennifer S.

2018-01-01

Small mammals in habitats with strong seasonal variation in the thermal environment often exhibit physiological and behavioral adaptations for coping with thermal extremes and reducing thermoregulatory costs. Burrows are especially important for providing thermal refuge when above-ground temperatures require high regulatory costs (e.g., water or energy) or exceed the physiological tolerances of an organism. Our objective was to explore the role of burrows as thermal refuges for a small endotherm, the pygmy rabbit (Brachylagus idahoensis), during the summer and winter by quantifying energetic costs associated with resting above and below ground. We used indirect calorimetry to determine the relationship between energy expenditure and ambient temperature over a range of temperatures that pygmy rabbits experience in their natural habitat. We also measured the temperature of above- and below-ground rest sites used by pygmy rabbits in eastern Idaho, USA, during summer and winter and estimated the seasonal thermoregulatory costs of resting in the two microsites. Although pygmy rabbits demonstrated seasonal physiological acclimatization, the burrow was an important thermal refuge, especially in winter. Thermoregulatory costs were lower inside the burrow than in above-ground rest sites for more than 50% of the winter season. In contrast, thermal heterogeneity provided by above-ground rest sites during summer reduced the role of burrows as a thermal refuge during all but the hottest periods of the afternoon. Our findings contribute to an understanding of the ecology of small mammals in seasonal environments and demonstrate the importance of burrows as thermal refuge for pygmy rabbits. PMID:29576977

Bridge Frost Prediction by Heat and Mass Transfer Methods

NASA Astrophysics Data System (ADS)

Greenfield, Tina M.; Takle, Eugene S.

2006-03-01

Frost on roadways and bridges can present hazardous conditions to motorists, particularly when it occurs in patches or on bridges when adjacent roadways are clear of frost. To minimize materials costs, vehicle corrosion, and negative environmental impacts, frost-suppression chemicals should be applied only when, where, and in the appropriate amounts needed to maintain roadways in a safe condition for motorists. Accurate forecasts of frost onset times, frost intensity, and frost disappearance (e.g., melting or sublimation) are needed to help roadway maintenance personnel decide when, where, and how much frost-suppression chemical to use. A finite-difference algorithm (BridgeT) has been developed that simulates vertical heat transfer in a bridge based on evolving meteorological conditions at its top and bottom as supplied by a weather forecast model. BridgeT simulates bridge temperatures at numerous points within the bridge (including its upper and lower surface) at each time step of the weather forecast model and calculates volume per unit area (i.e., depth) of deposited, melted, or sublimed frost. This model produces forecasts of bridge surface temperature, frost depth, and bridge condition (i.e., dry, wet, icy/snowy). Bridge frost predictions and bridge surface temperature are compared with observed and measured values to assess BridgeT's skill in forecasting bridge frost and associated conditions.

Parametrisation of initial conditions for seasonal stream flow forecasting in the Swiss Rhine basin

NASA Astrophysics Data System (ADS)

Schick, Simon; Rössler, Ole; Weingartner, Rolf

2016-04-01

Current climate forecast models show - to the best of our knowledge - low skill in forecasting climate variability in Central Europe at seasonal lead times. When it comes to seasonal stream flow forecasting, initial conditions thus play an important role. Here, initial conditions refer to the catchments moisture at the date of forecast, i.e. snow depth, stream flow and lake level, soil moisture content, and groundwater level. The parametrisation of these initial conditions can take place at various spatial and temporal scales. Examples are the grid size of a distributed model or the time aggregation of predictors in statistical models. Therefore, the present study aims to investigate the extent to which the parametrisation of initial conditions at different spatial scales leads to differences in forecast errors. To do so, we conduct a forecast experiment for the Swiss Rhine at Basel, which covers parts of Germany, Austria, and Switzerland and is southerly bounded by the Alps. Seasonal mean stream flow is defined for the time aggregation of 30, 60, and 90 days and forecasted at 24 dates within the calendar year, i.e. at the 1st and 16th day of each month. A regression model is employed due to the various anthropogenic effects on the basins hydrology, which often are not quantifiable but might be grasped by a simple black box model. Furthermore, the pool of candidate predictors consists of antecedent temperature, precipitation, and stream flow only. This pragmatic approach follows the fact that observations of variables relevant for hydrological storages are either scarce in space or time (soil moisture, groundwater level), restricted to certain seasons (snow depth), or regions (lake levels, snow depth). For a systematic evaluation, we therefore focus on the comprehensive archives of meteorological observations and reanalyses to estimate the initial conditions via climate variability prior to the date of forecast. The experiment itself is based on four different approaches, whose differences in model skill were estimated within a rigorous cross-validation framework for the period 1982-2013: The predictands are regressed on antecedent temperature, precipitation, and stream flow. Here, temperature and precipitation constitute basin averages out of the E-OBS gridded data set. As in 1., but temperature and precipitation are used at the E-OBS grid scale (0.25 degree in longitude and latitude) without spatial averaging. As in 1., but the regression model is applied to 66 gauged subcatchments of the Rhine basin. Forecasts for these subcatchments are then simply summed and upscaled to the area of the Rhine basin. As in 3., but the forecasts at the subcatchment scale are additionally weighted in terms of hydrological representativeness of the corresponding subcatchment.

Final Environmental Assessment, Reeds Creek Restoration at Beale Air Force Base, California

DTIC Science & Technology

2012-08-01

vegetated banks to provide basking and foraging habitat and escape cover during the active season; 3) upland habitat (e.g., bankside burrows , holes...Disturbance to all hibernacula and aestivation areas (i.e., rocks, burrows , logs, brush piles, etc.) as well as dewatering will be avoided during cold or...Disturbance Avoidance. Disturbance to all hibernacula and aestivation areas (i.e., rocks, burrows , logs, brush piles, etc.) as well as dewatering will be

Acquisition of Resort Property Located in Indian Springs, Nevada, Environmental Assessment

DTIC Science & Technology

2011-12-01

include known desert tortoise or burrowing owl habitat, and it is highly unlikely that either species would be present in the project area due to...redtailed hawk (Buteo jamaicensis), ferruginous hawk (Buteo regalis), and northern harrier (Circus cyaneus). Burrowing owls occur at the northern end of...Species The desert tortoise and burrowing owl are the only special-status plant or animal species known, or likely to occur in the areas subject to

The Challenge of Small Satellite Systems to the Space Security Environment

DTIC Science & Technology

2012-03-01

Space, 1945–1995, (New York: Dodd, Mead & Company, Inc. 1984), 142. 40 Moltz, The Politics of Space Security, 93. 41William E. Burrows , Deep Black...90 Stares, The Militarization of Space, 170. 91 Ibid. 92 Burrows , Deep Black, 279- 280. 30 to gather together in 1978 at the request...www.technologynewsroom.com/press_releases/company_releases.aspx?sto ry=522. Burrows , William E. Deep Black: Space Espionage and National Security

Factors influencing nesting success of burrowing owls in southeastern Idaho

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gleason, R.S.; Johnson, D.R.

1985-01-31

A burrowing owl (Athene cunicularia) population nesting on the Idaho National Engineering Laboratory (INEL) in southeastern Idaho utilized burrows excavated by badgers (Taxidea taxus) or natural cavities in lava flows as nesting sites. The size of the population was small (N = 13-14 pairs) in relation to the number of available nesting sites, suggesting that factors other than burrow availability limited this population. Rodents and Jerusalem crickets (Stenopelmatus fuscus) represented the primary prey utilized during the nesting season. This population demonstrated both a numerical (brood size) and functional (dietary) response to a decrease in the density of three species ofmore » rodents on the INEL during a drought in 1977. 11 references, 1 figure, 2 table.« less

An ecological engineering approach for keeping water from reaching interred wastes in arid or semiarid regions

DOE Office of Scientific and Technical Information (OSTI.GOV)

Anderson, J.E.

1997-12-31

This paper describes application of a soil-plant cover system (SPCS) to preclude water from reaching interred wastes in arid and semiarid regions. Where potential evapotranspiration far exceeds precipitation, water can be kept from reaching buried wastes by (1) providing a sufficiently deep cap of soil to store precipitation that falls while plants are dormant and (2) maintaining plant cover to deplete soil moisture during the growing season, thereby emptying the storage reservoir. Research at the Idaho National Engineering Laboratory (INEL) has shown that 2 m of soil is adequate to store moisture from snowmelt and spring rains. Healthy stands ofmore » perennial grasses and shrubs adapted to the INEL climate use all available soil moisture, even during a very wet growing season. However, burrowing by small mammals or ants may affect the performance of a SPCS by increasing infiltration of water. Intrusion barriers of gravel and cobble can be used to restrict burrowing, but emplacement of such barriers affects soil moisture storage and plant rooting depths. A replicated field experiment to investigate the implications of those effects is in progress. Incorporation of an SPCS should be considered in the design of isolation barriers for shallow land burial of hazardous wastes in and regions.« less

Delphi in Criminal Justice Policy: A Case Study on Judgmental Forecasting

ERIC Educational Resources Information Center

Loyens, Kim; Maesschalck, Jeroen; Bouckaert, Geert

2011-01-01

This article provides an in-depth case study analysis of a pilot project organized by the section "Strategic Analysis" of the Belgian Federal Police. Using the Delphi method, which is a judgmental forecasting technique, a panel of experts was questioned about future developments of crime, based on their expertise in criminal or social…

Belted kingfishers: Under surveillance and sampled in the privacy of their own burrow

DOE Office of Scientific and Technical Information (OSTI.GOV)

Baron, L.A.; Ashwood, T.L.

The belted kingfisher, a common piscivore of the Oak Ridge Reservation (ORR), bioaccumulates contaminants from consumption of aquatic prey. Three kingfisher carcasses found near contaminated streams on the ORR were analyzed. Mercury, cadmium, and selenium bioaccumulated within the liver, kidney, and feathers. Additionally, PCB-1254 accumulated in muscle and lipid tissue, while Cesium-137 accumulated within the muscle and whole body. These contaminant levels have been shown to produce a variety of toxicological effects (i.e., reproductive impairment, central nervous system dysfunction) within other species of birds. In addition to use of this data for ecological risk assessment, kingfishers can also be monitoredmore » as a viable bioindicator species reflecting environmental contaminant levels over time. However, current sampling methods of burrow excavation or the use of mist nets can be detrimental to the reproductive success of the birds. The authors present a method for obtaining adequate samples of feathers and other remnants (i.e., egg shells, dried regurgitant) found in the burrow during or following the nesting season. The collection of samples following surveillance of the burrow and its contents was performed with the use of a 15 ft-long flexible, portable probe containing a video camera. Once sighted with the probe, contents of the burrow were collected by insertion of an additional tube attached to a hand held vacuum cleaner (Dirt Devil{reg_sign}). Feathers collected from a nest at an uncontaminated site contained selenium, lead and mercury. Cesium-137 was found in an egg shell collected from a nest at a radiologically contaminated site. Close-up photos of a kingfisher mother incubating her eggs and nestlings within two burrows will also be shown. This surveillance and sampling technique can also be used for monitoring other burrowing terrestrial species.« less

Ontogenetic scaling of burrowing forces in the earthworm Lumbricus terrestris.

PubMed

Quillin, K J

2000-09-01

In hydrostatic skeletons, it is the internal fluid under pressure surrounded by a body wall in tension (rather than a rigid lever) that enables the stiffening of the organism, the antagonism of muscles and the transmission of force from the muscles to the environment. This study examined the ontogenetic effects of body size on force production by an organism supported with a hydrostatic skeleton. The earthworm Lumbricus terrestris burrows by forcefully enlarging crevices in the soil. I built a force-measuring apparatus that measured the radial forces as earthworms of different sizes crawled through and enlarged pre-formed soil burrows. I also built an apparatus that measured the radial and axial forces as earthworms of different sizes attempted to elongate a dead-end burrow. Earthworms ranging in body mass m(b) from hatchlings (0.012 g) to adults (8.9 g) exerted maximum forces (F, in N) during active radial expansion of their burrows (F=0.32 m(b)(0.43)) and comparable forces during axial elongation of the burrow (F=0.26 m(b)(0.47)). Both these forces were almost an order of magnitude greater than the radial anchoring forces during normal peristalsis within burrows (F=0.04 m(b)(0.45)). All radial and axial forces scaled as body mass raised to the 2/5 power rather than to the 2/3 power expected by geometric similarity, indicating that large worms exert greater forces than small worms on an absolute scale, but the difference was less than predicted by scaling considerations. When forces were normalized by body weight, hatchlings could push 500 times their own body weight, while large adults could push only 10 times their own body weight.

ARC-1993-AC93-0121-1

NASA Image and Video Library

1993-05-10

Burrowing Owls keep watch over Moffett Field wetlands. The burrowing owl is currently listed as a Species of Special Concern in California. Data collected since 1992 at Moffett Field suggest that the population at Moffett Field is the largest sub-population of owls in the region. Thus, the Moffett Field population is an important site for the long-term survival of burrowing owls in the Bay Area (Trulio 1999). used in Ames 60 yr. History NASA SP-2000-4314

The influence of foraging mode and arid adaptation on the basal metabolic rates of burrowing mammals.

PubMed

White, Craig R

2003-01-01

Two competing but nonexclusive hypotheses to explain the reduced basal metabolic rate (BMR) of mammals that live and forage underground (fossorial species) are examined by comparing this group with burrowing mammals that forage on the surface (semifossorial species). These hypotheses suggest that the low BMR of fossorial species either compensates for the enormous energetic demands of subterranean foraging (the cost-of-burrowing hypothesis) or prevents overheating in closed burrow systems (the thermal-stress hypothesis). Because phylogentically informed allometric analysis showed that arid burrowing mammals have a significantly lower BMR than mesic ones, fossorial and semifossorial species were compared within these groups. The BMRs of mesic fossorial and semifossorial mammals could not be reliably distinguished, nor could the BMRs of large (>77 g) arid fossorial and semifossorial mammals. This finding favours the thermal-stress hypothesis, because the groups appear to have similar BMRs despite differences in foraging costs. However, in support of the cost-of-burrowing hypothesis, small (<77 g) arid fossorial mammals were found to have a significantly lower BMR than semifossorial mammals of the similar size. Given the high mass-specific metabolic rates of small animals, they are expected to be under severe energy and water stress in arid environments. Under such conditions, the greatly reduced BMR of small fossorial species may compensate for the enormous energetic demands of subterranean foraging.

Use of local cues in the night-time navigation of the wandering desert spider Leucorchestris arenicola (Araneae, Sparassidae).

PubMed

Nørgaard, Thomas; Henschel, Joh R; Wehner, Rüdiger

2007-02-01

Adult male Leucorchestris arenicola can walk round-trips of several tens of meters in search of females. Most excursions end with the spiders returning to their burrow. For small animals homing over distances of several meters is theoretically impossible without the aid of external cues. It was investigated, whether the spiders use local cues or they rely solely on global cues. Individually marked male spiders were captured during their excursions and displaced several meters inside an opaque box. Ten out of twelve displaced spiders returned to their burrows. This shows that the male L. arenicola are using local cues during their homing, as the comparatively small displacement distances could not be detected by means of global, e.g. celestial cues. In order to test whether the spiders could be using olfactory guidance, the burrows were displaced by 2 m while the spiders were out on their journeys. In 12 out of 15 experiments, the spiders did not find their burrows. These results show that the burrows do not function as olfactory beacons for the homing spiders.

Black-footed ferret digging activity in summer

USGS Publications Warehouse

Eads, David A.; Biggins, Dean E.; Marsh, Dustin; Millspaugh, Joshua J.; Livieri, Travis M.

2012-01-01

Black-footed ferrets (Mustela nigripes) excavate soil from prairie dog (Cynomys spp.) burrows, thereby creating characteristic soil deposits at burrow openings. These soil deposits have been observed only rarely in summer. We monitored adult ferrets during June–October of the years 2007 and 2008 on a 452-ha colony of black-tailed prairie dogs (Cynomys ludovicianus) in the Conata Basin, South Dakota. We located and identified ferret excavations during nighttime spotlight surveys for ferrets and daytime sampling of prairie dog burrow openings around locations where ferrets were located via spotlight. We accumulated 48 observations of in-process or recently completed ferret excavations during spotlight surveys (21 in 2007, 27 in 2008) and located 51 diggings during daytime burrow sampling (25 in 2007, 26 in 2008). We located diggings during 5.5% of spotlight observations, most frequently in July–August. These results collectively suggest ferrets may frequently excavate soil in summer, because prairie dogs frequently use soil to plug burrow openings and tunnels in defense against ferrets. Prairie dogs might frequently destroy soil deposits left by ferrets during summer, thereby reducing detection of diggings by biologists.

Shifts in the diets of slimy sculpin (Cottus cognatus) and lake whitefish (Coregonus clupeaformis) in Lake Ontario following the collapse of the burrowing amphipod Diporeia

USGS Publications Warehouse

Owens, Randall W.; Dittman, Dawn E.

2003-01-01

In Lake Ontario, the diets of slimy sculpin Cottus cognatus and lake whitefish Coregonus clupeaformis shifted from a diet dominated by the burrowing amphipod, Diporeia, and to a lesser extent, Mysis, to a more diverse diet, after Diporeia collapsed, to one dominated by Mysis and prey that were formerly less important or uncommon such as Chironomidae, Oligochaeta, and Ostracoda. Additionally, lake whitefish still preyed on native mollusks like Sphaeriidae and Gastropoda, but also preyed on exotic mollusks, Dreissena spp., which are swallowed intact and subsequently crushed in its muscular stomach. Whether Diporeia was abundant (1992) or scarce (1999), selection indices for Diporeia by slimy sculpins was positive, suggesting that Diporeia was a preferred prey. Unlike lake whitefish, slimy sculpins avoided Dreissena; therefore, energy diverted to Dreissena production was a real loss for slimy sculpins. The shifts in the diet of these benthic fishes corresponded with drastic changes in the benthic community between 1992 and 1999. The collapse of Diporeia, formerly the most abundant macroinvertebrate in the benthic community, along with sharp declines in the abundance of Oligochaeta and Sphaeriidae, coincided with the establishment and rapid expansion of Dreissena bugensis, the quagga mussel, and to a lesser degree Dreissena polymorpha, the zebra mussel. It appears that the Diporeia population first collapsed at depths >70 m in southeastern Lake Ontario by autumn 1992, at shallower depths in the eastern Lake Ontario by 1995, and along the entire south shore line at depths <100 m, and perhaps in some areas >100 m by 1999. In response to the disappearance of Diporeia, populations of two native benthivores, slimy sculpin and lake whitefish, collapsed in eastern Lake Ontario, perhaps due in part to starvation, because Diporeia was their principal prey. Presently, alternative food resources do not appear sufficient to sustain these two benthivores at their former levels of abundance. We do not expect slimy sculpin and lake whitefish to recover unless Diporeia returns to earlier levels of abundance.

Uses and Applications of Climate Forecasts for Power Utilities.

NASA Astrophysics Data System (ADS)

Changnon, Stanley A.; Changnon, Joyce M.; Changnon, David

1995-05-01

The uses and potential applications of climate forecasts for electric and gas utilities were assessed 1) to discern needs for improving climate forecasts and guiding future research, and 2) to assist utilities in making wise use of forecasts. In-depth structured interviews were conducted with 56 decision makers in six utilities to assess existing and potential uses of climate forecasts. Only 3 of the 56 use forecasts. Eighty percent of those sampled envisioned applications of climate forecasts, given certain changes and additional information. Primary applications exist in power trading, load forecasting, fuel acquisition, and systems planning, with slight differences in interests between utilities. Utility staff understand probability-based forecasts but desire climatological information related to forecasted outcomes, including analogs similar to the forecasts, and explanations of the forecasts. Desired lead times vary from a week to three months, along with forecasts of up to four seasons ahead. The new NOAA forecasts initiated in 1995 provide the lead times and longer-term forecasts desired. Major hindrances to use of forecasts are hard-to-understand formats, lack of corporate acceptance, and lack of access to expertise. Recent changes in government regulations altered the utility industry, leading to a more competitive world wherein information about future weather conditions assumes much more value. Outreach efforts by government forecast agencies appear valuable to help achieve the appropriate and enhanced use of climate forecasts by the utility industry. An opportunity for service exists also for the private weather sector.

Non-Native Suckermouth Armored Catfishes in Florida: Description of Nest Borrows and Burrow Colonies with Assessment of Shoreline Conditions

DTIC Science & Technology

2009-04-01

were found within the uppermost meter of the bank. The portion of the banks with burrows typically contained few leafy or herbaceous plants . How...ever, as is normal in riverine envi- ronments, herbaceous and some small woody plants were found sprouting within burrow colonies exposed by low...water. As would be expected, the longer the expo- sure, the greater the plant cover- age. However, even in exposed areas the vegetation was

A Local Forecast of Land Surface Wetness Conditions, Drought, and St. Louis Encephalitis Virus Transmission Derived from Seasonal Climate Predictions

NASA Astrophysics Data System (ADS)

Shaman, J.; Stieglitz, M.; Zebiak, S.; Cane, M.; Day, J. F.

2002-12-01

We present an ensemble local hydrologic forecast derived from the seasonal forecasts of the International Research Institute (IRI) for Climate Prediction. Three- month seasonal forecasts were used to resample historical meteorological conditions and generate ensemble forcing datasets for a TOPMODEL-based hydrology model. Eleven retrospective forecasts were run at a Florida and New York site. Forecast skill was assessed for mean area modeled water table depth (WTD), i.e. near surface soil wetness conditions, and compared with WTD simulated with observed data. Hydrology model forecast skill was evident at the Florida site but not at the New York site. At the Florida site, persistence of hydrologic conditions and local skill of the IRI seasonal forecast contributed to the local hydrologic forecast skill. This forecast will permit probabilistic prediction of future hydrologic conditions. At the Florida site, we have also quantified the link between modeled WTD (i.e. drought) and the amplification and transmission of St. Louis Encephalitis virus (SLEV). We derive an empirical relationship between modeled land surface wetness and levels of SLEV transmission associated with human clinical cases. We then combine the seasonal forecasts of local, modeled WTD with this empirical relationship and produce retrospective probabilistic seasonal forecasts of epidemic SLEV transmission in Florida. Epidemic SLEV transmission forecast skill is demonstrated. These findings will permit real-time forecast of drought and resultant SLEV transmission in Florida.

Breeding-season food habits of burrowing owls (Athene cunicularia) in southwestern Dominican Republic

USGS Publications Warehouse

Wiley, J.W.

1998-01-01

Diet data from 20 Burrowing Owl (Athene cunicularia) nests were collected in southwestern Dominican Republic in 1976, 1982, and 1996. Invertebrates (53.3%) comprised the most numerous prey items (N = 396) delivered to nests by adult owls, but vertebrates (46.7%) were much better represented than in other studies of Burrowing Owl diet. Among vertebrates, birds (28.3% of all items) and reptiles (14.9%) were most important, whereas mammals (1.0%) and amphibians (2.5%) were less commonly delivered to nests. Vertebrates, however, comprised more than twice (69.2%) of the total biomass as invertebrates (30.8%), with birds (50.4%) and reptiles (12.8%) the most important of the vertebrate prey classes. A positive relationship was observed between bird species abundance and number of individuals taken as prey by Burrowing Owls.

Habitat and Burrow System Characteristics of the Blind Mole Rat Spalax galili in an Area of Supposed Sympatric Speciation

PubMed Central

Lövy, Matěj; Šklíba, Jan; Hrouzková, Ema; Dvořáková, Veronika; Nevo, Eviatar; Šumbera, Radim

2015-01-01

A costly search for food in subterranean rodents resulted in various adaptations improving their foraging success under given ecological conditions. In Spalax ehrenbergi superspecies, adaptations to local ecological conditions can promote speciation, which was recently supposed to occur even in sympatry at sites where two soil types of contrasting characteristics abut each other. Quantitative description of ecological conditions in such a site has been, nevertheless, missing. We measured characteristics of food supply and soil within 16 home ranges of blind mole rats Spalax galili in an area subdivided into two parts formed by basaltic soil and pale rendzina. We also mapped nine complete mole rat burrow systems to compare burrowing patterns between the soil types. Basaltic soil had a higher food supply and was harder than rendzina even under higher moisture content and lower bulk density. Population density of mole rats was five-times lower in rendzina, possibly due to the lower food supply and higher cover of Sarcopoterium shrubs which seem to be avoided by mole rats. A combination of food supply and soil parameters probably influences burrowing patterns resulting in shorter and more complex burrow systems in basaltic soil. PMID:26192762

Impact of Off-road Vehicles (ORVs) on Ghost Crabs of Sandy Beaches with Traffic Restrictions: A Case Study of Sodwana Bay, South Africa

NASA Astrophysics Data System (ADS)

Lucrezi, Serena; Saayman, Melville; van der Merwe, Peet

2014-03-01

Off-road vehicles (ORVs) are popular in coastal recreation, although they have negative impacts on sandy shores. In South Africa, ORVs are banned from most coastal areas, while some areas are designated for restricted ORV use, providing an opportunity to assess whether ORV traffic restrictions translate into biological returns. In Sodwana Bay, the impact of ORVs on ghost crab populations was investigated. During Easter 2012, ghost crab burrows were counted on beach sections open and closed to traffic. Burrow density in the Impact section was less than a third that of the Reference section, and by the end of the study burrow size in the Impact section was half that of the Reference section. ORV traffic caused a shift in burrow distribution to the Lower beach. However, differences in burrow densities between sections were 14 times smaller than differences obtained at a time when ORV use in Sodwana Bay was not controlled. While confirming the well-established detrimental effects of ORV use on sandy beach ecosystems, results demonstrated that traffic restrictions on beaches measurably minimize impacts to the fauna, thus translating into clear-cut biological returns.

Amyloid β Enhances Typical Rodent Behavior While It Impairs Contextual Memory Consolidation.

PubMed

Salgado-Puga, Karla; Prado-Alcalá, Roberto A; Peña-Ortega, Fernando

2015-01-01

Alzheimer's disease (AD) is associated with an early hippocampal dysfunction, which is likely induced by an increase in soluble amyloid beta peptide (Aβ). This hippocampal failure contributes to the initial memory deficits observed both in patients and in AD animal models and possibly to the deterioration in activities of daily living (ADL). One typical rodent behavior that has been proposed as a hippocampus-dependent assessment model of ADL in mice and rats is burrowing. Despite the fact that AD transgenic mice show some evidence of reduced burrowing, it has not been yet determined whether or not Aβ can affect this typical rodent behavior and whether this alteration correlates with the well-known Aβ-induced memory impairment. Thus, the purpose of this study was to test whether or not Aβ affects burrowing while inducing hippocampus-dependent memory impairment. Surprisingly, our results show that intrahippocampal application of Aβ increases burrowing while inducing memory impairment. We consider that this Aβ-induced increase in burrowing might be associated with a mild anxiety state, which was revealed by increased freezing behavior in the open field, and conclude that Aβ-induced hippocampal dysfunction is reflected in the impairment of ADL and memory, through mechanisms yet to be determined.

Domain-averaged snow depth over complex terrain from flat field measurements

NASA Astrophysics Data System (ADS)

Helbig, Nora; van Herwijnen, Alec

2017-04-01

Snow depth is an important parameter for a variety of coarse-scale models and applications, such as hydrological forecasting. Since high-resolution snow cover models are computational expensive, simplified snow models are often used. Ground measured snow depth at single stations provide a chance for snow depth data assimilation to improve coarse-scale model forecasts. Snow depth is however commonly recorded at so-called flat fields, often in large measurement networks. While these ground measurement networks provide a wealth of information, various studies questioned the representativity of such flat field snow depth measurements for the surrounding topography. We developed two parameterizations to compute domain-averaged snow depth for coarse model grid cells over complex topography using easy to derive topographic parameters. To derive the two parameterizations we performed a scale dependent analysis for domain sizes ranging from 50m to 3km using highly-resolved snow depth maps at the peak of winter from two distinct climatic regions in Switzerland and in the Spanish Pyrenees. The first, simpler parameterization uses a commonly applied linear lapse rate. For the second parameterization, we first removed the obvious elevation gradient in mean snow depth, which revealed an additional correlation with the subgrid sky view factor. We evaluated domain-averaged snow depth derived with both parameterizations using flat field measurements nearby with the domain-averaged highly-resolved snow depth. This revealed an overall improved performance for the parameterization combining a power law elevation trend scaled with the subgrid parameterized sky view factor. We therefore suggest the parameterization could be used to assimilate flat field snow depth into coarse-scale snow model frameworks in order to improve coarse-scale snow depth estimates over complex topography.

Concentrated evolutionary novelties in the foot musculature of Odontophrynidae (Anura: Neobatrachia), with comments on adaptations for burrowing.

PubMed

Blotto, Boris L; Pereyra, Martin O; Faivovich, Julián; Dias, Pedro Henrique Dos Santos; Grant, Taran

2017-05-02

We studied the foot musculature of the fossorial family Odontophrynidae (composed of the genera Macrogenioglottus, Odontophrynus, and Proceratophrys) plus several outgroup taxa from Hyloidea and other burrowing taxa from across Anura. We found novel character-states supporting the monophyly of Odontophrynus, Proceratophrys, and Odontophrynus + Macrogenioglottus. The character-states observed in O. cultripes support conflicting phylogenetic positions within Odontophrynus. A comparison of some novel character-states with a diverse sample of burrowing taxa suggests that some modifications of the foot musculature might be involved in digging.

Earthquake forecasting test for Kanto district to reduce vulnerability of urban mega earthquake disasters

NASA Astrophysics Data System (ADS)

Yokoi, S.; Tsuruoka, H.; Nanjo, K.; Hirata, N.

2012-12-01

Collaboratory for the Study of Earthquake Predictability (CSEP) is a global project on earthquake predictability research. The final goal of this project is to search for the intrinsic predictability of the earthquake rupture process through forecast testing experiments. The Earthquake Research Institute, the University of Tokyo joined CSEP and started the Japanese testing center called as CSEP-Japan. This testing center provides an open access to researchers contributing earthquake forecast models applied to Japan. Now more than 100 earthquake forecast models were submitted on the prospective experiment. The models are separated into 4 testing classes (1 day, 3 months, 1 year and 3 years) and 3 testing regions covering an area of Japan including sea area, Japanese mainland and Kanto district. We evaluate the performance of the models in the official suite of tests defined by CSEP. The total number of experiments was implemented for approximately 300 rounds. These results provide new knowledge concerning statistical forecasting models. We started a study for constructing a 3-dimensional earthquake forecasting model for Kanto district in Japan based on CSEP experiments under the Special Project for Reducing Vulnerability for Urban Mega Earthquake Disasters. Because seismicity of the area ranges from shallower part to a depth of 80 km due to subducting Philippine Sea plate and Pacific plate, we need to study effect of depth distribution. We will develop models for forecasting based on the results of 2-D modeling. We defined the 3D - forecasting area in the Kanto region with test classes of 1 day, 3 months, 1 year and 3 years, and magnitudes from 4.0 to 9.0 as in CSEP-Japan. In the first step of the study, we will install RI10K model (Nanjo, 2011) and the HISTETAS models (Ogata, 2011) to know if those models have good performance as in the 3 months 2-D CSEP-Japan experiments in the Kanto region before the 2011 Tohoku event (Yokoi et al., in preparation). We use CSEP-Japan experiments as a starting model of non-divided column in a depth. In the presentation, we will discuss the performance of the models comparing results of the Kanto district with those obtained in all over Japan by CSEP-Japan and also add to discuss the results of the 3-month experiments after the 2011 Tohoku earthquake to understand the learning ability of the models associated with recent seismicity of the area.

Estimating animal populations and body sizes from burrows: Marine ecologists have their heads buried in the sand

NASA Astrophysics Data System (ADS)

Schlacher, Thomas A.; Lucrezi, Serena; Peterson, Charles H.; Connolly, Rod M.; Olds, Andrew D.; Althaus, Franziska; Hyndes, Glenn A.; Maslo, Brooke; Gilby, Ben L.; Leon, Javier X.; Weston, Michael A.; Lastra, Mariano; Williams, Alan; Schoeman, David S.

2016-06-01

Most ecological studies require knowledge of animal abundance, but it can be challenging and destructive of habitat to obtain accurate density estimates for cryptic species, such as crustaceans that tunnel deeply into the seafloor, beaches, or mudflats. Such fossorial species are, however, widely used in environmental impact assessments, requiring sampling techniques that are reliable, efficient, and environmentally benign for these species and environments. Counting and measuring the entrances of burrows made by cryptic species is commonly employed to index population and body sizes of individuals. The fundamental premise is that burrow metrics consistently predict density and size. Here we review the evidence for this premise. We also review criteria for selecting among sampling methods: burrow counts, visual censuses, and physical collections. A simple 1:1 correspondence between the number of holes and population size cannot be assumed. Occupancy rates, indexed by the slope of regression models, vary widely between species and among sites for the same species. Thus, 'average' or 'typical' occupancy rates should not be extrapolated from site- or species specific field validations and then be used as conversion factors in other situations. Predictions of organism density made from burrow counts often have large uncertainty, being double to half of the predicted mean value. Whether such prediction uncertainty is 'acceptable' depends on investigators' judgements regarding the desired detectable effect sizes. Regression models predicting body size from burrow entrance dimensions are more precise, but parameter estimates of most models are specific to species and subject to site-to-site variation within species. These results emphasise the need to undertake thorough field validations of indirect census techniques that include tests of how sensitive predictive models are to changes in habitat conditions or human impacts. In addition, new technologies (e.g. drones, thermal-, acoustic- or chemical sensors) should be used to enhance visual census techniques of burrows and surface-active animals.

GENETIC CHARACTERIZATION OF A BURROWING SHRIMP (NEOTRYPAEA CALIFORNIENSIS)

EPA Science Inventory

Ghost shrimp, (Neotypaea californiensis) are burrowers, whose bioturbation and sediment destabilizations have a negative effect on mariculture of the commercially important oyster (Crassostrea gigas). Oyster farmers in Washington and Oregon estuaries have been poisoning these shr...

Activity and physiological significance of the pleopods in the respiration of Callianassa californiensis (Dana) (Crustacea: Thalassinidea).

PubMed

Torres, J J; Gluck, D L; Childress, J J

1977-02-01

1. The pleopods of C. californiensis, a potential site for extrabranchial oxygen exchange, do not contribute significantly to oxygen consumption. 2. C. californiensis has a gill surface area of 4.13 +/- 0.72 cm2/g wet body weight, the lowest value yet reported for a totally aquatic crustacean. 3. C. californiensis, when placed in simulated burrow conditions, regulates the PO2 very loosely in its immediate microhabitat, using its pleopods. 4. Field studies of pH and PO2 values in burrows of C. californiensis indicate that animal movement may play a large part in water exchange between the surface and burrow. 5. Activity studies suggest that oxygen is not critical to C. californiensis on a short term basis. Perception of oxygen after long deprivation may signal the possibility of renewed feeding and activity at the surface of its burrow.

Burrowing with a kinetic snout in a snake (Elapidae: Aspidelaps scutatus).

PubMed

Deufel, Alexandra

2017-12-01

Of the few elongate, fossorial vertebrates that have been examined for their burrowing mechanics, all were found to use an akinetic, reinforced skull to push into the soil, powered mostly by trunk muscles. Reinforced skulls were considered essential for head-first burrowing. In contrast, I found that the skull of the fossorial shield-nosed cobra (Aspidelaps scutatus) is not reinforced and retains the kinetic potential typical of many non-fossorial snakes. Aspidelaps scutatus burrows using a greatly enlarged rostral scale that is attached to a kinetic snout that is independently mobile with respect to the rest of the skull. Two mechanisms of burrowing are used: (1) anteriorly directed head thrusts from a loosely bent body that is anchored against the walls of the tunnel by friction, and (2) side-to-side shovelling using the head and rostral scale. The premaxilla, to which the rostral scale is attached, lacks any direct muscle attachments. Rostral scale movements are powered by, first, retractions of the palato-pterygoid bar, mediated by a ligament that connects the anterior end of the palatine to the transverse process of the premaxilla and, second, by contraction of a previously undescribed muscle slip of the m. retractor pterygoidei that inserts on the skin at the edge of the rostral scale. In derived snakes, palatomaxillary movements are highly conserved and power prey capture and transport behaviors. Aspidelaps scutatus has co-opted those mechanisms for the unrelated function of burrowing without compromising the original feeding functions, showing the potential for evolution of functional innovations in highly conserved systems. © 2017 Wiley Periodicals, Inc.

Burrow limitations and group living in the communally rearing rodent, Octodon degus

PubMed Central

Ebensperger, Luis A.; Chesh, Adrian S.; Castro, Rodrigo A.; Tolhuysen, Liliana Ortiz; Quirici, Verónica; Burger, Joseph Robert; Sobrero, Raúl; Hayes, Loren D.

2012-01-01

Group living is thought to evolve whenever individuals attain a net fitness advantage due to reduced predation risk or enhanced foraging efficiency, but also when individuals are forced to remain in groups, which often occurs during high-density conditions due to limitations of critical resources for independent breeding. The influence of ecological limitations on sociality has been studied little in species in which reproduction is more evenly shared among group members. Previous studies in the caviomorph rodent Octodon degus (a New World hystricognath) revealed no evidence that group living confers an advantage and suggest that burrow limitations influence formation of social groups. Our objective was to examine the relevance of ecological limitations on sociality in these rodents. Our 4-year study revealed no association between degu density and use of burrow systems. The frequency with which burrow systems were used by degus was not related to the quality of these structures; only in 1 of the 4 years did the frequency of burrow use decrease with decreasing abundance of food. Neither the number of females per group nor total group size (related measures of degu sociality) changed with yearly density of degus. Although the number of males within social groups was lower in 2008, this variation was not related clearly to varying density. The percentage of females in social groups that bred was close to 99% and did not change across years of varying density. Our results suggest that sociality in degus is not the consequence of burrow limitations during breeding. Whether habitat limitations contribute to variation in vertebrate social systems is discussed. PMID:22328789

Factors affecting detection of burrowing owl nests during standardized surveys

USGS Publications Warehouse

Conway, C.J.; Garcia, V.; Smith, M.D.; Hughes, K.

2008-01-01

Identifying causes of declines and evaluating effects of management practices on persistence of local populations of burrowing owls (Athene cunicularia) requires accurate estimates of abundance and population trends. Moreover, regulatory agencies in the United States and Canada typically require surveys to detect nest burrows prior to approving developments or other activities in areas that are potentially suitable for nesting burrowing owls. In general, guidelines on timing of surveys have been lacking and surveys have been conducted at different times of day and in different stages of the nesting cycle. We used logistic regression to evaluate 7 factors that could potentially affect probability of a surveyor detecting a burrowing owl nest. We conducted 1,444 detection trials at 323 burrowing owl nests within 3 study areas in Washington and Wyoming, USA, between February and August 2000-2002. Detection probability was highest during the nestling period and increased with ambient temperature. The other 5 factors that we examined (i.e., study area, time of day, timing within the breeding season, wind speed, % cloud cover) interacted with another factor to influence detection probability. Use of call-broadcast surveys increased detection probability, even during daylight hours when we detected >95% of owls visually. Optimal timing of surveys will vary due to differences in breeding phenology and differences in nesting behavior across populations. Nevertheless, we recommend ???3 surveys per year: one that coincides with the laying and incubation period, another that coincides with the early nestling period, and a third that coincides with the late nestling period. In northern latitudes, surveys can be conducted throughout the day.

Burrowing as a novel voluntary strength training method for mice: A comparison of various voluntary strength or resistance exercise methods.

PubMed

Roemers, P; Mazzola, P N; De Deyn, P P; Bossers, W J; van Heuvelen, M J G; van der Zee, E A

2018-04-15

Voluntary strength training methods for rodents are necessary to investigate the effects of strength training on cognition and the brain. However, few voluntary methods are available. The current study tested functional and muscular effects of two novel voluntary strength training methods, burrowing (digging a substrate out of a tube) and unloaded tower climbing, in male C57Bl6 mice. To compare these two novel methods with existing exercise methods, resistance running and (non-resistance) running were included. Motor coordination, grip strength and muscle fatigue were measured at baseline, halfway through and near the end of a fourteen week exercise intervention. Endurance was measured by an incremental treadmill test after twelve weeks. Both burrowing and resistance running improved forelimb grip strength as compared to controls. Running and resistance running increased endurance in the treadmill test and improved motor skills as measured by the balance beam test. Post-mortem tissue analyses revealed that running and resistance running induced Soleus muscle hypertrophy and reduced epididymal fat mass. Tower climbing elicited no functional or muscular changes. As a voluntary strength exercise method, burrowing avoids the confounding effects of stress and positive reinforcers elicited in forced strength exercise methods. Compared to voluntary resistance running, burrowing likely reduces the contribution of aerobic exercise components. Burrowing qualifies as a suitable voluntary strength training method in mice. Furthermore, resistance running shares features of strength training and endurance (aerobic) exercise and should be considered a multi-modal aerobic-strength exercise method in mice. Copyright © 2017 Elsevier B.V. All rights reserved.

Bioturbation and the role of microniches for sulfate reduction in coastal marine sediments.

PubMed

Bertics, Victoria J; Ziebis, Wiebke

2010-11-01

The effects of bioturbation in marine sediments are mainly associated with an increase in oxic and oxidized zones through an influx of oxygen-rich water deeper into the sediment and the rapid transport of particles between oxic and anoxic conditions. However, macrofaunal activity also can increase the occurrence of reduced microniches and anaerobic processes, such as sulfate reduction. Our goal was to determine the two-dimensional distribution of microniches associated with burrows of a ghost shrimp (Neotrypaea californiensis) and to determine microbial activities. In laboratory experiments, detailed measurements of sulfate reduction rates (SRR) were measured by injecting, in a 1 cm grid, radiolabelled sulfate directly into a narrow aquarium (40 cm × 30 cm × 3 cm) containing the complex burrow of an actively burrowing shrimp. Light-coloured oxidized burrow walls, along with black reduced microniches, were clearly visible through the aquarium walls. Direct injection of radiotracers allowed for whole-aquarium incubation to obtain two-dimensional documentation of sulfate reduction. Results indicated SRR were up to three orders of magnitude higher (140-790 nmol SO(4) (2-) cm(-3) day(-1) ) in reduced microniches associated with burrows when compared with the surrounding sediment. Additionally, some of the subsurface sulfate-reducing microniches associated with the burrow system appeared to be zones of dinitrogen fixation. Bioturbation may also lead to decreased sulfate reduction in other microniches and the sum of the activity in all microniches might not result in a total increase of sulfate reduction compared with non-bioturbated control sediments. © 2010 Society for Applied Microbiology and Blackwell Publishing Ltd.

Moving beyond the age-depth model paradigm in deep-sea palaeoclimate archives: dual radiocarbon and stable isotope analysis on single foraminifera

NASA Astrophysics Data System (ADS)

Lougheed, Bryan C.; Metcalfe, Brett; Ninnemann, Ulysses S.; Wacker, Lukas

2018-04-01

Late-glacial palaeoclimate reconstructions from deep-sea sediment archives provide valuable insight into past rapid changes in ocean chemistry. Unfortunately, only a small proportion of the ocean floor with sufficiently high sediment accumulation rate (SAR) is suitable for such reconstructions using the long-standing age-depth model approach. We employ ultra-small radiocarbon (14C) dating on single microscopic foraminifera to demonstrate that the long-standing age-depth model method conceals large age uncertainties caused by post-depositional sediment mixing, meaning that existing studies may underestimate total geochronological error. We find that the age-depth distribution of our 14C-dated single foraminifera is in good agreement with existing bioturbation models only after one takes the possibility of Zoophycos burrowing into account. To overcome the problems associated with the age-depth paradigm, we use the first ever dual 14C and stable isotope (δ18O and δ13C) analysis on single microscopic foraminifera to produce a palaeoclimate time series independent of the age-depth paradigm. This new state of the art essentially decouples single foraminifera from the age-depth paradigm to provide multiple floating, temporal snapshots of ocean chemistry, thus allowing for the successful extraction of temporally accurate palaeoclimate data from low-SAR deep-sea archives. This new method can address large geographical gaps in late-glacial benthic palaeoceanographic reconstructions by opening up vast areas of previously disregarded, low-SAR deep-sea archives to research, which will lead to an improved understanding of the global interaction between oceans and climate.

MAPPING BURROWING SHRIMP AND SEAGRASS IN YAQUINA ESTUARY

EPA Science Inventory

Burrowing shrimp and seagrasses create extensive intertidal and shallow subtidal habitats within Pacific NW estuaries. Maps of their populations are useful to inform estuarine managers of locations that deserve special consideration for conservation, and to inform oyster farmers...

Comparison of Satellite Observations of Aerosol Optical Depth to Surface Monitor Fine Particle Concentration

NASA Technical Reports Server (NTRS)

Kleb, Mary M.; AlSaadi, Jassim A.; Neil, Doreen O.; Pierce, Robert B.; Pippin, Margartet R.; Roell, Marilee M.; Kittaka, Chieko; Szykman, James J.

2004-01-01

Under NASA's Earth Science Applications Program, the Infusing satellite Data into Environmental Applications (IDEA) project examined the relationship between satellite observations and surface monitors of air pollutants to facilitate a more capable and integrated observing network. This report provides a comparison of satellite aerosol optical depth to surface monitor fine particle concentration observations for the month of September 2003 at more than 300 individual locations in the continental US. During September 2003, IDEA provided prototype, near real-time data-fusion products to the Environmental Protection Agency (EPA) directed toward improving the accuracy of EPA s next-day Air Quality Index (AQI) forecasts. Researchers from NASA Langley Research Center and EPA used data from the Moderate Resolution Imaging Spectroradiometer (MODIS) instrument combined with EPA ground network data to create a NASA-data-enhanced Forecast Tool. Air quality forecasters used this tool to prepare their forecasts of particle pollution, or particulate matter less than 2.5 microns in diameter (PM2.5), for the next-day AQI. The archived data provide a rich resource for further studies and analysis. The IDEA project uses data sets and models developed for tropospheric chemistry research to assist federal, state, and local agencies in making decisions concerning air quality management to protect public health.

Evaluation of a new microphysical aerosol module in the ECMWF Integrated Forecasting System

NASA Astrophysics Data System (ADS)

Woodhouse, Matthew; Mann, Graham; Carslaw, Ken; Morcrette, Jean-Jacques; Schulz, Michael; Kinne, Stefan; Boucher, Olivier

2013-04-01

The Monitoring Atmospheric Composition and Climate II (MACC-II) project will provide a system for monitoring and predicting atmospheric composition. As part of the first phase of MACC, the GLOMAP-mode microphysical aerosol scheme (Mann et al., 2010, GMD) was incorporated within the ECMWF Integrated Forecasting System (IFS). The two-moment modal GLOMAP-mode scheme includes new particle formation, condensation, coagulation, cloud-processing, and wet and dry deposition. GLOMAP-mode is already incorporated as a module within the TOMCAT chemistry transport model and within the UK Met Office HadGEM3 general circulation model. The microphysical, process-based GLOMAP-mode scheme allows an improved representation of aerosol size and composition and can simulate aerosol evolution in the troposphere and stratosphere. The new aerosol forecasting and re-analysis system (known as IFS-GLOMAP) will also provide improved boundary conditions for regional air quality forecasts, and will benefit from assimilation of observed aerosol optical depths in near real time. Presented here is an evaluation of the performance of the IFS-GLOMAP system in comparison to in situ aerosol mass and number measurements, and remotely-sensed aerosol optical depth measurements. Future development will provide a fully-coupled chemistry-aerosol scheme, and the capability to resolve nitrate aerosol.

Mortality of Western Burrowing Owls ( Athene cunicularia hypugaea) Associated with Brodifacoum Exposure.

PubMed

Justice-Allen, Anne; Loyd, Kerrie Anne

2017-01-01

Western Burrowing Owls ( Athene cunicularia hypugaea) frequently occupy periurban areas, where they may be exposed to pest control agents. This short communication describes necropsy findings and detected brodifacoum rodenticide levels for four Western Burrowing Owls in Lake Havasu City, Arizona, US, 2013-15. Levels detected ranged from 0.077 mg/kg to 0.497 mg/kg. Brodifacoum, one of several second-generation anticoagulant rodenticides recently removed from the general consumer market, is still available for use by licensed pesticide applicators. Despite recent regulatory actions, second-generation anticoagulant pesticides continue to threaten predatory species in periurban areas.

Partitioning of habitable pore space in earthworm burrows.

PubMed

Gorres, Josef H; Amador, Jose A

2010-03-01

Earthworms affect macro-pore structure of soils. However, some studies suggest that earthworm burrow walls and casts themselves differ greatly in structure from surrounding soils, potentially creating habitat for microbivorours nematodes which accelerate the decomposition and C and N mineralization. In this study aggregates were sampled from the burrow walls of the anecic earthworm Lumbricus terrestris and bulk soil (not altered by earthworms) from mesocosm incubated in the lab for 0, 1, 3, 5 and 16 weeks. Pore volumes and pore sizes were measured in triplicate with Mercury Intrusion Porosimetry (MIP). This method is well suited to establish pore size structure in the context of habitat, because it measures the stepwise intrusion of mercury from the outside of the aggregate into ever smaller pores. The progress of mercury into the aggregate interior thus resembles potential paths of a nematode into accessible habitable pore spaces residing in an aggregate. Total specific pore volume, V(s), varied between 0.13 and 0.18 mL/g and increased from 3 to 16 weeks in both burrow and bulk soil. Differences between total V(s) of bulk and burrow samples were not significant on any sampling date. However, differences were significant for pore size fractions at the scale of nematode body diameter.

Partitioning of habitable pore space in earthworm burrows

PubMed Central

Amador, Jose A.

2010-01-01

Earthworms affect macro-pore structure of soils. However, some studies suggest that earthworm burrow walls and casts themselves differ greatly in structure from surrounding soils, potentially creating habitat for microbivorours nematodes which accelerate the decomposition and C and N mineralization. In this study aggregates were sampled from the burrow walls of the anecic earthworm Lumbricus terrestris and bulk soil (not altered by earthworms) from mesocosm incubated in the lab for 0, 1, 3, 5 and 16 weeks. Pore volumes and pore sizes were measured in triplicate with Mercury Intrusion Porosimetry (MIP). This method is well suited to establish pore size structure in the context of habitat, because it measures the stepwise intrusion of mercury from the outside of the aggregate into ever smaller pores. The progress of mercury into the aggregate interior thus resembles potential paths of a nematode into accessible habitable pore spaces residing in an aggregate. Total specific pore volume, Vs, varied between 0.13 and 0.18 mL/g and increased from 3 to 16 weeks in both burrow and bulk soil. Differences between total Vs of bulk and burrow samples were not significant on any sampling date. However, differences were significant for pore size fractions at the scale of nematode body diameter. PMID:22736839

{sup 210}Pb chronology of sequences affected by burrow excavation and infilling: Examples from shallow marine carbonate sediment sequences, Holocene South Florida and Caicos Platform, British West Indies

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tedesco, L.P.; Aller, R.C.

A variety of sedimentological criteria and direct field observations indicate that deposits of shallow carbonate platforms and mud banks are extensively transformed during megafaunal bioturbation by deep-burrowing crustaceans. {sup 210}Pb dating of surficial sediment and burrow fills dissected from the upper 1--3 m of sediments at four sites on the Caicos Platform and in South Florida corroborates sedimentologic descriptions of rapid biogenic alteration of entire facies. {sup 210}Pb distributions from the study sites show that at least some infill is predominantly surficial sediment. Assuming that all identifiable deep burrow fills containing excess {sup 210}Pb derive from the uppermost 0--5 cmmore » interval, an estimate of facies replacement by nonlocal transport can be made based on measured excess {sup 210}Pb values of fill and the corresponding total discernible fill volume in cores. Calculations indicate that at the sites studied, burrow excavation and infilling can completely transform the upper 1--2 m, and possibly 3.5 m, of deposits in 100--600 yr. More rapid transformation of deposits is required if fill is derived from below 5 cm. Biogenic transformation rates are sufficiently fast compared to net sedimentation that burrow infills, not primarily physical deposition, determine the composition, porosity, fabric, and texture of the preserved facies. The {sup 210}Pb profiles in the deepest regions of deposits in the present cases are further complicated by basal enrichments of {sup 226}Ra, which apparently diffuses upwards from Pleistocene calcrete surfaces into overlying Holocene sediment. This diffusion requires careful documentation of supported {sup 210}Pb near this contact, but also offers the potential for an additional transport tracer internal to the deposits.« less

Trace fossils and paleoenvironments of lower and middle Austin Chalk (upper Cretaceous), north-central Texas

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dawson, W.C.; Reaser, D.F.

Outcrops of lower and middle Austin Chalk in the vicinity of Cedar Hill and Waxahachie, Texas (designated site of the Superconducting Super Collider), are profusely bioturbated. The lower Austin (Coniacian) disconformably overlies the Eagle Ford Shale (Turonian) and consists of about 60 m of medium- to thick-bedded indurated chalk with thin intervening marls. The middle Austin (Santonian) is composed of about 65 m of thick-bedded marl containing thin beds of argillaceous chalk. Both chalk and marl units are moderately to intensely bioturbated. However, ichnofossils are more conspicuous in chalks where multiple episodes of burrowing are recognizable. Early formed burrows (indistinctmore » mottles) represent the initial softground Austin substrate. Later generations of well-preserved burrows record a post-compaction (dewatered) firmground substrate. No hardgrounds have been recognized. The abundance and diversity of ichnofossils in Austin strata are in marked contrast to the paucity of other megafauna, except large inoceramids. Planolites, Teichichnus, Thalassinoides, and Chondrites are the predominant ichnogenera in the lower Austin; these forms are superimposed on a background of nondiagnostic, irregularly shaped mottles. Some strata contain well-preserved J-, S-, T-, U-, Y-, and X-shaped traces having menicus fillings. These subhorizontal, endogenic, full-relief burrows are typically infilled with dark gray (pyritic) chalk. Locally, pyrite or Fe-oxide-filled vertical tubes are preserved. Many traces have been deformed by compaction. The middle Austin contains Planolites, Chondrites, Thalassinoides, Pseudobilobites, and both small- and large-diameter, sinuous, horizontal burrows. These ichnofossils are infilled with chalk or comminuted shells and are more resistant to weathering than the surrounding middle Austin marl. Intensely burrowed horizons occur in association with distinctive Fe-stained chalk beds.« less

Silurian trace fossils in carbonate turbidites from the Alexander Arc of southeastern Alaska

DOE Office of Scientific and Technical Information (OSTI.GOV)

Soja, C.M.

Early to Late Silurian (Wenlock-Ludlow) body and trace fossils from the Heceta Formation are preserved in the oldest widespread carbonates in the Alexander terrane of southeastern Alaska. They represent the earliest shelly benthos to inhabit a diversity of marine environments and are important indicators of the early stages in benthic community development within this ancient island arc. The trace fossils are significant because they add to a small but growing body of knowledge about ichnofaunas in deep-water Paleozoic carbonates. Proximal to medial carbonate turbidites yield a low-diversity suite of trace fossils that comprises five distinct types of biogenic structures. Beddingmore » planes reveal simple epichnial burrows (Planolites), cross-cutting burrows (Fucusopsis), and tiny cylindrical burrows. These and other casts, including chondrites( )-like burrow clusters, represent the feeding activities (fodinichnia) of preturbidite animals. Hypichnial burrows and rare endichnial traces reflect the activities of postturbidite animals. Broken and offset traces indicate that infaunal biota commenced burrowing before slumping and subsequent soft-sediment deformation. The abundance and density of trace fossils increases offshore in the medial turbidites associated with a decrease in the size and amount of coarse particles and with an increase in mud and preserved organic material. Although diversity levels are similar in the proximal and medial turbidite facies, they are much lower than in Paleozoic siliciclastic turbidites. This may reflect unfavorable environmental conditions for infaunal biota or paleobiogeographic isolation of the Alexander terrane during the Silurian. A greater use of trace fossils in terrane analysis will help to resolve this issue and should provide new data for reconstructing the paleogeography of circum-Pacific terranes.« less

Differential behavioural and endocrine responses of common voles (Microtus arvalis) to nest predators and resource competitors.

PubMed

Liesenjohann, Monique; Liesenjohann, Thilo; Palme, Rupert; Eccard, Jana Anja

2013-09-08

Adaptive behavioural strategies promoting co-occurrence of competing species are known to result from a sympatric evolutionary past. Strategies should be different for indirect resource competition (exploitation, e.g., foraging and avoidance behaviour) than for direct interspecific interference (e.g., aggression, vigilance, and nest guarding). We studied the effects of resource competition and nest predation in sympatric small mammal species using semi-fossorial voles and shrews, which prey on vole offspring during their sensitive nestling phase. Experiments were conducted in caged outdoor enclosures. Focus common vole mothers (Microtus arvalis) were either caged with a greater white-toothed shrew (Crocidura russula) as a potential nest predator, with an herbivorous field vole (Microtus agrestis) as a heterospecific resource competitor, or with a conspecific resource competitor. We studied behavioural adaptations of vole mothers during pregnancy, parturition, and early lactation, specifically modifications of the burrow architecture and activity at burrow entrances. Further, we measured pre- and postpartum faecal corticosterone metabolites (FCMs) of mothers to test for elevated stress hormone levels. Only in the presence of the nest predator were prepartum FCMs elevated, but we found no loss of vole nestlings and no differences in nestling body weight in the presence of the nest predator or the heterospecific resource competitor. Although the presence of both the shrew and the field vole induced prepartum modifications to the burrow architecture, only nest predators caused an increase in vigilance time at burrow entrances during the sensitive nestling phase. Voles displayed an adequate behavioural response for both resource competitors and nest predators. They modified burrow architecture to improve nest guarding and increased their vigilance at burrow entrances to enhance offspring survival chances. Our study revealed differential behavioural adaptations to resource competitors and nest predators.

Differential behavioural and endocrine responses of common voles (Microtus arvalis) to nest predators and resource competitors

PubMed Central

2013-01-01

Background Adaptive behavioural strategies promoting co-occurrence of competing species are known to result from a sympatric evolutionary past. Strategies should be different for indirect resource competition (exploitation, e.g., foraging and avoidance behaviour) than for direct interspecific interference (e.g., aggression, vigilance, and nest guarding). We studied the effects of resource competition and nest predation in sympatric small mammal species using semi-fossorial voles and shrews, which prey on vole offspring during their sensitive nestling phase. Experiments were conducted in caged outdoor enclosures. Focus common vole mothers (Microtus arvalis) were either caged with a greater white-toothed shrew (Crocidura russula) as a potential nest predator, with an herbivorous field vole (Microtus agrestis) as a heterospecific resource competitor, or with a conspecific resource competitor. Results We studied behavioural adaptations of vole mothers during pregnancy, parturition, and early lactation, specifically modifications of the burrow architecture and activity at burrow entrances. Further, we measured pre- and postpartum faecal corticosterone metabolites (FCMs) of mothers to test for elevated stress hormone levels. Only in the presence of the nest predator were prepartum FCMs elevated, but we found no loss of vole nestlings and no differences in nestling body weight in the presence of the nest predator or the heterospecific resource competitor. Although the presence of both the shrew and the field vole induced prepartum modifications to the burrow architecture, only nest predators caused an increase in vigilance time at burrow entrances during the sensitive nestling phase. Conclusion Voles displayed an adequate behavioural response for both resource competitors and nest predators. They modified burrow architecture to improve nest guarding and increased their vigilance at burrow entrances to enhance offspring survival chances. Our study revealed differential behavioural adaptations to resource competitors and nest predators. PMID:24010574

Faunal Burrows Alter the Diversity, Abundance, and Structure of AOA, AOB, Anammox and n-Damo Communities in Coastal Mangrove Sediments.

PubMed

Chen, Jing; Gu, Ji-Dong

2017-07-01

In the present work, the diversity, community structures, and abundances of aerobic ammonia-oxidizing archaea (AOA) and bacteria (AOB), anaerobic ammonium-oxidizing (anammox) bacteria, and denitrifying anaerobic methane oxidization (n-damo) bacteria were unraveled in the bioturbated areas of the coastal Mai Po mangrove sediments. Results indicated that the bioturbation by burrowing in mangrove sediments was associated with higher concentration of NH 4 + but lower concentrations of both NO 2 - and NO 3 - , and increase in diversity and richness of both AOA and AOB, but relatively lower diversity and richness of n-damo bacteria. The phylotypes of anammox bacterial community were significantly increased while their phylogenetic lineages observed in the less bioturbated areas were also maintained. Infauna also showed a great impact on the composition of n-damo bacterial phylotypes and burrowing activity altered the n-damo community structure profoundly in the sampled areas. The communities of n-damo bacteria in the surrounding bulk sediments showed similar structures to marine n-damo communities, but those on the burrow wall and in the ambient surface layer had a freshwater pattern, which was different from previous findings in Mai Po wetland. On the other hand, the abundances of AOA, AOB, and n-damo bacteria were greatly stimulated on burrow walls while the abundance of anammox bacteria remained unchanged. Infaunal burrows and mangrove roots affected the relative abundance of AOA and AOB. The benthic infauna stimulated the abundances of AOA, AOB, anammox, and n-damo bacteria. Furthermore, NH 4 + and NO 2 - were important environmental factors changing the structure of each group. The communities of anammox and n-damo bacteria in bioturbated areas showed a competitive relationship.

The effect of mayfly (Hexagenia spp.) burrowing activity on sediment oxygen demand in western Lake Erie

USGS Publications Warehouse

Edwards, William J.; Soster, Frederick M.; Matisoff, Gerald; Schloesser, Donald W.

2009-01-01

Previous studies support the hypothesis that large numbers of infaunal burrow-irrigating organisms in the western basin of Lake Erie may increase significantly the sediment oxygen demand, thus enhancing the rate of hypolimnetic oxygen depletion. We conducted laboratory experiments to quantify burrow oxygen dynamics and increased oxygen demand resulting from burrow irrigation using two different year classes of Hexagenia spp. nymphs from western Lake Erie during summer, 2006. Using oxygen microelectrodes and hot film anemometry, we simultaneously determined oxygen concentrations and burrow water flow velocities. Burrow oxygen depletion rates ranged from 21.7 mg/nymph/mo for 15 mm nymphs at 23 °C to 240.7 mg/nymph/mo for 23 mm nymphs at 13 °C. Sealed microcosm experiments demonstrated that mayflies increase the rate of oxygen depletion by 2-5 times that of controls, depending on size of nymph and water temperature, with colder waters having greater impact. At natural population densities, nymph pumping activity increased total sediment oxygen demand 0.3-2.5 times compared to sediments with no mayflies and accounted for 22-71% of the total sediment oxygen demand. Extrapolating laboratory results to the natural system suggest that Hexagenia spp. populations may exert a significant control on oxygen depletion during intermittent stratification. This finding may help explain some of the fluctuations in Hexagenia spp. population densities in western Lake Erie and suggests that mayflies, by causing their own population collapse irrespective of other environmental conditions, may need longer term averages when used as a bio-indicator of the success of pollution-abatement programs in western Lake Erie and possibly throughout the Great Lakes.

Seasonal shifts in shelter and microhabitat use of drymarchon couperi (eastern indigo snake) in Georgia

USGS Publications Warehouse

Hyslop, N.L.; Cooper, R.J.; Meyers, J.M.

2009-01-01

Drymarchon couperi (Eastern Indigo Snake), a threatened species of the southeastern Coastal Plain of the United States, has experienced population declines because of extensive habitat loss and degradation across its range. In Georgia and northern Florida, the species is associated with longleaf pine habitats that support Gopherus polyphemus (Gopher Tortoise) populations, the burrows of which D. couperi uses for shelter. The extent that D. couperi uses these burrows, in addition to the use of other underground shelters and the microhabitat features associated with these structures is largely unknown. From 2003 through 2004, we conducted a radiotelemetry study of D. couperi (n = 32) to examine use of shelters and microhabitat in Georgia. We used repeated measures regression on a candidate set of models created from a priori hypotheses using principal component scores, derived from analysis of microhabitat data to examine microhabitat use at underground shelters. Proportion of locations recorded underground did not differ seasonally or between sexes. In winter, we recorded >0.90 of underground locations at tortoise burrows. Use of these burrows was less pronounced in spring for males. Females used abandoned tortoise burrows more frequently than males year-round and used them on approximately 0.60 of their underground locations during spring. Microhabitat use at underground shelters was most influenced by season compared to sex, site, or body size. Females in spring and summer used more open microhabitat compared to males, potentially in response to gestation. Our results suggest that the availability of suitable underground shelters, especially G. polyphemus burrows, may be a limiting factor in the northern range of D. couperi, with important implications for its conservation. ?? 2009 by the American Society of Ichthyologists and Herpetologists.

Developing a Model for Predicting Snowpack Parameters Affecting Vehicle Mobility,

DTIC Science & Technology

1983-05-01

Service River Forecast System -Snow accumulation and JO ablation model. NOAA Technical Memorandum NWS HYDRO-17, National Weather Service, JS Silver Spring... Forecast System . This model indexes each phys- ical process that occurs in the snowpack to the air temperature. Although this results in a signifi...pressure P Probability Q Energy Q Specific humidity R Precipitation s Snowfall depth T Air temperature t Time U Wind speed V Water vapor

Report on the Western Burrowing Owl (Speotyto cunicularia) conservation workshop

Treesearch

Geoffrey L. Holroyd; Troy I. Wellicome

1997-01-01

This workshop was convened to review the current status of the Western Burrowing Owl (Speotyto cunicularia hypugaea) in North America, to discuss means by which we can improve our knowledge of this owl, and to initiate conservation action to benefit the species.

Genetic characterization of the burrowing shrimp (Neotrypaea californiensis) in Washington and Oregon estuaries

EPA Science Inventory

The Ghost shrimp, (Neotrypaea californiensis) are burrowers, which have a wide demographic distribution along the United States Pacific Coast. Our study used genetic analysis to estimate the source populations of larvae recruiting into estuaries to allow a greater understanding ...

RESPONSE OF GHOST SHRIMP (NEOTRYPAEA CALIFORNIENSIS) BIOTURBATION TO ORGANIC MATTER ENRICHMENT OF ESTUARINE INTERTIDAL SEDIMENTS

EPA Science Inventory

Populations of burrowing shrimp (Neotrypaea californiensis and Upogebia p;ugettensis) are the dominant invertebrate fauna on Pacific estuarine tide flats, occupying >80% of intertidal area in some estuaries. Burrowing shrimp are renowned for their bioturbation of intertidal sedi...

Burrowing shrimp as foundation species in NE Pacific estuaries

EPA Science Inventory

My talk will be about the my research to characterize the role that burrowing shrimp play as foundation/engineering species in Pacific NW estuaries. My research has focused on measuring the abundance & distribution of two species (ghost shrimp & mud shrimp) at ecosystem scales, ...

Characteristics of roost sites used by burrowing owls (Athene cunicularia) wintering in Southern Texas

USGS Publications Warehouse

Williford, D.L.; Woodin, M.C.; Skoruppa, M.K.; Hickman, G.C.

2007-01-01

The western burrowing owl (Athene cunicularia hypugaea) is threatened in Mexico, endangered in Canada, and declining in most of the western United States. Most previous research has focused on burrowing owl breeding biology, and little is known about its winter ecology. We determined characteristics of roost sites used by western burrowing owls in southern Texas during winter. Data on 46 winter roost sites were collected from 15 November 2001 to 15 February 2002. Of these roost sites, 87% were located on agricultural land, 80% were along roads, and 74% were concrete, steel, or cast-iron culverts. Mean diameter (??SE) of roost site openings was 22 ?? 1.5 cm. Most roost sites (70%) were located on inaccessible private lands. Bare ground comprised 61% of ground cover within a 10-m radius of roost sites. We recommend that landowners and public-land managers should be encouraged to use smaller-diameter culverts when building roads or replacing old or damaged culverts and to graze livestock or mow around these culverts during winter.

Evidence of marine debris usage by the ghost crab Ocypode quadrata (Fabricius, 1787).

PubMed

Costa, Leonardo Lopes; Rangel, Danilo Freitas; Zalmon, Ilana Rosental

2018-03-01

Sandy beaches are sites of marine debris stranding, but the interaction of beach biota with waste is poorly studied. The objective of this study was to investigate whether the ghost crab Ocypode quadrata selects marine debris by types using a non-destructive method on sandy beaches of Southeastern Brazil. We found marine debris in 7% of 1696 surveyed burrows, and the ghost crabs selectivity was mainly by soft plastic (30%), straw (11%), rope (6%) and foam (4%). Burrows with marine debris showed higher occupation rate (~68%) compared to burrows without debris (~28%), indicating that these materials may increase the capacity of ghost crabs to memorize their burrows placement (homing). The percentage of marine debris was not always related to their amount in the drift line, but ghost crabs used more debris near urbanized areas. Future studies should test whether ghost crabs are using marine debris for feeding, homing or other mechanisms. Copyright © 2018 Elsevier Ltd. All rights reserved.

Probabilistic model predicts dynamics of vegetation biomass in a desert ecosystem in NW China

PubMed Central

Wang, Xin-ping; Schaffer, Benjamin Eli; Yang, Zhenlei; Rodriguez-Iturbe, Ignacio

2017-01-01

The temporal dynamics of vegetation biomass are of key importance for evaluating the sustainability of arid and semiarid ecosystems. In these ecosystems, biomass and soil moisture are coupled stochastic variables externally driven, mainly, by the rainfall dynamics. Based on long-term field observations in northwestern (NW) China, we test a recently developed analytical scheme for the description of the leaf biomass dynamics undergoing seasonal cycles with different rainfall characteristics. The probabilistic characterization of such dynamics agrees remarkably well with the field measurements, providing a tool to forecast the changes to be expected in biomass for arid and semiarid ecosystems under climate change conditions. These changes will depend—for each season—on the forecasted rate of rainy days, mean depth of rain in a rainy day, and duration of the season. For the site in NW China, the current scenario of an increase of 10% in rate of rainy days, 10% in mean rain depth in a rainy day, and no change in the season duration leads to forecasted increases in mean leaf biomass near 25% in both seasons. PMID:28584097

Flood forecasting within urban drainage systems using NARX neural network.

PubMed

Abou Rjeily, Yves; Abbas, Oras; Sadek, Marwan; Shahrour, Isam; Hage Chehade, Fadi

2017-11-01

Urbanization activity and climate change increase the runoff volumes, and consequently the surcharge of the urban drainage systems (UDS). In addition, age and structural failures of these utilities limit their capacities, and thus generate hydraulic operation shortages, leading to flooding events. The large increase in floods within urban areas requires rapid actions from the UDS operators. The proactivity in taking the appropriate actions is a key element in applying efficient management and flood mitigation. Therefore, this work focuses on developing a flooding forecast system (FFS), able to alert in advance the UDS managers for possible flooding. For a forecasted storm event, a quick estimation of the water depth variation within critical manholes allows a reliable evaluation of the flood risk. The Nonlinear Auto Regressive with eXogenous inputs (NARX) neural network was chosen to develop the FFS as due to its calculation nature it is capable of relating water depth variation in manholes to rainfall intensities. The campus of the University of Lille is used as an experimental site to test and evaluate the FFS proposed in this paper.

Occurrence of west nile virus infection in raptors at the Salton Sea, California.

PubMed

Dusek, Robert J; Iko, William M; Hofmeister, Erik K

2010-07-01

We investigated the prevalence of West Nile virus (WNV)-neutralizing antibodies and infectious virus, and the occurrence of overwinter transmission in two raptor species during January and March 2006 at the Salton Sea, Imperial County, California. We captured 208 American Kestrels (Falco sparverius) (January, n=100; March, n=108) and 116 Burrowing Owls (Athene cunicularia) (January, n=52; March, n=64). Laboratory analysis revealed that 83% of American Kestrels and 31% of Burrowing Owls were positive for WNV-neutralizing antibodies. Additionally, two seroconversions were detected in Burrowing Owls between January and March. Infectious WNV, consistent with acute infection, was not detected in any bird.

SEASONAL FORAGING BY CHANNEL CATFISH ON TERRESTRIALLY BURROWING CRAYFISH IN A FLOODPLAIN-RIVER ECOSYSTEM

EPA Science Inventory

The seasonal use of terrestrially burrowing crayfish as a food item by channel catfish Ictalurus punctatus was studied in channelized and non-channelized sections of the Yockanookany River (Mississippi, USA). During seasonal inundation of the floodplains, the crayfish occupied o...

Burrowing and foraging activity of marsh crabs under different inundation regimes

EPA Science Inventory

New England salt marshes are susceptible to degradation and habitat loss as a result of increased periods of inundation as sea levels rise. Increased inundation may exacerbate marsh degradation that can result from crab burrowing and foraging. Most studies to date have focused on...

Burrowing mayflies (Hexagenia) as indicators of ecosystem health at Sleeping Bear Dunes National Lakeshore, Michigan

USGS Publications Warehouse

Edsall, Thomas A.; Phillips, William E.

2004-01-01

The present study describes the provisional use of burrowing mayflies (Hexagenia [Ephemeroptera: Ephemeridae]) as an indicator organism to assess and monitor the health of the Loon Lake and lower Platte River ecosystem within Sleeping Bear Dunes National Lakeshore, Michigan.

LINKING HABITAT CHANGE AND NUTRIENT DYNAMICS: COMPARISON OF FOOD WEBS AND NITROGEN FLUXES IN BURROWING SHRIMP- AND OYSTER-DOMINATED HABITATS

EPA Science Inventory

Endemic thalassinid burrowing shrimps are simultaneously dominant ecosystem engineering species and economic pests within Pacific estuaries. Dense populations of two shrimps (Neotrypaea californiensis and Upogebia pugettensis) commonly occupy >75% of intertidal and shallow subti...

MORE THAN JUST BAIT: BURROWING SHRIMP AS ECOSYSTEM ENGINEERS IN OREGON ESTUARIES - SEPTEMBER 2006

EPA Science Inventory

Burrowing shrimp may be most widely known as excellent fishing bait, but they also play important roles in estuaries of the Pacific Northwest. These shrimps strongly affect carbon and nutrient cycling, phytoplankton abundance, food web structure and dynamics, sediment stability,...

Distributional changes in the western Burrowing Owl (Athene cunicularia hypugaea) in North America from 1967 to 2008

USGS Publications Warehouse

Macias-Duarte, Alberto; Conway, Courtney J.

2015-01-01

The quantification of shifts in bird distributions in response to climate change provides an opportunity to gain a deeper understanding of the processes that influence species persistence. We used data from the North American Breeding Bird Survey (BBS) to document changes in the distributional limits of the western Burrowing Owl (Athene cunicularia hypugaea) from 1967 to 2008. We used logistic regression to model presence probability (p) as a function of longitude, latitude, and year. We modeled a linear trend in logit(p) through time with slope and intercept modeled as a double Fourier series of longitude and latitude. We found that the western Burrowing Owl has experienced an intriguing southward shift in the northern half of its breeding range, contrary to what is predicted by most species niche models and what has been observed for many other species in North America. The breeding range of the Burrowing Owl has been shrinking near its northern, western, and eastern edges. Our model detected the population declines that were observed in California and eastern Washington, in locations where maps based on route-specific estimating equations had predicted significant population increases. We suggest that the northern boundary of the breeding distribution of the western Burrowing Owl has contracted southward and the southern boundary of the species' breeding distribution has expanded southward into areas of northern Mexico that were formerly used only by wintering migrants.

Modeling seasonal detection patterns for burrowing owl surveys

Treesearch

Quresh S. Latif; Kathleen D. Fleming; Cameron Barrows; John T. Rotenberry

2012-01-01

To guide monitoring of burrowing owls (Athene cunicularia) in the Coachella Valley, California, USA, we analyzed survey-method-specific seasonal variation in detectability. Point-based call-broadcast surveys yielded high early season detectability that then declined through time, whereas detectability on driving surveys increased through the season. Point surveys...

Enhanced Resources of the SMDC Monitoring Research Program for Source Information and Data Acquisition

DTIC Science & Technology

2007-09-01

Springer locations (red) with satellite imagery illustrating roundoff error in Springer locations (b). Comparison of Rainier Mesa tunnel location of...Burrows et al.; Bolt; IAEA South Pacific Burrows et al.; Bolt; IAEA; AWE India Pokhran Gupta/Pabian; Norris/Arkin North Korea Mount Mantap Richards

Strong population genetic structure and larval dispersal capability of the burrowing ghost shrimp (Neotrypaea californiensis)

EPA Science Inventory

The burrowing ghost shrimp, Neotrypaea californiensis, is a vital member of the estuarine benthic community. Dense populations of shrimp are found in the major estuaries of Washington and Oregon. Our study determines the genetic structure of shrimp populations in order to gain ...

Gopherus agassizii (desert tortoise) and Crotalus ruber (red diamond rattlesnake). Burrow co-occupancy

USGS Publications Warehouse

Lovich, Jeffrey E.

2011-01-01

I observed an adult Desert Tortoise and an adult Red Diamond Rattlesnake (sexes unknown) in a shallow tortoise burrow on 6 January 1997 at a wind energy generation facility near Palm Springs, Riverside Co., California, USA (33.9599°N, 116.6613°W).

Effects of Hypoxia on Animal Burrow Constraction and Consequent Effects on Sediment Redox Profiles (SETAC08)

EPA Science Inventory

We investigated the effects of mild hypoxia on the burrowing behavior of three marine species (the hard clam Mercenaria mercenaria, the polychaete worm Nereis virens, and the amphipod Leptocheirus plumulosus) and consequent effects on sediment redox profiles. Animals were introdu...

NSF's Perspective on Space Weather Research for Building Forecasting Capabilities

NASA Astrophysics Data System (ADS)

Bisi, M. M.; Pulkkinen, A. A.; Bisi, M. M.; Pulkkinen, A. A.; Webb, D. F.; Oughton, E. J.; Azeem, S. I.

2017-12-01

Space weather research at the National Science Foundation (NSF) is focused on scientific discovery and on deepening knowledge of the Sun-Geospace system. The process of maturation of knowledge base is a requirement for the development of improved space weather forecast models and for the accurate assessment of potential mitigation strategies. Progress in space weather forecasting requires advancing in-depth understanding of the underlying physical processes, developing better instrumentation and measurement techniques, and capturing the advancements in understanding in large-scale physics based models that span the entire chain of events from the Sun to the Earth. This presentation will provide an overview of current and planned programs pertaining to space weather research at NSF and discuss the recommendations of the Geospace Section portfolio review panel within the context of space weather forecasting capabilities.

Cascading effects of predator-detritivore interactions depend on environmental context in a Tibetan alpine meadow.

PubMed

Wu, Xinwei; Griffin, John N; Sun, Shucun

2014-05-01

Studies of grazing food webs show that species traits can interact with environmental factors to determine the strength of trophic cascades, but analogous context dependencies in detrital food webs remain poorly understood. In predator-detritivore-plant interaction chains, predators are expected to indirectly suppress plant biomass by reducing the density of plant-facilitating detritivores. However, this outcome can be reversed where above-ground predators drive burrowing detritivores to lower soil levels, strengthening their plant-facilitating effects. Here, we show that these trait-mediated indirect interactions further depend on environmental context in a Tibetan alpine meadow. In our study system, undulating topography generates higher (dry soil) patches interspersed with lower (wet soil) patches. Because the ability of detritivores to form deep burrows is likely to be limited by oxygen availability in low patches (wet soil), we hypothesized that (i) burrowing detritivores would undergo a vertical habitat shift, allowing them to more effectively avoid predation, in high - but not low - patches, and (ii) this shift would transmit positive effects of predators to plants in high patches by improving conditions in the lower soil layer. We tested these hypotheses using complementary field and glasshouse experiments examining whether the cascading effects of above-ground predatory beetles (presence/absence) on the density and behaviour of tunnel-forming detritivorous beetles, soil properties, and plant growth varied with patch type (low/high). Results revealed that predatory beetles did not reduce the density of detritivores in either patch type but had context-dependent trait-mediated effects, increasing the tunnelling depth of detritivores, improving soil conditions and ultimately increasing plant biomass in the high but not low patches. This study adds to an emerging predictive framework linking predators to plants in detritus food webs, demonstrating that these indirect interactions depend not just on the relative habitat domains of predators and prey, but also on environmental conditions that can predictably constrain the behavioural response of detritivores to predation risk. © 2013 The Authors. Journal of Animal Ecology © 2013 British Ecological Society.

Operational Applications of Satellite Snowcover Observations

NASA Technical Reports Server (NTRS)

Rango, A. (Editor)

1975-01-01

LANDSAT and NOAA satellites data were used to study snow depth. These snow measurements were used to help forecast runoff and flooding. Many areas of California, Arizona, Colorado, and Wyoming were emphasized.

Occurrence of West Nile virus infection in raptors at the Salton Sea, California

USGS Publications Warehouse

Dusek, Robert J.; Iko, William M.; Hofmeister, Erik K.

2010-01-01

We investigated the prevalence of West Nile virus (WNV)-neutralizing antibodies and infectious virus, and the occurrence of overwinter transmission in two raptor species during January and March 2006 at the Salton Sea, Imperial County, California. We captured 208 American Kestrels (Falco sparverius) (January, n=100; March, n=108) and 116 Burrowing Owls (Athene cunicularia) (January, n=52; March, n=64). Laboratory analysis revealed that 83% of American Kestrels and 31% of Burrowing Owls were positive for WNV-neutralizing antibodies. Additionally, two seroconversions were detected in Burrowing Owls between January and March. Infectious WNV, consistent with acute infection, was not detected in any bird.

Protozoal hepatitis in a western burrowing owl (Athene cunicularia hypugaea)

USGS Publications Warehouse

Franson, J. Christian

2017-01-01

A western burrowing owl (Athene cunicularia hypugaea) found dead in southern California had many light-colored lesions visible grossly on its liver, and histopathology revealed extensive necrosis throughout the hepatic parenchyma. Single-celled organisms were seen in clear spaces within the areas of necrosis. The owl was diagnosed with protozoal hepatitis.

PARTICLE REMOVAL RATES BY THE MUD SHRIMP UPOGEBIA PUGETTENSIS, ITS BURROW, AND A COMMENSAL CLAM: EFFECTS ON ESTUARINE PHYTOPLANKTON ABUNDANCE

EPA Science Inventory

The burrowing shrimp Upogebia pugettensis is an abundant intertidal inhabitant of Pacific Northwest bays and estuaries where it lives commensally with the bivalve Cryptomya californica. Suspension-feeding activities by the shrimp and by its commensal clam, as well as particle se...

Burrowing (Speotyto cunicularia) Owl survival in prairie Canada

Treesearch

Kort M. Clayton; Josef K. Schmutz

1997-01-01

We studied survival of the endangered Burrowing Owl (Speotyto cunicularia) using radio-telemetry in both Alberta and Saskatchewan. Adult females exhibited the highest mean survival (0.83) whereas adult male (0.46) and juvenile (0.48) rates were similar. Most mortality occurred during the post-fledging period when there was a peak of activity around...

Identification of burrowing shrimp food sources along an estuarine gradient using fatty acid analysis and stable isotope ratios

USDA-ARS?s Scientific Manuscript database

Two species of burrowing shrimps occur in high densities in U.S. West Coast estuaries, the ghost shrimp (Neotrypaea californiensis) and the blue mud shrimp (Upogebia pugettensis). Both species of shrimp are considered ecosystem engineers as they bioturbate and irrigate extensive galleries in the sed...

Comparison of hydraulics and particle removal efficiencies in a mixed cell raceway and burrows pond rearing system

USDA-ARS?s Scientific Manuscript database

We compared the hydrodynamics of replicate experimental mixed cell and replicate standard Burrows pond rearing systems at the Dworshak National Fish Hatchery, ID, in an effort to identify methods for improved solids removal. We measured and compared the hydraulic residence time, particle removal eff...

Distribution of burrowing owls in east-central South Dakota

USGS Publications Warehouse

Shaffer, Jill A; Thiele, Jason P.

2013-01-01

Western burrowing owl (Athene cunicularia hypugaea) populations have declined across much of western North America, particularly at the northern and eastern edges of the species’ breeding range (Martell et al. 2001, Murphy et al. 2001, Shyry et al. 2001, Skeel et al. 2001, Klute et al. 2003). In South Dakota, the burrowing owl is a summer resident that historically was relatively common throughout the state, but its range has decreased in recent decades, especially in the eastern half of the state (Whitney et al. 1978, South Dakota Ornithologists’ Union [SDOU] 1991, Peterson 1995). Tallman et al. (2002) described the species as uncommon to locally common in western South Dakota, uncommon in the north-central part of the state, and casual (i.e., not within the species’ normal range, but with 3–10 records in the past 10 years) elsewhere in the eastern half. The burrowing owl is a Species of Greatest Conservation Need (South Dakota Department of Game, Fish and Parks [SDGFP] 2006) and a Level I Priority Species in South Dakota (Bakker 2005).

Diet of western Burrowing Owls wintering in southern Texas

USGS Publications Warehouse

Littles, C.J.; Williford, D.; Skoruppa, M.K.; Woodin, M.C.; Hickman, G.C.

2007-01-01

Winter diets of the western Burrowing Owl (Athene cunicularia hypugaea) are little known. We determined the diet of western Burrowing Owls wintering in southern Texas by analyzing the contents of 182 pellets collected over four winters (1999-2000, 2001-2002, 2002-2003, and 2003-2004) in three habitat types (agricultural, mainland grassland, and barrier island). Remains of a total of 7476 prey items were recovered, 98% of which were arthropods. Gryllidae (crickets) formed the largest component (50%) of the prey, followed by lepidopteran larvae (13%), beetles (8%), spiders (7%), and earwigs (6%). Although vertebrates, primarily small mammals and birds, represented only 2% of prey items by number, they represented most (71%) of the biomass. Northern pygmy mice (Baiomys taylori) and fulvous harvest mice (Reithrodontomys fulveccens) were the two most frequently consumed vertebrate species. In all habitats, arthropods, especially orthopterans, were the primary prey item by number, whereas vertebrates, primarily small mammals, were the most important by biomass. Greater consumption of arthropods by Burrowing Owls in agricultural areas may be a factor contributing to owl use of these highly altered environments. ?? 2007 The Raptor Research Foundation, Inc.

Mammalian mesocarnivore visitation at tortoise burrows in a wind farm

USGS Publications Warehouse

Agha, Mickey; Smith, Amanda L.; Lovich, Jeffrey E.; Delaney, David F.; Ennen, Joshua R.; Briggs, Jessica R.; Fleckenstein, Leo J.; Tennant, Laura A.; Puffer, Shellie R.; Walde, Andrew D.; Arundel, Terry; Price, Steven J.; Todd, Brian D.

2017-01-01

There is little information on predator–prey interactions in wind energy landscapes in North America, especially among terrestrial vertebrates. Here, we evaluated how proximity to roads and wind turbines affect mesocarnivore visitation with desert tortoises (Gopherus agassizii) and their burrows in a wind energy landscape. In 2013, we placed motion-sensor cameras facing the entrances of 46 active desert tortoise burrows in a 5.2-km2 wind energy facility near Palm Springs, California, USA. Cameras recorded images of 35 species of reptiles, mammals, and birds. Counts for 4 species of mesocarnivores at desert tortoise burrows increased closer to dirt roads, and decreased closer to wind turbines. Our results suggest that anthropogenic infrastructure associated with wind energy facilities could influence the general behavior of mammalian predators and their prey. Further investigation of proximate mechanisms that underlie road and wind turbine effects (i.e., ground vibrations, sound emission, and traffic volume) and on wind energy facility spatial designs (i.e., road and wind turbine configuration) could prove useful for better understanding wildlife responses to wind energy development. © 2017 The Wildlife Society.

Ichnologic evidence of a Cambrian age in the southern Amazon Craton: Implications for the onset of the Western Gondwana history

NASA Astrophysics Data System (ADS)

Santos, Hudson P.; Mángano, M. Gabriela; Soares, Joelson L.; Nogueira, Afonso C. R.; Bandeira, José; Rudnitzki, Isaac D.

2017-07-01

Colonization of the infaunal ecospace by burrowing bilaterians is one of the most important behavioral innovations during the Ediacaran-Cambrian transition. The establishment of vertical burrows by suspension feeders in high-energy nearshore settings during Cambrian Age 2 is reflected by the appearance of the Skolithos Ichnofacies. For the first time, unquestionable vertical burrows typical of the Skolithos Ichnofacies, such as Skolithos linearis, Diplocraterion parallelum and Arenicolites isp., are recorded from nearshore siliciclastic deposits of the Raizama Formation, southeastern Amazon Craton, Brazil. Integration of ichnologic and sedimentologic datasets suggests that these trace fossils record colonization of high-energy and well-oxygenated nearshore sandy environments. Chronostratigraphically, the presence of these vertical burrows indicates an age not older than early Cambrian for the Raizama Formation, which traditionally has been regarded as Ediacaran. Therefore, the Raizama ichnofauna illustrates the advent of modern Phanerozoic ecology marked by the Agronomic Revolution. The discovery of the Skolithos Ichnofacies in these shallow-marine strata suggests possible connections between some central Western Gondwana basins.

Living in a ``stethoscope'': burrow-acoustics promote auditory specializations in subterranean rodents

NASA Astrophysics Data System (ADS)

Lange, Simone; Burda, Hynek; Wegner, Regina E.; Dammann, Philip; Begall, Sabine; Kawalika, Mathias

2007-02-01

Subterranean mammals rely to a great extent on audition for communication and to be alerted to danger. The only hitherto published report on burrow acoustics revealed that in tunnels of blind mole-rats ( Spalax ehrenbergi), airborne sounds of 440 Hz propagated best whereas lower and higher frequencies were effectively attenuated. Morpho-functional analyses classify the ear of subterranean mammals as a low-sensitivity and low-frequency device. Concordantly, hearing is characterized by low sensitivity and a restricted frequency range tuned to low frequencies (0.5-4 kHz). Some authors considered the restricted hearing in subterranean mammals vestigial and degenerate due to under-stimulation. In contrast to this view stand a rich (mostly low-frequency) vocal repertoire and progressive structural specializations of the middle and inner ear. Thus, other authors considered these hearing characteristics adaptive. To test the hypothesis that acoustical environment in burrows of different species of subterranean mammals is similar, we measured sound attenuation in burrows of Fukomys mole-rats (formerly known as Cryptomys, cf. Kock et al. 2006) of two differently sized species at different locations in Zambia. We show that in these burrows, low-frequency sounds (200-800 Hz) are not only least attenuated but also their amplitude may be amplified like in a stethoscope (up to two times over 1 m). We suggest that hearing sensitivity has decreased during evolution of subterranean mammals to avoid over-stimulation of the ear in their natural environment.

Forecasting Cool Season Daily Peak Winds at Kennedy Space Center and Cape Canaveral Air Force Station

NASA Technical Reports Server (NTRS)

Barrett, Joe, III; Short, David; Roeder, William

2008-01-01

The expected peak wind speed for the day is an important element in the daily 24-Hour and Weekly Planning Forecasts issued by the 45th Weather Squadron (45 WS) for planning operations at Kennedy Space Center (KSC) and Cape Canaveral Air Force Station (CCAFS). The morning outlook for peak speeds also begins the warning decision process for gusts ^ 35 kt, ^ 50 kt, and ^ 60 kt from the surface to 300 ft. The 45 WS forecasters have indicated that peak wind speeds are a challenging parameter to forecast during the cool season (October-April). The 45 WS requested that the Applied Meteorology Unit (AMU) develop a tool to help them forecast the speed and timing of the daily peak and average wind, from the surface to 300 ft on KSC/CCAFS during the cool season. The tool must only use data available by 1200 UTC to support the issue time of the Planning Forecasts. Based on observations from the KSC/CCAFS wind tower network, surface observations from the Shuttle Landing Facility (SLF), and CCAFS upper-air soundings from the cool season months of October 2002 to February 2007, the AMU created multiple linear regression equations to predict the timing and speed of the daily peak wind speed, as well as the background average wind speed. Several possible predictors were evaluated, including persistence, the temperature inversion depth, strength, and wind speed at the top of the inversion, wind gust factor (ratio of peak wind speed to average wind speed), synoptic weather pattern, occurrence of precipitation at the SLF, and strongest wind in the lowest 3000 ft, 4000 ft, or 5000 ft. Six synoptic patterns were identified: 1) surface high near or over FL, 2) surface high north or east of FL, 3) surface high south or west of FL, 4) surface front approaching FL, 5) surface front across central FL, and 6) surface front across south FL. The following six predictors were selected: 1) inversion depth, 2) inversion strength, 3) wind gust factor, 4) synoptic weather pattern, 5) occurrence of precipitation at the SLF, and 6) strongest wind in the lowest 3000 ft. The forecast tool was developed as a graphical user interface with Microsoft Excel to help the forecaster enter the variables, and run the appropriate regression equations. Based on the forecaster's input and regression equations, a forecast of the day's peak and average wind is generated and displayed. The application also outputs the probability that the peak wind speed will be ^ 35 kt, 50 kt, and 60 kt.

Influence of contaminant burial depth on the bioaccumulation of PCBs and PBDEs by two benthic invertebrates (Monoporeia affinis and Marenzelleria spp.).

PubMed

Josefsson, Sarah; Leonardsson, Kjell; Gunnarsson, Jonas S; Wiberg, Karin

2011-11-01

The bioaccumulation of buried polychlorinated biphenyls (PCBs) and polybrominated diphenyl ethers (PBDEs) added to specific depths in sediment (2.0-2.5, 5.0-5.5 and 10.0-10.5cm) was studied in two infaunal species with similar feeding habits (surface deposit-feeders) but different bioturbation modes. The deep-burrowing polychaetes Marenzelleria spp. (Mz) displayed up to 36 times higher tissue concentrations of buried (spiked) contaminants than the surface-dwelling biodiffusing amphipod Monoporeia affinis. The differences in bioaccumulation were most pronounced for less hydrophobic contaminants due to the bioirrigating activity of Mz. Contaminants buried at shallow depths displayed higher accumulation than more deeply buried contaminants. In contrast, the bioaccumulation of unspiked (native) contaminants with a uniform vertical distribution in the sediment was similar between the species. For Mz, the BSAFs increased with increased K(OW) for the uniformly distributed contaminants, but decreased for the buried contaminants, which indicates that the dominant uptake routes of the buried contaminants can differ from the uniformly distributed contaminants. The surface sediment concentration of buried contaminants increased in Mz treatments, showing that Mz bioturbation can remobilize historically buried contaminants to the biologically active surface layer and increase the exposure for surface-dwelling species. Copyright © 2011 Elsevier Ltd. All rights reserved.

Patterns of surface burrow plugging in a colony of black-tailed prairie dogs occupied by black-footed ferrets

USGS Publications Warehouse

Eads, David E.; Biggins, Dean E.

2012-01-01

Black-tailed prairie dogs (Cynomys ludovicianus) can surface-plug openings to a burrow occupied by a black-footed ferret (Mustela nigripes). At a coarse scale, surface plugs are more common in colonies of prairie dogs occupied by ferrets than in colonies without ferrets. However, little is known about spatial and temporal patterns of surface plugging in a colony occupied by ferrets. In a 452-ha colony of black-tailed prairie dogs in South Dakota, we sampled burrow openings for surface plugs and related those data to locations of ferrets observed during spotlight surveys. Of 67,574 burrow openings in the colony between June and September 2007, 3.7% were plugged. In a colony-wide grid of 80 m × 80 m cells, the occurrence of surface plugging (≥1 opening plugged) was greater in cells used by ferrets (93.3% of cells) than in cells not observably used by ferrets (70.6%). Rates of surface plugging (percentages of openings plugged) were significantly higher in cells used by ferrets (median = 3.7%) than in cells without known ferret use (median = 3.2%). Also, numbers of ferret locations in cells correlated positively with numbers of mapped surface plugs in the cells. To investigate surface plugging at finer temporal and spatial scales, we compared rates of surface plugging in 20-m-radius circle-plots centered on ferret locations and in random plots 1–4 days after observing a ferret (Jun–Oct 2007 and 2008). Rates of surface plugging were greater in ferret-plots (median = 12.0%) than in random plots (median = 0%). For prairie dogs and their associates, the implications of surface plugging could be numerous. For instance, ferrets must dig to exit or enter plugged burrows (suggesting energetic costs), and surface plugs might influence microclimates in burrows and consequently influence species that cannot excavate soil (e.g., fleas that transmit the plague bacterium Yersinia pestis).

Implications of black-tailed prairie dog spatial dynamics to black-footed ferrets

USGS Publications Warehouse

Jachowski, D.S.; Millspaugh, J.J.; Biggins, D.E.; Livieri, T.M.; Matchett, M.R.

2008-01-01

The spatial dynamics of black-tailed prairie dog (Cynomys ludovicianus) colonies affect the utility of these environments for other wildlife, including the endangered black-footed ferret (Mustela nigripes). We used location data of active and inactive black-tailed prairie dog burrows to investigate colony structure, spatial distribution, and patch dynamics of two colonies at ferret recovery sites. We used kernel-based utilization distributions (UDs) of active and inactive burrows from two time periods (six and 11 years apart) as the basis for our analysis. Overall, the total extent of our prairie dog colonies changed little over time. However, within colonies, areas with high densities of active and inactive prairie dog burrows formed patches and the distribution of these patches changed in size, shape, and connectivity over time. At the Conata Basin site, high-density active burrow patches increased in total area covered while decreasing in connectivity as they shifted towards the perimeter of the colony over time. At the UL Bend site, we observed a similar but less pronounced shift over a longer period of time. At both sites, while at a large scale it appeared that prairie dogs were simply shifting areas of activity towards the perimeter of colonies and abandoning the center of colonies, we observed a dynamic interaction between areas of active and inactive burrows within colonies over time. Areas that previously contained inactive burrows tended to become active, and vice versa, leading us to hypothesize that there are shifts of activity areas within colonies over time as dictated by forage availability. The spatial dynamics we observed have important implications for techniques to estimate the suitability of ferret habitat and for the management of prairie dog colonies. First, fine-scale techniques for measuring prairie dog colonies that account for their patchy spatial distribution are needed to better assess ferret habitat suitability. Second, the shift of high-density areas of active prairie dog burrows, likely associated with changes in vegetation, suggests that through the management of vegetation we might be able to indirectly improve habitat for ferrets. Finally, we found that prairie dog distributions within a colony are a naturally dynamic process and that management strategies should consider the long-term value of both active and inactive areas within colonies.

Microplastic transport in soil by earthworms.

PubMed

Rillig, Matthias C; Ziersch, Lisa; Hempel, Stefan

2017-05-02

Despite great general benefits derived from plastic use, accumulation of plastic material in ecosystems, and especially microplastic, is becoming an increasing environmental concern. Microplastic has been extensively studied in aquatic environments, with very few studies focusing on soils. We here tested the idea that microplastic particles (polyethylene beads) could be transported from the soil surface down the soil profile via earthworms. We used Lumbricus terrestris L., an anecic earthworm species, in a factorial greenhouse experiment with four different microplastic sizes. Presence of earthworms greatly increased the presence of microplastic particles at depth (we examined 3 soil layers, each 3.5 cm deep), with smaller PE microbeads having been transported downward to a greater extent. Our study clearly shows that earthworms can be significant transport agents of microplastics in soils, incorporating this material into soil, likely via casts, burrows (affecting soil hydraulics), egestion and adherence to the earthworm exterior. This movement has potential consequences for exposure of other soil biota to microplastics, for the residence times of microplastic at greater depth, and for the possible eventual arrival of microplastics in the groundwater.

NASA's Potential Contributions to Avalanche Forecasting Using Active and Passive Microwave Measurements

NASA Technical Reports Server (NTRS)

Blonski, Slawomir

2007-01-01

This Candidate Solution is based on using active and passive microwave measurements acquired from NASA satellites to improve USDA (U.S. Department of Agriculture) Forest Service forecasting of avalanche danger. Regional Avalanche Centers prepare avalanche forecasts using ground measurements of snowpack and mountain weather conditions. In this Solution, range of the in situ observations is extended by adding remote sensing measurements of snow depth, snow water equivalent, and snowfall rate acquired by satellite missions that include Aqua, CloudSat, future GPM (Global Precipitation Measurement), and the proposed SCLP (Snow and Cold Land Processes). Measurements of snowpack conditions and time evolution are improved by combining the in situ and satellite observations with a snow model. Recurring snow observations from NASA satellites increase accuracy of avalanche forecasting, which helps the public and the managers of public facilities make better avalanche safety decisions.

Forecasting magma-chamber rupture at Santorini volcano, Greece.

PubMed

Browning, John; Drymoni, Kyriaki; Gudmundsson, Agust

2015-10-28

How much magma needs to be added to a shallow magma chamber to cause rupture, dyke injection, and a potential eruption? Models that yield reliable answers to this question are needed in order to facilitate eruption forecasting. Development of a long-lived shallow magma chamber requires periodic influx of magmas from a parental body at depth. This redistribution process does not necessarily cause an eruption but produces a net volume change that can be measured geodetically by inversion techniques. Using continuum-mechanics and fracture-mechanics principles, we calculate the amount of magma contained at shallow depth beneath Santorini volcano, Greece. We demonstrate through structural analysis of dykes exposed within the Santorini caldera, previously published data on the volume of recent eruptions, and geodetic measurements of the 2011-2012 unrest period, that the measured 0.02% increase in volume of Santorini's shallow magma chamber was associated with magmatic excess pressure increase of around 1.1 MPa. This excess pressure was high enough to bring the chamber roof close to rupture and dyke injection. For volcanoes with known typical extrusion and intrusion (dyke) volumes, the new methodology presented here makes it possible to forecast the conditions for magma-chamber failure and dyke injection at any geodetically well-monitored volcano.

On an improvement of UV index forecast: UV index diagnosis and forecast for Belsk, Poland, in Spring/Summer 1999

NASA Astrophysics Data System (ADS)

Krzyścin, J. W.; Jaroslawski, J.; Sobolewski, P.

2001-10-01

A forecast of the UV index for the following day is presented. The standard approach to the UV index modelling is applied, i.e., the clear-sky UV index is multiplied by the UV cloud transmission factor. The input to the clear-sky model (tropospheric ultraviolet and visible-TUV model, Madronich, in: M. Tevini (Ed.), Environmental Effects of Ultraviolet Radiation, Lewis Publisher, Boca Raton, /1993, p. 17) consists of the total ozone forecast (by a regression model using the observed and forecasted meteorological variables taken as the initial values of aviation (AVN) global model and their 24-hour forecasts, respectively) and aerosols optical depth (AOD) forecast (assumed persistence). The cloud transmission factor forecast is inferred from the 24-h AVN model run for the total (Sun/+sky) solar irradiance at noon. The model is validated comparing the UV index forecasts with the observed values, which are derived from the daily pattern of the UV erythemal irradiance taken at Belsk (52°N,21°E), Poland, by means of the UV Biometer Solar model 501A for the period May-September 1999. Eighty-one percent and 92% of all forecasts fall into /+/-1 and /+/-2 index unit range, respectively. Underestimation of UV index occurs only in 15%. Thus, the model gives a high security in Sun protection for the public. It is found that in /~35% of all cases a more accurate forecast of AOD is needed to estimate the daily maximum of clear-sky irradiance with the error not exceeding 5%. The assumption of the persistence of the cloud characteristics appears as an alternative to the 24-h forecast of the cloud transmission factor in the case when the AVN prognoses are not available.

Metapopulation dynamics of a Burrowing Owl (Speotyto cunicularia) population in Colorado

Treesearch

R. Scott Lutz; David L. Plumpton

1997-01-01

We banded 555 Burrowing Owls (Speotyto cunicularia) either as adults (after hatch year; AHY) or as young of the year (hatch year; HY) and used capture-recapture models to estimate survival and recapture rates and Leslie matrix models to project population growth over time at the 6,900-ha Rocky Mountain Arsenal National Wildlife Refuge (RMANWR),...

Prevalence and abundance of fleas in black-tailed prairie dog burrows: implications for the transmission of plague (Yersinia pestis).

PubMed

Salkeld, Dan J; Stapp, Paul

2008-06-01

Plague, the disease caused by the bacterium Yersinia pestis, can have devastating impacts on North American wildlife. Epizootics, or die-offs, in prairie dogs (Cynomys ludovicianus) occur sporadically and fleas (Siphonaptera) are probably important in the disease's transmission and possibly as maintenance hosts of Y. pestis between epizootics. We monitored changes in flea abundance in prairie dog burrows in response to precipitation, temperature, and plague activity in shortgrass steppe in northern Colorado. Oropsylla hirsuta was the most commonly found flea, and it increased in abundance with temperature. In contrast, Oropsylla tuberculata cynomuris declined with rising temperature. During plague epizootics, flea abundance in burrows increased and then subsequently declined after the extirpation of their prairie dog hosts.

Near-real-time simulation and internet-based delivery of forecast-flood inundation maps using two-dimensional hydraulic modeling--A pilot study for the Snoqualmie River, Washington

USGS Publications Warehouse

Jones, Joseph L.; Fulford, Janice M.; Voss, Frank D.

2002-01-01

A system of numerical hydraulic modeling, geographic information system processing, and Internet map serving, supported by new data sources and application automation, was developed that generates inundation maps for forecast floods in near real time and makes them available through the Internet. Forecasts for flooding are generated by the National Weather Service (NWS) River Forecast Center (RFC); these forecasts are retrieved automatically by the system and prepared for input to a hydraulic model. The model, TrimR2D, is a new, robust, two-dimensional model capable of simulating wide varieties of discharge hydrographs and relatively long stream reaches. TrimR2D was calibrated for a 28-kilometer reach of the Snoqualmie River in Washington State, and is used to estimate flood extent, depth, arrival time, and peak time for the RFC forecast. The results of the model are processed automatically by a Geographic Information System (GIS) into maps of flood extent, depth, and arrival and peak times. These maps subsequently are processed into formats acceptable by an Internet map server (IMS). The IMS application is a user-friendly interface to access the maps over the Internet; it allows users to select what information they wish to see presented and allows the authors to define scale-dependent availability of map layers and their symbology (appearance of map features). For example, the IMS presents a background of a digital USGS 1:100,000-scale quadrangle at smaller scales, and automatically switches to an ortho-rectified aerial photograph (a digital photograph that has camera angle and tilt distortions removed) at larger scales so viewers can see ground features that help them identify their area of interest more effectively. For the user, the option exists to select either background at any scale. Similar options are provided for both the map creator and the viewer for the various flood maps. This combination of a robust model, emerging IMS software, and application interface programming should allow the technology developed in the pilot study to be applied to other river systems where NWS forecasts are provided routinely.

Quality Assessment of the Cobel-Isba Numerical Forecast System of Fog and Low Clouds

NASA Astrophysics Data System (ADS)

Bergot, Thierry

2007-06-01

Short-term forecasting of fog is a difficult issue which can have a large societal impact. Fog appears in the surface boundary layer and is driven by the interactions between land surface and the lower layers of the atmosphere. These interactions are still not well parameterized in current operational NWP models, and a new methodology based on local observations, an adaptive assimilation scheme and a local numerical model is tested. The proposed numerical forecast method of foggy conditions has been run during three years at Paris-CdG international airport. This test over a long-time period allows an in-depth evaluation of the forecast quality. This study demonstrates that detailed 1-D models, including detailed physical parameterizations and high vertical resolution, can reasonably represent the major features of the life cycle of fog (onset, development and dissipation) up to +6 h. The error on the forecast onset and burn-off time is typically 1 h. The major weakness of the methodology is related to the evolution of low clouds (stratus lowering). Even if the occurrence of fog is well forecasted, the value of the horizontal visibility is only crudely forecasted. Improvements in the microphysical parameterization and in the translation algorithm converting NWP prognostic variables into a corresponding horizontal visibility seems necessary to accurately forecast the value of the visibility.

High Resolution Trajectory-Based Smoke Forecasts Using VIIRS Aerosol Optical Depth and NUCAPS Carbon Monoxide Retrievals

NASA Astrophysics Data System (ADS)

Pierce, R. B.; Smith, N.; Barnet, C.; Barnet, C. D.; Kondragunta, S.; Davies, J. E.; Strabala, K.

2016-12-01

We use Suomi National Polar-orbiting Partnership (S-NPP) Visible Infrared Imaging Radiometer Suite (VIIRS) Aerosol Optical Depth (AOD) and combined Cross-track Infrared Sounder (CrIS) and Advanced Technology Microwave Sounder (ATMS) NOAA-Unique CrIS-ATMS Processing System (NUCAPS) carbon monoxide (CO) retrievals to initialize trajectory-based, high spatial resolution North American smoke dispersion forecasts during the May 2016 Fort McMurray wildfire in northern Alberta and the July 2016 Soberanes Fire in Northern California. These two case studies illustrate how long range transport of wild fire smoke can adversely impact surface air quality thousands of kilometers downwind and how local topographic flow can lead to complex transport patterns near the wildfire source region. The NUCAPS CO retrievals are shown to complement the high resolution VIIRS AOD retrievals by providing retrievals in partially cloudy scenes and also providing information on the vertical distribution of the wildfire smoke. This work addresses the need for low latency, web-based, high resolution forecasts of smoke dispersion for use by NWS Incident Meteorologists (IMET) to support on-site decision support services for fire incident management teams. The primary user community for the IDEA-I smoke forecasts is the Western regions of the NWS and US EPA due to the significant impacts of wildfires in these regions. Secondary users include Alaskan NWS offices and Western State and Local air quality management agencies such as the Western Regional Air Partnership (WRAP).

A practitioner's tool for assessing glide crack activity

USGS Publications Warehouse

Hendrikx, Jordy; Peitzsch, Erich H.; Fagre, Daniel B.

2010-01-01

Glide cracks can result in full-depth glide avalanche release. Avalanches from glide cracks are notoriously difficult to forecast, but are a reoccurring problem in a number of different avalanche forecasting programs across a range of snow climates. Despite this, there is no consensus for how to best manage, mitigate, or even observe glide cracks and the potential resultant avalanche activity. It is thought that an increase in the rate of snow gliding occurs prior to full-depth avalanche activity, so frequent measuring of glide crack movement provides an index of instability. Therefore, a comprehensive avalanche program with glide crack avalanche activity, should at the least, undertake some form of direct monitoring of glide crack movement. In this paper we present a simple, cheap and repeatable method to track glide crack activity using a series of stakes, reflectors and a laser rangefinder (LaserTech TruPulse360B) linked to a GPS (Trimble Geo XH). We tested the methodology in April 2010, on a glide crack above the Going to the Sun Road in Glacier National Park, Montana, USA. This study suggests a new method to better track the development and movement of glide cracks. It is hoped that by introducing a workable method to easily record glide crack movement, avalanche forecasters will improve their understanding of when, or if, avalanche activity will ensue. Our initial results suggest that these new observations, when combined with local micrometeorological data will result in improved process understanding and forecasting of these phenomena.

Comparative analysis of operational forecasts versus actual weather conditions in airline flight planning, volume 4

NASA Technical Reports Server (NTRS)

Keitz, J. F.

1982-01-01

The impact of more timely and accurate weather data on airline flight planning with the emphasis on fuel savings is studied. This volume of the report discusses the results of Task 4 of the four major tasks included in the study. Task 4 uses flight plan segment wind and temperature differences as indicators of dates and geographic areas for which significant forecast errors may have occurred. An in-depth analysis is then conducted for the days identified. The analysis show that significant errors occur in the operational forecast on 15 of the 33 arbitrarily selected days included in the study. Wind speeds in an area of maximum winds are underestimated by at least 20 to 25 kts. on 14 of these days. The analysis also show that there is a tendency to repeat the same forecast errors from prog to prog. Also, some perceived forecast errors from the flight plan comparisons could not be verified by visual inspection of the corresponding National Meteorological Center forecast and analyses charts, and it is likely that they are the result of weather data interpolation techniques or some other data processing procedure in the airlines' flight planning systems.

Development, Application, and Transition of Aerosol and Trace Gas Products Derived from Next-Generation Satellite Observations to Operations

NASA Technical Reports Server (NTRS)

Berndt, Emily; Naeger, Aaron; Zavodsky, Bradley; McGrath, Kevin; LaFontaine, Frank

2016-01-01

NASA Short-term Prediction Research and Transition (SPoRT) Center has a history of successfully transitioning unique observations and research capabilities to the operational weather community to improve short-term forecasts. SPoRTstrives to bridge the gap between research and operations by maintaining interactive partnerships with end users to develop products that match specific forecast challenges, provide training, and assess the products in the operational environment. This presentation focuses on recent product development, application, and transition of aerosol and trace gas products to operations for specific forecasting applications. Recent activities relating to the SPoRT ozone products, aerosol optical depth composite product, sulfur dioxide, and aerosol index products are discussed.

L-band Microwave Remote Sensing and Land Data Assimilation Improve the Representation of Prestorm Soil Moisture Conditions for Hydrologic Forecasting

NASA Technical Reports Server (NTRS)

Crow, W. T.; Chen, F.; Reichle, R. H.; Liu, Q.

2017-01-01

Recent advances in remote sensing and land data assimilation purport to improve the quality of antecedent soil moisture information available for operational hydrologic forecasting. We objectively validate this claim by calculating the strength of the relationship between storm-scale runoff ratio (i.e., total stream flow divided by total rainfall accumulation in depth units) and pre-storm surface soil moisture estimates from a range of surface soil moisture data products. Results demonstrate that both satellite-based, L-band microwave radiometry and the application of land data assimilation techniques have significantly improved the utility of surface soil moisture data sets for forecasting stream flow response to future rainfall events.

L-band microwave remote sensing and land data assimilation improve the representation of pre-storm soil moisture conditions for hydrologic forecasting.

PubMed

Crow, W T; Chen, F; Reichle, R H; Liu, Q

2017-06-16

Recent advances in remote sensing and land data assimilation purport to improve the quality of antecedent soil moisture information available for operational hydrologic forecasting. We objectively validate this claim by calculating the strength of the relationship between storm-scale runoff ratio (i.e., total stream flow divided by total rainfall accumulation in depth units) and pre-storm surface soil moisture estimates from a range of surface soil moisture data products. Results demonstrate that both satellite-based, L-band microwave radiometry and the application of land data assimilation techniques have significantly improved the utility of surface soil moisture data sets for forecasting stream flow response to future rainfall events.

L-band microwave remote sensing and land data assimilation improve the representation of pre-storm soil moisture conditions for hydrologic forecasting

PubMed Central

Crow, W.T.; Chen, F.; Reichle, R.H.; Liu, Q.

2018-01-01

Recent advances in remote sensing and land data assimilation purport to improve the quality of antecedent soil moisture information available for operational hydrologic forecasting. We objectively validate this claim by calculating the strength of the relationship between storm-scale runoff ratio (i.e., total stream flow divided by total rainfall accumulation in depth units) and pre-storm surface soil moisture estimates from a range of surface soil moisture data products. Results demonstrate that both satellite-based, L-band microwave radiometry and the application of land data assimilation techniques have significantly improved the utility of surface soil moisture data sets for forecasting stream flow response to future rainfall events. PMID:29657342

The flood event of 10-12 November 2013 on the Tiber River basin (central Italy): real-time flood forecasting with uncertainty supporting risk management and decision-making

NASA Astrophysics Data System (ADS)

Berni, Nicola; Brocca, Luca; Barbetta, Silvia; Pandolfo, Claudia; Stelluti, Marco; Moramarco, Tommaso

2014-05-01

The Italian national hydro-meteorological early warning system is composed by 21 regional offices (Functional Centres, CF). Umbria Region (central Italy) CF provides early warning for floods and landslides, real-time monitoring and decision support systems (DSS) for the Civil Defence Authorities when significant events occur. The alert system is based on hydrometric and rainfall thresholds with detailed procedures for the management of critical events in which different roles of authorities and institutions involved are defined. The real-time flood forecasting system is based also on different hydrological and hydraulic forecasting models. Among these, the MISDc rainfall-runoff model ("Modello Idrologico SemiDistribuito in continuo"; Brocca et al., 2011) and the flood routing model named STAFOM-RCM (STAge Forecasting Model-Rating Curve Model; Barbetta et al., 2014) are continuously operative in real-time providing discharge and stage forecasts, respectively, with lead-times up to 24 hours (when quantitative precipitation forecasts are used) in several gauged river sections in the Upper-Middle Tiber River basin. Models results are published in real-time in the open source CF web platform: www.cfumbria.it. MISDc provides discharge and soil moisture forecasts for different sub-basins while STAFOM-RCM provides stage forecasts at hydrometric sections. Moreover, through STAFOM-RCM the uncertainty of the forecast stage hydrograph is provided in terms of 95% Confidence Interval (CI) assessed by analyzing the statistical properties of model output in terms of lateral. In the period 10th-12th November 2013, a severe flood event occurred in Umbria mainly affecting the north-eastern area and causing significant economic damages, but fortunately no casualties. The territory was interested by intense and persistent rainfall; the hydro-meteorological monitoring network recorded locally rainfall depth over 400 mm in 72 hours. In the most affected area, the recorded rainfall depths correspond approximately to a return period of 200 years. Most rivers in Umbria have been involved, exceeding hydrometric thresholds and causing flooding (e.g. Chiascio river). The flood event was continuously monitored at the Umbria Region CF and the possible evolution predicted and assessed on the basis of the model forecasts. The predictions provided by MISDc and STAFOM-RCM were found useful to support real-time decision-making addressed to flood risk management. Moreover, the quantification of the uncertainty affecting the deterministic forecast stages was found consistent with the level of confidence selected and had practical utility corroborating the need of coupling deterministic forecast and 'uncertainty' when the model output is used to support decisions about flood management. REFERENCES Barbetta, S., Moramarco, T., Brocca, L., Franchini, M., Melone, F. (2014). Confidence interval of real-time forecast stages provided by the STAFOM-RCM model: the case study of the Tiber River (Italy). Hydrological Processes, 28(3), 729-743. Brocca, L., Melone, F., Moramarco, T. (2011). Distributed rainfall-runoff modelling for flood frequency estimation and flood forecasting. Hydrological Processes, 25 (18), 2801-2813

Crude oil toxicity to fiddler crabs (Uca longisignalis and Uca panacea) from the northern Gulf of Mexico: Impacts on bioturbation, oxidative stress, and histology of the hepatopancreas.

PubMed

Franco, Marco E; Felgenhauer, Bruce E; Klerks, Paul L

2018-02-01

The intensive drilling and extraction of fossil fuels in the Gulf of Mexico result in a considerable risk of oil spills impacting its coastal ecosystems. Impacts are more likely to be far-reaching if the oil affects ecosystem engineers like fiddler crabs, whose activities modify biogeochemical processes in the sediment. The present study investigated effects of oil on the fiddler crabs Uca longisignalis and Uca panacea, which are important as ecosystem engineers and as prey for a wide variety of species. The present study used mesocosms and microcosms to investigate the effects of crude oil on fiddler crab burrowing and to assess cellular and tissue damage by the oil. Fiddler crabs were exposed for periods of 5 or 10 d to oil concentrations up to 55 mg/cm 2 on the sediment surface. Their burrowing was delayed, their burrows were smaller, and they transported less sediment in the presence of oil. The hepatopancreas had elevated levels of oxidative stress and a higher abundance of blister cells, which play a role in secretory processes. Interspecific differences were observed; most effects were strongest in U. panacea, though burrowing was more strongly affected in U. longisignalis. The present study demonstrates that crude oil is likely to impact fiddler crabs and many species that depend on them for their diet or for the ecological changes that result from their burrowing. Environ Toxicol Chem 2018;37:491-500. © 2017 SETAC. © 2017 SETAC.

Transient dwarfism of soil fauna during the Paleocene–Eocene Thermal Maximum

PubMed Central

Smith, Jon J.; Hasiotis, Stephen T.; Kraus, Mary J.; Woody, Daniel T.

2009-01-01

Soil organisms, as recorded by trace fossils in paleosols of the Willwood Formation, Wyoming, show significant body-size reductions and increased abundances during the Paleocene–Eocene Thermal Maximum (PETM). Paleobotanical, paleopedologic, and oxygen isotope studies indicate high temperatures during the PETM and sharp declines in precipitation compared with late Paleocene estimates. Insect and oligochaete burrows increase in abundance during the PETM, suggesting longer periods of soil development and improved drainage conditions. Crayfish burrows and molluscan body fossils, abundant below and above the PETM interval, are significantly less abundant during the PETM, likely because of drier floodplain conditions and lower water tables. Burrow diameters of the most abundant ichnofossils are 30–46% smaller within the PETM interval. As burrow size is a proxy for body size, significant reductions in burrow diameter suggest that their tracemakers were smaller bodied. Smaller body sizes may have resulted from higher subsurface temperatures, lower soil moisture conditions, or nutritionally deficient vegetation in the high-CO2 atmosphere inferred for the PETM. Smaller soil fauna co-occur with dwarf mammal taxa during the PETM; thus, a common forcing mechanism may have selected for small size in both above- and below-ground terrestrial communities. We predict that soil fauna have already shown reductions in size over the last 150 years of increased atmospheric CO2 and surface temperatures or that they will exhibit this pattern over the next century. We retrodict also that soil fauna across the Permian-Triassic and Triassic-Jurassic boundary events show significant size decreases because of similar forcing mechanisms driven by rapid global warming. PMID:19805060

Transient dwarfism of soil fauna during the Paleocene-Eocene Thermal Maximum.

PubMed

Smith, Jon J; Hasiotis, Stephen T; Kraus, Mary J; Woody, Daniel T

2009-10-20

Soil organisms, as recorded by trace fossils in paleosols of the Willwood Formation, Wyoming, show significant body-size reductions and increased abundances during the Paleocene-Eocene Thermal Maximum (PETM). Paleobotanical, paleopedologic, and oxygen isotope studies indicate high temperatures during the PETM and sharp declines in precipitation compared with late Paleocene estimates. Insect and oligochaete burrows increase in abundance during the PETM, suggesting longer periods of soil development and improved drainage conditions. Crayfish burrows and molluscan body fossils, abundant below and above the PETM interval, are significantly less abundant during the PETM, likely because of drier floodplain conditions and lower water tables. Burrow diameters of the most abundant ichnofossils are 30-46% smaller within the PETM interval. As burrow size is a proxy for body size, significant reductions in burrow diameter suggest that their tracemakers were smaller bodied. Smaller body sizes may have resulted from higher subsurface temperatures, lower soil moisture conditions, or nutritionally deficient vegetation in the high-CO(2) atmosphere inferred for the PETM. Smaller soil fauna co-occur with dwarf mammal taxa during the PETM; thus, a common forcing mechanism may have selected for small size in both above- and below-ground terrestrial communities. We predict that soil fauna have already shown reductions in size over the last 150 years of increased atmospheric CO(2) and surface temperatures or that they will exhibit this pattern over the next century. We retrodict also that soil fauna across the Permian-Triassic and Triassic-Jurassic boundary events show significant size decreases because of similar forcing mechanisms driven by rapid global warming.

Ichnology and paleosubstrates of Austin Chalk (Cretaceous) outcrops: Southern Dallas and Ellis Counties, Texas

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dawson, W.C.; Reaser, D.F.

1991-03-01

Ichnofossils are abundant in outcrops of the Austin Chalk near Waxahachie, Texas (designated site of the Super-Conducting Super Collider). The abundance and diversity of ichnofossils in Austin strata contrast with the paucity of other macrofossils, except large inoceramids. The lower Austin Chalk (Coniacian) disconformably overlies the Eagle Ford Shale (Turonian). Planolites, Thalassinoides, and Chondrites are conspicuous in the lower Austin. Some lower Austin strata contain well-preserved burrows having menicus fillings. However, most lower Austin ichnofossils are poorly preserved and have compacted. The middle Austin Marl and upper Austin Chalk (Santonain) contain Planolites, Chondrites, Thalassinoides, and Pseudobilobites. Several thin, intensely burrowed,more » Fe-stained, horizons within the middle Austin represent omission surfaces having postomission Thalassinoides. The upper Austin disconformably underlies the Taylor Marl (Campanian). The Austin-Taylor contact is a Rhizocorallium-infested omission surface overlain by a condensed bed of phosphatic and pyritic bioclasts. Upper Austin occurrences of Rhizocorallium and Pseudobilobites are unique for North American Cretaceous chalks. Based on cross-cutting relationships and differences in morphology, diameter, and burrow-filling sediments, numerous ichnospecies of Thalassinoides are discernable throughout the Austin. Variations in preservation quality exhibited by successive generations of ichnofossils record progressive changes in substrate consistency. Earliest formed burrows have diffuse outlines representing an initial thixotropic (softground) Austin substrate. Subsequent generations of burrows have more distinct outlines recording a gradual increase in substrate firmness. Paleo-firmgrounds are common in Austin outcrops; evidence of hardgrounds is lacking. The Thalassinoides-dominated Austin ichnoassemblage represents an inner shelf paleoenvironment.« less

Transient dwarfism of soil fauna during the Paleocene-Eocene Thermal Maximum

USGS Publications Warehouse

Smith, J.J.; Hasiotis, S.T.; Kraus, M.J.; Woody, D.T.

2009-01-01

Soil organisms, as recorded by trace fossils in paleosols of the Willwood Formation, Wyoming, show significant body-size reductions and increased abundances during the Paleocene-Eocene Thermal Maximum (PETM). Paleobotanical, paleopedologic, and oxygen isotope studies indicate high temperatures during the PETM and sharp declines in precipitation compared with late Paleocene estimates. Insect and oligochaete burrows increase in abundance during the PETM, suggesting longer periods of soil development and improved drainage conditions. Crayfish burrows and molluscan body fossils, abundant below and above the PETM interval, are significantly less abundant during the PETM, likely because of drier floodplain conditions and lower water tables. Burrow diameters of the most abundant ichnofossils are 30-46% smaller within the PETM interval. As burrow size is a proxy for body size, significant reductions in burrow diameter suggest that their tracemakers were smaller bodied. Smaller body sizes may have resulted from higher subsurface temperatures, lower soil moisture conditions, or nutritionally deficient vegetation in the high-CO2 atmosphere inferred for the PETM. Smaller soil fauna co-occur with dwarf mammal taxa during the PETM; thus, a common forcing mechanism may have selected for small size in both above- and below-ground terrestrial communities. We predict that soil fauna have already shown reductions in size over the last 150 years of increased atmospheric CO2 and surface temperatures or that they will exhibit this pattern over the next century. We retrodict also that soil fauna across the Permian-Triassic and Triassic-Jurassic boundary events show significant size decreases because of similar forcing mechanisms driven by rapid global warming.

Burrowing herbivores alter soil carbon and nitrogen dynamics in a semi-arid ecosystem, Argentina

Treesearch

Kenneth L. Clark; Lyn C. Branch; Jose L. Hierro; Diego Villarreal

2016-01-01

Activities of burrowing herbivores, including movement of soil and litter and deposition of waste material, can alter the distribution of labile carbon (C) and nitrogen (N) in soil, affecting spatial patterning of nutrient dynamics in ecosystems where they are abundant. Their role in ecosystem processes in surface soil has been studied extensively, but effects of...

Environmental Assessment of Perimeter Road Maintenance at Buckley Air Force Base, Colorado

DTIC Science & Technology

2008-05-01

species include northern prairie lizard (Sceloporus undulatues garmani), bullsnake (Pituophis catenifer), western hog-nosed snake (Heterodon nasicus...plains garter snake (Thamnophis radix), and prairie rattlesnake (Crotalus viridis) (BAFB 2004a). Threatened, Endangered, and Other Sensitive Species...facilities, and poisoning of black-tailed prairie dogs in critical areas. Burrowing Owl. Burrowing owls are listed as threatened in Colorado but also

The effects of predator exclusion and food supplementation on Burrowing Owl (Speotyto cunicularia) population change in Saskatchewan

Treesearch

Troy I. Wellicome; Geoffrey L. Holroyd; Karyn Scalise; Earl R. Wiltse

1997-01-01

If low reproductive output plays an important role in the population decline of the Burrowing Owl (Speotyto cunicularia,) in Canada, we predicted the decline would slow or stop in our study population after consecutive years of productivity enhancement via food supplementation and predator exclusion. In the portion of our study site for which...

Ghost shrimps (Decapoda: Axiidea: Callianassidae) as producers of an Upper Miocene trace fossil association from sublittoral deposits of Lake Pannon (Vienna Basin, Slovakia)

PubMed Central

Hyžný, Matúš; Šimo, Vladimír; Starek, Dušan

2015-01-01

Numerous trace fossils are described from the Late Miocene sediments of the Bzenec Formation exposed at the Gbely section (the Vienna Basin, Slovakia). During deposition of the sediments the area was part of the large, long-lived brackish to freshwater Lake Pannon. Most of the trace fossils are attributed herein to Egbellichnus jordidegiberti igen et ispec. nov. and are interpreted as burrows produced by decapod crustaceans, specifically by a ghost shrimp of the family Callianassidae. This interpretation is based on two independent lines of evidence: environmental requirements of large bioturbators and the burrow morphology itself. The new ichnotaxon is distinguished from other related ichnotaxa by a combination of typically inclined (roughly at an angle of 45°) cylindrical burrows, absence of lining, and tunnels making loops or bends at approximately right angles. The burrow systems at Gbely document the survival of ghost shrimp long after the closure of all seaways and the origin of Lake Pannon. As today, no ghost shrimp are known from long-lived brackish lakes. Egbellichnus from Gbely is the only, although indirect, record of ghost shrimp from a brackish lake environment reported so far. PMID:26089575

Trophic specialization drives morphological evolution in sea snakes.

PubMed

Sherratt, Emma; Rasmussen, Arne R; Sanders, Kate L

2018-03-01

Viviparous sea snakes are the most rapidly speciating reptiles known, yet the ecological factors underlying this radiation are poorly understood. Here, we reconstructed dated trees for 75% of sea snake species and quantified body shape (forebody relative to hindbody girth), maximum body length and trophic diversity to examine how dietary specialization has influenced morphological diversification in this rapid radiation. We show that sea snake body shape and size are strongly correlated with the proportion of burrowing prey in the diet. Specialist predators of burrowing eels have convergently evolved a 'microcephalic' morphotype with dramatically reduced forebody relative to hindbody girth and intermediate body length. By comparison, snakes that predominantly feed on burrowing gobies are generally short-bodied and small-headed, but there is no evidence of convergent evolution. The eel specialists also exhibit faster rates of size and shape evolution compared to all other sea snakes, including those that feed on gobies. Our results suggest that trophic specialization to particular burrowing prey (eels) has invoked strong selective pressures that manifest as predictable and rapid morphological changes. Further studies are needed to examine the genetic and developmental mechanisms underlying these dramatic morphological changes and assess their role in sea snake speciation.

Tidal Flooding and Vegetation Patterns in a Salt Marsh Tidal Creek Imaged by Low-altitude Balloon Aerial Photography

NASA Astrophysics Data System (ADS)

White, S. M.; Madsen, E.

2013-12-01

Inundation of marsh surfaces by tidal creek flooding has implications for the headward erosion of salt marsh creeks, effect of rising sea levels, biological zonation, and marsh ecosystem services. The hydroperiod; as the frequency, duration, depth and flux of water across the marsh surface; is a key factor in salt marsh ecology, but remains poorly understood due to lack of data at spatial scales relevant to tracking the spatial movement of water across the marsh. This study examines how hydroperiod, drainage networks, and tidal creek geomorphology on the vegetation at Crab Haul Creek. Crab Haul Creek is the farthest landward tidal basin in North Inlet, a bar-built estuary in South Carolina. This study measures the hydroperiod in the headwaters Crab Haul Creek with normal and near-IR photos from a helium balloon Helikite at 75-100 m altitude. Photos provide detail necessary to resolve the waterline and delineate the hydroperiod during half tidal cycles by capturing the waterline hourly from the headwaters to a piezometer transect 260 meters north. The Helikite is an ideal instrument for local investigations of surface hydrology due to its maneuverability, low cost, ability to remain aloft for extended time over a fixed point, and ability to capture high-resolution images. Photographs taken from aircraft do not provide the detail necessary to determine the waterline on the marsh surface. The near-IR images make the waterline more distinct by increasing the difference between wet and dry ground. In the headwaters of Crab Haul Creek, individual crab burrows are detected by automated image classification and the number of crab burrows and their spatial density is tracked from January-August. Crab burrows are associated with the unvegetated region at the creek head, and we relate their change over time to the propagation of the creek farther into the tidal basin. Plant zonation is influenced by the hydroperiod, but also may be affected by salinity, water table depth, and soil water content. These other factors are all directly affected by the hydroperiod, creating a complex system of feedbacks. Inundation frequencies show a pronounced relationship to zonation. Creek bank height and the hydroperiod have a curvilinear relationship at low bank heights such that small decreases in creek bank height can result in large increases in inundation frequency. Biological zonation is not simply a result of bank height and inundation frequency, other contributing factors include species competition, adaptability, and groundwater flow. Vegetation patterns delineated by a ground-based GPS survey and image classification from the aerial photos show that not all changes in eco-zonation are a direct function of elevation. Some asymmetry across the creek is observed in plant habitat, and eliminating topography (and thereby tidal inundation) as a factor, we attribute the remaining variability to groundwater flow.

In-Depth Analysis of the JACK Model.

DOT National Transportation Integrated Search

2009-04-30

Recently, as part of a comprehensive analysis of budget and funding options, a TxDOT : special task force has examined the agencys current financial forecasting methods and has : developed a model designed to estimate future State Highway Fund rev...

Test Area B-70 Final Range Environmental Assessment, Revision 1

DTIC Science & Technology

2009-06-01

the Sandhills and Open Grassland ecological associations on the Eglin Range, where it excavates a tunnel -like burrow for shelter from climatic extremes...Sciurus niger Gallberry Ilex glabra Least Shrew Cryptotis parva Gopher Apple Licania michauxii Cottontail Rabbit Sylvilagus floridanus Sand Blackberry ...within the Sandhills and Open Grassland ecological associations on Eglin, where it excavates a tunnel - like burrow for shelter from climatic extremes and

Observation Uncertainty in Gaussian Sensor Networks

DTIC Science & Technology

2006-01-23

Ziv , J., and Lempel , A. A universal algorithm for sequential data compression . IEEE Transactions on Information Theory 23, 3 (1977), 337–343. 73 ...using the Lempel - Ziv algorithm [42], context-tree weighting [41], or the Burrows-Wheeler Trans- form [4], [15], for example. These source codes will...and Computation (Monticello, IL, September 2004). [4] Burrows, M., and Wheeler, D. A block sorting lossless data compression algorithm . Tech.

Kilop Cretaceous Hardground (Kale, Gümüshane, NE Turkey):description and origin

NASA Astrophysics Data System (ADS)

Eren, Muhsin; Tasli, Kemal

2002-06-01

A hardground surface is well exposed in the Kilop area of Kale (Gümüshane, NE Turkey) which forms part of the Eastern Pontides. Here, the hardground is underlain by shallow water Lower Cretaceous limestones, and overlain by Upper Cretaceous red limestones/marls which contains a planktonic microfauna including Globotruncanidae. In the field, the recognition of the hardground is based on the presence of extensive burrows (especially vertical burrows), the encrusting rudistid bivalve Requienia, neptunian-dykes with infills of pelagic sediments and synsedimentary faults. Skolithos and Thalassinoides-type burrows are present. Some burrow walls show iron hydroxide-staining. The extensive burrowing occurred prior to lithification. On the other hand, the neptunian-dykes and synsedimentary faults, which cut the hard ground, occurred after the lithification. These features indicate the progressive hardening of the substrate. The burrowed limestone consists of an intrabioclastic peloidal grainstone which was deposited in an intertidal to shallow, subtidal, moderate to relatively high energy environment. The peloidal limestone shows little or no evidence of submarine cementation, characterized by only scarce relics of isopachous cement rims of bladed calcite spar. The grainstone cement is composed predominantly of blocky calcite and overgrowth calcite cements on the echinoid-fragments. The origin of this cement is controversial. Biostratigraphic analysis of the limestones demonstrates that there is a marked stratigraphic gap (hiatus), spanning the Aptian to the Santonian, in the Cretaceous of the Kilop area. The formation of the Kilop Hardground is related to the break-up and subsidence of the Eastern Pontides carbonate platform during the formation of the Black Sea backarc basin. Hardground development was initiated in a shallow marine environment of slow sedimentation and with moderate to high energy indicating slow subsidence. Later, the hardground subsided abruptly, as shown by the deposition of pelagic sediments on the hardground surface. During drowning, the Kilop area was converted to a bypass-margin where currents were effective. The formation of the hardground may also have been associated with an eustatic rise in sea-level.

A back translation of pregabalin and carbamazepine against evoked and non-evoked endpoints in the rat spared nerve injury model of neuropathic pain.

PubMed

Lau, W; Dykstra, C; Thevarkunnel, S; Silenieks, L B; de Lannoy, I A M; Lee, D K H; Higgins, G A

2013-10-01

The purpose of the present study was twofold. First to characterize endpoints distinct to the reflexive responses to sensory stimuli typically used in neuropathic pain models. A second aim was to evaluate two clinically approved drugs carbamazepine (Tegretol) and pregabalin (Lyrica) against these endpoints with the purpose to backtranslate from the clinical to preclinical setting. The selected neuropathic pain model was the spared nerve injury (SNI) model and the endpoints were burrowing and measures of paw posture in Sprague Dawley rats. As previously described, SNI surgery produced a robust heightened sensitivity to tactile and thermal (cold) stimuli. SNI surgery also produced robust decreases in burrowing and affected multiple measures of paw position. There was no correlation between magnitude of change in burrowing and sensory allodynia within SNI operated rats. Pregabalin (10-30 mg/kg IP) produced a reliable reversal of both tactile and cold allodynia and also the burrowing deficit, with minimal effect on neurological function evaluated using rotorod, beam walking and open field activity. Pregabalin did not affect any measure of paw position. Pharmacokinetic studies conducted in satellite animals identified plasma levels of pregabalin at the 10 mg/kg IP dose to be equivalent to clinically efficacious levels recorded in neuropathic patients (3-6 μg/ml). In contrast carbamazepine (10-60 mg/kg IP) had only a very modest effect against a reflexive (tactile) measure, and no effect against the burrowing deficit. Carbamazepine also affected various measures of neurological function, complicating interpretation of the reflexive measure. Measurement of burrowing appears to detect a behavioural deficit associated with the SNI model, that may be attenuated by pregabalin but not carbamazepine. Overall the present findings support an advantage of pregabalin over carbamazepine in terms of both efficacy and tolerability which is consistent with clinical experience. The inclusion of additional endpoints beyond traditional reflexive behaviours further supports the value of rodent neuropathic pain models, such as the SNI, as behavioural assays to detect new chemical entities to treat this pain condition. Copyright © 2013 Elsevier Ltd. All rights reserved.

Mapping the distribution of the main host for plague in a complex landscape in Kazakhstan: An object-based approach using SPOT-5 XS, Landsat 7 ETM+, SRTM and multiple Random Forests

NASA Astrophysics Data System (ADS)

Wilschut, L. I.; Addink, E. A.; Heesterbeek, J. A. P.; Dubyanskiy, V. M.; Davis, S. A.; Laudisoit, A.; Begon, M.; Burdelov, L. A.; Atshabar, B. B.; de Jong, S. M.

2013-08-01

Plague is a zoonotic infectious disease present in great gerbil populations in Kazakhstan. Infectious disease dynamics are influenced by the spatial distribution of the carriers (hosts) of the disease. The great gerbil, the main host in our study area, lives in burrows, which can be recognized on high resolution satellite imagery. In this study, using earth observation data at various spatial scales, we map the spatial distribution of burrows in a semi-desert landscape. The study area consists of various landscape types. To evaluate whether identification of burrows by classification is possible in these landscape types, the study area was subdivided into eight landscape units, on the basis of Landsat 7 ETM+ derived Tasselled Cap Greenness and Brightness, and SRTM derived standard deviation in elevation. In the field, 904 burrows were mapped. Using two segmented 2.5 m resolution SPOT-5 XS satellite scenes, reference object sets were created. Random Forests were built for both SPOT scenes and used to classify the images. Additionally, a stratified classification was carried out, by building separate Random Forests per landscape unit. Burrows were successfully classified in all landscape units. In the ‘steppe on floodplain’ areas, classification worked best: producer's and user's accuracy in those areas reached 88% and 100%, respectively. In the ‘floodplain’ areas with a more heterogeneous vegetation cover, classification worked least well; there, accuracies were 86 and 58% respectively. Stratified classification improved the results in all landscape units where comparison was possible (four), increasing kappa coefficients by 13, 10, 9 and 1%, respectively. In this study, an innovative stratification method using high- and medium resolution imagery was applied in order to map host distribution on a large spatial scale. The burrow maps we developed will help to detect changes in the distribution of great gerbil populations and, moreover, serve as a unique empirical data set which can be used as input for epidemiological plague models. This is an important step in understanding the dynamics of plague.

Sedimentary and chemostratigraphic record of climatic cycles in Lower Pliensbachian marl-limestone platform successions of Asturias (North Spain)

NASA Astrophysics Data System (ADS)

Bádenas, Beatriz; Aurell, Marc; Armendáriz, Maider; Rosales, Idoia; García-Ramos, José Carlos; Piñuela, Laura

2012-12-01

A combined sedimentological, lithological and chemostratigraphical (Mg/Ca, δ13C, δ18O) analysis of the Lower Pliensbachian marl-limestone platform successions exposed along the Asturias coastline (northern Spain) has resulted in the characterization of high-frequency cycles. The highest-order sedimentary cycles (i.e. elementary cycles) are centimeter- to deciemeter-thick alternations of bioclastic and muddy laminated/burrowed facies, which do not match the marl-limestone couplets. They encompass three sedimentary stages: deposition from storm-density currents (bioclastic facies), dominant lateral advection of continental terrigenous mud accumulated on to an oxygen-deficient seafloor (laminated facies), and recovery of bottom oxygenation involving the burrowing of laminated sediments (burrowed facies). The close match between the number of elementary cycles recorded during the Jamesoni Subzone in Asturias and Yorkshire (Northern England) gives support to the idea of the influence of a regional climatic factor (i.e. millennial-scale cyclicity). Decimeter- to meter-scale cycles formed by bundles of elementary cycles are thought to record orbitally driven climatic changes (precession or obliquity, depending on the time calibration considered). Lower hemicycles of bundles are dominated by marls/calcareous mudstones, with decreasing burrowing and eventual preservation of laminated facies. They formed during humid periods, which controlled an increase in freshwater and terrigenous input to the platform and quasi-estuarine circulation promoting bottom-anoxia. Upper hemicycles of bundles are dominated by burrowed and bioclastic limestones, thought to be formed under arid conditions with anti-estuarine circulation and an increase of shallow carbonate production and offshore resedimentation. Chemostratigraphic data from belemnites recorded in the muddy laminated and burrowed facies indicate that significant concomitant shifts in δ13C and δ18O occurred during the lower hemicycles of bundles (i.e., humid periods). Isotopic shifts are interpreted as reflecting changes in the balance between the proximity of the terrestrial sources, the local incursion of deeper cooler waters, the storage of organic matter within sediments, and the re-cycling of organic matter, due to long-term relative sea-level rise.

The role of burrowing sponges in bioerosion.

PubMed

Rützler, Klaus

1975-09-01

Among the large number of limestone-eroding organisms, sponges, mainly of the family Clinonidae are of special interest because of their efficient means of substratum penetration by cellular etching and because they release characteristically shaped calcium carbonate chips which can be detected in the mud-size fraction of many sediments. Identifiable trace fossils and sediments are of great ecological and paleoecological significance.As new data on the excavating mechanism have become available, the questions of burrowing rates and sediment production have gained importance. Extrapolation from shortterm experiments (under 6 months) on substrate invasion are inconclusive because of high initial penetration rates resulting from mechanical stimulation and lack of competition. New experiments show that the rate curve flattens after 6 months and that optimum longterm erosion of CaCO 3 does not exceed 700 mg m -2 year -1 (Cliona lampa and C. aprica). Substrate limitations and competition will further reduce this rate.By monitoring the production of CaCO 3 chips by Cliona lampa, it was possible to link activity patterns to certain environmental factors. Mechanical stimuli, high light intensity, strong currents and, possibly, low temperature seem to accelerate the burrowing process. Sponge-generated chips can make up over 40% of coral mud when deposited in the current shadow of the reef framework.Using transect counts and sponge area-biomass conversion factors, the mean abundance of burrowing sponges on the Bermuda platform could be calculated. On suitable hard bottom substrates it averages 16 g dry weight per m 2 . From this value the burrowing potential of sponges can be estimated as 256 g CaCO 3 per m 2 substrate per year. Since 97-98% of the eroded limestone remains in particulate form, the contribution of fine sediments can amount to 250 g m -2 year -1 .Attention is called to the fact that erosion rates by burrowers can not directly be compared with those of borers or scrapers. The former are intermittent and their activities are affected by environmental and biological interactions, while activities of the latter are rather constant and guided by the need for food.

The Distribution and Occurrence of Acholoë squamosa(Polychaeta: Polynoidae) a Commensal with the Burrowing Starfish Astropecten irregularis(Echinodermata: Asteroidea)

NASA Astrophysics Data System (ADS)

Freeman, S. M.; Richardson, C. A.; Seed, R.

1998-07-01

The distribution and abundance of Acholoë squamosa, a commensal with the burrowing starfish Astropecten irregularis, at 17 sites off the western and south-western coasts of the British Isles are described. A total of 4329 Astropectenand 3362 Acholoëwere examined. Population density of Astropectenranged from 5 to 592 individuals ha -1with higher densities typically associated with finer-grained sandy or muddy sediments. There was considerable inter-site variability in colonization rates with maximum colonization approaching 90%. The occurrence of Acholoëwas negatively correlated with the modal arm size of the host population and with water depth, factors which were themselves significantly correlated. Most adult worms occurred in the ambulacral grooves, and worms were sometimes observed with their head and anterior body region inside the mouth of the host, presumably feeding on stomach contents. Marked seasonal trends in abundance of the Astropectenpopulation were not accompanied by any comparable changes in the levels of colonization by Acholoë. Never more than one adult worm (i.e. >15 mm in length) occurred on the same starfish, indicating that intra-specific factors may control the distribution of Acholoë; multiple colonization comprised a single adult worm with up to three juveniles (i.e. worms <15 mm). In late autumn and late spring to early summer, newly recruited Acholoëwere found between the inferomarginal plates of the host where they were afforded protection by the over-arching ossicle spines. The sex ratio appeared to be strongly biased (20:1) towards females.

Plutonium, americium, and uranium in blow-sand mounds of safety-shot sites at the Nevada Test Site and the Tonopah Test Range

DOE Office of Scientific and Technical Information (OSTI.GOV)

Essington, E.H.; Gilbert, R.O.; Wireman, D.L.

Blow-sand mounds or miniature sand dunes and mounds created by burrowing activities of animals were investigated by the Nevada Applied Ecology Group (NAEG) to determine the influence of mounds on plutonium, americium, and uranium distributions and inventories in areas of the Nevada Test Site and Tonopah Test Range. Those radioactive elements were added to the environment as a result of safety experiments of nuclear devices. Two studies were conducted. The first was to estimate the vertical distribution of americium in the blow-sand mounds and in the desert pavement surrounding the mounds. The second was to estimate the amount or concentrationmore » of the radioactive materials accumulated in the mound relative to the desert pavement. Five mound types were identified in which plutonium, americium, and uranium concentrations were measured: grass, shrub, complex, animal, and diffuse. The mount top (that portion above the surrounding land surface datum), the mound bottom (that portion below the mound to a depth of 5 cm below the surrounding land surface datum), and soil from the immediate area surrounding the mound were compared separately to determine if the radioactive elements had concentrated in the mounds. Results of the studies indicate that the mounds exhibit higher concentrations of plutonium, americium, and uranium than the immediate surrounding soil. The type of mound does not appear to have influenced the amount of the radioactive material found in the mound except for the animal mounds where the burrowing activities appear to have obliterated distribution patterns.« less

Model Integration for Real-Time Flood Forecasting Inundation Mapping for Nashville Tributaries

NASA Astrophysics Data System (ADS)

Charley, W.; Moran, B.; LaRosa, J.

2012-12-01

In May of 2010, between 14 and 19 inches of rain fell on the Nashville metro area in two days, quickly overwhelming tributaries to the Cumberland River and causing wide-spread, serious flooding. Tractor-trailers and houses were seen floating down Mill Creek, a primary tributary in the south eastern area of Nashville. Twenty-six people died and over 2 billion dollars in damage occurred as a result of the flood. Since that time, several other significant rainfall events have occurred in the area. Emergency responders were unable to deliver aid or preventive measures to areas under threat of flooding (or under water) in time to reduce damages because they could not identify those areas far enough in advance of the floods. Nashville Metro Water, the National Weather Service, the US Geological Survey and the US Army Corps of Engineers established a joint venture to seek ways to better forecast short-term flood events in the region. One component of this effort was a pilot project to compute and display real time inundation maps for Mill Creek, a 108 square-mile basin to the south east of Nashville. HEC-RTS (Real-Time Simulation) was used to assimilate and integrate the hydrologic model HEC-HMS with the hydraulics model HEC-RAS and the inundation mapping program HEC-RAS Mapper. The USGS, along with the other agencies, installed additional precipitation and flow/stage gages in the area. Measurements are recorded every 5-30 minutes and are posted on the USGS NWIS database, which are downloaded by HEC-RTS. Using this data in combination with QPFs (Quantitative Precipitation Forecasts) from the NWS, HEC-RTS applies HEC-HMS and HEC-RAS to estimate current and forecast stage hydrographs. The peak stages are read by HEC-RAS Mapper to compute inundation depths for 6 by 6 foot grid cells. HEC-RTS displays the inundation on a high resolution MrSid aerial photo, along with subbasin boundary, street and various other layers. When a user zooms in and "mouses" over a cell, the inundation depth for that cell is displayed as a tool-tip. This procedure for real-time inundation mapping provides a relatively accurate depiction of water depths throughout the basin, as it is computed using the temporal and spatial distribution of rainfall that has actually occurred and will compute depths based on forecasted rainfall. In addition, the HEC-RAS hydraulics model can be modified as the event is occurring to represent changes in the stream channels, such as obstructions at bridges. This paper covers the procedure used and provides results and images from the integrated models for various precipitation scenarios.

Long-term population dynamics of a managed burrowing owl colony

USGS Publications Warehouse

Barclay, John H.; Korfanta, Nicole M.; Kauffman, Matthew J.

2011-01-01

We analyzed the population dynamics of a burrowing owl (Athene cunicularia) colony at Mineta San Jose International Airport in San Jose, California, USA from 1990-2007. This colony was managed by using artificial burrows to reduce the occurrence of nesting owls along runways and within major airport improvement projects during the study period. We estimated annual reproduction in natural and artificial burrows and age-specific survival rates with mark-recapture techniques, and we estimated the relative contribution of these vital rates to population dynamics using a life table response experiment. The breeding colony showed 2 distinct periods of change: high population growth from 7 nesting pairs in 1991 to 40 pairs in 2002 and population decline to 17 pairs in 2007. Reproduction was highly variable: annual nesting success (pairs that raised =1 young) averaged 79% and ranged from 36% to 100%, whereas fecundity averaged 3.36 juveniles/pair and ranged from 1.43 juveniles/pair to 4.54 juveniles/pair. We estimated annual adult survival at 0.710 during the period of colony increase from 1996 to 2001 and 0.465 during decline from 2002 to 2007, but there was no change in annual survival of juveniles between the 2 time periods. Long-term population growth rate (lambda) estimated from average vital rates was lambdaa=1.072 with lambdai=1.288 during colony increase and lambdad=0.921 (DELTA lambda=0.368) during decline. A life table response experiment showed that change in adult survival rate during increasing and declining phases explained more than twice the variation in growth rate than other vital rates. Our findings suggest that management and conservation of declining burrowing owl populations should address factors that influence adult survival.

Trace fossils revealed through x-radiography in facies analysis of Smackover Formation, southwest Alabama

DOE Office of Scientific and Technical Information (OSTI.GOV)

Esposito, R.A.; King, D.T. Jr.

The use of x-radiography has been applied to slabbed cores of Jurassic Smackover limestones from southwestern Alabama to enhance the complete petrologic description of the rocks. Through x-radiography, trace fossils have been revealed in what would otherwise appear to be homogeneous rock. In these biogenic structures, organic material, partly fecal in origin, is concentrated as infill packing in actively filled burrows. A microreducing environment within the burrow results in the mineralization by finely disseminated FeS/sub 2/. The density difference between FeS/sub 2/, which has a high absorption coefficient, and the surrounding calcium carbonate highlights the burrows in the x-radiographs. Thismore » characteristic burrow mineralization is shown well in the Smackover where a Zoophycus-Thalassinoides trace-fossil assemblage has been identified. Zoophycus, a feeding structure, is characterized by concave-upward traces with whorled peaks, and is best seen in slabs cut perpendicular to bedding. Thalassinoides is a dwelling structure characterized by a boxwork burrow system and is best seen in cores cut parallel to bedding. This assemblage is restricted to facies that is laterally persistent throughout the Smackover in most of Escambia County, Alabama. This trace-fossil assemblage is found in an oolitic pelletal packstone. This unit is overlain by an oolitic grainstone and is stratigraphically above a sparsely fossiliferous, laminated wackestone and packstone. Trace fossils in this horizon are abundant, but the traces are not found in stratigraphically adjacent lithofacies. Detecting these otherwise unseen trace fossils by x-radiography assisted the paleoenvironmental interpretation of this depositional facies as a low-energy subwave-base carbonate-shelf deposit.« less

Resource selection by black-footed ferrets in South Dakota and Montana

USGS Publications Warehouse

Jachowski, D.S.; Millspaugh, J.J.; Biggins, D.E.; Livieri, T.M.; Matchett, M.R.; Rittenhouse, C.D.

2011-01-01

The black-footed ferret (Mustela nigripes), once extinct in the wild, remains one of the most critically endangered mammals in North America despite 18 years of reintroduction attempts. Because black-footed ferrets are specialized predators of prairie dogs (Cynomys sp.), a better understanding of how black-footed ferrets select resources might provide insight into how best to identify and manage reintroduction sites. We monitored ferret resource selection at two reintroduction sites with different densities of prairie dog populations-one that contained a high density of prairie dogs (Conata Basin, South Dakota) and one that was lower (UL Bend, Montana). We evaluated support for hypotheses about ferret resource selection as related to the distribution of active burrows used by black-tailed prairie dogs (Cynomys ludovicianus), interactions between ferrets, and habitat edge effects. We found support for all three factors within both populations; however, they affected ferret resource selection differently at each site. Ferrets at Conata Basin tended to select areas with high prairie dog burrow density, closer to the colony edge, and that overlapped other ferret ranges. In contrast, ferrets at UL Bend tended not to select areas of high active prairie dog burrow density, avoided areas close to edge habitat, and females avoided areas occupied by other ferrets. The differences observed between the two sites might be best explained by prairie dog densities, which were higher at Conata Basin (119.3 active burrows per ha) than at UL Bend (44.4 active burrows per ha). Given the positive growth of ferret populations at Conata Basin, management that increases the density of prairie dogs might enhance ferret success within natural areas. To achieve long-term recovery of ferrets in the wild, conservationists should increasingly work across and outside natural area boundaries to increase prairie dog populations.

Implementation and test of a coastal forecasting system for wind waves in the Mediterranean Sea

NASA Astrophysics Data System (ADS)

Inghilesi, R.; Catini, F.; Orasi, A.; Corsini, S.

2010-09-01

A coastal forecasting system has been implemented in order to provide a coverage of the whole Mediterranean Sea and of several enclosed coastal areas as well. The problem is to achieve a good definition of the small scale coastal processes which affect the propagation of waves toward the shores while retaining the possibility of selecting any of the possible coastal areas in the whole Mediterranean Sea. The system is built on a very high resolution parallel implementation of the WAM and SWAN models, one-way chain-nested in key areas. The system will shortly be part of the ISPRA SIMM forecasting system which has been operative since 2001. The SIMM sistem makes available the high resolution wind fields (0.1/0.1 deg) used in the coastal system. The coastal system is being tested on several Italian coastal areas (Ligurian Sea, Lower Tyrrenian Sea, Sicily Channel, Lower Adriatic Sea) in order to optimise the numerics of the coastal processes and to verify the results in shallow waters and complex bathymetries. The results of the comparison between hindcast and buoy data in very shallow (14m depth) and deep sea (150m depth) will be shown for several episodes in the upper Tyrrenian Sea.

Forecasting magma-chamber rupture at Santorini volcano, Greece

PubMed Central

Browning, John; Drymoni, Kyriaki; Gudmundsson, Agust

2015-01-01

How much magma needs to be added to a shallow magma chamber to cause rupture, dyke injection, and a potential eruption? Models that yield reliable answers to this question are needed in order to facilitate eruption forecasting. Development of a long-lived shallow magma chamber requires periodic influx of magmas from a parental body at depth. This redistribution process does not necessarily cause an eruption but produces a net volume change that can be measured geodetically by inversion techniques. Using continuum-mechanics and fracture-mechanics principles, we calculate the amount of magma contained at shallow depth beneath Santorini volcano, Greece. We demonstrate through structural analysis of dykes exposed within the Santorini caldera, previously published data on the volume of recent eruptions, and geodetic measurements of the 2011–2012 unrest period, that the measured 0.02% increase in volume of Santorini’s shallow magma chamber was associated with magmatic excess pressure increase of around 1.1 MPa. This excess pressure was high enough to bring the chamber roof close to rupture and dyke injection. For volcanoes with known typical extrusion and intrusion (dyke) volumes, the new methodology presented here makes it possible to forecast the conditions for magma-chamber failure and dyke injection at any geodetically well-monitored volcano. PMID:26507183

Geology and biology of Oceanographer submarine canyon.

USGS Publications Warehouse

Valentine, P.C.; Uzmann, J.R.; Cooper, R.A.

1980-01-01

Santonian beds more than 100 m thick are the oldest rocks collected from the canyon. Quaternary silty clay veneers the canyon walls in many places and is commonly burrowed by benthic organisms that cause extensive erosion of the canyon walls, especially in the depth zone (100-1300 m) inhabited by the crabs Geryon and Cancer. Bioerosion is minimal on high, near-vertical cliffs of sedimentary rock, in areas of continual sediment movement, and where the sea floor is paved by gravel. A thin layer of rippled, unconsolidated silt and sand is commonly present on the canyon walls and in the axis. Shelf sediments are transported from Georges Bank over the E rim and in the Canyon by the SW drift and storm currents; tidal currents and internal waves move the sediment downcanyon along the walls and axis.- from Authors

Ctenocheloides almeidai sp. nov., a new ghost shrimp from Brazil (Decapoda, Ctenochelidae).

PubMed

Anker, Arthur; Pachelle, Paulo P G

2013-02-13

A second species of the ctenochelid genus Ctenocheloides Anker, 2010 is described based on a single female specimen collected on a rocky reef in front of Maceió, Alagoas, northeastern Brazil. Ctenocheloides almeidai sp. nov. represents the first record of Ctenocheloides in the Atlantic Ocean. The new species differs from C. attenboroughi Anker, 2010, the type species from Madagascar, in the number of teeth in the crista dentata of the third maxilliped, the proportions and armature of the major and minor chelipeds, and several other characters. The microhabitats of C. almeidai sp. nov. and C. attenboroughi are remarkably similar: both species inhabit burrows made in rock crevices cemented by compact clay-like silt, at very shallow depths (1-1.5 m). A key to the western Atlantic species of the family Ctenochelidae is provided.

Three-dimensional variational assimilation of MODIS aerosol optical depth: Implementation and application to a dust storm over East Asia

NASA Astrophysics Data System (ADS)

Liu, Zhiquan; Liu, Quanhua; Lin, Hui-Chuan; Schwartz, Craig S.; Lee, Yen-Huei; Wang, Tijian

2011-12-01

Assimilation of the Moderate Resolution Imaging Spectroradiometer (MODIS) total aerosol optical depth (AOD) retrieval products (at 550 nm wavelength) from both Terra and Aqua satellites have been developed within the National Centers for Environmental Prediction (NCEP) Gridpoint Statistical Interpolation (GSI) three-dimensional variational (3DVAR) data assimilation system. This newly developed algorithm allows, in a one-step procedure, the analysis of 3-D mass concentration of 14 aerosol variables from the Goddard Chemistry Aerosol Radiation and Transport (GOCART) module. The Community Radiative Transfer Model (CRTM) was extended to calculate AOD using GOCART aerosol variables as input. Both the AOD forward model and corresponding Jacobian model were developed within the CRTM and used in the 3DVAR minimization algorithm to compute the AOD cost function and its gradient with respect to 3-D aerosol mass concentration. The impact of MODIS AOD data assimilation was demonstrated by application to a dust storm from 17 to 24 March 2010 over East Asia. The aerosol analyses initialized Weather Research and Forecasting/Chemistry (WRF/Chem) model forecasts. Results indicate that assimilating MODIS AOD substantially improves aerosol analyses and subsequent forecasts when compared to MODIS AOD, independent AOD observations from the Aerosol Robotic Network (AERONET) and Cloud-Aerosol Lidar with Orthogonal Polarization (CALIOP) instrument, and surface PM10 (particulate matter with diameters less than 10 μm) observations. The newly developed AOD data assimilation system can serve as a tool to improve simulations of dust storms and general air quality analyses and forecasts.

Air quality real-time forecast before and during the G-20 ...

EPA Pesticide Factsheets

The 2016 G-20 Hangzhou summit, the eleventh annual meeting of the G-20 heads of government, will be held during September 3-5, 2016 in Hangzhou, China. For a successful summit, it is important to ensure good air quality. To achieve this goal, governments of Hangzhou and its surrounding provinces will enforce a series of emission reductions, such as a forced closure of major highly-polluting industries and also limiting car and construction emissions in the cities and surroundings during the 2016 G-20 Hangzhou summit. Air quality forecast systems consisting of the two-way coupled WRF-CMAQ and online-coupled WRF-Chem have been applied to forecast air quality in Hangzhou regularly. This study will present the results of real-time forecasts of air quality over eastern China using 12-km grid spacing and for Hangzhou area using 4-km grid spacing with these two modeling systems using emission inventories for base and 2016 G-20 scenarios before and during the 2016 G-20 Hangzhou summit. Evaluations of models’ performance for both cases for PM2.5, PM10, O3, SO2, NO2, CO, air quality index (AQI), and aerosol optical depth (AOD) are carried out by comparing them with observations obtained from satellites, such as MODIS, and surface monitoring networks. The effects of the emission reduction efforts on expected air quality improvements during the2016 G-20 Hangzhou summit will be studied in depth. This study provides insights on how air quality will be improved by a plan

Impact of the springtime Himalayan-Tibetan Plateau on the onset on the Indian summer monsoon in coupled forecasts

NASA Astrophysics Data System (ADS)

Orsolini, Yvan; Senan, Retish; Weisheimer, Antje; Vitart, Frederic; Balsamo, Gianpaolo; Doblas-Reyes, Francisco; Stockdale, Timothy; Dutra, Emanuel

2016-04-01

The springtime snowpack over the Himalayan-Tibetan Plateau (HTP) region has long been suggested to be an influential factor on the onset of the Indian summer monsoon. In the frame of the SPECS project, we have assessed the impact of realistic snow initialization in springtime over HTP on the onset of the Indian summer monsoon. We examine a suite of coupled ocean-atmosphere 4-month ensemble reforecasts made at the European Centre for Medium-Range Weather Forecasts (ECMWF), using the Seasonal Forecasting System 4. The reforecasts were initialized on 1 April every year for the period 1981-2010. In these seasonal reforecasts, the snow is initialized "realistically" with ERA-Interim/Land Reanalysis. In addition, we carried out an additional set of forecasts, identical in all aspects except that initial conditions for snow-related land surface variables over the HTP region are randomized. We show that high snow depth over HTP influences the meridional tropospheric temperature gradient reversal that marks the monsoon onset. Composite difference based on a normalized HTP snow index reveal that, in high snow years, (i) the onset is delayed by about 8 days, and (ii) negative precipitation anomalies and warm surface conditions prevail over India. We show that about half of this delay can be attributed to the realistic initialization of snow over the HTP region. We further demonstrate that high April snow depths over HTP are not uniquely influenced by either the El Nino-Southern Oscillation, the Indian Ocean Dipole or the North Atlantic Oscillation.

Historical macrobenthic community assemblages in the Avilés Canyon, N Iberian Shelf: Baseline biodiversity information for a marine protected area

NASA Astrophysics Data System (ADS)

Louzao, Maite; Anadón, Nuria; Arrontes, Julio; Álvarez-Claudio, Consuelo; Fuente, Dulce María; Ocharan, Francisco; Anadón, Araceli; Acuña, José Luis

2010-02-01

Deep-sea ecosystems are highly diverse, and European countries seek to protect these environments by identifying conservation targets. One of these is the Avilés Canyon, southern Bay of Biscay, NE Atlantic, Spain. We present the first analysis of historical benthic communities (1987-1988) of this canyon ecosystem, which is a valuable source of biodiversity baseline information. We found 810 taxa divided in five main macrobenthic assemblages, showing a highly diverse benthic community. Bathymetry was the major structuring agent of benthic community, separating shallow (assemblages I and II, 31 to 307 m depth) from deep stations (assemblages III, IV and V, 198 to 1400 m depth). Especially diverse was assemblage IV, located at the easternmost part of the continental slope (378-1100 m depth) where we found reef-forming corals Lophelia pertusa and Madrepora oculata. These and other communities (sea-pens [Order Pennatulacea, Phylum Cnidaria] and burrowing macrofauna) represent key habitats in NE Atlantic continental slopes, which are currently threatened. The present dataset has produced the most comprehensive assessment of diversity in this area to date, focusing on the taxonomic groups which may best reflect the health of the marine ecosystem and supporting previous studies which indicate that the continental slope of the southern Bay of Biscay hosts key benthic habitats.

Final Environmental Assessment for the Bridge Replacement and Scour Protection Measures at Avon Park Air Force Range, Florida

DTIC Science & Technology

2012-03-01

stipulated in the permit. Potential indigo snake refugia: gopher tortoise burrows , active or inactive, other holes, ground cavities, and root hollows...holes, cavities, and snake refugia other than gopher tortoise burrows will be inspected each morning before planned site manipulation of a particular...University 1999 Years Experience: 12 Larry McLain Operational Transportation Manager and Range Maintenance Manager Clarence Morgan Rangeland

Flea abundance, diversity, and plague in Gunnison's prairie dogs (Cynomys gunnisoni) and their burrows in montane grasslands in northern New Mexico

Treesearch

Megan M. Friggens; Robert R. Parmenter; Michael Boyden; Paulette L. Ford; Kenneth Gage; Paul Keim

2010-01-01

Plague, a flea-transmitted infectious disease caused by the bacterium Yersinia pestis, is a primary threat to the persistence of prairie dog populations (Cynomys spp.). We conducted a 3-yr survey (2004-2006) of fleas from Gunnison's prairie dogs (Cynomys gunnisoni) and their burrows in montane grasslands in Valles Caldera National Preserve in New Mexico. Our...

Behavioural evidence of male volatile pheromones in the sex-role reversed wolf spiders Allocosa brasiliensis and Allocosa alticeps

NASA Astrophysics Data System (ADS)

Aisenberg, Anita; Baruffaldi, Luciana; González, Macarena

2010-01-01

The use of chemical signals in a sexual context is widespread in the animal kingdom. Most studies in spiders report the use of female pheromones that attract potential sexual partners. Allocosa brasiliensis and Allocosa alticeps are two burrowing wolf spiders that show sex-role reversal. Females locate male burrows and initiate courtship before males perform any detectable visual or vibratory signal. So, females of these species would be detecting chemical or mechanical cues left by males. Our objective was to explore the potential for male pheromones to play a role in mate detection in A. brasiliensis and A. alticeps. We designed two experiments. In Experiment 1, we tested the occurrence of male contact pheromones by evaluating female courtship when exposed to empty burrows constructed by males or females (control). In Experiment 2, we tested the existence of male volatile pheromones by evaluating female behaviour when exposed to artificial burrows connected to tubes containing males, females or empty tubes (control). Our results suggest the occurrence of male volatile pheromones that trigger female courtship in both Allocosa species. The sex-role reversal postulated for these wolf spiders could be driving the consequent reversal in typical pheromone-emitter and detector roles expected for spiders.

Ecological role of the giant root-rat (Tachyoryctes macrocephalus) in the Afroalpine ecosystem.

PubMed

Šklíba, Jan; Vlasatá, Tereza; Lövy, Matěj; Hrouzková, Ema; Meheretu, Yonas; Sillero-Zubiri, Claudio; Šumbera, Radim

2017-07-01

Rodents with prevailing subterranean activity usually play an important role in the ecosystems of which they are a part due to the combined effect of herbivory and soil perturbation. This is the case for the giant root-rat Tachyoryctes macrocephalus endemic to the Afroalpine ecosystem of the Bale Mountains, Ethiopia. We studied the impact of root-rats on various ecosystem features within a 3.5-ha study locality dominated by Alchemilla pasture, which represents an optimal habitat for this species, in 2 periods of a year. The root-rats altered plant species composition, reducing the dominant forb, Alchemilla abyssinica, while enhancing Salvia merjame and a few other species, and reduced vegetation cover, but not the fresh plant biomass. Where burrows were abandoned by root-rats, other rodents took them over and A. abyssinica increased again. Root-rat burrowing created small-scale heterogeneity in soil compactness due to the backfilling of some unused burrow segments. Less compacted soil tended to be rich in nutrients, including carbon, nitrogen and phosphorus, which likely affected the plant growth on sites where the vegetation has been reduced as a result of root-rat foraging and burrowing. © 2016 International Society of Zoological Sciences, Institute of Zoology/Chinese Academy of Sciences and John Wiley & Sons Australia, Ltd.

The principle of ‘maximum energy dissipation’: a novel thermodynamic perspective on rapid water flow in connected soil structures

PubMed Central

Zehe, Erwin; Blume, Theresa; Blöschl, Günter

2010-01-01

Preferential flow in biological soil structures is of key importance for infiltration and soil water flow at a range of scales. In the present study, we treat soil water flow as a dissipative process in an open non-equilibrium thermodynamic system, to better understand this key process. We define the chemical potential and Helmholtz free energy based on soil physical quantities, parametrize a physically based hydrological model based on field data and simulate the evolution of Helmholtz free energy in a cohesive soil with different populations of worm burrows for a range of rainfall scenarios. The simulations suggest that flow in connected worm burrows allows a more efficient redistribution of water within the soil, which implies a more efficient dissipation of free energy/higher production of entropy. There is additional evidence that the spatial pattern of worm burrow density at the hillslope scale is a major control of energy dissipation. The pattern typically found in the study is more efficient in dissipating energy/producing entropy than other patterns. This is because upslope run-off accumulates and infiltrates via the worm burrows into the dry soil in the lower part of the hillslope, which results in an overall more efficient dissipation of free energy. PMID:20368256

Detections of Yersinia pestis East of the Known Distribution of Active Plague in the United States.

PubMed

Mize, Erica L; Britten, Hugh B

2016-02-01

We examined fleas collected from black-tailed prairie dog (Cynomys ludovicianus) burrows from 2009 through 2011 in five national park units east of the known distribution of active plague across the northern Great Plains for the presence of Yersinia pestis. Across all national park units, Oropsylla tuberculata and Oropsylla hirsuta were the most common fleas collected from prairie dog burrows, 42.4% and 56.9%, respectively, of the 3964 fleas collected from burrow swabbing. Using a nested PCR assay, we detected 200 Y. pestis-positive fleas from 3117 assays. In total, 6.4% of assayed fleas were Y. pestis positive and 13.9% of prairie dog burrows swabbed contained Y. pestis-positive fleas. Evidence of the presence of Y. pestis was observed at all national park units except Devils Tower National Monument in Wyoming. We detected the presence of Y. pestis without large die-offs, i.e., enzootic sylvatic plague, east of the known distribution of active plague and near the eastern edge of the present distribution of black-tailed prairie dogs. This study, in combination with previous work suggests that sylvatic plague likely occurs across the range of black-tailed prairie dogs and should now be treated as endemic across this range.

Regional and Seasonal Diet of the Western Burrowing Owl in South-Central Nevada

DOE Office of Scientific and Technical Information (OSTI.GOV)

Derek B. Hall, Paul D. Greger, Jeffrey R. Rosier

2009-04-01

We examined diets of Western Burrowing Owls (Athene cunicularia hypugaea) based on contents of pellets and large prey remains collected year-round at burrows in each of the 3 regions in south central Nevada (Mojave Desert, Great Basin Desert, and Transition region). The most common prey items, based on percent frequency of occurrence, were crickets and grasshoppers, beetles, rodents, sun spiders, and scorpions. The most common vertebrate prey was kangaroo rats (Dipodomys spp.). True bugs (Hemiptera), scorpions, and western harvest mice (Reithrodontomys megalotis) occurred most frequently in pellets from the Great Basin Desert region. Kangaroo rats (Dipodomys spp.) and pocket micemore » (Perognathinae) were the most important vertebrate prey items in the Transition and Mojave Desert regions, respectively. Frequency of occurrence of any invertebrate prey was high (>80%) in samples year-round but dropped in winter samples, with scorpions and sun spiders exhibiting the steepest declines. Frequency of occurrence of any vertebrate prey peaked in spring samples, was intermediate for winter and summer samples, and was lowest in fall samples. With the possible exception of selecting for western harvest mice in the Great Basin Desert region, Western Burrowing Owls in our study appeared to be opportunistic foragers with a generalist feeding strategy.« less

Origin of tropical American burrowing reptiles by transatlantic rafting.

PubMed

Vidal, Nicolas; Azvolinsky, Anna; Cruaud, Corinne; Hedges, S Blair

2008-02-23

Populations of terrestrial or freshwater taxa that are separated by oceans can be explained by either oceanic dispersal or fragmentation of a previously contiguous land mass. Amphisbaenians, the worm lizards (approx. 165 species), are small squamate reptiles that are uniquely adapted to a burrowing lifestyle and inhabit Africa, South America, Caribbean Islands, North America, Europe and the Middle East. All but a few species are limbless and they rarely leave their subterranean burrows. Given their peculiar habits, the distribution of amphisbaenians has been assumed to be primarily the result of two land-mass fragmentation events: the split of the supercontinent Pangaea starting 200 Myr ago, separating species on the northern land mass (Laurasia) from those on the southern land mass (Gondwana), and the split of South America from Africa 100 Myr ago. Here we show with molecular evidence that oceanic dispersal-on floating islands-played a more prominent role, and that amphisbaenians crossed the Atlantic Ocean in the Eocene (40 Myr ago) resulting in a tropical American radiation representing one-half of all known amphisbaenian species. Until now, only four or five transatlantic dispersal events were known in terrestrial vertebrates. Significantly, this is the first such dispersal event to involve a group that burrows, an unexpected lifestyle for an oceanic disperser.

A burrowing frog from the late Paleocene of Mongolia uncovers a deep history of spadefoot toads (Pelobatoidea) in East Asia.

PubMed

Chen, Jianye; Bever, Gaberiel S; Yi, Hong-Yu; Norell, Mark A

2016-01-11

Fossils are indispensible in understanding the evolutionary origins of the modern fauna. Crown-group spadefoot toads (Anura: Pelobatoidea) are the best-known fossorial frog clade to inhabit arid environments, with species utilizing a characteristic bony spade on their foot for burrowing. Endemic to the Northern Hemisphere, they are distributed across the Holarctic except East Asia. Here we report a rare fossil of a crown-group spadefoot toad from the late Paleocene of Mongolia. The phylogenetic analysis using both morphological and molecular information recovered this Asian fossil inside the modern North American pelobatoid clade Scaphiopodidae. The presence of a spade and the phylogenetic position of the new fossil frog strongly support its burrowing behavior. The late Paleocene age and other information suggestive of a mild climate cast doubt on the conventional assertion that burrowing evolved as an adaptation to aridity in spadefoot toads. Temporally and geographically, the new fossil provides the earliest record of Scaphiopodidae worldwide, and the only member of the group in Asia. Quantitative biogeographic analysis suggests that Scaphiopodidae, despite originating in North America, dispersed into East Asia via Beringia in the Early Cenozoic. The absence of spadefoot toads in East Asia today is a result of extinction.

Ascaulocardium armatum (Morton 1833), new genus (Late Cretaceous): the ultimate variation on the bivalve paradigm.

USGS Publications Warehouse

Pojeta, J.; Sohl, N.F.

1987-01-01

Cretaceous clavagellid pelecypods are a poorly known group, and have previously received little study. Ascaulocardium armatum is conchologically the most complex burrowing pelecypod known. From the study of living clavagellids, it is possible to interpret the various tubes extending outward from the adventitious crypt of A. armatum as devices for hydraulic burrowing and deposit feeding. The conchologically complex A. armatum occurs near the beginning of the history of the Clavagellidae, and does not seem to have given rise to any younger species. Ascaulocardium armatum is known only from the Upper Cretaceous rocks (Santonian-Maastrichtian) of the east Gulf and Atlantic Coastal Plains of the United States of America, as is probably the genus Ascaulocardium. All known Cretaceous clavagellids are burrowing species having a free right valve, and this is the ancestral mode of life of the Clavagellidae. Clavagellids that have a boring habit are a more recent evolutionary development, as are burrowing species having both juvenile valves cemented to the crypt. Clavagellids probably evolved from Jurassic-Early Cretaceous pholadomyids. Almost all Cretaceous clavagellids occur outside the Tethyan Zoogeographic Realm; this distribution is in marked contrast to the modern distribution of the family. Living species mostly inhabit clear, shallow seas in subtropical to tropical shelf areas. - Authors

Linking Seismicity at Depth to the Mechanics of a Lava Dome Failure - a Forecasting Approach

NASA Astrophysics Data System (ADS)

Salvage, R. O.; Neuberg, J. W.; Murphy, W.

2014-12-01

Soufriere Hills volcano (SHV), Montserrat has been in a state of ongoing unrest since 1995. Prior to eruptions, an increase in the number of seismic events has been observed. We use the Material Failure Law (MFL) (Voight, 1988) to investigate how an accelerating number of low frequency seismic events are related to the timing of a large scale dome collapse in June 1997. We show that although the forecasted timing of a dome collapse may coincide with the known timing, the accuracy of the application of the MFL to the data is poor. Using a cross correlation technique we show how characterising seismicity into similar waveform "families'' allows us to focus on a single process at depth and improve the reliability of our forecast. A number of families are investigated to assess their relative importance. We show that despite the timing of a forecasted dome collapse ranging between several hours of the known timing of collapse, each of the families produces a better forecast in terms of fit to the seismic acceleration data than when using all low frequency seismicity. In addition, we investigate the stability of such families between major dome collapses (1997 and 2003), assessing their potential for use in real-time forecasting. Initial application of Grey's Incidence Analysis suggests that a key parameter influencing the potential for a large scale slumping on the dome of SHV is the rate of low frequency seismicity associated with magma movement and dome growth. We undertook numerical modelling of an andesitic dome with a hydrothermally altered layer down to 800m. The geometry of the dome is based on SHV prior to the collapse of 2003. We show that a critical instability is reached once slope angles exceed 25°, corresponding to a summit height of just over 1100m a.s.l.. The geometry of failure is in close agreement with the identified failure plane suggesting that the input mechanical properties are broadly consistent with reality. We are therefore able to compare different failure geometries based on edifice geomorphology and determine a Factor of Safety associated with such scenarios. This modelling would be extremely useful in a holistic forecasting approach within a volcanic environment. Reference: Voight, B. (1988). A method for prediction of volcanic eruptions. Nature, 332: 125-130.

Deep-sea bacterial communities in sediments and guts of deposit-feeding holothurians in Portuguese canyons (NE Atlantic)

NASA Astrophysics Data System (ADS)

Amaro, Teresa; Witte, Harry; Herndl, Gerhard J.; Cunha, Marina R.; Billett, David S. M.

2009-10-01

Deposit-feeding holothurians often dominate the megafauna in bathyal deep-sea settings, in terms of both abundance and biomass. Molpadia musculus is particularly abundant at about 3400 m depth in the Nazaré Canyon on the NE Atlantic Continental Margin. However, these high abundances are unusual for burrowing species at this depth. The objective of this research was to understand the reasons of the massive occurrence of these molpadiid holothurians in the Nazaré Canyon. To address this question we investigated possible trophic interactions with bacteria at sites where the organic content of the sediment was different (Setúbal and Cascais Canyons, NE Atlantic Continental Margin). The molecular fingerprinting technique of Denaturing Gradient Gel Electrophoresis (DGGE) with band sequencing, combined with non-metric multi-dimensional scaling and statistical analyses, was used to compare the bacterial community diversity in canyon sediments and holothurian gut contents. Our results suggest that M. musculus does not need to develop a specialised gut bacterial community to aid digestion where the sediment is rich in organic matter (Nazaré Canyon); in contrast, such a community may be developed where the sediment is poorer in organic matter (Cascais Canyon).

Modeling Climate-Change Effects on Snake Range Extents for Military Land Management

DTIC Science & Technology

2013-09-01

Kirankumar Topudurti and the Director was Dr. Ilker Adiguzel. Special appreciation is owed to Fort Stewart, GA personnel John Macey, Larry Carlile, and...fatalities by intentional killing and motor-vehicle encounters, and loss of tortoise burrows (used as winter shelter) through both dwindling tortoise...numbers and gassing of burrows by rattlesnake hunters (US Fish and Wildlife Service 1982, Stevenson et al. 2003). Since it has a very large home

Intraspecific variation in reproductive traits of burrowing owls

USGS Publications Warehouse

Conway, Meaghan; Nadeau, Christopher P.; Conway, Courtney J.

2012-01-01

Reviews of hatching asynchrony in birds recommended more studies on intraspecific variation in the extent of hatching asynchrony. We examined intraspecific variation in clutch size, laying chronology, onset of incubation, incubation period, and hatching asynchrony in burrowing owls (Athene cunicularia) in the Imperial Valley of California. Mean clutch size was 7.4 eggs and owls averaged 0.5 eggs laid per day. Females varied considerably in laying interval and onset of incubation (range = 1st to 9th egg in the clutch). The mean incubation period was 21.9 days. Hatching interval also varied greatly among females (x = 0.8, range 0.1-2.0 days between successively hatched eggs). Past burrowing owl studies have largely overlooked the substantial intraspecific variation in these traits or have reported estimates that differ from ours. Future studies designed to identify the environmental factors that explain the large intraspecific variation in these traits will likely provide insights into the constraints on local abundance.

Urban flood early warning systems: approaches to hydrometeorological forecasting and communicating risk

NASA Astrophysics Data System (ADS)

Cranston, Michael; Speight, Linda; Maxey, Richard; Tavendale, Amy; Buchanan, Peter

2015-04-01

One of the main challenges for the flood forecasting community remains the provision of reliable early warnings of surface (or pluvial) flooding. The Scottish Flood Forecasting Service has been developing approaches for forecasting the risk of surface water flooding including capitalising on the latest developments in quantitative precipitation forecasting from the Met Office. A probabilistic Heavy Rainfall Alert decision support tool helps operational forecasters assess the likelihood of surface water flooding against regional rainfall depth-duration estimates from MOGREPS-UK linked to historical short-duration flooding in Scotland. The surface water flood risk is communicated through the daily Flood Guidance Statement to emergency responders. A more recent development is an innovative risk-based hydrometeorological approach that links 24-hour ensemble rainfall forecasts through a hydrological model (Grid-to-Grid) to a library of impact assessments (Speight et al., 2015). The early warning tool - FEWS Glasgow - presents the risk of flooding to people, property and transport across a 1km grid over the city of Glasgow with a lead time of 24 hours. Communication of the risk was presented in a bespoke surface water flood forecast product designed based on emergency responder requirements and trialled during the 2014 Commonwealth Games in Glasgow. The development of new approaches to surface water flood forecasting are leading to improved methods of communicating the risk and better performance in early warning with a reduction in false alarm rates with summer flood guidance in 2014 (67%) compared to 2013 (81%) - although verification of instances of surface water flooding remains difficult. However the introduction of more demanding hydrometeorological capabilities with associated greater levels of uncertainty does lead to an increased demand on operational flood forecasting skills and resources. Speight, L., Cole, S.J., Moore, R.J., Pierce, C., Wright, B., Golding, B., Cranston, M., Tavendale, A., Ghimire, S., and Dhondia, J. (2015) Developing surface water flood forecasting capabilities in Scotland: an operational pilot for the 2014 Commonwealth Games in Glasgow. Journal of Flood Risk Management, In Press.

On mechanisms triggering the levees failure along the Foenna stream on 1st January 2006 and which caused the flooding in the urban area of Sinalunga, Tuscany Region (Italy). A case study

NASA Astrophysics Data System (ADS)

Camici, Stefania; Moramarco, Tommaso; Brocca, Luca; Melone, Florisa; Lapenna, Vincenzo; Perrone, Angela; Loperte, Antonio

2010-05-01

On 1st January 2006, during an ordinary flood event, a levee failure along the Foenna stream caused the flooding in the urban area of Sinalunga, a small town located in Tuscany region (Italy). The event was monitored by a public agency with the responsibility for the control and maintenance of the natural channel networks. Long time before of flooding, people living in the surrounding area of the stream blamed the presence of wild animals and of numerous burrows along the levees. Although the numerous actions of maintenance along the levees mainly for removing the burrows, a levee seepage occurred during that flood. The presence of an outflow located on the downstream face, almost 2 m below the levee top, caused the spurt of brown water denoting the presence of sediment erosion. On the upstream face of levee, a little hole of about 30 cm at the same height of the outflow was discovered. Although the agency workers tried to close the hole by using appropriate blankets, in short time the top of the levee subsided and the overtopping flow caused a trapezoidal breach typical for an earth-fill embankment. The formation of breach was so fast that in a little more of one hour the urban area near to the Foenna stream was flooded causing high economic damages. Mechanisms triggered the levees failure are the object of this work. The analysis of the event has been first addressed to assess the state of-fact of levees conditions along the Foenna stream, thus to understand how much the activity of wild animals, in particular that of porcupine, may have affected the hydraulic safety of the embankment. At the purpose, after the event, topographical surveys of cross sections have been done along with tomographic surveys by geoelectric technique for investigating the possible presence, besides of burrows, also of tunnels dug into the levees by animals. Then, the analysis of hydrometeorological conditions of the event has allowed to better understand the evolution of the flood and if its magnitude was able to affect the hydraulic holding of levees. Finally, the seepage vulnerability of these levees has been also assessed to address their hydraulic safety applying two models based on a steady and unsteady infiltration, respectively. Based on the obtained results, the following findings can be drawn. 1) The levees failure near the Sinalunga urban area is certainly due to the presence of the porcupine burrow at middle height of upstream face of levee that has addressed the flow into the embankment and then triggered the seepage phenomenon. 2) The works of the maintenance finalized to the closure of the burrows carried out before of the flood event were necessary but not sufficient to prevent the failure of levees. 3) To prevent the failure due to burrows presence, the levees maintenance should have been addressed through both the closure of burrows and the capture of wild animals; if this action had been done for the Foenna stream then the probability of failure would have been truly low. This last aspect has been also inferred through geoelectrical tomography surveys that showed the possible presence of at least two tunnels along both faces of levees, so emphasizing as the various closure of burrows made in the past by maintenance agency were totally useless. 4) The seepage vulnerability analysis has shown that levees might be to risk of failure for floods whose durations are consistent with the ones might occur in the Foenna basin. However, for this particular event the levees failure can be only ascribed to wild animals activity, seeing that the seepage was caused by a burrow hole.

Burrowing by Sailfin Catfish (Pterygoplichthys sp.): A Potential Cause of Erosion in Disturbed Environments

DTIC Science & Technology

2014-03-01

originates at a large levee, which was built to create a water retention (to control excess water) and water bird management area. The levee and canal...each sample was dried in stainless steel trays in a 60 °C convection oven . Two methods of quantitative analysis were performed to determine the...ERDC/TN ANSRP-14-1 March 2014 Approved for public release; distribution is unlimited. Burrowing by Sailfin Catfish (Pterygoplichthys sp.): A

Euschoengastia suzukii (Acari: Trombiculidae): A new species of chigger mite collected from soil samples in the nest burrows of streaked shearwater in Japan.

PubMed

Takahashi, Mamoru; Fukaya, Hajime; Takahashi, Hisae

2005-07-01

Euschoengastia suzukii Takahashi, Fukaya & Takahashi is described and illustrated. The type material was collected from soil samples in the nest burrows of the sea bird streaked shearwater, Calonectris leucomelas (Temminck), living on Mikurajima Island in Tokyo; Oomorijima Island, Oki, Shimane Prefecture; and Awashima Island, Niigata Prefecture, in Japan, indicating that C. leucomelas is the main parasitic host of E. suzukii new species.

Bioturbating animals control the mobility of redox-sensitive trace elements in organic-rich mudstone

DOE Office of Scientific and Technical Information (OSTI.GOV)

Harazim, Dario; McIlroy, Duncan; Edwards, Nicholas P.

Bioturbating animals modify the original mineralogy, porosity, organic content, and fabric of mud, thus affecting the burial diagenetic pathways of potential hydrocarbon source, seal, and reservoir rocks. High-sensitivity, synchrotron rapid scanning X-ray fluorescence elemental mapping reveals that producers of phycosiphoniform burrows systematically partition redox-sensitive trace elements (i.e., Fe, V, Cr, Mn, Co, Ni, Cu, and As) in fine-grained siliciclastic rocks. Systematic differences in organic carbon content (total organic carbon >1.5 wt%) and quality (Δ 13C org~0.6‰) are measured between the burrow core and host sediment. The relative enrichment of redox-sensitive elements in the burrow core does not correlate with significantmore » neo-formation of early diagenetic pyrite (via trace metal pyritization), but is best explained by physical concentration of clay- and silt-sized components. A measured loss (~–15%) of the large-ionic-radius elements Sr and Ba from both burrow halo and core is most likely associated with the release of Sr and Ba to pore waters during biological ( in vivo) weathering of silt- to clay-sized lithic components and feldspar. In conclusion, this newly documented effect has significant potential to inform the interpretation of geochemical proxy and rock property data, particularly from shales, where elemental analyses are commonly employed to predict reservoir quality and support paleoenvironmental analysis.« less

Bioturbating animals control the mobility of redox-sensitive trace elements in organic-rich mudstone

DOE PAGES

Harazim, Dario; McIlroy, Duncan; Edwards, Nicholas P.; ...

2015-10-07

Bioturbating animals modify the original mineralogy, porosity, organic content, and fabric of mud, thus affecting the burial diagenetic pathways of potential hydrocarbon source, seal, and reservoir rocks. High-sensitivity, synchrotron rapid scanning X-ray fluorescence elemental mapping reveals that producers of phycosiphoniform burrows systematically partition redox-sensitive trace elements (i.e., Fe, V, Cr, Mn, Co, Ni, Cu, and As) in fine-grained siliciclastic rocks. Systematic differences in organic carbon content (total organic carbon >1.5 wt%) and quality (Δ 13C org~0.6‰) are measured between the burrow core and host sediment. The relative enrichment of redox-sensitive elements in the burrow core does not correlate with significantmore » neo-formation of early diagenetic pyrite (via trace metal pyritization), but is best explained by physical concentration of clay- and silt-sized components. A measured loss (~–15%) of the large-ionic-radius elements Sr and Ba from both burrow halo and core is most likely associated with the release of Sr and Ba to pore waters during biological ( in vivo) weathering of silt- to clay-sized lithic components and feldspar. In conclusion, this newly documented effect has significant potential to inform the interpretation of geochemical proxy and rock property data, particularly from shales, where elemental analyses are commonly employed to predict reservoir quality and support paleoenvironmental analysis.« less

Burrowing, byssus, and biomarkers: behavioral and physiological indicators of sublethal thermal stress in freshwater mussels (Unionidae)

USGS Publications Warehouse

Archambault, Jennifer M.; Cope, W. Gregory; Kwak, Thomas J.

2013-01-01

Recent research has elucidated the acute lethal effects of elevated water temperatures to glochidia (larvae), juvenile, and adult life stages of freshwater mussels (Order Unionida), but few studies have focused on sublethal effects of thermal stress. We evaluated the sublethal effects of elevated temperature on burrowing behavior and byssus production in juveniles, and on enzymatic biomarkers of stress in adults in acute (96 h) laboratory experiments in sediment, with two acclimation temperatures (22 and 27 °C) and two experimental water levels (watered and dewatered) as proxies for flow regime. Increasing temperature significantly reduced burrowing in all five species tested, and the dewatered treatment (a proxy for drought conditions) reduced burrowing in all but Amblema plicata. Production of byssal threads was affected most drastically by flow regime, with the probability of byssus presence reduced by 93–99% in the dewatered treatment, compared to the watered treatment (a proxy for low flow conditions); increasing temperature alone reduced byssus by 18–35%. Alanine aminotransferase and aspartate aminotransferase were significantly affected by treatment temperature in the 27 °C acclimation, watered test (p = 0.04 and 0.02, respectively). Our results are important in the context of climate change, because stream temperature and flow are expected to change with increasing air temperature and altered precipitation patterns.

Incidence of plastic fragments among burrow-nesting seabird colonies on offshore islands in northern New Zealand.

PubMed

Buxton, Rachel T; Currey, Caitlin A; Lyver, Philip O'B; Jones, Christopher J

2013-09-15

Marine plastic pollution is ubiquitous throughout the world's oceans, and has been found in high concentrations in oceanic gyres of both the northern and southern hemispheres. The number of studies demonstrating plastic debris at seabird colonies and plastic ingestion by adult seabirds has increased over the past few decades. Despite the recent discovery of a large aggregation of plastic debris in the South Pacific subtropical gyre, the incidence of plastics at seabird colonies in New Zealand is unknown. Between 2011 and 2012 we surveyed six offshore islands on the northeast coast of New Zealand's North Island for burrow-nesting seabird colonies and the presence of plastic fragments. We found non-research related plastic fragments (0.031 pieces/m(2)) on one island only, Ohinau, within dense flesh-footed shearwater (Puffinus carneipes) colonies. On Ohinau, we found a linear relationship between burrow density and plastic density, with 3.5 times more breeding burrows in areas with plastic fragments found. From these data we conclude that plastic ingestion is a potentially a serious issue for flesh-footed shearwaters in New Zealand. Although these results do not rule out plastic ingestion by other species, they suggest the need for further research on the relationship between New Zealand's pelagic seabirds and marine plastic pollution. Copyright © 2013 Elsevier Ltd. All rights reserved.

Occupancy rates of primary burrowing crayfish in natural and disturbed large river bottomlands

USGS Publications Warehouse

Loughman, Zachary J.; Welsh, Stuart A.; Simon, Thomas P.

2012-01-01

Among crayfish, primary burrowing species are the least understood ecologically. Many primary burrowing crayfish inhabit floodplains where forested landscapes have been fragmented by agricultural, industrial, or residential uses. In this study, site occupancy rates (ψ) were modeled for two primary burrowing crayfish, Fallicambarus fodiens (Cottle, 1863) and Cambarus thomai Jezerinac, 1993, from Ohio and Kanawha river floodplains in West Virginia, U.S.A. Fallicambarus fodiens is one of West Virginia’s rarest crayfish, while C. thomai is prevalent in most wetlands along both river floodplains. Occupancy rate modeling incorporated four environmental covariates (forest age, soil type, tree frequency, and land use). Based on presence/absence data, forests with tree ages >100 years (ΔQAICc = 0) and sites with loam soils (ΔQAICc = 1.80) were most likely to harbor F. fodiens populations. For C. thomai, several models were supported owing to model selection uncertainty, but those with the land use covariate had more total model weight (total w i = 0 . 54 ) than all other covariate models. Cambarus thomai rarely occupied industrial/agricultural sites, but were often present in forested and residential sites. Although the influence of covariates on site occupancy differed between species, both taxa readily utilized mature forested habitats when available. Conservation actions for F. fodiens and C. thomai should focus on preserving forested tracts along large river floodplains

Fiddler crabs facilitate Spartina alterniflora growth, mitigating periwinkle overgrazing of marsh habitat.

PubMed

Gittman, Rachel K; Keller, Danielle A

2013-12-01

Ecologists have long been interested in identifying and testing factors that drive top-down or bottom-up regulation of communities. Most studies have focused on factors that directly exert top-down (e.g., grazing) or bottom-up (e.g., nutrient availability) control on primary production. For example, recent studies in salt marshes have demonstrated that fronts of Littoraria irrorata periwinkles can overgraze Spartina alterniflora and convert marsh to mudflat. The importance of indirect, bottom-up effects, particularly facilitation, in enhancing primary production has also recently been explored. Previous field studies separately revealed that fiddler crabs, which burrow to depths of more than 30 cm, can oxygenate marsh sediments and redistribute nutrients, thereby relieving the stress of anoxia and enhancing S. alterniflora growth. However, to our knowledge, no studies to date have explored how nontrophic facilitators can mediate top-down effects (i.e., grazing) on primary-producer biomass. We conducted a field study testing whether fiddler crabs can facilitate S. alterniflora growth sufficiently to mitigate overgrazing by periwinkles and thus sustain S. alterniflora marsh. As inferred from contrasts to experimental plots lacking periwinkles and fiddler crabs, periwinkles alone exerted top-down control of total aboveground biomass and net growth of S. alterniflora. When fiddler crabs were included, they counteracted the effects of periwinkles on net S. alterniflora growth. Sediment oxygen levels were greater and S. alterniflora belowground biomass was lower where fiddler crabs were present, implying that fiddler crab burrowing enhanced S. alterniflora growth. Consequently, in the stressful interior S. alterniflora marsh, where subsurface soil anoxia is widespread, fiddler crab facilitation can mitigate top-down control by periwinkles and can limit and possibly prevent loss of biogenically structured marsh habitat and its ecosystem services.

Trace-fossil assemblages with a new ichnogenus in "spotted"

NASA Astrophysics Data System (ADS)

Šimo, Vladimír; Tomašových, Adam

2013-10-01

Highly-bioturbated "spotted" limestones and marls (Fleckenmergel-Fleckenkalk facies) of the Early Jurassic, which were deposited in broad and recurrent deep-shelf habitats of the Northern Tethys, are characterized by rare benthic carbonate-producing macroinvertebrates. To address this paradox, we analyse trace-fossil assemblages in a ~85 m-thick succession of Pliensbachian spotted deposits (Zliechov Basin, Western Carpathians). They are dominated by infaunal and semi-infaunal deposit-feeders, with 9 ichnogenera and pyritized tubes of the semi-infaunal foraminifer Bathysiphon, being dominated by Chondrites, Lamellaeichnus (new ichnogenus), and Teichichnus. Lamellaeichnus, represented by a horizontal basal cylindrical burrow and an upper row of stacked convex-up gutters, was produced by a mobile deposit-feeder inhabiting shallow tiers because it is crossed by most other trace fossils. We show that the spotty appearance of the deposits is generated by a mixture of (1) dark, organic-rich shallow- and deep-tier traces (TOC = 0.16-0.36), and (2) light grey, organic-poor mottled or structurless sediment (TOC = 0.09-0.22). The higher TOC in shallow-tier burrows of Lamellaeichnus demonstrates that uppermost sediment layers were affected by poor redox cycling. Such conditions imply a limited mixed-layer depth and inefficient nutrient recycling conditioned by hypoxic bottom-waters, allowed by poor circulation and high sedimentation rates in depocenters of the Zliechov Basin. Hypoxic conditions are further supported by (1) dominance of trace-fossils produced by infaunal deposit feeders, (2) high abundance of hypoxiatolerant agglutinated foraminifer Bathysiphon, and (3) high abundance of Chondrites with ~0.5 mm-sized branches. Oxygen-deficient bottom-conditions can thus simultaneously explain the rarity of benthic carbonate-producing macroinvertebrates and high standing abundance of tolerant soft-shell and agglutinated organisms in spotted deposits.

Seasonal Pattern of Batrachochytrium dendrobatidis Infection and Mortality in Lithobates areolatus: Affirmation of Vredenburg's “10,000 Zoospore Rule”

PubMed Central

Kinney, Vanessa C.; Heemeyer, Jennifer L.; Pessier, Allan P.; Lannoo, Michael J.

2011-01-01

To fully comprehend chytridiomycosis, the amphibian disease caused by the chytrid fungus Batrachochytrium dendrobatidis (Bd), it is essential to understand how Bd affects amphibians throughout their remarkable range of life histories. Crawfish Frogs (Lithobates areolatus) are a typical North American pond-breeding species that forms explosive spring breeding aggregations in seasonal and semipermanent wetlands. But unlike most species, when not breeding Crawfish Frogs usually live singly—in nearly total isolation from conspecifics—and obligately in burrows dug by crayfish. Crayfish burrows penetrate the water table, and therefore offer Crawfish Frogs a second, permanent aquatic habitat when not breeding. Over the course of two years we sampled for the presence of Bd in Crawfish Frog adults. Sampling was conducted seasonally, as animals moved from post-winter emergence through breeding migrations, then back into upland burrow habitats. During our study, 53% of Crawfish Frog breeding adults tested positive for Bd in at least one sample; 27% entered breeding wetlands Bd positive; 46% exited wetlands Bd positive. Five emigrating Crawfish Frogs (12%) developed chytridiomycosis and died. In contrast, all 25 adult frogs sampled while occupying upland crayfish burrows during the summer tested Bd negative. One percent of postmetamorphic juveniles sampled were Bd positive. Zoospore equivalents/swab ranged from 0.8 to 24,436; five out of eight frogs with zoospore equivalents near or >10,000 are known to have died. In summary, Bd infection rates in Crawfish Frog populations ratchet up from near zero during the summer to over 25% following overwintering; rates then nearly double again during and just after breeding—when mortality occurs—before the infection wanes during the summer. Bd-negative postmetamorphic juveniles may not be exposed again to this pathogen until they take up residence in crayfish burrows, or until their first breeding, some years later. PMID:21423745

Wetting and drying of soil in response to precipitation: Data analysis, modeling, and forecasting

USGS Publications Warehouse

Basak, Aniruddha; Kulkarni, Chinmay; Schmidt, Kevin M.; Mengshoel, Ole

2016-01-01

This paper investigates methods to analyze and forecast soil moisture time series. We extend an existing Antecedent Water Index (AWI) model, which expresses soil moisture as a function of time and rainfall. Unfortunately, the existing AWI model does not forecast effectively for time periods beyond a few hours. To overcome this limitation, we develop a novel AWI-based model. Our model accumulates rainfall over a time interval and can fit a diverse range of wetting and drying curves. In addition, parameters in our model reflect hydrologic redistribution processes of gravity and suction.We validate our models using experimental soil moisture and rainfall time series data collected from steep gradient post-wildfire sites in Southern California, where rapid landscape change was observed in response to small to moderate rain storms. We found that our novel model fits the data for three distinct soil textures, occurring at different depths below the ground surface (5, 15, and 30 cm). Our model also successfully forecasts soil moisture trends, such as drying and wetting rate.

Introduction on the operational storm surge forecasting system in Korea Operational Oceanographic System (KOOS)

NASA Astrophysics Data System (ADS)

Kwon, Jae-Il; Park, Kwang-Soon; Choi, Jung-Woon; Lee, Jong-Chan; Heo, Ki-Young; Kim, Sang-Ik

2017-04-01

During last more than 50 years, 258 typhoons passed and affected the Korean peninsula in terms of high winds, storm surges and extreme waves. In this study we explored the performance of the operational storm surge forecasting system in the Korea Operational Oceanographic System (KOOS) with 8 typhoons from 2010 to 2016. The operation storm surge forecasting system for the typhoon in KOOS is based on 2D depth averaged model with tides and CE (U.S. Army Corps of Engineers) wind model. Two key parameters of CE wind model, the locations of typhoon center and its central atmospheric pressure are based from Korea Meteorological administrative (KMA)'s typhoon information provided from 1 day to 3 hour intervals with the approach of typhoon through the KMA's web-site. For 8 typhoons cases, the overall errors, other performances and analysis such as peak time and surge duration are presented in each case. The most important factor in the storm surge errors in the operational forecasting system is the accuracy of typhoon passage prediction.

Standardized Monitoring Strategies for Burrowing Owls on DoD Installations

DTIC Science & Technology

2006-12-01

cow patties, irrigated pastures are all evidence of livestock. Record N (no) if there is no evidence of livestock. Marmot ? Y Record Y (yes) if...there is any evidence of marmots within a 200m radius of the roadside survey point. Record N (no) if there is no evidence of marmots within 200 m...occupied burrow, (e.g., a lack of whitewash/ feces , pellets, feathers, etc.) on 3 subsequent visits (3-4 days in between) then visit the nest once a week

Radiotelemetry Study of a Desert Tortoise Population: Sand Hill Training Mea, Marine Corps Air Ground Combat Center, Twentynine Palms, California

DTIC Science & Technology

1998-05-01

shallow caliche burrows. Mojave populations differ genetically ( Lamb et al. 1989), morphologically (Weinstein and Berry 1987), in burrow construction...34 Abstract in The Desert Tortoise Council Symposium (1995d), p 92. Lamb , T., J.C. Avise, and J.W. Gibbons, "Phylogeographic Patterns in Mitochondrial...ATTN: STEWS -EL US Army Envr Hygiene Agency ATTN:HSHB-ME 21010 US Army Environmental Center ATTN: SFIM-AEC 21010-5401 Defense Tech Info Center

Statistical earthquake focal mechanism forecasts

NASA Astrophysics Data System (ADS)

Kagan, Yan Y.; Jackson, David D.

2014-04-01

Forecasts of the focal mechanisms of future shallow (depth 0-70 km) earthquakes are important for seismic hazard estimates and Coulomb stress, and other models of earthquake occurrence. Here we report on a high-resolution global forecast of earthquake rate density as a function of location, magnitude and focal mechanism. In previous publications we reported forecasts of 0.5° spatial resolution, covering the latitude range from -75° to +75°, based on the Global Central Moment Tensor earthquake catalogue. In the new forecasts we have improved the spatial resolution to 0.1° and the latitude range from pole to pole. Our focal mechanism estimates require distance-weighted combinations of observed focal mechanisms within 1000 km of each gridpoint. Simultaneously, we calculate an average rotation angle between the forecasted mechanism and all the surrounding mechanisms, using the method of Kagan & Jackson proposed in 1994. This average angle reveals the level of tectonic complexity of a region and indicates the accuracy of the prediction. The procedure becomes problematical where longitude lines are not approximately parallel, and where shallow earthquakes are so sparse that an adequate sample spans very large distances. North or south of 75°, the azimuths of points 1000 km away may vary by about 35°. We solved this problem by calculating focal mechanisms on a plane tangent to the Earth's surface at each forecast point, correcting for the rotation of the longitude lines at the locations of earthquakes included in the averaging. The corrections are negligible between -30° and +30° latitude, but outside that band uncorrected rotations can be significantly off. Improved forecasts at 0.5° and 0.1° resolution are posted at http://eq.ess.ucla.edu/kagan/glob_gcmt_index.html.

Alaska Division of Geological and Geophysical Surveys

Science.gov Websites

Name Title Gabriel Wolken, Ph.D. Program Manager Katreen Wikstrom Jones M.Sc. Geologist Research flood forecasting) rely on a quantitative assessment of distributed snow thickness and stored water . 2015. End-of-winter snow depth variability on glaciers in Alaska. Journal of Geophysical Research

Extending to seasonal scales the current usage of short range weather forecasts and climate projections for water management in Spain

NASA Astrophysics Data System (ADS)

Rodriguez-Camino, Ernesto; Voces, José; Sánchez, Eroteida; Navascues, Beatriz; Pouget, Laurent; Roldan, Tamara; Gómez, Manuel; Cabello, Angels; Comas, Pau; Pastor, Fernando; Concepción García-Gómez, M.°; José Gil, Juan; Gil, Delfina; Galván, Rogelio; Solera, Abel

2016-04-01

This presentation, first, briefly describes the current use of weather forecasts and climate projections delivered by AEMET for water management in Spain. The potential use of seasonal climate predictions for water -in particular dams- management is then discussed more in-depth, using a pilot experience carried out by a multidisciplinary group coordinated by AEMET and DG for Water of Spain. This initiative is being developed in the framework of the national implementation of the GFCS and the European project, EUPORIAS. Among the main components of this experience there are meteorological and hydrological observations, and an empirical seasonal forecasting technique that provides an ensemble of water reservoir inflows. These forecasted inflows feed a prediction model for the dam state that has been adapted for this purpose. The full system is being tested retrospectively, over several decades, for selected water reservoirs located in different Spanish river basins. The assessment includes an objective verification of the probabilistic seasonal forecasts using standard metrics, and the evaluation of the potential social and economic benefits, with special attention to drought and flooding conditions. The methodology of implementation of these seasonal predictions in the decision making process is being developed in close collaboration with final users participating in this pilot experience.

Fennec dust forecast intercomparison over the Sahara in June 2011

NASA Astrophysics Data System (ADS)

Chaboureau, Jean-Pierre; Flamant, Cyrille; Dauhut, Thibaut; Kocha, Cécile; Lafore, Jean-Philippe; Lavaysse, Chistophe; Marnas, Fabien; Mokhtari, Mohamed; Pelon, Jacques; Reinares Martínez, Irene; Schepanski, Kerstin; Tulet, Pierre

2016-06-01

In the framework of the Fennec international programme, a field campaign was conducted in June 2011 over the western Sahara. It led to the first observational data set ever obtained that documents the dynamics, thermodynamics and composition of the Saharan atmospheric boundary layer (SABL) under the influence of the heat low. In support to the aircraft operation, four dust forecasts were run daily at low and high resolutions with convection-parameterizing and convection-permitting models, respectively. The unique airborne and ground-based data sets allowed the first ever intercomparison of dust forecasts over the western Sahara. At monthly scale, large aerosol optical depths (AODs) were forecast over the Sahara, a feature observed by satellite retrievals but with different magnitudes. The AOD intensity was correctly predicted by the high-resolution models, while it was underestimated by the low-resolution models. This was partly because of the generation of strong near-surface wind associated with thunderstorm-related density currents that could only be reproduced by models representing convection explicitly. Such models yield emissions mainly in the afternoon that dominate the total emission over the western fringes of the Adrar des Iforas and the Aïr Mountains in the high-resolution forecasts. Over the western Sahara, where the harmattan contributes up to 80 % of dust emission, all the models were successful in forecasting the deep well-mixed SABL. Some of them, however, missed the large near-surface dust concentration generated by density currents and low-level winds. This feature, observed repeatedly by the airborne lidar, was partly forecast by one high-resolution model only.

Fennec dust forecast intercomparison over the Sahara in June 2011

NASA Astrophysics Data System (ADS)

Chaboureau, J. P.; Flamant, C.; Dauhut, T.; Lafore, J. P.; Lavaysse, C.; Pelon, J.; Schepanski, K.; Tulet, P.

2016-12-01

In the framework of the Fennec international programme, a field campaign was conducted in June 2011 over the western Sahara. It led to the first observational data set ever obtained that documents the dynamics, thermodynam-ics and composition of the Saharan atmospheric boundary layer (SABL) under the influence of the heat low. In support to the aircraft operation, four dust forecasts were run daily at low and high resolutions with convection-parameterizing and convection-permitting models, respectively. The unique airborne and ground-based data sets allowed the first ever intercomparison of dust forecasts over the western Sahara. At monthly scale, large aerosol optical depths (AODs) were forecast over the Sahara, a feature observed by satellite retrievals but with different magnitudes. The AOD intensity was correctly predicted by the high-resolution models, while it was underestimated by the low-resolution models. This was partly because of the generation of strong near-surface wind associated with thunderstorm-related density currents that could only be reproduced by models representing convection explicitly. Such models yield emissions mainly in the afternoon that dominate the total emission over the western fringes of the Adrar des Iforas and the Aïr Mountains in the high-resolution forecasts. Over the western Sahara, where the harmattan contributes up to 80 % of dust emission, all the models were successful in forecasting the deep well-mixed SABL. Some of them, however, missed the large near-surface dust concentration generated by density currents and low-level winds. This feature, observed repeatedly by the airborne lidar, was partly forecast by one high-resolution model only.

Bacterialike (filamentous) structures associated with pyritized burrow linings, Arnheim Formation (Upper Ordovician), southeastern Indiana

DOE Office of Scientific and Technical Information (OSTI.GOV)

Blackwell, W.H.; Martin, A.J.

Much naturally occurring pyritization is biologically mediated, with specific types of bacteria (sulfate reducers) promoting the reactions. Among the criteria required for pyritization in a marine environment are the presence of: (1) interstitial iron ions, (2) a primarily anaerobic (reducing) environment; (3) an organic-rich substrate, and (4) sulfate-reducing bacteria (releasing sulfide). However, the direct connection between pyritization and bacteria (microfloral remains) is difficult to visualize in the fossil record. This study focuses specifically on pyritized burrow linings that occur in strongly bioturbated wackestones from the Arnheim Formation (Cincinnatian Series, Upper Ordovician). Specific reducing microenvironments (i.e. mucoidal burrow linings) were themore » sites of early diagenetic pyritization in otherwise oxygenated, organic-rich sediments. Material examined under both the light and electron microscopes revealed occasional evidence of pyrite associated with filamentous structures. These structures possess a shape and size consistent with certain types of bacteria. This relationship, bacterialike structures with pyrite, may be more common in the fossil record than previously suspected.« less

Impact of elevated levels of CO2 on animal mediated ecosystem function: the modification of sediment nutrient fluxes by burrowing urchins.

PubMed

Widdicombe, S; Beesley, A; Berge, J A; Dashfield, S L; McNeill, C L; Needham, H R; Øxnevad, S

2013-08-30

A mesocosm experiment was conducted to quantify the relationships between the presence and body size of two burrowing heart urchins (Brissopsis lyrifera and Echinocardium cordatum) and rates of sediment nutrient flux. Furthermore, the impact of seawater acidification on these relationships was determined during this 40-day exposure experiment. Using carbon dioxide (CO2) gas, seawater was acidified to pHNBS 7.6, 7.2 or 6.8. Control treatments were maintained in natural seawater (pH≈8.0). Under normocapnic conditions, burrowing urchins were seen to reduce the sediment uptake of nitrite or nitrate whilst enhancing the release of silicate and phosphate. In acidified (hypercapnic) treatments, the biological control of biogeochemical cycles by urchins was significantly affected, probably through the combined impacts of high CO2 on nitrifying bacteria, benthic algae and urchin behaviour. This study highlights the importance of considering biological interactions when predicting the consequences of seawater acidification on ecosystem function. Copyright © 2012 Elsevier Ltd. All rights reserved.

Sidescan sonar as a tool for detection of demersal fish habitats

USGS Publications Warehouse

Able, Kenneth W.; Twichell, David C.; Grimes, Churchill B.; Jones, R. S.

1987-01-01

Sidescan sonar can be an effective tool for the determination of the habitat distribution of commercially important species.  This technique has the advantage of rapidly mapping large areas of the seafloor.  Sidescan images (sonographs) may also help to identify appropriate fishing gears for different types of seafloor or areas to be avoided with certain types of gears.  During the early stages of exploration, verification of sidescan sonar sonographs is critical to successful identification of important habitats.  Tilefishes (Lopholatilus and Caulolatilus) are especially good target species because the construct large burrows in the seafloor or live around boulders, both of which are easily detectable on sonographs.  In some special circumstances the estimates of tilefish burrow densities from sonographs can be used to estimate standing stock. In many localities the burrow and boulder habitats of tilefish are shared with other commercially important species such as American lobsters, Homarus americanus; cusk, Brosme brosme; and ocean pout, Macrozoarces americanus.

Associating sex-biased and seasonal behaviour with contact patterns and transmission risk in Gopherus agassizii

USGS Publications Warehouse

Aiello, Christina M.; Esque, Todd; Nussear, K. E.; Emblidge, P. G.; Hudson, P. J.

2018-01-01

Interactions between wildlife hosts act as transmission routes for directly transmitted pathogens and vary in ways that affect transmission efficiency. Identifying drivers of contact variation can allow both contact inference and estimation of transmission dynamics despite limited data. In desert tortoises, mating strategy, burrow use and seasonal change influence numerous behaviours and likely shape contact patterns. In this study, we ask to what extent tortoise contact behaviour varies between sexes and seasons, and whether space or burrow-use data can be used to infer contact characteristics consistent with those recorded by proximity loggers. We identified sex and season-biased contact behaviour in both wild and captive populations indicative of female-female avoidance and seasonal male mate-seeking behaviour. Space and burrow-use patterns were informative, but did not always predict the extent of sex or seasonal biases on contact. We discuss the implications these findings have for transmission patterns and disease mitigation in tortoise populations.

Allometric shell growth in infaunal burrowing bivalves: examples of the archiheterodonts Claibornicardia paleopatagonica (Ihering, 1903) and Crassatella kokeni Ihering, 1899.

PubMed

Perez, Damián Eduardo; Santelli, María Belén

2018-01-01

We present two cases of study of ontogenetic allometry in outlines of bivalves using longitudinal data, a rarity among fossils, based on the preserved post-larval record of shells. The examples are two infaunal burrowing bivalves of the southern South America, Claibornicardia paleopatagonica (Archiheterodonta: Carditidae) (early Paleocene) and Crassatella kokeni (Archiheterodonta: Crassatellidae) (late Oligocene-late Miocene). Outline analyses were conducted using a geometric morphometric approach (Elliptic Fourier Analysis), obtaining successive outlines from shells' growth lines, which were used to reconstruct ontogenetic trajectories. In both taxa, ontogenetic changes are characterized by the presence of positive allometry in the extension of posterior end, resulting in elongated adult shells. This particular allometric growth is known in others infaunal burrowing bivalves ( Claibornicardia alticostata and some Spissatella species) and the resulting adult morphology is present in representatives of several groups (e.g., Carditidae, Crassatellidae, Veneridae, Trigoniidae). Taxonomic, ecological and evolutionary implications of this allometric growth pattern are discussed.

Micron Scale Mapping and Depth Profiling of Organic Compounds in Geologic Material: Femtosecond - Laser Desorption Laser Postionization - Mass Spectrometry (fs-LDPI-MS)

NASA Astrophysics Data System (ADS)

Pasterski, M. J.; Barry, G. E.; Hanley, L.; Kenig, F. P. H.

2017-12-01

One of the major challenges within the field of organic geochemistry is to determine whether an observed biomarker signature is indigenous (emplaced during sedimentation), non-indigenous (emplaced after sedimentation) or contaminant (incorporated during sampling, storage or analysis). The challenge of determining the mode of emplacement of an observed biomarker signature is accentuated in analyses of Precambrian samples, and may be an issue upon Mars sample return. Current geochemical techniques (e.g. gas chromatography-mass spectrometry, GC-MS, GC×GC-MS) can determine the composition and structure of the organic constituents of a sample. However, the preparatory steps necessary prior to GC-MS analysis (sample crushing, solvent extraction) make it impossible to determine the precise spatial distribution of organic molecules within rocks and sediments. Here, we will present data from the first set of micron (2-5 μm width × 8 μm depth) resolution MS-images of organic compounds in geologic material. Fs-LDPI-MS was utilized to create MS-images of organic compounds in four samples: (1) an Antarctic igneous dike used as a sample blank; (2) a 93 million year-old (Ma) burrowed carbonate collected near Pueblo, CO; (3) a 164 Ma organic rich mudstone collected in central England; and (4) a 2680 Ma metasediment collected in Timmins, ON, Canada. Prior to this study, all samples had been analyzed via GC-MS to determine the bulk hydrocarbon composition. For this study, thick sections (70-100 μm thick) were prepared in-house using custom-designed clean preparation techniques. Petrographic maps of the thick sections were created to highlight geologic features such as burrows (sample 2), particulate organic matter (sample 3) and hydrothermal veins (sample 4). Fs-LDPI-MS analysis was performed on the mapped thick sections. MS-images of targeted organic compounds were created, and the MS-images were overlain with the petrographic maps to determine the spatial distribution of the organic compounds relative to host rock features. We were able to use the spatial distribution of the targeted organic compounds to unambiguously characterize them as either indigenous, non-indigenous or contaminants. This technique is applicable to the analysis of both Precambrian samples and extraterrestrial material.

Geophysical investigations at the Paleolitic site Grotta delle Veneri near Parabita (Lecce, Italy)

NASA Astrophysics Data System (ADS)

Carrozzo, M. T.; Leucci, G.; Negri, S.; Nuzzo, L.

2003-04-01

The human presence in Apulia (southern Italy) is documented since 80.000 years before present. In 1966 near Parabita (Lecce, Italy) in a cave subsequently named "Grotta delle Veneri" human remains belonging to Homo Sapiens Neanderthalensis (Neanderthal) and Homo Sapiens-Sapiens (Cro-Magnon) were recovered together with two small statues of pregnant women ("Veneri") referable to 12.000--10.000 b.C. The local Archaeological Superintendence was interested in assessing the possibility to reconstruct by means of geophysical methods the planimetric position of the cave and further development of its burrows beyond those accessible to speleologists and reported in the underground topographic survey. Both electromagnetic (EM) and electric methods were tested using Ground Penetrating Radar (GPR) with 200 and 500 MHz antennas, GEM300 multi-frequency EM induction device and 2D Electrical Resistivity Tomography (ERT). Despite the rough surface and the presence of numerous obstacles (trees, stone walls and stone piles) limiting the accessible survey area and often preventing a good ground-coupling, the GPR survey successfully located the top of the karstic cave and identified zones of high density of diffraction hyperbolas, interpreted as highly fractured and karstified limestone, in a layer ranging from about 2 m to 6 m below ground. Zones characterised by high density of diffractions due to presence of voids were found also outside the known development of the cave. By means of the GEM 300, both in-phase and quadrature components of the induced EM signal were simultaneously collected at 8 frequencies, from 2025 to 19975 Hz, respectively related to the magnetic susceptibility and apparent conductivity of the soil down to a depth decreasing as the frequency increase. A presumable low contrast in the sought parameter between the highly fractured rock and karstic voids or refilled cavities as well as the presence of metallic debris on the ground allowed a difficult identification of only few anomalies in the EM map probably linked, by surface evidences, to underground interesting features. More interesting were the ETR results, revealing the presence of a high-resistive body (>2000 Ωm) in the same depth layer evidenced by GPR, with very high-resistive localised anomalies in good correspondence of known burrows and, more importantly, also in external zones, especially to the east of the cave.

Ensemble Data Assimilation of Photovoltaic Power Information in the Convection-permitting High-Resolution Model COSMO-DE

NASA Astrophysics Data System (ADS)

Declair, Stefan; Saint-Drenan, Yves-Marie; Potthast, Roland

2017-04-01

Determining the amount of weather dependent renewable energy is a demanding task for transmission system operators (TSOs) and wind and photovoltaic (PV) prediction errors require the use of reserve power, which generate costs and can - in extreme cases - endanger the security of supply. In the project EWeLiNE funded by the German government, the German Weather Service and the Fraunhofer Institute on Wind Energy and Energy System Technology develop innovative weather- and power forecasting models and tools for grid integration of weather dependent renewable energy. The key part in energy prediction process chains is the numerical weather prediction (NWP) system. Irradiation forecasts from NWP systems are however subject to several sources of error. For PV power prediction, weaknesses of the NWP model to correctly forecast i.e. low stratus, absorption of condensed water or aerosol optical depths are the main sources of errors. Inaccurate radiation schemes (i.e. the two-stream parametrization) are also known as a deficit of NWP systems with regard to irradiation forecast. To mitigate errors like these, latest observations can be used in a pre-processing technique called data assimilation (DA). In DA, not only the initial fields are provided, but the model is also synchronized with reality - the observations - and hence forecast errors are reduced. Besides conventional observation networks like radiosondes, synoptic observations or air reports of wind, pressure and humidity, the number of observations measuring meteorological information indirectly by means of remote sensing such as satellite radiances, radar reflectivities or GPS slant delays strongly increases. Numerous PV plants installed in Germany potentially represent a dense meteorological network assessing irradiation through their power measurements. Forecast accuracy may thus be enhanced by extending the observations in the assimilation by this new source of information. PV power plants can provide information on clouds, aerosol optical depth or low stratus in terms of remote sensing: the power output is strongly dependent on perturbations along the slant between sun position and PV panel. Since these data are not limited to the vertical column above or below the detector, it may thus complement satellite data and compensate weaknesses in the radiation scheme. In this contribution, the used DA technique (Local Ensemble Transform Kalman Filter, LETKF) is shortly sketched. Furthermore, the computation of the model power equivalents is described and first results are presented and discussed.

Effects of extreme climatic events on small-scale spatial patterns: a 20-year study of the distribution of a desert spider.

PubMed

Birkhofer, Klaus; Henschel, Joh; Lubin, Yael

2012-11-01

Individuals of most animal species are non-randomly distributed in space. Extreme climatic events are often ignored as potential drivers of distribution patterns, and the role of such events is difficult to assess. Seothyra henscheli (Araneae, Eresidae) is a sedentary spider found in the Namib dunes in Namibia. The spider constructs a sticky-edged silk web on the sand surface, connected to a vertical, silk-lined burrow. Above-ground web structures can be damaged by strong winds or heavy rainfall, and during dispersal spiders are susceptible to environmental extremes. Locations of burrows were mapped in three field sites in 16 out of 20 years from 1987 to 2007, and these grid-based data were used to identify the relationship between spatial patterns, climatic extremes and sampling year. According to Morisita's index, individuals had an aggregated distribution in most years and field sites, and Geary's C suggests clustering up to scales of 2 m. Individuals were more aggregated in years with high maximum wind speed and low annual precipitation. Our results suggest that clustering is a temporally stable property of populations that holds even under fluctuating burrow densities. Climatic extremes, however, affect the intensity of clustering behaviour: individuals seem to be better protected in field sites with many conspecific neighbours. We suggest that burrow-site selection is driven at least partly by conspecific cuing, and this behaviour may protect populations from collapse during extreme climatic events.

Pacific lamprey (Entosphenus tridentatus) ammocoetes exposed to contaminated Portland Harbor sediments: Method development and effects on survival, growth, and behavior

USGS Publications Warehouse

Unrein, Julia R.; Morris, Jeffrey M.; Chitwood, Rob S.; Lipton, Joshua; Peers, Jennifer; van de Wetering, Stan; Schreck, Carl B.

2016-01-01

Many anthropogenic disturbances have contributed to the decline of Pacific lampreys (Entosphenus tridentatus), but potential negative effects of contaminants on lampreys are unclear. Lamprey ammocoetes are the only detritivorous fish in the lower Willamette River, Oregon, USA, and have been observed in Portland Harbor sediments. Their long benthic larval stage places them at risk from the effects of contaminated sediment. The authors developed experimental methods to assess the effects of contaminated sediment on the growth and behavior of field-collected ammocoetes reared in a laboratory. Specifically, they developed methods to assess individual growth and burrowing behavior. Burrowing performance demonstrated high variability among contaminated sediments; however, ammocoetes presented with noncontaminated reference sediment initiated burrowing more rapidly and completed it faster. Ammocoete reemergence from contaminated sediments suggests avoidance of some chemical compounds. The authors conducted long-term exposure experiments on individually held ammocoetes using sediment collected from their native Siletz River, which included the following: contaminated sediments collected from 9 sites within Portland Harbor, 2 uncontaminated reference sediments collected upstream, 1 uncontaminated sediment with characteristics similar to Portland Harbor sediments, and clean sand. They determined that a 24-h depuration period was sufficient to evaluate weight changes and observed no mortality or growth effects in fish exposed to any of the contaminated sediments. However, the effect on burrowing behavior appeared to be a sensitive endpoint, with potentially significant implications for predator avoidance.

Using geostatistical methods to estimate snow water equivalence distribution in a mountain watershed

USGS Publications Warehouse

Balk, B.; Elder, K.; Baron, Jill S.

1998-01-01

Knowledge of the spatial distribution of snow water equivalence (SWE) is necessary to adequately forecast the volume and timing of snowmelt runoff.  In April 1997, peak accumulation snow depth and density measurements were independently taken in the Loch Vale watershed (6.6 km2), Rocky Mountain National Park, Colorado.  Geostatistics and classical statistics were used to estimate SWE distribution across the watershed.  Snow depths were spatially distributed across the watershed through kriging interpolation methods which provide unbiased estimates that have minimum variances.  Snow densities were spatially modeled through regression analysis.  Combining the modeled depth and density with snow-covered area (SCA produced an estimate of the spatial distribution of SWE.  The kriged estimates of snow depth explained 37-68% of the observed variance in the measured depths.  Steep slopes, variably strong winds, and complex energy balance in the watershed contribute to a large degree of heterogeneity in snow depth.

A Real-time Irrigation Forecasting System in Jiefangzha Irrigation District, China

NASA Astrophysics Data System (ADS)

Cong, Z.

2015-12-01

In order to improve the irrigation efficiency, we need to know when and how much to irrigate in real time. If we know the soil moisture content at this time, we can forecast the soil moisture content in the next days based on the rainfall forecasting and the crop evapotranspiration forecasting. Then the irrigation should be considered when the forecasting soil moisture content reaches to a threshold. Jiefangzha Irrigation District, a part of Hetao Irrigation District, is located in Inner Mongolia, China. The irrigated area of this irrigation district is about 140,000 ha mainly planting wheat, maize and sunflower. The annual precipitation is below 200mm, so the irrigation is necessary and the irrigation water comes from the Yellow river. We set up 10 sites with 4 TDR sensors at each site (20cm, 40cm, 60cm and 80cm depth) to monitor the soil moisture content. The weather forecasting data are downloaded from the website of European Centre for Medium-Range Weather Forecasts (ECMWF). The reference evapotranspiration is estimated based on FAO-Blaney-Criddle equation with only the air temperature from ECMWF. Then the crop water requirement is forecasted by the crop coefficient multiplying the reference evapotranspiration. Finally, the soil moisture content is forecasted based on soil water balance with the initial condition is set as the monitoring soil moisture content. When the soil moisture content reaches to a threshold, the irrigation warning will be announced. The irrigation mount can be estimated through three ways: (1) making the soil moisture content be equal to the field capacity; (2) making the soil moisture saturated; or (3) according to the irrigation quota. The forecasting period is 10 days. The system is developed according to B2C model with Java language. All the databases and the data analysis are carried out in the server. The customers can log in the website with their own username and password then get the information about the irrigation forecasting and other information about the irrigation. This system can be expanded in other irrigation districts. In future, it is even possible to upgrade the system for the mobile user.

Smartphone imagery to analyze animal-induced erosion in riverbanks

NASA Astrophysics Data System (ADS)

Sofia, Giulia; Masin, Roberta; Tarolli, Paolo

2016-04-01

Among the most invasive species, the Coypu (Myocastor coypus) best exemplifies the widespread damage caused by alien species to ecosystems, with effects on crops, riverine systems, and hydraulic structures. The extent of the latter impact is still rarely quantified, despite the increasing economic and social importance. In northern Italy, Coypu damages to the drainage network have multiple aspects. One main issue is related to the weakening of earthen structures: burrows significantly reduce the integrity of the banks, and potentially contribute to the bank failure. A second concern is related to the agricultural activities nearby the channels. When burrows are present, soil may collapse when subjected to the weight of heavy objects on the surface (such as vehicles and farm machinery). A third issue is connected on the impact of burrowing activities on riparian buffer zones. Coypu burrows create specific flowing paths for the water, delivering water and sediment from the fields directly to the drainage system, thus possibly reducing the efficiency of these zones, and improving the risk of surface water contamination. The purpose of this research is to provide a new perspective, from a geoscience point of view, on Coypu damages to riverbanks, showing the effectiveness of a low-cost approach to model surface burrowing damages and to quantify the related erosion. The work is based on the Structure-from-Motion (SfM) photogrammetric method. To quantify the damages, high-resolution 3D models of the riverbanks were reconstructed from imagery acquired with a smartphone (Prosdocimi et al. 2015). From these models, it was possible to determine the volume of the animal-induced erosion. Proven its effectiveness, the proposed method could allow the creation of a database of damages. Researchers could test the flexibility of the approach to determine the distribution of erosion along the whole drainage system as an index of damage region wide, and to determine the severity of damage as classified according to Coypu relative abundance ratings when available. This would offer the basis to compare biomes, identifying those suffering the most. The quantification of eroded sediment would also provide a scientific basis to improve the analysis of the impacts of burrowing animals on riparian habitats and native species as well as on the efficiency of buffer zones. Prosdocimi, M., Sofia, G., Dalla Fontana, G., Tarolli, P. (2015). Bank erosion in agricultural drainage networks: effectiveness of Structure-from-Motion photogrammetry for post-event analysis, Earth Surface Processes and Landforms, 40: 1891-1906. doi: 10.1002/esp.3767.

Evaluation of the Impact of AIRS Radiance and Profile Data Assimilation in Partly Cloudy Regions

NASA Technical Reports Server (NTRS)

Zavodsky, Bradley; Srikishen, Jayanthi; Jedlovec, Gary

2013-01-01

Improvements to global and regional numerical weather prediction have been demonstrated through assimilation of data from NASA s Atmospheric Infrared Sounder (AIRS). Current operational data assimilation systems use AIRS radiances, but impact on regional forecasts has been much smaller than for global forecasts. Retrieved profiles from AIRS contain much of the information that is contained in the radiances and may be able to reveal reasons for this reduced impact. Assimilating AIRS retrieved profiles in an identical analysis configuration to the radiances, tracking the quantity and quality of the assimilated data in each technique, and examining analysis increments and forecast impact from each data type can yield clues as to the reasons for the reduced impact. By doing this with regional scale models individual synoptic features (and the impact of AIRS on these features) can be more easily tracked. This project examines the assimilation of hyperspectral sounder data used in operational numerical weather prediction by comparing operational techniques used for AIRS radiances and research techniques used for AIRS retrieved profiles. Parallel versions of a configuration of the Weather Research and Forecasting (WRF) model with Gridpoint Statistical Interpolation (GSI) are run to examine the impact AIRS radiances and retrieved profiles. Statistical evaluation of a long-term series of forecast runs will be compared along with preliminary results of in-depth investigations for select case comparing the analysis increments in partly cloudy regions and short-term forecast impacts.

Evaluation of the Impact of Atmospheric Infrared Sounder (AIRS) Radiance and Profile Data Assimilation in Partly Cloudy Regions

NASA Technical Reports Server (NTRS)

Zavodsky, Bradley; Srikishen, Jayanthi; Jedlovec, Gary

2013-01-01

Improvements to global and regional numerical weather prediction have been demonstrated through assimilation of data from NASA s Atmospheric Infrared Sounder (AIRS). Current operational data assimilation systems use AIRS radiances, but impact on regional forecasts has been much smaller than for global forecasts. Retrieved profiles from AIRS contain much of the information that is contained in the radiances and may be able to reveal reasons for this reduced impact. Assimilating AIRS retrieved profiles in an identical analysis configuration to the radiances, tracking the quantity and quality of the assimilated data in each technique, and examining analysis increments and forecast impact from each data type can yield clues as to the reasons for the reduced impact. By doing this with regional scale models individual synoptic features (and the impact of AIRS on these features) can be more easily tracked. This project examines the assimilation of hyperspectral sounder data used in operational numerical weather prediction by comparing operational techniques used for AIRS radiances and research techniques used for AIRS retrieved profiles. Parallel versions of a configuration of the Weather Research and Forecasting (WRF) model with Gridpoint Statistical Interpolation (GSI) are run to examine the impact AIRS radiances and retrieved profiles. Statistical evaluation of 6 weeks of forecast runs will be compared along with preliminary results of in-depth investigations for select case comparing the analysis increments in partly cloudy regions and short-term forecast impacts.

Hibernacula and summer den sites of pine snakes (Pituophis melanoleucus) in the New Jersey pine barrens

USGS Publications Warehouse

Burger, J.; Zappalorti, R.T.; Gochfeld, M.; Boarman, W.I.; Caffrey, M.; Doig, V.; Garber, S.D.; Lauro, B.; Mikovsky, M.; Safina, C.; Saliva, Jorge

1988-01-01

We examined eight summer dens (used only in summer) and seven hibernacula (occupied both in winter and summer) of the snake Pituophis melanoleucus in the New Jersey Pine Barrens, comparing above ground characteristics of hibernacula and summer dens with characteristics at nearby random points. Temperatures at the soil surface and at 10 cm depth were significantly warmer, and there was less leaf cover around the random points compared to the entrances of the hibernacula and summer dens. Hibernacula had significantly more vegetation cover within 5 m, more leaf cover over the burrow entrance, and were closer to trees than were summer dens. Most hibernacula and summer dens were beside old fallen logs (73%), the entrance tunnels following decaying roots into the soil. Excavation of the hibernacula and summer dens indicated that most hibernacula appeared to be dug by the snakes and had an average of eight side chambers and 642 cm of tunnels, compared to less than one side chamber and 122 cm of tunnels for summer dens. Except for hatchlings, most snakes in hibernacula were located in individual chambers off the main tunnel; all snakes were at depths of 50-111 cm (X̄ = 79 cm). Pine snakes may select optimum hibernation sites which reduce winter mortality.

A Social Justice Agenda: Ready, or Not?

ERIC Educational Resources Information Center

Speight, Suzette L.; Vera, Elizabeth M.

2004-01-01

This commentary highlights the innovative inclusion of social action groups in the 2001 Houston Conference and expands on their significance to the conference and the field. If the 2001 Houston Conference has correctly forecast a (re)establishment of social action as a mainstay of counseling psychology, then an in-depth exploration of how we train…

Can a coupled meteorology–chemistry model reproduce the historical trend in aerosol direct radiative effects over the Northern Hemisphere?

EPA Science Inventory

The ability of a coupled meteorology–chemistry model, i.e., Weather Research and Forecast and Community Multiscale Air Quality (WRF-CMAQ), to reproduce the historical trend in aerosol optical depth (AOD) and clear-sky shortwave radiation (SWR) over the Northern Hemisphere h...

Typhoon air-sea drag coefficient in coastal regions

NASA Astrophysics Data System (ADS)

Zhao, Zhong-Kuo; Liu, Chun-Xia; Li, Qi; Dai, Guang-Feng; Song, Qing-Tao; Lv, Wei-Hua

2015-02-01

The air-sea drag during typhoon landfalls is investigated for a 10 m wind speed as high as U10 ≈ 42 m s-1, based on multilevel wind measurements from a coastal tower located in the South China Sea. The drag coefficient (CD) plotted against the typhoon wind speed is similar to that of open ocean conditions; however, the CD curve shifts toward a regime of lower winds, and CD increases by a factor of approximately 0.5 relative to the open ocean. Our results indicate that the critical wind speed at which CD peaks is approximately 24 m s-1, which is 5-15 m s-1 lower than that from deep water. Shoaling effects are invoked to explain the findings. Based on our results, the proposed CD formulation, which depends on both water depth and wind speed, is applied to a typhoon forecast model. The forecasts of typhoon track and surface wind speed are improved. Therefore, a water-depth-dependence formulation of CD may be particularly pertinent for parameterizing air-sea momentum exchanges over shallow water.

An improved method for predicting the evolution of the characteristic parameters of an information system

NASA Astrophysics Data System (ADS)

Dushkin, A. V.; Kasatkina, T. I.; Novoseltsev, V. I.; Ivanov, S. V.

2018-03-01

The article proposes a forecasting method that allows, based on the given values of entropy and error level of the first and second kind, to determine the allowable time for forecasting the development of the characteristic parameters of a complex information system. The main feature of the method under consideration is the determination of changes in the characteristic parameters of the development of the information system in the form of the magnitude of the increment in the ratios of its entropy. When a predetermined value of the prediction error ratio is reached, that is, the entropy of the system, the characteristic parameters of the system and the depth of the prediction in time are estimated. The resulting values of the characteristics and will be optimal, since at that moment the system possessed the best ratio of entropy as a measure of the degree of organization and orderliness of the structure of the system. To construct a method for estimating the depth of prediction, it is expedient to use the maximum principle of the value of entropy.

Final Environmental Assessment of Construction of Emerald Coast Technology and Research Campus at the University of Florida Reserarch Engineering Education Facility at Eglin Air Force Base, Florida

DTIC Science & Technology

2012-03-01

document should be directed to Mr. Larry Chavers. Public comments should be directed to Mr. Mike Spaits. Mr. Chavers and Mr. Spaits can be reached...Section. • Should a gopher tortoise burrow be identified within the proposed path of construction by construction personnel, work will cease until...Natural Resources personnel have investigated the burrow and relocated any gopher tortoise or commensals to a suitable location. 3 • Gopher tortoise and

National Dam Safety Program. Potake Lake Dam (Inventory Number N.Y. 970), Passaic River Basin, Lower Hudson River Area, Rockland County, New York. Phase I Inspection Report,

DTIC Science & Technology

1981-08-14

facilitate thedischarge of storm flows. 2. The animal burrows, depressions , and tire ruts onthe crest of the dam should be filled, compacted and seeded. 3...storm flows. 2. The animal burrows, depressions , and tire ruts on the crest of the dam should be filled, compacted, and seeded...defined by the Recommended Guidelines for Safety Inspection of Dams (Reference 13, Appendix D). d. Hazard Classifications - Cranberry Lake Dam is one mile

Burrowing activities of the larval lamprey

USGS Publications Warehouse

Sawyer, Philip J.

1959-01-01

Since the appearance in 1950 of Applegate's work on the sea lamprey in Michigan (U. S. Fish and Wildl. Serv., Spec. Sci. Rept.; Fish, No. 55) and the subsequent development of means to control lampreys in the Great Lakes, biologists have accumulated much additional information on adult lampreys. Larval lampreys, however, are difficult animals to observe in the field, and many facets of their behavior are still unknown. While working with the U. S. Fish and Wildlife Service, I kept ammocetes in captivity, and was able to observe their burrowing activities.

BigBWA: approaching the Burrows-Wheeler aligner to Big Data technologies.

PubMed

Abuín, José M; Pichel, Juan C; Pena, Tomás F; Amigo, Jorge

2015-12-15

BigBWA is a new tool that uses the Big Data technology Hadoop to boost the performance of the Burrows-Wheeler aligner (BWA). Important reductions in the execution times were observed when using this tool. In addition, BigBWA is fault tolerant and it does not require any modification of the original BWA source code. BigBWA is available at the project GitHub repository: https://github.com/citiususc/BigBWA. © The Author 2015. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

Integrating Satellite Measurements from Polar-orbiting instruments into Smoke Disperson Forecasts

NASA Astrophysics Data System (ADS)

Smith, N.; Pierce, R. B.; Barnet, C.; Gambacorta, A.; Davies, J. E.; Strabala, K.

2015-12-01

The IDEA-I (Infusion of Satellite Data into Environmental Applications-International) is a real-time system that currently generates trajectory-based forecasts of aerosol dispersion and stratospheric intrusions. Here we demonstrate new capabilities that use satellite measurements from the Joint Polar Satellite System (JPSS) Suomi-NPP (S-NPP) instruments (operational since 2012) in the generation of trajectory-based predictions of smoke dispersion from North American wildfires. Two such data products are used, namely the Visible Infrared Imaging Radiometer Suite (VIIRS) Aerosol Optical Depth (AOD) and the combined Cross-track Infrared Sounder (CrIS) and Advanced Technology Microwave Sounder (ATMS) NOAA-Unique CrIS-ATMS Processing System (NUCAPS) carbon monoxide (CO) retrievals. The latter is a new data product made possible by the release of full spectral-resolution CrIS measurements since December 2014. Once NUCAPS CO becomes operationally available it will be used in real-time applications such as IDEA-I along with VIIRS AOD and meteorological forecast fields to support National Weather Service (NWS) Incident Meteorologist (IMET) and air quality management decision making. By combining different measurements, the information content of the IDEA-I transport and dispersion forecast is improved within the complex terrain features that dominate the Western US and Alaska. The primary user community of smoke forecasts is the Western regions of the National Weather Service (NWS) and US Environmental Protection Agency (EPA) due to the significant impacts of wildfires in these regions. With this we demonstrate the quality of the smoke dispersion forecasts that can be achieved by integrating polar-orbiting satellite measurements with forecast models to enable on-site decision support services for fire incident management teams and other real-time air quality agencies.

Achieving the NOAA Arctic Action Plan: The Missing Permafrost Element - Permafrost Forecasting Listening Session Results

NASA Astrophysics Data System (ADS)

Buxbaum, T. M.; Thoman, R.; Romanovsky, V. E.

2015-12-01

Permafrost is ground at or below freezing for at least two consecutive years. It currently occupies 80% of Alaska. Permafrost temperature and active layer thickness (ALT) are key climatic variables for monitoring permafrost conditions. Active layer thickness is the depth that the top layer of ground above the permafrost thaws each summer season and permafrost temperature is the temperature of the frozen permafrost under this active layer. Knowing permafrost conditions is key for those individuals working and living in Alaska and the Arctic. The results of climate models predict vast changes and potential permafrost degradation across Alaska and the Arctic. NOAA is working to implement its 2014 Arctic Action Plan and permafrost forecasting is a missing piece of this plan. The Alaska Center for Climate Assessment and Policy (ACCAP), using our webinar software and our diverse network of statewide stakeholder contacts, hosted a listening session to bring together a select group of key stakeholders. During this listening session the National Weather Service (NWS) and key permafrost researchers explained what is possible in the realm of permafrost forecasting and participants had the opportunity to discuss and share with the group (NWS, researchers, other stakeholders) what is needed for usable permafrost forecasting. This listening session aimed to answer the questions: Is permafrost forecasting needed? If so, what spatial scale is needed by stakeholders? What temporal scales do stakeholders need/want? Are there key times (winter, fall freeze-up, etc.) or locations (North Slope, key oil development areas, etc.) where forecasting would be most applicable and useful? Are there other considerations or priority needs we haven't thought of regarding permafrost forecasting? This presentation will present the results of that listening session.

Sensitivity analysis of numerical weather prediction radiative schemes to forecast direct solar radiation over Australia

NASA Astrophysics Data System (ADS)

Mukkavilli, S. K.; Kay, M. J.; Taylor, R.; Prasad, A. A.; Troccoli, A.

2014-12-01

The Australian Solar Energy Forecasting System (ASEFS) project requires forecasting timeframes which range from nowcasting to long-term forecasts (minutes to two years). As concentrating solar power (CSP) plant operators are one of the key stakeholders in the national energy market, research and development enhancements for direct normal irradiance (DNI) forecasts is a major subtask. This project involves comparing different radiative scheme codes to improve day ahead DNI forecasts on the national supercomputing infrastructure running mesoscale simulations on NOAA's Weather Research & Forecast (WRF) model. ASEFS also requires aerosol data fusion for improving accurate representation of spatio-temporally variable atmospheric aerosols to reduce DNI bias error in clear sky conditions over southern Queensland & New South Wales where solar power is vulnerable to uncertainities from frequent aerosol radiative events such as bush fires and desert dust. Initial results from thirteen years of Bureau of Meteorology's (BOM) deseasonalised DNI and MODIS NASA-Terra aerosol optical depth (AOD) anomalies demonstrated strong negative correlations in north and southeast Australia along with strong variability in AOD (~0.03-0.05). Radiative transfer schemes, DNI and AOD anomaly correlations will be discussed for the population and transmission grid centric regions where current and planned CSP plants dispatch electricity to capture peak prices in the market. Aerosol and solar irradiance datasets include satellite and ground based assimilations from the national BOM, regional aerosol researchers and agencies. The presentation will provide an overview of this ASEFS project task on WRF and results to date. The overall goal of this ASEFS subtask is to develop a hybrid numerical weather prediction (NWP) and statistical/machine learning multi-model ensemble strategy that meets future operational requirements of CSP plant operators.

Multi-platform operational validation of the Western Mediterranean SOCIB forecasting system

NASA Astrophysics Data System (ADS)

Juza, Mélanie; Mourre, Baptiste; Renault, Lionel; Tintoré, Joaquin

2014-05-01

The development of science-based ocean forecasting systems at global, regional, and local scales can support a better management of the marine environment (maritime security, environmental and resources protection, maritime and commercial operations, tourism, ...). In this context, SOCIB (the Balearic Islands Coastal Observing and Forecasting System, www.socib.es) has developed an operational ocean forecasting system in the Western Mediterranean Sea (WMOP). WMOP uses a regional configuration of the Regional Ocean Modelling System (ROMS, Shchepetkin and McWilliams, 2005) nested in the larger scale Mediterranean Forecasting System (MFS) with a spatial resolution of 1.5-2km. WMOP aims at reproducing both the basin-scale ocean circulation and the mesoscale variability which is known to play a crucial role due to its strong interaction with the large scale circulation in this region. An operational validation system has been developed to systematically assess the model outputs at daily, monthly and seasonal time scales. Multi-platform observations are used for this validation, including satellite products (Sea Surface Temperature, Sea Level Anomaly), in situ measurements (from gliders, Argo floats, drifters and fixed moorings) and High-Frequency radar data. The validation procedures allow to monitor and certify the general realism of the daily production of the ocean forecasting system before its distribution to users. Additionally, different indicators (Sea Surface Temperature and Salinity, Eddy Kinetic Energy, Mixed Layer Depth, Heat Content, transports in key sections) are computed every day both at the basin-scale and in several sub-regions (Alboran Sea, Balearic Sea, Gulf of Lion). The daily forecasts, validation diagnostics and indicators from the operational model over the last months are available at www.socib.es.

Habitat compression and expansion of sea urchins in response to changing climate conditions on the California continental shelf and slope (1994-2013)

NASA Astrophysics Data System (ADS)

Sato, Kirk N.; Levin, Lisa A.; Schiff, Kenneth

2017-03-01

Echinoid sea urchins with distributions along the continental shelf and slope of the eastern Pacific often dominate the megafauna community. This occurs despite their exposure to naturally low dissolved oxygen (DO) waters (<60 μmol kg-1) associated with the Oxygen Limited Zone and low-pH waters undersaturated with respect to calcium carbonate (ΩCaCO3<1). Here we present vertical depth distribution and density analyses of historical otter trawl data collected in the Southern California Bight (SCB) from 1994 to 2013 to address the question: Do changes in echinoid density and species' depth distributions along the continental margin in the SCB reflect observed secular or interannual changes in climate? Deep-dwelling burrowing urchins (Brissopsis pacifica, Brisaster spp. and Spatangus californicus), which are adapted to low-DO, low-pH conditions appeared to have expanded their vertical distributions and populations upslope over the past decade (2003-2013), and densities of the deep pink urchin, Strongylocentrotus fragilis, increased significantly in the upper 500 m of the SCB. Conversely, the shallower urchin, Lytechinus pictus, exhibited depth shoaling and density decreases within the upper 200 m of the SCB from 1994 to 2013. Oxygen and pH in the SCB also vary inter-annually due to varying strengths of the El Niño Southern Oscillation (ENSO). Changes in depth distributions and densities were correlated with bi-monthly ENSO climate indices in the region. Our results suggest that both a secular trend in ocean deoxygenation and acidification and varying strength of ENSO may be linked to echinoid species distributions and densities, creating habitat compression in some and habitat expansion in others. Potential life-history mechanisms underlying depth and density changes observed over these time periods include migration, mortality, and recruitment. These types of analyses are needed for a broad suite of benthic species in order to identify and manage climate-sensitive species on the margin.

Osteology, Phylogeny, Taphonomy, and Ontogenetic Histology of Oryctodromeus cubicularis, from the Middle Cretaceous (Albian-Cenomanian) of Montana and Idaho

NASA Astrophysics Data System (ADS)

Krumenacker, L. J.

Oryctodromeus is a small bipedal dinosaur known from middle Cretaceous (95-100 My) Wayan Formation of Idaho and the Vaughn Member of the Blackleaf Formation of Montana. This taxon is hypothesized to be a burrowing dinosaur, which cared for its young within these burrows. This dissertation is a broad three-part treatment of this taxon, and excepting the introductory and concluding chapters this dissertation consists of three main chapters. Chapter two describes the osteology and phylogenetic relationships of this animal. Notable features of the Oryctodromeus skeleton described include a network of ossified tendons along the vertebral column that completely ensheath the tail, a long tail that forms more than half the length of the animal, and unusual femoral heads whose morphology may be related to burrowing behavior. The first full skeletal and skull reconstructions of this animal are presented. Chapter three investigates patterns of preservation of Oryctodromeus. Data suggests that preservation of single to multiple individuals of this taxon typically occurred in burrows that may be difficult to impossible to recognize in the fossil record. New examples of burrows from Oryctodromeus from the Vaughn and Wayan, as well as additional evidence for social behavior, are also described. A third chapter details the ontogenetic histology, growth rates and patterns of skeletal fusion based on seven limb elements (femora and tibiae) from different individuals. Based on the data in this dissertation, three growth stages can be recognized in Oryctodromeus based on bone histology. Juveniles are defined by more rapidly growing fibrolamellar tissue, sub-adults are defined by a cortex of inner fibrolamellar tissue and outer zonal parallel fibered tissue, and near-adult individuals have tissue similar to sub adults with dense avascular bone in the outermost cortex that signals a decrease in growth rate. LAG's suggest a minimum age of six to seven years for more mature individuals. Patterns of neurocentral fusion in Oryctodromeus appear similar to those of crocodylians and some other small ornithischians, while the growth rates of Oryctodromeus appear slower than those of some dinosaurs, but similar to taxa such as Orodromeus and Tenontosaurus.

Comparing food limitation among three stages of nesting: supplementation experiments with the burrowing owl

PubMed Central

Wellicome, Troy I; Danielle Todd, L; Poulin, Ray G; Holroyd, Geoffrey L; Fisher, Ryan J

2013-01-01

Abstract Food availability is an important limiting factor for avian reproduction. In altricial birds, food limitation is assumed to be more severe during the nestling stage than during laying or incubation, but this has yet to be adequately tested. Using food-supplementation experiments over a 5-year period, we determined the degree and timing of food limitation for burrowing owls (Athene cunicularia) breeding in Canada. Burrowing owls are an endangered species and food limitation during the nestling stage could influence reproductive performance of this species at the northern extent of their range. Supplemented pairs fledged on average 47% more owlets than unfed pairs, except during a year when natural food was not limiting (i.e., a prey irruption year). The difference in fledgling production resulted from high nestling mortality in unfed broods, with 96% of all nestling deaths being attributed to food shortage. Supplemental feeding during the nestling period also increased fledgling structural size. Pairs fed from the start of laying produced the same number of hatchlings as pairs that received no supplemental food before hatch. Furthermore, pairs supplemented from egg laying to fledging and pairs supplemented during the nestling period alone had the same patterns of nestling survival, equal numbers of fledglings, and similar fledgling mass and structural size. Our results provide empirical support for the hypothesis that the nestling period is the most food-limited phase of the breeding cycle. The experimental design we introduce here could be used with other altricial species to examine how the timing of food limitation differs among birds with a variety of life-history strategies. For burrowing owls, and other species with similar life histories, long-term, large-scale, and appropriately timed habitat management increasing prey abundance or availability is critical for conservation. Our results provide empirical support for the hypothesis that the nestling period is the most food-limited phase of the breeding cycle. For burrowing owls, and other species with similar life histories, long-term, large-scale, and appropriately timed habitat management increasing prey abundance or availability is critical for conservation. PMID:24567832

Potential influences of neglecting aerosol effects on the NCEP GFS precipitation forecast

NASA Astrophysics Data System (ADS)

Jiang, Mengjiao; Feng, Jinqin; Li, Zhanqing; Sun, Ruiyu; Hou, Yu-Tai; Zhu, Yuejian; Wan, Bingcheng; Guo, Jianping; Cribb, Maureen

2017-11-01

Aerosol-cloud interactions (ACIs) have been widely recognized as a factor affecting precipitation. However, they have not been considered in the operational National Centers for Environmental Predictions Global Forecast System model. We evaluated the potential impact of neglecting ACI on the operational rainfall forecast using ground-based and satellite observations and model reanalysis. The Climate Prediction Center unified gauge-based precipitation analysis and the Modern-Era Retrospective analysis for Research and Applications Version 2 aerosol reanalysis were used to evaluate the forecast in three countries for the year 2015. The overestimation of light rain (47.84 %) and underestimation of heavier rain (31.83, 52.94, and 65.74 % for moderate rain, heavy rain, and very heavy rain, respectively) from the model are qualitatively consistent with the potential errors arising from not accounting for ACI, although other factors cannot be totally ruled out. The standard deviation of the forecast bias was significantly correlated with aerosol optical depth in Australia, the US, and China. To gain further insight, we chose the province of Fujian in China to pursue a more insightful investigation using a suite of variables from gauge-based observations of precipitation, visibility, water vapor, convective available potential energy (CAPE), and satellite datasets. Similar forecast biases were found: over-forecasted light rain and under-forecasted heavy rain. Long-term analyses revealed an increasing trend in heavy rain in summer and a decreasing trend in light rain in other seasons, accompanied by a decreasing trend in visibility, no trend in water vapor, and a slight increasing trend in summertime CAPE. More aerosols decreased cloud effective radii for cases where the liquid water path was greater than 100 g m-2. All findings are consistent with the effects of ACI, i.e., where aerosols inhibit the development of shallow liquid clouds and invigorate warm-base mixed-phase clouds (especially in summertime), which in turn affects precipitation. While we cannot establish rigorous causal relations based on the analyses presented in this study, the significant rainfall forecast bias seen in operational weather forecast model simulations warrants consideration in future model improvements.

Use of multiple den sites by Eurasian badgers, Meles meles, in a Mediterranean habitat.

PubMed

Loureiro, Filipa; Rosalino, Luís Miguel; Macdonald, David W; Santos-Reis, Margarida

2007-10-01

Den sites are a conspicuous feature of Eurasian badgers, Meles meles, and in many environments include large communal burrows used by several group members. In Serra de Grândola, southwest Portugal, nine badgers from three social groups were captured and radio collared from 2000 to 2004. A total of 1,787 locations of badgers in their resting sites were registered along with a brief description of the type of site and weather conditions. Resting sites were grouped according to structure (burrows, shrubs, rocks, hollow trees and man-made structures) and function (main, secondary and occasional). Although main setts were the most frequently used shelter (62.25%), an average of 14 (SD 7.55) resting sites were used in each territory. The pattern of use varied seasonally, showing differences according to sex and social group. Overall, females used more than twice as many occasional resting sites as did males. Generally burrows, predominantly main setts, were most frequently used during winter and autumn, whilst non-burrow shelters were preferred during spring and summer, when the weather was hot, dry and not windy. Proximity to food patches had no apparent influence on the location of resting sites. Our results offered no support for the foraging-related hypotheses that multiple resting sites are a means of conserving energy or of maintaining proximity to rich food patches. We suggest that other factors such as thermoregulation needs, disturbance, and reproductive status, could be influencing the observed pattern of resting-site use by badgers in Serra de Grândola.

Spiny trapdoor spiders (Euoplos) of eastern Australia: Broadly sympatric clades are differentiated by burrow architecture and male morphology.

PubMed

Wilson, Jeremy D; Hughes, Jane M; Raven, Robert J; Rix, Michael G; Schmidt, Daniel J

2018-05-01

Spiders of the infraorder Mygalomorphae are fast becoming model organisms for the study of biogeography and speciation. However, these spiders can be difficult to study in the absence of fundamental life history information. In particular, their cryptic nature hinders comprehensive sampling, and linking males with conspecific females can be challenging. Recently discovered differences in burrow entrance architecture and male morphology indicated that these challenges may have impeded our understanding of the trapdoor spider genus Euoplos in Australia's eastern mesic zone. We investigated the evolutionary significance of these discoveries using a multi-locus phylogenetic approach. Our results revealed the existence of a second, previously undocumented, lineage of Euoplos in the eastern mesic zone. This new lineage occurs in sympatry with a lineage previously known from the region, and the two are consistently divergent in their burrow entrance architecture and male morphology, revealing the suitability of these characters for use in phylogenetic studies. Divergent burrow entrance architecture and observed differences in microhabitat preferences are suggested to facilitate sympatry and syntopy between the lineages. Finally, by investigating male morphology and plotting it onto the phylogeny, we revealed that the majority of Euoplos species remain undescribed, and that males of an unnamed species from the newly discovered lineage had historically been linked, erroneously, to a described species from the opposite lineage. This paper clarifies the evolutionary relationships underlying life history diversity in the Euoplos of eastern Australia, and provides a foundation for urgently needed taxonomic revision of this genus. Copyright © 2018 Elsevier Inc. All rights reserved.

Importance of agricultural landscapes to nesting burrowing owls in the Northern Great Plains, USA

USGS Publications Warehouse

Restani, M.; Davies, J.M.; Newton, W.E.

2008-01-01

Anthropogenic habitat loss and fragmentation are the principle factors causing declines of grassland birds. Declines in burrowing owl (Athene cunicularia) populations have been extensive and have been linked to habitat loss, primarily the decline of black-tailed prairie dog (Cynomys ludovicianus) colonies. Development of habitat use models is a research priority and will aid conservation of owls inhabiting human-altered landscapes. From 2001 to 2004 we located 160 burrowing owl nests on prairie dog colonies on the Little Missouri National Grassland in North Dakota. We used multiple linear regression and Akaike's Information Criterion to estimate the relationship between cover type characteristics surrounding prairie dog colonies and (1) number of owl pairs per colony and (2) reproductive success. Models were developed for two spatial scales, within 600 m and 2,000 m radii of nests for cropland, crested wheatgrass (Agropyron cristatum), grassland, and prairie dog colonies. We also included number of patches as a metric of landscape fragmentation. Annually, fewer than 30% of prairie dog colonies were occupied by owls. None of the models at the 600 m scale explained variation in number of owl pairs or reproductive success. However, models at the 2,000 m scale did explain number of owl pairs and reproductive success. Models included cropland, crested wheatgrass, and prairie dog colonies. Grasslands were not included in any of the models and had low importance values, although percentage grassland surrounding colonies was high. Management that protects prairie dog colonies bordering cropland and crested wheatgrass should be implemented to maintain nesting habitat of burrowing owls. ?? 2008 Springer Science+Business Media B.V.

The chemistry and mineralogy of haloed burrows in pelagic sediment at DOMES Site A: The equatorial North Pacific

USGS Publications Warehouse

Piper, D.Z.; Rude, P.D.; Monteith, S.

1987-01-01

The chemical and mineralogical composition of burrowed sediment, recovered in 66 box cores at latitude 9??25???N and longitude 151??15???W in the equatorial Pacific, demonstrates the important role of infauna in determining the geochemistry of pelagic sediment. Haloed burrows, approximately 3 cm across, were present in many of the cores. Within early Tertiary sediment that was covered by less than 5 cm of surface Quaternary sediment in several cores, the burrows in cross-section consist of three units: (1) a dark yellowish-brown central zone of Quaternary sediment surrounded, by (2) a pale yellowish-orange zone (the halo) of Tertiary sediment, which is surrounded by (3) a metal-oxide precipitate; the enclosing Tertiary sediment is dusky brown. Several elements - Mn, Ni, Cu, Co, Zn, Sb and Ce - have been leached from the light-colored halo, whereas Cr, Cs, Hf, Rb, Sc, Ta, Th, U, the rare earth elements exclusive of Ce, and the major oxides have not been leached. The metal-oxide zone, 1-5 mm thick, contains as much as 16% MnO2, as the mineral todorokite. The composition of the todorokite, exclusive of the admixed Tertiary sediment, resembles the composition of the metal deficit of the halo and also the composition of surface ferromanganese nodules that have been interpreted as having a predominantly diagenetic origin. Thus bioturbation contributes not only to the redistribution of metals within pelagic sediment, but also to the accretion of ferromanganese nodules on the sea floor. ?? 1987.

Sampling animal sign in heterogeneous environments: how much is enough?

USGS Publications Warehouse

Holbrook, Joseph D.; Arkle, Robert S.; Rachlow, Janet L.; Vierling, Kerri T.; Pilliod, David S.

2015-01-01

Animal ecologists often use animal sign as a surrogate for direct observation of organisms, especially when species are secretive or difficult to observe. Spatial heterogeneity in arid environments makes it challenging to consistently detect and precisely characterize animal sign, which can bias estimates of animal abundance or habitat use. Piute ground squirrels (Urocitellus mollis) and Owyhee harvester ants (Pogonomyrmex salinus) live in arid environments and are fossorial, which can make them difficult to observe directly. Their relative abundance can be assessed using sign (i.e., burrows and nests). We implemented an over-sampling framework (i.e., recorded an excessive amount of information) with two observers to 1) identify a sampling intensity that balanced precision with our resource constraints, and 2) assess classification and detection of squirrel burrows and ant nests across vegetation conditions. We sampled 20 1-ha plots for ground squirrel burrows and ant nests using six 4 m × 100 m belt transects. Analyses of precision and sampling effort indicated that three belt transects covering 1200 m2 per ha provided sufficient precision, while minimizing effort. Regardless of vegetation conditions, counts by two observers were strongly correlated for ground squirrel burrows (r = 0.99, P < 0.001, df = 18; slope = 0.92) and harvester ant nests (r = 0.99, P < 0.001, df = 18; slope = 1.01) indicating observer consistency and perhaps high detection probability. These findings illustrate an approach for evaluating sampling designs in many ecological contexts.

What constitutes a nesting attempt? Variation in criteria causes bias and hinders comparisons across studies

USGS Publications Warehouse

Garcia, V.; Conway, C.J.

2009-01-01

Because reliable estimates of nesting success are very important to avian studies, the defnition of a “successful nest” and the use of different analytical methods to estimate success have received much attention. By contrast, variation in the criteria used to determine whether an occupied site that did not produce offspring contained a nesting attempt is a source of bias that has been largely ignored. This problem is especially severe in studies that deal with species whose nest contents are relatively inaccessible because observers cannot determine whether or not an egg was laid for a large proportion of occupied sites. Burrowing Owls (Athene cunicularia) often lay their eggs ≥3 m below ground, so past Burrowing Owl studies have used a variety of criteria to determine whether a nesting attempt was initiated. We searched the literature to document the extent of that variation and examined how that variation influenced estimates of daily nest survival. We found 13 different sets of criteria used by previous authors and applied each criterion to our data set of 1,300 occupied burrows. We found significant variation in estimates of daily nest survival depending on the criteria used. Moreover, differences in daily nest survival among populations were apparent using some sets of criteria but not others. These inconsistencies may lead to incorrect conclusions and invalidate comparisons of the productivity and relative site quality among populations. We encourage future authors working on cavity-, canopy-, or burrow-nesting birds to provide specific details on the criteria they used to identify a nesting attempt.

Comparison of hydraulics and particle removal efficiencies in a mixed cell raceway and Burrows pond rearing system

USGS Publications Warehouse

Moffitt, Christine M.

2016-01-01

We compared the hydrodynamics of replicate experimental mixed cell and replicate standard Burrows pond rearing systems at the Dworshak National Fish Hatchery, ID, in an effort to identify methods for improved solids removal. We measured and compared the hydraulic residence time, particle removal efficiency, and measures of velocity using several tools. Computational fluid dynamics was used first to characterize hydraulics in the proposed retrofit that included removal of the traditional Burrows pond dividing wall and establishment of four counter rotating cells with appropriate drains and inlet water jets. Hydraulic residence time was subsequently established in the four full scale test tanks using measures of conductivity of a salt tracer introduced into the systems both with and without fish present. Vertical and horizontal velocities were also measured with acoustic Doppler velocimetry in transects across each of the rearing systems. Finally, we introduced ABS sinking beads that simulated fish solids then followed the kinetics of their removal via the drains to establish relative purge rates. The mixed cell raceway provided higher mean velocities and a more uniform velocity distribution than did the Burrows pond. Vectors revealed well-defined, counter-rotating cells in the mixed cell raceway, and were likely contributing factors in achieving a relatively high particle removal efficiency-88.6% versus 8.0% during the test period. We speculate retrofits of rearing ponds to mixed cell systems will improve both the rearing environments for the fish and solids removal, improving the efficiency and bio-security of fish culture. We recommend further testing in hatchery production trials to evaluate fish physiology and growth.

Vision on the high seas: spatial resolution and optical sensitivity in two procellariiform seabirds with different foraging strategies.

PubMed

Mitkus, Mindaugas; Nevitt, Gabrielle A; Danielsen, Johannis; Kelber, Almut

2016-11-01

Procellariiform or 'tubenosed' seabirds are challenged to find prey and orient over seemingly featureless oceans. Previous studies have found that life-history strategy (burrow versus surface nesting) was correlated to foraging strategy. Burrow nesters tended to track prey using dimethyl sulphide (DMS), a compound associated with phytoplankton, whereas surface-nesting species did not. Burrow nesters also tended to be smaller and more cryptic, whereas surface nesters were larger with contrasting plumage coloration. Together these results suggested that differences in life-history strategy might also be linked to differences in visual adaptations. Here, we used Leach's storm petrel, a DMS-responder, and northern fulmar, a non-responder, as model species to test this hypothesis on their sensory ecology. From the retinal ganglion cell density and photoreceptor dimensions, we determined that Leach's storm petrels have six times lower spatial resolution than the northern fulmars. However, the optical sensitivity of rod photoreceptors is similar between species. These results suggest that under similar atmospheric conditions, northern fulmars have six times the detection range for similarly sized objects. Both species have extended visual streaks with a central area of highest spatial resolution, but only the northern fulmar has a central fovea. The prediction that burrow-nesting DMS-responding procellariiforms should differ from non-responding species nesting in the open holds true for spatial resolution, but not for optical sensitivity. This result may reflect the fact that both species rely on olfaction for their nocturnal foraging activity, but northern fulmars might use vision more during daytime. © 2016. Published by The Company of Biologists Ltd.

Population dynamics, intervention and survival in African wild dogs (Lycaon pictus).

PubMed

Burrows, R; Hofer, H; East, M L

1995-11-22

The demography of Serengeti wild dog study packs and their extinction in 1991 was documented by Burrows et al. (1994). One explanation for pack loss compatible with demographic evidence was viral disease induced by stress caused by intervention (vaccination, immobilization and radio-collaring). Several studies claim to reject this hypothesis. However, cortisol levels measured in immobilized Lycaon, whose pathogen exposure is unknown, do not demonstrate that interventions in the Serengeti were benign. The analysis of survivorship in Lycaon in other ecosystems minimized the chance of demonstrating any effect of intervention and failed to consider vaccinations as intervention. There is now evidence that intervention significantly decreased survivorship of Masai Mara Lycaon. Further simulations of the likelihood of population extinction in Serengeti Lycaon, evidence of limited population variability and a small scaling factor in Serengeti Lycaon strengthen Burrows et al.'s conclusion that the extinction was unlikely to be due to chance alone. Although some studies claim that Lycaon conservation is doomed without intervention, to date vaccinations, blood sampling and radio-telemetry have contributed little to Lycaon conservation. All studies fail to disprove the Burrows hypothesis or provide convincing alternatives.

Co1 DNA supports conspecificity of Geomyphilus pierai and G. barrerai (Coleoptera, Scarabaeidae, Aphodiinae) and is a good marker for their phylogeographic investigation in Mexican mountains

PubMed Central

Arriaga-Jiménez, Alfonsina; Roy, Lise

2015-01-01

Abstract Members of Geomyphilus are associated with rodent burrows, such as pocket gophers and prairie dogs. In Mexico, they are found in the mountains of the Mexican Volcanic Belt and in Sierra Madre Oriental. Our study aims to initiate the exploration of the dispersal modes of Geomyphilus pierai and Geomyphilus barrerai from burrows of pocket gophers. In order to estimate the dispersal scale of the beetles, the utility of mitochondrial and nuclear molecular markers for studying the phylogeographic structure of this complex of species (Geomyphilus pierai and Geomyphilus barrerai) was tested from 49 beetle individuals. High intraspecific and intra-mountain nucleotidic diversity was captured from this sample using Co1 mitochondrial sequences, whilst the ITS2 nuclear ribosomal sequence did not allow observing informative variation. Mitochondrial phylogenetic analysis revealed that the specific delineation between the two species under study was doubtful. In this preliminary study, Co1 was shown to be a good marker for elucidating dispersal routes of the burrowing rodent-associated beetles. PMID:26257561

The morphology of the inner ear of squamate reptiles and its bearing on the origin of snakes

NASA Astrophysics Data System (ADS)

Palci, Alessandro; Hutchinson, Mark N.; Caldwell, Michael W.; Lee, Michael S. Y.

2017-08-01

The inner ear morphology of 80 snake and lizard species, representative of a range of ecologies, is here analysed and compared to that of the fossil stem snake Dinilysia patagonica, using three-dimensional geometric morphometrics. Inner ear morphology is linked to phylogeny (we find here a strong phylogenetic signal in the data that can complicate ecological correlations), but also correlated with ecology, with Dinilysia resembling certain semi-fossorial forms (Xenopeltis and Cylindrophis), consistent with previous reports. We here also find striking resemblances between Dinilysia and some semi-aquatic snakes, such as Myron (Caenophidia, Homalopsidae). Therefore, the inner ear morphology of Dinilysia is consistent with semi-aquatic as well as semi-fossorial habits: the most similar forms are either semi-fossorial burrowers with a strong affinity to water (Xenopeltis and Cylindrophis) or amphibious, intertidal forms which shelter in burrows (Myron). Notably, Dinilysia does not cluster as closely with snakes with exclusively terrestrial or obligate burrowing habits (e.g. scolecophidians and uropeltids). Moreover, despite the above similarities, Dinilysia also occupies a totally unique morphospace, raising issues with linking it with any particular ecological category.

Effects of cadmium-spiked sediment on cadmium accumulation and bioturbation by nymphs of the burrowing mayfly Hexagenia bilineata

USGS Publications Warehouse

Bartsch, Michelle; Cope, W. Gregory; Rada, Ronald G.

1999-01-01

We assessed accumulation of cadmium (Cd) and bioturbation by nymphs of the burrowing mayfly Hexagenia bilineata as indicators of exposure to Cd-spiked sediment in a 21-d test. Surficial sediments (top 5 cm) from Pool 7 of the Upper Mississippi River were spiked with Cd to concentrations of 3, 7, and 15 µg Cd g-1 dry weight. The experimental design was completely randomized, with three Cd-spiked sediment treatments plus an unspiked sediment control (1 µg Cd g-1 dry weight), and 10 nymphs in each of six replicates per treatment. Nymphs accumulated Cd during the 21-d exposure; mean concentrations varied from 0.22 to 6.24 µg g-1 dry weight, and tissue concentrations were correlated with Cd concentration in unfiltered test water (r = 0.93, P -1 treatment (our greatest exposure concentration) did not differ significantly from the control. Concentrations of Cd in unfiltered, overlying test water increased significantly within treatments during the test, indicating that nymphs mobilized sediment-associated Cd into the overlying water, presumably through burrowing and respiratory activities.

Smelling danger - alarm cue responses in the polychaete Nereis (Hediste) diversicolor (Müller, 1776) to potential fish predation.

PubMed

Schaum, C Elisa; Batty, Robert; Last, Kim S

2013-01-01

The harbour ragworm, Nereis (Hediste) diversicolor is a common intertidal marine polychaete that lives in burrows from which it has to partially emerge in order to forage. In doing so, it is exposed to a variety of predators. One way in which predation risk can be minimised is through chemical detection from within the relative safety of the burrows. Using CCTV and motion capture software, we show that H. diversicolor is able to detect chemical cues associated with the presence of juvenile flounder (Platichthys flesus). Number of emergences, emergence duration and distance from burrow entrance are all significantly reduced during exposure to flounder conditioned seawater and flounder mucous spiked seawater above a threshold with no evidence of behavioural habituation. Mucous from bottom-dwelling juvenile plaice (Pleuronectes platessa) and pelagic adult herring (Clupea harengus) elicit similar responses, suggesting that the behavioural reactions are species independent. The data implies that H. diversicolor must have well developed chemosensory mechanisms for predator detection and is consequently able to effectively minimize risk.

Definition of Pluviometric Thresholds For A Real Time Flood Forecasting System In The Arno Watershed

NASA Astrophysics Data System (ADS)

Amadio, P.; Mancini, M.; Mazzetti, P.; Menduni, G.; Nativi, S.; Rabuffetti, D.; Ravazzani, G.; Rosso, R.

The pluviometric flood forecasting thresholds are an easy method that helps river flood emergency management collecting data from limited area meteorologic model or telemetric raingauges. The thresholds represent the cumulated rainfall depth which generate critic discharge for a particular section. The thresholds were calculated for different sections of Arno river and for different antecedent moisture condition using the flood event distributed hydrologic model FEST. The model inputs were syntethic hietographs with different shape and duration. The system realibility has been verified by generating 500 year syntethic rainfall for 3 important subwatersheds of the studied area. A new technique to consider spatial variability of rainfall and soil properties effects on hydrograph has been investigated. The "Geomorphologic Weights" were so calculated. The alarm system has been implemented in a dedicated software (MIMI) that gets measured and forecast rainfall data from Autorità di Bacino and defines the state of the alert of the river sections.

Current-Sensitive Path Planning for an Underactuated Free-Floating Ocean Sensorweb

NASA Technical Reports Server (NTRS)

Dahl, Kristen P.; Thompson, David R.; McLaren, David; Chao, Yi; Chien, Steve

2011-01-01

This work investigates multi-agent path planning in strong, dynamic currents using thousands of highly under-actuated vehicles. We address the specific task of path planning for a global network of ocean-observing floats. These submersibles are typified by the Argo global network consisting of over 3000 sensor platforms. They can control their buoyancy to float at depth for data collection or rise to the surface for satellite communications. Currently, floats drift at a constant depth regardless of the local currents. However, accurate current forecasts have become available which present the possibility of intentionally controlling floats' motion by dynamically commanding them to linger at different depths. This project explores the use of these current predictions to direct float networks to some desired final formation or position. It presents multiple algorithms for such path optimization and demonstrates their advantage over the standard approach of constant-depth drifting.

Using Multi-Angle WorldView-2 Imagery to Determine Ocean Depth Near Oahu, Hawaii

DTIC Science & Technology

2012-09-01

Reflection geometry used in the definition of BRDF (From McConnon [2010...Visible/InfraRed Imaging Spectrometer BRDF : Bidirectional Reflectance Distribution Function DHMs: Digital Height Maps DNs: Digital Numbers EM...navigation and fisheries management, and are also helpful for improving models of ocean circulation, air-sea interaction, weather forecasting, and

7 CFR 1710.302 - Financial forecasts-power supply borrowers.

Code of Federal Regulations, 2013 CFR

2013-01-01

... facilities; (3) Provide an in-depth analysis of the regional markets for power if loan feasibility depends to any degree on a borrower's ability to sell surplus power while its system loads grow to meet the... sensitivity analysis if required by RUS pursuant to § 1710.300(d)(5). (e) The projections shall be coordinated...

Forecasting wetting and drying of post-wildfire soils in response to precipitation: A time series optimization approach

NASA Astrophysics Data System (ADS)

Basak, A.; Kulkarni, C.; Schmidt, K. M.; Mengshoel, O. J.

2015-12-01

Volumetric water content (VWC) in soils is critical for forecasting thresholds for runoff-driven erosion caused by rainfall. Even though theoretical relations (e.g., Richards equation) have been developed to quantify VWC in unsaturated granular soils, site-specific field conditions and hysteresis of suction and VWC in soil preclude their direct use. Although attempts have previously been made to forecast VWC using various time-series models (e.g., autoregressive integrated moving average or ARIMA), these approaches lack hydrologic foundations and perform poorly when used to forecast VWC over time periods longer than 24 hours. In this work, we extend an existing Antecedent Water Index (AWI) based model to express VWC as a function of time and rainfall. AWI models typically overfit data and cannot be used for forecast VWC over long time periods. We developed a new model to overcome this limitation, which accumulates rainfall over a time window and fits a diverse range of wetting and drying curves. Hydraulic redistribution parameters in this model bear resemblance to hydrologic processes driven by gravity and suction. This model reasonably forecasts VWC using only initial VWC values and rainfall forecasts. Experimental VWC data were collected from steep gradient post-wildfire sites in southern California. Rapid landscape change was observed in response to small to moderate rain storms. We formulated a mean-squared error minimization problem over the model parameters and optimized using genetic algorithms. We found that our model fits VWC data for 3 distinct soil textures, each occurring at 3 different depths below the ground surface (5 cm, 15 cm, and 30 cm). Our model successfully forecasts VWC trends, such as drying and wetting rate. To a certain extent, our model achieves spatial and seasonal generalizability. Our accumulative rainfall model is also applicable to continuous predictions, where VWC values are repeatedly used to predict future ones within a 12-hr time frame.

What is the relative role of initial hydrological conditions and meteorological forcing to the seasonal hydrological forecasting skill? Analysis along Europe's hydro-climatic gradient

NASA Astrophysics Data System (ADS)

Pechlivanidis, Ilias; Crochemore, Louise

2017-04-01

Recent advances in understanding and forecasting of climate have led into skilful seasonal meteorological predictions, which can consequently increase the confidence of hydrological prognosis. The majority of seasonal impact modelling has commonly been conducted at only one or a limited number of basins limiting the potential to understand large systems. Nevertheless, there is a necessity to develop operational seasonal forecasting services at the pan-European scale, capable of addressing the end-user needs. The skill of such forecasting services is subject to a number of sources of uncertainty, i.e. model structure, parameters, and forcing input. In here, we complement the "deep" knowledge from basin based modelling by investigating the relative contributions of initial hydrological conditions (IHCs) and meteorological forcing (MF) to the skill of a seasonal pan-European hydrological forecasting system. We use the Ensemble Streamflow Prediction (ESP) and reverse ESP (revESP) procedure to show a proxy of hydrological forecasting uncertainty due to MF and IHC uncertainties respectively. We further calculate the critical lead time (CLT), as a proxy of the river memory, after which the importance of MFs surpasses the importance of IHCs. We analyze these results in the context of prevailing hydro-climatic conditions for about 35000 European basins. Both model state initialisation (level in surface water, i.e. reservoirs, lakes and wetlands, soil moisture, snow depth) and provision of climatology are based on forcing input derived from the WFDEI product for the period 1981-2010. The analysis shows that the contribution of ICs and MFs to the hydrological forecasting skill varies considerably according to location, season and lead time. This analysis allows clustering of basins in which hydrological forecasting skill may be improved by better estimation of IHCs, e.g. via data assimilation of in-situ and/or satellite observations; whereas in other basins skill improvement depends on better MFs.

Late Holocene distal mud deposits off the Nakdong delta, SE Korea: evidence for shore-parallel sediment transport in a current-dominated setting

NASA Astrophysics Data System (ADS)

Chun, Jong-Hwa; Kim, Yuri; Bahk, Jang-Jun; Kim, Young Jun; Kang, Dong-Hyo; Kim, Yong Hoon; Kim, Gil Young; Ryu, Byong-Jae

2015-12-01

The distal mud deposits (DMDs) off the Nakdong delta represent a subaqueous delta on the inner continental shelf aligned parallel to the southeast coast of Korea and displaying a clinoform geometry. Hydrographically, the coast is characterized by a micro-tidal regime, the strong Korean Coastal Current (KCC) and the East Korean Warm Current (EKWC). Age models and sedimentary facies related to the clinoform geometries are based on high-resolution chirp subbottom profile data and have provided information on shore-parallel sediment transport and accumulation during the late Holocene sea-level highstand. The highest sedimentation rates (6.19-9.17 cm/year) produced steep foresets in the central DMDs at water depths of 35-50 m. Here, vertical burrows are repeatedly truncated by laminated mud packages displaying erosional surfaces. This region represents the main depocenter of the Nakdong subaqueous delta. The topset sediments of the southern DMD at ~40 m water depth closer to the river mouth show relatively low sedimentation rates (0.01-0.12 cm/year). Here, the muds have a predominantly mottled character. Similarly, the foreset sediments of the northern DMD at ~71-80 m water depth with sedimentation rates of 0.10-2.03 cm/year are also predominantly characterized by mottled muds. The spatial dispersal pattern of the DMDs is consistent with the coast-parallel front between the KCC and EKWC along the southeast Korean coast. In addition, the depocenter of the Nakdong subaqueous delta clinoform is affected by the near-bed turbulence generated by episodic storm events.

Burrowing crickets endemic to summits in Mauritius (Orthoptera, Gryllidae): occupation of similar niches by species possibly derived from Australasian and African colonists.

PubMed

Hugel, Sylvain

2014-08-15

Two ground burrowing crickets are described from the oceanic island of Mauritius (South Western Indian Ocean): Gialaia (Eugialaia) strasbergi n. sp. belongs to a subgenus that was only known from Papua-New Guinea, and Taciturna baiderae n.sp. belongs to a genus that was only known from South Africa. Taciturna baiderae n. sp. displays a maternal care behavior to clutch of eggs and offspring. Elements of the biology of these two new species are given and their conservation status is assessed. 

Peak Wind Tool for General Forecasting

NASA Technical Reports Server (NTRS)

Barrett, Joe H., III

2010-01-01

The expected peak wind speed of the day is an important forecast element in the 45th Weather Squadron's (45 WS) daily 24-Hour and Weekly Planning Forecasts. The forecasts are used for ground and space launch operations at the Kennedy Space Center (KSC) and Cape Canaveral Air Force Station (CCAFS). The 45 WS also issues wind advisories for KSC/CCAFS when they expect wind gusts to meet or exceed 25 kt, 35 kt and 50 kt thresholds at any level from the surface to 300 ft. The 45 WS forecasters have indicated peak wind speeds are challenging to forecast, particularly in the cool season months of October - April. In Phase I of this task, the Applied Meteorology Unit (AMU) developed a tool to help the 45 WS forecast non-convective winds at KSC/CCAFS for the 24-hour period of 0800 to 0800 local time. The tool was delivered as a Microsoft Excel graphical user interface (GUI). The GUI displayed the forecast of peak wind speed, 5-minute average wind speed at the time of the peak wind, timing of the peak wind and probability the peak speed would meet or exceed 25 kt, 35 kt and 50 kt. For the current task (Phase II ), the 45 WS requested additional observations be used for the creation of the forecast equations by expanding the period of record (POR). Additional parameters were evaluated as predictors, including wind speeds between 500 ft and 3000 ft, static stability classification, Bulk Richardson Number, mixing depth, vertical wind shear, temperature inversion strength and depth and wind direction. Using a verification data set, the AMU compared the performance of the Phase I and II prediction methods. Just as in Phase I, the tool was delivered as a Microsoft Excel GUI. The 45 WS requested the tool also be available in the Meteorological Interactive Data Display System (MIDDS). The AMU first expanded the POR by two years by adding tower observations, surface observations and CCAFS (XMR) soundings for the cool season months of March 2007 to April 2009. The POR was expanded again by six years, from October 1996 to April 2002, by interpolating 1000-ft sounding data to 100-ft increments. The Phase II developmental data set included observations for the cool season months of October 1996 to February 2007. The AMU calculated 68 candidate predictors from the XMR soundings, to include 19 stability parameters, 48 wind speed parameters and one wind shear parameter. Each day in the data set was stratified by synoptic weather pattern, low-level wind direction, precipitation and Richardson Number, for a total of 60 stratification methods. Linear regression equations, using the 68 predictors and 60 stratification methods, were created for the tool's three forecast parameters: the highest peak wind speed of the day (PWSD), 5-minute average speed at the same time (A WSD), and timing of the PWSD. For PWSD and A WSD, 30 Phase II methods were selected for evaluation in the verification data set. For timing of the PWSD, 12 Phase\\I methods were selected for evaluation. The verification data set contained observations for the cool season months of March 2007 to April 2009. The data set was used to compare the Phase I and II forecast methods to climatology, model forecast winds and wind advisories issued by the 45 WS. The model forecast winds were derived from the 0000 and 1200 UTC runs of the 12-km North American Mesoscale (MesoNAM) model. The forecast methods that performed the best in the verification data set were selected for the Phase II version of the tool. For PWSD and A WSD, linear regression equations based on MesoNAM forecasts performed significantly better than the Phase I and II methods. For timing of the PWSD, none of the methods performed significantly bener than climatology. The AMU then developed the Microsoft Excel and MIDDS GUls. The GUIs display the forecasts for PWSD, AWSD and the probability the PWSD will meet or exceed 25 kt, 35 kt and 50 kt. Since none of the prediction methods for timing of the PWSD performed significantly better thanlimatology, the tool no longer displays this predictand. The Excel and MIDDS GUIs display forecasts for Day-I to Day-3 and Day-I to Day-5, respectively. The Excel GUI uses MesoNAM forecasts as input, while the MIDDS GUI uses input from the MesoNAM and Global Forecast System model. Based on feedback from the 45 WS, the AMU added the daily average wind speed from 30 ft to 60 ft to the tool, which is one of the parameters in the 24-Hour and Weekly Planning Forecasts issued by the 45 WS. In addition, the AMU expanded the MIDDS GUI to include forecasts out to Day-7.

Microscopic character of marine sediment containing disseminated gas hydrate. Examples from the Blake Ridge and the Middle America Trench

USGS Publications Warehouse

Lorenson, T.D.

2000-01-01

The presence of disseminated gas hydrate was inferred based on pore fluid geochemistry and downhole logging data, but was rarely observed at Ocean Drilling Program (ODP) Leg 164 (Blake Ridge), and Leg 170 (Middle America Trench, offshore from Costa Rica) drilling sites. Gas hydrate nucleation is likely to occur first in larger voids rather than in constricted pore space, where capillary forces depress the temperature-pressure stability field for gas hydrate formation. Traditional macroscopic descriptions of sediment fail to detect the microscopic character of primary and secondary porosity in sediment hosting disseminated gas hydrate. Light transmission and scanning electron microscopy of sediments within and below the depth of gas hydrate occurrences reveal at least four general types of primary and secondary porosity: (1) microfossils (diatoms, foraminifera, and spicules) void of infilling sediment, but commonly containing small masses of pyrite framboids; (2) infauna burrows filled with unconsolidated sand and or microfossil debris; (3) irregularly shaped pods of nonconsolidated framboidial pyrite; and (4) nonlithified volcanic ash.

The relative significance of biological and physical disturbance: an example from intertidal and subtidal sandy bottom communities

NASA Astrophysics Data System (ADS)

Brey, Thomas

1991-10-01

The effects of biological disturbance caused by the lugworm Arenicola marina (L.) on the abundance of the macrobenthic fauna were investigated at three subtidal stations (0·5 m, 12 m and 19 m water depth) in Kiel Bay (western Baltic) and on an intertidal flat in the German Wadden Sea. Different effects of biological disturbance were observed (1) between funnel and cast of the lugworm burrow, (2) among stations, (3) between seasons, and (4) among taxa and groups of different living mode of the macrofauna. The strength of the impact of A. marina on the abundance of a certain macrobenthic species depends on three factors: (1) species behaviour and living mode, (2) A. marina activity, and (3) hydrodynamic conditions. In general, the most distinct effects were observed at the intertidal station during summer, followed by the two deeper subtidal stations. At the very shallow station, only weak effects were detected.

Morphological differences in Macoma balthica (Bivalvia, Tellinacea) from a Dutch and three southeastern United States estuaries

NASA Astrophysics Data System (ADS)

Kamermans, Pauline; Van der Veer, Henk W.; Witte, Johannes IJ.; Adriaans, Ewout J.

1999-05-01

Field collections of the bivalve Macoma balthica in the Dutch Wadden Sea and three southeastern United States estuaries revealed morphological differences between populations of the two sides of the Atlantic Ocean. Individuals of the same age showed much larger shell lengths at the American stations. In addition, bivalves of the same body weight had higher siphon weights at the American stations than at the Dutch stations. This difference in siphon size was related to their burying depths. The American population, which invested more in heavier siphons, was able to burrow much deeper into the sediment (up to 30 cm). Deep burial may be an adaptation to avoid exposure to the high southern temperatures. Furthermore, it may serve as a refuge from blue crab predation. The results of our comparison between the southern American population and the European support the suggestion that populations of M. balthica living in these two regions should be considered separate and sibling species.

Native species behaviour mitigates the impact of habitat-forming invasive seaweed.

PubMed

Wright, Jeffrey T; Byers, James E; Koukoumaftsis, Loni P; Ralph, Peter J; Gribben, Paul E

2010-06-01

Habitat-forming invasive species cause large, novel changes to the abiotic environment. These changes may elicit important behavioural responses in native fauna, yet little is known about mechanisms driving this behaviour and how such trait-mediated responses influence the fitness of native species. Low dissolved oxygen is a key abiotic change created by the habitat-forming invasive seaweed, Caulerpa taxifolia, which influences an important behavioural response (burrowing depth) in the native infaunal bivalve Anadara trapezia. In Caulerpa-colonised areas, Anadara often emerged completely from the sediment, and we experimentally demonstrate that water column hypoxia beneath the Caulerpa canopy is the mechanism instigating this "pop-up" behaviour. Importantly, pop-up in Caulerpa allowed similar survivorship to that in unvegetated sediment; however, when we prevented Anadara from popping-up, they suffered >50% mortality in just 1 month. Our findings not only highlight the substantial environmental alteration by Caulerpa, but also an important role for the behaviour of native species in mitigating the effects of habitat-forming invasive species.

Short-term sea ice forecasts with the RASM-ESRL coupled model: A testbed for improving simulations of ocean-ice-atmosphere interactions in the marginal ice zone

NASA Astrophysics Data System (ADS)

Solomon, A.; Cox, C. J.; Hughes, M.; Intrieri, J. M.; Persson, O. P. G.

2015-12-01

The dramatic decrease of Arctic sea-ice has led to a new Arctic sea-ice paradigm and to increased commercial activity in the Arctic Ocean. NOAA's mission to provide accurate and timely sea-ice forecasts, as explicitly outlined in the National Ocean Policy and the U.S. National Strategy for the Arctic Region, needs significant improvement across a range of time scales to improve safety for human activity. Unfortunately, the sea-ice evolution in the new Arctic involves the interaction of numerous physical processes in the atmosphere, ice, and ocean, some of which are not yet understood. These include atmospheric forcing of sea-ice movement through stress and stress deformation; atmospheric forcing of sea-ice melt and formation through energy fluxes; and ocean forcing of the atmosphere through new regions of seasonal heat release. Many of these interactions involve emerging complex processes that first need to be understood and then incorporated into forecast models in order to realize the goal of useful sea-ice forecasting. The underlying hypothesis for this study is that errors in simulations of "fast" atmospheric processes significantly impact the forecast of seasonal sea-ice retreat in summer and its advance in autumn in the marginal ice zone (MIZ). We therefore focus on short-term (0-20 day) ice-floe movement, the freeze-up and melt-back processes in the MIZ, and the role of storms in modulating stress and heat fluxes. This study uses a coupled ocean-atmosphere-seaice forecast model as a testbed to investigate; whether ocean-sea ice-atmosphere coupling improves forecasts on subseasonal time scales, where systematic biases develop due to inadequate parameterizations (focusing on mixed-phase clouds and surface fluxes), how increased atmospheric resolution of synoptic features improves the forecasts, and how initialization of sea ice area and thickness and snow depth impacts the skill of the forecasts. Simulations are validated with measurements at pan-Arctic land sites, satellite data, and recent ocean field campaigns.

Sarcoptes scabiei Mites Modulate Gene Expression in Human Skin Equivalents

PubMed Central

Morgan, Marjorie S.; Arlian, Larry G.; Markey, Michael P.

2013-01-01

The ectoparasitic mite, Sarcoptes scabiei that burrows in the epidermis of mammalian skin has a long co-evolution with its hosts. Phenotypic studies show that the mites have the ability to modulate cytokine secretion and expression of cell adhesion molecules in cells of the skin and other cells of the innate and adaptive immune systems that may assist the mites to survive in the skin. The purpose of this study was to identify genes in keratinocytes and fibroblasts in human skin equivalents (HSEs) that changed expression in response to the burrowing of live scabies mites. Overall, of the more than 25,800 genes measured, 189 genes were up-regulated >2-fold in response to scabies mite burrowing while 152 genes were down-regulated to the same degree. HSEs differentially expressed large numbers of genes that were related to host protective responses including those involved in immune response, defense response, cytokine activity, taxis, response to other organisms, and cell adhesion. Genes for the expression of interleukin-1α (IL-1α) precursor, IL-1β, granulocyte/macrophage-colony stimulating factor (GM-CSF) precursor, and G-CSF precursor were up-regulated 2.8- to 7.4-fold, paralleling cytokine secretion profiles. A large number of genes involved in epithelium development and keratinization were also differentially expressed in response to live scabies mites. Thus, these skin cells are directly responding as expected in an inflammatory response to products of the mites and the disruption of the skin’s protective barrier caused by burrowing. This suggests that in vivo the interplay among these skin cells and other cell types, including Langerhans cells, dendritic cells, lymphocytes and endothelial cells, is responsible for depressing the host’s protective response allowing these mites to survive in the skin. PMID:23940705

Petrology and dolomitization of the C' zone, Red River Formation (Ordovician), in a deep core, Williston basin, Richland County, eastern Montana

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zenger, D.H.

Unocal's Superior [number sign]1 Vanderhoof 97-foot (29.6 m) core consists of 63 feet (19.2 m) of the upper part of the C' burrowed member (BM) overlain by 34 feet (10.4 m) of the C' laminated member (LM) of the productive Red River Formation. The LM is mainly laminated, anhydritic, stylolitic, essentially unfossiliferous dolomudstone to calcareous dolomudstone with more minor dolomitic lime mudstone. The unit represents a restricted, hypersaline, inner shelf environment. The BM is burrow-mottled (Thalassinoides ), skeletal, dolomitic wackestone to grainstone matrix to calcareous dolowackestone (burrow fills) and represents near-normal salinity, inner shelf conditions. Dolomite is primarily replacive andmore » in the LM occurs as 25--50 [mu]m rhombs floating in mudstone or associated with stylolites, and as nonplanar, polymodal (5--50 [mu]m) crystals in totally dolomitized intervals. Most BM dolomite consists of 20--160 [mu]m, primarily nonplanar crystals in the largely replaced burrow fills; it also occurs as crystals that are disseminated or focused along stylolites (as in LM), as large crystals selectively and pseudomorphically replacing echinoderm fragments, and more rarely as late-stage, void-filling saddle dolomite. Previous theories of dolomitization have invoked descending brines. Geochemical data, in particular depleted [delta][sup 18]O and relatively low amounts of trace elements Sr and Na, but high Fe and Mn content, reveal that if brines were responsible for early diagenetic replacement, the dolomite has not retained such geochemical memory; rather it has undergone modification, acquiring later diagenetic, burial signatures. Possibly more of the replacement itself was later and deeper than previously thought.« less

Post-Closure Inspection Report for the Tonopah Test Range, Nevada: For Calendar Year 2017, Revision 0

DOE Office of Scientific and Technical Information (OSTI.GOV)

Alvarado, Juan; Matthews, Patrick

This report provides the results of the annual post-closure inspections conducted at the closed corrective action units (CAUs) located on the Tonopah Test Range (TTR) and the Nevada Test and Training Range (NTTR). This report covers calendar year 2017 and includes visual inspection and repair activities completed at the following CAUs: CAU 400: Bomblet Pit and Five Points Landfill (TTR) CAU 407: Roller Coaster RadSafe Area (TTR) CAU 424: Area 3 Landfill Complexes (TTR) CAU 453: Area 9 UXO Landfill (TTR) CAU 487: Thunderwell Site (TTR) Visual inspections were conducted according to the post-closure plans in the approved closure reportsmore » and subsequent correspondence with the Nevada Division of Environmental Protection. The annual post-closure inspections were conducted on May 23, 2017. No maintenance or repair issues were noted at CAU 400 and CAU 487. Maintenance items and subsequent repairs include the following: CAU 407: A large animal burrow was observed in the southeast corner of the cover during the inspection. Two additional animal burrows were discovered during repair actions. All cover defects were repaired on January 9, 2018. CAU 424: CAS 03-08-002-A304 (Landfill Cell A3-4): A new monument was installed and the subsidence area was repaired on January 9, 2018. CAU 424: CAS 03-08-002-A308 (Landfill Cell A3-8): Lava rock, used to mark the two eastern monument locations, was noted as missing during the inspection. The lava rock was replaced on January 9, 2018. CAU 453: Five large animal burrows, located near the east–central portion of cover, was noted during the inspection. Eight additional animal burrows were discovered during repair actions. All cover defects were repaired on January 9, 2018.« less

Lunar and temperature effects on activity of free-living desert hamsters ( Phodopus roborovskii, Satunin 1903)

NASA Astrophysics Data System (ADS)

Scheibler, Elke; Roschlau, Corinna; Brodbeck, David

2014-10-01

Time management of truly wild hamsters was investigated in their natural habitat in Alashan desert, Inner Mongolia, China during summer of 2009, 2010, and 2012. Duration of activity outside their burrows, duration of foraging walks, and nocturnal inside stays were analyzed with the aim to elucidate impact of moon, ambient, and soil temperature. Animal data were determined using radio frequency identification (RFID) technique; for that purpose, individuals were caught in the field and marked with passive transponders. Their burrows were equipped with integrated microchip readers and photosensors for the detection of movements into or out of the burrow. Lunar impact was analyzed based on moon phase (full, waning, new, and waxing moons) and moon disk size. A prolongation of aboveground activity was shown with increasing moon disk size (Spearman ρ = 0.237; p = 0.025) which was caused by earlier onsets (ρ =-0.161; p = 0.048); additionally, foraging walks took longer (Pearson r = 0.037; p = 0.037). Temperature of different periods of time was analyzed, i.e., mean of whole day, of the activity phase, minimum, and maximum. Moreover, this was done for the current day and the previous 3 days. Overall, increasing ambient and soil temperatures were associated with shortening of activity by earlier offsets of activity and shorter nocturnal stays inside their burrows. Most influential temperatures for activity duration were the maximum ambient temperature, 3 days before (stepwise regression analysis R = 0.499; R 2 = 0.249; F = 7.281; p = 0.013) and soil temperature during activity phase, 1 day before ( R = 0.644; R 2 = 0.283; F = 7.458; p = 0.004).

Grass height and transmission ecology of Echinococcus multilocularis in Tibetan communities, China.

PubMed

Wang, Qian; Raoul, Francis; Budke, Christine; Craig, Philip S; Xiao, Yong-fu; Vuitton, Dominique A; Campos-Ponce, Maiza; Qiu, Dong-chuan; Pleydell, David; Giraudoux, Patrick

2010-01-05

Alveolar echinococcosis is a major zoonosis of public health significance in western China. Overgrazing was recently assumed as a potential risk factor for transmission of alveolar echinococcosis. The research was designed to further test the overgrazing hypothesis by investigating how overgrazing influenced the burrow density of intermediate host small mammals and how the burrow density of small mammals was associated with dog Echinococcus multilocularis infection. The study sites were chosen by previous studies which found areas where the alveolar echinococcosis was prevalent. The data, including grass height, burrow density of intermediate host small mammals, dog and fox fecal samples as well as Global Positioning System (GPS) position, were collected from field investigations in Shiqu County, Sichuan Province, China. The fecal samples were analyzed using copro-PCR. The worms, teeth, bones and hairs in the fecal samples were visually examined. Single factor and multifactor analyses tools including chi square and generalized linear models were applied to these data. By using grass height as a proxy of grazing pressure in the homogenous pasture, this study found that taller grass in the pasture led to lower small mammals' burrow density (chi(2) = 4.670, P = 0.031, coefficient = -1.570). The Echinococcus multilocularis worm burden in dogs was statistically significantly related to the maximum density of the intermediate host Ochotona spp. (chi(2) = 5.250, P = 0.022, coefficient = 0.028). The prevalence in owned dogs was positively correlated to the number of stray dogs seen within a 200 meter radius (Wald chi(2) = 8.375, P = 0.004, odds ratio = 1.198). Our findings support the hypothesis that overgrazing promotes transmission of alveolar echinococcosis and confirm the role of stray dogs in the transmission of alveolar echinococcosis.

First account of apochlorotic diatoms from intertidal sand of a south Florida beach

NASA Astrophysics Data System (ADS)

Blackburn, Michele V.; Hannah, Fiona; Rogerson, Andrew

2009-10-01

During the period January to December 2004, monthly intertidal sand samples were collected from John U. Lloyd State Park beach, Florida. This study is the first to report on spatial and temporal distributions of heterotrophic (apochlorotic) diatoms in a sub-tropical beach, or indeed any sandy beach. Two non-pigmented, apochlorotic diatom morphotypes (strains III and IV) were consistently isolated from two intertidal beach sites and neither conformed to the morphologies of described species. Apochlorotic diatoms were found throughout the year and formed significant peaks in April, attaining total diatom counts of 71.1 and 94.9 cells g -1 wet sand, for the upper tidal zone and lower tidal zone, respectively. Valve morphology is described in detail for the two diatom morphotypes isolated from the beach sites (strains III and IV). Growth responses to changes in salinity (reflecting those of the intertidal zone) were examined in the laboratory for these diatoms. Both morphotypes were euryhaline, tolerating salinities between 10 and 50, and maximum growth rates were achieved at salinities between 20 and 40. Diatoms grew equally well whether grown in the light or the dark and showed no evidence of pigments when viewed by epifluorescence microscopy. The ability of diatoms to burrow into agar and carrageenan at different concentrations was tested. Both morphotypes were observed to develop burrows through non-nutrient agar up to twice the standard concentration (30 g agar l -1). The ease with which these heterotrophic diatoms formed burrows suggests that they were digesting these complex carbohydrates (i.e. phycocolloids) as a nutrient source. Strain IV, however, failed to burrow in a different phycocolloid, carrageenan. Similar degradative actions in the field might have implications for the breakdown of recalcitrant materials or allow diatoms to effectively compete with bacteria for carbon and nutrients.

A 200 year chronology of burrowing mayflies (Hexagenia spp.) in Saginaw Bay

USGS Publications Warehouse

Schloesser, Donald W.; Robbins, John A.; Matisoff, Gerald; Nalepa, Thomas F.; Morehead, Nancy R.

2014-01-01

After an absence of 50 years, burrowing mayflies (Hexagenia spp.) colonized western Lake Erie which led to interest in whether this fauna can be used to measure recovery in nearshore waters throughout the Great Lakes. However, in many areas we do not know if mayflies were native/endemic and thus, whether recovery is a logical measure to assess progress of recovery. In the present study, we construct a chronologic record of relative abundance of burrowing mayflies in Saginaw Bay by the use of mayfly tusks and radionuclides in sediments (i.e., a paleoecologic record) and historic records of mayfly nymphs in the bay. These records reveal that mayflies: (1) were few before 1799, which indicates that nymphs were probably native/endemic in the bay, (2) increased between 1799 and 1807 and remained at relatively high levels between 1807 and 1965, probably in response to increased nutrient run-off from the watershed, (3) declined dramatically between 1965 and 1973, probably as a result of excessive eutrophication in the mid-1950s; and, (4) were few and highly variable between 1973 and 2001, probably as a result of low and unstable abundances of mayfly nymphs. Historic records verify that nymphs disappeared in the bay in the late-1950s to early-1960s which is in agreement with the paleoecologic record. Reoccurrence of low abundances of nymphs in the bay between 1991 and 2008 and comparison of chronologic records of nymphs in Saginaw Bay and western Lake Erie suggest that mayflies may return to Saginaw Bay in the early-21st century. Undoubtedly, watershed conservation and three decades of pollution abatement have set the stage for a recovery of burrowing mayflies in Saginaw Bay, and possibly in other areas of the Great Lakes.

Neuroethological validation of an experimental apparatus to evaluate oriented and non-oriented escape behaviours: Comparison between the polygonal arena with a burrow and the circular enclosure of an open-field test.

PubMed

Biagioni, Audrey Francisco; dos Anjos-Garcia, Tayllon; Ullah, Farhad; Fisher, Isaac René; Falconi-Sobrinho, Luiz Luciano; de Freitas, Renato Leonardo; Felippotti, Tatiana Tocchini; Coimbra, Norberto Cysne

2016-02-01

Inhibition of GABAergic neural inputs to dorsal columns of the periaqueductal grey matter (dPAG), posterior (PH) and dorsomedial (DMH) hypothalamic nuclei elicits distinct types of escape behavioural reactions. To differentiate between the variety and intensity of panic-related behaviours, the pattern of defensive behaviours evoked by blockade of GABAA receptors in the DMH, PH and dPAG were compared in a circular open-field test and in a recently designed polygonal arena. In the circular open-field, the defensive behaviours induced by microinjection of bicuculline into DMH and PH were characterised by defensive alertness behaviour and vertical jumps preceded by rearing exploratory behaviour. On the other hand, explosive escape responses interspersed with horizontal jumps and freezing were observed after the blockade of GABAA receptors on dPAG neurons. In the polygonal arena apparatus, the escape response produced by GABAergic inhibition of DMH and PH neurons was directed towards the burrow. In contrast, the blockade of GABAA receptors in dPAG evoked non-oriented escape behaviour characterised by vigorous running and horizontal jumps in the arena. Our findings support the hypothesis that the hypothalamic nuclei organise oriented escape behavioural responses whereas non-oriented escape is elaborated by dPAG neurons. Additionally, the polygonal arena with a burrow made it easy to discriminate and characterise these two different patterns of escape behavioural responses. In this sense, the polygonal arena with a burrow can be considered a good methodological tool to discriminate between these two different patterns of escape behavioural responses and is very useful as a new experimental animal model of panic attacks. Copyright © 2015 Elsevier B.V. All rights reserved.

Seismic Forecasting of Eruptions at Dormant StratoVolcanoes

NASA Astrophysics Data System (ADS)

White, R. A.

2015-12-01

Seismic monitoring data provide important constraints on tracking magmatic ascent and eruption. Based on direct experience with over 25 and review of over 10 additional eruption sequences at 24 volcanoes, we have identified 4 phases of precursory seismicity. 1) Deep (>20 km) low frequency (DLF) earthquakes occur near the base of the crust as magma rises toward crustal reservoirs. This seismicity is the most difficult to observe, owing to generally small magnitudes (M<2.5) the significant depth. 2) Distal volcano-tectonic (DVT) earthquakes occur on tectonic faults from a 2 to 30+ km distance laterally from (not beneath) the eventual eruption site as magma intrudes into and rises out of upper crustal reservoirs to depths of 2-3 km. A survey of 111 eruptions of 83 previously dormant volcanoes, (including all eruptions of VEI >4 since 1955) shows they were all preceded by significant DVT seismicity, usually felt. This DVT seismicity is easily observed owing to magnitudes generally reaching M>3.5. The cumulative DVT energy correlates to the intruding magma volume. 3) Low frequency (LF) earthquakes, LF tremor and contained explosions occur as magma interacts with the shallow hydrothermal system (<2 km depth), while the distal seismicity dies off.4) Shortly after this, repetitive self-similar proximal seismicity may occur and may dominate the seismic records as magma rises to the surface. We present some examples of this seismic progression to demonstrate that data from a single short-period vertical station are often sufficient to forecast eruption onsets.

Modelling and forecasting 3D-hypocentre seismicity in the Kanto region

NASA Astrophysics Data System (ADS)

Guo, Yicun; Zhuang, Jiancang; Hirata, Naoshi

2018-04-01

This study analyses the seismicity in the Kanto region by fitting the 2D-epicentre and 3D-hypocentre ETAS models to the JMA catalogue for events above magnitude M4.0. In the 3D ETAS model, the focal depth is assumed to follow the beta distribution. Compared with results from the 2D-epicentre ETAS model, the 3D ETAS model greatly improves the data fitting. In addition, the stochastic reconstruction method is used when validating the results of the 3D ETAS model, with results indicating that the shallow events are more productive and their aftershocks decay slightly faster in the time and epicentre dimensions. We also study the changes of seismicity patterns before and after the 2011 Tohoku earthquake. The direct aftershocks of events from the post-Tohoku period are more diffusive in time and epicentre but more concentrated in depth. The seismicity rate increases significantly following the Tohoku earthquake, especially along the interface of the subducting Pacific plate. The curve of cumulative background probabilities for events above M4.0 implies that the background rate decays back to the pre-Tohoku level in about 5 years after the Tohoku earthquake. However, the occurrence rates of smaller events (from M2.0 to M4.0) indicate that the adjustments of local stress field continue at finer scales. Finally, we verify that the 3D model can reproduce the focal depths better than the 2D model and improve the forecasting performance.

Implementations of the Navy Coupled Ocean Data Assimilation System at the Naval Oceanographic Office

DTIC Science & Technology

2010-06-01

Clim ( GDEM ) +−2std = 95.4% GDEM POE at Depth MODAS Synthetic Profile T,S with Sat SST Local OI of Nearby Valid Data Global3D Analysis Fig. 3. NCODA...observation (Obs), NCODA analysis (Anal), RNCOM nowcast (NCST) for today, RNCOM 24–hour forecast (FCST) from yesterday, GDEM climatology (Clim), and the

USDA Foreign Agricultural Service overview for operational monitoring of current crop conditions and production forecasts.

NASA Astrophysics Data System (ADS)

Crutchfield, J.

2016-12-01

The presentation will discuss the current status of the International Production Assessment Division of the USDA ForeignAgricultural Service for operational monitoring and forecasting of current crop conditions, and anticipated productionchanges to produce monthly, multi-source consensus reports on global crop conditions including the use of Earthobservations (EO) from satellite and in situ sources.United States Department of Agriculture (USDA) Foreign Agricultural Service (FAS) International Production AssessmentDivision (IPAD) deals exclusively with global crop production forecasting and agricultural analysis in support of the USDAWorld Agricultural Outlook Board (WAOB) lockup process and contributions to the World Agricultural Supply DemandEstimates (WASE) report. Analysts are responsible for discrete regions or countries and conduct in-depth long-termresearch into national agricultural statistics, farming systems, climatic, environmental, and economic factors affectingcrop production. IPAD analysts become highly valued cross-commodity specialists over time, and are routinely soughtout for specialized analyses to support governmental studies. IPAD is responsible for grain, oilseed, and cotton analysison a global basis. IPAD is unique in the tools it uses to analyze crop conditions around the world, including customweather analysis software and databases, satellite imagery and value-added image interpretation products. It alsoincorporates all traditional agricultural intelligence resources into its forecasting program, to make the fullest use ofavailable information in its operational commodity forecasts and analysis. International travel and training play animportant role in learning about foreign agricultural production systems and in developing analyst knowledge andcapabilities.

Operational use of the AIRS Total Column Ozone Retrievals along with the RGB Airmass Product as Part of the GOES-R Proving Ground

NASA Technical Reports Server (NTRS)

Folmer, M.; Zavodsky, Bradley; Molthan, Andrew

2012-01-01

The Red, Green, Blue (RGB) Air Mass product has been demonstrated in the GOES ]R Proving Ground as a possible decision aid. Forecasters have been trained on the usefulness of identifying stratospheric intrusions and potential vorticity (PV) anomalies that can lead to explosive cyclogenesis, genesis of mesoscale convective systems (MCSs), or the transition of tropical cyclones to extratropical cyclones. It has also been demonstrated to distinguish different air mass types from warm, low ozone air masses to cool, high ozone air masses and the various interactions with the PV anomalies. To assist the forecasters in understanding the stratospheric contribution to high impact weather systems, the Atmospheric Infrared Sounder (AIRS) Total Column Ozone Retrievals have been made available as an operational tool. These AIRS retrievals provide additional information on the amount of ozone that is associated with the red coloring seen in the RGB Air Mass product. This paper discusses how the AIRS retrievals can be used to quantify the red coloring in RGB Air Mass product. These retrievals can be used to diagnose the depth of the stratospheric intrusions associated with different types of weather systems and provide the forecasters decision aid tools that can improve the quality of forecast products.

The Development of New Solar Indices for use in Thermospheric Density Modeling

NASA Technical Reports Server (NTRS)

Tobiska, W. Kent; Bouwer, S. Dave; Bowman, Bruce R.

2006-01-01

New solar indices have been developed to improve thermospheric density modeling for research and operational purposes. Out of 11 new and 4 legacy indices and proxies, we have selected three (F10.7, S10.7, and M10.7) for use in the new JB2006 empirical thermospheric density model. In this work, we report on the development of these solar irradiance indices. The rationale for their use, their definitions, and their characteristics, including the ISO 21348 spectral category and sub-category, wavelength range, solar source temperature region, solar source feature, altitude region of terrestrial atmosphere absorption at unit optical depth, and terrestrial atmosphere thermal processes in the region of maximum energy absorption, are described. We also summarize for each solar index, the facility and instrument(s) used to observe the solar emission, the time frame over which the data exist, the measurement cadence, the data latency, and the research as well as operational availability. The new solar indices are provided in forecast (http://SpaceWx.com) as well as real-time and historical (http://sol.spacenvironment.net/jb2006/) time frames. We describe the forecast methodology, compare results with actual data for active and quiet solar conditions, and compare improvements in F10.7 forecasting with legacy High Accuracy Satellite Drag Model (HASDM) and NOAA SEC forecasts.

Seasonal sea ice predictions for the Arctic based on assimilation of remotely sensed observations

NASA Astrophysics Data System (ADS)

Kauker, F.; Kaminski, T.; Ricker, R.; Toudal-Pedersen, L.; Dybkjaer, G.; Melsheimer, C.; Eastwood, S.; Sumata, H.; Karcher, M.; Gerdes, R.

2015-10-01

The recent thinning and shrinking of the Arctic sea ice cover has increased the interest in seasonal sea ice forecasts. Typical tools for such forecasts are numerical models of the coupled ocean sea ice system such as the North Atlantic/Arctic Ocean Sea Ice Model (NAOSIM). The model uses as input the initial state of the system and the atmospheric boundary condition over the forecasting period. This study investigates the potential of remotely sensed ice thickness observations in constraining the initial model state. For this purpose it employs a variational assimilation system around NAOSIM and the Alfred Wegener Institute's CryoSat-2 ice thickness product in conjunction with the University of Bremen's snow depth product and the OSI SAF ice concentration and sea surface temperature products. We investigate the skill of predictions of the summer ice conditions starting in March for three different years. Straightforward assimilation of the above combination of data streams results in slight improvements over some regions (especially in the Beaufort Sea) but degrades the over-all fit to independent observations. A considerable enhancement of forecast skill is demonstrated for a bias correction scheme for the CryoSat-2 ice thickness product that uses a spatially varying scaling factor.

Earthquake focal mechanism forecasting in Italy for PSHA purposes

NASA Astrophysics Data System (ADS)

Roselli, Pamela; Marzocchi, Warner; Mariucci, Maria Teresa; Montone, Paola

2018-01-01

In this paper, we put forward a procedure that aims to forecast focal mechanism of future earthquakes. One of the primary uses of such forecasts is in probabilistic seismic hazard analysis (PSHA); in fact, aiming at reducing the epistemic uncertainty, most of the newer ground motion prediction equations consider, besides the seismicity rates, the forecast of the focal mechanism of the next large earthquakes as input data. The data set used to this purpose is relative to focal mechanisms taken from the latest stress map release for Italy containing 392 well-constrained solutions of events, from 1908 to 2015, with Mw ≥ 4 and depths from 0 down to 40 km. The data set considers polarity focal mechanism solutions until to 1975 (23 events), whereas for 1976-2015, it takes into account only the Centroid Moment Tensor (CMT)-like earthquake focal solutions for data homogeneity. The forecasting model is rooted in the Total Weighted Moment Tensor concept that weighs information of past focal mechanisms evenly distributed in space, according to their distance from the spatial cells and magnitude. Specifically, for each cell of a regular 0.1° × 0.1° spatial grid, the model estimates the probability to observe a normal, reverse, or strike-slip fault plane solution for the next large earthquakes, the expected moment tensor and the related maximum horizontal stress orientation. These results will be available for the new PSHA model for Italy under development. Finally, to evaluate the reliability of the forecasts, we test them with an independent data set that consists of some of the strongest earthquakes with Mw ≥ 3.9 occurred during 2016 in different Italian tectonic provinces.

The Impact of Ocean Data Assimilation on Seasonal-to-Interannual Forecasts: A Case Study of the 2006 El Nino Event

NASA Technical Reports Server (NTRS)

Yang, Shu-Chih; Rienecker, Michele; Keppenne, Christian

2010-01-01

This study investigates the impact of four different ocean analyses on coupled forecasts of the 2006 El Nino event. Forecasts initialized in June 2006 using ocean analyses from an assimilation that uses flow-dependent background error covariances are compared with those using static error covariances that are not flow dependent. The flow-dependent error covariances reflect the error structures related to the background ENSO instability and are generated by the coupled breeding method. The ocean analyses used in this study result from the assimilation of temperature and salinity, with the salinity data available from Argo floats. Of the analyses, the one using information from the coupled bred vectors (BV) replicates the observed equatorial long wave propagation best and exhibits more warming features leading to the 2006 El Nino event. The forecasts initialized from the BV-based analysis agree best with the observations in terms of the growth of the warm anomaly through two warming phases. This better performance is related to the impact of the salinity analysis on the state evolution in the equatorial thermocline. The early warming is traced back to salinity differences in the upper ocean of the equatorial central Pacific, while the second warming, corresponding to the mature phase, is associated with the effect of the salinity assimilation on the depth of the thermocline in the western equatorial Pacific. The series of forecast experiments conducted here show that the structure of the salinity in the initial conditions is important to the forecasts of the extension of the warm pool and the evolution of the 2006 El Ni o event.

Development of Parallel Code for the Alaska Tsunami Forecast Model

NASA Astrophysics Data System (ADS)

Bahng, B.; Knight, W. R.; Whitmore, P.

2014-12-01

The Alaska Tsunami Forecast Model (ATFM) is a numerical model used to forecast propagation and inundation of tsunamis generated by earthquakes and other means in both the Pacific and Atlantic Oceans. At the U.S. National Tsunami Warning Center (NTWC), the model is mainly used in a pre-computed fashion. That is, results for hundreds of hypothetical events are computed before alerts, and are accessed and calibrated with observations during tsunamis to immediately produce forecasts. ATFM uses the non-linear, depth-averaged, shallow-water equations of motion with multiply nested grids in two-way communications between domains of each parent-child pair as waves get closer to coastal waters. Even with the pre-computation the task becomes non-trivial as sub-grid resolution gets finer. Currently, the finest resolution Digital Elevation Models (DEM) used by ATFM are 1/3 arc-seconds. With a serial code, large or multiple areas of very high resolution can produce run-times that are unrealistic even in a pre-computed approach. One way to increase the model performance is code parallelization used in conjunction with a multi-processor computing environment. NTWC developers have undertaken an ATFM code-parallelization effort to streamline the creation of the pre-computed database of results with the long term aim of tsunami forecasts from source to high resolution shoreline grids in real time. Parallelization will also permit timely regeneration of the forecast model database with new DEMs; and, will make possible future inclusion of new physics such as the non-hydrostatic treatment of tsunami propagation. The purpose of our presentation is to elaborate on the parallelization approach and to show the compute speed increase on various multi-processor systems.

Validation of an ocean shelf model for the prediction of mixed-layer properties in the Mediterranean Sea west of Sardinia

NASA Astrophysics Data System (ADS)

Onken, Reiner

2017-04-01

The Regional Ocean Modeling System (ROMS) has been employed to explore the sensitivity of the forecast skill of mixed-layer properties to initial conditions, boundary conditions, and vertical mixing parameterisations. The initial and lateral boundary conditions were provided by the Mediterranean Forecasting System (MFS) or by the MERCATOR global ocean circulation model via one-way nesting; the initial conditions were additionally updated through the assimilation of observations. Nowcasts and forecasts from the weather forecast models COSMO-ME and COSMO-IT, partly melded with observations, served as surface boundary conditions. The vertical mixing was parameterised by the GLS (generic length scale) scheme Umlauf and Burchard (2003) in four different set-ups. All ROMS forecasts were validated against the observations which were taken during the REP14-MED survey to the west of Sardinia. Nesting ROMS in MERCATOR and updating the initial conditions through data assimilation provided the best agreement of the predicted mixed-layer properties with the time series from a moored thermistor chain. Further improvement was obtained by the usage of COSMO-ME atmospheric forcing, which was melded with real observations, and by the application of the k-ω vertical mixing scheme with increased vertical eddy diffusivity. The predicted temporal variability of the mixed-layer temperature was reasonably well correlated with the observed variability, while the modelled variability of the mixed-layer depth exhibited only agreement with the observations near the diurnal frequency peak. For the forecasted horizontal variability, reasonable agreement was found with observations from a ScanFish section, but only for the mesoscale wave number band; the observed sub-mesoscale variability was not reproduced by ROMS.

Hydrodynamic conditioning of diversity and functional traits in subtidal estuarine macrozoobenthic communities

NASA Astrophysics Data System (ADS)

van der Wal, Daphne; Lambert, Gwladys I.; Ysebaert, Tom; Plancke, Yves M. G.; Herman, Peter M. J.

2017-10-01

Variations in abundance and diversity of estuarine benthic macrofauna are typically described along the salinity gradient. The influence of gradients in water depth, hydrodynamic energy and sediment properties are less well known. We studied how these variables influence the distribution of subtidal macrofauna in the polyhaline zone of a temperate estuary (Westerschelde, SW Netherlands). Macrofauna density, biomass and species richness, combined in a so-called ecological richness, decreased with current velocities and median grain-size and increased with organic carbon of the sediment, in total explaining 39% of the variation. The macrofauna community composition was less well explained by the three environmental variables (approx. 12-15% in total, with current velocity explaining approx. 8%). Salinity, water depth and distance to the intertidal zone had a very limited effect on both ecological richness and the macrofauna community. The proportion of (surface) deposit feeders (including opportunistic species), decreased relative to that of omnivores and carnivores with increasing current velocity and sediment grain-size. In parallel, the proportion of burrowing sessile benthic species decreased relative to that of mobile benthic species that are able to swim. Correspondingly, spatial variations in hydrodynamics yielded distinct hotspots and coldspots in ecological richness. The findings highlight the importance of local hydrodynamic conditions for estuarine restoration and conservation. The study provides a tool based on a hydrodynamic model to assess and predict ecological richness in estuaries.

National Dam Safety Program. Hawkinsville Dam (Inventory Number NY 895), Black River Basin, Oneida County, New York. Phase I Inspection Report,

DTIC Science & Technology

1981-09-10

Animal Burrows (3) Sloughing, Subsidence or Depressions A 6 D’FI4E’ SCOPE LGCAt-t L&VtICXn~g~ , /p I .,-15-3(9/bo) 3 (L) Slope Protection i/cri_., I (5...821747IFS’ . 1(2) Undesirable Growth or Debris, Animal Burrows 946 Royeas&W’" IOiAILY 6 ~ ~~ 9 (3) Sloughing, Subsidence or Depressions NO QJEL- I rEr-f"o...Is creating a strem whieh is flowing around the rigt conrete abutment and enters the rivor a short distance dwnstrom of the abutment. Ve sugest that

Social context affects tail displays by Phrynocephalus vlangalii lizards from China

PubMed Central

Peters, Richard A.; Ramos, Jose A.; Hernandez, Juan; Wu, Yayong; Qi, Yin

2016-01-01

Competition between animals for limited resources often involves signaling to establish ownership or dominance. In some species, the defended resource relates to suitable thermal conditions and refuge from predators. This is particularly true of burrow-dwelling lizards such as the Qinghai toad-headed agama (Phrynocephalus vlangalii), which are found on the Tibetan plateau of western China. Male and female lizards occupy separate burrows, which are vital for anti-predator behaviour during warmer months when lizards are active and, crucially, provide shelter from harsh winter conditions. These lizards are readily observed signaling by means of tail displays on the sand dunes they inhabit. Given the selective pressure to hold such a resource, both males and females should exhibit territorial behaviour and we considered this study system to examine in detail how social context influences motion based territorial signaling. We confirmed that territorial signaling was used by both sexes, and by adopting a novel strategy that permitted 3D reconstruction of tail displays, we identified significant variation due to social context. However, signal structure was not related to lizard morphology. Clearly, the burrow is a highly valued resource and we suggest that additional variation in signaling behaviour might be mediated by resource quality. PMID:27526625

Impact of overgrazing on the transmission of Echinococcus multilocularis in Tibetan pastoral communities of Sichuan Province, China.

PubMed

Wang, Qian; Xiao, Yong-fu; Vuitton, Dominique A; Schantz, Peter M; Raoul, Francis; Budke, Christine; Campos-Ponce, Maiza; Craig, Philip S; Giraudoux, Patrick

2007-02-05

Overgrazing was assumed to increase the population density of small mammals that are the intermediate hosts of Echinococcus multilocularis, the pathogen of alveolar echinococcosis in the Qinghai Tibet Plateau. This research tested the hypothesis that overgrazing might promote Echinococcus multilocularis transmission through increasing populations of small mammal, intermediate hosts in Tibetan pastoral communities. Grazing practices, small mammal indices and dog Echinococcus multilocularis infection data were collected to analyze the relation between overgrazing and Echinococcus multilocularis transmission using nonparametric tests and multiple stepwise logistic regression. In the investigated area, raising livestock was a key industry. The communal pastures existed and the available forage was deficient for grazing. Open (common) pastures were overgrazed and had higher burrow density of small mammals compared with neighboring fenced (private) pastures; this high overgrazing pressure on the open pastures measured by neighboring fenced area led to higher burrow density of small mammals in open pastures. The median burrow density of small mammals in open pastures was independently associated with nearby canine Echinococcus multilocularis infection (P = 0.003, OR = 1.048). Overgrazing may promote the transmission of Echinococcus multilocularis through increasing the population density of small mammals.

Multiple mechanisms sustain a plant-animal facilitation on a coastal ecotone

PubMed Central

He, Qiang; Cui, Baoshan

2015-01-01

Theory suggests that species distributions are expanded by positive species interactions, but the importance of facilitation in expanding species distributions at physiological range limits has not been widely recognized. We investigated the effects of the nurse shrub Tamarix chinensis on the crab Helice tientsinensis on the terrestrial borders of salt marshes, a typical coastal ecotone, where Tamarix and Helice were on their lower and upper elevational distribution edges, respectively. Crab burrows were abundant under Tamarix, but were absent in open areas between Tamarix. Removing Tamarix decreased associated crab burrows with time, while simulating Tamarix in open areas by shading, excluding predators, and adding Tamarix branches as crab food, increased crab burrows. Measurements of soil and microclimate factors showed that removing Tamarix increased abiotic stress, while simulating Tamarix by shading decreased abiotic stress. Survival of tethered crabs was high only when protected from desiccation and predation. Thus, by alleviating abiotic and biotic stresses, as well as by food provision, Tamarix expanded the upper intertidal distribution of Helice. Our study provides clear evidence for the importance of facilitation in expanding species distributions at their range limits, and suggests that facilitation is a crucial biological force maintaining the ecotones between ecosystems. PMID:25721758

Multiple mechanisms sustain a plant-animal facilitation on a coastal ecotone.

PubMed

He, Qiang; Cui, Baoshan

2015-02-27

Theory suggests that species distributions are expanded by positive species interactions, but the importance of facilitation in expanding species distributions at physiological range limits has not been widely recognized. We investigated the effects of the nurse shrub Tamarix chinensis on the crab Helice tientsinensis on the terrestrial borders of salt marshes, a typical coastal ecotone, where Tamarix and Helice were on their lower and upper elevational distribution edges, respectively. Crab burrows were abundant under Tamarix, but were absent in open areas between Tamarix. Removing Tamarix decreased associated crab burrows with time, while simulating Tamarix in open areas by shading, excluding predators, and adding Tamarix branches as crab food, increased crab burrows. Measurements of soil and microclimate factors showed that removing Tamarix increased abiotic stress, while simulating Tamarix by shading decreased abiotic stress. Survival of tethered crabs was high only when protected from desiccation and predation. Thus, by alleviating abiotic and biotic stresses, as well as by food provision, Tamarix expanded the upper intertidal distribution of Helice. Our study provides clear evidence for the importance of facilitation in expanding species distributions at their range limits, and suggests that facilitation is a crucial biological force maintaining the ecotones between ecosystems.

Mima mounds in the Kenya highlands: significance for the Dalquest-Scheffer hypothesis.

PubMed

Cox, George W; Gakahu, Christopher G

1983-03-01

The Dalquest-Scheffer Hypothesis that Mima mounds in western North America are the long-term product of burrowing activities of geomyid pocket gophers was tested by examination of areas of similar topography in the highlands of Kenya. Two mound areas, located near Nyahururu at an elevation of about 2,400 m, were studied in detail. The mounds ranged from less than 25 cm to 2 m in height and from a few m to about 20 m in diameter, and were not the remains of large termite nests. Populations of the rhizomyid mole rat, Tachyoryctes splendens, a fossorial rodent similar in morphology and social behavior to geomyid pocket gophers, were associated with these mounds. Mound density and dispersion pattern were similar to North American Mima mounds, and the distribution of fresh soil heaps indicated that the activities of these animals were mound-centered. A shallow laterite hardpan underlay these mound areas, fulfilling another requirement of the Dalquest-Scheffer hypothesis. It is concluded that Mima mounds are the product of the burrowing of fossorial rodents such as pocket gophers and mole rats, and that these two groups are convergent in morphology, burrowing behavior, and impact on the landscape.

Monitoring Eastern Spadefoot (Scaphiopus holbrookii) response to weather with the use of a passive integrated transponder (PIT) system

USGS Publications Warehouse

Ryan, Kevin J.; Calhoun, Aram J.K.; Timm, Brad C.; Zydlewski, Joseph D.

2015-01-01

Eastern Spadefoots (Scaphiopus holbrookii) are probably one of the least-understood amphibian species in the United States. In New England, populations are localized and it is likely that some populations go undocumented because of the species' cryptic habits. We used passive integrated transponders (PIT tags) to monitor burrow emergence with the aid of continuously running, stationary (but portable) PIT tag readers. We monitored the activity of individual Eastern Spadefoots by placing circular antennae directly over burrows of PIT tag-implanted individuals. We monitored 18 Eastern Spadefoots from 1 to 84 nights in the spring, summer, and fall of 2009–2011. Our results indicate that, on average, Eastern Spadefoots emerged on 43% of the nights that they were monitored. Nights when Eastern Spadefoots emerged were warmer and more humid than nonemergence nights. Eastern Spadefoots were also much more likely to emerge on a given night if they had emerged the night before. Our results have improved the understanding of Eastern Spadefoot burrow-emergence patterns in the northeast region. Our findings may considerably enhance the prospect of employing nocturnal visual encounter surveys as a method for monitoring known, and detecting previously undocumented, populations of this species.

Burrowing hard corals occurring on the sea floor since 80 million years ago.

PubMed

Sentoku, Asuka; Tokuda, Yuki; Ezaki, Yoichi

2016-04-14

We describe a previously unknown niche for hard corals in the small, bowl-shaped, solitary scleractinian, Deltocyathoides orientalis (Family Turbinoliidae), on soft-bottom substrates. Observational experiments were used to clarify how the sea floor niche is exploited by turbinoliids. Deltocyathoides orientalis is adapted to an infaunal mode of life and exhibits behaviours associated with automobility that include burrowing into sediments, vertical movement through sediments to escape burial, and recovery of an upright position after being overturned. These behaviours were achieved through repeated expansion and contraction of their peripheral soft tissues, which constitute a unique muscle-membrane system. Histological analysis showed that these muscle arrangements were associated with deeply incised inter-costal spaces characteristic of turbinoliid corals. The oldest known turbinoliid, Bothrophoria ornata, which occurred in the Cretaceous (Campanian), also possessed a small, conical skeleton with highly developed costae. An infaunal mode of life became available to turbinoliids due to the acquisition of automobility through the muscle-membrane system at least 80 million years ago. The newly discovered active burrowing strategies described herein provide new insights into the use of an unattached mode of life by corals inhabiting soft-bottom substrates throughout the Phanerozoic.

Dinosaur Footprints and Other Ichnofauna from the Cretaceous Kem Kem Beds of Morocco

PubMed Central

Ibrahim, Nizar; Varricchio, David J.; Sereno, Paul C.; Wilson, Jeff A.; Dutheil, Didier B.; Martill, David M.; Baidder, Lahssen; Zouhri, Samir

2014-01-01

We describe an extensive ichnofossil assemblage from the likely Cenomanian-age ‘lower’ and ‘upper’ units of the ‘Kem Kem beds’ in southeastern Morocco. In the lower unit, trace fossils include narrow vertical burrows in cross-bedded sandstones and borings in dinosaur bone, with the latter identified as the insect ichnotaxon Cubiculum ornatus. In the upper unit, several horizons preserve abundant footprints from theropod dinosaurs. Sauropod and ornithischian footprints are much rarer, similar to the record for fossil bone and teeth in the Kem Kem assemblage. The upper unit also preserves a variety of invertebrate traces including Conichnus (the resting trace of a sea-anemone), Scolicia (a gastropod trace), Beaconites (a probable annelid burrow), and subvertical burrows likely created by crabs for residence and detrital feeding on a tidal flat. The ichnofossil assemblage from the Upper Cretaceous Kem Kem beds contributes evidence for a transition from predominantly terrestrial to marine deposition. Body fossil and ichnofossil records together provide a detailed view of faunal diversity and local conditions within a fluvial and deltaic depositional setting on the northwestern coast of Africa toward the end of the Cretaceous. PMID:24603467

Genetic adaptations of the plateau zokor in high-elevation burrows.

PubMed

Shao, Yong; Li, Jin-Xiu; Ge, Ri-Li; Zhong, Li; Irwin, David M; Murphy, Robert W; Zhang, Ya-Ping

2015-11-25

The plateau zokor (Myospalax baileyi) spends its entire life underground in sealed burrows. Confronting limited oxygen and high carbon dioxide concentrations, and complete darkness, they epitomize a successful physiological adaptation. Here, we employ transcriptome sequencing to explore the genetic underpinnings of their adaptations to this unique habitat. Compared to Rattus norvegicus, genes belonging to GO categories related to energy metabolism (e.g. mitochondrion and fatty acid beta-oxidation) underwent accelerated evolution in the plateau zokor. Furthermore, the numbers of positively selected genes were significantly enriched in the gene categories involved in ATPase activity, blood vessel development and respiratory gaseous exchange, functional categories that are relevant to adaptation to high altitudes. Among the 787 genes with evidence of parallel evolution, and thus identified as candidate genes, several GO categories (e.g. response to hypoxia, oxygen homeostasis and erythrocyte homeostasis) are significantly enriched, are two genes, EPAS1 and AJUBA, involved in the response to hypoxia, where the parallel evolved sites are at positions that are highly conserved in sequence alignments from multiple species. Thus, accelerated evolution of GO categories, positive selection and parallel evolution at the molecular level provide evidences to parse the genetic adaptations of the plateau zokor for living in high-elevation burrows.

Burrowing hard corals occurring on the sea floor since 80 million years ago

NASA Astrophysics Data System (ADS)

Sentoku, Asuka; Tokuda, Yuki; Ezaki, Yoichi

2016-04-01

We describe a previously unknown niche for hard corals in the small, bowl-shaped, solitary scleractinian, Deltocyathoides orientalis (Family Turbinoliidae), on soft-bottom substrates. Observational experiments were used to clarify how the sea floor niche is exploited by turbinoliids. Deltocyathoides orientalis is adapted to an infaunal mode of life and exhibits behaviours associated with automobility that include burrowing into sediments, vertical movement through sediments to escape burial, and recovery of an upright position after being overturned. These behaviours were achieved through repeated expansion and contraction of their peripheral soft tissues, which constitute a unique muscle-membrane system. Histological analysis showed that these muscle arrangements were associated with deeply incised inter-costal spaces characteristic of turbinoliid corals. The oldest known turbinoliid, Bothrophoria ornata, which occurred in the Cretaceous (Campanian), also possessed a small, conical skeleton with highly developed costae. An infaunal mode of life became available to turbinoliids due to the acquisition of automobility through the muscle-membrane system at least 80 million years ago. The newly discovered active burrowing strategies described herein provide new insights into the use of an unattached mode of life by corals inhabiting soft-bottom substrates throughout the Phanerozoic.

American badgers selectively excavate burrows in areas used by black-footed ferrets: implications for predator avoidance

USGS Publications Warehouse

Eads, David A.; Biggins, Dean E.; Livieri, Travis M.; Millspaugh, Joshua J.

2013-01-01

We evaluated how American badgers (Taxidea taxus) might exert selective pressure on black-footed ferrets (Mustela nigripes) to develop antipredator defenses. In a colony of black-tailed prairie dogs (Cynomys ludovicianus) in South Dakota, badgers concentrated their activities where burrow openings and prairie dogs were abundant, a selective behavior that was exhibited by ferrets in the same colony. Badgers excavated burrows more often when in areas recently used by a ferret, suggesting that badgers hunt ferrets or steal prey from ferrets, or both. We also conducted an analysis of survival studies for ferrets and Siberian polecats (M. eversmanii) released onto prairie dog colonies. This polecat is the ferret's ecological equivalent but evolved without a digging predator. Badgers accounted for 30.0% of predation on polecats and 5.5% of predation on ferrets. In contrast, both polecats and ferrets have evolutionary experience with canids, providing a plausible explanation for the similar relative impact of coyotes (Canis latrans) on them (65.0% and 67.1% of predation, respectively). We hypothesize that ferrets and badgers coexist because ferrets are superior at exploitation competition and are efficient at avoiding badgers, and badgers are superior at interference competition.

Non-destructive X-ray Computed Tomography (XCT) Analysis of Sediment Variance in Marine Cores

NASA Astrophysics Data System (ADS)

Oti, E.; Polyak, L. V.; Dipre, G.; Sawyer, D.; Cook, A.

2015-12-01

Benthic activity within marine sediments can alter the physical properties of the sediment as well as indicate nutrient flux and ocean temperatures. We examine burrowing features in sediment cores from the western Arctic Ocean collected during the 2005 Healy-Oden TransArctic Expedition (HOTRAX) and from the Gulf of Mexico Integrated Ocean Drilling Program (IODP) Expedition 308. While traditional methods for studying bioturbation require physical dissection of the cores, we assess burrowing using an X-ray computed tomography (XCT) scanner. XCT noninvasively images the sediment cores in three dimensions and produces density sensitive images suitable for quantitative analysis. XCT units are recorded as Hounsfield Units (HU), where -999 is air, 0 is water, and 4000-5000 would be a higher density mineral, such as pyrite. We rely on the fundamental assumption that sediments are deposited horizontally, and we analyze the variance over each flat-lying slice. The variance describes the spread of pixel values over a slice. When sediments are reworked, drawing higher and lower density matrix into a layer, the variance increases. Examples of this can be seen in two slices in core 19H-3A from Site U1324 of IODP Expedition 308. The first slice, located 165.6 meters below sea floor consists of relatively undisturbed sediment. Because of this, the majority of the sediment values fall between 1406 and 1497 HU, thus giving the slice a comparatively small variance of 819.7. The second slice, located 166.1 meters below sea floor, features a lower density sediment matrix disturbed by burrow tubes and the inclusion of a high density mineral. As a result, the Hounsfield Units have a larger variance of 1,197.5, which is a result of sediment matrix values that range from 1220 to 1260 HU, the high-density mineral value of 1920 HU and the burrow tubes that range from 1300 to 1410 HU. Analyzing this variance allows us to observe changes in the sediment matrix and more specifically capture where, and to what extent, the burrow tubes deviate from the sediment matrix. Future research will correlate changes in variance due to bioturbation to other features indicating ocean temperatures and nutrient flux, such as foraminifera counts and oxygen isotope data.

Explicit modeling of marine biogeochemical influence on primary sea spray aerosol composition, and cloud impacts

NASA Astrophysics Data System (ADS)

Burrows, S. M.; Elliott, S.; Liu, X.; Ogunro, O. O.; Easter, R. C.; Rasch, P. J.

2013-12-01

Aerosol concentrations and their cloud nucleation activity in remote ocean regions represent an important uncertainty in current models of global climate. In particular, the impact of marine biological activity on the primary submicron sea spray aerosol is not yet fully understood, and existing knowledge has not yet been fully integrated into climate modeling efforts. We present recent results addressing two aspects of this problem. First, we present an estimate of the concentrations of ice-nucleation active particles derived from ocean biological material, and show that these may dominate IN concentrations in the remote marine boundary layer, particularly over the Southern Ocean. (Burrows et al., ACP, 2013a) Second, we present a novel framework for parameterizing the fractionation of marine organic matter into sea spray. The framework models aerosol organic enrichment as resulting from Langmuir adsorption of surface-active macromolecules at the surface of bursting bubbles. Distributions of macromolecular classes are estimated using output from a global marine biogeochemistry model (Burrows et al., in prep, 2013b; Elliott et al., submitted, 2013). The proposed parameterization independently produces relationships between chlorophyll-a and the sea spray organic mass fraction that are similar to existing empirical parameterizations in highly productive bloom regions, but which differ between seasons and ocean regions as a function of ocean biogeochemical variables. Future work should focus on further evaluating and improving the parameterization based on laboratory and field experiments, as well as on further investigation of the atmospheric implications of the predicted sea spray aerosol chemistry. Field experiments in the Southern Ocean and other remote ocean locations would be especially valuable in evaluating and improving these parameterizations. Burrows, S. M., Hoose, C., Pöschl, U., and Lawrence, M. G.: Ice nuclei in marine air: biogenic particles or dust?, Atmos. Chem. Phys., 13, 245-267, doi:10.5194/acp-13-245-2013, 2013a. Burrows, S. M., Elliott, S., Ogunro, O. and Rasch, P.: A framework for modeling the organic fractionation of the sea spray aerosol, in prep., 2013b. Elliott, S., S. Burrows, C. Deal, X. Liu, M. Long, O. Oluwaseun, L. Russell, and O. Wingenter, Prospects for the simulation of macromolecular surfactant chemistry in the ocean-atmosphere, submitted, 2013b.

A forecast experiment of earthquake activity in Japan under Collaboratory for the Study of Earthquake Predictability (CSEP)

NASA Astrophysics Data System (ADS)

Hirata, N.; Yokoi, S.; Nanjo, K. Z.; Tsuruoka, H.

2012-04-01

One major focus of the current Japanese earthquake prediction research program (2009-2013), which is now integrated with the research program for prediction of volcanic eruptions, is to move toward creating testable earthquake forecast models. For this purpose we started an experiment of forecasting earthquake activity in Japan under the framework of the Collaboratory for the Study of Earthquake Predictability (CSEP) through an international collaboration. We established the CSEP Testing Centre, an infrastructure to encourage researchers to develop testable models for Japan, and to conduct verifiable prospective tests of their model performance. We started the 1st earthquake forecast testing experiment in Japan within the CSEP framework. We use the earthquake catalogue maintained and provided by the Japan Meteorological Agency (JMA). The experiment consists of 12 categories, with 4 testing classes with different time spans (1 day, 3 months, 1 year, and 3 years) and 3 testing regions called "All Japan," "Mainland," and "Kanto." A total of 105 models were submitted, and are currently under the CSEP official suite of tests for evaluating the performance of forecasts. The experiments were completed for 92 rounds for 1-day, 6 rounds for 3-month, and 3 rounds for 1-year classes. For 1-day testing class all models passed all the CSEP's evaluation tests at more than 90% rounds. The results of the 3-month testing class also gave us new knowledge concerning statistical forecasting models. All models showed a good performance for magnitude forecasting. On the other hand, observation is hardly consistent in space distribution with most models when many earthquakes occurred at a spot. Now we prepare the 3-D forecasting experiment with a depth range of 0 to 100 km in Kanto region. The testing center is improving an evaluation system for 1-day class experiment to finish forecasting and testing results within one day. The special issue of 1st part titled Earthquake Forecast Testing Experiment in Japan was published on the Earth, Planets and Space Vol. 63, No.3, 2011 on March, 2011. The 2nd part of this issue, which is now on line, will be published soon. An outline of the experiment and activities of the Japanese Testing Center are published on our WEB site; http://wwweic.eri.u-tokyo.ac.jp/ZISINyosoku/wiki.en/wiki.cgi

Coastal ocean forecasting with an unstructured grid model in the southern Adriatic and northern Ionian seas

NASA Astrophysics Data System (ADS)

Federico, Ivan; Pinardi, Nadia; Coppini, Giovanni; Oddo, Paolo; Lecci, Rita; Mossa, Michele

2017-01-01

SANIFS (Southern Adriatic Northern Ionian coastal Forecasting System) is a coastal-ocean operational system based on the unstructured grid finite-element three-dimensional hydrodynamic SHYFEM model, providing short-term forecasts. The operational chain is based on a downscaling approach starting from the large-scale system for the entire Mediterranean Basin (MFS, Mediterranean Forecasting System), which provides initial and boundary condition fields to the nested system. The model is configured to provide hydrodynamics and active tracer forecasts both in open ocean and coastal waters of southeastern Italy using a variable horizontal resolution from the open sea (3-4 km) to coastal areas (50-500 m). Given that the coastal fields are driven by a combination of both local (also known as coastal) and deep-ocean forcings propagating along the shelf, the performance of SANIFS was verified both in forecast and simulation mode, first (i) on the large and shelf-coastal scales by comparing with a large-scale survey CTD (conductivity-temperature-depth) in the Gulf of Taranto and then (ii) on the coastal-harbour scale (Mar Grande of Taranto) by comparison with CTD, ADCP (acoustic doppler current profiler) and tide gauge data. Sensitivity tests were performed on initialization conditions (mainly focused on spin-up procedures) and on surface boundary conditions by assessing the reliability of two alternative datasets at different horizontal resolution (12.5 and 6.5 km). The SANIFS forecasts at a lead time of 1 day were compared with the MFS forecasts, highlighting that SANIFS is able to retain the large-scale dynamics of MFS. The large-scale dynamics of MFS are correctly propagated to the shelf-coastal scale, improving the forecast accuracy (+17 % for temperature and +6 % for salinity compared to MFS). Moreover, the added value of SANIFS was assessed on the coastal-harbour scale, which is not covered by the coarse resolution of MFS, where the fields forecasted by SANIFS reproduced the observations well (temperature RMSE equal to 0.11 °C). Furthermore, SANIFS simulations were compared with hourly time series of temperature, sea level and velocity measured on the coastal-harbour scale, showing a good agreement. Simulations in the Gulf of Taranto described a circulation mainly characterized by an anticyclonic gyre with the presence of cyclonic vortexes in shelf-coastal areas. A surface water inflow from the open sea to Mar Grande characterizes the coastal-harbour scale.

Supporting inland waterway transport on German waterways by operational forecasting services - water-levels, discharges, river ice

NASA Astrophysics Data System (ADS)

Meißner, Dennis; Klein, Bastian; Ionita, Monica; Hemri, Stephan; Rademacher, Silke

2017-04-01

Inland waterway transport (IWT) is an important commercial sector significantly vulnerable to hydrological impacts. River ice and floods limit the availability of the waterway network and may cause considerable damages to waterway infrastructure. Low flows significantly affect IWT's operation efficiency usually several months a year due to the close correlation of (low) water levels / water depths and (high) transport costs. Therefore "navigation-related" hydrological forecasts focussing on the specific requirements of water-bound transport (relevant forecast locations, target parameters, skill characteristics etc.) play a major role in order to mitigate IWT's vulnerability to hydro-meteorological impacts. In light of continuing transport growth within the European Union, hydrological forecasts for the waterways are essential to stimulate the use of the free capacity IWT still offers more consequently. An overview of the current operational and pre-operational forecasting systems for the German waterways predicting water levels, discharges and river ice thickness on various time-scales will be presented. While short-term (deterministic) forecasts have a long tradition in navigation-related forecasting, (probabilistic) forecasting services offering extended lead-times are not yet well-established and are still subject to current research and development activities (e.g. within the EU-projects EUPORIAS and IMPREX). The focus is on improving technical aspects as well as on exploring adequate ways of disseminating and communicating probabilistic forecast information. For the German stretch of the River Rhine, one of the most frequented inland waterways worldwide, the existing deterministic forecast scheme has been extended by ensemble forecasts combined with statistical post-processing modules applying EMOS (Ensemble Model Output Statistics) and ECC (Ensemble Copula Coupling) in order to generate water level predictions up to 10 days and to estimate its predictive uncertainty properly. Additionally for the key locations at the international waterways Rhine, Elbe and Danube three competing forecast approaches are currently tested in a pre-operational set-up in order to generate monthly to seasonal (up to 3 months) forecasts: (1) the well-known Ensemble Streamflow Prediction approach (ensemble based on historical meteorology), (2) coupling hydrological models with post-processed outputs from ECMWF's general circulation model (System 4), and (3) a purely statistical approach based on the stable relationship (teleconnection) of global or regional oceanic, climate and hydrological data with river flows. The current results, still pre-operational, reveal the existence of a valuable predictability of water levels and streamflow also at monthly up to seasonal time-scales along the larger rivers used as waterways in Germany. Last but not least insight into the technical set-up of the aforementioned forecasting systems operated at the Federal Institute of Hydrology, which are based on a Delft-FEWS application, will be given focussing on the step-wise extension of the former system by integrating new components in order to meet the growing needs of the customers and to improve and extend the forecast portfolio for waterway users.

Comparison of GEOS-5 AGCM planetary boundary layer depths computed with various definitions

NASA Astrophysics Data System (ADS)

McGrath-Spangler, E. L.; Molod, A.

2014-07-01

Accurate models of planetary boundary layer (PBL) processes are important for forecasting weather and climate. The present study compares seven methods of calculating PBL depth in the GEOS-5 atmospheric general circulation model (AGCM) over land. These methods depend on the eddy diffusion coefficients, bulk and local Richardson numbers, and the turbulent kinetic energy. The computed PBL depths are aggregated to the Köppen-Geiger climate classes, and some limited comparisons are made using radiosonde profiles. Most methods produce similar midday PBL depths, although in the warm, moist climate classes the bulk Richardson number method gives midday results that are lower than those given by the eddy diffusion coefficient methods. Additional analysis revealed that methods sensitive to turbulence driven by radiative cooling produce greater PBL depths, this effect being most significant during the evening transition. Nocturnal PBLs based on Richardson number methods are generally shallower than eddy diffusion coefficient based estimates. The bulk Richardson number estimate is recommended as the PBL height to inform the choice of the turbulent length scale, based on the similarity to other methods during the day, and the improved nighttime behavior.

Comparison of GEOS-5 AGCM Planetary Boundary Layer Depths Computed with Various Definitions

NASA Technical Reports Server (NTRS)

Mcgrath-Spangler, E. L.; Molod, A.

2014-01-01

Accurate models of planetary boundary layer (PBL) processes are important for forecasting weather and climate. The present study compares seven methods of calculating PBL depth in the GEOS-5 atmospheric general circulation model (AGCM) over land. These methods depend on the eddy diffusion coefficients, bulk and local Richardson numbers, and the turbulent kinetic energy. The computed PBL depths are aggregated to the Koppen climate classes, and some limited comparisons are made using radiosonde profiles. Most methods produce similar midday PBL depths, although in the warm, moist climate classes, the bulk Richardson number method gives midday results that are lower than those given by the eddy diffusion coefficient methods. Additional analysis revealed that methods sensitive to turbulence driven by radiative cooling produce greater PBL depths, this effect being most significant during the evening transition. Nocturnal PBLs based on Richardson number are generally shallower than eddy diffusion coefficient based estimates. The bulk Richardson number estimate is recommended as the PBL height to inform the choice of the turbulent length scale, based on the similarity to other methods during the day, and the improved nighttime behavior.

Comparison of GEOS-5 AGCM planetary boundary layer depths computed with various definitions

NASA Astrophysics Data System (ADS)

McGrath-Spangler, E. L.; Molod, A.

2014-03-01

Accurate models of planetary boundary layer (PBL) processes are important for forecasting weather and climate. The present study compares seven methods of calculating PBL depth in the GEOS-5 atmospheric general circulation model (AGCM) over land. These methods depend on the eddy diffusion coefficients, bulk and local Richardson numbers, and the turbulent kinetic energy. The computed PBL depths are aggregated to the Köppen climate classes, and some limited comparisons are made using radiosonde profiles. Most methods produce similar midday PBL depths, although in the warm, moist climate classes, the bulk Richardson number method gives midday results that are lower than those given by the eddy diffusion coefficient methods. Additional analysis revealed that methods sensitive to turbulence driven by radiative cooling produce greater PBL depths, this effect being most significant during the evening transition. Nocturnal PBLs based on Richardson number are generally shallower than eddy diffusion coefficient based estimates. The bulk Richardson number estimate is recommended as the PBL height to inform the choice of the turbulent length scale, based on the similarity to other methods during the day, and the improved nighttime behavior.

The climatic effect of explosive volcanic activity: Analysis of the historical data

NASA Technical Reports Server (NTRS)

Bryson, R. A.; Goodman, B. M.

1982-01-01

By using the most complete available records of direct beam radiation and volcanic eruptions, an historical analysis of the role of the latter in modulating the former was made. A very simple fallout and dispersion model was applied to the historical chronology of explosive eruptions. The resulting time series explains about 77 percent of the radiation variance, as well as suggests that tropical and subpolar eruptions are more important than mid-latitude eruptions in their impact on the stratospheric aerosol optical depth. The simpler climatic models indicate that past hemispheric temperature can be stimulated very well with volcanic and CO2 inputs and suggest that climate forecasting will also require volcano forecasting. There is some evidence that this is possible some years in advance.

Identified EM Earthquake Precursors

NASA Astrophysics Data System (ADS)

Jones, Kenneth, II; Saxton, Patrick

2014-05-01

Many attempts have been made to determine a sound forecasting method regarding earthquakes and warn the public in turn. Presently, the animal kingdom leads the precursor list alluding to a transmission related source. By applying the animal-based model to an electromagnetic (EM) wave model, various hypotheses were formed, but the most interesting one required the use of a magnetometer with a differing design and geometry. To date, numerous, high-end magnetometers have been in use in close proximity to fault zones for potential earthquake forecasting; however, something is still amiss. The problem still resides with what exactly is forecastable and the investigating direction of EM. After a number of custom rock experiments, two hypotheses were formed which could answer the EM wave model. The first hypothesis concerned a sufficient and continuous electron movement either by surface or penetrative flow, and the second regarded a novel approach to radio transmission. Electron flow along fracture surfaces was determined to be inadequate in creating strong EM fields, because rock has a very high electrical resistance making it a high quality insulator. Penetrative flow could not be corroborated as well, because it was discovered that rock was absorbing and confining electrons to a very thin skin depth. Radio wave transmission and detection worked with every single test administered. This hypothesis was reviewed for propagating, long-wave generation with sufficient amplitude, and the capability of penetrating solid rock. Additionally, fracture spaces, either air or ion-filled, can facilitate this concept from great depths and allow for surficial detection. A few propagating precursor signals have been detected in the field occurring with associated phases using custom-built loop antennae. Field testing was conducted in Southern California from 2006-2011, and outside the NE Texas town of Timpson in February, 2013. The antennae have mobility and observations were noted for recurrence, duration, and frequency response. At the Southern California field sites, one loop antenna was positioned for omni-directional reception and also detected a strong First Schumann Resonance; however, additional Schumann Resonances were absent. At the Timpson, TX field sites, loop antennae were positioned for directional reception, due to earthquake-induced, hydraulic fracturing activity currently conducted by the oil and gas industry. Two strong signals, one moderately strong signal, and approximately 6-8 weaker signals were detected in the immediate vicinity. The three stronger signals were mapped by a biangulation technique, followed by a triangulation technique for confirmation. This was the first antenna mapping technique ever performed for determining possible earthquake epicenters. Six and a half months later, Timpson experienced two M4 (M4.1 and M4.3) earthquakes on September 2, 2013 followed by a M2.4 earthquake three days later, all occurring at a depth of five kilometers. The Timpson earthquake activity now has a cyclical rate and a forecast was given to the proper authorities. As a result, the Southern California and Timpson, TX field results led to an improved design and construction of a third prototype antenna. With a loop antenna array, a viable communication system, and continuous monitoring, a full fracture cycle can be established and observed in real-time. In addition, field data could be reviewed quickly for assessment and lead to a much more improved earthquake forecasting capability. The EM precursors determined by this method appear to surpass all prior precursor claims, and the general public will finally receive long overdue forecasting.

Deep-sea Lebensspuren of the Australian continental margins

NASA Astrophysics Data System (ADS)

Przeslawski, Rachel; Dundas, Kate; Radke, Lynda; Anderson, Tara J.

Much of the deep sea comprises soft-sediment habitats dominated by comparatively low abundances of species-rich macrofauna and meiofauna. Although often not observed, these animals bioturbate the sediment during feeding and burrowing, leaving signs of their activities called Lebensspuren ('life traces'). In this study, we use still images to quantify Lebensspuren from the eastern (1921 images, 13 stations, 1300-2200 m depth) and western (1008 images, 11 stations, 1500-4400 m depth) Australian margins using a univariate measure of trace richness and a multivariate measure of Lebensspuren assemblages. A total of 46 Lebensspuren types were identified, including those matching named trace fossils and modern Lebensspuren found elsewhere in the world. Most traces could be associated with waste, crawling, dwellings, organism tests, feeding, or resting, but the origin of 15% of trace types remains unknown. Assemblages were significantly different between the two regions and depth profiles, with five Lebensspuren types accounting for over 95% of the differentiation (ovoid pinnate trace, crater row, spider trace, matchstick trace, mesh trace). Lebensspuren richness showed no strong relationships with depth, total organic carbon, or mud, although there was a positive correlation to chlorin index (i.e., organic freshness) in the eastern margin, with richness increasing with organic freshness. Lebensspuren richness was not related to epifauna either, indicating that epifauna may not be the primary source of Lebensspuren. Despite the abundance and distinctiveness of several traces both in the current and previous studies (e.g., ovoid pinnate, mesh, spider), their origin and distribution remains a mystery. We discuss this and several other considerations in the identification and quantification of Lebensspuren. This study represents the first comprehensive catalogue of deep-sea Lebensspuren in Australian waters and highlights the potential of Lebensspuren as valuable and often untapped deep-sea datasets that can be used for biogeographical, evolutionary, behavioural, and ecological studies.

Estimating amplitudes of fifth-order sea level fluctuations from peritidal through basinal carbonate deposits, Lower Mississippian, Wyoming-Montana

DOE Office of Scientific and Technical Information (OSTI.GOV)

Elrick, M.; Read, J.F.

1990-05-01

Three types of 1-10-m upward-shallowing cycles are observed in the Lower Mississippian Lodgepole and lower Madison formations of Wyoming and Montana. Typical peritidal cycles have pellet grainstone bases overlain by algal laminites, which are rarely capped by paleosol/regolith horizons. Shallow ramp cycles have burrowed pellet-skeletal wackestone bases overlain by cross-bedded ooid/crinoid grainstone caps. Deep ramp cycles are characterized by sub-wave base limestone/argillite, storm-deposited limestone, overlain by hummocky stratified grainstone caps. Average cycle periods range from 17-155 k.y. This, rhythmically bedded limestone/argillite deposits of basinal facies do not contain shallowing-upward cycles, but do contain 2-4 k.y. limestone/argillite rhythms. These sub-wave basemore » deposit are associated with Waulsortian-type mud mounds which have >50 m synoptic relief. This relief provides minimum water depth estimates for the deposits, and implies storm-wave base was less than 50 m. Two-dimensional computer modeling of cyclic platform through noncyclic basinal deposits allows for bracketing of fifth-order sea level fluctuation amplitudes, thought responsible for cycle formation. Computer models using fifth-order amplitudes less than 20 m do not produce cycles on the deep ramp (assuming a 25-30 m storm-wave base). Amplitudes >30 m produce water depths on the inner ramp that are too deep, and disconformities extend too far into the basin. The absence of meter-scale cycles in the basin suggests water depths were too great to record the effects of sea level oscillations occurring on the platform, or climatic fluctuation, associated with glacio-eustatic sea level oscillations, were not sufficient to affect hemipelagic depositional patterns in the tropical basin environment.« less

An operational global ocean forecast system and its applications

NASA Astrophysics Data System (ADS)

Mehra, A.; Tolman, H. L.; Rivin, I.; Rajan, B.; Spindler, T.; Garraffo, Z. D.; Kim, H.

2012-12-01

A global Real-Time Ocean Forecast System (RTOFS) was implemented in operations at NCEP/NWS/NOAA on 10/25/2011. This system is based on an eddy resolving 1/12 degree global HYCOM (HYbrid Coordinates Ocean Model) and is part of a larger national backbone capability of ocean modeling at NWS in strong partnership with US Navy. The forecast system is run once a day and produces a 6 day long forecast using the daily initialization fields produced at NAVOCEANO using NCODA (Navy Coupled Ocean Data Assimilation), a 3D multi-variate data assimilation methodology. As configured within RTOFS, HYCOM has a horizontal equatorial resolution of 0.08 degrees or ~9 km. The HYCOM grid is on a Mercator projection from 78.64 S to 47 N and north of this it employs an Arctic dipole patch where the poles are shifted over land to avoid a singularity at the North Pole. This gives a mid-latitude (polar) horizontal resolution of approximately 7 km (3.5 km). The coastline is fixed at 10 m isobath with open Bering Straits. This version employs 32 hybrid vertical coordinate surfaces with potential density referenced to 2000 m. Vertical coordinates can be isopycnals, often best for resolving deep water masses, levels of equal pressure (fixed depths), best for the well mixed unstratified upper ocean and sigma-levels (terrain-following), often the best choice in shallow water. The dynamic ocean model is coupled to a thermodynamic energy loan ice model and uses a non-slab mixed layer formulation. The forecast system is forced with 3-hourly momentum, radiation and precipitation fluxes from the operational Global Forecast System (GFS) fields. Results include global sea surface height and three dimensional fields of temperature, salinity, density and velocity fields used for validation and evaluation against available observations. Several downstream applications of this forecast system will also be discussed which include search and rescue operations at US Coast Guard, navigation safety information provided by OPC using real time ocean model guidance from Global RTOFS surface ocean currents, operational guidance on radionuclide dispersion near Fukushima using 3D tracers, boundary conditions for various operational coastal ocean forecast systems (COFS) run by NOS etc.

On-line applications of numerical models in the Black Sea GIS

NASA Astrophysics Data System (ADS)

Zhuk, E.; Khaliulin, A.; Zodiatis, G.; Nikolaidis, A.; Nikolaidis, M.; Stylianou, Stavros

2017-09-01

The Black Sea Geographical Information System (GIS) is developed based on cutting edge information technologies, and provides automated data processing and visualization on-line. Mapserver is used as a mapping service; the data are stored in MySQL DBMS; PHP and Python modules are utilized for data access, processing, and exchange. New numerical models can be incorporated in the GIS environment as individual software modules, compiled for a server-based operational system, providing interaction with the GIS. A common interface allows setting the input parameters; then the model performs the calculation of the output data in specifically predefined files and format. The calculation results are then passed to the GIS for visualization. Initially, a test scenario of integration of a numerical model into the GIS was performed, using software, developed to describe a two-dimensional tsunami propagation in variable basin depth, based on a linear long surface wave model which is legitimate for more than 5 m depth. Furthermore, the well established oil spill and trajectory 3-D model MEDSLIK (http://www.oceanography.ucy.ac.cy/medslik/) was integrated into the GIS with more advanced GIS functionality and capabilities. MEDSLIK is able to forecast and hind cast the trajectories of oil pollution and floating objects, by using meteo-ocean data and the state of oil spill. The MEDSLIK module interface allows a user to enter all the necessary oil spill parameters, i.e. date and time, rate of spill or spill volume, forecasting time, coordinates, oil spill type, currents, wind, and waves, as well as the specification of the output parameters. The entered data are passed on to MEDSLIK; then the oil pollution characteristics are calculated for pre-defined time steps. The results of the forecast or hind cast are then visualized upon a map.

Optimizing measurements of cluster velocities and temperatures for CCAT-prime and future surveys

NASA Astrophysics Data System (ADS)

Mittal, Avirukt; de Bernardis, Francesco; Niemack, Michael D.

2018-02-01

Galaxy cluster velocity correlations and mass distributions are sensitive probes of cosmology and the growth of structure. Upcoming microwave surveys will enable extraction of velocities and temperatures from many individual clusters for the first time. We forecast constraints on peculiar velocities, electron temperatures, and optical depths of galaxy clusters obtainable with upcoming multi-frequency measurements of the kinematic, thermal, and relativistic Sunyaev-Zeldovich effects. The forecasted constraints are compared for different measurement configurations with frequency bands between 90 GHz and 1 THz, and for different survey strategies for the 6-meter CCAT-prime telescope. We study methods for improving cluster constraints by removing emission from dusty star forming galaxies, and by using X-ray temperature priors from eROSITA. Cluster constraints are forecast for several model cluster masses. A sensitivity optimization for seven frequency bands is presented for a CCAT-prime first light instrument and a next generation instrument that takes advantage of the large optical throughput of CCAT-prime. We find that CCAT-prime observations are expected to enable measurement and separation of the SZ effects to characterize the velocity, temperature, and optical depth of individual massive clusters (~1015 Msolar). Submillimeter measurements are shown to play an important role in separating these components from dusty galaxy contamination. Using a modular instrument configuration with similar optical throughput for each detector array, we develop a rule of thumb for the number of detector arrays desired at each frequency to optimize extraction of these signals. Our results are relevant for a future "Stage IV" cosmic microwave background survey, which could enable galaxy cluster measurements over a larger range of masses and redshifts than will be accessible by other experiments.

A three-dimensional multivariate representation of atmospheric variability

NASA Astrophysics Data System (ADS)

Žagar, Nedjeljka; Jelić, Damjan; Blaauw, Marten; Jesenko, Blaž

2016-04-01

A recently developed MODES software has been applied to the ECMWF analyses and forecasts and to several reanalysis datasets to describe the global variability of the balanced and inertio-gravity (IG) circulation across many scales by considering both mass and wind field and the whole model depth. In particular, the IG spectrum, which has only recently become observable in global datasets, can be studied simultaneously in the mass field and wind field and considering the whole model depth. MODES is open-access software that performs the normal-mode function decomposition of the 3D global datasets. Its application to the ERA Interim dataset reveals several aspects of the large-scale circulation after it has been partitioned into the linearly balanced and IG components. The global energy distribution is dominated by the balanced energy while the IG modes contribute around 8% of the total wave energy. However, on subsynoptic scales IG energy dominates and it is associated with the main features of tropical variability on all scales. The presented energy distribution and features of the zonally-averaged and equatorial circulation provide a reference for the intercomparison of several reanalysis datasets and for the validation of climate models. Features of the global IG circulation are compared in ERA Interim, MERRA and JRA reanalysis datasets and in several CMIP5 models. Since October 2014 the operational medium-range forecasts of the European Centre for Medium-Range Weather Forecasts (ECMWF) have been analyzed by MODES daily and an online archive of all the outputs is available at http://meteo.fmf.uni-lj.si/MODES. New outputs are made available daily based on the 00 UTC run and subsequent 12-hour forecasts up to 240-hour forecast. In addition to the energy spectra and horizontal circulation on selected levels for the balanced and IG components, the equatorial Kelvin waves are presented in time and space as the most energetic tropical IG modes propagating vertically and along the equator from its main generation regions in the upper troposphere over the Indian and Pacific region. The validation of the 10-day ECMWF forecasts with analyses in the modal space suggests a lack of variability in the tropics in the medium range. Reference: Žagar, N. et al., 2015: Normal-mode function representation of global 3-D data sets: open-access software for the atmospheric research community. Geosci. Model Dev., 8, 1169-1195, doi:10.5194/gmd-8-1169-2015 Žagar, N., R. Buizza, and J. Tribbia, 2015: A three-dimensional multivariate modal analysis of atmospheric predictability with application to the ECMWF ensemble. J. Atmos. Sci., 72, 4423-4444 The MODES software is available from http://meteo.fmf.uni-lj.si/MODES.

Fluid injection and induced seismicity

NASA Astrophysics Data System (ADS)

Kendall, Michael; Verdon, James

2016-04-01

The link between fluid injection, or extraction, and induced seismicity has been observed in reservoirs for many decades. In fact spatial mapping of low magnitude events is routinely used to estimate a stimulated reservoir volume. However, the link between subsurface fluid injection and larger felt seismicity is less clear and has attracted recent interest with a dramatic increase in earthquakes associated with the disposal of oilfield waste fluids. In a few cases, hydraulic fracturing has also been linked to induced seismicity. Much can be learned from past case-studies of induced seismicity so that we can better understand the risks posed. Here we examine 12 case examples and consider in particular controls on maximum event size, lateral event distributions, and event depths. Our results suggest that injection volume is a better control on maximum magnitude than past, natural seismicity in a region. This might, however, simply reflect the lack of baseline monitoring and/or long-term seismic records in certain regions. To address this in the UK, the British Geological Survey is leading the deployment of monitoring arrays in prospective shale gas areas in Lancashire and Yorkshire. In most cases, seismicity is generally located in close vicinity to the injection site. However, in some cases, the nearest events are up to 5km from the injection point. This gives an indication of the minimum radius of influence of such fluid injection projects. The most distant events are never more than 20km from the injection point, perhaps implying a maximum radius of influence. Some events are located in the target reservoir, but most occur below the injection depth. In fact, most events lie in the crystalline basement underlying the sedimentary rocks. This suggests that induced seismicity may not pose a leakage risk for fluid migration back to the surface, as it does not impact caprock integrity. A useful application for microseismic data is to try and forecast induced seismicity during injection, with the aim of mitigating large induced events before they happen. Microseismic event population statistics can be used to make forecasts about the future maximum event magnitude as the injection program continues. By making such forecasts, mitigating actions may be possible if forecast maximum magnitudes exceed a predefined limit.

Understanding the Impact of Ground Water Treatment and Evapotranspiration Parameterizations in the NCEP Climate Forecast System (CFS) on Warm Season Predictions

NASA Astrophysics Data System (ADS)

Ek, M. B.; Yang, R.

2016-12-01

Skillful short-term weather forecasts, which rely heavily on quality atmospheric initial conditions, have a fundamental limit of about two weeks owing to the chaotic nature of the atmosphere. Useful forecasts at sub-seasonal to seasonal time scales, on the other hand, require well-simulated large-scale atmospheric response to slowly varying lower boundary forcings from both the ocean and land surface. The critical importance of ocean has been recognized, where the ocean indices have been used in a variety of climate applications. In contrast, the impact of land surface anomalies, especially soil moisture and associated evaporation, has been proven notably difficult to demonstrate. The Noah Land Surface Model (LSM) is the land component of NCEP CFS version 2 (CFSv2) used for seasonal predictions. The Noah LSM originates from the Oregon State University (OSU) LSM. The evaporation control in the Noah LSM is based on the Penman-Monteith equation, which takes into account the solar radiation, relative humidity, air temperature, and soil moisture effects. The Noah LSM is configured with four soil layers with a fixed depth of 2 meters and free drainage at the bottom soil layer. This treatment assumes that the soil water table depth is well within the specified range, and also potentially misrepresents the soil moisture memory effects at seasonal time scales. To overcome the limitation, an unconfined aquifer is attached to the bottom of the soil to allow the water table to move freely up and down. In addition, in conjunction with the water table, an alternative Ball-Berry photosynthesis-based evaporation parameterization is examined to evaluate the impact from using a different evaporation control methodology. Focusing on the 2011 and 2012 intense summer droughts in the central US, seasonal ensemble forecast experiments with early May initial conditions are carried out for the two years using an enhanced version of CFSv2, where the atmospheric component of the CFSv2 is coupled to the Noah Multiple-Parameterization (Noah-MP) land model. The Noah-MP has different options for ground water and evaporation control parameterizations. The differences will be presented and results will be discussed.

Large earthquake rates from geologic, geodetic, and seismological perspectives

NASA Astrophysics Data System (ADS)

Jackson, D. D.

2017-12-01

Earthquake rate and recurrence information comes primarily from geology, geodesy, and seismology. Geology gives the longest temporal perspective, but it reveals only surface deformation, relatable to earthquakes only with many assumptions. Geodesy is also limited to surface observations, but it detects evidence of the processes leading to earthquakes, again subject to important assumptions. Seismology reveals actual earthquakes, but its history is too short to capture important properties of very large ones. Unfortunately, the ranges of these observation types barely overlap, so that integrating them into a consistent picture adequate to infer future prospects requires a great deal of trust. Perhaps the most important boundary is the temporal one at the beginning of the instrumental seismic era, about a century ago. We have virtually no seismological or geodetic information on large earthquakes before then, and little geological information after. Virtually all-modern forecasts of large earthquakes assume some form of equivalence between tectonic- and seismic moment rates as functions of location, time, and magnitude threshold. That assumption links geology, geodesy, and seismology, but it invokes a host of other assumptions and incurs very significant uncertainties. Questions include temporal behavior of seismic and tectonic moment rates; shape of the earthquake magnitude distribution; upper magnitude limit; scaling between rupture length, width, and displacement; depth dependence of stress coupling; value of crustal rigidity; and relation between faults at depth and their surface fault traces, to name just a few. In this report I'll estimate the quantitative implications for estimating large earthquake rate. Global studies like the GEAR1 project suggest that surface deformation from geology and geodesy best show the geography of very large, rare earthquakes in the long term, while seismological observations of small earthquakes best forecasts moderate earthquakes up to about magnitude 7. Regional forecasts for a few decades, like those in UCERF3, could be improved by calibrating tectonic moment rate to past seismicity rates. Century-long forecasts must be speculative. Estimates of maximum magnitude and rate of giant earthquakes over geologic time scales require more than science.

DEA-I: A Globally Configurable Open Source Software Package in Support of Air Quality Forecasts

NASA Astrophysics Data System (ADS)

Davies, J.; Strabala, K.; Pierce, R.; Huang, H.; Schiffer, E.

2012-12-01

During September 2003, a team of NASA, NOAA, and EPA researchers demonstrated a prototype for using Moderate Resolution Imaging Spectroradiometer (MODIS) aerosol optical depth retrievals in daily air quality forecasts; this became known as IDEA (Infusing satellite Data into Environmental Applications). IDEA was part of the NASA Applied Sciences Program strategy to demonstrate practical uses of NASA-sponsored observations from space and predictions. Following its successful demonstration an export version of IDEA, known as IDEA International (IDEA-I), has now been released. IDEA-I supports the Global Earth Observation Systems of Systems (GEOSS) Group on Earth Observations (GEO) Health Societal Benefit Area (SBA) and is being developed within the framework of the GEO Earth Observations in Decision Support Call for Proposals. The vehicle for IDEA-I release is the International MODIS and AIRS (Atmospheric Infrared Sounder) Processing Package (IMAPP), developed at the Space Science and Engineering Center, University of Wisconsin-Madison (SSEC/UW-Madison). IMAPP is a NASA-funded and freely-distributed software package which allows any ground station capable of receiving direct broadcast from Terra or Aqua to produce calibrated and geolocated radiances, and a suite of environmental products, of which the IDEA-I 48-hour forward trajectory prediction of high aerosol events is now a part. IDEA-I provides a tool for linking ground-based and satellite capabilities to support international air quality forecasting activities and is to be demonstrated internationally through user training and impact evaluation via a series of IMAPP workshops. This presentation describes the IMAPP implementation of IDEA-I in terms of its simple installation and configuration, and through examples of its operation in several regions known for periodic high aerosol events.; Screen capture of the University of Wisconsin implementation of the real-time direct broadcast IDEA-I Air Quality monitoring website. This example uses Terra MODIS Aerosol Optical Depth retrievals to identify regions of high aerosol concentrations. A trajectory model is then run that provide a forecast of the horizontal and vertical movement of the aerosols over the next 48 hours.

Microhabitat associations of a semi-terrestrial fish, Kryptolebias marmoratus (Poey 1880) in a mosquito-ditched mangrove forest, west-central Florida

USGS Publications Warehouse

Richards, Travis M.; Krebs, Justin M.; McIvor, Carole C.

2011-01-01

Mangrove rivulus (Kryptolebias marmoratus) is one of the few species of fish that is semi-terrestrial and able to use exposed intertidal and potentially supratidal habitats for prolonged periods of time. Based on previous work demonstrating frequent use of subterranean crab burrows as well as damp leaf litter and logs, we examined the microhabitat associations of rivulus in a mosquito-ditched mangrove forest on the Gulf coast of Florida near the northern limit of its distribution. We captured 161 rivulus on 20 dates between late April and mid-December 2007 using trench traps. Fish ranged in size from 7 to 35 mm SL. Peak abundance in mid-summer coincided with recruitment of a new year-class. The three study sites occurred within 0.5 km of one another, and experienced similar water temperatures and salinities. Nevertheless, they differed in their degree of tidal inundation, standing stock of leaf litter, and density of entrances to fiddler crab burrows. We consistently observed the highest mean catches of rivulus away from permanent subtidal waters of mosquito ditches, at intermediate relative elevations, and where leaf litter was locally abundant. Density of entrances to crab burrows was apparently unrelated to rivulus distribution or abundance in these forests.

Habitat selection by juvenile Mojave Desert tortoises

USGS Publications Warehouse

Todd, Brian D; Halstead, Brian J.; Chiquoine, Lindsay P.; Peaden, J. Mark; Buhlmann, Kurt A.; Tuberville, Tracey D.; Nafus, Melia G.

2016-01-01

Growing pressure to develop public lands for renewable energy production places several protected species at increased risk of habitat loss. One example is the Mojave desert tortoise (Gopherus agassizii), a species often at the center of conflicts over public land development. For this species and others on public lands, a better understanding of their habitat needs can help minimize negative impacts and facilitate protection or restoration of habitat. We used radio-telemetry to track 46 neonate and juvenile tortoises in the Eastern Mojave Desert, California, USA, to quantify habitat at tortoise locations and paired random points to assess habitat selection. Tortoise locations near burrows were more likely to be under canopy cover and had greater coverage of perennial plants (especially creosote [Larrea tridentata]), more coverage by washes, a greater number of small-mammal burrows, and fewer white bursage (Ambrosia dumosa) than random points. Active tortoise locations away from burrows were closer to washes and perennial plants than were random points. Our results can help planners locate juvenile tortoises and avoid impacts to habitat critical for this life stage. Additionally, our results provide targets for habitat protection and restoration and suggest that diverse and abundant small-mammal populations and the availability of creosote bush are vital for juvenile desert tortoises in the Eastern Mojave Desert.

Plant protein and secondary metabolites influence diet selection in a mammalian specialist herbivore

PubMed Central

Ulappa, Amy C.; Kelsey, Rick G.; Frye, Graham G.; Rachlow, Janet L.; Shipley, Lisa A.; Bond, Laura; Pu, Xinzhu; Forbey, Jennifer Sorensen

2015-01-01

For herbivores, nutrient intake is limited by the relatively low nutritional quality of plants and high concentrations of potentially toxic defensive compounds (plant secondary metabolites, PSMs) produced by many plants. In response to phytochemical challenges, some herbivores selectively forage on plants with higher nutrient and lower PSM concentrations relative to other plants. Pygmy rabbits (Brachylagus idahoensis) are dietary specialists that feed on sagebrush (Artemisia spp.) and forage on specific plants more than others within a foraging patch. We predicted that the plants with evidence of heavy foraging (browsed plants) would be of higher dietary quality than plants that were not browsed (unbrowsed). We used model selection to determine which phytochemical variables best explained the difference between browsed and unbrowsed plants. Higher crude protein increased the odds that plants would be browsed by pygmy rabbits and the opposite was the case for certain PSMs. Additionally, because pygmy rabbits can occupy foraging patches (burrows) for consecutive years, their browsing may influence the nutritional and PSM constituents of plants at the burrows. In a post hoc analysis, we did not find a significant relationship between phytochemical concentrations, browse status and burrow occupancy length. We concluded that pygmy rabbits use nutritional and chemical cues while making foraging decisions. PMID:26366011

Population density of the western burrowing owl (Athene cunicularia hypugaea) in Mexican prairie dog (Cynomys mexicanus) colonies in northeastern Mexico.

PubMed

Ruiz Ayma, Gabriel; Olalla Kerstupp, Alina; Macías Duarte, Alberto; Guzmán Velasco, Antonio; González Rojas, José I

2016-08-26

The western burrowing owl (Athene cunicularia hypugaea) occurs throughout western North America in various habitats such as desert, short-grass prairie and shrub-steppe, among others, where the main threat for this species is habitat loss. Range-wide declines have prompted a need for reliable estimates of its populations in Mexico, where the size of resident and migratory populations remain unknown. Our objective was to estimate the abundance and density of breeding western burrowing owl populations in Mexican prairie dog (Cynomys mexicanus) colonies in two sites located within the Chihuahuan Desert ecoregion in the states of Nuevo Leon and San Luis Potosi, Mexico. Line transect surveys were conducted from February to April of 2010 and 2011. Fifty 60 ha transects were analyzed using distance sampling to estimate owl and Mexican prairie dog populations. We estimated a population of 2026 owls (95 % CI 1756-2336) in 2010 and 2015 owls (95 % CI 1573-2317) in 2011 across 50 Mexican prairie dog colonies (20,529 ha). The results represent the first systematic attempt to provide reliable evidence related to the size of the adult owl populations, within the largest and best preserved Mexican prairie dog colonies in Mexico.

Ichnological evidence of jökulhlaup deposit recolonization from the Touchet Beds, Mabton, WA, USA

NASA Astrophysics Data System (ADS)

MacEachern, James A.; Roberts, Michael C.

2013-01-01

The late Wisconsinan Touchet Beds section at Mabton, Washington reveals at least seven stacked jökulhlaup deposits, five showing evidence of post-flood recolonization by vertebrates. Tracemakers are attributed to voles or pocket mice (1-3 cm diameter burrows) and pocket gophers or ground squirrels (3-6 cm diameter burrows). The Mount St. Helens S tephra deposited between flood beds contains the invertebrate-generated burrows Naktodemasis and Macanopsis. Estimates of times between floods are based on natal dispersal distances of the likely vertebrate tracemakers (30-50 m median distances; 127-525 m maximum distances) from upland areas containing surviving populations to the Mabton area, a distance of about 7.9 km. Tetrapods would have required at least two to three decades to recolonize these flood beds, based on maximum dispersal distances. Invertebrate recolonization was limited by secondary succession and estimated at only a few years to a decade. These ichnological data support multiple floods from failure of the ice dam at glacial Lake Missoula, separated by hiatal surfaces on the order of decades in duration. Ichnological recolonization times are consistent with published estimates of refill times for glacial Lake Missoula, and complement the other field evidence that points to repeated, autogenically induced flood discharge.

Effects of military training activities on shrub-steppe raptors in southwestern Idaho, USA

USGS Publications Warehouse

Lehman, Robert N.; Steenhof, Karen; Kochert, Michael N.; Carpenter, L.B.

1999-01-01

Between 1991 and 1994, we assessed relative abundance, nesting success, and distribution of ferruginous hawks (Buteo regalis), northern harriers (Circus cyaneus), burrowing owls (Athene cunicularia), and short-eared owls (Asio flammeus) inside and outside a military training site in the Snake River Birds of Prey National Conservation Area, southwestern Idaho. The Orchard Training Area is used primarily for armored vehicle training and artillery firing by the Idaho Army National Guard. Relative abundance of nesting pairs inside and outside the training site was not significantly different from 1991 to 1993 but was significantly higher on the training site in 1994 (Pa??a??a??0.03). Nesting success varied among years but was not significantly different inside and outside the training site (Pa??>a??0.26). In 1994, short-eared owl and burrowing owl nests were significantly closer to firing ranges used early in the spring before owls laid eggs than were random points (Pa??

Comparative analysis of operational forecasts versus actual weather conditions in airline flight planning: Summary report

NASA Technical Reports Server (NTRS)

Keitz, J. F.

1982-01-01

The impact of more timely and accurate weather data on airline flight planning with the emphasis on fuel savings is studied. This summary report discusses the results of each of the four major tasks of the study. Task 1 compared airline flight plans based on operational forecasts to plans based on the verifying analyses and found that average fuel savings of 1.2 to 2.5 percent are possible with improved forecasts. Task 2 consisted of similar comparisons but used a model developed for the FAA by SRI International that simulated the impact of ATc diversions on the flight plans. While parts of Task 2 confirm the Task I findings, inconsistency with other data and the known impact of ATC suggests that other Task 2 findings are the result of errors in the model. Task 3 compares segment weather data from operational flight plans with the weather actually observed by the aircraft and finds the average error could result in fuel burn penalties (or savings) of up to 3.6 percent for the average 8747 flight. In Task 4 an in-depth analysis of the weather forecast for the 33 days included in the study finds that significant errors exist on 15 days. Wind speeds in the area of maximum winds are underestimated by 20 to 50 kts., a finding confirmed in the other three tasks.

Modeling sediment accumulation in North American playa wetlands in response to climate change, 1940-2100

USGS Publications Warehouse

Burris, Lucy; Skagen, Susan K.

2013-01-01

Playa wetlands on the west-central Great Plains of North America are vulnerable to sediment infilling from upland agriculture, putting at risk several important ecosystem services as well as essential habitats and food resources of diverse wetland-dependent biota. Climate predictions for this semi-arid area indicate reduced precipitation which may alter rates of erosion, runoff, and sedimentation of playas. We forecasted erosion rates, sediment depths, and resultant playa wetland depths across the west-central Great Plains and examined the relative roles of land use context and projected changes in precipitation in the sedimentation process. We estimated erosion with the Revised Universal Soil Loss Equation (RUSLE) using historic values and downscaled precipitation predictions from three general circulation models and three emissions scenarios. We calibrated RUSLE results using field sediment measurements. RUSLE is appealing for regional scale modeling because it uses climate forecasts with monthly resolution and other widely available values including soil texture, slope and land use. Sediment accumulation rates will continue near historic levels through 2070 and will be sufficient to cause most playas (if not already filled) to fill with sediment within the next 100 years in the absence of mitigation. Land use surrounding the playa, whether grassland or tilled cropland, is more influential in sediment accumulation than climate-driven precipitation change.

Forecasting of cyanobacterial density in Torrão reservoir using artificial neural networks.

PubMed

Torres, Rita; Pereira, Elisa; Vasconcelos, Vítor; Teles, Luís Oliva

2011-06-01

The ability of general regression neural networks (GRNN) to forecast the density of cyanobacteria in the Torrão reservoir (Tâmega river, Portugal), in a period of 15 days, based on three years of collected physical and chemical data, was assessed. Several models were developed and 176 were selected based on their correlation values for the verification series. A time lag of 11 was used, equivalent to one sample (periods of 15 days in the summer and 30 days in the winter). Several combinations of the series were used. Input and output data collected from three depths of the reservoir were applied (surface, euphotic zone limit and bottom). The model that presented a higher average correlation value presented the correlations 0.991; 0.843; 0.978 for training, verification and test series. This model had the three series independent in time: first test series, then verification series and, finally, training series. Only six input variables were considered significant to the performance of this model: ammonia, phosphates, dissolved oxygen, water temperature, pH and water evaporation, physical and chemical parameters referring to the three depths of the reservoir. These variables are common to the next four best models produced and, although these included other input variables, their performance was not better than the selected best model.

A numerical forecast model for road meteorology

NASA Astrophysics Data System (ADS)

Meng, Chunlei

2017-05-01

A fine-scale numerical model for road surface parameters prediction (BJ-ROME) is developed based on the Common Land Model. The model is validated using in situ observation data measured by the ROSA road weather stations of Vaisala Company, Finland. BJ-ROME not only takes into account road surface factors, such as imperviousness, relatively low albedo, high heat capacity, and high heat conductivity, but also considers the influence of urban anthropogenic heat, impervious surface evaporation, and urban land-use/land-cover changes. The forecast time span and the update interval of BJ-ROME in vocational operation are 24 and 3 h, respectively. The validation results indicate that BJ-ROME can successfully simulate the diurnal variation of road surface temperature both under clear-sky and rainfall conditions. BJ-ROME can simulate road water and snow depth well if the artificial removing was considered. Road surface energy balance in rainy days is quite different from that in clear-sky conditions. Road evaporation could not be neglected in road surface water cycle research. The results of sensitivity analysis show solar radiation correction coefficient, asphalt depth, and asphalt heat conductivity are important parameters in road interface temperatures simulation. The prediction results could be used as a reference of maintenance decision support system to mitigate the traffic jam and urban water logging especially in large cities.

Post-Closure Inspection Report for the Tonopah Test Range, Nevada, For Calendar Year 2011

DOE Office of Scientific and Technical Information (OSTI.GOV)

NSTec Environmental Restoration

This report provides the results of the annual post-closure inspections conducted at the closed Corrective Action Units (CAUs) located on the Tonopah Test Range (TTR), Nevada. This report covers calendar year 2011 and includes inspection and repair activities completed at the following CAUs: (1) CAU 400: Bomblet Pit and Five Points Landfill (TTR); (2) CAU 407: Roller Coaster RadSafe Area (TTR); (3) CAU 424: Area 3 Landfill Complexes (TTR); (4) CAU 453: Area 9 UXO Landfill (TTR); and (5) CAU 487: Thunderwell Site (TTR) Inspections were conducted according to the post-closure plans in the approved Closure Reports. The post-closure inspectionmore » plan for each CAU is included in Appendix B. The inspection checklists are included in Appendix C, field notes are included in Appendix D, and photographs taken during inspections are included in Appendix E. The annual post-closure inspections were conducted May 3 and 4, 2011. Maintenance was performed at CAU 424, CAU 453, and CAU 487. At CAU 424, two surface grade monuments at Landfill Cell A3-3 could not be located during the inspection. The two monuments were located and marked with lava rock on July 13, 2011. At CAU 453, there was evidence of animal burrowing. Animal burrows were backfilled on July 13, 2011. At CAU 487, one use restriction warning sign was missing, and wording was faded on the remaining signs. A large animal burrow was also present. The signs were replaced, and the animal burrow was backfilled on July 12, 2011. As a best management practice, the use restriction warning signs at CAU 407 were replaced with standard Federal Facility Agreement and Consent Order signs on July 13, 2011. Vegetation monitoring was performed at the CAU 400 Five Points Landfill and CAU 407 in June 2011, and the vegetation monitoring report is included in Appendix F.« less

Thermal characteristics of amphibian microhabitats in a fire-disturbed landscape

USGS Publications Warehouse

Hossack, B.R.; Eby, L.A.; Guscio, C.G.; Corn, P.S.

2009-01-01

Disturbance has long been a central issue in amphibian conservation, often regarding negative effects of logging or other forest management activities, but some amphibians seem to prefer disturbed habitats. After documenting increased use of recently burned forests by boreal toads (Bufo boreas), we hypothesized that burned habitats provided improved thermal opportunities in terrestrial habitats. We tested this hypothesis by conducting a radio telemetry study of habitat use (reported previously) and by using physical models that simulated the temperature of adult toads. We deployed 108 physical models in and adjacent to a 1-year old burn using a fully-replicated design with three burn severities (unburned, partial, high severity) and four microhabitats (open surface, under vegetation, under log, in burrow). Model temperatures were compared to a range of preferred temperatures in published studies. We found 70% more observations within the preferred temperature range of B. boreas in forests burned with high severity than in unburned areas. Burned forest was warmer than unburned forest across all microhabitats, but the largest relative difference was in burrows, which averaged 3 ??C warmer in high-severity burn areas and remained warmer though the night. More than twice as many observations were within the preferred temperature range in high-severity burrows than in unburned burrows. Areas burned with high severity were still warmer than unburned forest 3 years after the fire. Habitat use of toads during the concurrent radio telemetry study matched that predicted by the physical models. These results suggest there are fitness-linked benefits to toads using burned habitats, such as increased growth, fertility, and possibly disease resistance. However, increased soil temperatures that result from wildfire may be detrimental to other amphibian species that prefer cooler temperatures and stable environments. More broadly, our data illustrate the use of physical models to measure and interpret changes that amphibians may experience from disturbance, and highlight the need for research linking vital rates such as growth and survival to disturbance.

Community-specific impacts of exotic earthworm invasions on soil carbon dynamics in a sandy temperate forest.

PubMed

Crumsey, Jasmine M; Le Moine, James M; Capowiez, Yvan; Goodsitt, Mitchell M; Larson, Sandra C; Kling, George W; Nadelhoffer, Knute J

2013-12-01

Exotic earthworm introductions can alter above- and belowground properties of temperate forests, but the net impacts on forest soil carbon (C) dynamics are poorly understood. We used a mesocosm experiment to examine the impacts of earthworm species belonging to three different ecological groups (Lumbricus terrestris [anecic], Aporrectodea trapezoides [endogeic], and Eisenia fetida [epigeic]) on C distributions and storage in reconstructed soil profiles from a sandy temperate forest soil by measuring CO2 and dissolved organic carbon (DOC) losses, litter C incorporation into soil, and soil C storage with monospecific and species combinations as treatments. Soil CO2 loss was 30% greater from the Endogeic x Epigeic treatment than from controls (no earthworms) over the first 45 days; CO2 losses from monospecific treatments did not differ from controls. DOC losses were three orders of magnitude lower than CO2 losses, and were similar across earthworm community treatments. Communities with the anecic species accelerated litter C mass loss by 31-39% with differential mass loss of litter types (Acer rubrum > Populus grandidentata > Fagus grandifolia > Quercus rubra > or = Pinus strobus) indicative of leaf litter preference. Burrow system volume, continuity, and size distribution differed across earthworm treatments but did not affect cumulative CO2 or DOC losses. However, burrow system structure controlled vertical C redistribution by mediating the contributions of leaf litter to A-horizon C and N pools, as indicated by strong correlations between (1) subsurface vertical burrows made by anecic species, and accelerated leaf litter mass losses (with the exception of P. strobus); and (2) dense burrow networks in the A-horizon and the C and N properties of these pools. Final soil C storage was slightly lower in earthworm treatments, indicating that increased leaf litter C inputs into soil were more than offset by losses as CO2 and DOC across earthworm community treatments.

Effects of commercially produced almond by-products on chemotherapy-induced mucositis in rats

PubMed Central

Whittaker, Alexandra L; Zhu, Ying; Howarth, Gordon S; Loung, Chi S; Bastian, Susan E P; Wirthensohn, Michelle G

2017-01-01

AIM To determine if almond extracts reduce the severity of chemotherapy-induced mucositis as determined through biochemical, histological and behavioural markers. METHODS Intestinal mucositis is a debilitating condition characterized by inflammation and ulceration of the gastrointestinal mucosa experienced by cancer patients undergoing chemotherapy. Certain bioactive plant products have shown promise in accelerating mucosal repair and alleviating clinical symptoms. This study evaluated almond extracts for their potential to reduce the severity of chemotherapy-induced mucositis in Dark Agouti rats. Female Dark Agouti rats were gavaged (days 3-11) with either PBS, almond hull or almond blanched water extract at two doses, and were injected intraperitoneally with 5-fluorouracil (5-FU-150 mg/kg) or saline on day 9 to induce mucositis. Burrowing behavior, histological parameters and myeloperoxidase activity were assessed. RESULTS Bodyweight was significantly reduced in rats that received 5-FU compared to saline-treated controls (P < 0.05). Rats administered 5-FU significantly increased jejunal and ileal MPO levels (1048%; P < 0.001 and 409%; P < 0.001), compared to healthy controls. Almond hull extract caused a pro-inflammatory response in rats with mucositis as evidenced by increased myeloperoxidase activity in the jejunum when compared to 5-FU alone (rise 50%, 1088 ± 96 U/g vs 723 ± 135 U/g, P = 0.02). Other extract-related effects on inflammatory activity were minimal. 5-FU significantly increased histological severity score compared to healthy controls confirming the presence of mucositis (median of 9.75 vs 0; P < 0.001). The extracts had no ameliorating effect on histological severity score in the jejunum or ileum. Burrowing behavior was significantly reduced in all chemotherapy-treated groups (P = 0.001). The extracts failed to normalize burrowing activity to baseline levels. CONCLUSION Almond extracts at these dosages offer little beneficial effect on mucositis severity. Burrowing provides a novel measure of affective state in studies of chemotherapy-induced mucositis. PMID:29184703

Comparison of 5 benthic samplers to collect burrowing mayfly nymphs (Hexagenia spp.:Ephemeroptera:Ephemeridae) in sediments of the Laurentian Great Lakes

USGS Publications Warehouse

Schloesser, Don W.; Nalepa, Thomas F.

2002-01-01

The recent return of burrowing mayfly nymphs (Hexagenia spp.) to western Lake Erie of the Laurentian Great Lakes has prompted a need to find a sampler to obtain the most accurate (i.e., highest mean density) and precise (i.e., lowest mean variance) abundance estimates of nymphs. The abundance of burrowing nymphs is important because it is being used as a measure of ecosystem health to determine management goals for fisheries and pollution abatement programs for waters in both North America and Europe. We compared efficiencies of 5 benthic grab samplers (Ponar, Ekman, petite Ponar, Petersen, and orange-peel) to collect nymphs from sediments of western Lake Erie and Lake St. Clair. Samplers were used at one site with soft substrates in both lakes in 1997 (Ponar, Ekman, petite Ponar, and Petersen) and 1998 (Ponar and Ekman), and at one site with soft and one site with hard substrates in Lake St. Clair in 1999 (Ponar and orange-peel). In addition, the Ponar, Ekman, and Petersen samplers were used at one site with soft substrates of western Lake Erie in 2000 to examine the causes of differences among samplers. The Ponar was more accurate than the other samplers; it collected the highest densities of nymphs for 31 of 32 date and site comparisons. In soft substrates, the order of decreasing overall densities was: Ponar>Petersen>petite Ponar>Ekman in western Lake Erie and Ponar>Petersen> Ekman>petite Ponar in Lake St. Clair in 1997, Ponar>Ekman in both lakes in 1998, and Ponar>orange-peel in Lake St. Clair in 1999. In hard substrates, the Ponar was more accurate than the orange-peel in Lake St. Clair in 1999. Precision of the Ponar was generally greater than the Ekman, petite Ponar, and Petersen but similar to the orange-peel. Higher densities of nymphs obtained with the Ponar than other grabs are attributed to its relatively heavy weight, which allows it to sample deeper in sediments than the Ekman and petite Ponar. Also, the Ponar has a screened top, which allows it to minimize hydraulic shock waves more than the Petersen, and uniform sides, which allow it to sample nymphs more uniformly through sediments than the orange-peel. We recommend that future estimates of burrowing mayfly densities be obtained with a standard Ponar sampler similar to the one used in our study because it will yield the most accurate and precise measurements of burrowing mayfly nymphs such as Hexagenia spp.

CSEP-Japan: The Japanese node of the collaboratory for the study of earthquake predictability

NASA Astrophysics Data System (ADS)

Yokoi, S.; Tsuruoka, H.; Nanjo, K.; Hirata, N.

2011-12-01

Collaboratory for the Study of Earthquake Predictability (CSEP) is a global project of earthquake predictability research. The final goal of this project is to have a look for the intrinsic predictability of the earthquake rupture process through forecast testing experiments. The Earthquake Research Institute, the University of Tokyo joined the CSEP and started the Japanese testing center called as CSEP-Japan. This testing center constitutes an open access to researchers contributing earthquake forecast models for applied to Japan. A total of 91 earthquake forecast models were submitted on the prospective experiment starting from 1 November 2009. The models are separated into 4 testing classes (1 day, 3 months, 1 year and 3 years) and 3 testing regions covering an area of Japan including sea area, Japanese mainland and Kanto district. We evaluate the performance of the models in the official suite of tests defined by the CSEP. The experiments of 1-day, 3-month, 1-year and 3-year forecasting classes were implemented for 92 rounds, 4 rounds, 1round and 0 round (now in progress), respectively. The results of the 3-month class gave us new knowledge concerning statistical forecasting models. All models showed a good performance for magnitude forecasting. On the other hand, observation is hardly consistent in space-distribution with most models in some cases where many earthquakes occurred at the same spot. Throughout the experiment, it has been clarified that some properties of the CSEP's evaluation tests such as the L-test show strong correlation with the N-test. We are now processing to own (cyber-) infrastructure to support the forecast experiment as follows. (1) Japanese seismicity has changed since the 2011 Tohoku earthquake. The 3rd call for forecasting models was announced in order to promote model improvement for forecasting earthquakes after this earthquake. So, we provide Japanese seismicity catalog maintained by JMA for modelers to study how seismicity changes in Japan. (2) Now we prepare the 3-D forecasting experiment with a depth range of 0 to 100 km in Kanto region. (3) The testing center improved an evaluation system for 1-day class experiment because this testing class required fast calculation ability to finish forecasting and testing results within one day. This development will make a real-time forecasting system come true. (4) The special issue of 1st part titled Earthquake Forecast Testing Experiment in Japan was published on the Earth, Planets and Space Vol. 63, No.3, 2011 on March, 2011. This issue includes papers of algorithm of statistical models participating our experiment and outline of the experiment in Japan. The 2nd part of this issue, which is now on line, will be published soon. In this presentation, we will overview CSEP-Japan and results of the experiments, and discuss direction of our activity. An outline of the experiment and activities of the Japanese Testing Center are published on our WEB site;

The rhinoceros among Serpents: Comparative anatomy and experimental biophysics of Calabar burrowing python (Calabaria reinhardtii) skin.

PubMed

Han, Dawei; Young, Bruce A

2018-01-01

The Calabar burrowing python (Calabaria reinhardtii) has a unique combination of marked thickness of the integumentary layers, a highly organized lamellate arrangement of the dermal collagen bundles, and a reduction in the size of the interscale hinge region of the integument. Biomechanical testing demonstrates that the skin of C. reinhardtii is more resistant to penetration than the skin of other snakes. The laminar arrangement of the collagen bundles provides for penetrative resistance, even while maintaining the flexibility characteristic of snake skin. Considering the life history of this species, it is hypothesized that the specialized integument of C. reinhardtii is a passive defensive mechanism against penetrative bites from maternal rodents and predators. © 2017 Wiley Periodicals, Inc.

Plague in a Colony of Gunnison's Prairie Dogs ( Cynomys gunnisoni) Despite Three Years of Infusions of Burrows with 0.05% Deltamethrin to Kill Fleas.

PubMed

Hoogland, John L; Biggins, Dean E; Blackford, Nathaniel; Eads, David A; Long, Dustin; Rodriguez, Mariana Rivera; Ross, Lauren M; Tobey, Sarah; White, Emma M

2018-04-01

At Valles Caldera National Preserve in New Mexico, US, infusing Gunnison's prairie dog ( Cynomys gunnisoni) burrows with an insecticide dust containing 0.05% deltamethrin killed fleas which transmit bubonic plague. The reduction in the number of fleas per prairie dog was significant and dramatic immediately after infusions, with a suggestion that the reduction persisted for as long as 12 mo. Despite the lower flea counts, however, a plague epizootic killed >95% of prairie dogs after 3 yr of infusions (once per year). More research is necessary for a better understanding of the efficacy of insecticide dusts at lowering flea counts and protecting prairie dogs from plague.

Diagnosis, prevention, and treatment of scabies.

PubMed

Shimose, Luis; Munoz-Price, L Silvia

2013-10-01

Scabies remains a public health problem, especially in developing countries, with a worldwide incidence of approximately 300 million cases each year. Prolonged skin-to-skin contact is necessary to allow the transmission of the causative mite, Sarcoptes scabiei. Classic scabies presents with burrows, erythematous papules, and generalized pruritus. Clinical variants include nodular scabies and crusted scabies, also called Norwegian scabies. The diagnosis is based mainly on history and physical examination, but definitive diagnosis depends on direct visualization of the mites under microscopy. Alternative diagnostic methods include the burrow ink test, video-dermatoscopy, newly serologic tests like PCR/ELISA, and specific IgE directed toward major mite components. Treatment of scabies consists of either topical permethrin or oral ivermectin, although the optimal regimen is still unclear.

A 3-month long operational implementation of an ensemble prediction system of storm surge for the city of Venice

NASA Astrophysics Data System (ADS)

Mel, Riccardo; Lionello, Piero

2014-05-01

Advantages of an ensemble prediction forecast (EPF) technique that has been used for sea level (SL) prediction at the Northern Adriatic coast are investigated. The aims is to explore whether EPF is more precise than the traditional Deterministic Forecast (DF) and the value of the added information, mainly on forecast uncertainty. Improving the SL forecast for the city of Venice is of paramount importance for the management and maintenance of this historical city and for operating the movable barriers that are presently being built for its protection. The operational practice is simulated for three months from 1st October to 31st December 2010. The EPF is based on the HYPSE model, which is a standard single-layer nonlinear shallow water model, whose equations are derived from the depth averaged momentum equations and predicts the SL. A description of the model is available in the scientific literature. Forcing of HYPSE are provided by three different sets of 3-hourly ECMWF 10m-wind and MSLP fields: the high resolution meteorological forecast (which is used for the deterministic SL forecast, DF), the control run forecast (CRF, that differs from the DF forecast only for it lower meteorological fields resolution) and the 50 ensemble members of the ECMWF EPS (which are used for the SL-EPS. The resolution of DF fields is T1279 and resolution of both CRF and ECMWF EPS fields is T639 resolution. The 10m wind and MSLP fields have been downloaded at 0.125degs (DF) and 0.25degs(CRF and EPS) and linearly interpolated to the HYPSE grid (which is the same for all simulations). The version of HYPSE used in the SR EPS uses a rectangular mesh grid of variable size, which has the minimum grid step (0.03 degrees) in the northern part of the Adriatic Sea, from where grid step increases with a 1.01 factor in both latitude and longitude (In practice, resolution varies in the range from 3.3 to 7km). Results are analyzed considering the EPS spread, the rms of the simulations, the Brier Skill Score and are compared to observations at tide gauges distributed along the Croatian and Italian coast of the Adriatic Sea. It is shown that the ensemble spread is indeed a reliable indicator of the uncertainty of the storm surge prediction. Further, results show how uncertainty depends on the predicted value of sea level and how it increases with the forecast time range. The accuracy of the ensemble mean forecast is actually larger than that of the deterministic forecast, though the latter is produced by meteorological forcings at higher resolution

Multitracing Experiment With Solved and Particulate Tracers In An Unsaturated Field Soil

NASA Astrophysics Data System (ADS)

Burkhardt, M.; Kasteel, R.; Vereecken, H.

Solute movement and colloid migration follow preferential flow paths in structured soils at the field scale. The use of microsphreres is a possible option to mimic colloid transport through the vadose zone into the groundwater. We present results of multi- tracing experiments conducted in an Orthic Luvisol using bromide (Br-), the reactive dye tracer Brilliant Blue (BB) and microspheres. The fluorescent microspheres (1 and 10 µm in diameter) were functionalized with a negative surface charge. Eight field plots (about 2 m2) were irrigated with 10 mm and 40 mm during 6 h. Four field plots were sampled directly after the irrgation, the others were exposed for 90 days to natural wheather conditions. Photographs of horizontal cross-sections and disturbed soil sam- ples were taken every 5 to 10 cm down to a depth of 160 cm. Image analysis was used to derive concentration distributions of BB using a calibration relationship between concentration and color spectra. The microspheres were quantified after desorption of the soil samples by fluorescent microscopy and image analysis. We used moment analysis to characterize transport phenomena. We found that transport through the soil matrix was affected by sorption, but all of the applied compounds were transported through preferential flow paths (earthworm burrows) down to a depth of 160 cm irre- spective of their chemical properties. Furthermore, this study shows that microspheres can be used to mimic colloid facilitated transport under unsaturated conditions in a field soil.

Bayesian Atmospheric Radiative Transfer (BART)Thermochemical Equilibrium Abundance (TEA) Code and Application to WASP-43b

NASA Astrophysics Data System (ADS)

Blecic, Jasmina; Harrington, Joseph; Bowman, Matthew O.; Cubillos, Patricio E.; Stemm, Madison; Foster, Andrew

2014-11-01

We present a new, open-source, Thermochemical Equilibrium Abundances (TEA) code that calculates the abundances of gaseous molecular species. TEA uses the Gibbs-free-energy minimization method with an iterative Lagrangian optimization scheme. It initializes the radiative-transfer calculation in our Bayesian Atmospheric Radiative Transfer (BART) code. Given elemental abundances, TEA calculates molecular abundances for a particular temperature and pressure or a list of temperature-pressure pairs. The code is tested against the original method developed by White at al. (1958), the analytic method developed by Burrows and Sharp (1999), and the Newton-Raphson method implemented in the open-source Chemical Equilibrium with Applications (CEA) code. TEA is written in Python and is available to the community via the open-source development site GitHub.com. We also present BART applied to eclipse depths of WASP-43b exoplanet, constraining atmospheric thermal and chemical parameters. This work was supported by NASA Planetary Atmospheres grant NNX12AI69G and NASA Astrophysics Data Analysis Program grant NNX13AF38G. JB holds a NASA Earth and Space Science Fellowship.

Operational use of VIIRS Multispectral Imagery and NUCAPS Soundings in Short-term Weather Forecasting

NASA Astrophysics Data System (ADS)

Molthan, A.; Fuell, K. K.; Berndt, E.; Schultz, L. A.

2016-12-01

The NASA/SPoRT Program supports the NOAA/JPSS program through the transition of S-NPP VIIRS and CrIS/ATMS products to prepare users for the upcoming JPSS-1/-2 missions. Several multispectral (i.e. RGB) imagery products can be created from VIIRS based on internationally-accepted recipes developed by EUMETSAT. Initial transition of a Nighttime Microphysics RGB to operations revealed improved distinction between low clouds and fog compared with legacy satellite imagery, and hence, improvement in short-term aviation and public forecasts. An increased number of S-NPP passes at high latitude combined with other instruments led to a series of "microphysical" RGBs to be introduced to NWS forecasters in Alaska at both local weather offices as well as regional aviation centers. Forecasters in Alaska also applied VIIRS microphysical RGBs to identify small scale features such as valley/coastal fog, volcanic ash, and convective precipitation. Further use of a "Dust" RGB in the U.S. southwest led to changes in NWS forecast products due to improvements in detection and monitoring of dust aloft. As multispectral imagery has gained operational acceptance, additional work has begun to develop quantitative products to assist users with their interpretation of RGB imagery. For example, National Center forecasters often use an "Air Mass" RGB to differentiate between possible stratospheric /tropospheric interactions, moist tropical air masses, and cool, continental/maritime air masses. Research was done to demonstrate how the NUCAPS CrIS/ATMS infrared retrieved temperature, moisture, and ozone profiles can aid Air Mass RGB imagery interpretation as well as how these quantitative values are important for anticipating tropical to extratropical transition events. In addition, an enhanced stratospheric depth product was developed to identify the dynamic tropopause from the NUCAPS retrieved ozone profiles to aid identification of stratospheric air influence. Forecasters from National Centers evaluated the NUCAPS profiles as a tool for anticipating extratropical transition during the latter half of the 2016 hurricane season. Examples of multispectral and sounding product impacts in near-realtime operations from VIIRS and CrIS/ATMS are presented here.

Surface wave effect on the upper ocean in marine forecast

NASA Astrophysics Data System (ADS)

Wang, Guansuo; Qiao, Fangli; Xia, Changshui; Zhao, Chang

2015-04-01

An Operational Coupled Forecast System for the seas off China and adjacent (OCFS-C) is constructed based on the paralleled wave-circulation coupled model, which is tested with comprehensive experiments and operational since November 1st, 2007. The main feature of the system is that the wave-induced mixing is considered in circulation model. Daily analyses and three day forecasts of three-dimensional temperature, salinity, currents and wave height are produced. Coverage is global at 1/2 degreed resolution with nested models up to 1/24 degree resolution in China Sea. Daily remote sensing sea surface temperatures (SST) are taken to relax to an analytical product as hot restarting fields for OCFS-C by the Nudging techniques. Forecasting-data inter-comparisons are performed to measure the effectiveness of OCFS-C in predicting upper-ocean quantities including SST, mixed layer depth (MLD) and subsurface temperature. The variety of performance with lead time and real-time is discussed as well using the daily statistic results for SST between forecast and satellite data. Several buoy observations and many Argo profiles are used for this validation. Except the conventional statistical metrics, non-dimension skill scores (SS) is taken to estimate forecast skill. Model SST comparisons with more one year-long SST time series from 2 buoys given a large SS value (more than 0.90). And skill in predicting the seasonal variability of SST is confirmed. Model subsurface temperature comparisons with that from a lot of Argo profiles indicated that OCFS-C has low skill in predicting subsurface temperatures between 80m and 120m. Inter-comparisons of MLD reveal that MLD from model is shallower than that from Argo profiles by about 12m. QCFS-C is successful and steady in predicting MLD. The daily statistic results for SST between 1-d, 2-d and 3-d forecast and data is adopted to describe variability of Skill in predicting SST with lead time or real time. In a word QCFS-C shows reasonable accuracy over a series of studies designed to test ability to predict upper ocean conditions.

Review of Studies of Mechanoelectrical Transformations in Rocks in Russia and Abroad

NASA Astrophysics Data System (ADS)

Pomishin, E.; Yavorovich, L.

2016-06-01

The problem of monitoring and forecast of dynamic manifestations of rock masses becomes immediate in the mining industry because of the growth of mining work intensity and changeover to the mining operations in deeper levels. The article presents a short review of the scientific works of foreign researchers for more complete and in-depth study of geophysical methods of control of the stress-strain state and bump hazard of rock masses.

Improving the Representation of Snow Crystal Properties Within a Single-Moment Microphysics Scheme

NASA Technical Reports Server (NTRS)

Molthan, Andrew L.; Petersen, Walter A.; Case, Jonathan L.; Dembek, S. R.

2010-01-01

As computational resources continue their expansion, weather forecast models are transitioning to the use of parameterizations that predict the evolution of hydrometeors and their microphysical processes, rather than estimating the bulk effects of clouds and precipitation that occur on a sub-grid scale. These parameterizations are referred to as single-moment, bulk water microphysics schemes, as they predict the total water mass among hydrometeors in a limited number of classes. Although the development of single moment microphysics schemes have often been driven by the need to predict the structure of convective storms, they may also provide value in predicting accumulations of snowfall. Predicting the accumulation of snowfall presents unique challenges to forecasters and microphysics schemes. In cases where surface temperatures are near freezing, accumulated depth often depends upon the snowfall rate and the ability to overcome an initial warm layer. Precipitation efficiency relates to the dominant ice crystal habit, as dendrites and plates have relatively large surface areas for the accretion of cloud water and ice, but are only favored within a narrow range of ice supersaturation and temperature. Forecast models and their parameterizations must accurately represent the characteristics of snow crystal populations, such as their size distribution, bulk density and fall speed. These properties relate to the vertical distribution of ice within simulated clouds, the temperature profile through latent heat release, and the eventual precipitation rate measured at the surface. The NASA Goddard, single-moment microphysics scheme is available to the operational forecast community as an option within the Weather Research and Forecasting (WRF) model. The NASA Goddard scheme predicts the occurrence of up to six classes of water mass: vapor, cloud ice, cloud water, rain, snow and either graupel or hail.

Plant inputs, microbial carbon use in soil and decomposition under warming: effects of warming are depth dependent

NASA Astrophysics Data System (ADS)

Pendall, E.; Carrillo, Y.; Dijkstra, F. A.

2017-12-01

Future climate will include warmer conditions but impacts on soil C cycling remain uncertain and so are the potential warming-driven feedbacks. Net impacts will depend on the balance of effects on microbial activity and plant inputs. Soil depth is likely to be a critical factor driving this balance as it integrates gradients in belowground biomass, microbial activity and environmental variables. Most empirical studies focus on one soil layer and soil C forecasting relies on broad assumptions about effects of depth. Our limited understanding of the use of available C by soil microbes under climate change across depths is a critical source of uncertainty. Long-term labelling of plant biomass with C isotopic tracers in intact systems allows us to follow the dynamics of different soil C pools including the net accumulation of newly fixed C and the net loss of native C. These can be combined with concurrent observations of microbial use of C pools to explore the impacts of depth on the relationships between plant inputs and microbial C use. We evaluated belowground biomass, in-situ root decomposition and incorporation of plant-derived C into soil C and microbial C at 0-5 cm and 5-15 cmover 7 years at the Prairie Heating And CO2 Enrichment experiment. PHACE was a factorial manipulation of CO2 and warming in a native mixed grass prairie in Wyoming, USA. We used the continuous fumigation with labelled CO2 in the elevated CO2 treatments to study the C dynamics under unwarmed and warmed conditions. Shallower soils had three times the density of biomass as deeper soils. Warming increased biomass in both depths but this effect was weaker in deeper soils. Root litter mass loss in deeper soil was one third that of the shallow and was not affected by warming. Consistent with biomass distribution, incorporation of plant-derived C into soil and microbial C was lower in deeper soils and higher with warming. However, in contrast to the effect of warming on biomass, the effect of warming on incorporation of plant derived C into microbes was stronger in deeper soils. Thus, warming made microbes incorporate relatively more plant inputs in deeper soils, where biomass was less stimulated. This dependency on depth of impacts of warming on microbial C cycling should have important implications for forecasting potential feedbacks of soil C to climate change.

ENSO modulation of tropical Indian Ocean subseasonal variability

NASA Astrophysics Data System (ADS)

Jung, Eunsil; Kirtman, Ben P.

2016-12-01

In this study, we use 30 years of retrospective climate model forecasts and observational estimates to show that El Niño/Southern Oscillation (ENSO) affects the amplitude of subseasonal variability of sea surface temperature (SST) in the southwest Indian Ocean, an important Tropical Intraseasonal Oscillation (TISO) onset region. The analysis shows that deeper background mixed-layer depths and warmer upper ocean conditions during El Niño reduce the amplitude of the subseasonal SST variability over Seychelles-Chagos Thermocline Ridge (SCTR), which may reduce SST-wind coupling and the amplitude of TISO variability. The opposite holds for La Niña where the shallower mixed-layer depth enhances SST variability over SCTR, which may increase SST-wind coupling and the amplitude of TISO variability.

Relative role of pore water versus ingested sediment in bioavailability of organic contaminants in marine sediments

DOE Office of Scientific and Technical Information (OSTI.GOV)

Forbes, T.L.; Hansen, R.; Kure, L.K.

Experimental data for fluoranthene and feeding selectivity in combination with reaction-diffusion modeling suggest that ingestion of contaminated sediment may often be the dominant uptake pathway for deposit-feeding invertebrates in sediments. A dietary absorption efficiency of 56% and accompanying forage ratio of 2.4 were measured using natural sediment that had been dual-labeled ({sup 14}C:{sup 51}Cr) with fluoranthene and fed to the marine deposit-feeding polychaete Capitella species I. Only 3 to 4% of the total absorption could be accounted for by desorption during gut passage. These data were then used as input into a reaction-diffusion model to calculate the importance of uptakemore » from ingested sediment relative to pore-water exposure. The calculations predict a fluoranthene dietary uptake flux that is 20 to 30 times greater than that due to pore water. Factors that act to modify or control the formation of local chemical gradients, boundary layers, or dietary absorption rates including particle selection or burrow construction will be important in determining the relative importance of potential exposure pathways. From a chemical perspective, the kinetics of the adsorption and desorption process are especially important as they will strongly influence the boundary layer immediately surrounding burrowing animals or irrigated tubes. The most important biological factors likely include irrigation behavior and burrow density and size.« less

The diagnostic accuracy of dermoscopy for scabies.

PubMed

Park, Ju Hyuk; Kim, Chul Woo; Kim, Sang Seok

2012-05-01

Scabies is a contagious skin infestation characterized clinically by nocturnal pruritus, visible burrows and contagiousness. Dermoscopy has been suggested as an alternative for diagnosing scabies. But, there have been few well-designed studies evaluating the diagnostic accuracy of dermoscopy. We tried to confirm the diagnostic accuracy of dermoscopy for diagnosing scabies. We also tried to demonstrate specific circumstances in which dermoscopic identification of mites ("with dermoscopy") is more useful in diagnosing scabies, and to identify the specific clinical findings that could be used as a possible marker in diagnosing scabies. We compared the scraping procedure "with dermoscopy" and "without it" in 49 patients, measuring the duration and outcome of each procedure. Also, we tried to find the specific clinical factors associated with our objects. The skin scraping "with dermoscopy" was superior to "without it" with respect to the duration and accuracy of the procedure. A history of previous steroid treatment was associated with the superiority of dermoscopy. The correlation between the presence of visible burrows and the positive outcomes of "with dermoscopy" was statistically significant. Skin scraping with dermoscopy is implicated as the diagnostic method of choice for scabies at the present time. Dermoscopy is especially useful in diagnosis of incognito scabies. In addition, the presence of visible burrows could be a reliable positive marker of scabies in the absence of dermoscopy or microscopy data.

Ghost crab populations respond to changing morphodynamic and habitat properties on sandy beaches

NASA Astrophysics Data System (ADS)

Lucrezi, Serena

2015-01-01

The morphodynamic state and habitat properties of microtidal sandy beaches largely account for variations in macrofauna structure. In ecological theory, the habitat harshness hypothesis and the habitat safety hypothesis explain variations in macrofauna populations of the intertidal and supratidal zones of sandy beaches. The former hypothesis states that intertidal macrofauna should increase from reflective to dissipative beaches. The latter hypothesis supports the idea that supratidal species are more successful on reflective beaches, given their relative independence from the swash. However, trends in abundance of supratidal species, particularly crustaceans, have been unclear and further investigation is therefore needed. This study tested the two hypotheses on the largest invertebrate intertidal-to-supratidal crustacean on sandy beaches, namely the ghost crab (genus Ocypode). Variations in ghost crab burrow density, abundance, size and across-shore distribution were measured on four warm-temperate microtidal sandy beaches in KwaZulu-Natal, South Africa. Burrow numbers increased with beach morphodynamic state, while average burrow size decreased. The steepest, narrowest and most inundation-prone beach represented the least hospitable environment for the ghost crabs. The results that are reported here tend to support the habitat harshness hypothesis. However, the relevance of i) individual physical variables, ii) tidal action, and iii) the ecology of various species, in shaping ghost crab population dynamics, is also discussed. The results contribute to the knowledge regarding population dynamics of intertidal and supratidal crustaceans across beach types.

Geomys bursars burrowing patterns: influence of season and food patch structure

USGS Publications Warehouse

Andersen, Douglas C.

1987-01-01

The relationship between belowground food resources and the pattern and pace of soil excavation by Geomys bursarius, the plains pocket gopher, was assessed during spring and autumn using replicated 18 x 18 m enclosures containing uniform arrays of food plants (Daucus carota) at spacings assumed to result in burrowing being energetically profitable (25 and 50 cm) or unprofitable (100 cm and empty). Soil excavation rate, measured in terms of either daily additions to tunnel length or volume, or the maximum volume excavated during a 3-d interval, varied greatly among individuals. No significant effect due to season or density of belowground plant biomass was detected when burrowing was profitable. Individuals readily initiated aboveground travel in unprofitable treatments. Soil bulk density was negatively related and animal body mass positively related to excavation rate. Individuals deposited from 41 to 87% of excavated soil on the ground surface; the remainder was used to backfill previously created tunnels or chambers. Plant size, but not plant spacing, affected the ratio of the volumes deposited aboveground and belowground. There was no evidence that animals in enclosures disturbed soil in a manner quantitatively or qualitatively different from free-ranging adults. The large proportions and absolute quantities (up to 30 L/d) of soil involved suggest that backfilling may affect ecosystem structure and functioning as much as surface mound-building.

Mating Signals Indicating Sexual Receptiveness Induce Unique Spatio-Temporal EEG Theta Patterns in an Anuran Species

PubMed Central

Fang, Guangzhan; Yang, Ping; Cui, Jianguo; Yao, Dezhong; Brauth, Steven E.; Tang, Yezhong

2012-01-01

Female mate choice is of importance for individual fitness as well as a determining factor in genetic diversity and speciation. Nevertheless relatively little is known about how females process information acquired from males during mate selection. In the Emei music frog, Babina daunchina, males normally call from hidden burrows and females in the reproductive stage prefer male calls produced from inside burrows compared with ones from outside burrows. The present study evaluated changes in electroencephalogram (EEG) power output in four frequency bands induced by male courtship vocalizations on both sides of the telencephalon and mesencephalon in females. The results show that (1) both the values of left hemispheric theta relative power and global lateralization in the theta band are modulated by the sexual attractiveness of the acoustic stimulus in the reproductive stage, suggesting the theta oscillation is closely correlated with processing information associated with mate choice; (2) mean relative power in the beta band is significantly greater in the mesencephalon than the left telencephalon, regardless of reproductive status or the biological significance of signals, indicating it is associated with processing acoustic features and (3) relative power in the delta and alpha bands are not affected by reproductive status or acoustic stimuli. The results imply that EEG power in the theta and beta bands reflect different information processing mechanisms related to vocal recognition and auditory perception in anurans. PMID:23285010