Sample records for canela sassafras ocotea

  1. Sassafras oil overdose

    MedlinePlus

    Sassafras oil comes from the root bark of the sassafras tree. Sassafras oil overdose occurs when someone swallows more than the ... Safrole is the poisonous ingredient in sassafras oil. It is a clear or ... yellow oily liquid. It can be dangerous in large amounts.

  2. First report of laurel wilt, caused by Raffaelea lauricola , on Sassafras ( Sassafras albidum ) in Arkansas

    Treesearch

    Rabiu Olatinwo; C. Barton; Stephen Fraedrich; W. Johnson; J. Hwang

    2016-01-01

    Laurel wilt, caused by Raffaelea lauricola T.C. Harrin., Aghayeva & Fraedrich, is a lethal disease that affects members of the laurel family (Lauraceae) including avocado (Persea americana Mill), redbay (Persea borbonia [L.] Spreng., Nees), and sassafras (Sassafras albidum [Nutt.]). The fungus is a symbiont of an exotic ambrosia beetle (Xyleborus glabratus...

  3. First report of Laurel Wilt caused by Rafffaelea lauricola on sassafras in Mississippi

    Treesearch

    J.J. Riggins; S.W. Fraedrich; T.C. Harrington

    2011-01-01

    Laurel wilt is caused by the fungus Raffaelea lauricola T.C. Harrin., Aghayeva & Fraedrich and is lethal to redbay (Persea borbonia (L.) Spreng.), sassafras (Sassafras albidum (Nutt.) Nees), and other species in the Lauraceae (1). The fungus is carried by the redbay ambrosia beetle (Xyleborus glabratus Eichh.), which is native to Asia.

  4. Status of Sassafras albidum (Nutt.) Nees in the presence of laurel wilt disease and throughout the eastern United States

    Treesearch

    KaDonna C. Randolph

    2017-01-01

    Sassafras albidum (Sassafras) is an ecologically important tree species that is widely distributed throughout the eastern United States. Sassafras is presently threatened by Raffaelea lauricola, a fungus vectored by Xyleborus glabratus (Coleoptera: Curculionidae: Scolytinae; Redbay Ambrosia Beetle), which...

  5. 75 FR 81125 - Drawbridge Operation Regulation; Sassafras River, Georgetown, MD

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-12-27

    ..., in Georgetown, MD. The deviation is necessary to facilitate mechanical repairs and gate replacement... facilitate mechanical repairs and barrier gate replacement. The Sassafras River Bridge (Route 213), at mile...

  6. 21 CFR 172.580 - Safrole-free extract of sassafras.

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... 172.580 Food and Drugs FOOD AND DRUG ADMINISTRATION, DEPARTMENT OF HEALTH AND HUMAN SERVICES (CONTINUED) FOOD FOR HUMAN CONSUMPTION (CONTINUED) FOOD ADDITIVES PERMITTED FOR DIRECT ADDITION TO FOOD FOR HUMAN CONSUMPTION Flavoring Agents and Related Substances § 172.580 Safrole-free extract of sassafras...

  7. 21 CFR 172.580 - Safrole-free extract of sassafras.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 172.580 Food and Drugs FOOD AND DRUG ADMINISTRATION, DEPARTMENT OF HEALTH AND HUMAN SERVICES (CONTINUED) FOOD FOR HUMAN CONSUMPTION (CONTINUED) FOOD ADDITIVES PERMITTED FOR DIRECT ADDITION TO FOOD FOR HUMAN CONSUMPTION Flavoring Agents and Related Substances § 172.580 Safrole-free extract of sassafras...

  8. Development and characterization of microsatellite loci for Ocotea species (Lauraceae) threatened with extinction.

    PubMed

    Martins, E M; Martinelli, G; Arbetman, M P; Lamont, R W; Simões-Araújo, J L; Powell, D; Ciampi-Guillardi, M; Baldauf, C; Quinet, A; Galisa, P; Shapcott, A

    2014-07-07

    The Atlantic rainforest species Ocotea catharinensis, Ocotea odorifera, and Ocotea porosa have been extensively harvested in the past for timber and oil extraction and are currently listed as threatened due to overexploitation. To investigate the genetic diversity and population structure of these species, we developed 8 polymorphic microsatellite markers for O. odorifera from an enriched microsatellite library by using 2 dinucleotide repeats. The microsatellite markers were tested for cross-amplification in O. catharinensis and O. porosa. The average number of alleles per locus was 10.2, considering all loci over 2 populations of O. odorifera. Observed and expected heterozygosities for O. odorifera ranged from 0.39 to 0.93 and 0.41 to 0.92 across populations, respectively. Cross-amplification of all loci was successfully observed in O. catharinensis and O. porosa except 1 locus that was found to lack polymorphism in O. porosa. Combined probabilities of identity in the studied Ocotea species were very low ranging from 1.0 x 10-24 to 7.7 x 10-24. The probability of exclusion over all loci estimated for O. odorifera indicated a 99.9% chance of correctly excluding a random nonparent individual. The microsatellite markers described in this study have high information content and will be useful for further investigations on genetic diversity within these species and for subsequent conservation purposes.

  9. Longevity of Black Cherry, Wild Grape, and Sassafras Seed in the Forest Floor

    Treesearch

    G.W. Wendel

    1977-01-01

    The results of this study show that (1) black cherry seed remains viable in the forest floor for 3 years, with a small amount of seed germinating after 4 or 5 years; (2) sassafras seed remains viable for 6 years in the forest floor, and (3) some wild grape seed retains its viability for at least 8 years. These results are important to the forest manager in setting up...

  10. Antimycobacterial and Nitric Oxide Production Inhibitory Activities of Ocotea notata from Brazilian Restinga

    PubMed Central

    Costa, Isabela Francisca Borges; Calixto, Sanderson Dias; Heggdorne de Araujo, Marlon; Konno, Tatiana Ungaretti Paleo; Tinoco, Luzineide Wanderley; Guimarães, Denise Oliveira; Lasunskaia, Elena B.; Leal, Ivana Ramos Correa; Muzitano, Michelle Frazão

    2015-01-01

    The genus Ocotea (Lauraceae) is distributed mainly in tropical and subtropical regions. Some species of this genus as O. puberula and O. quixos have been described in the literature, showing antibacterial activity. And Ocotea macrophylla showed anti-inflammatory activity with inhibition of COX-1, COX-2, and LOX-5. The purpose of this study was the phytochemical investigation of the plant species Ocotea notata from Restinga Jurubatiba National Park, Macaé, RJ, Brazil, and the search for antimycobacterial fractions and compounds. The crude extract was evaluated for antimycobacterial activity and presented 95.75 ± 2.53% of growth inhibition at 100 µg/mL. Then, it was subjected to a liquid-liquid partition and subsequently was chemically investigated by HPLC, revealing the major presence of flavonoids. In this process the partition fractions hexane, ethyl acetate, and butanol are shown to be promising in the antimycobacterial assay. In addition, ethyl acetate fraction was chromatographed and afforded two flavonoids identified by MS and NMR as afzelin and isoquercitrin. The isolated flavonoids afzelin and isoquercitrin were evaluated for their antimycobacterial activity and for their ability to inhibit NO production by macrophages stimulated by LPS; both flavonoids isoquercitrin (Acet22) and afzelin (Acet32) were able to inhibit the production of NO by macrophages. The calculated IC50 of Acet22 and Acet32 was 1.03 and 0.85 µg/mL, respectively. PMID:25789338

  11. Antimycobacterial and nitric oxide production inhibitory activities of Ocotea notata from Brazilian restinga.

    PubMed

    Costa, Isabela Francisca Borges; Calixto, Sanderson Dias; Heggdorne de Araujo, Marlon; Konno, Tatiana Ungaretti Paleo; Tinoco, Luzineide Wanderley; Guimarães, Denise Oliveira; Lasunskaia, Elena B; Leal, Ivana Ramos Correa; Muzitano, Michelle Frazão

    2015-01-01

    The genus Ocotea (Lauraceae) is distributed mainly in tropical and subtropical regions. Some species of this genus as O. puberula and O. quixos have been described in the literature, showing antibacterial activity. And Ocotea macrophylla showed anti-inflammatory activity with inhibition of COX-1, COX-2, and LOX-5. The purpose of this study was the phytochemical investigation of the plant species Ocotea notata from Restinga Jurubatiba National Park, Macaé, RJ, Brazil, and the search for antimycobacterial fractions and compounds. The crude extract was evaluated for antimycobacterial activity and presented 95.75 ± 2.53% of growth inhibition at 100 µg/mL. Then, it was subjected to a liquid-liquid partition and subsequently was chemically investigated by HPLC, revealing the major presence of flavonoids. In this process the partition fractions hexane, ethyl acetate, and butanol are shown to be promising in the antimycobacterial assay. In addition, ethyl acetate fraction was chromatographed and afforded two flavonoids identified by MS and NMR as afzelin and isoquercitrin. The isolated flavonoids afzelin and isoquercitrin were evaluated for their antimycobacterial activity and for their ability to inhibit NO production by macrophages stimulated by LPS; both flavonoids isoquercitrin (Acet22) and afzelin (Acet32) were able to inhibit the production of NO by macrophages. The calculated IC50 of Acet22 and Acet32 was 1.03 and 0.85 µg/mL, respectively.

  12. Reproductive ecology of Ocotea catharinensis, an endangered tree species.

    PubMed

    Montagna, T; Silva, J Z; Pikart, T G; Reis, M S

    2018-05-22

    Ocotea catharinensis (Lauraceae) is an endangered tree species from the Brazilian Atlantic Rainforest. Currently, little is known about the reproductive ecology of this species. Aiming to propose conservation measures, we described aspects related to phenology, floral biology, pollination, seed dispersal and mating system of O. catharinensis. We conducted phenological observations in 62 individuals for 2 years. In one reproductive event, we evaluated nectar production, stigmatic receptivity and pollen viability. Floral visitors were observed, identified and classified on a scale of pollination effectiveness. Seed dispersers were observed and identified using camera traps. Finally, the mating system was evaluated through pollen/ovule ratios, experimental pollination treatments and genetic analysis with molecular markers. Ocotea catharinensis presented a supra-annual fruiting pattern with a substantial reduction of reproducing individuals from bud phase to ripe fruit phase. Several mechanisms prompting cross-fertilisation were identified, such as attractive, herkogamic and protogynic flowers. The main floral visitors and pollinators were from the Diptera order, and all seed dispersers were birds. The species presented a predominantly outcrossed mixed mating system with significant selfing rate (17.3%). Although based on restricted evidence, we hypothesised that selfing is an escape mechanism for situations unfavourable to cross-fertilisation. Specifically, for the studied population selfing is a response to reduced population size, which is caused by the non-reproduction of all potentially reproductive individuals and by past exploitation events. Therefore, conservation efforts should be able to enhance population sizes, as well as prevent overexploitation. © 2018 German Society for Plant Sciences and The Royal Botanical Society of the Netherlands.

  13. Germination of Ocotea pulchella (Nees) Mez (Lauraceae) seeds in laboratory and natural restinga environment conditions.

    PubMed

    Pires, L A; Cardoso, V J M; Joly, C A; Rodrigues, R R

    2009-08-01

    The germination response of Ocotea pulchella (Nees) Mez seeds to light, temperature, water level and pulp presence is introduced. The laboratory assays were carried out in germination chambers and thermal-gradient apparatus, whereas the field assays were performed in environments with distinct light, temperature and soil moisture conditions within a permanent parcel of Restinga forest of the Parque Estadual da Ilha do Cardoso, Cananéia, São Paulo. The seeds do not exhibit dormancy, they are non photoblastic, and a loss of viability in dry stored seeds can be related to a decrease in water content of the seed. The presence of the pulp and the flooded substratum influenced negatively the germination of O. pulchella seeds tested in the laboratory. Otherwise, light and temperature probably are not limiting factors of the germination of O. pulchella seeds in the natural environment of Restinga. The optimum temperature range for germination of Ocotea pulchella seeds was 20 to 32 degrees C, the minimum or base temperature estimated was 11 degrees C and the maximum ranged between 33 and 42 degrees C. The isotherms exhibited a sigmoidal pattern well described by the Weibull model in the sub-optimal temperature range. The germinability of O. pulchella seeds in the understorey, both in wet and dry soil, was higher than in gaps. Germination was not affected by fluctuations in soil moisture content in the understorey environment, whereas in gaps, germination was higher in wet soils. Thus, the germination of this species involves the interaction of two or more factors and it cannot be explained by a single factor.

  14. [Use of dental services by preschool children in Canela, Rio Grande do Sul State, Brazil].

    PubMed

    Kramer, Paulo Floriani; Ardenghi, Thiago Machado; Ferreira, Simone; Fischer, Laura de Almeida; Cardoso, Luciana; Feldens, Carlos Alberto

    2008-01-01

    The aim of this study was to assess the use of dental services and age at first dental visit in preschool children in Canela, Rio Grande do Sul State, Brazil. A representative sample of under-five children was surveyed on National Children's Vaccination Day. Children's parents completed questionnaires containing socio-demographic data and age at first dental visit. Data were analyzed using multiple logistic regression. 192 children were examined. 13.3% of the sample had already visited the dentist at least once, but only 4.3% had their first dental visit by one year of age. The number of children who had already visited a dentist increased with age. Girls showed higher odds of having visited a dentist (OR = 1.46; 95%CI: 1.01-2.1). Public health strategies are needed to determine the effectiveness of health promotion and improve the use of dental services by preschool children.

  15. The typification of Cordia flavescens Aubl., the transfer of Firensia Scop. from Cordia L. (Cordiaceae, Boraginales) to the synonymy of Ocotea Aubl. (Lauraceae), and the identity of the species of Firensia.

    PubMed

    Feuillet, Christian

    2013-01-01

    Firensia Scop. was based on Cordia flavescens Aubl., a species described and illustrated from a mixed collection that Scopoli never transferred to Firensia. The genus included three additional species formally named by Rafinesque. Currently the four species are placed in three different families and none retained the epithet accepted by Scopoli or given by Rafinesque for reason of priority. A lectotype is designated for Cordia flavescens that places Firensia in the synonymy of Ocotea (Lauraceae).

  16. The typification of Cordia flavescens Aubl., the transfer of Firensia Scop. from Cordia L. (Cordiaceae, Boraginales) to the synonymy of Ocotea Aubl. (Lauraceae), and the identity of the species of Firensia

    PubMed Central

    Feuillet, Christian

    2013-01-01

    Abstract Firensia Scop. was based on Cordia flavescens Aubl., a species described and illustrated from a mixed collection that Scopoli never transferred to Firensia. The genus included three additional species formally named by Rafinesque. Currently the four species are placed in three different families and none retained the epithet accepted by Scopoli or given by Rafinesque for reason of priority. A lectotype is designated for Cordia flavescens that places Firensia in the synonymy of Ocotea (Lauraceae). PMID:23805052

  17. Chemical Diversity, Biological Activity, and Genetic Aspects of Three Ocotea Species from the Amazon

    PubMed Central

    da Silva, Joyce Kelly; da Trindade, Rafaela; Moreira, Edith Cibelle; Maia, José Guilherme S.; Dosoky, Noura S.; Miller, Rebecca S.; Cseke, Leland J.; Setzer, William N.

    2017-01-01

    Ocotea species present economic importance and biological activities attributed to their essential oils (EOs) and extracts. For this reason, various strategies have been developed for their conservation. The chemical compositions of the essential oils and matK DNA sequences of O. caudata, O. cujumary, and O. caniculata were subjected to comparison with data from O. floribunda, O. veraguensis, and O. whitei, previously reported. The multivariate analysis of chemical composition classified the EOs into two main clusters. Group I was characterized by the presence of α-pinene (9.8–22.5%) and β-pinene (9.7–21.3%) and it includes O. caudata, O. whitei, and O. floribunda. In group II, the oils of O. cujumary and O. caniculata showed high similarity due amounts of β-caryophyllene (22.2% and 18.9%, respectively). The EO of O. veraguensis, rich in p-cymene (19.8%), showed minor similarity among all samples. The oils displayed promising antimicrobial and cytotoxic activities against Escherichia coli (minimum inhibitory concentration (MIC) < 19.5 µg·mL−1) and MCF-7 cells (median inhibitory concentration (IC50) ≅ 65.0 µg·mL−1), respectively. The analysis of matK gene displayed a good correlation with the main class of chemical compounds present in the EOs. However, the matK gene data did not show correlation with specific compounds. PMID:28524091

  18. 21 CFR 189.180 - Safrole.

    Code of Federal Regulations, 2012 CFR

    2012-04-01

    ...-methylenedioxy-benzene, C10H10O2. It is a natural constituent of the sassafras plant. Oil of sassafras is about... flavoring compounds. (b) Food containing any added safrole, oil of sassafras, isosafrole, or dihydrosafrole...

  19. 21 CFR 189.180 - Safrole.

    Code of Federal Regulations, 2013 CFR

    2013-04-01

    ...-methylenedioxy-benzene, C10H10O2. It is a natural constituent of the sassafras plant. Oil of sassafras is about... flavoring compounds. (b) Food containing any added safrole, oil of sassafras, isosafrole, or dihydrosafrole...

  20. Evaluation of the Allelopathic Potential of Leaf, Stem, and Root Extracts of Ocotea pulchella Nees et Mart.

    PubMed

    Candido, Lafayette P; Varela, Rosa M; Torres, Ascensión; Molinillo, José M G; Gualtieri, Sonia C J; Macías, Francisco A

    2016-08-01

    Despite the increase in recent decades in herbicide research on the potential of native plants, current knowledge is considered to be low. Very few studies have been carried out on the chemical profile or the biological activity of the Brazilian savanna (Cerrado) species. In the study reported here, the allelopathic activity of AcOEt and MeOH extracts of leaves, stems, and roots from Ocotea pulchella Nees was evaluated. The extracts were assayed on etiolated wheat coleoptiles. The AcOEt leaf extract was the most active and this was tested on standard target species (STS). Lycopersicon esculentum and Lactuca sativa were the most sensitive species in this test. A total of eleven compounds have been isolated and characterized. Compounds 1, 2, 4, and 6 have not been identified previously from O. pulchella and ocoteol (9) is reported for the first time in the literature. Eight compounds were tested on wheat coleoptile growth, and spathulenol, benzyl salicylate, and benzyl benzoate showed the highest activities. These compounds showed inhibitory activity on L. esculentum. The values obtained correspond to the activity exhibited by the extract and these compounds may therefore be responsible for the allelopathic activity shown by O. pulchella. © 2016 Wiley-VHCA AG, Zürich.

  1. Composition of the volatile fraction of Ocotea bofo Kunth (Lauraceae) calyces by GC-MS and NMR fingerprinting and its antimicrobial and antioxidant activity.

    PubMed

    Guerrini, Alessandra; Sacchetti, Gianni; Muzzoli, Mariavittoria; Moreno Rueda, Gabriela; Medici, Alessandro; Besco, Elena; Bruni, Renato

    2006-10-04

    The chemical composition of the essential oil obtained by steam distillation of the floral calyces of Ocotea bofo Kunth (Lauraceae) was studied by means of GC, GC-MS, and 1H, 13C, and bidimensional NMR (COSY, HSQC, HMBC). Twenty-five constituents were identified, and estragole (48.7%), alpha-phellandrene (19.6%) and sabinene (10.4%) were found to be the major components. Antimicrobial activity against six aerobic bacteria and five yeasts and antioxidant activity performed by photochemiluminescence (PCL), 1,1-diphenyl-2-picrylhydrazyl (DPPH), and beta-carotene bleaching assays are reported. The oil showed fair inhibiting properties against bacteria and a good inhibition against most yeasts. Its radical scavenging and chain-breaking antioxidant properties were comparable to or better than those provided by synthetic controls. Particular emphasis has been given to the use of NMR as a fast and reliable tool to discriminate O. bofo essential oil from other commercial anethole- and estragole-rich oils, namely, Illicium verum, Foeniculum vulgare, and Artemisia dracunculus.

  2. First report of the effect of Ocotea elegans essential oil on Rhipicephalus (Boophilus) microplus.

    PubMed

    Figueiredo, Amanda; Nascimento, Leonor M; Lopes, Louyse G; Giglioti, Rodrigo; Albuquerque, Ricardo D D G; Santos, Marcelo G; Falcão, Deborah Q; Nogueira, Jeane A P; Rocha, Leandro; Chagas, Ana Carolina S

    2018-03-15

    Rhipicephalus (Boophilus) microplus is responsible for reducing animal welfare, causing a drop in productive performance and transmitting hemoparasites. The main strategy of tick control is application of synthetic acaricides. However, parasite resistance to these compounds is a major concern. Therefore, the acaricidal and repellent in vitro effect of the Ocotea elegans essential oil on larvae and adult females of R. (B.) microplus were evaluated. The larval packet test (LPT), larval repellency test (RT) and adult immersion test (AIT) were performed. The essential oil was analyzed by gas chromatography (GC/FID) and the structure of the oil's major constituent (92.2% sesquirosefuran) was elucidated by nuclear magnetic resonance. In the AIT, efficacy higher than 90% was detected from the concentration 25 mg/mL upward. In both LPTs performed after 48 h, only the 100 mg/mL concentration resulted in mortalities above 70%. On the other hand, the essential oil caused an average of 95.8% repellency from 0.78 to 100 mg/mL. The LC 50 in the two LPT (48 h) tests were 59.68 and 25.59 mg/mL, respectively. The LC 50 and LC 90 in the AIT were 4.96 and 17.37 mg/mL, and in the RT they were 0.04 and 1.24 mg/mL respectively. We conclude that the essential oil of O. elegans leaves has a significant acaricidal effect on engorged females and on larval repellency of R. (B.) microplus ticks, and can be a promising alternative for the control of this ectoparasite. Copyright © 2018. Published by Elsevier B.V.

  3. 21 CFR 189.180 - Safrole.

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... constituent of the sassafras plant. Oil of sassafras is about 80 percent safrole. Isosafrole and dihydrosafrole are derivatives of safrole, and have been used as flavoring compounds. (b) Food containing any...

  4. Physiological and structural foliar characteristics of four central Pennsylvania barrens species in contrasting light regimes

    Treesearch

    B.D. Kloeppel; M.E. Kubiske; M.D. Abrams

    1991-01-01

    Four central Pennsylvania barrens species, black oak (Quercus velutina), chestnut oak (Quercus prinus), red maple (Acer rubrum), and sassafras (Sassafras albidum), in the sapling size range were tagged and monitored in juxtaposed understory and full sunlight conditions.

  5. Variation in manuka oil lure efficacy for capturing Xyleborus glabratus (Coleoptera: Curculionidae: Scholytinae), and Cubeb oil as an alternative attractant

    Treesearch

    James Hanula; Brian Sullivan; David Wakarchuk

    2013-01-01

    Redbay ambrosia beetle, Xyleborus glabratus Eichoff, is an exotic species to North America vectoring a deadly vascular wilt disease of redbay [Persea borbonia (L.) Spreng], swampbay [P. palustris (Raf.) Sarg.], avocado (P. americana Mill.), and sassafras [Sassafras albidum (...

  6. Yangambin, a lignan obtained from Ocotea duckei, differentiates putative PAF receptor subtypes in the gastrointestinal tract of rats.

    PubMed

    Jesus-Morais, C M; Assis, E F; Cordeiro, R S; Barbosa-Filho, J M; Lima, W T; Silva, Z L; Bozza, P T; Castro-Faria-Neto, H C

    2000-04-01

    We investigated the presence of PAF receptor subtypes in the tissues of the gastrointestinal tract, airways, blood vessels and in murine macrophages. For this purpose we have used a competitive PAF receptor antagonist, yangambin (YAN), extracted from the Brazilian plant "louro de cheiro" (Ocotea duckei Vattimo). Rat duodenum, jejunum, ileum, colon, stomach fundus, trachea and bronchia were removed and 1.5-2 cm muscle segments from those regions were mounted in a 10 ml organ bath with aerated physiological solution at 37 degrees C. PAF evoked a contraction of the rat jejunum, ileum, colon and stomach fundus. The contraction was slow and resistant to wash and was followed by desensitization to further doses of PAF. Contractions induced by PAF (10(-6) M) were inhibited by YAN (10(-7) to M-2 x 10(-5) M) and WEB 2086 (10(-6) m to M-5 M) in rat jejunum, ileum and colon but not in the stomach fundus. In the rat stomach fundus only WEB 2086 (5 x 10(-6) M) was able to block PAF-induced contraction. The contractions induced by acetylcholine, histamine, 5-hydroxytryptamine and vasopressin were not inhibited by prior administration of YAN. Yangambin also significantly inhibited PAF-induced vascular permeability in rat duodenum, jejunum, ileum, colon, and mesentery. Yangambin significantly inhibited PAF-induced lipid body formation in mice peritoneal macrophages. We suggest that YAN is a selective PAF antagonist which is able to discriminate putative PAF receptors subtypes present in the stomach fundus.

  7. Disjunct population of redbay ambrosia beetle and laurel wilt disease discovered in Mississippi

    Treesearch

    J.J. Riggins; M. Hughes; J.A. Smith; R. Chapin

    2011-01-01

    Laurel wilt is an aggressive, non-native vascular wilt disease of redbay trees (Persea borbonia), sassafras (Sassafras albidum), and other plants within the Lauraceae family. The laurel wilt pathogen, (Raffaelea lauricola), is vectored by the redbay ambrosia beetle (Xyleborus glabratus), which...

  8. Is California bay laurel a suitable host for the non-native redbay ambrosia beetle, vector of laurel wilt disease?

    USDA-ARS?s Scientific Manuscript database

    Laurel wilt is a deadly vascular disease of trees in the Lauraceae that kills healthy redbay (Persea borbonia), sassafras (Sassafras albidum), and other related hosts. The fungal pathogen (Raffaelea lauricola) and it vector, the redbay ambrosia beetle (Xyleborus glabratus) are native to Asia and ha...

  9. Polyamines, IAA and ABA during germination in two recalcitrant seeds: Araucaria angustifolia (Gymnosperm) and Ocotea odorifera (Angiosperm)

    PubMed Central

    Pieruzzi, Fernanda P.; Dias, Leonardo L. C.; Balbuena, Tiago S.; Santa-Catarina, Claudete; dos Santos, André L. W.; Floh, Eny I. S.

    2011-01-01

    Background and Aims Plant growth regulators play an important role in seed germination. However, much of the current knowledge about their function during seed germination was obtained using orthodox seeds as model systems, and there is a paucity of information about the role of plant growth regulators during germination of recalcitrant seeds. In the present work, two endangered woody species with recalcitrant seeds, Araucaria angustifolia (Gymnosperm) and Ocotea odorifera (Angiosperm), native to the Atlantic Rain Forest, Brazil, were used to study the mobilization of polyamines (PAs), indole-acetic acid (IAA) and abscisic acid (ABA) during seed germination. Methods Data were sampled from embryos of O. odorifera and embryos and megagametophytes of A. angustifolia throughout the germination process. Biochemical analyses were carried out in HPLC. Key Results During seed germination, an increase in the (Spd + Spm) : Put ratio was recorded in embryos in both species. An increase in IAA and PA levels was also observed during seed germination in both embryos, while ABA levels showed a decrease in O. odorifera and an increase in A. angustifolia embryos throughout the period studied. Conclusions The (Spd + Spm) : Put ratio could be used as a marker for germination completion. The increase in IAA levels, prior to germination, could be associated with variations in PA content. The ABA mobilization observed in the embryos could represent a greater resistance to this hormone in recalcitrant seeds, in comparison to orthodox seeds, opening a new perspective for studies on the effects of this regulator in recalcitrant seeds. The gymnosperm seed, though without a connective tissue between megagametophyte and embryo, seems to be able to maintain communication between the tissues, based on the likely transport of plant growth regulators. PMID:21685432

  10. Biological Reactive Intermediates (BRIs) Formed from Botanical Dietary Supplements

    PubMed Central

    Dietz, Birgit M.; Bolton, Judy L.

    2013-01-01

    The use of botanical dietary supplements is increasingly popular, due to their natural origin and the perceived assumption that they are safer than prescription drugs. While most botanical dietary supplements can be considered safe, a few contain compounds, which can be converted to reactive biological reactive intermediates (BRIs) causing toxicity. For example, sassafras oil contains safrole, which can be converted to a reactive carbocation forming genotoxic DNA adducts. Alternatively, some botanical dietary supplements contain stable BRIs such as simple Michael acceptors that react with chemosensor proteins such as Keap1 resulting in induction of protective detoxification enzymes. Examples include curcumin from turmeric, xanthohumol from hops, and Z-ligustilide from dang gui. Quinones (sassafras, kava, black cohosh), quinone methides (sassafras), and epoxides (pennyroyal oil) represent BRIs of intermediate reactivity, which could generate both genotoxic and/or chemopreventive effects. The biological targets of BRIs formed from botanical dietary supplements and their resulting toxic and/or chemopreventive effects are closely linked to the reactivity of BRIs as well as dose and time of exposure. PMID:20970412

  11. Forest Succession and Maternity Day roost selection by Myotis septentrionalis in a mesophytic hardwood forest

    USGS Publications Warehouse

    Silvis, Alexander; Ford, W. Mark; Eric R. Britzke,; Nathan R. Beane,; Joshua B. Johnson,

    2012-01-01

    Conservation of summer maternity roosts is considered critical for bat management in North America, yet many aspects of the physical and environmental factors that drive roost selection are poorly understood. We tracked 58 female northern bats (Myotis septentrionalis) to 105 roost trees of 21 species on the Fort Knox military reservation in north-central Kentucky during the summer of 2011. Sassafras (Sassafras albidum) was used as a day roost more than expected based on forest stand-level availability and accounted for 48.6% of all observed day roosts. Using logistic regression and an information theoretic approach, we were unable to reliably differentiate between sassafras and other roost species or between day roosts used during different maternity periods using models representative of individual tree metrics, site metrics, topographic location, or combinations of these factors. For northern bats, we suggest that day-roost selection is not a function of differences between individual tree species per se, but rather of forest successional patterns, stand and tree structure. Present successional trajectories may not provide this particular selected structure again without management intervention, thereby suggesting that resource managers take a relatively long retrospective view to manage current and future forest conditions for bats.

  12. A newly recognised Australian endemic species of Austrolecanium Gullan & Hodgson 1998 (Hemiptera: Coccidae) from Queensland.

    PubMed

    Lin, Yen-Po; Ding, Zheng Yee; Gullan, Penny J; Cook, Lyn G

    2017-05-26

    Austrolecanium cryptocaryae Lin & Cook sp. n. is described based on adult female morphology and DNA sequences from mitochondrial and nuclear loci. This Australian endemic species was found on the underside of leaves of Cryptocarya microneura (Lauraceae) in Queensland. All phylogenetic analyses of four independent DNA loci and a concatenated dataset show that A. cryptocaryae is monophyletic and closely related to A. sassafras Gullan & Hodgson, the type species of Austrolecanium Gullan & Hodgson. The adult female of A. cryptocaryae is described and illustrated and a table is provided of the characters that differ among adult females of the three species of Austrolecanium currently recognised (A. cappari (Froggatt), A. cryptocaryae sp. n. and A. sassafras).

  13. Evaluation of the Leishmanicidal Activity of Rutaceae and Lauraceae Ethanol Extracts on Golden Syrian Hamster (Mesocricetus auratus) Peritoneal Macrophages.

    PubMed

    Chávez Enciso, N A; Coy-Barrera, E D; Patiño, O J; Cuca, L E; Delgado, Gabriela

    2014-05-01

    Traditional medicine has provided a number of therapeutic solutions for the control of infectious agents, cancers, and other diseases. After screening a wide variety of Colombian plant extracts, we have identified promising antileishmanial activity in ethanol extracts from Ocotea macrophylla (Lauraceae) and Zanthoxyllum monophyllum (Rutaceae). In this study, we evaluated the in vitro activity of two ethanol extracts, one from Ocotea macrophylla and the other from Zanthoxyllum monophyllum and one alkaloid fraction of ethanol extract of Zanthoxyllum monophyllum, on peritoneal macrophages isolated from golden Syrian hamsters (Mesocricetus auratus) infected with Leishmania panamensis and Leishmania major promastigotes. All of the extracts studied displayed promising (≥2) selectivity indices (S/I), the most significant of which were for ethanol extract of Zanthoxyllum monophyllum against Leishmania panamensis (S/I=12) and alkaloid fraction of ethanol extract of Zanthoxyllum monophyllum against Leishmania major (S/I=11). These results support the use of ethanol extracts and alkaloid fractions isolated from Ocotea macrophylla and Zanthoxyllum monophyllum, respectively; as therapeutic options for cutaneous leishmaniasis.

  14. First report of laurel wilt, caused by Raffaelea lauricola, on sassafras (Sassafras albidum) in Alabama

    Treesearch

    C.A. Bates; Stephen Fraedrich; T.C. Harrington; R.S. Cameron; R.D. Menard; Susan Best

    2013-01-01

    Laurel wilt, caused by Raffaelea lauricola, a fungal symbiont of the redbay ambrosia beetle, Xyleborus glabratus, is responsible for extensive mortality of native redbays (Persea borbonia and P. Palustris) in the coastal plains of the southeastern United States. The wilt also affect the more...

  15. Effects of seedling size, El Niño drought, seedling density, and distance to nearest conspecific adult on 6-year survival of Ocotea whitei seedlings in Panamá.

    PubMed

    Gilbert, Gregory S; Harms, Kyle E; Hamill, David N; Hubbell, Stephen P

    2001-05-01

    We present an analysis of the long-term survival of two cohorts of seedlings of the tropical canopy tree Ocotea whitei (Lauraceae) on a 1-ha plot of mature, lowland moist forest on Barro Colorado Island, Panamá. In 1980, we counted an even-aged cohort of seedlings that germinated in 1979, then measured and tagged survivors in 1981. We also measured and tagged a second, smaller cohort of seedlings that germinated in 1981. We followed the subsequent survival of all seedlings through 1985. Seedling mortality was phenotypically, temporally, and spatially non-random. Important correlates of non-random mortality included: (1) seedling size and age, (2) an El Niño drought, and (3) biotic neighborhood. Larger and older seedlings survived better than smaller and younger seedlings, respectively, and the El Niño-related drought of 1982-1983 was associated with elevated mortality rates. Seedling density, which was strongly correlated with the proximity to the nearest conspecific adult, increased mortality. The observed mortality patterns suggest that processes consistent with the Janzen-Connell hypothesis operate during the recruitment phase of O. whitei population dynamics. However, the processes causing the observed density- and distance-dependent mortality may vary with factors such as total seed number, seedling size, and climatic variation, making it difficult to determine whether time-integrated seedling-to-adult spacing mechanisms other than self-thinning operate on a given plant population. After 6 years in the hectare studied, survivors remained densest and most numerous underneath the adult trees. We conclude that only long-term demographic data, collected at a variety of scales on a variety of species, will ultimately answer the question: do Janzen-Connell effects contribute substantially to structuring tropical forests?

  16. Significant genetic differentiation among populations of Anomalocardia brasiliana (Gmelin, 1791): A bivalve with planktonic larval dispersion

    PubMed Central

    2009-01-01

    Four Brazilian populations of Anomalocardia brasiliana were tested for mutual genetic homogeneity, using data from 123 sequences of the mtDNA cytochrome oxidase c subunit I gene. A total of 36 haplotypes were identified, those shared being H3 (Canela Island, Prainha and Acupe) and both H5 and H9 (Prainha and Acupe). Haplotype diversity values were high, except for the Camurupim population, whereas nucleotide values were low in all the populations, except for that of Acupe. Only the Prainha population showed a deviation from neutrality and the SSD test did not reject the demographic expansion hypothesis. Fst values showed that the Prainha and Acupe populations represent a single stock, whereas in both the Canela Island and Camurupim stocks, population structures are different and independent. The observed structure at Canela Island may be due to the geographic distance between this population and the remainder. The Camurupim population does not share any haplotype with the remaining populations in northeastern Brazil. The apparent isolation could be due to the rocky barrier located facing the mouth of the Mamanguape River. The results highlight the importance of wide-scale studies to identify and conserve local genetic diversity, especially where migration is restricted. PMID:21637701

  17. Chalk Point cooling tower project native vegetation study. Final report 1979

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Patterson, G.W.; Galloway, R.A.; Francis, B.A.

    1979-06-01

    The Potomac Electric Power Company generating station at Chalk Point, MD, utilizes brackish water in its natural draft cooling tower and, consequently, releases saline aerosol into the atmosphere. A research and monitoring project was established in 1974 to evaluate the effects of this drift on native perennial vegetation. Leaf samples have been collected form dogwood, Cornys florida, Virginia pine, Pinus virginiana, black locust, Robinia pseudoacacia, and sassafras, Sassafras albidum, located at 12 different sites in the vicinity of the power plant. Sampling was begun prior to the operation of the cooling tower, 1974, and continued through 1978. Complete results frommore » monthly monitoring of foliar chloride in the four native tree species is documented for May through September 1978. Results from salt spray experiments indicate chloride and sodium concentrations in the wood of dogwood trees increases with increased spraying levels.« less

  18. Patterns of Genetic Variation in Woody Plant Species in the Missouri Ozark Forest Ecosystem Project

    Treesearch

    Victoria L. Sork; Anthony Koop; Marie Ann de la Fuente; Paul Foster; Jay Raveill

    1997-01-01

    We quantified current patterns of genetic variation of three woody plant species—Carya tomentosa (Juglandaceae), Quercus alba (Fagaceae), and Sassafras albidum (Lauraceae)—distributed throughout the nine Missouri Ozark Forest Ecosystem Project (MOFEP) study sites and evaluated the data in light of the MOFEP...

  19. Cold tolerance and invasive potential of the redbay ambrosia beetle (Xyleborus glabratus) in the eastern United States

    Treesearch

    John P. Formby; John C. Rodgers; Frank H. Koch; Natraj Krishnan; Donald A. Duerr; John J. Riggins

    2017-01-01

    Native Lauraceae (e.g. sassafras, redbay) in the southeastern USA are being severely impacted by laurel wilt disease, which is caused by the pathogen Raffaelea lauricola T. C. Harr., Fraedrich and Aghayeva, and its symbiotic vector, the redbay ambrosia beetle (Xyleborus glabratus Eichhoff). Cold temperatures are currently the...

  20. Nitrogen Cycling and GHG Emissions of Natural and Managed Tropical Ecosystems at Mt. Kilimanjaro

    NASA Astrophysics Data System (ADS)

    Gutlein, A.; Ralf, K.; Gerschlauer, F.; Dannenmann, M.; Butterbach-Bahl, K.; Diaz-Pines, E.

    2016-12-01

    In a rapidly changing world understanding of natural ecosystems response to human perturbations such as land use and climate changes as well as habitat destruction is crucial with respect to sustainability of ecosystem services. This is particularily true for tropical forest ecosystems which have significant effects on the major biogeochemical cycles and global climate. Here we present a comprehensive dataset of nitrogen cycling and GHG emissions of natural and managed ecosystems along land use and climate gradients at Mt. Kilimanjaro, Tanzania including different forest ecosystems, homegardens, and coffee plantations. Soil N turnover rates were highest in the Ocotea forest and progressively decreased with decreasing annual rainfall and increasing land use intensity. Nitrogen production and immobilization rates positively correlated with soil organic C and total N concentrations as well as substrate availability of dissolved organic C and N, but correlated less with soil ammonium and nitrate concentrations. By using indicators of N retention and characteristics of soil nutrient status, we observed a grouping of faster, but tighter N cycling in the (semi-) natural savanna, Helychrysum and Ocotea forest. This contrasted with a more open N cycle in managed systems (homegarden and coffee plantation) where N was more prone to leaching or gaseous losses due to high nitrate production rates. The partly disturbed lower montane forest ranged in between these two groups. These finding could be supported by differences in natural 15N abundance of litter and soil across all sites. Comparing GHG emissions at the land use gradient showed, that with increasing intensification (lower montane forest - homegarden - coffee plantation) N2O emissions increased but at the same time the soil sink for atmospheric CH4 decreased. GHG emission measurements at the climate gradient (savanna, lower montane, Ocotea and Podocarpus forest, Helychrysum) revealed that differences in soil moisture

  1. Pennypack Watershed, Pennsylvania. Expanded Flood Plain Information.

    DTIC Science & Technology

    1980-09-01

    080 z ,30 o ,560 1,000 5 So 2W 3 00 so o90 220 1.94 1.270 1.070 490 350 4 480 50 960 200 1930 1.220 970 490 290 5 2 0 90 IO 150 1,000 680 470...include skunk or opossum. younger oaks and pines, sassafras, laurel, blueberry Mowed fields are grasslands that are periodically and huckleberry. Gound

  2. Hydrocarbon- and rubber-producing crops: evaluation of 100 US plant species

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Buchanan, R.T.; Cull, I.M., Otey, F.H.; Russell, C.R.

    1978-01-01

    Agricultural production of rubber and other hydrocarbons in the United States may be compatible with increased food and fiber production if entire plants are harvested and processed for fiber, protein, and carbohydrate as well. Procedures and criteria have been established for the preliminary evaluation of plant species as potential multi-use hydrocarbon-producing crops. Previously, 106 species representing 44 families and 81 genera were evaluated. Now an additional 100 species respresenting 13 additional families and 60 additional genera have been evaluated, and some of these species also offer promise as future crops. Several Labiatae are high in natural rubber (NR) content: Pycnanthemummore » incanum (Mountain Mint) and Teucrium canadense (American Germander) were evaluated as promising species. Three Compositae, Cacalia atriplicifolia (Pale Indian-Plant), Solidago graminifolia (Grass-leafed Golden-rod, and Solidago rigida (Stiff Golden-rod) were also evaluated as promising species for NR. Campanuala americana (Tall Bellflower, Campanulaceae) has potential as a source of both oil and NR. Euphorbia dentata (Euphorbiaceae) does not produce NR but is very high in protein and oil contents. Sassafras albudim (Sassafras, Lauraceae) is of interest for its rapid growth rate in combination with a high oil content. A few other species offer some promise.« less

  3. Cultural Resources Assessment of the Horn Lake Creek and Tributaries Project, DeSoto County, Mississippi

    DTIC Science & Technology

    1988-01-01

    ry, persimmon, sassafras, and winged elm in the undorstory. Again, a wide range of shrubs, vines, and herbs is pro5-nt. Plant resources are thus...the most important source of meat, followed by fish, turkey, and a wide variety of small animals and ducks. Remains from edible plants consist of...and the more famous Walls Phase, A.D. 1450-1600. Corn agriculture supplemented by various other crops, wild plants, hunting, and fishing provided the

  4. Molecular identification, phylogeny and geographic distribution of Brazilian mangrove oysters (Crassostrea)

    PubMed Central

    2010-01-01

    Oysters (Ostreidae) manifest a high degree of phenotypic plasticity, whereby morphology is of limited value for species identification and taxonomy. By using molecular data, the aim was to genetically characterize the species of Crassostrea occurring along the Brazilian coast, and phylogenetically relate these to other Crassostrea from different parts of the world. Sequencing of the partial cytochrome oxidase c subunit I gene (COI), revealed a total of three species of Crassostrea at 16 locations along the Brazilian coast. C. gasar was found from Curuçá (Pará state) to Santos (São Paulo state), and C. rhizophorae from Fortim (Ceará state) to Florianópolis (Santa Catarina state), although small individuals of the latter species were also found at Ajuruteua beach (municipality of Bragança, Pará state). An unidentified Crassostrea species was found only on Canela Island, Bragança. Crassostrea gasar and C. rhizophorae grouped with C. virginica, thereby forming a monophyletic Atlantic group, whereas Crassostrea sp. from Canela Island was shown to be more similar to Indo-Pacific oysters, and either arrived in the Atlantic Ocean before the convergence of the Isthmus of Panama or was accidentally brought to Brazil by ship. PMID:21637433

  5. Nutritional ecology of the formosan subterranean termite (Isoptera: Rhinotermitidae): feeding response to commercial wood species.

    PubMed

    Morales-Ramos, J A; Rojas, M G

    2001-04-01

    The feeding preferences of the Formosan subterranean termite, Coptotermes formosanus Shiraki, were tested in three separate experiments on 28 different wood species. Experiment 1 was a multiple-choice test designed to test relative preferences among 24 wood species commercially available in New Orleans, LA. Experiment 2 was a similar study designed to test relative preferences among 21 wood species shown or reported to be unpalatable to the Formosan subterranean termite. Experiment 3 was a no-choice test to examine the feeding deterrence of the 10 least preferred wood species. Preference was determined by consumption rates. Birch (Betula alleghaniensis Britton), red gum (Liquidambar styraciflua L.), Parana pine [Araucaria angustifolia (Bert.) 1, sugar maple (Acer saccharum Marsh.), pecan (Carya illinoensis Wangenh.), and northern red oak (Quercus rubra L.) were the most preferred species by C. formosanus in order of consumption rate. All of these species were significantly more preferred than southern yellow pine (Pinus taeda L.), widely used for monitoring. Sinker cypress [ = old growth bald cypress, Taxodium distichum (L.)], western red cedar (Thuja plicata Donn), Alaskan yellow cedar (Chamaecyparis nootkatensis D. Don), eastern red cedar (Juniperus virginiana L.), sassafras [Sassafras albidum (Nutt.)], Spanish cedar (Cedrella odorata L.), Honduras mahogany (Swietenia macrophyla King), Indian rosewood (Dalbergia latifolia Roxb.), Honduras rosewood (D. stevensonii Standl.), and morado (Machaerium sp.) induced significant feeding deterrence and mortality to C. formosanus. The last eight species produced 100% mortality after 3 mo.

  6. Review of Scientific Evidence of Medicinal Convoy Plants in Traditional Persian Medicine

    PubMed Central

    Sadati, Seyede Nargess; Ardekani, Mohammad Reza Shams; Ebadi, Nastaran; Yakhchali, Maryam; Dana, Azadeh Raees; Masoomi, Fatemeh; Khanavi, Mahnaz; Ramezany, Farid

    2016-01-01

    One concept used in traditional Persian medicine (TPM) for multidrug therapy is that of the convoy drug (Mobadregh). According to TPM texts, convoy drugs are substances (or drugs), which facilitate the access of drugs or foods to the whole body or to specific organs. This study reviewed some convoy drugs presented in TPM, their biological effects, and their probable interactions with main drugs, considering the increased absorption through inhibition of P-glycoprotein (P-gp) efflux function, bioavailability-enhancing effects, and decreased metabolism of the main drug using electronic databases including PubMed, Scopus, ScienceDirect, and Google Scholar in November and December, 2013. Recent studies have proven the beneficial effects of Crocus sativus L. (saffron) and camphor on the heart and brain, the cerebral therapeutic effects of Asarum europaeum (hazelwort), the hepatoprotective effects of Cichorium intybus (chicory), and Apium graveolens (celery) seeds, and the diuretic effects of Cinnamomum zeylanicum (cinnamon), and Cucumis melo (melon) seeds. The effects of vinegar in targeting the liver and brain have also been demonstrated. An evaluation of the results demonstrated that the suggested convoy drugs, including Piper nigrum (black pepper), Piper longum (long pepper), red wine, Camellia sinensis (tea), hazelwort, Mentha longifolia (pennyroyal), Anethum graveolens (dill), Foeniculum vulgare (fennel), cinnamon, and Sassafras albidum (sassafras) can increase the bioavailability of coadministered drugs by inhibition of P-gp or cytochrome P450s (CYP450s) or both of them. This evidence could be a good basis for the use of these agents as convoys in TPM. PMID:27041871

  7. Use of remote sensing in agriculture

    NASA Technical Reports Server (NTRS)

    Pettry, D. E.; Powell, N. L.; Newhouse, M. E.

    1974-01-01

    Remote sensing studies in Virginia and Chesapeake Bay areas to investigate soil and plant conditions via remote sensing technology are reported ant the results given. Remote sensing techniques and interactions are also discussed. Specific studies on the effects of soil moisture and organic matter on energy reflection of extensively occurring Sassafras soils are discussed. Greenhouse and field studies investigating the effects of chlorophyll content of Irish potatoes on infrared reflection are presented. Selected ground truth and environmental monitoring data are shown in summary form. Practical demonstrations of remote sensing technology in agriculture are depicted and future use areas are delineated.

  8. The Role of the Y-Located TSPY Gene in Prostatic Oncogenesis

    DTIC Science & Technology

    2005-02-01

    2000). Canela N , Rodriguez-Vilarrupla A, Estanyol JM, Diaz Cytogenet Cell Genet 91:67-71 (2000). Lau Y -FC, Chou PM, Iezzoni JC, Alonzo JA, K6mlives C...T AD Award Number: DAMD17-03-1-0081 TITLE: The Role of the Y -Located TSPY Gene in Prostatic Oncogenesis PRINCIPAL INVESTIGATOR: Yun-Fai Chris Lau...NUMBERS The Role of the Y -Located TSPY Gene in Prostatic DAMD17-03-1-0081 Oncogenesis 6. AUTHOR(S) Yun-Fai Chris Lau, Ph.D. 7. PERFORMING ORGANIZA

  9. Illuminating cancer health disparities using ethnogenetic layering (EL) and phenotype segregation network analysis (PSNA).

    PubMed

    Jackson, Fatimah L C

    2006-01-01

    Resolving cancer health disparities continues to befuddle simplistic racial models. The racial groups alluded to in biomedicine, public health, and epidemiology are often profoundly substructured. EL and PSNA are computational assisted techniques that focus on microethnic group (MEG) substructure. Geographical variations in cancer may be due to differences in MEG ancestry or similar environmental exposures to a recognized carcinogen. Examples include breast and prostate cancers in the Chesapeake Bay region and Bight of Biafra biological ancestry, hypertension and stroke in the Carolina Coast region and Central African biological ancestry, and pancreatic cancer in the Mississippi Delta region and dietary/medicinal exposure to safrol from Sassafras albidum.

  10. North American Lauraceae: terpenoid emissions, relative attraction and boring preferences of redbay ambrosia beetle, Xyleborus glabratus (coleoptera: curculionidae: scolytinae).

    PubMed

    Kendra, Paul E; Montgomery, Wayne S; Niogret, Jerome; Pruett, Grechen E; Mayfield, Albert E; MacKenzie, Martin; Deyrup, Mark A; Bauchan, Gary R; Ploetz, Randy C; Epsky, Nancy D

    2014-01-01

    The invasive redbay ambrosia beetle, Xyleborus glabratus, is the primary vector of Raffaelea lauricola, a symbiotic fungus and the etiologic agent of laurel wilt. This lethal disease has caused severe mortality of redbay (Persea borbonia) and swampbay (P. palustris) trees in the southeastern USA, threatens avocado (P. americana) production in Florida, and has potential to impact additional New World species. To date, all North American hosts of X. glabratus and suscepts of laurel wilt are members of the family Lauraceae. This comparative study combined field tests and laboratory bioassays to evaluate attraction and boring preferences of female X. glabratus using freshly-cut bolts from nine species of Lauraceae: avocado (one cultivar of each botanical race), redbay, swampbay, silkbay (Persea humilis), California bay laurel (Umbellularia californica), sassafras (Sassafras albidum), northern spicebush (Lindera benzoin), camphor tree (Cinnamomum camphora), and lancewood (Nectandra coriacea). In addition, volatile collections and gas chromatography-mass spectroscopy (GC-MS) were conducted to quantify terpenoid emissions from test bolts, and electroantennography (EAG) was performed to measure olfactory responses of X. glabratus to terpenoids identified by GC-MS. Significant differences were observed among treatments in both field and laboratory tests. Silkbay and camphor tree attracted the highest numbers of the beetle in the field, and lancewood and spicebush the lowest, whereas boring activity was greatest on silkbay, bay laurel, swampbay, and redbay, and lowest on lancewood, spicebush, and camphor tree. The Guatemalan cultivar of avocado was more attractive than those of the other races, but boring response among the three was equivalent. The results suggest that camphor tree may contain a chemical deterrent to boring, and that different cues are associated with host location and host acceptance. Emissions of α-cubebene, α-copaene, α-humulene, and calamenene were

  11. North American Lauraceae: Terpenoid Emissions, Relative Attraction and Boring Preferences of Redbay Ambrosia Beetle, Xyleborus glabratus (Coleoptera: Curculionidae: Scolytinae)

    PubMed Central

    Kendra, Paul E.; Montgomery, Wayne S.; Niogret, Jerome; Pruett, Grechen E.; Mayfield, Albert E.; MacKenzie, Martin; Deyrup, Mark A.; Bauchan, Gary R.; Ploetz, Randy C.; Epsky, Nancy D.

    2014-01-01

    The invasive redbay ambrosia beetle, Xyleborus glabratus, is the primary vector of Raffaelea lauricola, a symbiotic fungus and the etiologic agent of laurel wilt. This lethal disease has caused severe mortality of redbay (Persea borbonia) and swampbay (P. palustris) trees in the southeastern USA, threatens avocado (P. americana) production in Florida, and has potential to impact additional New World species. To date, all North American hosts of X. glabratus and suscepts of laurel wilt are members of the family Lauraceae. This comparative study combined field tests and laboratory bioassays to evaluate attraction and boring preferences of female X. glabratus using freshly-cut bolts from nine species of Lauraceae: avocado (one cultivar of each botanical race), redbay, swampbay, silkbay (Persea humilis), California bay laurel (Umbellularia californica), sassafras (Sassafras albidum), northern spicebush (Lindera benzoin), camphor tree (Cinnamomum camphora), and lancewood (Nectandra coriacea). In addition, volatile collections and gas chromatography-mass spectroscopy (GC-MS) were conducted to quantify terpenoid emissions from test bolts, and electroantennography (EAG) was performed to measure olfactory responses of X. glabratus to terpenoids identified by GC-MS. Significant differences were observed among treatments in both field and laboratory tests. Silkbay and camphor tree attracted the highest numbers of the beetle in the field, and lancewood and spicebush the lowest, whereas boring activity was greatest on silkbay, bay laurel, swampbay, and redbay, and lowest on lancewood, spicebush, and camphor tree. The Guatemalan cultivar of avocado was more attractive than those of the other races, but boring response among the three was equivalent. The results suggest that camphor tree may contain a chemical deterrent to boring, and that different cues are associated with host location and host acceptance. Emissions of α-cubebene, α-copaene, α-humulene, and calamenene were

  12. Phyllosphere Metaproteomes of Trees from the Brazilian Atlantic Forest Show High Levels of Functional Redundancy.

    PubMed

    Lambais, M R; Barrera, S E; Santos, E C; Crowley, D E; Jumpponen, A

    2017-01-01

    The phyllosphere of the Brazilian Atlantic Forest has been estimated to contain several million bacterial species that are associated with approximately 20000 plant species. Despite the high bacterial diversity in the phyllosphere, the function of these microorganisms and the mechanisms driving their community assembly are largely unknown. In this study, we characterized the bacterial communities in the phyllospheres of four tree species of the Atlantic Forest (Mollinedia schottiana, Ocotea dispersa, Ocotea teleiandra, and Tabebuia serratifolia) and their metaproteomes to examine the basic protein functional groups expressed in the phyllosphere. Bacterial community analyses using 16S rRNA gene sequencing confirmed prior observations that plant species harbor distinct bacterial communities and that plants of the same taxon have more similar communities than more distantly related taxa. Using LC-ESI-Q-TOF, we identified 216 nonredundant proteins, based on 3503 peptide mass spectra. Most protein families were shared among the phyllosphere communities, suggesting functional redundancy despite differences in the species compositions of the bacterial communities. Proteins involved in glycolysis and anaerobic carbohydrate metabolism, solute transport, protein metabolism, cell motility, stress and antioxidant responses, nitrogen metabolism, and iron homeostasis were among the most frequently detected. In contrast to prior studies on crop plants and Arabidopsis, a low abundance of OTUs related to Methylobacterium and no proteins associated with the metabolism of one-carbon molecules were detected in the phyllospheres of the tree species studied here. Our data suggest that even though the phyllosphere bacterial communities of different tree species are phylogenetically diverse, their metaproteomes are functionally convergent with respect to traits required for survival on leaf surfaces.

  13. Decadal morphological response of an ebb-tidal delta and down-drift beach to artificial breaching and inlet stabilisation

    NASA Astrophysics Data System (ADS)

    Garel, E.; Sousa, C.; Ferreira, Ó.; Morales, J. A.

    2014-07-01

    The morphodynamic response of a mixed-energy ebb-tidal delta (Guadiana estuary, southern Portugal) and its down-drift barrier island (Canela Island) to channel relocation and stabilisation by jetties is examined using a series of sequential bathymetric maps and vertical aerial photographs spanning five decades. Morphological analysis indicates that the ebb delta is in an immature state, characterised by weak sediment bypassing. Landward-migrating shoals on the swash platform have been produced by the jetty-induced artificial bank-breaching and by the collapse of the eastern portion of the delta. The welding of these shoals has largely controlled the evolution of the coast, with local accretion and erosion lasting for years, and large amounts of regional accretion occurring over decades due to sand accumulation against jetties located further down-drift. These observations provide insights into the potential response of a coast to very large, locally concentrated sand nourishment in the form of shoals. The main effects of the jetties on the coast are observed at the centre of Canela Island, with the production of an erosion hot-spot associated with a temporally persistent and divergent longshore transport providing sand to the adjacent areas. Significant accretion is anticipated for the next decade along the entire island due to the ongoing attachment of the presently observed shoals. After the depletion of this sediment source, and in the context of weak sediment bypassing, the most severe down-drift erosion induced by the jetties is predicted to occur some decades after their construction. This study demonstrates that the geomorphic response of an ebb-tidal delta to jetty construction must be considered at multiple temporal and spatial scales when assessing the impacts of jetties on the down-drift coast.

  14. Fungal Planet description sheets: 371-399.

    PubMed

    Crous, P W; Wingfield, M J; Le Roux, J J; Richardson, D M; Strasberg, D; Shivas, R G; Alvarado, P; Edwards, J; Moreno, G; Sharma, R; Sonawane, M S; Tan, Y P; Altés, A; Barasubiye, T; Barnes, C W; Blanchette, R A; Boertmann, D; Bogo, A; Carlavilla, J R; Cheewangkoon, R; Daniel, R; de Beer, Z W; de Jesús Yáñez-Morales, M; Duong, T A; Fernández-Vicente, J; Geering, A D W; Guest, D I; Held, B W; Heykoop, M; Hubka, V; Ismail, A M; Kajale, S C; Khemmuk, W; Kolařík, M; Kurli, R; Lebeuf, R; Lévesque, C A; Lombard, L; Magista, D; Manjón, J L; Marincowitz, S; Mohedano, J M; Nováková, A; Oberlies, N H; Otto, E C; Paguigan, N D; Pascoe, I G; Pérez-Butrón, J L; Perrone, G; Rahi, P; Raja, H A; Rintoul, T; Sanhueza, R M V; Scarlett, K; Shouche, Y S; Shuttleworth, L A; Taylor, P W J; Thorn, R G; Vawdrey, L L; Solano-Vidal, R; Voitk, A; Wong, P T W; Wood, A R; Zamora, J C; Groenewald, J Z

    2015-12-01

    Syzygium jambos (incl. Strelitzianaceae fam. nov.) and Pseudobeltrania ocoteae from Ocotea obtusata (Beltraniaceae emend.). Morphological and culture characteristics along with ITS DNA barcodes are provided for all taxa.

  15. Soil microbial metabolic quotient (qCO2) of twelve ecosystems of Mt. Kilimanjaro

    NASA Astrophysics Data System (ADS)

    Pabst, Holger; Gerschlauer, Friederike; Kiese, Ralf; Kuzyakov, Yakov

    2014-05-01

    Soil organic carbon, microbial biomass carbon (MBC) and the metabolic quotient qCO2 - as sensitive and important parameters for soil fertility and C turnover - are strongly affected by land-use changes all over the world. These effects are particularly distinct upon conversion of natural to agricultural ecosystems due to very fast carbon (C) and nutrient cycles and high vulnerability, especially in the tropics. In this study, we used an elevational gradient on Mt. Kilimanjaro to investigate the effects of land-use change and elevation on Corg, MBC and qCO2. Down to a soil depth of 18 cm we compared 4 natural (Helichrysum, Erica forest, Podocarpus forest, Ocotea forest), 5 seminatural (disturbed Podocarpus forest, disturbed Ocotea forest, lower montane forest, grassland, savannah), 1 sustainably used (homegarden) and 2 intensively used ecosystems (coffee plantation, maize field) on an elevation gradient from 950 to 3880 m a.s.l.. Using an incubation device, soil CO2-efflux of 18 cm deep soil cores was measured under field moist conditions and mean annual temperature. MBC to Corg ratios varied between 0.7 and 2.3%. qCO2 increased with magnitude of the disturbance, albeit this effect decreased with elevation. Following the annual precipitation of the ecosystems, both, Corg and MBC showed a hum-shaped distribution with elevation, whereas their maxima were between 2500 and 3000 m a.s.l.. Additionaly, Corg and MBC contents were significantly reduced in intensively used agricultural systems. We conclude that the soil microbial biomass and its activity in Mt. Kilimanjaro ecosystems are strongly altered by land-use. This effect is more distinct in lower than in higher elevated ecosystems and strongly dependent on the magnitude of disturbance.

  16. Relation of Nickel Concentrations in Tree Rings to Groundwater Contamination

    NASA Astrophysics Data System (ADS)

    Yanosky, Thomas M.; Vroblesky, Don A.

    1992-08-01

    Increment cores were collected from trees growing at two sites where groundwater is contaminated by nickel. Proton-induced X ray emission spectroscopy was used to determine the nickel concentrations in selected individual rings and in parts of individual rings. Ring nickel concentrations were interpreted on the basis of recent concentrations of nickel in aquifers, historical information about site use activities, and model simulations of groundwater flow. Nickel concentrations in rings increased during years of site use but not in trees outside the contaminated aquifers. Consequently, it was concluded that trees may preserve in their rings an annual record of nickel contamination in groundwater. Tulip trees and oaks contained higher concentrations of nickel than did sassafras, sweet gum, or black cherry. No evidence was found that nickel accumulates consistently within parts of individual rings or that nickel is translocated across ring boundaries.

  17. Relation of nickel concentrations in tree rings to groundwater contamination

    USGS Publications Warehouse

    Yanosky, Thomas M.; Vroblesky, Don A.

    1992-01-01

    Increment cores were collected from trees growing at two sites where groundwater is contaminated by nickel. Proton-induced X ray emission spectroscopy was used to determine the nickel concentrations in selected individual rings and in parts of individual rings. Ring nickel concentrations were interpreted on the basis of recent concentrations of nickel in aquifers, historical information about site use activities, and model simulations of groundwater flow. Nickel concentrations in rings increased during years of site use but not in trees outside the contaminated aquifers. Consequently, it was concluded that trees may preserve in their rings an annual record of nickel contamination in groundwater. Tulip trees and oaks contained higher concentrations of nickel than did sassafras, sweet gum, or black cherry. No evidence was found that nickel accumulates consistently within parts of individual rings or that nickel is translocated across ring boundaries.

  18. Progression and Impact of Laurel Wilt Disease within Redbay and Sassafras Populations in Southeast Georgia

    Treesearch

    R. Scott Cameron; James Hanula; Stephen Fraedrich; Chip Bates

    2015-01-01

    Laurel wilt disease (LWD), caused by the fungus Raffaelea lauricola and transmitted by Xyleborus glabratus (Redbay Ambrosia Beetle [RAB]), has killed millions of Persea borbonia (Redbay) trees throughout the southeastern Coastal Plain. Laurel wilt also has been...

  19. Effects of drought on leaf gas exchange in an eastern broadleaf deciduous forest

    NASA Astrophysics Data System (ADS)

    Roman, D. T.; Brzostek, E. R.; Dragoni, D.; Rahman, A. F.; Novick, K. A.; Phillips, R.

    2013-12-01

    Understanding plant physiological adaptations to drought is critical for predicting changes in ecosystem productivity that result from climate variability and future climate change. From 2011-2013, southern Indiana experienced a late growing season drought in 2011, a severe early season drought in 2012, and a wet growing season in 2013 characterized by an absence of water stress with frequent precipitation and milder temperatures. The 2012 drought was unique due to the severity and early onset drought conditions (compared to the more frequent late season drought) and was characterized by a Palmer Drought severity index below -4 and precipitation totals from May - July that were 70% less than the long-term (2000 - 2010) mean. During the 2012 drought, an 11% decline in net ecosystem productivity relative to the long-term mean was observed at the AmeriFlux tower in Morgan Monroe State Forest despite a growing season that started ~25 days earlier. Thus, the objective of this study is to evaluate species-specific contributions to the canopy-scale response to inter-annual variability in water stress. We investigated differences between tree species in their response to climate variability using weekly leaf gas exchange and leaf water potential measurements during the growing seasons of 2011-2013. We used this unique dataset, collected at the top of the canopy with a 25 m boom lift, to evaluate changes in leaf water status and maximum assimilation capacity in the drought versus non-drought years. The leaf-level physiology of oak (Quercus) species appears to be less sensitive to drought than other species (tulip poplar [Liriodendron tulipifera], sassafras [Sassafras albidum] and sugar maple [Acer saccharum]). Preliminary data shows mean canopy leaf water potential for oaks was 30.5% more negative in May-July 2012 versus the same time period in 2013. During these same periods the rate of C assimilation in oaks was reduced by only 3%, whereas other species were reduced by

  20. Digging up food: excavation stone tool use by wild capuchin monkeys.

    PubMed

    Falótico, Tiago; Siqueira, José O; Ottoni, Eduardo B

    2017-07-24

    Capuchin monkeys at Serra da Capivara National Park (SCNP) usually forage on the ground for roots and fossorial arthropods, digging primarily with their hands but also using stone tools to loosen the soil and aid the digging process. Here we describe the stone tools used for digging by two groups of capuchins on SCNP. Both groups used tools while digging three main food resources: Thiloa glaucocarpa tubers, Ocotea sp roots, and trapdoor spiders. One explanation for the occurrence of tool use in primates is the "necessity hypothesis", which states that the main function of tool use is to obtain fallback food. We tested for this, but only found a positive correlation between plant food availability and the frequency of stone tools' use. Thus, our data do not support the fallback food hypothesis for the use of tools to access burrowed resources.

  1. Ideology and wildlands management: The case of Rondeau Provincial Park, Ontario

    NASA Astrophysics Data System (ADS)

    Mann, D. L.; Nelson, J. G.

    1980-03-01

    This is a critical examination of some of the basic concepts that have guided management of parks and related reserves, often termed wildlands. Study is focussed on Rondeau Provincial Park, Ontario, and on concepts such as wilderness, primeval forest, and the Carolinian forest. Deer culling and other management policies and practices have been based upon the idea that the highly valued sassafras, tulip, and other species of the Carolinian forest are decreasing due to browsing. Field mapping and analysis of historic vegetation records indicate that this trend is not in fact occurring. Historic research also reveals difficulties in defining the Carolinian or other perceived types of forest for management purposes. A major reassessment of ideology and management policy and practice seem to be required in Rondeau and other wildlands. Vague or general concepts such as wilderness or preservation should be strongly complemented and supported by more precise statements of objectives, a learning attitude, and experimentation and research. As a result of the technical uncertainties and value judgments frequently involved, management should also be based upon the expressed preferences and continuing involvement of citizens.

  2. Avian Influenza Virus (H11N9) in Migratory Shorebirds Wintering in the Amazon Region, Brazil

    PubMed Central

    de Araujo, Jansen; de Azevedo Júnior, Severino M.; Gaidet, Nicolas; Hurtado, Renata F.; Walker, David; Thomazelli, Luciano M.; Ometto, Tatiana; Seixas, Marina M. M.; Rodrigues, Roberta; Galindo, Daniele B.; da Silva, Adriana C. S.; Rodrigues, Arlinéa M. M.; Bomfim, Leonardo L.; Mota, Marcelo A.; Larrazábal, Maria E.; Branco, Joaquim O.; Serafini, Patricia; Neto, Isaac S.; Franks, John; Webby, Richard J.; Webster, Robert G.; Durigon, Edison L.

    2014-01-01

    Aquatic birds are the natural reservoir for avian influenza viruses (AIV). Habitats in Brazil provide stopover and wintering sites for water birds that migrate between North and South America. The current study was conducted to elucidate the possibility of the transport of influenza A viruses by birds that migrate annually between the Northern and Southern Hemispheres. In total, 556 orotracheal/cloacal swab samples were collected for influenza A virus screening using real-time RT-PCR (rRT-PCR). The influenza A virus-positive samples were subjected to viral isolation. Four samples were positive for the influenza A matrix gene by rRT-PCR. From these samples, three viruses were isolated, sequenced and characterized. All positive samples originated from a single bird species, the ruddy turnstone (Arenaria interpres), that was caught in the Amazon region at Caeté Bay, Northeast Pará, at Ilha de Canelas. To our knowledge, this is the first isolation of H11N9 in the ruddy turnstone in South America. PMID:25329399

  3. Determining fate and transport parameters for nitroglycerine, 2,4-dinitrotoluine, and nitroguanidine in soils

    NASA Astrophysics Data System (ADS)

    Gosch, D. L.; Dontsova, K.; Chorover, J.; Ferré, T.; Taylor, S.

    2010-12-01

    During military operations, a small fraction of propellant mass is not consumed during firing and is deposited onto the ground surface (Jenkins et al., 2006). Soluble propellant constituents can be released from particulate residues into the environment. Propellant constituents of interest for this study are nitroglycerine (NG), 2,4-dinitrotoluine (2,4-DNT), 2,6-dinitrotoluine (2,6-DNT), and nitroguanidine (NQ). The goal of this work is to determine fate and transport parameters for these constituents in three soils that represent a range of geographic locations and soil properties. This supports a companion study that looks at dissolution of NG, 2,4-DNT, 2,6-DNT, and NQ from fired and unfired solid propellant formulations and their transport in soils. The three soils selected for the study are Catlin silt loam (fine-silty, mixed, mesic, superactive Oxyaquic Argiudoll), Plymouth sandy loam (mesic, coated Typic Quartzipsamment), and Sassafras loam (fine loamy, siliceous, mesic Typic Hapudult). Two of these soils, Plymouth sandy loam and Sassafras loam, were collected on military installations. Linear adsorption coefficients and transformation rates of propellant constituents were determined in batch kinetic experiments. Soils were mixed with propellant constituent solutions (2 mg L-1) at 4:1 solution/soil mass ratio and equilibrated for 0, 1, 2, 6, 12, 24, 48, and 120 hr at which time samples were centrifuged and supernatant solutions were analyzed for target compounds by high performance liquid chromatography (HPLC) using U.S. EPA Method 8330b for NG, 2,4-DNT, and 2,6-DNT, and Walsh (1989) method for NQ. Adsorption and transformation of propellant constituents were determined from the decrease in solution concentration of these compounds. It was determined that all studied compounds were subjected to sorption by the solid phase and degradation. Catlin soil, with finer texture and high organic matter content, influenced solution concentration of NG, 2,4-DNT, 2,6-DNT

  4. Naturally occurring compounds affect glutamatergic neurotransmission in rat brain.

    PubMed

    Martini, Lucia Helena; Jung, Fernanda; Soares, Felix Antunes; Rotta, Liane Nanci; Vendite, Deusa Aparecida; Frizzo, Marcos Emilio dos Santos; Yunes, Rosendo A; Calixto, João Batista; Wofchuk, Susana; Souza, Diogo O

    2007-11-01

    Natural products, including those derived from plants, have largely contributed to the development of therapeutic drugs. Glutamate is the main excitatory neurotransmitter in the central nervous system and it is also considered a nociceptive neurotransmitter, by acting on peripheral nervous system. For this reason, in this study we investigated the effects of the hydroalcoholic extracts from Drymis winteri (polygodial and drimanial), Phyllanthus (rutin and quercetine), Jathopha elliptica (jatrophone), Hedyosmum brasiliense (13HDS), Ocotea suaveolens (Tormentic acid), Protium kleinii (alphabeta-amyrin), Citrus paradise (naringin), soybean (genistein) and Crataeva nurvala (lupeol), described as having antinociceptive effects, on glutamatergic transmission parameters, such as [(3)H]glutamate binding, [(3)H]glutamate uptake by synaptic vesicles and astrocyte cultures, and synaptosomal [(3)H]glutamate release. All the glutamatergic parameters were affected by one or more of these compounds. Specifically, drimanial and polygodial presented more broad and profound effects, requiring more investigation on their mechanisms. The putative central side effects of these compounds, via the glutamatergic system, are discussed.

  5. Foxfire 4: Fiddle Making, Springhouses, Horse Trading, Sassafras Tea, Berry Buckets, Gardening, and Further Affairs of Plain Living.

    ERIC Educational Resources Information Center

    Wigginton, Eliot, Ed.

    Planting by the signs of the moon, well digging, hewing logs, wood carving, knife making, bird trapping, and horsetrading are but a few of the aspects of Appalachian culture explored in "Foxfire 4." Like its predecessors, the volume was compiled by high school students at Rabun Gap-Nacoochee School. Information on the cultural heritage…

  6. A high-performance model for shallow-water simulations in distributed and heterogeneous architectures

    NASA Astrophysics Data System (ADS)

    Conde, Daniel; Canelas, Ricardo B.; Ferreira, Rui M. L.

    2017-04-01

    One of the most common challenges in hydrodynamic modelling is the trade off one must make between highly resolved simulations and the time required for their computation. In the particular case of urban floods, modelers are often forced to simplify the complex geometries of the problem, or to implicitly include some of its hydrodynamic effects, due to the typically very large spatial scales involved and limited computational resources. At CEris - Instituto Superior Técnico, Universidade de Lisboa - the STAV-2D shallow-water model, particularly suited for strong transient flows in complex and dynamic geometries, has been under development for the past recent years (Canelas et al., 2013 & Conde et al., 2013). The model is based on an explicit, first-order 2DH finite-volume discretization scheme for unstructured triangular meshes, in which a flux-splitting technique is paired with a reviewed Roe-Riemann solver, yielding a model applicable to discontinuous flows over time-evolving geometries. STAV-2D features solid transport in both Euleran and Lagrangian forms, with the first aiming at describing the transport of fine natural sediments and the latter aimed at large individual debris. The model has been validated with theoretical solutions and laboratory experiments (Canelas et al., 2013 & Conde et al., 2015). This work presents our most recent effort in STAV-2D: the re-design of the code in a modern Object-Oriented parallel framework for heterogeneous computations in CPUs and GPUs. The programming language of choice for this re-design was C++, due to its wide support of established and emerging parallel programming interfaces. The current implementation of STAV-2D provides two different levels of parallel granularity: inter-node and intra-node. Inter-node parallelism is achieved by distributing a simulation across a set of worker nodes, with communication between nodes being explicitly managed through MPI. At this level, the main difficulty is associated with the

  7. Toxicity and uptake of cyclic nitramine explosives in ryegrass Lolium perenne.

    PubMed

    Rocheleau, Sylvie; Lachance, Bernard; Kuperman, Roman G; Hawari, Jalal; Thiboutot, Sonia; Ampleman, Guy; Sunahara, Geoffrey I

    2008-11-01

    Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX), octahydro-1,3,5,7-tetranitro-1,3,5,7-tetrazocine (HMX), and 2,4,6,8,10,12-hexanitro-2,4,6,8,10,12-hexaazaisowurtzitane (CL-20) are cyclic nitramines used as explosives. Their ecotoxicities have been characterized incompletely and little is known about their accumulation potential in soil organisms. We assessed the toxicity and uptake of these explosives in perennial ryegrass Lolium perenne L. exposed in a Sassafras sandy loam (SSL) or in a sandy soil (DRDC, CL-20 only) containing contrasting clay contents (11% and 0.3%, respectively). A 21-d exposure to RDX, HMX or CL-20 in either soil had no adverse effects on ryegrass growth. RDX and HMX were translocated to ryegrass shoots, with bioconcentration factors (BCF) of up to 15 and 11, respectively. In contrast, CL-20 was taken up by the roots (BCF up to 19) with no translocation to the shoots. These studies showed that RDX, HMX, and CL-20 can accumulate in plants and may potentially pose a risk of biomagnification across the food chain.

  8. Antileishmanial Potential of Tropical Rainforest Plant Extracts

    PubMed Central

    Monzote, Lianet; Piñón, Abel; Setzer, William N.

    2014-01-01

    A total of 115 different plant extracts from our collection, representing 96 plant species, have been evaluated for in vitro antileishmanial activity against L. amazonensis promastigotes. In addition, the extracts were screened for cytotoxic activity against BALB/c mouse macrophages in order to assess a selectivity index. Crude extracts that showed a selectivity index (CC50 for macrophage / IC50 for promastigotes) ≥ 5 or with IC50 < 12.5 μg/mL against promastigotes, a total of 28 extracts, were further screened for anti-amastigote activity. A total of 25 extracts showed promising activity against L. amazonensis promastigotes with low cytotoxic activity. Ten of these extracts showed selectivity indices, (CC50 for macrophages / IC50 for amastigotes) greater than 10 and are considered “hits”, worthy candidates for further phytochemical exploration: Conostegia xalapensis methanol bark extract, Endiandra palmerstonii bark extract, Eugenia monteverdensis acetone bark extract, Eugenia sp. “fine leaf” acetone bark extract, Exothea paniculata chloroform bark extract, Mallotus paniculatus ethanol bark extract, Matelea pseudobarbata ethanol extract, Quercus insignis ethanol bark extract, Sassafras albidum dichloromethane bark extract, and Stemmadenia donnell-smithii acetone bark extract. PMID:28933376

  9. Anti-quorum sensing activity of essential oils from Colombian plants.

    PubMed

    Jaramillo-Colorado, Beatriz; Olivero-Verbel, Jesus; Stashenko, Elena E; Wagner-Döbler, Irene; Kunze, Brigitte

    2012-01-01

    Essential oils from Colombian plants were characterised by GC-MS, and assayed for anti-quorum sensing activity in bacteria sensor strains. Two major chemotypes were found for Lippia alba, the limonene-carvone and the citral (geranial-neral). For other species, the main components included α-pinene (Ocotea sp.), β-pinene (Swinglea glutinosa), cineol (Elettaria cardamomun), α-zingiberene (Zingiber officinale) and pulegone (Minthostachys mollis). Several essential oils presented promising inhibitory properties for the short chain AHL quorum sensing (QS) system, in Escherichia coli containing the biosensor plasmid pJBA132, in particular Lippia alba. Moderate activity as anti-QS using the same plasmid, were also found for selected constituents of essential oils studied here, such as citral, carvone and α-pinene, although solely at the highest tested concentration (250 µg mL(-1)). Only citral presented some activity for the long chain AHL QS system, in Pseudomonas putida containing the plasmid pRK-C12. In short, essential oils from Colombian flora have promising properties as QS modulators.

  10. Foraging strategies in trees of different root morphology: the role of root lifespan.

    PubMed

    Adams, Thomas S; McCormack, M Luke; Eissenstat, David M

    2013-09-01

    Resource exploitation of patches is influenced not simply by the rate of root production in the patches but also by the lifespan of the roots inhabiting the patches. We examined the effect of sustained localized nitrogen (N) fertilization on root lifespan in four tree species that varied widely in root morphology and presumed foraging strategy. The study was conducted in a 12-year-old common garden in central Pennsylvania using a combination of data from minirhizotron and root in-growth cores. The two fine-root tree species, Acer negundo L. and Populus tremuloides Michx., exhibited significant increases in root lifespan with local N fertilization; no significant responses were observed in the two coarse-root tree species, Sassafras albidum Nutt. and Liriodendron tulipifera L. Across species, coarse-root tree species had longer median root lifespan than fine-root tree species. Localized N fertilization did not significantly increase the N concentration or the respiration of the roots growing in the N-rich patch. Our results suggest that some plant species appear to regulate the lifespan of different portions of their root system to improve resource acquisition while other species do not. Our results are discussed in the context of different strategies of foraging of nutrient patches in species of different root morphology.

  11. Energetic contaminants inhibit plant litter decomposition in soil.

    PubMed

    Kuperman, Roman G; Checkai, Ronald T; Simini, Michael; Sunahara, Geoffrey I; Hawari, Jalal

    2018-05-30

    Individual effects of nitrogen-based energetic materials (EMs) 2,4-dinitrotoluene (2,4-DNT), 2-amino-4,6-dinitrotoluene (2-ADNT), 4-amino-2,6-dinitrotoluene (4-ADNT), nitroglycerin (NG), and 2,4,6,8,10,12-hexanitrohexaazaisowurtzitane (CL-20) on litter decomposition, an essential biologically-mediated soil process, were assessed using Orchard grass (Dactylis glomerata) straw in Sassafras sandy loam (SSL) soil, which has physicochemical characteristics that support "very high" qualitative relative bioavailability for organic chemicals. Batches of SSL soil were separately amended with individual EMs or acetone carrier control. To quantify the decomposition rates, one straw cluster was harvested from a set of randomly selected replicate containers from within each treatment, after 1, 2, 3, 4, 6, and 8 months of exposure. Results showed that soil amended with 2,4-DNT or NG inhibited litter decomposition rates based on the median effective concentration (EC50) values of 1122 mg/kg and 860 mg/kg, respectively. Exposure to 2-ADNT, 4-ADNT or CL-20 amended soil did not significantly affect litter decomposition in SSL soil at ≥ 10,000 mg/kg. These ecotoxicological data will be helpful in identifying concentrations of EMs in soil that present an acceptable ecological risk for biologically-mediated soil processes. Published by Elsevier Inc.

  12. First report of Xyleborus glabratus (Coleoptera: Curculionidae: Scolytinae) and laurel wilt in Louisiana, USA: The disease continues westward on sassafras

    Treesearch

    Stephen W. Fraedrich; C. Wood Johnson; Roger D. Menard; Thomas C. Harrington; Rabiu Olatinwo; G. Susan Best

    2015-01-01

    Laurel wilt, caused by Raffaelea lauricola Harrington, Fraedrich & Aghayeva (Ophiostomatales: Ophiostomataceae), has spread rapidly through the coastal plains forests of the southeastern United States (USA) with devastating effects on redbay (Persea borbonia [L.] Spreng.; Laurales: Lauraceae) populations (Fraedrich et...

  13. [Analysis of human cyst echinococcosis in a northern Chilean region from 2008 to 2012].

    PubMed

    Soto-Aguilar, Andrea; Junod, Tania; Campillay, Mauricio; Acosta-Jamett, Gerardo; Landaeta-Aqueveque, Carlos

    2017-05-01

    The Coquimbo Region in Chile has the highest incidence of hydatidosis in central and northern Chile. To analyze the incidence of human cystic echinococcosis (CE) in the Coquimbo Region between 2008 and 2012. Official records of reported cases were analyzed. The association of the location, age and sex with the presence/absence of CE was analyzed by means of logistic regressions. The incidence was reported as cases per 100,000 inhabitants. The mean annual incidence was 2.6 cases per 100,000 inhabitants, which ranged from 3.1 (2010) to 1.9 (2012) cases. The districts with higher incidence were Punitaqui (21.2 cases), Paihuano (9 cases), Rio Hurtado (8 cases), Canela (8.1 cases), Monte Patria (7.9 cases), Vicuña (6.9 cases) and Combarbalá (6.9 cases). The incidence in these locations was significantly higher than elsewhere in the region. Males had a significantly higher incidence than females (3.3 and 1.8 respectively). Incidence increased significantly with age, notably increasing after 45 years of age. Rural locations had the highest incidences of CE in the Coquimbo Region. The disease was reported more commonly in adults and mainly in men.

  14. Ecological implications of Laurel Wilt infestation on Everglades Tree Islands, southern Florida

    USGS Publications Warehouse

    Snyder, James R.

    2014-01-01

    , laurel wilt disease also kills other native trees that are members of the laurel family, including swamp bay (Persea palustris), silk bay (Persea borbonia var. humilis), and sassafras (Sassafras albidum), as well as the economically important cultivated avocado (Persea americana) (Fraedrich and others, 2008). This paper is concerned primarily with swamp bay, an important component of Everglades tree islands.The spread of the redbay ambrosia beetle and its fungal symbiont has been very rapid, exceeding model predictions (Koch and Smith, 2008); by 2011, laurel wilt disease was found from the southern coastal plain of North Carolina to southern peninsular Florida. The first redbay ambrosia beetle was trapped in Miami-Dade County in March 2010, and laurel wilt disease was discovered in swamp bays in February 2011 and in commercial avocado groves about a year later (Kendra and others, 2013). By 2013, laurel wilt disease was seen in swamp bays throughout the southern Everglades in Everglades National Park, Big Cypress National Preserve, and Water Conservation Areas (WCAs) 3A and 3B (Rodgers and others, 2014).

  15. The association of Xyleborus glabratus and an Ophiostoma species with mortality of red bay and sassafras in the Southeastern U.S.

    Treesearch

    Robert J. Rabaglia; Stephen Fraedrich

    2007-01-01

    Extensive mortality of red bay (Persea borbonia [L.] Spreng) has been reported in coastal areas around Hilton Head Island, SC, and Savannah, GA, since the fall of 2003. In November, 2004 dead and dying red bay trees were examined on Hilton Head Island. Trees exhibited wilt-like symptoms and a distinct discoloration of the sapwood. Leaves on affected...

  16. Phytotoxicity of nitroaromatic energetic compounds freshly amended or weathered and aged in sandy loam soil.

    PubMed

    Rocheleau, Sylvie; Kuperman, Roman G; Martel, Majorie; Paquet, Louise; Bardai, Ghalib; Wong, Stephen; Sarrazin, Manon; Dodard, Sabine; Gong, Ping; Hawari, Jalal; Checkai, Ronald T; Sunahara, Geoffrey I

    2006-01-01

    The toxicities of 2,4,6-trinitrotoluene (TNT), 1,3,5-trinitrobenzene (TNB), 2,4-dinitrotoluene (2,4-DNT), and 2,6-dinitrotoluene (2,6-DNT) to terrestrial plants alfalfa (Medicago sativa L.), Japanese millet (Echinochloa crusgalli L.), and perennial ryegrass (Lolium perenne L.) were determined in Sassafras sandy loam soil using seedling emergence, fresh shoot, and dry mass measurement endpoints. A 13-week weathering and aging of energetic materials in soils, which included wetting and drying cycles, and exposure to sunlight of individual soil treatments, was incorporated into the study design to better reflect the soil exposure conditions in the field than toxicity determinations in freshly amended soils. Definitive toxicity tests showed that dinitrotoluenes were more phytotoxic for all plant species in freshly amended treatments based on EC20 values for dry shoot ranging from 3 to 24mgkg(-1) compared with values for TNB or TNT ranging from 43 to 62mgkg(-1). Weathering and aging of energetic materials (EMs) in soil significantly decreased the toxicity of TNT, TNB or 2,6-DNT to Japanese millet or ryegrass based on seedling emergence, but significantly increased the toxicity of all four EMs to all three plant species based on shoot growth. Exposure of the three plant species to relatively low concentrations of the four compounds initially stimulated plant growth before the onset of inhibition at greater concentrations (hormesis).

  17. Soil properties affect the toxicities of 2,4,6-trinitrotoluene (TNT) and hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) to the enchytraeid worm Enchytraeus crypticus.

    PubMed

    Kuperman, Roman G; Checkai, Ronald T; Simini, Michael; Phillips, Carlton T; Kolakowski, Jan E; Lanno, Roman

    2013-11-01

    The authors investigated individual toxicities of 2,4,6-trinitrotoluene (TNT) and hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) to the potworm Enchytraeus crypticus using the enchytraeid reproduction test. Studies were designed to generate ecotoxicological benchmarks that can be used for developing ecological soil-screening levels for ecological risk assessments of contaminated soils and to identify and characterize the predominant soil physicochemical parameters that can affect the toxicities of TNT and RDX to E. crypticus. Soils, which had a wide range of physicochemical parameters, included Teller sandy loam, Sassafras sandy loam, Richfield clay loam, Kirkland clay loam, and Webster clay loam. Analyses of quantitative relationships between the toxicological benchmarks for TNT and soil property measurements identified soil organic matter content as the dominant property mitigating TNT toxicity for juvenile production by E. crypticus in freshly amended soil. Both the clay and organic matter contents of the soil modulated reproduction toxicity of TNT that was weathered and aged in soil for 3 mo. Toxicity of RDX for E. crypticus was greater in the coarse-textured sandy loam soils compared with the fine-textured clay loam soils. The present studies revealed alterations in toxicity to E. crypticus after weathering and aging TNT in soil, and these alterations were soil- and endpoint-specific. © 2013 SETAC.

  18. HTP Nutraceutical Screening for Histone Deacetylase Inhibitors and Effects of HDACis on Tumor-suppressing miRNAs by Trichostatin A and Grapeseed (Vitis vinifera) in HeLa cells.

    PubMed

    Mazzio, Elizabeth A; Soliman, Karam F A

    2017-01-02

    ), Uva Ursi (Arctostaphylos uva ursi), Green tea (Camellia sinensis), Meadowsweet (Filipendula ulmaria), Sassafras (Sassafras officinale), Turkey rhubarb (Rheum palmatum), epigallocatechin gallate (EGCG), gossypol and gallic acid. Next, we investigate the biological consequence of HDACi panel drugs in HeLa cells, where the data suggest predominant effects are anti-mitotic rather than cytotoxic. Lastly, differential effects of TSA vs. GSE at sub-lethal concentrations tested on HeLa cells show 6,631 miRNAs expressed in resting cells, 35 significantly up-regulated (TSA) and 81 up-regulated (GSE), with several miRNAs overlapping in the upward direction by both GSE and TSA (e.g. hsa-miR-23b-5p, hsa-miR-27b-5p, hsa-miR-1180-3p, hsa-miR-6880-5p and hsa-mir-943). Using DIANA miRNA online tools, it was determined that GSE and TSA simultaneously cause overexpression of similar miRNAs predicted to destroy the following influential oncogenes: NFkB, NRAS, KRAS, HRAS, MYC, TGFBR1, E2F1, E2F2, BCL21, CDKN1A, CDK6, HIF1a, and VEGFA. The data from this study show that plant- based HDACis are relatively rare, and can elicit a similar pattern to TSA in up-regulating miRNAs involved with tumor suppression of HeLa cervical carcinoma. Copyright© 2017, International Institute of Anticancer Research (Dr. George J. Delinasios), All rights reserved.

  19. Mathematical modelling of tsunami impacts on critical infrastructures: exposure and severity associated with debris transport at Sines port, Portugal.

    NASA Astrophysics Data System (ADS)

    Conde, Daniel; Baptista, Maria Ana; Sousa Oliveira, Carlos; Ferreira, Rui M. L.

    2015-04-01

    Global energy production is still significantly dependant on the coal supply chain, justifying huge investments on building infrastructures, capable of stocking very large quantities of this natural resource. Most of these infrastructures are located at deep-sea ports and are therefore exposed to extreme coastal hazards, such as tsunami impacts. The 2011 Tohoku tsunami is reported to have inflicted severe damage to Japan's coal-fired power stations and related infrastructure. Sines, located in the Portuguese coast, hosts a major commercial port featuring an exposed coal stockpile area extending over more than 24 ha and a container terminal currently under expansion up to 100ha. It is protected against storm surges but tsunamis have not been considered in the design criteria. The dominant wind-generated wave direction is N to NW, while the main tsunamigenic faults are located S to SW of the port. This configuration potentially exposes sensitive facilities, such as the new terminal container and the coal stockpile area. According to a recent revision of the national tsunami catalogue (Baptista, 2009), Portugal has been affected by numerous major tsunamis over the last two millennia, with the most notorious event being the Great Lisbon Earthquake and Tsunami occurred on the 1st November 1755. The aim of this work is to simulate the open ocean propagation and overland impact of a tsunami on the Sines port, similar to the historical event of 1755, based on the different tsunamigenic faults and magnitudes proposed in the current literature. Open ocean propagation was modelled with standard simulation tools like TUNAMI and GeoClaw. Near-shore and overland propagation was carried out using a recent 2DH mathematical model for solid-fluid flows, STAV-2D from CERIS-IST (Ferreira et al., 2009; Canelas, 2013). STAV-2D is particularly suited for tsunami propagation over complex and morphodynamic geometries, featuring a discretization scheme based on a finite-volume method using

  20. Annual litterfall dynamics and nutrient deposition depending on elevation and land use at Mt. Kilimanjaro

    NASA Astrophysics Data System (ADS)

    Becker, J.; Pabst, H.; Mnyonga, J.; Kuzyakov, Y.

    2015-10-01

    Litterfall is one of the major pathways connecting above- and below-ground processes. The effects of climate and land-use change on carbon (C) and nutrient inputs by litterfall are poorly known. We quantified and analyzed annual patterns of C and nutrient deposition via litterfall in natural forests and agroforestry systems along the unique elevation gradient of Mt. Kilimanjaro. Tree litter in three natural (lower montane, Ocotea and Podocarpus forests), two sustainably used (homegardens) and one intensively managed (shaded coffee plantation) ecosystems was collected on a biweekly basis from May 2012 to July 2013. Leaves, branches and remaining residues were separated and analyzed for C and nutrient contents. The annual pattern of litterfall was closely related to rainfall seasonality, exhibiting a large peak towards the end of the dry season (August-October). This peak decreased at higher elevations with decreasing rainfall seasonality. Macronutrients (N, P, K) in leaf litter increased at mid elevation (2100 m a.s.l.) and with land-use intensity. Carbon content and micronutrients (Al, Fe, Mn, Na) however, were unaffected or decreased with land-use intensity. While leaf litterfall decreased with elevation, total annual input was independent of climate. Compared to natural forests, the nutrient cycles in agroforestry ecosystems were accelerated by fertilization and the associated changes in dominant tree species.

  1. Plants used traditionally to treat malaria in Brazil: the archives of Flora Medicinal

    PubMed Central

    Botsaris, Alexandros S

    2007-01-01

    The archives of Flora Medicinal, an ancient pharmaceutical laboratory that supported ethnomedical research in Brazil for more than 30 years, were searched for plants with antimalarial use. Forty plant species indicated to treat malaria were described by Dr. J. Monteiro da Silva (Flora Medicinal leader) and his co-workers. Eight species, Bathysa cuspidata, Cosmos sulphureus, Cecropia hololeuca, Erisma calcaratum, Gomphrena arborescens, Musa paradisiaca, Ocotea odorifera, and Pradosia lactescens, are related as antimalarial for the first time in ethnobotanical studies. Some species, including Mikania glomerata, Melampodium divaricatum, Galipea multiflora, Aspidosperma polyneuron, and Coutarea hexandra, were reported to have activity in malaria patients under clinical observation. In the information obtained, also, there were many details about the appropriate indication of each plant. For example, some plants are indicated to increase others' potency. There are also plants that are traditionally employed for specific symptoms or conditions that often accompany malaria, such as weakness, renal failure or cerebral malaria. Many plants that have been considered to lack activity against malaria due to absence of in vitro activity against Plasmodium can have other mechanisms of action. Thus researchers should observe ethnomedical information before deciding which kind of screening should be used in the search of antimalarial drugs. PMID:17472740

  2. Annual litterfall dynamics and nutrient deposition depending on elevation and land use at Mt. Kilimanjaro

    NASA Astrophysics Data System (ADS)

    Becker, J.; Pabst, H.; Mnyonga, J.; Kuzyakov, Y.

    2015-07-01

    Litterfall is one of the major pathways connecting above- and belowground processes. The effects of climate and land-use change on carbon (C) and nutrient inputs by litterfall are poorly known. We quantified and analyzed annual patterns of C and nutrient deposition via litterfall in natural forests and agroforestry systems along the unique elevation gradient of Mt. Kilimanjaro. Tree litter in three natural (lower montane, Ocotea and Podocarpus forests), two sustainably used (homegardens) and one intensively managed (shaded coffee plantation) was collected on a biweekly basis from May 2012 to July 2013. Leaves, branches and remaining residues were separated and analyzed for C and nutrient contents. The annual pattern of litterfall was closely related to rainfall seasonality, exhibiting a large peak towards the end of the dry season (August-October). This peak decreased at higher elevations with decreasing rainfall seasonality. Macronutrients (N, P, K) in leaf litter increased at mid elevation (2100 m a.s.l.) and with land-use intensity. Carbon content and micronutrients (Al, Fe, Mn, Na) however, were unaffected or decreased with land-use intensity. On the southern slope of Mt. Kilimanjaro, the annual pattern of litterfall depends on seasonal climatic conditions. While leaf litterfall decreased with elevation, total annual input was independent of climate. Compared to natural forests, the nutrient cycles in agroforestry ecosystems were accelerated by fertilization and the associated changes in dominant tree species.

  3. A lagrangian-eulerian description of debris transport by a tsunami in the Lisbon waterfront

    NASA Astrophysics Data System (ADS)

    Conde, Daniel; Canelas, Ricardo; Baptista, Maria Ana; João Telhado, Maria; Ferreira, Rui M. L.

    2013-04-01

    Several major tsunamis are known to have struck the Portuguese coast over the past millennia (Baptista and Miranda, 2009). The Tagus estuary has great exposure to tsunami occurrences and, being bordered by the largest metropolitan area in the country, is a particularly worrisome location in what concerns safety of populations and economic losses due to disruption of built infrastructures. The last major earthquake and tsunami combination known to have critically affected the Tagus estuary dates back to November 1st 1755. This catastrophe critically damaged Lisbon's infrastructures, led to numerous casualties and priceless heritage losses. The urban tissue of the present city still bears visible the effects of the catastrophe and of the ensuing protection measures. The objective of this work is to simulate the propagation of debris carried by a 1755-like tsunami along the present-day bathimetric and altimetric conditions of Lisbon waterfront. Particular emphasis was directed to the modeling of vehicles since the tsunami is likely to affect areas that are major traffic nodes such as Alcântara, with more than 1500 vehicles in road network of about 3 km. The simulation tool employed is based on a 2DH spatial (eulerian) shallow-flow approach suited to complex and dynamic bottom boundaries. The discretization technique relies on a finite-volume scheme, based on a flux-splitting technique incorporating a reviewed version of the Roe Riemann solver (Canelas et al. 2013). Two formulations were employed to model the advection of debris: a fully coupled continuum approach, where solid bodies are described by the concentration only and an uncoupled material (lagrangian) formulation where solid bodies are tracked between two time-steps once the flow field is determined by the eulerian solver. In the latter case, concentrations are updated after tracking the solid bodies thus correcting the mass and momentum balance to be used for the next time-step. The urban tissue was

  4. Mathematical modelling of the transport of a poorly sorted granular mixture as a debris-flow. The case of Madeira Island torrential floods in 2010

    NASA Astrophysics Data System (ADS)

    Ferreira, Rui M. L.; Oliveira, Rodrigo P.; Conde, Daniel

    2016-04-01

    On the 20th February 2010, heavy rainfall was registered at Madeira Island, North Atlantic. Stony debris flows, mudflows and mudslides ensued causing severe property loss, 1.5 m thick sediment deposits at downtown Funchal including 16th century monuments, and a death toll of 47 lives. Debris-flow fronts propagated downstream while carrying very high concentrations of solid material. These two-phase solid-fluid flows were responsible for most of the infrastructural damage across the island, due to their significantly increased mass and momentum. The objective of the present modelling work is to validate a 2DH model for torrential flows featuring the transport and interaction of several size fractions of a poorly-sorted granular mixture typical of stony debris flow in Madeira. The module for the transport of poorly-sorted material was included in STAV-2D (CERIS-IST), a shallow-water and morphology solver based on a finite-volume method using a flux-splitting technique featuring a reviewed Roe-Riemann solver, with appropriate source-term formulations to ensure full conservativeness. STAV-2D also includes formulations of flow resistance and bedload transport adequate for debris-flows with natural mobile beds (Ferreira et al., 2009) and has been validated with both theoretical solutions and laboratory data (Soares-Frazão et al., 2012; Canelas et al., 2013). The modelling of the existing natural and built environment is fully explicit. All buildings, streets and channels are accurately represented within the mesh geometry. Such detail is relevant for the reliability of the validation using field data, since the major sedimentary deposits within the urban meshwork of Funchal were identified and characterized in terms of volume and grain size distribution during the aftermath of the 20th February of 2010 event. Indeed, the measure of the quality of the numerical results is the agreement between simulated and estimated volume of deposited sediment and between estimated and

  5. Fungal Planet description sheets: 400-468.

    PubMed

    Crous, P W; Wingfield, M J; Richardson, D M; Le Roux, J J; Strasberg, D; Edwards, J; Roets, F; Hubka, V; Taylor, P W J; Heykoop, M; Martín, M P; Moreno, G; Sutton, D A; Wiederhold, N P; Barnes, C W; Carlavilla, J R; Gené, J; Giraldo, A; Guarnaccia, V; Guarro, J; Hernández-Restrepo, M; Kolařík, M; Manjón, J L; Pascoe, I G; Popov, E S; Sandoval-Denis, M; Woudenberg, J H C; Acharya, K; Alexandrova, A V; Alvarado, P; Barbosa, R N; Baseia, I G; Blanchette, R A; Boekhout, T; Burgess, T I; Cano-Lira, J F; Čmoková, A; Dimitrov, R A; Dyakov, M Yu; Dueñas, M; Dutta, A K; Esteve-Raventós, F; Fedosova, A G; Fournier, J; Gamboa, P; Gouliamova, D E; Grebenc, T; Groenewald, M; Hanse, B; Hardy, G E St J; Held, B W; Jurjević, Ž; Kaewgrajang, T; Latha, K P D; Lombard, L; Luangsa-Ard, J J; Lysková, P; Mallátová, N; Manimohan, P; Miller, A N; Mirabolfathy, M; Morozova, O V; Obodai, M; Oliveira, N T; Ordóñez, M E; Otto, E C; Paloi, S; Peterson, S W; Phosri, C; Roux, J; Salazar, W A; Sánchez, A; Sarria, G A; Shin, H-D; Silva, B D B; Silva, G A; Smith, M Th; Souza-Motta, C M; Stchigel, A M; Stoilova-Disheva, M M; Sulzbacher, M A; Telleria, M T; Toapanta, C; Traba, J M; Valenzuela-Lopez, N; Watling, R; Groenewald, J Z

    2016-06-01

    Novel species of fungi described in the present study include the following from Australia: Vermiculariopsiella eucalypti, Mulderomyces natalis (incl. Mulderomyces gen. nov.), Fusicladium paraamoenum, Neotrimmatostroma paraexcentricum, and Pseudophloeospora eucalyptorum on leaves of Eucalyptus spp., Anungitea grevilleae (on leaves of Grevillea sp.), Pyrenochaeta acaciae (on leaves of Acacia sp.), and Brunneocarpos banksiae (incl. Brunneocarpos gen. nov.) on cones of Banksia attenuata. Novel foliicolous taxa from South Africa include Neosulcatispora strelitziae (on Strelitzia nicolai), Colletotrichum ledebouriae (on Ledebouria floridunda), Cylindrosympodioides brabejum (incl. Cylindrosympodioides gen. nov.) on Brabejum stellatifolium, Sclerostagonospora ericae (on Erica sp.), Setophoma cyperi (on Cyperus sphaerocephala), and Phaeosphaeria breonadiae (on Breonadia microcephala). Novelties described from Robben Island (South Africa) include Wojnowiciella cissampeli and Diaporthe cissampeli (both on Cissampelos capensis), Phaeotheca salicorniae (on Salicornia meyeriana), Paracylindrocarpon aloicola (incl. Paracylindrocarpon gen. nov.) on Aloe sp., and Libertasomyces myopori (incl. Libertasomyces gen. nov.) on Myoporum serratum. Several novelties are recorded from La Réunion (France), namely Phaeosphaeriopsis agapanthi (on Agapanthus sp.), Roussoella solani (on Solanum mauritianum), Vermiculariopsiella acaciae (on Acacia heterophylla), Dothiorella acacicola (on Acacia mearnsii), Chalara clidemiae (on Clidemia hirta), Cytospora tibouchinae (on Tibouchina semidecandra), Diaporthe ocoteae (on Ocotea obtusata), Castanediella eucalypticola, Phaeophleospora eucalypticola and Fusicladium eucalypticola (on Eucalyptus robusta), Lareunionomyces syzygii (incl. Lareunionomyces gen. nov.) and Parawiesneriomyces syzygii (incl. Parawiesneriomyces gen. nov.) on leaves of Syzygium jambos. Novel taxa from the USA include Meristemomyces arctostaphylos (on Arctostaphylos patula

  6. Greenhouse gas emissions and N turnover along an altitudinal gradient at Mt. Kilimanjaro, Tanzania.

    NASA Astrophysics Data System (ADS)

    Gütlein, Adrian; Gerschlauer, Friederike; Zistl-Schlingmann, Marcus; Dannenmann, Michael; Meier, Rudolf; Kolar, Alison; Butterbach-Bahl, Klaus; Kiese, Ralf

    2016-04-01

    Worldwide climate and land-use change force alterations in various ecosystem properties and functions such as diversity and activity of soil microbial communities which are responsible for biogeochemical processes like soil nitrogen (N) turnover and associated greenhouse gas (GHG) exchange. Tropical deforestation is highest in Africa and despite the importance of those ecosystems to global climate and biogeochemical cycles, data for greenhouse gas exchange is still rare (Serca et al., 1994, Werner et al., 2007) and no study regarding N turnover processes has been published yet. For that reason, we focused on seven different land-use types extending along an altitudinal gradient (950 -- 3880m) at Mt. Kilimanjaro, East Africa, covering (semi-) natural savanna, two montane forests and one afro alpine ecosystem, an extensive agroforest (homegarden) and an intensively managed coffee plantation. On all ecosystems we measured CO_2, CH4 and N_2O fluxes and gross rates of ammonification, nitrification, N immobilization, and dissimilatory nitrate reduction to ammonium (DNRA). GHG results reveal pronounced N_2O fluxes depending mainly on soil moisture and to a lesser extent on soil temperature. Emissions are highest during the rainy seasons while lowest at dry season conditions. The largest N_2O emissions are recognizable at Ocotea forest, most likely due to the generally higher SOC/ totN and wetter conditions favoring formation and emission of N_2O via denitrification. Soils of the studied ecosystems were a sink of atmospheric CH

  7. Weathering and aging of 2,4,6-trinitrotoluene in soil increases toxicity to potworm Enchytraeus crypticus.

    PubMed

    Kuperman, Roman G; Checkai, Ronald T; Simini, Michael; Phillips, Carlton T; Kolakowski, Jan E; Kurnas, Carl W

    2005-10-01

    Energetic materials are employed in a wide range of commercial and military activities and often are released into the environment. Scientifically based ecological soil-screening levels (Eco-SSLs) are needed to identify contaminant explosive levels in soil that present an acceptable ecological risk. Insufficient information for 2,4,6-trinitrotoluene (TNT) to generate Eco-SSLs for soil invertebrates necessitated toxicity testing. We adapted the standardized Enchytraeid Reproduction Test and selected Enchytraeus crypticus for these studies. Tests were conducted in Sassafras sandy loam soil, which supports relatively high bioavailability of TNT. Weathering and aging procedures for TNT amended to test soil were incorporated into the study design to produce toxicity data that better reflect the soil exposure conditions in the field compared with toxicity in freshly amended soils. This included exposing hydrated TNT-amended soils in open glass containers in the greenhouse to alternating wetting and drying cycles. Definitive tests showed that toxicity for E. crypticus adult survival and juvenile production was increased significantly in weathered and aged soil treatments compared with toxicity in freshly amended soil based on 95% confidence intervals. The median effect concentration and 20% effective concentration for reproduction were 98 and 77 mg/kg, respectively, for TNT freshly amended into soil and 48 and 37 mg/kg, respectively, for weathered and aged TNT soil treatments. These findings of increased toxicity to E. crypticus in weathered and aged TNT soil treatments compared with exposures in freshly amended soils show that future investigations should include a weathering and aging component to generate toxicity data that provide more complete information on ecotoxicological effects of energetic contaminants in soil.

  8. A study of Solar-Enso correlation with southern Brazil tree ring index (1955- 1991)

    NASA Astrophysics Data System (ADS)

    Rigozo, N.; Nordemann, D.; Vieira, L.; Echer, E.

    The effects of solar activity and El Niño-Southern Oscillation on tree growth in Southern Brazil were studied by correlation analysis. Trees for this study were native Araucaria (Araucaria Angustifolia)from four locations in Rio Grande do Sul State, in Southern Brazil: Canela (29o18`S, 50o51`W, 790 m asl), Nova Petropolis (29o2`S, 51o10`W, 579 m asl), Sao Francisco de Paula (29o25`S, 50o24`W, 930 m asl) and Sao Martinho da Serra (29o30`S, 53o53`W, 484 m asl). From these four sites, an average tree ring Index for this region was derived, for the period 1955-1991. Linear correlations were made on annual and 10 year running averages of this tree ring Index, of sunspot number Rz and SOI. For annual averages, the correlation coefficients were low, and the multiple regression between tree ring and SOI and Rz indicates that 20% of the variance in tree rings was explained by solar activity and ENSO variability. However, when the 10 year running averages correlations were made, the coefficient correlations were much higher. A clear anticorrelation is observed between SOI and Index (r=-0.81) whereas Rz and Index show a positive correlation (r=0.67). The multiple regression of 10 year running averages indicates that 76% of the variance in tree ring INdex was explained by solar activity and ENSO. These results indicate that the effects of solar activity and ENSO on tree rings are better seen on long timescales.

  9. Burchellin: study of bioactivity against Aedes aegypti

    PubMed Central

    2014-01-01

    Background The dengue mosquito Aedes aegypti Linnaeus, 1762 is a widespread insect pest of serious medical importance. Since no effective vaccine is available for treating dengue, the eradication or control of the main mosquito vector is regarded as essential. Since conventional insecticides have limited success, plants may be an alternative source of larvicidal agents, since they contain a rich source of bioactive chemicals. The aim of this study was to evaluate the larvicidal activity of the neolignan burchellin isolated from Ocotea cymbarum (Lauraceae), a plant from the Amazon region, against third instar larvae of A. aegypti. Methods Burchellin obtained from O. cymbarum was analyzed. The inhibitory activity against A. aegypti eggs and larvae and histological changes in the digestive system of treated L3 larvae were evaluated. In addition, nitric oxide synthase activity and nitric oxide levels were determined, and cytotoxicity bioassays performed. Results The data showed that burchellin interfered with the development cycle of the mosquito, where its strongest toxic effect was 100% mortality in larvae (L3) at concentrations ≥ 30 ppm. This compound did not show target cell toxicity in peritoneal macrophages from BALB/c mice, and proved to have molecular stability when dissolved in water. The L3 and L4 larvae treated with the compound showed cellular destruction and disorganization, cell spacing, and vacuolization of epithelial cells in small regions of the midgut. Conclusion The neolignan burchellin proved to be a strong candidate for a natural, safe and stable phytolarvicidal to be used in population control of A. aegypti. PMID:24713267

  10. Acute and chronic toxicity of the new explosive CL-20 to the earthworm (Eisenia andrei) exposed to amended natural soils.

    PubMed

    Robidoux, Pierre Yves; Sunahara, Geoffrey I; Savard, Kathleen; Berthelot, Yann; Dodard, Sabine; Martel, Majorie; Gong, Ping; Hawari, Jalal

    2004-04-01

    Monocyclic nitramine explosives such as 1,3,5-trinitro-1,3,5-triazacyclohexane (RDX) and octahydro-1,3,5,7-tetranitro-1,3,5,7-tetrazocine (HMX) are toxic to a number of ecological receptors, including earthworms. The polycyclic nitramine CL-20 (2,4,6,8,10,12-hexanitro-2,4,6,8,10,12-hexaazaisowurtzitane) is a powerful explosive that may replace RDX and HMX, but its toxicity is not known. In the present study, the lethal and sublethal toxicities of CL-20 to the earthworm (Eisenia andrei) are evaluated. Two natural soils, a natural sandy forest soil (designated RacFor2002) taken in the Montreal area (QC, Canada; 20% organic carbon, pH 7.2) and a Sassafras sandy loam soil (SSL) taken on the property of U.S. Army Aberdeen Proving Ground (Edgewood, MD, USA; 0.33% organic carbon, pH 5.1), were used. Results showed that CL-20 was not lethal at concentrations of 125 mg/kg or less in the RacFor2002 soil but was lethal at concentrations of 90.7 mg/kg or greater in the SSL soil. Effects on the reproduction parameters such as a decrease in the number of juveniles after 56 d of exposure were observed at the initial CL-20 concentration of 1.6 mg/kg or greater in the RacFor2002 soil, compared to 0.2 mg/kg or greater in the SSL soil. Moreover, low concentrations of CL-20 in SSL soil (approximately 0.1 mg/kg; nominal concentration) were found to reduce the fertility of earthworms. Taken together, the present results show that CL-20 is a reproductive toxicant to the earthworm, with lethal effects at higher concentrations. Its toxicity can be decreased in soils favoring CL-20 adsorption (high organic carbon content).

  11. Essential oil of Croton Zehntneri attenuates lung injury in the OVA-induced asthma model.

    PubMed

    Serra, Daniel Silveira; Gomes, Maria Diana Moreira; Cavalcante, Francisco Sales Ávila; Leal-Cardoso, José Henrique

    2018-02-13

    Croton zehntneri Pax et Hoffm. is a Euphorbiaceae species, popularly known as "canela de cunhã," a native plant of northeastern Brazil, whose essential oil (EOCZ) shows relatively specific myorelaxant action for the smooth muscle of the airways and in the respiratory tract. Based on this information, EOCZ figures as a candidate for testing in the treatment of asthma, and the present study investigated the benefits of using EOCZ in an ovalbumin-induced asthma model. 48 male BALB/c mice were divided into six groups (n = 8). In the ST, SO100, and SO300 groups, mice were sensitized and challenged with saline, and then treated with 200 µL of 0.1% Tween 80, 100 mg/kg EOCZ and 300 mg/kg EOCZ, respectively. In the OT, OO100, and OO300 groups, mice were sensitized and challenged with OVA, and then treated with 200 µL of 0.1% Tween 80, 100 mg/kg EOCZ and 300 mg/kg EOCZ, respectively. Our results demonstrated significant changes in all respiratory mechanics variables analyzed between the OO300 and OT groups demonstrating the effectiveness of EOCZ to attenuate the OVA-induced lung injury. In addition, the use of EOCZ at a dose of 300 mg/kg showed an antioxidant effect and decreased inflammatory cells in the pulmonary parenchyma. In conclusion, our results demonstrated that EOCZ was able to improve the lesion in the respiratory system of mice subjected to OVA-induced asthma. The antioxidant action of EOCZ was likely the main mechanism of action in the reversal of this lesion, so more tests should be performed for its confirmation.

  12. Using high-performance mathematical modelling tools to predict erosion and sediment fluxes in peri-urban catchments

    NASA Astrophysics Data System (ADS)

    Pereira, André; Conde, Daniel; Ferreira, Carla S. S.; Walsh, Rory; Ferreira, Rui M. L.

    2017-04-01

    Deforestation and urbanization generally lead to increased soil erosion andthrough the indirect effect of increased overland flow and peak flood discharges. Mathematical modelling tools can be helpful for predicting the spatial distribution of erosion and the morphological changes on the channel network. This is especially useful to predict the impacts of land-use changes in parts of the watershed, namely due to urbanization. However, given the size of the computational domain (normally the watershed itself), the need for high spatial resolution data to model accurately sediment transport processes and possible need to model transcritical flows, the computational cost is high and requires high-performance computing techniques. The aim of this work is to present the latest developments of the hydrodynamic and morphological model STAV2D and its applicability to predict runoff and erosion at watershed scale. STAV2D was developed at CEris - Instituto Superior Técnico, Universidade de Lisboa - as a tool particularly appropriated to model strong transient flows in complex and dynamic geometries. It is based on an explicit, first-order 2DH finite-volume discretization scheme for unstructured triangular meshes, in which a flux-splitting technique is paired with a reviewed Roe-Riemann solver, yielding a model applicable to discontinuous flows over time-evolving geometries. STAV2D features solid transport in both Euleran and Lagrangian forms, with the aim of describing the transport of fine natural sediments and then the large individual debris. The model has been validated with theoretical solutions and laboratory experiments (Canelas et al., 2013 & Conde et al., 2015). STAV-2D now supports fully distributed and heterogeneous simulations where multiple different hardware devices can be used to accelerate computation time within a unified Object-Oriented approach: the source code for CPU and GPU has the same compilation units and requires no device specific branches, like

  13. The ENVISAT Atmospheric Chemistry mission (GOMOS, MIPAS and SCIAMACHY) -Processing status and data availability

    NASA Astrophysics Data System (ADS)

    Dehn, Angelika; Brizzi, G.; Barrot, G.; Bovensmann, H.; Canela, M.; Fehr, T.; Laur, H.; Lichtenberg, G.; Niro, F.; Perron, G.; Raspollini, P.; Saavedra de Miguel, L.; Scarpino, G.; Vogel, P.

    The atmospheric chemistry instruments on board the ENVISAT platform (GOMOS, MIPAS and SCIAMACHY) provide a unique dataset of geophysical parameters (e.g.: trace gases, clouds, and aerosol) that allows a comprehensive characterization of the atmosphere's chemical and climatological processes [1]. These instruments started to provide significant science data shortly after the launch of the ENVISAT satellite (March 2002). At the time of writing this paper, these instruments and the whole payload modules are fully working and are well beyond the expected lifetime of 5 years. In addition the orbit control strategy of the platform will be modified starting from 2010, in order to extend the mission lifetime up to 2013 [2]. This means that if no instrument problems will appear, the ENVISAT atmospheric sensors will provide at the end of their life, three separated, but complementary datasets of the most important atmospheric state parameters, spanning a time interval of about 11 years. This represents an extraordinary source of information for the scientific user community, both for the completeness and quality of the data and for the extent of the dataset. The aim of this paper is to present the actual status of the ESA operational atmospheric chemistry dataset provided by the three ENVISAT atmospheric chemistry instruments and the future evolution. The processing and reprocessing status will be described in details for each instrument. The outcomes of the geophysical validation and the planned validation activities will be discussed. Finally the data availability and the source of information will be specified. [1] H. Nett, J. Frerick, T. Paulsen, and G. Levrini, "The atmospheric instruments and their applications: GOMOS, MIPAS and SCIAMACHY", ESA Bulletin (ISSN 0376-4265), No. 106, p. 77 -87 (2001) [2] J. Frerick, B. Duesmann, and M. Canela, "2010 and beyond -The ENVISAT mission extension", Proc. `Envisat Symposium 2007', Montreux, Switzerland, 23-27 April 2007 (ESA SP

  14. Record of the Solar Activity and of Other Geophysical Phenomenons in Tree Ring

    NASA Astrophysics Data System (ADS)

    Rigozo, Nivaor Rodolfo

    1999-01-01

    Tree ring studies are usually used to determine or verify climatic factors which prevail in a given place or region and may cause tree ring width variations. Few studies are dedicated to the geophysical phenomena which may underlie these tree ring width variations. In order to look for periodicities which may be associated to the solar activity and/or to other geophysical phenomena which may influence tree ring growth, a new interactive image analysis method to measure tree ring width was developed and is presented here. This method makes use of a computer and a high resolution flatbed scanner; a program was also developed in Interactive Data Language (IDL 5.0) to study ring digitized images and transform them into time series. The main advantage of this method is the tree ring image interactive analysis without needing complex and high cost instrumentation. Thirty-nine samples were collected: 12 from Concordia - S. C., 9 from Canela - R. S., 14 from Sao Francisco de Paula - R. S., one from Nova Petropolis - R. S., 2 from Sao Martinho da Serra - R. S. e one from Chile. Fit functions are applied to ring width time series to obtain the best long time range trend (growth rate of every tree) curves and are eliminated through a standardization process that gives the tree ring index time series from which is performed spectral analysis by maximum entropy method and iterative regression. The results obtained show periodicities close to 11 yr, 22 yr Hale solar cycles and 5.5 yr for all sampling locations 52 yr and Gleissberg cycles for Concordia - S. C. and Chile samples. El Nino events were also observed with periods around 4 e 7 yr.

  15. The ENVISAT Atmospheric Chemistry mission (GOMOS, MIPAS and SCIAMACHY) - Processing status and data availability

    NASA Astrophysics Data System (ADS)

    Niro, F.

    2009-04-01

    The atmospheric chemistry instruments on board the ENVISAT platform (GOMOS, MIPAS and SCIAMACHY) provide a unique dataset of geophysical parameters (e.g.: trace gases, clouds, and aerosol) that allows a comprehensive characterization of the atmosphere's chemical and climatological processes [1]. These instruments started to provide significant science data shortly after the launch of the ENVISAT satellite (March 2002). At the time of writing this paper, these instruments and the whole payload modules are fully working and are well beyond the expected lifetime of 5 years. In addition the orbit control strategy of the platform will be modified starting from 2010, in order to extend the mission lifetime up to 2013 [2]. This means that if no instrument problems will appear, the ENVISAT atmospheric sensors will provide at the end of their life, three separated, but complementary datasets of the most important atmospheric state parameters, spanning a time interval of about 11 years. This represents an extraordinary source of information for the scientific user community, both for the completeness and quality of the data and for the extent of the dataset. The aim of this paper is to present the actual status of the ESA operational atmospheric chemistry dataset provided by the three ENVISAT atmospheric chemistry instruments and the future evolution. The processing and reprocessing status will be described in details for each instrument. The outcomes of the geophysical validation and the planned validation activities will be discussed. Finally the data availability and the source of information will be specified. [1] H. Nett, J. Frerick, T. Paulsen, and G. Levrini, "The atmospheric instruments and their applications: GOMOS, MIPAS and SCIAMACHY", ESA Bulletin (ISSN 0376-4265), No. 106, p. 77 - 87 (2001) [2] J. Frerick, B. Duesmann, and M. Canela, "2010 and beyond - The ENVISAT mission extension", Proc. ‘Envisat Symposium 2007', Montreux, Switzerland, 23-27 April 2007 (ESA

  16. Survival and reproduction of enchytraeid worms, Oligochaeta, in different soil types amended with energetic cyclic nitramines.

    PubMed

    Dodard, Sabine G; Sunahara, Geoffrey I; Kuperman, Roman G; Sarrazin, Manon; Gong, Ping; Ampleman, Guy; Thiboutot, Sonia; Hawari, Jalal

    2005-10-01

    Hexanitrohexaazaisowurtzitane (CL-20), a new polycyclic polynitramine, has the same functional nitramine groups (N-NO2) as the widely used energetic chemicals hexahydro-1,3,5-trinitro-1,3,5-triazacyclohexane (royal demolition explosive [RDX]) and octahydro-1,3,5,7-tetranitro-1,3,5,7-tetrazocine (high-melting explosive [HMX]). Potential impacts of CL-20 as an emerging contaminant must be assessed before its use. The effects of CL-20, RDX, or HMX on adult survival and juvenile production by potworms Enchytraeus albidus and Enchytraeus crypticus were studied in three soil types, including Sassafras sandy loam (1.2% organic matter [OM], 11% clay, pH 5.5), an agricultural soil (42% OM, 1% clay, pH 8.2), and a composite agricultural-forest soil (23% OM, 2% clay, pH 7.9) by using ISO method 16387 (International Standard Organization, Geneva, Switzerland). Results showed that CL-20 was toxic to E. crypticus with median lethal concentration values for adult survival ranging from 0.1 to 0.7 mg/kg dry mass (DM) when using the three tested soils. In addition, CL-20 adversely affected juvenile production by both species in all soils tested, with median effective concentration (EC50) values ranging from 0.08 to 0.62 mg/kg DM. Enchytraeus crypticus and E. albidus were similarly sensitive to CL-20 exposure in the composite agricultural-forest soil, which supported reproduction by both species and enabled comparisons. Correlation analysis showed weak or no relationship overall among the soil properties and reproduction toxicity endpoints. Neither RDX nor HMX affected (p > 0.05) adult survival of either species below 658 and 918 mg/kg DM, respectively, indicating that CL-20 is more toxic to enchytraeids than RDX or HMX. Examination of data shows that CL-20 should be considered as a potential reproductive toxicant to soil invertebrates, and that safeguards should be considered to minimize the potential for release of CL-20 into the environment.

  17. Adult nest attendance and diet of nestling Resplendent Quetzals (Pharomachrus mocinno) in the Talamanca Mountains of southern Cosa Rica

    USGS Publications Warehouse

    Carleton, Scott A.

    2016-01-01

    Resplendent Quetzals (Pharomachrus mocinno) inhabit mid to high elevation forests from southern Mexico to Panama. Lipid rich fruits from the Lauraceae family have been found to account for a large proportion of adult diet across their annual life cycle. To better understand the relationship between quetzals and Lauraceae during the breeding season, we studied food deliveries to nestlings in the Talamanca Mountains at San Gerardo de Dota, Costa Rica in the Rio Savegre watershed. Our study had four primary objectives: 1) determine parental contribution of males and females feeding nestling quetzals, 2) determine type of food delivered to nestling quetzals, 3) determine if deliveries of fruit items were related to their abundance and/or nutritional content and 4) determine if Lauraceae fruits made up a large proportion of nestling diets based on the high preference quetzals have displayed for fruits from this plant family. Hourly delivery rates were similar for the male and female (1.24 ± 0.68 and 1.44 ± 0.84). During the first 6 days, the largest proportion of the diet was animal prey; primarily lizards and beetles. After day 6, fruit rapidly became the dominant food item delivered to nestlings until fledging. The dominant number of fruits delivered to nestling quetzals were fruits from the Lauraceae family and included Ocotea holdrigeiana, Necatandra cufodontisii, and Aiouea costaricensis. All three had some of the highest protein and lipid content of all fruits delivered to nestlings. O. holdrigeiana had the highest protein and lipid content of all fruits delivered, had the lowest relative abundance, and was delivered more frequently than all other fruits. Conservation strategies for this species should take into account not just increasing available habitat, but also increasing habitat quality by focusing on species composition to provide abundant food plants for the Resplendent Quetzal to forage.

  18. ITS and trnH-psbA as Efficient DNA Barcodes to Identify Threatened Commercial Woody Angiosperms from Southern Brazilian Atlantic Rainforests.

    PubMed

    Bolson, Mônica; Smidt, Eric de Camargo; Brotto, Marcelo Leandro; Silva-Pereira, Viviane

    2015-01-01

    The Araucaria Forests in southern Brazil are part of the Atlantic Rainforest, a key hotspot for global biodiversity. This habitat has experienced extensive losses of vegetation cover due to commercial logging and the intense use of wood resources for construction and furniture manufacturing. The absence of precise taxonomic tools for identifying Araucaria Forest tree species motivated us to test the ability of DNA barcoding to distinguish species exploited for wood resources and its suitability for use as an alternative testing technique for the inspection of illegal timber shipments. We tested three cpDNA regions (matK, trnH-psbA, and rbcL) and nrITS according to criteria determined by The Consortium for the Barcode of Life (CBOL). The efficiency of each marker and selected marker combinations were evaluated for 30 commercially valuable woody species in multiple populations, with a special focus on Lauraceae species. Inter- and intraspecific distances, species discrimination rates, and ability to recover species-specific clusters were evaluated. Among the regions and different combinations, ITS was the most efficient for identifying species based on the 'best close match' test; similarly, the trnH-psbA + ITS combination also demonstrated satisfactory results. When combining trnH-psbA + ITS, Maximum Likelihood analysis demonstrated a more resolved topology for internal branches, with 91% of species-specific clusters. DNA barcoding was found to be a practical and rapid method for identifying major threatened woody angiosperms from Araucaria Forests such as Lauraceae species, presenting a high confidence for recognizing members of Ocotea. These molecular tools can assist in screening those botanical families that are most targeted by the timber industry in southern Brazil and detecting certain species protected by Brazilian legislation and could be a useful tool for monitoring wood exploitation.

  19. ITS and trnH-psbA as Efficient DNA Barcodes to Identify Threatened Commercial Woody Angiosperms from Southern Brazilian Atlantic Rainforests

    PubMed Central

    Brotto, Marcelo Leandro

    2015-01-01

    The Araucaria Forests in southern Brazil are part of the Atlantic Rainforest, a key hotspot for global biodiversity. This habitat has experienced extensive losses of vegetation cover due to commercial logging and the intense use of wood resources for construction and furniture manufacturing. The absence of precise taxonomic tools for identifying Araucaria Forest tree species motivated us to test the ability of DNA barcoding to distinguish species exploited for wood resources and its suitability for use as an alternative testing technique for the inspection of illegal timber shipments. We tested three cpDNA regions (matK, trnH-psbA, and rbcL) and nrITS according to criteria determined by The Consortium for the Barcode of Life (CBOL). The efficiency of each marker and selected marker combinations were evaluated for 30 commercially valuable woody species in multiple populations, with a special focus on Lauraceae species. Inter- and intraspecific distances, species discrimination rates, and ability to recover species-specific clusters were evaluated. Among the regions and different combinations, ITS was the most efficient for identifying species based on the ‘best close match’ test; similarly, the trnH-psbA + ITS combination also demonstrated satisfactory results. When combining trnH-psbA + ITS, Maximum Likelihood analysis demonstrated a more resolved topology for internal branches, with 91% of species-specific clusters. DNA barcoding was found to be a practical and rapid method for identifying major threatened woody angiosperms from Araucaria Forests such as Lauraceae species, presenting a high confidence for recognizing members of Ocotea. These molecular tools can assist in screening those botanical families that are most targeted by the timber industry in southern Brazil and detecting certain species protected by Brazilian legislation and could be a useful tool for monitoring wood exploitation. PMID:26630282

  20. Severity and exposure associated to tsunami actions in urban waterfronts. The case of Lisbon, Portugal.

    NASA Astrophysics Data System (ADS)

    Conde, Daniel; Telhado, Maria J.; Viana Baptista, Maria A.; Antunes, Carlos M.; Ferreira, Rui M. L.

    2014-05-01

    The Tagus estuary is recognized as an exposed location to tsunami occurrences, given its proximity to tsunamigenic faults such as the Marquês de Pombal and the Horseshoe fault system. Lisbon, bordered by the Tagus estuary, is a critical point of Portugal's tsunami hazard map, having been affected by several tsunamis (Baptista and Miranda, 2009) including the notorious event of November 1st 1755, the last major natural disaster known to have inflicted massive destruction in Portugal. The main objective of this work, a joint initiative of CEHIDRO (IST - Universidade de Lisboa) and the Municipal Civil Protection Services of Lisbon, is to contribute to the quantification of severity and exposure of Lisbon waterfront to tsunami events. For that purpose, the propagation of a tsunami similar to that of the 1st November of 1755 in the Tagus estuary was numerically simulated. Several scenarios were considered, articulating the influence of tidal (low and high tides), atmospheric (increase in water level due to storm surges) and hydrological (flow discharge in Tagus river) conditions. Different initial and boundary conditions were defined for each modelling scenario but the magnitude of the tsunami remained what is believed to be an exceptional event. The extent of the inundation and relevant hydrodynamic quantities were registered for all scenarios. The employed simulation tool - STAV-2D - was developed at CEHIDRO (IST) and is based on a 2DH spatial (Eulerian) shallow-flow approach suited to complex and dynamic bottom boundaries. The discretization technique relies on a finite-volume scheme, based on a flux-splitting technique incorporating a reviewed version of the Roe Riemann solver (Canelas et al. 2013, Conde et al. 2013). STAV-2D features conservation equations for the finer solid phase of the flow and also a Lagrangian model for the advection of larger debris elements. The urban meshwork was thoroughly discretized with a mesh finer than average street width. This fine

  1. Chinese vegetative materia medica in a venereological treatise by Jean Astruc from 1740.

    PubMed

    Drobnik, Jacek

    2016-07-01

    officinalis, Saposhnikovia divaricata, Sassafras tzumu, Smilax china, S. glabra, Stephania tetrandra, Styphnolobium japonicum, Trichosanthes japonica, T. kirilowii; China wax is also mentioned. Out of them, only Lonicera japonica is being used in China in late syphilis, Achyranthes bidentata in gonorrhoea, and Dictamnus dasycarpus in gynaecological problems. In the Astruc's study, 3 medicinal plant species and 5 further plant genera are correctly determined; other plant parts were misidentified. Antisyphilitic actions ascribed to the Chinese medical formulas and their constituents studied by Astruc, seem to have come from Hg or As compounds rather than from vegetative materia medica. The formulas contained only one species still known in TCM as a remedy for syphilis. Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.

  2. Potential role of frugivorous birds (Passeriformes) on seed dispersal of six plant species in a restinga habitat, southeastern Brazil.

    PubMed

    Gomes, Verônica Souza da Mota; Correia, Maria Célia Rodrigues; de Lima, Heloisa Alves; Alves, Maria Alice S

    2008-03-01

    Restingas are considered stressful habitats associated with the Brazilian Atlantic forest, and their ecological interactions are poorly known. The goal of the present study was to determine the potential role of frugivorous birds as seed dispersers in a restinga habitat. Data were collected in Parque Nacional da Restinga de Jurubatiba, southeastern Brazil, where the main physiognomy (Open Clusia Formation) is characterized by the presence of patches of vegetation covering 20 to 48 % of the sandy soil and reaching a height of 5 m. Birds were captured with mist nets (12 x 2.5 m; 36 mm mesh; 1,680 net-hrs) and had their fecal and regurgitate samples inspected for seeds. Six plant species found in these bird samples were studied. The germination of seeds obtained from plants was compared to those from the birds. Both groups of seeds were set on Petri dishes at room temperature and washed when infected with fungi. In general, there was no effect on germination rate, and the effect on germination speed was negative. Germination of seeds from Pilosocereus arrabidae treated by the birds seemed to be influenced by storage of defecated seeds, while few Miconia cinnamomifolia seeds both from plants and from birds germinated. Ocotea notata presented a great variation in time to the onset of germination, perhaps an advantage against dissecation. Aechmea nudicaulis, Clusia hilariana and Erythroxylum subsessile probably take advantage of the arrival to favorable microhabitats, not by the gut effect on the seeds. All plant species studied are numerically important for the community and some of them are main actors in the succession of vegetation patches. Among the birds, Mimus gilvus is an important resident species, endemic to restingas in Brazil, while Turdus amaurochalinus is a visitor and may be important for plants that fructify during its passage by the study site. Although the effect of pulp removal was only tested for one species (Achmea nudicaulis) in the present study

  3. The ENVISAT Atmospheric Chemistry mission (GOMOS, MIPAS and SCIAMACHY) - Instrument status and mission evolution

    NASA Astrophysics Data System (ADS)

    Niro, F.

    2009-04-01

    . Levrini, "The atmospheric instruments and their applications: GOMOS, MIPAS and SCIAMACHY", ESA Bulletin (ISSN 0376-4265), No. 106, p. 77 - 87 (2001) [2] J. Frerick, B. Duesmann, and M. Canela, "2010 and beyond - The ENVISAT mission extension", Proc. ‘Envisat Symposium 2007', Montreux, Switzerland, 23-27 April 2007 (ESA SP-636, July 2007)

  4. The ENVISAT Atmospheric Chemistry mission (GOMOS, MIPAS and SCIAMACHY) -Instrument status and mission evolution

    NASA Astrophysics Data System (ADS)

    Dehn, Angelika

    atmospheric instruments and their applications: GOMOS, MIPAS and SCIAMACHY", ESA Bulletin (ISSN 0376-4265), No. 106, p. 77 -87 (2001) [2] J. Frerick, B. Duesmann, and M. Canela, "2010 and beyond -The ENVISAT mission extension", Proc. `Envisat Symposium 2007', Montreux, Switzerland, 23-27 April 2007 (ESA SP-636, July 2007)

  5. Greenhouse gas exchange in tropical mountain ecosystems in Tanzania

    NASA Astrophysics Data System (ADS)

    Gerschlauer, Friederike; Kikoti, Imani; Kiese, Ralf

    2014-05-01

    Tropical mountain ecosystems with their mostly immense biodiversity are important regions for natural resources but also for agricultural production. Their supportive ecosystem processes are particularly vulnerable to the combined impacts of global warming and the conversion of natural to human-modified landscapes. Data of impacts of climate and land use change on soil-atmosphere interactions due to GHG (CO2, CH4, and N2O) exchange from these ecosystems are still scarce, in particular for Africa. Tropical forest soils are underestimated as sinks for atmospheric CH4 with regard to worldwide GHG budgets (Werner et al. 2007, J GEOPHYS RES Vol. 112). Even though these soils are an important source for the atmospheric N2O budget, N2O emissions from tropical forest ecosystems are still poorly characterized (Castaldi et al. 2013, Biogeosciences 10). To obtain an insight of GHG balances of selected ecosystems soil-atmosphere exchange of N2O, CH4 and CO2 was investigated along the southern slope of Mt. Kilimanjaro, Tanzania. We will present results for tropical forests in three different altitudes (lower montane, Ocotea, and Podocarpus forest), home garden (extensive agro-forestry), and coffee plantation (intensive agro-forestry). Therefore we used a combined approach consisting of a laboratory parameterization experiment (3 temperature and 2 moisture levels) and in situ static chamber measurements for GHG exchange. Field measurements were conducted during different hygric seasons throughout two years. Seasonal variation of temperature and especially of soil moisture across the different ecosystems resulted in distinct differences in GHG exchange. In addition environmental parameters like soil bulk density and substrate availability varying in space strongly influenced the GHG fluxes within sites. The results from parameterization experiments and in situ measurements show that natural forest ecosystems and extensive land use had higher uptakes of CH4. For the investigated

  6. Annual Proxy Records from Tropical Cloud Forest Trees in the Monteverde Cloud Forest, Costa Rica

    NASA Astrophysics Data System (ADS)

    Anchukaitis, K. J.; Evans, M. N.; Wheelwright, N. T.; Schrag, D. P.

    2005-12-01

    The extinction of the Golden Toad (Bufo periglenes) from Costa Rica's Monteverde Cloud Forest prompted research into the causes of ecological change in the montane forests of Costa Rica. Subsequent analysis of meteorological data has suggested that warmer global surface and tropical Pacific sea surface temperatures contribute to an observed decrease in cloud cover at Monteverde. However, while recent studies may have concluded that climate change is already having an effect on cloud forest environments in Costa Rica, without the context provided by long-term climate records, it is difficult to confidently conclude that the observed ecological changes are the result of anthropogenic climate forcing, land clearance in the lowland rainforest, or natural variability in tropical climate. To address this, we develop high-resolution proxy paleoclimate records from trees without annual rings in the Monteverde Cloud Forest in Costa Rica. Calibration of an age model in these trees is a fundamental prerequisite for proxy paleoclimate reconstructions. Our approach exploits the isotopic seasonality in the δ18O of water sources (fog versus rainfall) used by trees over the course of a single year. Ocotea tenera individuals of known age and measured annual growth increments were sampled in long-term monitored plantation sites in order to test this proposed age model. High-resolution (200μm increments) stable isotope measurements on cellulose reveal distinct, coherent δ18O cycles of 6 to 10‰. The calculated growth rates derived from the isotope timeseries match those observed from basal growth increment measurements. Spatial fidelity in the age model and climate signal is examined by using multiple cores from multiple trees and multiple sites. These data support our hypothesis that annual isotope cycles in these trees can be used to provide chronological control in the absence of rings. The ability of trees to record interannual climate variability in local hydrometeorology

  7. The Oligocene flora from the Uricani coalfield, Petrosani Basin, Romania

    NASA Astrophysics Data System (ADS)

    Pirnea, Roxana; Popa, Mihai E.

    2017-04-01

    The Petrosani Basin is a typical Oligocene - Miocene intramontaneous basin located in the South Carpathians. It has a SW-NE orientation and is 48-km long; its width is varying between 10 and 2 km, and it overlays the Danubian and Getic basements. The Oligocene sequences are filling the basin, with a thickness ranging between 300 and 500 m. They consist of clays, marls, bituminous shales, microconglomerates and limestones, including 22 coal beds. One essential feature of the Petrosani Basin is the occurrence of thick coal seams and the remains of a rich, 28 milion years old ecosystem. The studied material was collected from Uricani coal mine, from the „Lower Productive Horizon", Chattian in age (Upper Oligocene), and from Uricani coal waste dumps. The Lower Productive Horizon, also described as the Dalja-Uricani Formation, includes several coal seams and crops out in several areas (Buia et al., 2014). Collecting fossil plants from underground mining horizons represents a unique method for detailed understanding of coal bearing formations in a three-dimensional approach (Popa, 2011). Although the plant remains are represented by a large number of species, most specimens belong to the Family Lauraceae. The fossil flora is very well preserved, some of the leaves preserving their cuticles. The fossil plants from Uricani coal mine, Petro?ani Basin, are described, illustrated and discussed based on leaf impressions. The associated macroflora of Uricani coal mine comprises various leaf species of Daphnogene, Laurophyllum, Ocotea, Smilax and Alnus. Most of the studied woody plants are mesophytic, like Lauraceae (narrow-leaved Daphnogene, Laurophyllum), but the affinities of the plant remains from Uricani coalfield have not been clarified yet. Nonetheless, the taxonomic composition of the studied flora from Uricani coalfield points to a semi-tropical climate. The overall character of the depositional conditions of Petrosani Basin fit best to a flatland with surrounding

  8. VizieR Online Data Catalog: Follow-up photometry and spectroscopy of KELT-17 (Zhou+, 2016)

    NASA Astrophysics Data System (ADS)

    Zhou, G.; Rodriguez, J. E.; Collins, K. A.; Beatty, T.; Oberst, T.; Heintz, T. M.; Stassun, K. G.; Latham, D. W.; Kuhn, R. B.; Bieryla, A.; Lund, M. B.; Labadie-Bartz, J.; Siverd, R. J.; Stevens, D. J.; Gaudi, B. S.; Pepper, J.; Buchhave, L. A.; Eastman, J.; Colon, K.; Cargile, P.; James, D.; Gregorio, J.; Reed, P. A.; Jensen, E. L. N.; Cohen, D. H.; McLeod, K. K.; Tan, T. G.; Zambelli, R.; Bayliss, D.; Bento, J.; Esquerdo, G. A.; Berlind, P.; Calkins, M. L.; Blancato, K.; Manner, M.; Samulski, C.; Stockdale, C.; Nelson, P.; Stephens, D.; Curtis, I.; Kielkopf, J.; Fulton, B. J.; Depoy, D. L.; Marshall, J. L.; Pogge, R.; Gould, A.; Trueblood, M.; Trueblood, P.

    2017-05-01

    KELT-17, the first exoplanet host discovered through the combined observations of both the Kilodegree Extremely Little Telescope (KELT)-North and KELT-South, is located in KELT-South field 06 (KS06) and KELT-North field 14 (KN14), which are both centered on α=07h39m36s δ=+03°00'00'' (J2000). At the time of identification, the post-processed KELT data set included 2092 images from KN14, taken between UT 2011 October 11 and UT 2013 March 26 and 2636 images from KS06 taken between UT 2010 March 02 and 2013 May 10. The discovery light curves from both KELT-North and KELT-South are shown in Figure1. We obtained higher spatial resolution and precision photometric follow-up observations of KELT-17b in multiple filters. An I-band transit was observed on UT 2015 March 05 at the Canela's Robotic Observatory (CROW) with the 0.3m SCT12 telescope, remotely operated from Portalegre, Portugal. Observations were acquired with the ST10XME CCD camera, with a 30'*20' field of view and a 0.86'' pixel scale. A full multi-color (V and I) transit of KELT-17b was observed on UT 2015 March 12 at Kutztown University Observatory (KUO), located on the campus of Kutztown University in Kutztown, Pennsylvania. KUO's main instrument is the 0.6 m Ritchey-Chretien optical telescope with a focal ratio of f/8. The imaging CCD (KAF-6303E) camera has an array of 3K*2K (9μm) pixels and covers a field of view of 19.5'*13.0'. The Peter van de Kamp Observatory (PvdK) at Swarthmore College (near Philadelphia) houses a 0.62m Ritchey-Chretien reflector with a 4K*4K pixel Apogee CCD. The telescope and camera together have a 26'*26' field of view and a 0.61'' pixel scale. PvdK observed KELT-17b on UT 2015 March 12 in the SDSS z' filter. KELT-17b was observed in both g' and i' on UT 2015 March 12 at Wellesley College's Whitin Observatory in Massachusetts. The telescope is a 0.6m Boller and Chivens with a DFM focal reducer yielding an effective focal ratio of f/9.6. We used an Apogee U230 2K*2K camera with a