Multi-wavelength optical measurement to enhance thermal/optical analysis for carbonaceous aerosol

NASA Astrophysics Data System (ADS)

Chen, L.-W. A.; Chow, J. C.; Wang, X. L.; Robles, J. A.; Sumlin, B. J.; Lowenthal, D. H.; Zimmermann, R.; Watson, J. G.

2015-01-01

A thermal/optical carbon analyzer equipped with seven-wavelength light source/detector (405-980 nm) for monitoring spectral reflectance (R) and transmittance (T) of filter samples allowed "thermal spectral analysis (TSA)" and wavelength (λ)-dependent organic-carbon (OC)-elemental-carbon (EC) measurements. Optical sensing was calibrated with transfer standards traceable to absolute R and T measurements, adjusted for loading effects to report spectral light absorption (as absorption optical depth (τa, λ)), and verified using diesel exhaust samples. Tests on ambient and source samples show OC and EC concentrations equivalent to those from conventional carbon analysis when based on the same wavelength (~ 635 nm) for pyrolysis adjustment. TSA provides additional information that evaluates black-carbon (BC) and brown-carbon (BrC) contributions and their optical properties in the near infrared to the near ultraviolet parts of the solar spectrum. The enhanced carbon analyzer can add value to current aerosol monitoring programs and provide insight into more accurate OC and EC measurements for climate, visibility, or health studies.

Multi-wavelength optical measurement to enhance thermal/optical analysis for carbonaceous aerosol

NASA Astrophysics Data System (ADS)

Chen, L.-W. A.; Chow, J. C.; Wang, X. L.; Robles, J. A.; Sumlin, B.; Lowenthal, D. H.; Zimmermann, R.; Watson, J. G.

2014-09-01

A thermal/optical carbon analyzer equipped with seven-wavelength light source/detector (405-980 nm) for monitoring spectral reflectance (R) and transmittance (T) of filter samples allows "thermal spectral analysis (TSA)" and wavelength (λ)-dependent organic carbon (OC)-elemental carbon (EC) measurements. Optical sensing is calibrated with transfer standards traceable to absolute R and T measurements and adjusted for loading effects to determine spectral light absorption (as absorption optical depth [τa, λ]) using diesel exhaust samples as a reference. Tests on ambient and source samples show OC and EC concentrations equivalent to those from conventional carbon analysis when based on the same wavelength (~635 nm) for pyrolysis adjustment. TSA provides additional information that evaluates black carbon (BC) and brown carbon (BrC) contributions and their optical properties in the near-IR to the near-UV parts of the solar spectrum. The enhanced carbon analyzer can add value to current aerosol monitoring programs and provide insight into more accurate OC and EC measurements for climate, visibility, or health studies.

Identification of atmospheric organic sources using the carbon hollow tube-gas chromatography method and factor analysis

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cobb, G.P.; Braman, R.S.; Gilbert, R.A.

Atmospheric organics were sampled and analyzed by using the carbon hollow tube-gas chromatography method. Chromatograms from spice mixtures, cigarettes, and ambient air were analyzed. Principal factor analysis of row order chromatographic data produces factors which are eigenchromatograms of the components in the samples. Component sources are identified from the eigenchromatograms in all experiments and the individual eigenchromatogram corresponding to a particular source is determined in most cases. Organic sources in ambient air and in cigaretts are identified with 87% certainty. Analysis of clove cigarettes allows the determination of the relative amount of clove in different cigarettes. A new nondestructive qualitymore » control method using the hollow tube-gas chromatography analysis is discussed.« less

Carbon flow analysis and Carbon emission reduction of FCC in Chinese oil refineries

NASA Astrophysics Data System (ADS)

Jia, Fengrui; Wei, Na; Ma, Danzhu; Liu, Guangxin; Wu, Ming; Yue, Qiang

2017-08-01

The major problem of the energy production in oil refineries is the high emission of CO2 in China. The fluid catalytic cracking unit (FCC) is the key source of carbon emission in the oil refineries. According to the statistical data, the carbon emission of FCC unit accounts for more than 31% for the typical oil refineries. The carbon flow of FCC in the typical Chinese oil refineries were evaluated and analysed, which aimed at the solution of CO2 emission reduction. The method of substances flow analysis (SFA) and the mathematical programming were used to evaluate the carbon metabolism and optimize the carbon emission. The results indicated that the combustion emission of the reaction-regeneration subsystem (RRS) was the major source of FCC. The quantity of CO2 emission of RSS was more than 90%. The combustion efficiency and the amount of residual oil affected the carbon emission of RRS most according to the optimized analysis of carbon emission reduction. Moreover, the fractionation subsystem (TFS) had the highest environmental efficiency and the absorption-stabilization subsystem (ASS) had the highest resource efficiency (approximately to 1) of carbon.

Sequestering CO(2) by mineral carbonation: stability against acid rain exposure.

PubMed

Allen, Daniel J; Brent, Geoff F

2010-04-01

Mineral carbonation is a potentially attractive alternative to storage of compressed CO(2) in underground repositories, known as geosequestration. Processes for the conversion of basic ores, such as magnesium silicates, to carbonates have been proposed by various researchers, with storage of the carbonate as backfill in the original mine representing a solid carbon sink. The stability of such carbon sinks against acid rain and other sources of strong acids is examined here. It is acknowledged that in the presence of strong acid, carbonates will dissolve and release carbon dioxide. A sensitivity analysis covering annual average rainfall and pH that may be encountered in industrialized areas of the United States, China, Europe, and Australia was conducted to determine maximum CO(2) rerelease rates from mineral carbonation carbon sinks. This analysis is based on a worst-case premise that is equivalent to assuming infinitely rapid kinetics of dissolution of the carbonate. The analysis shows that under any likely conditions of pH and rainfall, leakage rates of stored CO(2) are negligible. This is illustrated in a hypothetical case study under Australian conditions. It is thus proposed that sequestration by mineral carbonation can be considered to be permanent on practical human time scales. Other possible sources of acid have also been considered.

Leveraging FIA data for analysis beyond forest reports: examples from the world of carbon

Treesearch

Brian F. Walters; Grant M. Domke; Christopher W. Woodall

2015-01-01

The Forest Inventory and Analysis program of the USDA Forest Service is the go-to source for data to estimate carbon stocks and stock changes for the annual national greenhouse gas inventory (NGHGI) of the United States. However, the different pools of forest carbon have not always been estimated directly from FIA measurements. As part of the new forest carbon...

Detection of Evolved Carbon Dioxide in the Rocknest Eolian Bedform by the Sample Analysis at Mars(SAM) Instrument at the Mars Curiosity Landing Site

NASA Technical Reports Server (NTRS)

Sutter, B.; Archer, D.; McAdam, A.; Franz, H.; Ming, D. W.; Eigenbrode, J. L.; Glavin, D. P.; Mahaffy, P.; Stern, J.; Navarro-Gonzalez, R.

2013-01-01

The Sample Analysis at Mars (SAM) instrument detected four releases of carbon dioxide (CO2) that ranged from 100 to 700 C from the Rocknest eolian bedform material (Fig. 1). Candidate sources of CO2 include adsorbed CO2, carbonate(s), combusted organics that are either derived from terrestrial contamination and/or of martian origin, occluded or trapped CO2, and other sources that have yet to be determined. The Phoenix Lander s Thermal Evolved Gas Analyzer (TEGA) detected two CO2 releases (400-600, 700-840 C) [1,2]. The low temperature release was attributed to Fe- and/or Mg carbonates [1,2], per-chlorate interactions with carbonates [3], nanophase carbonates [4] and/or combusted organics [1]. The high temperature CO2 release was attributed to a calcium bearing carbonate [1,2]. No evidence of a high temperature CO2 release similar to the Phoenix material was detected in the Rocknest materials by SAM. The objectives of this work are to evaluate the temperature and total contribution of each Rocknest CO2 release and their possible sources. Four CO2 releases from the Rocknest material were detected by SAM. Potential sources of CO2 are adsorbed CO2, (peak 1) and Fe/Mg carbonates (peak 4). Only a fraction of peaks 2 and 3 (0.01 C wt.%) may be partially attributed to combustion of organic contamination. Meteoritic organics mixed in the Rocknest bedform could be present, but the peak 2 and 3 C concentration (approx.0.21 C wt. %) is likely too high to be attributed solely to meteoritic organic C. Other inorganic sources of C such as interactions of perchlorates and carbonates and sources yet to be identified will be evaluated to account for CO2 released from the thermal decomposition of Rocknest material.

Life cycle analysis of switchgrass converted via pyrolysis, gasification, and fermentation

USDA-ARS?s Scientific Manuscript database

The US is promoting and developing low carbon fuel sources. Perennial bioenergy crops such as switchgrass (Panicum virgatum L.) are one viable source for low carbon transportation fuels. The objective is to determine the net greenhouse gas (GHG) emissions from different conversion methods (pyrolysi...

Resolution of the carbon contamination problem in ion irradiation experiments

NASA Astrophysics Data System (ADS)

Was, G. S.; Taller, S.; Jiao, Z.; Monterrosa, A. M.; Woodley, D.; Jennings, D.; Kubley, T.; Naab, F.; Toader, O.; Uberseder, E.

2017-12-01

The widely experienced problem of carbon uptake in samples during ion irradiation was systematically investigated to identify the source of carbon and to develop mitigation techniques. Possible sources of carbon included carbon ions or neutrals incorporated into the ion beam, hydrocarbons in the vacuum system, and carbon species on the sample and fixture surfaces. Secondary ion mass spectrometry, atom probe tomography, elastic backscattering spectrometry, and principally, nuclear reaction analysis, were used to profile carbon in a variety of substrates prior to and following irradiation with Fe2+ ions at high temperature. Ion irradiation of high purity Si and Ni, and also of alloy 800H coated with a thin film of alumina eliminated the ion beam as the source of carbon. Hydrocarbons in the vacuum and/or on the sample and fixtures was the source of the carbon that became incorporated into the samples during irradiation. Plasma cleaning of the sample and sample stage, and incorporation of a liquid nitrogen cold trap both individually and especially in combination, completely eliminated the uptake of carbon during heavy ion irradiation. While less convenient, coating the sample with a thin film of alumina was also effective in eliminating carbon incorporation.

Year-round Source Contributions of Fossil Fuel and Biomass Combustion to Elemental Carbon on the North Slope Alaska Utilizing Radiocarbon Analysis

NASA Astrophysics Data System (ADS)

Barrett, T. E.; Gustafsson, O.; Winiger, P.; Moffett, C.; Back, J.; Sheesley, R. J.

2015-12-01

It is well documented that the Arctic has undergone rapid warming at an alarming rate over the past century. Black carbon (BC) affects the radiative balance of the Arctic directly and indirectly through the absorption of incoming solar radiation and by providing a source of cloud and ice condensation nuclei. Among atmospheric aerosols, BC is the most efficient absorber of light in the visible spectrum. The solar absorbing efficiency of BC is amplified when it is internally mixed with sulfates. Furthermore, BC plumes that are fossil fuel dominated have been shown to be approximately 100% more efficient warming agents than biomass burning dominated plumes. The renewal of offshore oil and gas exploration in the Arctic, specifically in the Chukchi Sea, will introduce new BC sources to the region. This study focuses on the quantification of fossil fuel and biomass combustion sources to atmospheric elemental carbon (EC) during a year-long sampling campaign in the North Slope Alaska. Samples were collected at the Department of Energy Atmospheric Radiation Measurement (ARM) climate research facility in Barrow, AK, USA. Particulate matter (PM10) samples collected from July 2012 to June 2013 were analyzed for EC and sulfate concentrations combined with radiocarbon (14C) analysis of the EC fraction. Radiocarbon analysis distinguishes fossil fuel and biomass burning contributions based on large differences in end members between fossil and contemporary carbon. To perform isotope analysis on EC, it must be separated from the organic carbon fraction of the sample. Separation was achieved by trapping evolved CO2 produced during EC combustion in a cryo-trap utilizing liquid nitrogen. Radiocarbon results show an average fossil contribution of 85% to atmospheric EC, with individual samples ranging from 47% to 95%. Source apportionment results will be combined with back trajectory (BT) analysis to assess geographic source region impacts on the EC burden in the western Arctic.

Insights into the simultaneous utilization of glucose and glycerol by Streptomyces albulus M-Z18 for high ε-poly-L-lysine productivity.

PubMed

Zeng, Xin; Zhao, Junjie; Chen, Xusheng; Mao, Zhonggui; Miao, Wenyun

2017-12-01

The simultaneous consumption of glucose and glycerol led to remarkably higher productivity of both biomass and ε-poly-L-lysine (ε-PL), which was of great significance in industrial microbial fermentation. To further understand the superior fermentation performances, transcriptional analysis and exogenous substrates addition were carried out to study the simultaneous utilization of glucose and glycerol by Streptomyces albulus M-Z18. Transcriptome analysis revealed that there was no mutual transcriptional suppression between the utilization of glucose and glycerol, which was quite different from typical "glucose effect". In addition, microorganisms cultivated with single glycerol showed significant demand for ribose-5-phosphate, which resulted in potential demand for glucose and xylitol. The above demand could be relieved by glucose (in the mixed carbon source) or xylitol addition, leading to improvement of biomass production. It indicated that glucose in the mixed carbon source was more important for biomass production. Besides, transcriptional analysis and exogenous citrate addition proved that single carbon sources could not afford enough carbon skeletons for Embden Meyerhof pathway (EMP) while a glucose-glycerol combination could provided sufficient carbon skeletons to saturate the metabolic capability of EMP, which contributed to the replenishment of precursors and energy consumed in ε-PL production. This study offered insight into the simultaneous consumption of glucose and glycerol in the ε-PL batch fermentation, which deepened our comprehension on the high ε-PL productivity in the mixed carbon source.

Methods of analysis for complex organic aerosol mixtures from urban emission sources of particulate carbon

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mazurek, M.A.; Hildemann, L.M.; Cass, G.R.

1990-04-01

Extractable organic compounds having between 6 to 40 carbon atoms comprise an important mass fraction of the fine particulate matter samples from major urban emission sources. Depending on the emission source type, this solvent-soluble fraction accounts for <20% to 100% of the total organic aerosol mass, as measured by quantitative high-resolution has chromatography (HRGC) with flame ionization detection. In addition to total extract quantitation, HRGC can be applied to further analyses of the mass distributions of elutable organics present in the complex aerosol extract mixtures, thus generating profiles that serve as fingerprints'' for the sources of interest. This HRGC analyticalmore » method is applied to emission source samples that contain between 7 to 12,000 {mu}g/filter organic carbon. It is shown to be a sensitive technique for analysis of carbonaceous aerosol extract mixtures having diverse mass loadings and species distributions. This study describes the analytical chemical methods that have been applied to: the construction of chemical mass balances based on the mass of fine organic aerosol emitted for major urban sources of particulate carbon; and the generation of discrete emission source chemical profiles derived from chromatographic characteristics of the organic aerosol components. 21 refs., 1 fig., 2 tabs.« less

New PHA products using unrelated carbon sources

PubMed Central

Matias, Fernanda; de Andrade Rodrigues, Maria Filomena

2011-01-01

Polyhydroxyalkanoates (PHA) are natural polyesters stored by a wide range of bacteria as carbon source reserve. Due to its chemical characteristics and biodegradability PHA can be used in chemical, medical and pharmaceutical industry for many human purposes. Over the past years, few Burkholderia species have become known for production of PHA. Aside from that, these bacteria seem to be interesting for discovering new PHA compositions which is important to different industrial applications. In this paper, we introduce two new strains which belong either to Burkholderia cepacia complex (Bcc) or genomovar-type, Burkholderia cepacia SA3J and Burkholderia contaminans I29B, both PHA producers from unrelated carbon sources. The classification was based on 16S rDNA and recA partial sequence genes and cell wall fatty acids composition. These two strains were capable to produce different types of PHA monomers or precursors. Unrelated carbon sources were used for growth and PHA accumulation. The amount of carbon source evaluated, or mixtures of them, was increased with every new experiment until it reaches eighteen carbon sources. As first bioprospection experiments staining methods were used with colony fluorescent dye Nile Red and the cell fluorescent dye Nile Blue A. Gas chromatography analysis coupled to mass spectrometry was used to evaluate the PHA composition on each strain cultivated on different carbon sources. The synthesized polymers were composed by short chain length-PHA (scl-PHA), especially polyhydroxybutyrate, and medium chain length-PHA (mcl-PHA) depending on the carbon source used. PMID:24031764

[Carbon sources metabolic characteristics of airborne microbial communities in constructed wetlands].

PubMed

Song, Zhi-Wen; Wang, Lin; Xu, Ai-Ling; Wu, Deng-Deng; Xia, Yan

2015-02-01

Using BIOLOG-GN plates, this article describes the carbon sources metabolic characteristics of airborne microbial communities in a free surface-flow constructed wetland in different seasons and clarify the correlation between airborne microbial metabolic functions and environmental factors. The average well color development (AWCD), carbon metabolic profiles and McIntosh values of airborne microbial communities in different seasons were quite different. Analysis of the variations showed that AWCD in spring and summer differed significantly from that in autumn and winter (P < 0.01). In the same season, the degree of utilization of different types of carbon by airborne microbes was different. Summer had a significant difference from other seasons (P < 0.05). Dominant communities of airborne microbes in four seasons were carboxylic acids metabolic community, carbohydrates metabolic community, polymers metabolic community and carboxylic acids metabolic community respectively. Principal component analysis showed that the carbon metabolic characteristics of airborne microbial community in autumn were similar to those in winter but different from those in spring and summer. The characteristics of carbon metabolism revealed differences between summer and spring, autumn, or winter. These differences were mainly caused by amines or amides while the differences between spring and autumn or winter were mainly caused by carboxylic acids. Environmental factors, including changes in wind speed, temperature, and humidity acted to influence the carbon sources metabolic properties of airborne microbial community. The dominant environmental factors that acted to influence the carbon sources metabolic properties of airborne microbial community varied between different seasons.

Malate as a key carbon source of leaf dark-respired CO2 across different environmental conditions in potato plants

PubMed Central

Lehmann, Marco M.; Rinne, Katja T.; Blessing, Carola; Siegwolf, Rolf T. W.; Buchmann, Nina; Werner, Roland A.

2015-01-01

Dissimilation of carbon sources during plant respiration in support of metabolic processes results in the continuous release of CO2. The carbon isotopic composition of leaf dark-respired CO2 (i.e. δ 13 C R) shows daily enrichments up to 14.8‰ under different environmental conditions. However, the reasons for this 13C enrichment in leaf dark-respired CO2 are not fully understood, since daily changes in δ13C of putative leaf respiratory carbon sources (δ 13 C RS) are not yet clear. Thus, we exposed potato plants (Solanum tuberosum) to different temperature and soil moisture treatments. We determined δ 13 C R with an in-tube incubation technique and δ 13 C RS with compound-specific isotope analysis during a daily cycle. The highest δ 13 C RS values were found in the organic acid malate under different environmental conditions, showing less negative values compared to δ 13 C R (up to 5.2‰) and compared to δ 13 C RS of soluble carbohydrates, citrate and starch (up to 8.8‰). Moreover, linear relationships between δ 13 C R and δ 13 C RS among different putative carbon sources were strongest for malate during daytime (r2=0.69, P≤0.001) and nighttime (r2=0.36, P≤0.001) under all environmental conditions. A multiple linear regression analysis revealed δ 13 C RS of malate as the most important carbon source influencing δ 13 C R. Thus, our results strongly indicate malate as a key carbon source of 13C enriched dark-respired CO2 in potato plants, probably driven by an anapleurotic flux replenishing intermediates of the Krebs cycle. PMID:26139821

Nanophase Carbonates on Mars: Does Evolved Gas Analysis of Nanophase Carbonates Reveal a Large Organic Carbon Budget in Near-Surface Martian Materials?

NASA Technical Reports Server (NTRS)

Archer, P. Douglas, Jr.; Niles, Paul B.; Ming, Douglas W.; Sutter, Brad; Eigenbrode, Jen

2015-01-01

Evolved Gas Analysis (EGA), which involves heating a sample and monitoring the gases released, has been performed on Mars by the Viking gas chromatography/mass spectrometry instruments, the Thermal and Evolved Gas Analyzer (TEGA) on the Phoenix lander, and the Sample Analysis at Mars (SAM) instrument on the Mars Science Laboratory. All of these instruments detected CO2 released during sample analysis at abundances of approx. 0.1 to 5 wt% assuming a carbonate source. The source of the CO2 can be constrained by evaluating the temperature of the gas release, a capability of both the TEGA and SAM instruments. The samples analyzed by SAM show that the majority of the CO2 is released below 400C, much lower than traditional carbonate decomposition temperatures which can be as low as 400C for some siderites, with magnesites and calcites decomposing at even higher temperatures. In addition to mineralogy, decomposition temperature can depend on particle size (among other factors). If carbonates formed on Mars under low temperature and relative humidity conditions, the resulting small particle size (nanophase) carbonates could have low decomposition temperatures. We have found that calcite can be synthesized by exposing CaO to water vapor and CO2 and that the resulting mineral has an EGA peak of approx. 550C for CO2, which is about 200C lower than for other calcites. Work is ongoing to produce Fe and Mg-bearing carbonates using the same process. Current results suggest that nanophase calcium carbonates cannot explain the CO2 released from martian samples. If the decomposition temperatures of Mg and Fe-bearing nanophase carbonates are not significantly lower than 400C, other candidate sources include oxalates and carboxylated organic molecules. If present, the abundance of organic carbon in these samples could be greater than 0.1 wt % (1000s of ppm), a signficant departure from the paradigm of the organic-poor Mars based on Viking results.

Effect of carbon source type on intracellular stored polymers during endogenous denitritation (ED) treating landfill leachate.

PubMed

Miao, Lei; Wang, Shuying; Li, Baikun; Cao, Tianhao; Zhang, Fangzhai; Wang, Zhong; Peng, Yongzhen

2016-09-01

Glycogen accumulating organisms (GAOs) capable of storing organic compounds as polyhydroxyalkanoate (PHA) have been used for endogenous denitritation (ED), but the effect of carbon sources type on nitrogen removal performance of GAOs treating landfill leachate is unclear. In this study, a successful ED system treating landfill leachate (COD/NH4(+)-N (C/N): 4) without external carbon source addition was applied. The mature leachate with C/N of 1 was used as the feeding base solution, with acetate, propionate, and glucose examined as the carbon sources, and their effects on yields and compositions of PHA produced by GAOs were determined and associated with nitrogen removal performance. In the case of sole carbon source, acetate was much easier to be stored than propionate and glucose, which led to a higher nitrogen removal efficiency. Glucose had the lowest amount of PHA storage and led to the lowest performance. In the case of composite carbon sources (two scenarios: acetate + propionate; acetate + propionate + glucose), GAOs stored sufficient PHA and exhibited similar nitrogen removal efficiencies. Moreover, type of carbon source influenced the compositions of PHA. The polyhydroxybutyrate (PHB) fraction in PHA was far more than polyhydroxyvalerate (PHV) in all tests. PHV was synthesized only when acetate existed in carbon source. The microbial diversity analysis revealed that Proteobacteria was the most abundant phylum. Among the 108 genera detected in this ED system, the genera responsible for denitritation were Thauera, Paracoccus, Ottowia and Comamonadaceae_unclassified, accounting for 46.21% of total bacteria. Especially, Paracoccus and Comamonadaceae_unclassified transformed the carbon source into PHA for denitritation, and carried out endogenous denitritation. Copyright © 2016 Elsevier Ltd. All rights reserved.

Characterization of Arctic elemental carbon in Barrow, AK using radiocarbon source apportionment

NASA Astrophysics Data System (ADS)

Barrett, T. E.; Usenko, S.; Robinson, E. M.; Sheesley, R. J.

2013-12-01

Currently, the Arctic is one of the fastest warming regions on earth with surface temperatures increasing at a rate nearly double the global mean over recent decades. Despite the fact that atmospheric concentrations of elemental carbon (EC) are lower in the Arctic than in lower latitudes, deposition of EC on snow and ice may exacerbate regional warming by simultaneously decreasing albedo and increasing melt rates. Due to the intensifying Arctic oil exploration in areas such as the Beaufort and Chukchi seas, the impact of new emission sources such as heavy fuel and heavy diesel combustion on regional carbon needs to be assessed. The first step in developing mitigation strategies for reducing current and future EC emissions in the Arctic is to determine emission source contributions. This study aims to determine the relative contributions of fossil fuel and biomass combustion and to identify major source regions of EC to the Arctic. Radiocarbon analysis of both total organic carbon (TOC) and EC combined with organic tracer and back trajectory analysis has been applied to a set of wintertime coarse particulate matter (PM10) samples from Barrow, AK. Preliminary apportionment for January 2013 indicates roughly half of TOC is from biogenic/biomass burning emissions and one third of EC is due to biomass burning emissions. The radiocarbon results will be combined with organic tracer analysis (polycyclic aromatic hydrocarbons, petroleum biomarkers and normal alkanes), increasing the specificity of the relative contribution of both the fossil and modern (biogenic/biomass burning) carbon emission sources. This research represents the first reported radiocarbon values for Arctic EC, providing highly conclusive source apportionment prior to the influence of increased drilling operations and ship traffic in the Beaufort and Chukchi seas.

Terrestrial and marine trophic pathways support young-of-year growth in a nearshore Arctic fish

USGS Publications Warehouse

von Biela, Vanessa R.; Zimmerman, Christian E.; Cohn, Brian R.; Welker, Jeffrey M.

2013-01-01

River discharge supplies nearshore communities with a terrestrial carbon source that is often reflected in invertebrate and fish consumers. Recent studies in the Beaufort Sea have documented widespread terrestrial carbon use among invertebrates, but only limited use among nearshore fish consumers. Here, we examine the carbon source and diet of rapidly growing young-of-year Arctic cisco (Coregonus autumnalis) using stable isotope values (δ13C and δ15N) from muscle and diet analysis (stomach contents) during a critical and previously unsampled life stage. Stable isotope values (δ15N and δ13C) may differentiate between terrestrial and marine sources and integrate over longer time frames (weeks). Diet analysis provides species-specific information, but only from recent foraging (days). Average δ13C for all individuals was −25.7 ‰, with the smallest individuals possessing significantly depleted δ13C values indicative of a stronger reliance of terrestrial carbon sources as compared to larger individuals. Average δ15N for all individuals was 10.4 ‰, with little variation among individuals. As fish length increased, the proportion of offshore Calanus prey and neritic Mysis prey increased. Rapid young-of-year growth in Arctic cisco appears to use terrestrial carbon sources obtained by consuming a mixture of neritic and offshore zooplankton. Shifts in the magnitude or phenology of river discharge and the delivery of terrestrial carbon may alter the ecology of nearshore fish consumers.

Constraints on primary and secondary particulate carbon sources using chemical tracer and 14C methods during CalNex-Bakersfield

EPA Science Inventory

The present study investigates primary and secondary sources of organic carbon for Bakersfield, CA, USA as part of the 2010 CalNex study. The method used here involves integrated sampling that is designed to allow for detailed and specific chemical analysis of particulate matter ...

The impact of agricultural soil erosion on the global carbon cycle

USGS Publications Warehouse

Van Oost, Kristof; Quine, T.A.; Govers, G.; De Gryze, S.; Six, J.; Harden, J.W.; Ritchie, J.C.; McCarty, G.W.; Heckrath, G.; Kosmas, C.; Giraldez, J.V.; Marques Da Silva, J.R.; Merckx, R.

2007-01-01

Agricultural soil erosion is thought to perturb the global carbon cycle, but estimates of its effect range from a source of 1 petagram per year -1 to a sink of the same magnitude. By using caesium-137 and carbon inventory measurements from a large-scale survey, we found consistent evidence for an erosion-induced sink of atmospheric carbon equivalent to approximately 26% of the carbon transported by erosion. Based on this relationship, we estimated a global carbon sink of 0.12 (range 0.06 to 0.27) petagrams of carbon per year-1 resulting from erosion in the world's agricultural landscapes. Our analysis directly challenges the view that agricultural erosion represents an important source or sink for atmospheric CO2.

Distribution, Sources, and Association of Polycyclic Aromatic Hydrocarbons, Black Carbon, and Total Organic Carbon in Size-Segregated Soil Samples Along a Background–Urban–Rural Transect

PubMed Central

Ray, Sharmila; Khillare, Pandit Sudan; Kim, Ki-Hyun; Brown, Richard J.C.

2012-01-01

Abstract Soil samples were collected over a year-long period along a background–urban–rural transect in Delhi, India for the analysis of polycyclic aromatic hydrocarbons (PAHs), black carbon (BC), and total organic carbon (TOC) in five grain size fractions, x, in μm of 0≤x<53 (I), 53≤x<250 (II), 250≤x<500 (III), 500≤x<2000 (IV), and their sum (total: T). Maximum concentrations of PAH, BC, and TOC were observed in the smallest fraction (I) comprising silt and clay, irrespective of site or season. Results of the molecular diagnostic ratios and principal component analysis (PCA) identified coal, wood, biomass burning, and vehicular emissions as major sources of PAHs at all the three sites, while BC/TOC ratios pointed toward biomass combustion as the chief source of carbonaceous species. This work presents the first such rural-urban transect study considering PAH, BC, and TOC in soil. PMID:23133309

Do Mangroves Subsidize Carbon to Adjacent Mudflat Fish Communities?

NASA Astrophysics Data System (ADS)

Henkel, S.; Kasten, S.; Hartmann, J.; Staubwasser, M.; Hernandez, M. F.; West, L.; Midway, S. R.; Polito, M. J.

2017-12-01

Mangroves are often implicated as energetic sources for fisheries productivity. However, the validity of this connection still remains in contention. Stable isotopes may provide answers by tracking the use of specific basal carbon sources in fish and invertebrates living in mangrove-mudflat habitat mosaics. We analyzed 307 consumer samples representing n=44 fish and invertebrate species collected from mangrove forest creeks and adjacent mudflats in coastal Tanzania using bulk carbon and nitrogen stable isotope analysis. Given the proposed high productivity of mangrove habitats, we hypothesize that mudflat communities will have carbon stable isotope values similar to mangrove communities either through the flux of mangrove carbon into adjacent mudflats and/or via the movement of mudflat fish communities into and out of mangrove habitats. Alternatively, mangrove carbon is often refractory, which may result in mudflat communities with isotopic values that differ from those found in adjacent mangrove communities. This scenario would suggest limited carbon flow between mudflat and mangrove food webs and that the movement of fish into and out of mangrove habitats is related to shelter from predation more than feeding. Data analysis is ongoing to test these competing hypotheses. By understanding the contribution of mangrove carbon to adjacent habitats, managers in Tanzania can make better informed decisions regarding the protection of mangroves and the local fisheries, which are a crucial source of income and food.

Whole watershed quantification of net carbon fluxes by erosion and deposition within the Christina River Basin Critical Zone Observatory

NASA Astrophysics Data System (ADS)

Aufdenkampe, A. K.; Karwan, D. L.; Aalto, R. E.; Marquard, J.; Yoo, K.; Wenell, B.; Chen, C.

2012-12-01

We have proposed that the rate at which fresh, carbon-free minerals are delivered to and mix with fresh organic matter determines the rate of carbon preservation at a watershed scale (Aufdenkampe et al. 2011). Although many studies have examined the role of erosion in carbon balances, none consider that fresh carbon and fresh minerals interact. We believe that this mechanism may be a dominant sequestration process in watersheds with strong anthropogenic impacts. Our hypothesis - that the rate of mixing fresh carbon with fresh, carbon-free minerals is a primary control on watershed-scale carbon sequestration - is central to our Christina River Basin Critical Zone Observatory project (CRB-CZO, http://www.udel.edu/czo/). The Christina River Basin spans 1440 km2 from piedmont to Atlantic coastal plain physiographic provinces in the states of Pennsylvania and Delaware, and experienced intensive deforestation and land use beginning in the colonial period of the USA. Here we present a synthesis of multi-disciplinary data from the CRB-CZO on materials as they are transported from sapprolite to topsoils to colluvium to suspended solids to floodplains, wetlands and eventually to the Delaware Bay estuary. At the heart of our analysis is a spatially-integrated, flux-weighted comparison of the organic carbon to mineral surface area ratio (OC/SA) of erosion source materials versus transported and deposited materials. Because source end-members - such as forest topsoils, farmed topsoils, gullied subsoils and stream banks - represent a wide distribution of initial, pre-erosion OC/SA, we quantify source contributions using geochemical sediment fingerprinting approaches (Walling 2005). Analytes used for sediment fingerprinting include: total mineral elemental composition (including rare earth elements), fallout radioisotope activity for common erosion tracers (beryllium-7, beryllium-10, lead-210, cesium-137), particle size distribution and mineral specific surface area, in addition to organic carbon and nitrogen content with stable isotope (13C, 15N) and radiocarbon (14C) abundance to quantify OC/SA and organic carbon sources and mean age. We then use multivariate mixing model analysis to quantify the fractional contribution of each source end-member to each sample of suspended or deposited sediments. Last, we calculate a predicted OC/SA based on source end-member mixing and compare to the measured OC/SA to quantify net change in mineral complexed carbon.

Characterization of microwave plasma CVD of diamond by mass analysis and optical emission spectroscopy

NASA Astrophysics Data System (ADS)

Weimer, Wayne A.; Johnson, Curtis E.

1990-12-01

A microwave plasma enhanced chemical vapor deposition system is characterized using optical emission spectroscopy and mass spectrometry. CH4 CH2 CH4 and CO were used as carbon source gases. The effects of 02 addition to the feed gas is examined. Emission from CH in the plasma is observed and CH4 is a stable reaction product for all carbon source gases used. 02 is fully consumed and converted to H20 and CO. Emission from C is observed for all hydrocarbon gases when 02 is added but is absent when CO is the carbon source gas. Addition of 02 also dramatically affects the relative amount of reaction products as the carbon in the system is converted to CO. 1.

Analysis and Characterization of Organic Carbon in Early Holocene Wetland Paleosols using Ramped Pyrolysis 14C and Biomarkers

NASA Astrophysics Data System (ADS)

Vetter, L.; Schreiner, K. M.; Fernandez, A.; Rosenheim, B. E.; Tornqvist, T. E.

2014-12-01

Radiocarbon analyses are a key tool for quantifying the dynamics of carbon cycling and storage in both modern soils and Quaternary paleosols. Frequently, bulk 14C dates of paleosol organic carbon provide ages older than the time of soil burial, and 14C dates of geochemical fractions such as alkali and acid extracts (operationally defined as humic acids) can provide anomalously old ages when compared to coeval plant macrofossil dates. Ramped pyrolysis radiocarbon analysis of sedimentary organic material has been employed as a tool for investigating 14C age spectra in sediments with multiple organic carbon sources. Here we combine ramped pyrolysis 14C analysis and biomarker analysis (lignin-phenols and other cupric oxide products) to provide information on the source and diagenetic state of the paleosol organic carbon. We apply these techniques to immature early Holocene brackish wetland entisols from three sediment cores in southeastern Louisiana, along with overlying basal peats. Surprisingly, we find narrow 14C age spectra across all thermal aliquots from both paleosols and peats. The weighted bulk 14C ages from paleosols and overlying peats are within analytical error, and are comparable to independently analyzed 14C AMS dates from charcoal fragments and other plant macrofossils from each peat bed. Our results suggest high turnover rates of carbon in soils relative to input of exogenous carbon sources. These data raise broader questions about processes within the active soil and during pedogenesis and burial of paleosols that can effectively homogenize radiocarbon content in soils across the thermochemical spectrum. The concurrence of paleosol and peat 14C ages also suggests that, in the absence of peats with identifiable plant macrofossils, ramped pyrolysis 14C analyses of paleosols may be used to provide ages for sea-level indicators.

Identification of sources of tar balls deposited along the Goa coast, India, using fingerprinting techniques.

PubMed

Suneel, V; Vethamony, P; Zakaria, M P; Naik, B G; Prasad, K V S R

2013-05-15

Deposition of tar balls along the coast of Goa, India is a common phenomenon during the southwest monsoon. Representative tar ball samples collected from various beaches of Goa and one Bombay High (BH) crude oil sample were subjected to fingerprint analysis based on diagnostic ratios of n-alkane, biomarkers of pentacyclic tri-terpanes and compound specific stable carbon isotope (δ¹³C) analysis to confirm the source. The results were compared with the published data of Middle East Crude Oil (MECO) and South East Asian Crude Oil (SEACO). The results revealed that the tar balls were from tanker-wash derived spills. The study also confirmed that the source is not the BH, but SEACO. The present study suggests that the biomarkers of alkanes and hopanes coupled with stable carbon isotope analysis act as a powerful tool for tracing the source of tar balls, particularly when the source specific biomarkers fail to distinguish the source. Copyright © 2013 Elsevier Ltd. All rights reserved.

Seasonal variability of PM2.5 and PM10 composition and sources in an urban background site in Southern Italy.

PubMed

Cesari, D; De Benedetto, G E; Bonasoni, P; Busetto, M; Dinoi, A; Merico, E; Chirizzi, D; Cristofanelli, P; Donateo, A; Grasso, F M; Marinoni, A; Pennetta, A; Contini, D

2018-01-15

Comparison of fine and coarse fractions in terms of sources and dynamics is scarce in southeast Mediterranean countries; differences are relevant because of the importance of natural sources like sea spray and Saharan dust advection, because most of the monitoring networks are limited to PM 10 . In this work, the main seasonal variabilities of sources and processes involving fine and coarse PM (particulate matter) were studied at the Environmental-Climate Observatory of Lecce (Southern Italy). Simultaneous PM 2.5 and PM 10 samples were collected between July 2013 and July 2014 and chemically analysed to determine concentrations of several species: OC (organic carbon) and EC (elemental carbon) via thermo-optical analysis, 9 major ions via IC, and 23 metals via ICP-MS. Data was processed through mass closure analysis and Positive Matrix Factorization (PMF) receptor model characterizing seasonal variabilities of nine sources contributions. Organic and inorganic secondary aerosol accounts for 43% of PM 2.5 and 12% of PM 2.5-10 with small seasonal changes. SIA (secondary inorganic aerosol) seasonal pattern is opposite to that of SOC (secondary organic carbon). SOC is larger during the cold period, sulphate (the major contributor to SIA) is larger during summer. Two forms of nitrate were identified: NaNO 3 , correlated with chloride depletion and aging of sea-spray, mainly present in PM 2.5-10 ; NH 4 NO 3 more abundant in PM 2.5 . Biomass burning is a relevant source with larger contribution during autumn and winter because of the influence of domestic heating, however, is not negligible in spring and summer, because of the contributions of fires and agricultural practices. Mass closure analysis and PMF results identify two soil sources: crustal associated to long range transport and carbonates associated to local resuspended dust. Both sources contributes to the coarse fraction and have different dynamics with crustal source contributing mainly in high winds from SE conditions and carbonates during high winds from North direction. Copyright © 2017 Elsevier B.V. All rights reserved.

Nanophase Carbonates on Mars: Does Evolved Gas Analysis of Nanophase Carbonates Reveal a Large Organic Carbon Budget in Near-surface Martian Materials?

NASA Astrophysics Data System (ADS)

Archer, P. D., Jr.; Ming, D. W.; Sutter, B.; Niles, P. B.; Eigenbrode, J. L.

2015-12-01

Evolved Gas Analysis (EGA), which involves heating a sample and monitoring the gases released, has been performed on Mars by the Viking gas chromatography/mass spectrometry instruments, the Thermal and Evolved Gas Analyzer (TEGA) on the Phoenix lander, and the Sample Analysis at Mars (SAM) instrument on the Mars Science Laboratory. All of these instruments detected CO2 released during sample analysis at abundances of ~0.1 to 5 wt% assuming a carbonate source. The source of the CO2 can be constrained by evaluating the temperature of the gas release, a capability of both the TEGA and SAM instruments. The samples analyzed by SAM show that the majority of the CO2is released below 400 °C, much lower than traditional carbonate decomposition temperatures which can be as low as 400 °C for some siderites, with magnesites and calcites decomposing at even higher temperatures. In addition to mineralogy, decomposition temperature can depend on particle size (among other factors). If carbonates formed on Mars under low temperature and relative humidity conditions, the resulting small particle size (nanophase) carbonates could have low decomposition temperatures. We have found that calcite can be synthesized by exposing CaO to water vapor and CO2 and that the resulting mineral has an EGA peak of ~550 °C for CO2, which is about 200 °C lower than for other calcites. Work is ongoing to produce Fe and Mg-bearing carbonates using the same process. Current results suggest that nanophase calcium carbonates cannot explain the CO2 released from martian samples. If the decomposition temperatures of Mg and Fe-bearing nanophase carbonates are not significantly lower than 400 °C, other candidate sources include oxalates and carboxylated organic molecules. If present, the abundance of organic carbon in these samples could be > 0.1 wt % (1000s of ppm), a signficant departure from the paradigm of the organic-poor Mars based on Viking results.

Malate as a key carbon source of leaf dark-respired CO2 across different environmental conditions in potato plants.

PubMed

Lehmann, Marco M; Rinne, Katja T; Blessing, Carola; Siegwolf, Rolf T W; Buchmann, Nina; Werner, Roland A

2015-09-01

Dissimilation of carbon sources during plant respiration in support of metabolic processes results in the continuous release of CO2. The carbon isotopic composition of leaf dark-respired CO2 (i.e. δ (13) C R ) shows daily enrichments up to 14.8‰ under different environmental conditions. However, the reasons for this (13)C enrichment in leaf dark-respired CO2 are not fully understood, since daily changes in δ(13)C of putative leaf respiratory carbon sources (δ (13) C RS ) are not yet clear. Thus, we exposed potato plants (Solanum tuberosum) to different temperature and soil moisture treatments. We determined δ (13) C R with an in-tube incubation technique and δ (13) C RS with compound-specific isotope analysis during a daily cycle. The highest δ (13) C RS values were found in the organic acid malate under different environmental conditions, showing less negative values compared to δ (13) C R (up to 5.2‰) and compared to δ (13) C RS of soluble carbohydrates, citrate and starch (up to 8.8‰). Moreover, linear relationships between δ (13) C R and δ (13) C RS among different putative carbon sources were strongest for malate during daytime (r(2)=0.69, P≤0.001) and nighttime (r(2)=0.36, P≤0.001) under all environmental conditions. A multiple linear regression analysis revealed δ (13) C RS of malate as the most important carbon source influencing δ (13) C R . Thus, our results strongly indicate malate as a key carbon source of (13)C enriched dark-respired CO2 in potato plants, probably driven by an anapleurotic flux replenishing intermediates of the Krebs cycle. © The Author 2015. Published by Oxford University Press on behalf of the Society for Experimental Biology.

The carbon balance of reducing wildfire risk and restoring process: an analysis of 10-year post-treatment carbon dynamics in a mixed-conifer forest

Treesearch

Morgan L. Wiechmann; Matthew D. Hurteau; Malcolm P. North; George W. Koch; Lucie Jerabkova

2015-01-01

Forests sequester carbon from the atmosphere, helping mitigate climate change. In fire-prone forests, burn events result in direct and indirect emissions of carbon. High fire-induced tree mortality can cause a transition from a carbon sink to source, but thinning and prescribed burning can reduce fire severity and carbon loss when wildfire occurs. However, treatment...

Strong linkage of polar cod (Boreogadus saida) to sea ice algae-produced carbon: Evidence from stomach content, fatty acid and stable isotope analyses

NASA Astrophysics Data System (ADS)

Kohlbach, Doreen; Schaafsma, Fokje L.; Graeve, Martin; Lebreton, Benoit; Lange, Benjamin Allen; David, Carmen; Vortkamp, Martina; Flores, Hauke

2017-03-01

The polar cod (Boreogadus saida) is considered an ecological key species, because it reaches high stock biomasses and constitutes an important carbon source for seabirds and marine mammals in high-Arctic ecosystems. Young polar cod (1-2 years) are often associated with the underside of sea ice. To evaluate the impact of changing Arctic sea ice habitats on polar cod, we examined the diet composition and quantified the contribution of ice algae-produced carbon (αIce) to the carbon budget of polar cod. Young polar cod were sampled in the ice-water interface layer in the central Arctic Ocean during late summer 2012. Diets and carbon sources of these fish were examined using 4 approaches: (1) stomach content analysis, (2) fatty acid (FA) analysis, (3) bulk nitrogen and carbon stable isotope analysis (BSIA) and (4) compound-specific stable isotope analysis (CSIA) of FAs. The ice-associated (sympagic) amphipod Apherusa glacialis dominated the stomach contents by mass, indicating a high importance of sympagic fauna in young polar cod diets. The biomass of food measured in stomachs implied constant feeding at daily rates of ∼1.2% body mass per fish, indicating the potential for positive growth. FA profiles of polar cod indicated that diatoms were the primary carbon source, indirectly obtained via amphipods and copepods. The αIce using bulk isotope data from muscle was estimated to be >90%. In comparison, αIce based on CSIA ranged from 34 to 65%, with the highest estimates from muscle and the lowest from liver tissue. Overall, our results indicate a strong dependency of polar cod on ice-algae produced carbon. This suggests that young polar cod may be particularly vulnerable to changes in the distribution and structure of sea ice habitats. Due to the ecological key role of polar cod, changes at the base of the sea ice-associated food web are likely to affect the higher trophic levels of high-Arctic ecosystems.

Fire debris analysis for forensic fire investigation using laser induced breakdown spectroscopy (LIBS)

NASA Astrophysics Data System (ADS)

Choi, Soojin; Yoh, Jack J.

2017-08-01

The possibility verification of the first attempt to apply LIBS to arson investigation was performed. LIBS has capabilities for real time in-situ analysis and depth profiling. It can provide valuable information about the fire debris that are complementary to the classification of original sample components and combustion residues. In this study, fire debris was analyzed to determine the ignition source and existence of a fire accelerant using LIBS spectra and depth profiling analysis. Fire debris chemical composition and carbon layer thickness determines the possible ignition source while the carbon layer thickness of combusted samples represents the degree of sample carbonization. When a sample is combusted with fire accelerants, a thicker carbon layer is formed because the burning rate is increased. Therefore, depth profiling can confirm the existence of combustion accelerants, which is evidence of arson. Also investigation of fire debris by depth profiling is still possible when a fire is extinguished with water from fire hose. Such data analysis and in-situ detection of forensic signals via the LIBS may assist fire investigation at crime scenes.

De novo biosynthesis of sterols and fatty acids in the Trypanosoma brucei procyclic form: Carbon source preferences and metabolic flux redistributions

PubMed Central

Bouyssou, Guillaume; Allmann, Stefan; Kiema, Tiila-Riikka; Biran, Marc; Plazolles, Nicolas; Dittrich-Domergue, Franziska; Crouzols, Aline; Wierenga, Rik K.; Rotureau, Brice; Moreau, Patrick

2018-01-01

De novo biosynthesis of lipids is essential for Trypanosoma brucei, a protist responsible for the sleeping sickness. Here, we demonstrate that the ketogenic carbon sources, threonine, acetate and glucose, are precursors for both fatty acid and sterol synthesis, while leucine only contributes to sterol production in the tsetse fly midgut stage of the parasite. Degradation of these carbon sources into lipids was investigated using a combination of reverse genetics and analysis of radio-labelled precursors incorporation into lipids. For instance, (i) deletion of the gene encoding isovaleryl-CoA dehydrogenase, involved in the leucine degradation pathway, abolished leucine incorporation into sterols, and (ii) RNAi-mediated down-regulation of the SCP2-thiolase gene expression abolished incorporation of the three ketogenic carbon sources into sterols. The SCP2-thiolase is part of a unidirectional two-step bridge between the fatty acid precursor, acetyl-CoA, and the precursor of the mevalonate pathway leading to sterol biosynthesis, 3-hydroxy-3-methylglutaryl-CoA. Metabolic flux through this bridge is increased either in the isovaleryl-CoA dehydrogenase null mutant or when the degradation of the ketogenic carbon sources is affected. We also observed a preference for fatty acids synthesis from ketogenic carbon sources, since blocking acetyl-CoA production from both glucose and threonine abolished acetate incorporation into sterols, while incorporation of acetate into fatty acids was increased. Interestingly, the growth of the isovaleryl-CoA dehydrogenase null mutant, but not that of the parental cells, is interrupted in the absence of ketogenic carbon sources, including lipids, which demonstrates the essential role of the mevalonate pathway. We concluded that procyclic trypanosomes have a strong preference for fatty acid versus sterol biosynthesis from ketogenic carbon sources, and as a consequence, that leucine is likely to be the main source, if not the only one, used by trypanosomes in the infected insect vector digestive tract to feed the mevalonate pathway. PMID:29813135

Whole Watershed Quantification of Net Carbon Fluxes by Erosion and Deposition within the Christina River Basin Critical Zone Observatory

NASA Astrophysics Data System (ADS)

Aufdenkampe, A. K.; Karwan, D. L.; Aalto, R. E.; Marquard, J.; Yoo, K.; Wenell, B.; Chen, C.

2013-12-01

We have proposed that the rate at which fresh, carbon-free minerals are delivered to and mix with fresh organic matter determines the rate of carbon preservation at a watershed scale (Aufdenkampe et al. 2011). Although many studies have examined the role of erosion in carbon balances, none consider that fresh carbon and fresh minerals interact. We believe that this mechanism may be a dominant sequestration process in watersheds with strong anthropogenic impacts. Our hypothesis - that the rate of mixing fresh carbon with fresh, carbon-free minerals is a primary control on watershed-scale carbon sequestration - is central to our Christina River Basin Critical Zone Observatory project (CRB-CZO, http://www.udel.edu/czo/). The Christina River Basin spans 1440 km2 from piedmont to Atlantic coastal plain physiographic provinces in the states of Pennsylvania and Delaware, and experienced intensive deforestation and land use beginning in the colonial period of the USA. Here we present a synthesis of multi-disciplinary data from the CRB-CZO on materials as they are transported from sapprolite to topsoils to colluvium to suspended solids to floodplains, wetlands and eventually to the Delaware Bay estuary. At the heart of our analysis is a spatially-integrated, flux-weighted comparison of the organic carbon to mineral surface area ratio (OC/SA) of erosion source materials versus transported and deposited materials. Because source end-members - such as forest topsoils, farmed topsoils, gullied subsoils and stream banks - represent a wide distribution of initial, pre-erosion OC/SA, we quantify source contributions using geochemical sediment fingerprinting approaches (Walling 2005). Analytes used for sediment fingerprinting include: total mineral elemental composition (including rare earth elements), fallout radioisotope activity for common erosion tracers (beryllium-7, beryllium-10, lead-210, cesium-137), particle size distribution and mineral specific surface area, in addition to organic carbon and nitrogen content with stable isotope (13C, 15N) and radiocarbon (14C) abundance to quantify OC/SA and organic carbon sources and mean age. We then use multivariate mixing model analysis to quantify the fractional contribution of each source end-member to each sample of suspended or deposited sediments. Last, we calculate a predicted OC/SA based on source end-member mixing and compare to the measured OC/SA to quantify net change in mineral complexed carbon. Aufdenkampe, A.K. et al. Riverine coupling of biogeochemical cycles between land, oceans, and atmosphere. Frontiers Ecol. Environ. 9, 53-60 (2011). Walling, D. E. Tracing suspended sediment sources in catchments and river systems. Sci. Total Environ. 34, 159-184 (2005).

[Carbon Source Utilization Characteristics of Soil Microbial Community for Apple Orchard with Interplanting Herbage].

PubMed

Du, Yi-fei; Fang, Kai-kai; Wang, Zhi-kang; Li, Hui-ke; Mao, Peng-juan; Zhang, Xiang-xu; Wang, Jing

2015-11-01

As soil fertility in apple orchard with clean tillage is declined continuously, interplanting herbage in orchard, which is a new orchard management model, plays an important role in improving orchard soil conditions. By using biolog micro-plate technique, this paper studied the functional diversity of soil microbial community under four species of management model in apple orchards, including clear tillage model, interplanting white clover model, interplanting small crown flower model and interplanting cocksfoot model, and the carbon source utilization characteristics of microbial community were explored, which could provide a reference for revealing driving mechanism of ecological process of orchard soil. The results showed that the functional diversity of microbial community had a significant difference among different treatments and in the order of white clover > small crown flower > cocksfoot > clear tillage. The correlation analysis showed that the average well color development (AWCD), Shannon index, Richness index and McIntosh index were all highly significantly positively correlated with soil organic carbon, total nitrogen, microbial biomass carbon, and Shannon index was significantly positively correlated with soil pH. The principal component analysis and the fingerprints of the physiological carbon metabolism of the microbial community demonstrated that grass treatments improved carbon source metabolic ability of soil microbial community, and the soil microbes with perennial legumes (White Clover and small crown flower) had a significantly higher utilization rate in carbohydrates (N-Acetyl-D-Glucosamine, D-Mannitol, β-Methyl-D-Glucoside), amino acids (Glycyl-L-Glutamic acid, L-Serine, L-Threonine) and polymers (Tween 40, Glycogen) than the soil microbes with clear tillage. It was considered that different treatments had the unique microbial community structure and peculiar carbon source utilization characteristics.

Alternative industrial carbon emissions benchmark based on input-output analysis

NASA Astrophysics Data System (ADS)

Han, Mengyao; Ji, Xi

2016-12-01

Some problems exist in the current carbon emissions benchmark setting systems. The primary consideration for industrial carbon emissions standards highly relate to direct carbon emissions (power-related emissions) and only a portion of indirect emissions are considered in the current carbon emissions accounting processes. This practice is insufficient and may cause double counting to some extent due to mixed emission sources. To better integrate and quantify direct and indirect carbon emissions, an embodied industrial carbon emissions benchmark setting method is proposed to guide the establishment of carbon emissions benchmarks based on input-output analysis. This method attempts to link direct carbon emissions with inter-industrial economic exchanges and systematically quantifies carbon emissions embodied in total product delivery chains. The purpose of this study is to design a practical new set of embodied intensity-based benchmarks for both direct and indirect carbon emissions. Beijing, at the first level of carbon emissions trading pilot schemes in China, plays a significant role in the establishment of these schemes and is chosen as an example in this study. The newly proposed method tends to relate emissions directly to each responsibility in a practical way through the measurement of complex production and supply chains and reduce carbon emissions from their original sources. This method is expected to be developed under uncertain internal and external contexts and is further expected to be generalized to guide the establishment of industrial benchmarks for carbon emissions trading schemes in China and other countries.

Integrated transcriptome sequencing and dynamic analysis reveal carbon source partitioning between terpenoid and oil accumulation in developing Lindera glauca fruits.

PubMed

Niu, Jun; Chen, Yinlei; An, Jiyong; Hou, Xinyu; Cai, Jian; Wang, Jia; Zhang, Zhixiang; Lin, Shanzhi

2015-10-08

Lindera glauca fruits (LGF) with the abundance of terpenoid and oil has emerged as a novel specific material for industrial and medicinal application in China, but the complex regulatory mechanisms of carbon source partitioning into terpenoid biosynthetic pathway (TBP) and oil biosynthetic pathway (OBP) in developing LGF is still unknown. Here we perform the analysis of contents and compositions of terpenoid and oil from 7 stages of developing LGF to characterize a dramatic difference in temporal accumulative patterns. The resulting 3 crucial samples at 50, 125 and 150 days after flowering (DAF) were selected for comparative deep transcriptome analysis. By Illumina sequencing, the obtained approximately 81 million reads are assembled into 69,160 unigenes, among which 174, 71, 81 and 155 unigenes are implicated in glycolysis, pentose phosphate pathway (PPP), TBP and OBP, respectively. Integrated differential expression profiling and qRT-PCR, we specifically characterize the key enzymes and transcription factors (TFs) involved in regulating carbon allocation ratios for terpenoid or oil accumulation in developing LGF. These results contribute to our understanding of the regulatory mechanisms of carbon source partitioning between terpenoid and oil in developing LGF, and to the improvement of resource utilization and molecular breeding for L. glauca.

The carbon chemistry of the moon.

NASA Technical Reports Server (NTRS)

Eglinton, G.; Maxwell, J. R.; Pillinger, C. T.

1972-01-01

The analysis of lunar samples has shown that the carbon chemistry of the moon is entirely different from the carbon chemistry of the earth. Lunar carbon chemistry is more closely related to cosmic physics than to conventional organic chemistry. Sources of carbon on the moon are considered, giving attention to meteorites and the solar wind. The approaches used in the analysis of the samples are discussed, taking into account the method of gas chromatography employed and procedures used by bioscience investigators in the study of the lunar fines. The presence of indigenous methane and carbide in the lunar fines was established. Reactions and processes taking place on the lunar surface are discussed.

Carbon Nanotubes, Nanocrystal Forms, and Complex Nanoparticle Aggregates in common fuel-gas combustion sources and the ambient air

NASA Astrophysics Data System (ADS)

Murr, L. E.; Bang, J. J.; Esquivel, E. V.; Guerrero, P. A.; Lopez, D. A.

2004-06-01

Aggregated multiwall carbon nanotubes (with diameters ranging from ˜3 to 30nm) and related carbon nanocrystal forms ranging in size from 0.4 to 2 μm (average diameter) have been collected in the combustion streams for methane/air, natural gas/air, and propane gas/air flames using a thermal precipitator. Individual particle aggregates were collected on carbon/formvar-coated 3mm nickel grids and examined in a transmission electron microscope, utilizing bright-field imaging, selected-area electron diffraction analysis, and energy-dispersive X-ray spectrometry techniques. The natural gas and propane gas sources were domestic (kitchen) stoves, and similar particle aggregates collected in the outdoor air were correspondingly identified as carbon nanocrystal aggregates and sometimes more complex aggregates of silica nanocrystals intermixed with the carbon nanotubes and other carbon nanocrystals. Finally, and in light of the potential for methane-series gas burning as major sources of carbon nanocrystal aggregates in both the indoor and outdoor air, data for natural gas consumption and corresponding asthma deaths and incidence are examined with a degree of speculation regarding any significance in the correlations.

Quantifying terrestrial ecosystem carbon dynamics in the Jinsha watershed, Upper Yangtze, China from 1975 to 2000

USGS Publications Warehouse

Zhao, Shuqing; Liu, Shuguang; Yin, Runsheng; Li, Zhengpeng; Deng, Yulin; Tan, Kun; Deng, Xiangzheng; Rothstein, David; Qi, Jiaguo; Yin, Runsheng

2009-01-01

Quantifying the spatial and temporal dynamics of carbon stocks in terrestrial ecosystems and carbon fluxes between the terrestrial biosphere and the atmosphere is critical to our understanding of regional patterns of carbon storage and loss. Here we use the General Ensemble Biogeochemical Modeling System to simulate the terrestrial ecosystem carbon dynamics in the Jinsha watershed of China's upper Yangtze basin from 1975 to 2000, based on unique combinations of spatial and temporal dynamics of major driving forces, such as climate, soil properties, nitrogen deposition, and land use and land cover changes. Our analysis demonstrates that the Jinsha watershed ecosystems acted as a carbon sink during the period of 1975–2000, with an average rate of 0.36 Mg/ha/yr, primarily resulting from regional climate variation and local land use and land cover change. Vegetation biomass accumulation accounted for 90.6% of the sink, while soil organic carbon loss before 1992 led to lower net gain of carbon in the watershed, and after that soils became a small sink. Ecosystem carbon sinks/source pattern showed a high degree of spatial heterogeneity, Carbon sinks were associated with forest areas without disturbances, whereas carbon Sources were primarily caused by stand-replacing disturbances. This highlights the importance of land-use history in determining the regional carbon sinks/source pattern.

Growth versus metabolic tissue replacement in mouse tissues determined by stable carbon and nitrogen isotope analysis

NASA Astrophysics Data System (ADS)

Macavoy, S. E.; Jamil, T.; Macko, S. A.; Arneson, L. S.

2003-12-01

Stable isotope analysis is becoming an extensively used tool in animal ecology. The isotopes most commonly used for analysis in terrestrial systems are those of carbon and nitrogen, due to differential carbon fractionation in C3 and C4 plants, and the approximately 3‰ enrichment in 15N per trophic level. Although isotope signatures in animal tissues presumably reflect the local food web, analysis is often complicated by differential nutrient routing and fractionation by tissues, and by the possibility that large organisms are not in isotopic equilibrium with the foods available in their immediate environment. Additionally, the rate at which organisms incorporate the isotope signature of a food through both growth and metabolic tissue replacement is largely unknown. In this study we have assessed the rate of carbon and nitrogen isotopic turnover in liver, muscle and blood in mice following a diet change. By determining growth rates, we were able to determine the proportion of tissue turnover caused by growth versus that caused by metabolic tissue replacement. Growth was found to account for approximately 10% of observed tissue turnover in sexually mature mice (Mus musculus). Blood carbon was found to have the shortest half-life (16.9 days), followed by muscle (24.7 days). Liver carbon turnover was not as well described by the exponential decay equations as other tissues. However, substantial liver carbon turnover was observed by the 28th day after diet switch. Surprisingly, these tissues primarily reflect the carbon signature of the protein, rather than carbohydrate, source in their diet. The nitrogen signature in all tissues was enriched by 3 - 5‰ over their dietary protein source, depending on tissue type, and the isotopic turnover rates were comparable to those observed in carbon.

Aerosol carbon isotope composition over Baltic Sea

NASA Astrophysics Data System (ADS)

Garbaras, Andrius; Pabedinskas, Algirdas; Masalaite, Agne; Petelski, Tomasz; Gorokhova, Elena; Sapolaite, Justina; Ezerinskis, Zilvinas; Remeikis, Vidmantas

2017-04-01

Particulate carbonaceous matter is significant contributor to ambient particulate matter originating from intervening sources which contribution is difficult to quantify due to source diversity, chemical complexity and processes during atmospheric transport. Carbon isotope analysis can be extremely useful in source apportionment of organic matter due to the unique isotopic signatures associated with anthropocentric (fossil fuel), continental (terrestrial plants) and marine sources, and is particularly effective when these sources are mixed (Ceburnis et al., 2011;Ceburnis et al., 2016). We will present the isotope ratio measurement results of aerosol collected during the cruise in the Baltic Sea. Sampling campaign of PM10 and size segregated aerosol particles was performed on the R/V "Oceania" in October 2015. Air mass back trajectories were prevailing both from the continental and marine areas during the sampling period. The total carbon concentration varied from 1 µg/m3 to 8 µg/m3. Two end members (δ13C = -25‰ and δ13C = -28 ‰ ) were established from the total stable carbon isotope analysis in PM10 fraction. δ13C analysis in size segregated aerosol particles revealed δ13C values being highest in the 1 - 2.5 µm range (δ13C = -24.9 ‰ ) during continental transport, while lowest TC δ13C values (δ13C ≈ -27 ‰ ) were detected in the size range D50 <1 µm during stormy weather when air mass trajectory prevailed from the western direction. These measurements revealed that simplified isotope mixing model can not be applied for the aerosol source apportionment (Masalaite et al., 2015) in the perturbed marine environment. Additionally, concentration of bacteria and fungi were measured in size segregated and PM10 aerosol fraction. We were able to relate aerosol source δ13C end members with the abundance of bacteria and fungi over Baltic Sea combining air mass trajectories, stable isotope data, fungi and bacteria concentrations. Ceburnis, D., Garbaras, A., Szidat, S., Rinaldi, M., Fahrni, S., Perron, N., Wacker, L., Leinert, S., Remeikis, V., and Facchini, M.: Quantification of the carbonaceous matter origin in submicron marine aerosol by 13 C and 14 C isotope analysis, Atmospheric Chemistry and Physics, 11, 8593-8606, 2011. Ceburnis, D., Masalaite, A., Ovadnevaite, J., Garbaras, A., Remeikis, V., Maenhaut, W., Claeys, M., Sciare, J., Baisnée, D., and O'Dowd, C. D.: Stable isotopes measurements reveal dual carbon pools contributing to organic matter enrichment in marine aerosol, Scientific Reports, 6, 2016. Masalaite, A., Remeikis, V., Garbaras, A., Dudoitis, V., Ulevicius, V., and Ceburnis, D.: Elucidating carbonaceous aerosol sources by the stable carbon δ13C TC ratio in size-segregated particles, Atmospheric Research, 158, 1-12, 2015.

Comparative genomic analysis of carbon and nitrogen assimilation mechanisms in three indigenous bioleaching bacteria: predictions and validations

PubMed Central

Levicán, Gloria; Ugalde, Juan A; Ehrenfeld, Nicole; Maass, Alejandro; Parada, Pilar

2008-01-01

Background Carbon and nitrogen fixation are essential pathways for autotrophic bacteria living in extreme environments. These bacteria can use carbon dioxide directly from the air as their sole carbon source and can use different sources of nitrogen such as ammonia, nitrate, nitrite, or even nitrogen from the air. To have a better understanding of how these processes occur and to determine how we can make them more efficient, a comparative genomic analysis of three bioleaching bacteria isolated from mine sites in Chile was performed. This study demonstrated that there are important differences in the carbon dioxide and nitrogen fixation mechanisms among bioleaching bacteria that coexist in mining environments. Results In this study, we probed that both Acidithiobacillus ferrooxidans and Acidithiobacillus thiooxidans incorporate CO2 via the Calvin-Benson-Bassham cycle; however, the former bacterium has two copies of the Rubisco type I gene whereas the latter has only one copy. In contrast, we demonstrated that Leptospirillum ferriphilum utilizes the reductive tricarboxylic acid cycle for carbon fixation. Although all the species analyzed in our study can incorporate ammonia by an ammonia transporter, we demonstrated that Acidithiobacillus thiooxidans could also assimilate nitrate and nitrite but only Acidithiobacillus ferrooxidans could fix nitrogen directly from the air. Conclusion The current study utilized genomic and molecular evidence to verify carbon and nitrogen fixation mechanisms for three bioleaching bacteria and provided an analysis of the potential regulatory pathways and functional networks that control carbon and nitrogen fixation in these microorganisms. PMID:19055775

A fungal transcription factor essential for starch degradation affects integration of carbon and nitrogen metabolism

DOE PAGES

Xiong, Yi; Wu, Vincent W.; Lubbe, Andrea; ...

2017-05-03

In Neurospora crassa, the transcription factor COL-26 functions as a regulator of glucose signaling and metabolism. Its loss leads to resistance to carbon catabolite repression. Here, we report that COL-26 is necessary for the expression of amylolytic genes in N. crassa and is required for the utilization of maltose and starch. Additionally, the Δcol-26 mutant shows growth defects on preferred carbon sources, such as glucose, an effect that was alleviated if glutamine replaced ammonium as the primary nitrogen source. This rescue did not occur when maltose was used as a sole carbon source. Transcriptome and metabolic analyses of the Δcol-26more » mutant relative to its wild type parental strain revealed that amino acid and nitrogen metabolism, the TCA cycle and GABA shunt were adversely affected. Phylogenetic analysis showed a single col-26 homolog in Sordariales, Ophilostomatales, and the Magnaporthales, but an expanded number of col-26 homologs in other filamentous fungal species. Deletion of the closest homolog of col-26 in Trichoderma reesei, bglR, resulted in a mutant with similar preferred carbon source growth deficiency, and which was alleviated if glutamine was the sole nitrogen source, suggesting conservation of COL-26 and BglR function. Our finding provides novel insight into the role of COL-26 for utilization of starch and in integrating carbon and nitrogen metabolism for balanced metabolic activities for optimal carbon and nitrogen distribution.« less

A fungal transcription factor essential for starch degradation affects integration of carbon and nitrogen metabolism

DOE Office of Scientific and Technical Information (OSTI.GOV)

Xiong, Yi; Wu, Vincent W.; Lubbe, Andrea

In Neurospora crassa, the transcription factor COL-26 functions as a regulator of glucose signaling and metabolism. Its loss leads to resistance to carbon catabolite repression. Here, we report that COL-26 is necessary for the expression of amylolytic genes in N. crassa and is required for the utilization of maltose and starch. Additionally, the Δcol-26 mutant shows growth defects on preferred carbon sources, such as glucose, an effect that was alleviated if glutamine replaced ammonium as the primary nitrogen source. This rescue did not occur when maltose was used as a sole carbon source. Transcriptome and metabolic analyses of the Δcol-26more » mutant relative to its wild type parental strain revealed that amino acid and nitrogen metabolism, the TCA cycle and GABA shunt were adversely affected. Phylogenetic analysis showed a single col-26 homolog in Sordariales, Ophilostomatales, and the Magnaporthales, but an expanded number of col-26 homologs in other filamentous fungal species. Deletion of the closest homolog of col-26 in Trichoderma reesei, bglR, resulted in a mutant with similar preferred carbon source growth deficiency, and which was alleviated if glutamine was the sole nitrogen source, suggesting conservation of COL-26 and BglR function. Our finding provides novel insight into the role of COL-26 for utilization of starch and in integrating carbon and nitrogen metabolism for balanced metabolic activities for optimal carbon and nitrogen distribution.« less

A fungal transcription factor essential for starch degradation affects integration of carbon and nitrogen metabolism

PubMed Central

Xiong, Yi; Qin, Lina; Kennedy, Megan; Bauer, Diane; Barry, Kerrie; Northen, Trent R.; Grigoriev, Igor V.

2017-01-01

In Neurospora crassa, the transcription factor COL-26 functions as a regulator of glucose signaling and metabolism. Its loss leads to resistance to carbon catabolite repression. Here, we report that COL-26 is necessary for the expression of amylolytic genes in N. crassa and is required for the utilization of maltose and starch. Additionally, the Δcol-26 mutant shows growth defects on preferred carbon sources, such as glucose, an effect that was alleviated if glutamine replaced ammonium as the primary nitrogen source. This rescue did not occur when maltose was used as a sole carbon source. Transcriptome and metabolic analyses of the Δcol-26 mutant relative to its wild type parental strain revealed that amino acid and nitrogen metabolism, the TCA cycle and GABA shunt were adversely affected. Phylogenetic analysis showed a single col-26 homolog in Sordariales, Ophilostomatales, and the Magnaporthales, but an expanded number of col-26 homologs in other filamentous fungal species. Deletion of the closest homolog of col-26 in Trichoderma reesei, bglR, resulted in a mutant with similar preferred carbon source growth deficiency, and which was alleviated if glutamine was the sole nitrogen source, suggesting conservation of COL-26 and BglR function. Our finding provides novel insight into the role of COL-26 for utilization of starch and in integrating carbon and nitrogen metabolism for balanced metabolic activities for optimal carbon and nitrogen distribution. PMID:28467421

Integrated Mid-Continent Carbon Capture, Sequestration & Enhanced Oil Recovery Project

DOE Office of Scientific and Technical Information (OSTI.GOV)

Brian McPherson

2010-08-31

A consortium of research partners led by the Southwest Regional Partnership on Carbon Sequestration and industry partners, including CAP CO2 LLC, Blue Source LLC, Coffeyville Resources, Nitrogen Fertilizers LLC, Ash Grove Cement Company, Kansas Ethanol LLC, Headwaters Clean Carbon Services, Black & Veatch, and Schlumberger Carbon Services, conducted a feasibility study of a large-scale CCS commercialization project that included large-scale CO{sub 2} sources. The overall objective of this project, entitled the 'Integrated Mid-Continent Carbon Capture, Sequestration and Enhanced Oil Recovery Project' was to design an integrated system of US mid-continent industrial CO{sub 2} sources with CO{sub 2} capture, and geologicmore » sequestration in deep saline formations and in oil field reservoirs with concomitant EOR. Findings of this project suggest that deep saline sequestration in the mid-continent region is not feasible without major financial incentives, such as tax credits or otherwise, that do not exist at this time. However, results of the analysis suggest that enhanced oil recovery with carbon sequestration is indeed feasible and practical for specific types of geologic settings in the Midwestern U.S.« less

Proteome Analyses of Hydrogen-producing Hyperthermophilic Archaeon Thermococcus onnurineus NA1 in Different One-carbon Substrate Culture Conditions*

PubMed Central

Moon, Yoon-Jung; Kwon, Joseph; Yun, Sung-Ho; Lim, Hye Li; Kim, Min-Sik; Kang, Sung Gyun; Lee, Jung-Hyun; Choi, Jong-Soon; Kim, Seung Il; Chung, Young-Ho

2012-01-01

Thermococcus onnurineus NA1, a sulfur-reducing hyperthermophilic archaeon, is capable of H2-producing growth, considered to be hydrogenogenic carboxydotrophy. Utilization of formate as a sole energy source has been well studied in T. onnurineus NA1. However, whether formate can be used as its carbon source remains unknown. To obtain a global view of the metabolic characteristics of H2-producing growth, a quantitative proteome analysis of T. onnurineus NA1 grown on formate, CO, and starch was performed by combining one-dimensional SDS-PAGE with nano UPLC-MSE. A total of 587 proteins corresponding to 29.7% of the encoding genes were identified, and the major metabolic pathways (especially energy metabolism) were characterized at the protein level. Expression of glycolytic enzymes was common but more highly induced in starch-grown cells. In contrast, enzymes involved in key steps of the gluconeogenesis and pentose phosphate pathways were strongly up-regulated in formate-grown cells, suggesting that formate could be utilized as a carbon source by T. onnurineus NA1. In accordance with the genomic analysis, comprehensive proteomic analysis also revealed a number of hydrogenase clusters apparently associated with formate metabolism. On the other hand, CODH and CO-induced hydrogenases belonging to the Hyg4-II cluster, as well as sulfhydrogenase-I and Mbx, were prominently expressed during CO culture. Our data suggest that CO can be utilized as a sole energy source for H2 production via an electron transport mechanism and that CO2 produced from catabolism or CO oxidation by CODH and CO-induced hydrogenases may subsequently be assimilated into the organic carbon. Overall, proteomic comparison of formate- and CO-grown cells with starch-grown cells revealed that a single carbon compound, such as formate and CO, can be utilized as an efficient substrate to provide cellular carbon and/or energy by T. onnurineus NA1. PMID:22232491

Proteome-wide quantitative multiplexed profiling of protein expression: carbon-source dependency in Saccharomyces cerevisiae

PubMed Central

Paulo, Joao A.; O’Connell, Jeremy D.; Gaun, Aleksandr; Gygi, Steven P.

2015-01-01

The global proteomic alterations in the budding yeast Saccharomyces cerevisiae due to differences in carbon sources can be comprehensively examined using mass spectrometry–based multiplexing strategies. In this study, we investigate changes in the S. cerevisiae proteome resulting from cultures grown in minimal media using galactose, glucose, or raffinose as the carbon source. We used a tandem mass tag 9-plex strategy to determine alterations in relative protein abundance due to a particular carbon source, in triplicate, thereby permitting subsequent statistical analyses. We quantified more than 4700 proteins across all nine samples; 1003 proteins demonstrated statistically significant differences in abundance in at least one condition. The majority of altered proteins were classified as functioning in metabolic processes and as having cellular origins of plasma membrane and mitochondria. In contrast, proteins remaining relatively unchanged in abundance included those having nucleic acid–related processes, such as transcription and RNA processing. In addition, the comprehensiveness of the data set enabled the analysis of subsets of functionally related proteins, such as phosphatases, kinases, and transcription factors. As a resource, these data can be mined further in efforts to understand better the roles of carbon source fermentation in yeast metabolic pathways and the alterations observed therein, potentially for industrial applications, such as biofuel feedstock production. PMID:26399295

Interface for the rapid analysis of liquid samples by accelerator mass spectrometry

DOEpatents

Turteltaub, Kenneth; Ognibene, Ted; Thomas, Avi; Daley, Paul F; Salazar Quintero, Gary A; Bench, Graham

2014-02-04

An interface for the analysis of liquid sample having carbon content by an accelerator mass spectrometer including a wire, defects on the wire, a system for moving the wire, a droplet maker for producing droplets of the liquid sample and placing the droplets of the liquid sample on the wire in the defects, a system that converts the carbon content of the droplets of the liquid sample to carbon dioxide gas in a helium stream, and a gas-accepting ion source connected to the accelerator mass spectrometer that receives the carbon dioxide gas of the sample in a helium stream and introduces the carbon dioxide gas of the sample into the accelerator mass spectrometer.

Bifunctional catalyst of graphite-encapsulated iron compound nanoparticle for magnetic carbon nanotubes growth by chemical vapor deposition

NASA Astrophysics Data System (ADS)

Saraswati, Teguh Endah; Prasiwi, Oktaviana Dewi Indah; Masykur, Abu; Anwar, Miftahul

2017-01-01

The carbon nanotube has widely taken great attractive in carbon nanomaterial research and application. One of its preparation methods is catalytic chemical vapor deposition (CCVD) using catalyst i.e. iron, nickel, etc. Generally, except the catalyst, carbon source gasses as the precursor are still required. Here, we report the use of the bifunctional material of Fe3O4/C which has an incorporated core/shell structures of carbon-encapsulated iron compound nanoparticles. The bifunctional catalyst was prepared by submerged arc discharge that simply performed using carbon and carbon/iron oxide electrodes in ethanol 50%. The prepared material was then used as a catalyst in thermal chemical vapor deposition at 800°C flown with ethanol vapor as the primer carbon source in a low-pressure condition. This catalyst might play a dual role as a catalyst and secondary carbon source for growing carbon nanotubes at the time. The synthesized products were characterized by transmission electron microscopy (TEM) and X-ray diffraction (XRD) analysis. The successful formation of carbon nanotubes was assigned by the shifted X-ray diffracted peak of carbon C(002), the iron oxides of Fe3O4 and γ-Fe2O3, and the other peaks which were highly considered to the other carbon allotropes with sp2 hybridization structures. The other assignment was studied by electron microscopy which successfully observed the presence of single-wall carbon nanotubes. In addition, the as-prepared carbon nanotubes have a magnetic property which was induced by the remaining of metal catalyst inside the CNT.

Implication of using different carbon sources for denitrification in wastewater treatments.

PubMed

Cherchi, Carla; Onnis-Hayden, Annalisa; El-Shawabkeh, Ibrahim; Gu, April Z

2009-08-01

Application of external carbon sources for denitrification becomes necessary for wastewater treatment plants that have to meet very stringent effluent nitrogen limits (e.g., 3 to 5 mgTN/L). In this study, we evaluated and compared three carbon sources--MicroC (Environmental Operating Solutions, Bourne, Massachusetts), methanol, and acetate-in terms of their denitrification rates and kinetics, effect on overall nitrogen removal performance, and microbial community structure of carbon-specific denitrifying enrichments. Denitrification rates and kinetics were determined with both acclimated and non-acclimated biomass, obtained from laboratory-scale sequencing batch reactor systems or full-scale plants. The results demonstrate the feasibility of the use of MicroC for denitrification processes, with maximum denitrification rates (k(dmax)) of 6.4 mgN/gVSSh and an observed yield of 0.36 mgVSS/mgCOD. Comparable maximum nitrate uptake rates were found with methanol, while acetate showed a maximum denitrification rate nearly twice as high as the others. The maximum growth rates measured at 20 degrees C for MicroC and methanol were 3.7 and 1.2 day(-1), respectively. The implications resulting from the differences in the denitrification rates and kinetics of different carbon sources on the full-scale nitrogen removal performance, under various configurations and operational conditions, were assessed using Biowin (EnviroSim Associates, Ltd., Flamborough, Ontario, Canada) simulations for both pre- and post-denitrification systems. Examination of microbial population structures using Automated Ribosomal Intergenic Spacer Analysis (ARISA) throughout the study period showed dynamic temporal changes and distinct microbial community structures of different carbon-specific denitrifying cultures. The ability of a specific carbon-acclimated denitrifying population to instantly use other carbon source also was investigated, and the chemical-structure-associated behavior patterns observed suggested that the complex biochemical pathways/enzymes involved in the denitrification process depended on the carbon sources used.

Quantifying terrestrial ecosystem carbon dynamics in the Jinsha watershed, Upper Yangtze, China from 1975 to 2000

USGS Publications Warehouse

Zhao, Shuqing; Liu, Shuguang; Yin, Runsheng; Li, Zhengpeng; Deng, Yulin; Tan, Kun; Deng, Xiangzheng; Rothstein, David; Qi, Jiaguo

2010-01-01

Quantifying the spatial and temporal dynamics of carbon stocks in terrestrial ecosystems and carbon fluxes between the terrestrial biosphere and the atmosphere is critical to our understanding of regional patterns of carbon budgets. Here we use the General Ensemble biogeochemical Modeling System to simulate the terrestrial ecosystem carbon dynamics in the Jinsha watershed of China’s upper Yangtze basin from 1975 to 2000, based on unique combinations of spatial and temporal dynamics of major driving forces, such as climate, soil properties, nitrogen deposition, and land use and land cover changes. Our analysis demonstrates that the Jinsha watershed ecosystems acted as a carbon sink during the period of 1975–2000, with an average rate of 0.36 Mg/ha/yr, primarily resulting from regional climate variation and local land use and land cover change. Vegetation biomass accumulation accounted for 90.6% of the sink, while soil organic carbon loss before 1992 led to a lower net gain of carbon in the watershed, and after that soils became a small sink. Ecosystem carbon sink/source patterns showed a high degree of spatial heterogeneity. Carbon sinks were associated with forest areas without disturbances, whereas carbon sources were primarily caused by stand-replacing disturbances. It is critical to adequately represent the detailed fast-changing dynamics of land use activities in regional biogeochemical models to determine the spatial and temporal evolution of regional carbon sink/source patterns.

Tundra ecosystems observed to be CO2 sources due to differential amplification of the carbon cycle.

PubMed

Belshe, E F; Schuur, E A G; Bolker, B M

2013-10-01

Are tundra ecosystems currently a carbon source or sink? What is the future trajectory of tundra carbon fluxes in response to climate change? These questions are of global importance because of the vast quantities of organic carbon stored in permafrost soils. In this meta-analysis, we compile 40 years of CO2 flux observations from 54 studies spanning 32 sites across northern high latitudes. Using time-series analysis, we investigated if seasonal or annual CO2 fluxes have changed over time, and whether spatial differences in mean annual temperature could help explain temporal changes in CO2 flux. Growing season net CO2 uptake has definitely increased since the 1990s; the data also suggest (albeit less definitively) an increase in winter CO2 emissions, especially in the last decade. In spite of the uncertainty in the winter trend, we estimate that tundra sites were annual CO2 sources from the mid-1980s until the 2000s, and data from the last 7 years show that tundra continue to emit CO2 annually. CO2 emissions exceed CO2 uptake across the range of temperatures that occur in the tundra biome. Taken together, these data suggest that despite increases in growing season uptake, tundra ecosystems are currently CO2 sources on an annual basis. © 2013 John Wiley & Sons Ltd/CNRS.

Source apportionment and location by selective wind sampling and Positive Matrix Factorization.

PubMed

Venturini, Elisa; Vassura, Ivano; Raffo, Simona; Ferroni, Laura; Bernardi, Elena; Passarini, Fabrizio

2014-10-01

In order to determine the pollution sources in a suburban area and identify the main direction of their origin, PM2.5 was collected with samplers coupled with a wind select sensor and then subjected to Positive Matrix Factorization (PMF) analysis. In each sample, soluble ions, organic carbon, elemental carbon, levoglucosan, metals, and Polycyclic Aromatic Hydrocarbons (PAHs) were determined. PMF results identified six main sources affecting the area: natural gas home appliances, motor vehicles, regional transport, biomass combustion, manufacturing activities, and secondary aerosol. The connection of factor temporal trends with other parameters (i.e., temperature, PM2.5 concentration, and photochemical processes) confirms factor attributions. PMF analysis indicated that the main source of PM2.5 in the area is secondary aerosol. This should be mainly due to regional contributions, owing to both the secondary nature of the source itself and the higher concentration registered in inland air masses. The motor vehicle emission source contribution is also important. This source likely has a prevalent local origin. The most toxic determined components, i.e., PAHs, Cd, Pb, and Ni, are mainly due to vehicular traffic. Even if this is not the main source in the study area, it is the one of greatest concern. The application of PMF analysis to PM2.5 collected with this new sampling technique made it possible to obtain more detailed results on the sources affecting the area compared to a classical PMF analysis.

Water soluble organic aerosols in the Colorado Rocky Mountains, USA: composition, sources and optical properties

PubMed Central

Xie, Mingjie; Mladenov, Natalie; Williams, Mark W.; Neff, Jason C.; Wasswa, Joseph; Hannigan, Michael P.

2016-01-01

Atmospheric aerosols have been shown to be an important input of organic carbon and nutrients to alpine watersheds and influence biogeochemical processes in these remote settings. For many remote, high elevation watersheds, direct evidence of the sources of water soluble organic aerosols and their chemical and optical characteristics is lacking. Here, we show that the concentration of water soluble organic carbon (WSOC) in the total suspended particulate (TSP) load at a high elevation site in the Colorado Rocky Mountains was strongly correlated with UV absorbance at 254 nm (Abs254, r = 0.88 p < 0.01) and organic carbon (OC, r = 0.95 p < 0.01), accounting for >90% of OC on average. According to source apportionment analysis, biomass burning had the highest contribution (50.3%) to average WSOC concentration; SOA formation and motor vehicle emissions dominated the contribution to WSOC in the summer. The source apportionment and backward trajectory analysis results supported the notion that both wildfire and Colorado Front Range pollution sources contribute to the summertime OC peaks observed in wet deposition at high elevation sites in the Colorado Rocky Mountains. These findings have important implications for water quality in remote, high-elevation, mountain catchments considered to be our pristine reference sites. PMID:27991554

Can Surface Seeps Elucidate Carbon Cycling in Terrestrial Subsurface Ecosystems in Ophiolite-hosted Serpentinizing Fluids?

NASA Astrophysics Data System (ADS)

Meyer-Dombard, D. R.; Cardace, D.; Woycheese, K. M.; Vallalar, B.; Arcilla, C. A.

2017-12-01

Serpentinization in ophiolite-hosted regimes produces highly reduced, high pH fluids that are often characterized as having copious H2 and CH4 gas, little/no inorganic carbon, and limited electron acceptors. Subsurface microbial biomes shift as deeply-sourced fluids reach the oxygenated surface environment, where organisms capable of metabolizing O2 thrive (Woycheese et al., 2015). The relationship, connection, and communication between surface expressions (such as fluid seeps) and the subsurface biosphere is still largely unexplored. Our work in the Zambales and Palawan ophiolites (Philippines) defines surface habitats with geochemistry, targeted culturing efforts, and community analysis (Cardace et al., 2015; Woycheese et al., 2015). Fluids in the spring sources are largely `typical' and fall in the pH range of 9-11.5 with measurable gas escaping from the subsurface (H2 and CH4 > 10uM, CO2 > 1 mM; Cardace et al., 2015). Outflow channels extend from the source pools. These surface data encourage prediction of the subsurface metabolic landscape. To understand how carbon cycling in the subsurface and surface environments might be related, we focus on community analysis, culturing, and the geochemical context of the ecosystem. Shotgun metagenomic analyses indicate carbon cycling is reliant on methanogenesis, acetogenesis, sulfate reduction, and H2 and CH4 oxidation. Methyl coenzyme M reductase, and formylmethanofuran dehydrogenase were detected, and relative abundance increased near the near-anoxic spring source. In this tropical climate, cellulose is also a likely carbon source, possibly even in the subsurface. Enrichment cultures [pH 8-12] and strains [pH 8-10] from Zambales springs show degradation of cellulose and production of cellulase. DIC, DOC, and 13C of solid substrates show mixed autotrophic/heterotrophic activity. Results indicate a metabolically flexible surface community, and suggest details about carbon cycling in the subsurface.

Measurements of Carbon Dioxide, Methane, and Other Related Tracers at High Spatial and Temporal Resolution in an Urban Environment

NASA Astrophysics Data System (ADS)

Yasuhara, Scott; Forgeron, Jeff; Rella, Chris; Franz, Patrick; Jacobson, Gloria; Chiao, Sen; Saad, Nabil

2013-04-01

The ability to quantify sources and sinks of carbon dioxide and methane on the urban scale is essential for understanding the atmospheric drivers to global climate change. In the 'top-down' approach, overall carbon fluxes are determined by combining remote measurements of carbon dioxide concentrations with complex atmospheric transport models, and these emissions measurements are compared to 'bottom-up' predictions based on detailed inventories of the sources and sinks of carbon, both anthropogenic and biogenic in nature. This approach, which has proven to be effective at continental scales, becomes challenging to implement at urban scales, due to poorly understood atmospheric transport models and high variability of the emissions sources in space (e.g., factories, highways, green spaces) and time (rush hours, factory shifts and shutdowns, and diurnal and seasonal variation in residential energy use). New measurement and analysis techniques are required to make sense of the carbon dioxide signal in cities. Here we present detailed, high spatial- and temporal- resolution greenhouse gas measurements made by multiple Picarro-CRDS analyzers in Silicon Valley in California. Real-time carbon dioxide data from a 20-month period are combined with real-time carbon monoxide, methane, and acetylene to partition the observed carbon dioxide concentrations between different anthropogenic sectors (e.g., transport, residential) and biogenic sources. Real-time wind rose data are also combined with real-time methane data to help identify the direction of local emissions of methane. High resolution WRF models are also included to better understand the dynamics of the boundary layer. The ratio between carbon dioxide and carbon monoxide is shown to vary over more than a factor of two from season to season or even from day to night, indicating rapid but frequent shifts in the balance between different carbon dioxide sources. Additional information is given by acetylene, a fossil fuel combustion tracer that provides complimentary information to carbon monoxide. In spring and summer, the combined signal of the urban center and the surrounding biosphere and urban green space is explored. These methods show great promise for identifying, quantifying, and partitioning urban-ecological (carbon) emissions.

Emissions & Measurements - Black Carbon | Science ...

EPA Pesticide Factsheets

Emissions and Measurement (EM) research activities performed within the National Risk Management Research Lab NRMRL) of EPA's Office of Research and Development (ORD) support measurement and laboratory analysis approaches to accurately characterize source emissions, and near source concentrations of air pollutants. They also support integrated Agency research programs (e.g., source to health outcomes) and the development of databases and inventories that assist Federal, state, and local air quality managers and industry implement and comply with air pollution standards. EM research underway in NRMRL supports the Agency's efforts to accurately characterize, analyze, measure and manage sources of air pollution. This pamphlet focuses on the EM research that NRMRL researchers conduct related to black carbon (BC). Black Carbon is a pollutant of concern to EPA due to its potential impact on human health and climate change. There are extensive uncertainties in emissions of BC from stationary and mobile sources. Emissions and Measurement (EM) research activities performed within the National Risk Management Research Lab NRMRL) of EPA's Office of Research and Development (ORD)

Test of a new stable isotopic fingerprinting technique (i.e. Compound Specific Stable Isotope) in an Austrian sub-catchment to establish agricultural soil source contribution to deposited sediment

NASA Astrophysics Data System (ADS)

Mbaye, Modou; Mabit, Lionel; Gibbs, Max; Meusburger, Katrin; Toloza, Arsenio; Resch, Christian; Klik, Andreas; Swales, Andrew; Alewell, Christine

2017-04-01

In order to test and refine the use of compound-specific stable isotope (CSSI) as a fingerprinting technique, an innovative study was conducted in a sub-catchment dominated by C3 plants located 60 km north of Vienna. This experimental site consists of 4 different contributing sources (i.e. 3 agricultural fields and one grassed waterway) and one sediment mixture in which the δ13C values of the bulk soil carbon and of various fatty acids (FAs) were analysed after a cost effective sampling strategy. Bi-scatterplots of all possible combinations of δ13C FAs including the bulk soil carbon δ13C showed that bulk soil carbon δ13C is a strong discriminant among the other FAs. Moreover, bulk soil carbon δ13C values highlighted the highest difference between the four sources and the δ13C values of C24 indicated significant differences for all sources while δ13C of C22 did not exhibit a significant difference between the two first sources. An additional correlation analysis revealed that the highest significant linear dependencies are between δ13C16 & δ13C18 > δ13C18 & δ13C24 > δ13C16 & δ13C24. Among the variables, the bulk soil carbon δ13C was found to be the least correlated parameter, confirming that it is the most reliable discriminator to determine the sediment origins in the mixture. To summarize, only the long chain FAs (i.e. C22 and C24) as well as the bulk soil carbon δ13C succeeded in fulfilling our multivariate statistical tests. These findings were confirmed by the mixing polygon tests and Principal Component Analysis. Using three different mixing models (i.e. Iso-source, CSSIAR v1.0 and MIXSIAR), the contribution of the different sources to the mixture were evaluated. All models highlighted that the third source (field having C3 and C4 plants in rotation) and the grassed waterway were the main contributing agricultural area representing 25-31% and 50-57% of the deposited sediment constituting the mixture, respectively.

Special role of corn flour as an ideal carbon source for aerobic denitrification with minimized nitrous oxide emission.

PubMed

Zhu, Shuangyue; Zheng, Maosheng; Li, Can; Gui, Mengyao; Chen, Qian; Ni, Jinren

2015-06-01

Much effort has been made for reducing nitrous oxide (N2O) emission in wastewater treatment processes. This paper presents an interesting way to minimize N2O in aerobic denitrification by strain Pseudomonas stutzeri PCN-1 with help of corn flour as cheaper additional carbon source. Experimental results showed that maximal N2O accumulation by strain PCN-1 was only 0.02% of removed nitrogen if corn flour was used as sole carbon source, which was significantly reduced by 52.07-99.81% comparing with others such as succinate, glucose, acetate and citrate. Sustained release of reducing sugar from starch and continuous expression of nosZ coding for N2O reductase contributed to the special role of corn flour as the ideal carbon source for strain PCN-1. Further experiments in sequencing batch reactors (SBRs) demonstrated similarly efficient nitrogen removal with much less N2O emission due to synergy of the novel strain and activated sludge, which was then confirmed by quantitative PCR analysis. Copyright © 2015 Elsevier Ltd. All rights reserved.

Source data supported high resolution carbon emissions inventory for urban areas of the Beijing-Tianjin-Hebei region: Spatial patterns, decomposition and policy implications.

PubMed

Cai, Bofeng; Li, Wanxin; Dhakal, Shobhakar; Wang, Jianghao

2018-01-15

This paper developed internationally compatible methods for delineating boundaries of urban areas in China. By integrating emission source data with existing official statistics as well as using rescaling methodology of data mapping for 1 km grid, the authors constructed high resolution emission gridded data in Beijing-Tianjin-Hebei (Jing-Jin-Ji) region in China for 2012. Comparisons between urban and non-urban areas of carbon emissions from industry, agriculture, household and transport exhibited regional disparities as well as sectoral differences. Except for the Hebei province, per capita total direct carbon emissions from urban extents in Beijing and Tianjin were both lower than provincial averages, indicating the climate benefit of urbanization, comparable to results from developed countries. Urban extents in the Hebei province were mainly industrial centers while those in Beijing and Tianjin were more service oriented. Further decomposition analysis revealed population to be a common major driver for increased carbon emissions but climate implications of urban design, economic productivity of land use, and carbon intensity of GDP were both cluster- and sector-specific. This study disapproves the one-size-fits-all solution for carbon mitigation but calls for down-scaled analysis of carbon emissions and formulation of localized carbon reduction strategies in the Jing-Jin-Ji as well as other regions in China. Copyright © 2017 Elsevier Ltd. All rights reserved.

Radiocarbon determination of fossil and contemporary carbon contribution to aerosol in the Pacific Islands.

PubMed

Isley, C F; Nelson, P F; Taylor, M P; Williams, A A; Jacobsen, G E

2018-06-21

Combustion emissions are of growing concern across all Pacific Island Countries, which account for >10,000 km 2 of the earth's surface area; as for many other small island states globally. Apportioning emissions inputs for Suva, the largest Pacific Island city, will aid in development of emission reduction strategies. Total suspended particulate (TSP) and fine particulate (PM 2.5 ) samples were collected for Suva City, a residential area (Kinoya, TSP) and a mainly ocean-influenced site (Suva Point, TSP) from 2014 to 2015. Percentages of contemporary and fossil carbon were determined by radiocarbon analysis (accelerator mass spectrometry); for non‑carbonate carbon (NCC), elemental carbon (EC) and organic carbon (OC). Source contributions to particulate matter were identified and the accuracy of previous emissions inventory and source apportionment studies was evaluated. Suva Point NCC concentrations (2.7 ± 0.4 μg/m 3 ) were four times lower than for City (13 ± 2 μg/m 3 in TSP) and Kinoya (13 ± 1 μg/m 3 in TSP); demonstrating the contribution of land-based emissions activities in city and residential areas. In Suva City, total NCC in air was 81% (79%-83%) fossil carbon, from vehicles, shipping, power generation and industry; whilst in the residential area, 48% (46%-50%) of total NCC was contemporary carbon; reflecting the higher incidence of biomass and waste burning and of cooking activities. Secondary organic fossil carbon sources contributed >36% of NCC mass at the city and >29% at Kinoya; with biogenic carbon being Kinoya's most significant source (approx. 30% of NCC mass). These results support the previous source apportionment studies for the city area; yet show that, in line with emissions inventory studies, biomass combustion contributes more PM 2.5 mass in residential areas. Hence air quality management strategies need to target open burning activities as well as fossil fuel combustion. Copyright © 2018 Elsevier B.V. All rights reserved.

Analyzing sources to sedimentary organic carbon in the Gulf of Urabá, southern Caribbean, using carbon stable isotopes

NASA Astrophysics Data System (ADS)

Rúa, Alex; Liebezeit, Gerd; Grajales, Heazel; Palacio, Jaime

2017-10-01

Carbon stable isotopes analysis serve reconstruction of the origin of organic matter (OM) deposited onto sediments. They also allow tracing vegetation change at different time scales. This study weighs the contribution of both marine and terrestrial sources to sedimentary organic carbon (OC) from a southwestern Caribbean Gulf partly surrounded by large Musa acuminata (banana) croplands. The δ13C values in three sediment cores from the gulf have slightly decreased over 1000 yrs BP, indicating enhanced terrestrial input of detrital carbon owing to river discharge. A two-end mixing model fed with these δ13C values showed that averaged terrestrial contribution of OC to sediment was 52.0% at prodelta, 76.4% at delta front, and 64.2% at Colombia Bay. This agrees well with sediment dynamics. The main source of sedimentary OC within the gulf was terrestrial instead of marine. In fact, a distorted trend in δ13C values for one of the coring sites could be the result of banana crop expansion through the 20th century.

CARBON CONTAINING COMPONENT OF THE LOS ANGELES AEROSOL: SOURCE APPORTIONMENT AND CONTRIBUTIONS TO THE VISIBILITY BUDGET

EPA Science Inventory

Source resolution of the organic component of the fine fraction of the ambient aerosol (d(sub p) < 3.5 micrometers) has been carried out by combining source information from the organic component with thermal analysis and local emission inventories. The primary and secondary carb...

Alluvial Mountain Meadow Source-Sink Dynamics: Land-Cover Effects on Water and Fluvial Carbon Export

NASA Astrophysics Data System (ADS)

Weiss, T.; Covino, T. P.; Wohl, E.; Rhoades, C.; Fegel, T.; Clow, D. W.

2017-12-01

Fluvial networks of historically glaciated mountain landscapes alternate between confined and unconfined valley segments. In low-gradient unconfined reaches, river-connected wet meadows commonly establish, and have been recognized as important locations of long-term water, carbon, and nutrient storage. Among connected meadow floodplains, sink-source behavior shifts as a function of flow state; storing water at high flows (snowmelt) and contributing toward higher late-season baseflows. Despite these benefits, historical and contemporary land-use practices often result in the simplification of wet meadow systems, leading to reduced river-floodplain connectivity, lower water-tables and reductions in hydrologic buffering capacity. In this study, we are exploring hydrologic-carbon relationships across a gradient of valley confinement and river-floodplain connectivity (connected, n=3; disconnected, n=4) within the Colorado Rockies. Our approach includes hydrologic analysis, fluorometric assays, water chemistry, instream metabolic measures, and land-cover assessment to examine patterns between land-form, carbon quantity and quality, and stream ecosystem productivity. Between different meadow types, preliminary results suggest differences between instream productivity, carbon qualities, and hydrologic-carbon sink-source dynamics across the season. These data and analyses will provide insight into water, carbon and nutrient flux dynamics as a function of land-cover in mountain headwaters.

Assessment of Blue Carbon Storage by Baja California (Mexico) Tidal Wetlands and Evidence for Wetland Stability in the Face of Anthropogenic and Climatic Impacts.

PubMed

Watson, Elizabeth Burke; Hinojosa Corona, Alejandro

2017-12-24

Although saline tidal wetlands cover less than a fraction of one percent of the earth's surface (~0.01%), they efficiently sequester organic carbon due to high rates of primary production coupled with surfaces that aggrade in response to sea level rise. Here, we report on multi-decadal changes (1972-2008) in the extent of tidal marshes and mangroves, and characterize soil carbon density and source, for five regions of tidal wetlands located on Baja California's Pacific coast. Land-cover change analysis indicates the stability of tidal wetlands relative to anthropogenic and climate change impacts over the past four decades, with most changes resulting from natural coastal processes that are unique to arid environments. The disturbance of wetland soils in this region (to a depth of 50 cm) would liberate 2.55 Tg of organic carbon (C) or 9.36 Tg CO₂eq. Based on stoichiometry and carbon stable isotope ratios, the source of organic carbon in these wetland sediments is derived from a combination of wetland macrophyte, algal, and phytoplankton sources. The reconstruction of natural wetland dynamics in Baja California provides a counterpoint to the history of wetland destruction elsewhere in North America, and measurements provide new insights on the control of carbon sequestration in arid wetlands.

Measurements of Carbon Dioxide, Carbon Monoxide, and Other Related Tracers at High Spatial and Temporal Resolution in an Urban Environment

NASA Astrophysics Data System (ADS)

Rella, C.; Jacobson, G.

2012-04-01

The ability to quantify the sources and sinks of carbon dioxide on the urban scale is essential for understanding the atmospheric drivers to global climate change. In the 'top-down' approach, overall carbon fluxes are determined by combining remote measurements of carbon dioxide concentrations with complex atmospheric transport models, and these emissions measurements are compared to "bottoms-up" predictions based on detailed inventories of the sources and sinks of carbon, both anthropogenic and biogenic in nature. This approach, which has been proven to be effective at continental scales, becomes challenging to implement at the urban scale, due to poorly understood micrometeorological atmospheric transport models and high variability of the emissions sources in space (e.g., factories, highways, residences) and time (rush hours, factory shifts and shutdowns, residential energy usage variability during the day and over the year). New measurement and analysis techniques are required to make sense of the carbon dioxide signal in cities. Here we present detailed, high spatial- and temporal-resolution greenhouse gas measurements in Silicon Valley in California. The synthesis of two experimental campaigns is presented: real-time measurements from two ten-meter urban 'towers,' and ground-based mobile mapping measurements. Real-time carbon dioxide data from a nine-month period are combined with real-time carbon monoxide, methane, acetylene, and carbon 13 measurements to partition the observed CO2 concentrations between different anthropogenic sectors (e.g., transport, residential) and biogenic sources. The carbon monoxide to carbon dioxide ratio is shown to vary over more than a factor of two from season to season or even from day to night, indicating rapid and frequent shifts in the balance between different carbon dioxide sources. Clear differences are seen between the two urban sites, which are separated by 7 km. Further information is given by the carbon 13 signature and by acetylene, another tracer that provides complementary information to carbon monoxide as an indicator of combustion. In spring and summer, the combined signal of the urban center and the surrounding biosphere and urban green space is explored. These methods show great promise for quantifying and partitioning carbon dioxide emissions in an urban and mixed urban / ecological setting.

Volatile, isotope, and organic analysis of martian fines with the Mars Curiosity rover.

PubMed

Leshin, L A; Mahaffy, P R; Webster, C R; Cabane, M; Coll, P; Conrad, P G; Archer, P D; Atreya, S K; Brunner, A E; Buch, A; Eigenbrode, J L; Flesch, G J; Franz, H B; Freissinet, C; Glavin, D P; McAdam, A C; Miller, K E; Ming, D W; Morris, R V; Navarro-González, R; Niles, P B; Owen, T; Pepin, R O; Squyres, S; Steele, A; Stern, J C; Summons, R E; Sumner, D Y; Sutter, B; Szopa, C; Teinturier, S; Trainer, M G; Wray, J J; Grotzinger, J P

2013-09-27

Samples from the Rocknest aeolian deposit were heated to ~835°C under helium flow and evolved gases analyzed by Curiosity's Sample Analysis at Mars instrument suite. H2O, SO2, CO2, and O2 were the major gases released. Water abundance (1.5 to 3 weight percent) and release temperature suggest that H2O is bound within an amorphous component of the sample. Decomposition of fine-grained Fe or Mg carbonate is the likely source of much of the evolved CO2. Evolved O2 is coincident with the release of Cl, suggesting that oxygen is produced from thermal decomposition of an oxychloride compound. Elevated δD values are consistent with recent atmospheric exchange. Carbon isotopes indicate multiple carbon sources in the fines. Several simple organic compounds were detected, but they are not definitively martian in origin.

An atomic carbon source for high temperature molecular beam epitaxy of graphene.

PubMed

Albar, J D; Summerfield, A; Cheng, T S; Davies, A; Smith, E F; Khlobystov, A N; Mellor, C J; Taniguchi, T; Watanabe, K; Foxon, C T; Eaves, L; Beton, P H; Novikov, S V

2017-07-26

We report the use of a novel atomic carbon source for the molecular beam epitaxy (MBE) of graphene layers on hBN flakes and on sapphire wafers at substrate growth temperatures of ~1400 °C. The source produces a flux of predominantly atomic carbon, which diffuses through the walls of a Joule-heated tantalum tube filled with graphite powder. We demonstrate deposition of carbon on sapphire with carbon deposition rates up to 12 nm/h. Atomic force microscopy measurements reveal the formation of hexagonal moiré patterns when graphene monolayers are grown on hBN flakes. The Raman spectra of the graphene layers grown on hBN and sapphire with the sublimation carbon source and the atomic carbon source are similar, whilst the nature of the carbon aggregates is different - graphitic with the sublimation carbon source and amorphous with the atomic carbon source. At MBE growth temperatures we observe etching of the sapphire wafer surface by the flux from the atomic carbon source, which we have not observed in the MBE growth of graphene with the sublimation carbon source.

Stable carbon isotope ratio in atmospheric CO2 collected by new diffusive devices.

PubMed

Proto, Antonio; Cucciniello, Raffaele; Rossi, Federico; Motta, Oriana

2014-02-01

In this paper, stable carbon isotope ratios (δ (13)C) were determined in the atmosphere by using a Ca-based sorbent, CaO/Ca12Al14O33 75:25 w/w, for passively collecting atmospheric CO2, in both field and laboratory experiments. Field measurements were conducted in three environments characterized by different carbon dioxide sources. In particular, the environments under consideration were a rather heavily trafficked road, where the source of CO2 is mostly vehicle exhaust, a rural unpolluted area, and a private kitchen where the major source of CO2 was gas combustion. Samplers were exposed to the free atmosphere for 3 days in order to allow collection of sufficient CO2 for δ(13)C analysis, then the collected CO2 was desorbed from the adsorbent with acid treatment, and directly analyzed by nondispersive infrared (NDIR) instrument. δ (13)C results confirmed that the samplers collected representative CO2 samples and no fractionation occurred during passive trapping, as also confirmed by an appositely designed experiment conducted in the laboratory. Passive sampling using CaO/Ca12Al14O33 75:25 w/w proved to be an easy and reliable method to collect atmospheric carbon dioxide for δ (13)C analysis in both indoor and outdoor places.

Metabolically engineered glucose-utilizing Shewanella strains under anaerobic conditions.

PubMed

Choi, Donggeon; Lee, Sae Bom; Kim, Sohyun; Min, Byoungnam; Choi, In-Geol; Chang, In Seop

2014-02-01

Comparative genome analysis of Shewanella strains predicted that the strains metabolize preferably two- and three-carbon carbohydrates as carbon/electron source because many Shewanella genomes are deficient of the key enzymes in glycolysis (e.g., glucokinase). In addition, all Shewanella genomes are known to have only one set of genes associated with the phosphotransferase system required to uptake sugars. To engineer Shewanella strains that can utilize five- and six-carbon carbohydrates, we constructed glucose-utilizing Shewanella oneidensis MR-1 by introducing the glucose facilitator (glf; ZMO0366) and glucokinase (glk; ZMO0369) genes of Zymomonas mobilis. The engineered MR-1 strain was able to grow on glucose as a sole carbon/electron source under anaerobic conditions. The glucose affinity (Ks) and glucokinase activity in the engineered MR-1 strain were 299.46 mM and 0.259 ± 0.034 U/g proteins. The engineered strain was successfully applied to a microbial fuel cell system and exhibited current generation using glucose as the electron source. Copyright © 2013 Elsevier Ltd. All rights reserved.

Towards the isolation and estimation of elemental carbon in atmospheric aerosols using supercritical fluid extraction and thermo-optical analysis.

PubMed

Azeem, Hafiz Abdul; Martinsson, Johan; Stenström, Kristina Eriksson; Swietlicki, Erik; Sandahl, Margareta

2017-07-01

Air-starved combustion of biomass and fossil fuels releases aerosols, including airborne carbonaceous particles, causing negative climatic and health effects. Radiocarbon analysis of the elemental carbon (EC) fraction can help apportion sources of its emission, which is greatly constrained by the challenges in isolation of EC from organic compounds in atmospheric aerosols. The isolation of EC using thermo-optical analysis is however biased by the presence of interfering compounds that undergo pyrolysis during the analysis. EC is considered insoluble in all acidic, basic, and organic solvents. Based on the property of insolubility, a sample preparation method using supercritical CO 2 and methanol as co-solvent was developed to remove interfering organic compounds. The efficiency of the method was studied by varying the density of supercritical carbon dioxide by means of temperature and pressure and by varying the methanol content. Supercritical CO 2 with 10% methanol by volume at a temperature of 60 °C, a pressure of 350 bar and 20 min static mode extraction were found to be the most suitable conditions for the removal of 59 ± 3% organic carbon, including compounds responsible for pyrolysis with 78 ± 16% EC recovery. The results indicate that the method has potential for the estimation and isolation of EC from OC for subsequent analysis methods and source apportionment studies.

Optimizing sample pretreatment for compound-specific stable carbon isotopic analysis of amino sugars in marine sediment

NASA Astrophysics Data System (ADS)

Zhu, R.; Lin, Y.-S.; Lipp, J. S.; Meador, T. B.; Hinrichs, K.-U.

2014-01-01

Amino sugars are quantitatively significant constituents of soil and marine sediment, but their sources and turnover in environmental samples remain poorly understood. The stable carbon isotopic composition of amino sugars can provide information on the lifestyles of their source organisms and can be monitored during incubations with labeled substrates to estimate the turnover rates of microbial populations. However, until now, such investigation has been carried out only with soil samples, partly because of the much lower abundance of amino sugars in marine environments. We therefore optimized a procedure for compound-specific isotopic analysis of amino sugars in marine sediment employing gas chromatography-isotope ratio mass spectrometry. The whole procedure consisted of hydrolysis, neutralization, enrichment, and derivatization of amino sugars. Except for the derivatization step, the protocol introduced negligible isotopic fractionation, and the minimum requirement of amino sugar for isotopic analysis was 20 ng, i.e. equivalent to ~ 8 ng of amino sugar carbon. Our results obtained from δ13C analysis of amino sugars in selected marine sediment samples showed that muramic acid had isotopic imprints from indigenous bacterial activities, whereas glucosamine and galactosamine were mainly derived from organic detritus. The analysis of stable carbon isotopic compositions of amino sugars opens a promising window for the investigation of microbial metabolisms in marine sediments and the deep marine biosphere.

Optimizing sample pretreatment for compound-specific stable carbon isotopic analysis of amino sugars in marine sediment

NASA Astrophysics Data System (ADS)

Zhu, R.; Lin, Y.-S.; Lipp, J. S.; Meador, T. B.; Hinrichs, K.-U.

2014-09-01

Amino sugars are quantitatively significant constituents of soil and marine sediment, but their sources and turnover in environmental samples remain poorly understood. The stable carbon isotopic composition of amino sugars can provide information on the lifestyles of their source organisms and can be monitored during incubations with labeled substrates to estimate the turnover rates of microbial populations. However, until now, such investigation has been carried out only with soil samples, partly because of the much lower abundance of amino sugars in marine environments. We therefore optimized a procedure for compound-specific isotopic analysis of amino sugars in marine sediment, employing gas chromatography-isotope ratio mass spectrometry. The whole procedure consisted of hydrolysis, neutralization, enrichment, and derivatization of amino sugars. Except for the derivatization step, the protocol introduced negligible isotopic fractionation, and the minimum requirement of amino sugar for isotopic analysis was 20 ng, i.e., equivalent to ~8 ng of amino sugar carbon. Compound-specific stable carbon isotopic analysis of amino sugars obtained from marine sediment extracts indicated that glucosamine and galactosamine were mainly derived from organic detritus, whereas muramic acid showed isotopic imprints from indigenous bacterial activities. The δ13C analysis of amino sugars provides a valuable addition to the biomarker-based characterization of microbial metabolism in the deep marine biosphere, which so far has been lipid oriented and biased towards the detection of archaeal signals.

Stable isotopic analysis of human diet in the Marianas Archipelago, western Pacific.

PubMed

Ambrose, S H; Butler, B M; Hanson, D B; Hunter-Anderson, R L; Krueger, H W

1997-11-01

Proportions of marine vs. terrestrial resources in prehistoric human diets in the southern Mariana Islands (Guam, Rota, Saipan), Micronesia, have been estimated by analysis of stable isotope ratios of carbon and nitrogen in bone collagen and of carbon in apatite. The isotopic composition of marine and terrestrial food resources from the Marianas have also been determined. Experimental evidence shows that collagen carbon isotopes mainly reflect those of dietary protein sources and thus overestimate the contribution of marine animal foods. Marine protein consumption apparently ranges from approximately 20% to approximately 50% on these islands. Experiments also demonstrate the carbon isotope ratio of bone apatite carbonate accurately reflects that of the whole diet. Carbonate carbon isotope data suggest some individuals consumed significant amounts of 13C-enriched (C4) plants or seaweeds. Sugar cane is an indigenous C4 crop and seaweeds are eaten throughout the Pacific, but they have not been considered by archaeologists to have been prehistoric dietary staples. Apatite carbon isotope analysis has apparently identified previously unrecognized prehistoric dietary adaptations in the Mariana Islands, but this must be confirmed by archaeobotanical evidence.

Enhanced biological phosphorus removal with different carbon sources.

PubMed

Shen, Nan; Zhou, Yan

2016-06-01

Enhanced biological phosphorus removal (EBPR) process is one of the most economical and sustainable methods for phosphorus removal from wastewater. However, the performance of EBPR can be affected by available carbon sources types in the wastewater that may induce different functional microbial communities in the process. Glycogen accumulating organisms (GAOs) and polyphosphate accumulating organisms (PAOs) are commonly found by coexisting in the EBPR process. Predominance of GAO population may lead to EBPR failure due to the competition on carbon source with PAO without contributing phosphorus removal. Carbon sources indeed play an important role in alteration of PAOs and GAOs in EBPR processes. Various types of carbon sources have been investigated for EBPR performance. Certain carbon sources tend to enrich specific groups of GAOs and/or PAOs. This review summarizes the types of carbon sources applied in EBPR systems and highlights the roles of these carbon sources in PAO and GAO competition. Both single (e.g., acetate, propionate, glucose, ethanol, and amino acid) and complex carbon sources (e.g., yeast extract, peptone, and mixed carbon sources) are discussed in this review. Meanwhile, the environmental friendly and economical carbon sources that are derived from waste materials, such as crude glycerol and wasted sludge, are also discussed and compared.

Uncertainty assessment of source attribution of PM(2.5) and its water-soluble organic carbon content using different biomass burning tracers in positive matrix factorization analysis--a case study in Beijing, China.

PubMed

Tao, Jun; Zhang, Leiming; Zhang, Renjian; Wu, Yunfei; Zhang, Zhisheng; Zhang, Xiaoling; Tang, Yixi; Cao, Junji; Zhang, Yuanhang

2016-02-01

Daily PM2.5 samples were collected at an urban site in Beijing during four one-month periods in 2009-2010, with each period in a different season. Samples were subject to chemical analysis for various chemical components including major water-soluble ions, organic carbon (OC) and water-soluble organic carbon (WSOC), element carbon (EC), trace elements, anhydrosugar levoglucosan (LG), and mannosan (MN). Three sets of source profiles of PM2.5 were first identified through positive matrix factorization (PMF) analysis using single or combined biomass tracers - non-sea salt potassium (nss-K(+)), LG, and a combination of nss-K(+) and LG. The six major source factors of PM2.5 included secondary inorganic aerosol, industrial pollution, soil dust, biomass burning, traffic emission, and coal burning, which were estimated to contribute 31±37%, 39±28%, 14±14%, 7±7%, 5±6%, and 4±8%, respectively, to PM2.5 mass if using the nss-K(+) source profiles, 22±19%, 29±17%, 20±20%, 13±13%, 12±10%, and 4±6%, respectively, if using the LG source profiles, and 21±17%, 31±18%, 19±19%, 11±12%, 14±11%, and 4±6%, respectively, if using the combined nss-K(+) and LG source profiles. The uncertainties in the estimation of biomass burning contributions to WSOC due to the different choices of biomass burning tracers were around 3% annually and up to 24% seasonally in terms of absolute percentage contributions, or on a factor of 1.7 annually and up to a factor of 3.3 seasonally in terms of the actual concentrations. The uncertainty from the major source (e.g. industrial pollution) was on a factor of 1.9 annually and up to a factor of 2.5 seasonally in the estimated WSOC concentrations. Copyright © 2015 Elsevier B.V. All rights reserved.

Elucidating carbon sources driving microbial metabolism during oil sands reclamation.

PubMed

Bradford, Lauren M; Ziolkowski, Lori A; Goad, Corey; Warren, Lesley A; Slater, Gregory F

2017-03-01

Microbial communities play key roles in remediation and reclamation of contaminated environments via biogeochemical cycling of organic and inorganic components. Understanding the trends in in situ microbial community abundance, metabolism and carbon sources is therefore a crucial component of effective site management. The focus of this study was to use radiocarbon analysis to elucidate the carbon sources driving microbial metabolism within the first pilot wetland reclamation project in the Alberta oil sands region where the observation of H 2 S had indicated the occurrence of microbial sulphate reduction. The reclamation project involved construction of a three compartment system consisting of a freshwater wetland on top of a sand cap overlying a composite tailings (CT) deposit. Radiocarbon analysis demonstrated that both dissolved and sediment associated organic carbon associated with the deepest compartments (the CT and sand cap) was primarily fossil (Δ 14 C = -769 to -955‰) while organic carbon in the overlying peat was hundreds to thousands of years old (Δ 14 C = -250 to -350‰). Radiocarbon contents of sediment associated microbial phospholipid fatty acids (PLFA) were consistent with the sediment bulk organic carbon pools (Peat: Δ 14 C PLFA  = -257‰; Sand cap Δ 14 C PLFA  = -805‰) indicating that these microbes were using sediment associated carbon. In contrast, microbial PLFA grown on biofilm units installed in wells within the deepest compartments contained much more modern carbon that the associated bulk carbon pools. This implied that the transfer of relatively more modern carbon was stimulating the microbial community at depth within the system. Correlation between cellular abundance estimates based on PLFA concentrations and the Δ 14 C PLFA indicated that the utilization of this more modern carbon was stimulating the microbial community at depth. These results highlight the importance of understanding the occurrence and potential outcomes of the introduction of relatively bioavailable carbon to mine wastes in order to predict and manage the performance of reclamation strategies. Copyright © 2016 Elsevier Ltd. All rights reserved.

Determination of the origin of dissolved inorganic carbon in groundwater around a reclaimed landfill in Otwock using stable carbon isotopes.

PubMed

Porowska, Dorota

2015-05-01

Chemical and isotopic analyses of groundwater from piezometers located around a reclaimed landfill in Otwock (Poland) were performed in order to trace the origin of dissolved inorganic carbon (DIC) in the groundwater. Due to differences in the isotopic composition of carbon from different sources, an analysis of stable carbon isotopes in the groundwater, together with the Keeling plot approach and a two-component mixing model allow us to evaluate the relative contributions of carbon from these sources in the groundwater. In the natural (background) groundwater, DIC concentrations and the isotopic composition of DIC (δ(13)CDIC) comes from two sources: decomposition of organic matter and carbonate dissolution within the aquifer sediments, whereas in the leachate-contaminated groundwater, DIC concentrations and δ(13)CDIC values depend on the degradation of organic matter within the aquifer sediments and biodegradation of organic matter stored in the landfill. From the mixing model, about 4-54% of the DIC pool is derived from organic matter degradation and 96-46% from carbonate dissolution in natural conditions. In the leachate-contaminated groundwater, about 20-53% of the DIC is derived from organic matter degradation of natural origin and 80-47% from biodegradation of organic matter stored in the landfill. Partial pressure of CO2 (P CO2) was generally above the atmospheric, hence atmospheric CO2 as a source of carbon in DIC pool was negligible in the aquifer. P CO2 values in the aquifer in Otwock were always one to two orders of magnitude above the atmospheric P CO2, and thus CO2 escaped directly into the vadose zone. Copyright © 2015 Elsevier Ltd. All rights reserved.

Analysis of the sources and dynamic processes leading to the increase of atmospheric CO2, black carbon and other trace species during recent urban pollution events in the Paris megacity region : a synergy of resources provided by the IPSL OCAPI platform.

NASA Astrophysics Data System (ADS)

Xueref-Remy, I.; Foret, G.; Beekmann, M.; Brégonzio-Rozier, L.; Favez, O.; Gros, V.; Moreau-Guigon, E.; Vogel, F. R.; Belviso, S.; Ghersi, V.; Dupont, J. C.; Bodichon, R.; Cailteau-Fischbach, C.; Baisnee, D.; Peinado, F.; Haeffelin, M.; DeCola, P.; Turnbull, J. C.; Chelin, P.; Te, Y. V.; Formenti, P.; Doussin, J. F.; Gratien, A.; Desboeufs, K. V.; Ramage, K.; Jeseck, P.; Delmotte, M.; Ramonet, M.; Michoud, V.; Ravetta, F.

2016-12-01

Nowadays, more than 50% of the global population leave in urban centers which activities generate large anthropogenic emissions of CO2 (more than 70% of fossil fuel CO2 comes from urbanized/industrialized areas) and reactive gases that endanger our climate, the health of human beings and surrounding ecosystems. The worst situations are encountered during urban pollution events that usually form under anticyclonic conditions. Analyzing the contribution of the local and regional sources of urban CO2 and co-emitted species vs the remote ones, as well as the nature of these sources and the dynamical processes that lead to the building of such events can provide interesting knowledge for helping urban policy makers to better identify the role of anthropogenic/biogenic sources on the urban air composition and to take proper decisions in matter of CO2 and pollutants sources mitigation. With 12 million of people, Paris (France) is the second megacity in Europe. In 2016, two pollution events occured in the Paris region during which the instrumental platform OCAPI (http://observations.ipsl.fr/composition-atmospherique-en-idf.html) from IPSL (Institut Pierre Simon Laplace) was mobilized in collaboration with air quality governing actors (AIRPARIF, INERIS) to collect a bunch of observations. Five sites located in the urban, peri-urban and rural areas of Paris were equiped with in-situ analyzers (CO2, CO, black carbon, 13CO2, COS) ; Fourier transform spectrometers for column measurements (XCO2, XCO, XCOS), particle filters (for aerosols size and content analysis) ; air samples (levoglucosan, 14CO2, VOCs) ; and Lidar profilers (boundary layer height ; wind profiles). These data, combined with a backtrajectories analysis, give information about the dynamical processes that lead to the formation of the pollution events and on the contribution of local, regional and remote sources. The analysis of the correlations between the trace species and of the isotopic content of carbon in CO2 provides further clues on the nature of the anthropogenic and biogenic sources involved in the urban pollution events. Especially, the role of agricultural spreading through the observation of ammonium nitrate particles and the contribution of biomass burning through levoglucosan and black carbon measurements will be discussed.

Biodegradation and utilization of 4-n-nonylphenol by Aspergillus versicolor as a sole carbon and energy source.

PubMed

Krupiński, Mariusz; Janicki, Tomasz; Pałecz, Bartłomiej; Długoński, Jerzy

2014-09-15

4-n-Nonylphenol (4-n-NP) is an environmental pollutant with endocrine-disrupting activities that is formed during the degradation of nonylphenol polyethoxylates, which are widely used as surfactants. Utilization of 4-n-NP by the filamentous fungus Aspergillus versicolor as the sole carbon and energy source was investigated. By means of gas chromatography-mass spectrometry, we showed that in the absence of any carbon source other than 4-n-NP in the medium, A. versicolor completely removed the xenobiotic (100 mg L(-1)) after 3 d of cultivation. Moreover, mass spectrometric analysis of intracellular extracts led to the identification of eight intermediates. The mineralization of the xenobiotic in cultures supplemented with 4-n-NP [ring-(14)C(U)] as a growth substrate was also assessed. After 3 d of incubation, approximately 50% of the initially applied radioactivity was recovered in the form of (14)CO2, proving that this xenobiotic was completely metabolized and utilized by A. versicolor as a carbon source. Based on microscopic analysis, A. versicolor is capable of germinating spores under such conditions. To confirm these observations, a microcalorimetric method was used. The results show that even the highest amount of 4-n-NP initiates heat production in the fungal samples, proving that metabolic processes were affected by the use of 4-n-NP as an energetic substrate. Copyright © 2014 Elsevier B.V. All rights reserved.

Using Strontium Isotopes in Arid Agricultural Soils to Determine a Sink or Source of CO2

NASA Astrophysics Data System (ADS)

Ortiz, A. C.; Jin, L.

2014-12-01

Arid and semi-arid regions of the world are predicted to continue to expand through land degradation and prolonged drought events. Agricultural practices in these drylands degrade soils through elevated salinity, sodicity and alkalinity. Indeed, flood irrigation loads salts onto the soils including carbonate minerals in the form of calcite. Alfalfa and Pecan are salt tolerant and commonly grown in the arid El Paso region, but need irrigation using Rio Grande water with little to no contribution from local ground waters. We hypothesize that the irrigation is loading extra Ca and bicarbonate to soils and anthropogenically enhancing the precipitation of carbonates. We intend to monitor soil CO2 efflux after irrigation, characterize soil minerals, and combine them to isotopic data of soil, irrigation, and drainage waters to link the sources of Ca and C, kinetics of calcite precipitation, to irrigation events. This will include strontium isotopic analysis to determine the source of calcium in the agricultural fields, U-disequilibrium isotopes to estimate the carbonate ages, and CO2 efflux to monitor atmosphere-soil exchange. Carbon dioxide emissions are expected to change during flood irrigation when soils are saturated. After irrigation events, evaporative effects increase Ca and dissolved inorganic carbon concentration in soil waters leading to precipitation of calcite and thus elevated CO2efflux. Preliminary measurements in the pecan field show a marginally significant difference in CO2 fluxes before and after irrigation (p=0.07, t-test). Carbon dioxide emissions are lower during moist conditions (0.6 g m-2hr-1 CO2) than those in dry conditions (1.0 g m-2hr-1 CO2). Future C isotope data are needed to identify the source of extra CO2, biogenic or calcite-precipitation related. A water leachable extraction of alfalfa soils shows 87Sr/86Sr ratios ranged from 0.7101 to 0.7103, indicating Rio Grande river as a dominant calcium source. Further Sr isotopic analysis of sequential extractions from both alfalfa soils (for calcite fraction), pore waters, irrigation waters, and drainage waters will allow us to quantitatively evaluate the source of calcium in calcite therefore, defining if anthropogenic sources of calcium lead to enhanced CO2 production in agricultural fields.

Late Cretaceous marine arthropods relied on terrestrial organic matter as a food source: Geochemical evidence from the Coon Creek Lagerstätte in the Mississippi Embayment.

PubMed

Vrazo, M B; Diefendorf, A F; Crowley, B E; Czaja, A D

2018-03-01

The Upper Cretaceous Coon Creek Lagerstätte of Tennessee, USA, is known for its extremely well-preserved mollusks and decapod crustaceans. However, the depositional environment of this unit, particularly its distance to the shoreline, has long been equivocal. To better constrain the coastal proximity of the Coon Creek Formation, we carried out a multiproxy geochemical analysis of fossil decapod (crab, mud shrimp) cuticle and associated sediment from the type section. Elemental analysis and Raman spectroscopy confirmed the presence of kerogenized carbon in the crabs and mud shrimp; carbon isotope (δ 13 C) analysis of bulk decapod cuticle yielded similar mean δ 13 C values for both taxa (-25.1‰ and -26‰, respectively). Sedimentary biomarkers were composed of n-alkanes from C 16 to C 36 , with the short-chain n-alkanes dominating, as well as other biomarkers (pristane, phytane, hopanes). Raman spectra and biomarker thermal maturity indices suggest that the Coon Creek Formation sediments are immature, which supports retention of unaltered, biogenic isotopic signals in the fossil organic carbon remains. Using our isotopic results and published calcium carbonate δ 13 C values, we modeled carbon isotope values of carbon sources in the Coon Creek Formation, including potential marine (phytoplankton) and terrestrial (plant) dietary sources. Coon Creek Formation decapod δ 13 C values fall closer to those estimated for terrigenous plants than marine phytoplankton, indicating that these organisms were feeding primarily on terrigenous organic matter. From this model, we infer that the Coon Creek Formation experienced significant terrigenous organic matter input via a freshwater source and thus was deposited in a shallow, nearshore marine environment proximal to the shoreline. This study helps refine the paleoecology of nearshore settings in the Mississippi Embayment during the global climatic shift in the late Campanian-early Maastrichtian and demonstrates for the first time that organic δ 13 C signatures in exceptionally preserved fossil marine arthropods are a viable proxy for use in paleoenvironmental reconstructions. © 2018 John Wiley & Sons Ltd.

Long-term trends in California mobile source emissions and ambient concentrations of black carbon and organic aerosol.

PubMed

McDonald, Brian C; Goldstein, Allen H; Harley, Robert A

2015-04-21

A fuel-based approach is used to assess long-term trends (1970-2010) in mobile source emissions of black carbon (BC) and organic aerosol (OA, including both primary emissions and secondary formation). The main focus of this analysis is the Los Angeles Basin, where a long record of measurements is available to infer trends in ambient concentrations of BC and organic carbon (OC), with OC used here as a proxy for OA. Mobile source emissions and ambient concentrations have decreased similarly, reflecting the importance of on- and off-road engines as sources of BC and OA in urban areas. In 1970, the on-road sector accounted for ∼90% of total mobile source emissions of BC and OA (primary + secondary). Over time, as on-road engine emissions have been controlled, the relative importance of off-road sources has grown. By 2010, off-road engines were estimated to account for 37 ± 20% and 45 ± 16% of total mobile source contributions to BC and OA, respectively, in the Los Angeles area. This study highlights both the success of efforts to control on-road emission sources, and the importance of considering off-road engine and other VOC source contributions when assessing long-term emission and ambient air quality trends.

Influence of Black Mangrove Expansion on Salt Marsh Food Web Dynamics in Coastal Louisiana

NASA Astrophysics Data System (ADS)

Powell, C.; Baustian, M. M.; Polito, M. J.

2017-12-01

The range of black mangroves (Avicennia germinans) is projected to expand in the northern Gulf of Mexico due to reduced winter freeze events and an increased rate of droughts. The colonization of mangroves in salt marshes alters habitat structure and creates a novel basal carbon source for consumers. This addition may modify trophic linkages and the structure of estuarine food webs. To understand the implications of mangrove expansion on food web dynamics of traditional Spartina alterniflora marshes, two sites in coastal Louisiana with three habitat types, marsh-dominated, mangrove-dominated, and a transition or mix of the two, were studied. Community composition of juvenile nekton was sampled using fyke nets, minnow traps, and suction sampling and analyzed for abundance and diversity. Primary carbon sources (emergent vegetation, phytoplankton, macroalgae, benthic microalgae, submerged aquatic vegetation, and soil organic matter) and consumers ((blue crabs (Callinectes sapidus), brown shrimp (Farfantepenaeus aztecus), grass shrimp (Palaemonetes spp.), Gulf killifish (Fundulus grandis), periwinkle snails (Littoraria irrorata), eastern oysters (Crassostrea virginica), and southern ribbed mussels (Geukensia granosissima)) collected at each habitat type were measured using stable isotope analysis (δ13C, δ15N, δ34S) to identify trophic level, basal carbon sources, and assess how mangrove carbon is incorporated into salt marsh food webs. While data analysis is ongoing, preliminary results indicate that basal carbon sources supporting some marsh consumers (e.g., periwinkle snails) shift between habitat types, while others remain static (e.g., grass shrimp). This research will further develop our understanding of how climate induced shifts in vegetation influences valued marsh-dependent consumers in the estuarine ecosystems of northern Gulf of Mexico.

Well-to-refinery emissions and net-energy analysis of China's crude-oil supply

NASA Astrophysics Data System (ADS)

Masnadi, Mohammad S.; El-Houjeiri, Hassan M.; Schunack, Dominik; Li, Yunpo; Roberts, Samori O.; Przesmitzki, Steven; Brandt, Adam R.; Wang, Michael

2018-03-01

Oil is China's second-largest energy source, so it is essential to understand the country's greenhouse gas emissions from crude-oil production. Chinese crude supply is sourced from numerous major global petroleum producers. Here, we use a per-barrel well-to-refinery life-cycle analysis model with data derived from hundreds of public and commercial sources to model the Chinese crude mix and the upstream carbon intensities and energetic productivity of China's crude supply. We generate a carbon-denominated supply curve representing Chinese crude-oil supply from 146 oilfields in 20 countries. The selected fields are estimated to emit between 1.5 and 46.9 g CO2eq MJ-1 of oil, with volume-weighted average emissions of 8.4 g CO2eq MJ-1. These estimates are higher than some existing databases, illustrating the importance of bottom-up models to support life-cycle analysis databases. This study provides quantitative insight into China's energy policy and the economic and environmental implications of China's oil consumption.

Influence factors and forecast of carbon emission in China: structure adjustment for emission peak

NASA Astrophysics Data System (ADS)

Wang, B.; Cui, C. Q.; Li, Z. P.

2018-02-01

This paper introduced Principal Component Analysis and Multivariate Linear Regression Model to verify long-term balance relationships between Carbon Emissions and the impact factors. The integrated model of improved PCA and multivariate regression analysis model is attainable to figure out the pattern of carbon emission sources. Main empirical results indicate that among all selected variables, the role of energy consumption scale was largest. GDP and Population follow and also have significant impacts on carbon emission. Industrialization rate and fossil fuel proportion, which is the indicator of reflecting the economic structure and energy structure, have a higher importance than the factor of urbanization rate and the dweller consumption level of urban areas. In this way, some suggestions are put forward for government to achieve the peak of carbon emissions.

Irreducible Uncertainty in Terrestrial Carbon Projections

NASA Astrophysics Data System (ADS)

Lovenduski, N. S.; Bonan, G. B.

2016-12-01

We quantify and isolate the sources of uncertainty in projections of carbon accumulation by the ocean and terrestrial biosphere over 2006-2100 using output from Earth System Models participating in the 5th Coupled Model Intercomparison Project. We consider three independent sources of uncertainty in our analysis of variance: (1) internal variability, driven by random, internal variations in the climate system, (2) emission scenario, driven by uncertainty in future radiative forcing, and (3) model structure, wherein different models produce different projections given the same emission scenario. Whereas uncertainty in projections of ocean carbon accumulation by 2100 is 100 Pg C and driven primarily by emission scenario, uncertainty in projections of terrestrial carbon accumulation by 2100 is 50% larger than that of the ocean, and driven primarily by model structure. This structural uncertainty is correlated with emission scenario: the variance associated with model structure is an order of magnitude larger under a business-as-usual scenario (RCP8.5) than a mitigation scenario (RCP2.6). In an effort to reduce this structural uncertainty, we apply various model weighting schemes to our analysis of variance in terrestrial carbon accumulation projections. The largest reductions in uncertainty are achieved when giving all the weight to a single model; here the uncertainty is of a similar magnitude to the ocean projections. Such an analysis suggests that this structural uncertainty is irreducible given current terrestrial model development efforts.

Experimental and numerical study of impact of voltage fluctuate, flicker and power factor wave electric generator to local distribution

NASA Astrophysics Data System (ADS)

Hadi, Nik Azran Ab; Rashid, Wan Norhisyam Abd; Hashim, Nik Mohd Zarifie; Mohamad, Najmiah Radiah; Kadmin, Ahmad Fauzan

2017-10-01

Electricity is the most powerful energy source in the world. Engineer and technologist combined and cooperated to invent a new low-cost technology and free carbon emission where the carbon emission issue is a major concern now due to global warming. Renewable energy sources such as hydro, wind and wave are becoming widespread to reduce the carbon emissions, on the other hand, this effort needs several novel methods, techniques and technologies compared to coal-based power. Power quality of renewable sources needs in depth research and endless study to improve renewable energy technologies. The aim of this project is to investigate the impact of renewable electric generator on its local distribution system. The power farm was designed to connect to the local distribution system and it will be investigated and analyzed to make sure that energy which is supplied to customer is clean. The MATLAB tools are used to simulate the overall analysis. At the end of the project, a summary of identifying various voltage fluctuates data sources is presented in terms of voltage flicker. A suggestion of the analysis impact of wave power generation on its local distribution is also presented for the development of wave generator farms.

Production and characterization of biodiesel from carbon dioxide concentrating chemolithotrophic bacteria, Serratia sp. ISTD04.

PubMed

Bharti, Randhir K; Srivastava, Shaili; Thakur, Indu Shekhar

2014-02-01

A chemolithotrophic bacterium, Serratia sp. ISTD04, enriched in the chemostat in presence of sodium bicarbonate as sole carbon source was evaluated for potential of carbon dioxide (CO2) sequestration and biofuel production. CO2 sequestration efficiency of the bacterium was determined by enzymatic activity of carbonic anhydrase and ribulose-1,5-bisphosphate carboxylase/oxygenase (RuBisCO). Further, Western blot analysis confirmed presence of RuBisCO. The bacterium produced 0.487 and 0.647mgmg(-1) per unit cell dry weight of hydrocarbons and lipids respectively. The hydrocarbons were within the range of C13-C24 making it equivalent to light oil. GC-MS analysis of lipids produced by the bacterium indicated presence of C15-C20 organic compounds that made it potential source of biodiesel after transesterification. GC-MS, FTIR and NMR spectroscopic characterization of the fatty acid methyl esters revealed the presence of 55% and 45% of unsaturated and saturated organic compounds respectively, thus making it a balanced biodiesel composition. Copyright © 2013 Elsevier Ltd. All rights reserved.

Primary metabolism in Lactobacillus sakei food isolates by proteomic analysis

PubMed Central

2010-01-01

Background Lactobacillus sakei is an important food-associated lactic acid bacterium commonly used as starter culture for industrial meat fermentation, and with great potential as a biopreservative in meat and fish products. Understanding the metabolic mechanisms underlying the growth performance of a strain to be used for food fermentations is important for obtaining high-quality and safe products. Proteomic analysis was used to study the primary metabolism in ten food isolates after growth on glucose and ribose, the main sugars available for L. sakei in meat and fish. Results Proteins, the expression of which varied depending on the carbon source were identified, such as a ribokinase and a D-ribose pyranase directly involved in ribose catabolism, and enzymes involved in the phosphoketolase and glycolytic pathways. Expression of enzymes involved in pyruvate and glycerol/glycerolipid metabolism were also affected by the change of carbon source. Interestingly, a commercial starter culture and a protective culture strain down-regulated the glycolytic pathway more efficiently than the rest of the strains when grown on ribose. The overall two-dimensional gel electrophoresis (2-DE) protein expression pattern was similar for the different strains, though distinct differences were seen between the two subspecies (sakei and carnosus), and a variation of about 20% in the number of spots in the 2-DE gels was observed between strains. A strain isolated from fermented fish showed a higher expression of stress related proteins growing on both carbon sources. Conclusions It is obvious from the data obtained in this study that the proteomic approach efficiently identifies differentially expressed proteins caused by the change of carbon source. Despite the basic similarity in the strains metabolic routes when they ferment glucose and ribose, there were also interesting differences. From the application point of view, an understanding of regulatory mechanisms, actions of catabolic enzymes and proteins, and preference of carbon source is of great importance. PMID:20412581

Primary metabolism in Lactobacillus sakei food isolates by proteomic analysis.

PubMed

McLeod, Anette; Zagorec, Monique; Champomier-Vergès, Marie-Christine; Naterstad, Kristine; Axelsson, Lars

2010-04-22

Lactobacillus sakei is an important food-associated lactic acid bacterium commonly used as starter culture for industrial meat fermentation, and with great potential as a biopreservative in meat and fish products. Understanding the metabolic mechanisms underlying the growth performance of a strain to be used for food fermentations is important for obtaining high-quality and safe products. Proteomic analysis was used to study the primary metabolism in ten food isolates after growth on glucose and ribose, the main sugars available for L. sakei in meat and fish. Proteins, the expression of which varied depending on the carbon source were identified, such as a ribokinase and a D-ribose pyranase directly involved in ribose catabolism, and enzymes involved in the phosphoketolase and glycolytic pathways. Expression of enzymes involved in pyruvate and glycerol/glycerolipid metabolism were also affected by the change of carbon source. Interestingly, a commercial starter culture and a protective culture strain down-regulated the glycolytic pathway more efficiently than the rest of the strains when grown on ribose. The overall two-dimensional gel electrophoresis (2-DE) protein expression pattern was similar for the different strains, though distinct differences were seen between the two subspecies (sakei and carnosus), and a variation of about 20% in the number of spots in the 2-DE gels was observed between strains. A strain isolated from fermented fish showed a higher expression of stress related proteins growing on both carbon sources. It is obvious from the data obtained in this study that the proteomic approach efficiently identifies differentially expressed proteins caused by the change of carbon source. Despite the basic similarity in the strains metabolic routes when they ferment glucose and ribose, there were also interesting differences. From the application point of view, an understanding of regulatory mechanisms, actions of catabolic enzymes and proteins, and preference of carbon source is of great importance.

Matrix approach to uncertainty assessment and reduction for modeling terrestrial carbon cycle

NASA Astrophysics Data System (ADS)

Luo, Y.; Xia, J.; Ahlström, A.; Zhou, S.; Huang, Y.; Shi, Z.; Wang, Y.; Du, Z.; Lu, X.

2017-12-01

Terrestrial ecosystems absorb approximately 30% of the anthropogenic carbon dioxide emissions. This estimate has been deduced indirectly: combining analyses of atmospheric carbon dioxide concentrations with ocean observations to infer the net terrestrial carbon flux. In contrast, when knowledge about the terrestrial carbon cycle is integrated into different terrestrial carbon models they make widely different predictions. To improve the terrestrial carbon models, we have recently developed a matrix approach to uncertainty assessment and reduction. Specifically, the terrestrial carbon cycle has been commonly represented by a series of carbon balance equations to track carbon influxes into and effluxes out of individual pools in earth system models. This representation matches our understanding of carbon cycle processes well and can be reorganized into one matrix equation without changing any modeled carbon cycle processes and mechanisms. We have developed matrix equations of several global land C cycle models, including CLM3.5, 4.0 and 4.5, CABLE, LPJ-GUESS, and ORCHIDEE. Indeed, the matrix equation is generic and can be applied to other land carbon models. This matrix approach offers a suite of new diagnostic tools, such as the 3-dimensional (3-D) parameter space, traceability analysis, and variance decomposition, for uncertainty analysis. For example, predictions of carbon dynamics with complex land models can be placed in a 3-D parameter space (carbon input, residence time, and storage potential) as a common metric to measure how much model predictions are different. The latter can be traced to its source components by decomposing model predictions to a hierarchy of traceable components. Then, variance decomposition can help attribute the spread in predictions among multiple models to precisely identify sources of uncertainty. The highly uncertain components can be constrained by data as the matrix equation makes data assimilation computationally possible. We will illustrate various applications of this matrix approach to uncertainty assessment and reduction for terrestrial carbon cycle models.

Niche and neutral processes both shape community structure in parallelized, aerobic, single carbon-source enrichments

DOE Data Explorer

Flynn, Theodore M.; Koval, Jason C.; Greenwald, Stephanie M.; Owens, Sarah M.; Kemner, Kenneth M.; Antonopoulos, Dionysios A.

2017-01-01

We present DNA sequence data in FASTA-formatted files from aerobic environmental microcosms inoculated with a sole carbon source. DNA sequences are of 16S rRNA genes present in DNA extracted from each microcosm along with the environmental samples (soil, water) used to inoculate them. These samples were sequenced using the Illumina MiSeq platform at the Environmental Sample Preparation and Sequencing Facility at Argonne National Laboratory. This data is compatible with standard microbiome analysis pipelines (e.g., QIIME, mothur, etc.).

Biomass burning losses of carbon estimated from ecosystem modeling and satellite data analysis for the Brazilian Amazon region

NASA Astrophysics Data System (ADS)

Potter, Christopher; Brooks Genovese, Vanessa; Klooster, Steven; Bobo, Matthew; Torregrosa, Alicia

To produce a new daily record of gross carbon emissions from biomass burning events and post-burning decomposition fluxes in the states of the Brazilian Legal Amazon (Instituto Brasileiro de Geografia e Estatistica (IBGE), 1991. Anuario Estatistico do Brasil, Vol. 51. Rio de Janeiro, Brazil pp. 1-1024). We have used vegetation greenness estimates from satellite images as inputs to a terrestrial ecosystem production model. This carbon allocation model generates new estimates of regional aboveground vegetation biomass at 8-km resolution. The modeled biomass product is then combined for the first time with fire pixel counts from the advanced very high-resolution radiometer (AVHRR) to overlay regional burning activities in the Amazon. Results from our analysis indicate that carbon emission estimates from annual region-wide sources of deforestation and biomass burning in the early 1990s are apparently three to five times higher than reported in previous studies for the Brazilian Legal Amazon (Houghton et al., 2000. Nature 403, 301-304; Fearnside, 1997. Climatic Change 35, 321-360), i.e., studies which implied that the Legal Amazon region tends toward a net-zero annual source of terrestrial carbon. In contrast, our analysis implies that the total source fluxes over the entire Legal Amazon region range from 0.2 to 1.2 Pg C yr -1, depending strongly on annual rainfall patterns. The reasons for our higher burning emission estimates are (1) use of combustion fractions typically measured during Amazon forest burning events for computing carbon losses, (2) more detailed geographic distribution of vegetation biomass and daily fire activity for the region, and (3) inclusion of fire effects in extensive areas of the Legal Amazon covered by open woodland, secondary forests, savanna, and pasture vegetation. The total area of rainforest estimated annually to be deforested did not differ substantially among the previous analyses cited and our own.

High-resolution (30 m), annual (1986 - 2010) carbon stocks and fluxes for southeastern US forests derived from remote sensing, inventory data, and a carbon cycle model

NASA Astrophysics Data System (ADS)

Gu, H.; Zhou, Y.; Williams, C. A.

2016-12-01

Disturbance events are highly heterogeneous in space and time, impacting forest carbon dynamics and challenging the quantification and reporting of carbon stocks and flux. This study documents annual carbon stocks and fluxes from 1986 and 2010 mapped at 30-m resolution across southeastern US forests, characterizing how they respond to disturbances and ensuing regrowth. Forest inventory data (FIA) are used to parameterize a carbon cycle model (CASA) to represent post-disturbance carbon trajectories of carbon pools and fluxes for harvest, fire and bark beetle disturbances of varying severity and across forest types and site productivity settings. Time since disturbance at 30 meters is inferred from two remote-sensing data sources: disturbance year (NAFD, MTBS and ADS) and biomass (NBCD 2000) intersected with inventory-derived curves of biomass accumulation with stand age. All of these elements are combined to map carbon stocks and fluxes at a 30-m resolution for the year 2010, and to march backward in time for continuous, annual reporting. Results include maps of annual carbon stocks and fluxes for forests of the southeastern US, and analysis of spatio-temporal patterns of carbon sources/sinks at local and regional scales.

Searching for Reduced Carbon on the Surface of Mars: The SAM Combustion Experiment

NASA Technical Reports Server (NTRS)

Stern, J. C.; Malespin, C. A.; Mahaffy, P. R.; Webster, C. R.; Eigenbrode, J. L.; Archer, P. D., Jr.; Brunner, A. E.; Freissinet, C.; Franz, H. B.; Glavin, D. P.;

Carbon influx studies in the main chamber of ASDEX Upgrade

NASA Astrophysics Data System (ADS)

Pütterich, T.; Dux, R.; Gafert, J.; Kallenbach, A.; Neu, R.; Pugno, R.; Yoon, S. W.; ASDEX Upgrade Team

2003-10-01

Carbon sources in the main chamber of ASDEX Upgrade, especially the 12 guard limiters at the low field side (LFS), were determined spectroscopically using recently installed lines of sight. Absolute photon fluxes were measured for spectral lines in the visible wavelength range referring to all spin systems of C+1 and C+2. A simple transport model for carbon enabled the simulation of the radial distribution of carbon radiation and the determination of the effective inverse photon efficiency, which was used for the evaluation of ion fluxes. The model also predicts the fraction of eroded particles that are transported out of the plasma before further ionization occurs. Comparison of the calculated losses with measurements showed good agreement in L-mode cases, whereas in H-mode cases the CIII/CII radiation ratio was too high by a factor 1.5. The contribution of each spin system to the ion flux was independently measured. For C+1 and C+2 the spin system distribution was found to be close to equilibrium. The line-of-sight-integrated photon fluxes were spatially separated for many lines of sight by Zeeman-analysis and differential measurements. This allowed us to determine the total influx from the high field side and LFS. Surprisingly, the carbon source at the inner heatshield was larger than the carbon influx from the limiter source at the LFS. This is very pronounced for the H-mode case investigated, where 60-80% of the carbon atoms emerge from the heatshield. This source is due to recycling or re-erosion of carbon, which probably originates from the limiters, because ap85% of the heatshield area consisted of tungsten coated tiles.

Quantifying Sources and Fluxes of Aquatic Carbon in U.S. Streams and Reservoirs Using Spatially Referenced Regression Models

NASA Astrophysics Data System (ADS)

Boyer, E. W.; Smith, R. A.; Alexander, R. B.; Schwarz, G. E.

2004-12-01

Organic carbon (OC) is a critical water quality characteristic in riverine systems that is an important component of the aquatic carbon cycle and energy balance. Examples of processes controlled by OC interactions are complexation of trace metals; enhancement of the solubility of hydrophobic organic contaminants; formation of trihalomethanes in drinking water; and absorption of visible and UV radiation. Organic carbon also can have indirect effects on water quality by influencing internal processes of aquatic ecosystems (e.g. photosynthesis and autotrophic and heterotrophic activity). The importance of organic matter dynamics on water quality has been recognized, but challenges remain in quantitatively addressing OC processes over broad spatial scales in a hydrological context. In this study, we apply spatially referenced watershed models (SPARROW) to statistically estimate long-term mean-annual rates of dissolved- and total- organic carbon export in streams and reservoirs across the conterminous United States. We make use of a GIS framework for the analysis, describing sources, transport, and transformations of organic matter from spatial databases providing characterizations of climate, land use, primary productivity, topography, soils, and geology. This approach is useful because it illustrates spatial patterns of organic carbon fluxes in streamflow, highlighting hot spots (e.g., organic-rich environments in the southeastern coastal plain). Further, our simulations provide estimates of the relative contributions to streams from allochthonous and autochthonous sources. We quantify surface water fluxes of OC with estimates of uncertainty in relation to the overall US carbon budget; our simulations highlight that aquatic sources and sinks of OC may be a more significant component of regional carbon cycling than was previously thought. Further, we are using our simulations to explore the potential role of climate and other changes in the terrestrial environment on OC fluxes in aquatic systems.

Elucidating the Role of Carbon Sources on Abiotic and Biotic Release of Arsenic into Cambodian Aquifers

NASA Astrophysics Data System (ADS)

Koeneke, M.

2017-12-01

Arsenic (As) is a naturally occurring contaminant in Cambodia that has been contaminating well-water sources of millions of people. Commonly, studies look into the biotic factors that cause the arsenic to be released from aquifer sediments to groundwater. However, abiotic release of As from sediments, though little studied, may also play key roles in As contamination of well water. The goal of this research is to quantitatively compare organic-carbon mediated abiotic and biotic release of arsenic from sediments to groundwater. Batch anaerobic incubation experiments under abiotic (sodium azide used to immobilize microbes) and biotic conditions were conducted using Cambodian aquifer sediments, four different organic carbon sources (sodium lactate, sodium citrate, sodium oxalate, and humic acid), and six different carbon concentrations (0, 1, 2.5, 5, 10, 25mg C/L). Dissolved arsenic, iron(Fe), and manganese(Mn) concentrations in the treatments were measured 112 days . In addition, sediment and solution carbon solution was measured . Collectively, these show how different carbon sources, different carbon concentrations, and how abiotic and biotic factors impact the release of arsenic from Cambodian sediments into aquifers. Overall, an introduction of organic carbon to the soil increases the amount of As released from the sediment. The biotic + abiotic and abiotic conditions seemed to play a minimal role in the amount of As released. Dissolved species analysis showed us that 100% of the As was As(V), Our ICP-MS results vary due to the heterogeneity of samples, but when high levels are Fe are seen in solution, we also see high levels of As. We also see higher As concentrations when there is a smaller amount of Mn in solution.

Tectonic Reorganization and the Cause of Paleocene and Eocene pCO2 Anomalies

NASA Astrophysics Data System (ADS)

Austermann, Jacqueline; Carter, Laura B.; Middleton, Jennifer; Stellmann, Jessica; Pyle, Lacey

2017-04-01

Oxygen isotope records reveal that deep-sea temperatures were relatively stable in the early and mid Paleocene before they rose by approx. 4°C to peak in the early Eocene. This Early Eocene Climate Optimum was followed by a 17 Myr cooling trend that led to the onset of Antarctic glaciation at the end of the Eocene. Several studies have examined the potential influence of perturbations to the sinks and sources of atmospheric carbon as mechanisms for the temperature drawdown over the Eocene. Examination of the changing magnitude of carbon sinks has focused on the importance of increased weathering associated with the uplift of the Tibetan plateau (Raymo and Ruddiman, 1992), the continental drift of basaltic provinces through the equatorial humid belt (Kent and Muttoni, 2013), or the emplacement of ophiolites during arc-continent collision in the face of a closing Tethys ocean (Jagoutz et al., 2016). With respect to carbon sources, the shutdown of Tethys subduction and related arc volcanism has been argued to significantly decrease carbon emissions and consequently global temperatures (Hoareau et al., 2015). In this study, we re-assess and quantify proposed atmospheric carbon sinks and sources to obtain an integrated picture of carbon flux changes over the Paleocene and Eocene and to estimate the relative importance of different mechanisms. To constrain carbon sources, we attempt to calculate the outgassing associated with large igneous provinces, mid-ocean ridges and volcanic arcs. We use plate reconstructions to track changes in length and divergence / convergence rates at plate boundaries as well as account for the onset and extinction of volcanic arcs. To constrain carbon sinks, we account for the sequestering of carbon due to silicate weathering and organic carbon burial. We again make use of plate reconstructions to trace highly weatherable arc systems and basaltic extrusions through the tropical humid belt and to assess the interplay between warmer Eocene climates and organic carbon burial due to higher productivity. With this analysis we estimate the possible magnitudes and timescales for carbon fluxes associated with the above factors and compare our calculated rates of carbon sinks/sources to the observed change in pCO2 and global temperature across the Paleocene and Eocene.

Economic approach to assess the forest carbon implications of biomass energy.

PubMed

Daigneault, Adam; Sohngen, Brent; Sedjo, Roger

2012-06-05

There is widespread concern that biomass energy policy that promotes forests as a supply source will cause net carbon emissions. Most of the analyses that have been done to date, however, are biological, ignoring the effects of market adaptations through substitution, net imports, and timber investments. This paper uses a dynamic model of forest and land use management to estimate the impact of United States energy policies that emphasize the utilization of forest biomass on global timber production and carbon stocks over the next 50 years. We show that when market factors are included in the analysis, expanded demand for biomass energy increases timber prices and harvests, but reduces net global carbon emissions because higher wood prices lead to new investments in forest stocks. Estimates are sensitive to assumptions about whether harvest residues and new forestland can be used for biomass energy and the demand for biomass. Restricting biomass energy to being sourced only from roundwood on existing forestland can transform the policy from a net sink to a net source of emissions. These results illustrate the importance of capturing market adjustments and a large geographic scope when measuring the carbon implications of biomass energy policies.

Assessment of Blue Carbon Storage by Baja California (Mexico) Tidal Wetlands and Evidence for Wetland Stability in the Face of Anthropogenic and Climatic Impacts

PubMed Central

Watson, Elizabeth Burke

2017-01-01

Although saline tidal wetlands cover less than a fraction of one percent of the earth’s surface (~0.01%), they efficiently sequester organic carbon due to high rates of primary production coupled with surfaces that aggrade in response to sea level rise. Here, we report on multi-decadal changes (1972–2008) in the extent of tidal marshes and mangroves, and characterize soil carbon density and source, for five regions of tidal wetlands located on Baja California’s Pacific coast. Land-cover change analysis indicates the stability of tidal wetlands relative to anthropogenic and climate change impacts over the past four decades, with most changes resulting from natural coastal processes that are unique to arid environments. The disturbance of wetland soils in this region (to a depth of 50 cm) would liberate 2.55 Tg of organic carbon (C) or 9.36 Tg CO2eq. Based on stoichiometry and carbon stable isotope ratios, the source of organic carbon in these wetland sediments is derived from a combination of wetland macrophyte, algal, and phytoplankton sources. The reconstruction of natural wetland dynamics in Baja California provides a counterpoint to the history of wetland destruction elsewhere in North America, and measurements provide new insights on the control of carbon sequestration in arid wetlands. PMID:29295540

How organic carbon derived from multiple sources contributes to carbon sequestration processes in a shallow coastal system?

PubMed Central

Watanabe, Kenta; Kuwae, Tomohiro

2015-01-01

Carbon captured by marine organisms helps sequester atmospheric CO2, especially in shallow coastal ecosystems, where rates of primary production and burial of organic carbon (OC) from multiple sources are high. However, linkages between the dynamics of OC derived from multiple sources and carbon sequestration are poorly understood. We investigated the origin (terrestrial, phytobenthos derived, and phytoplankton derived) of particulate OC (POC) and dissolved OC (DOC) in the water column and sedimentary OC using elemental, isotopic, and optical signatures in Furen Lagoon, Japan. Based on these data analysis, we explored how OC from multiple sources contributes to sequestration via storage in sediments, water column sequestration, and air–sea CO2 exchanges, and analyzed how the contributions vary with salinity in a shallow seagrass meadow as well. The relative contribution of terrestrial POC in the water column decreased with increasing salinity, whereas autochthonous POC increased in the salinity range 10–30. Phytoplankton-derived POC dominated the water column POC (65–95%) within this salinity range; however, it was minor in the sediments (3–29%). In contrast, terrestrial and phytobenthos-derived POC were relatively minor contributors in the water column but were major contributors in the sediments (49–78% and 19–36%, respectively), indicating that terrestrial and phytobenthos-derived POC were selectively stored in the sediments. Autochthonous DOC, part of which can contribute to long-term carbon sequestration in the water column, accounted for >25% of the total water column DOC pool in the salinity range 15–30. Autochthonous OC production decreased the concentration of dissolved inorganic carbon in the water column and thereby contributed to atmospheric CO2 uptake, except in the low-salinity zone. Our results indicate that shallow coastal ecosystems function not only as transition zones between land and ocean but also as carbon sequestration filters. They function at different timescales, depending on the salinity, and OC sources. PMID:25880367

Non-Destructive X-ray Computed Tomography (XCT) of Gas Hydrate Bearing Fractures in Marine Sediment

NASA Astrophysics Data System (ADS)

Oti, E.; Buchwalter, E.; Cook, A.; Crandall, D.

2017-12-01

Hydrate-filled fractures are found in many environments, both related to methane vents and constrained to lithologic layers; how hydrate filled fractures form in layered environments is not well understood. We focus on understanding hydrate origins and fracture formation by examining hydrate-bearing fractures in conventional cores taken from Gulf of Mexico sites from JIP Leg 1 and UT-GOM, Keathley Canyon 151. There are two main methane sources available for hydrate formation. The first is the hydrocarbon reservoir underlying the Gulf sediments. This reservoir formed when deeply buried organic matter of high molecular weight was exposed to high temperature and pressures and degraded. A second source is the biogenesis of organic material, which occurs when microbial activity breaks down organic materials. Biogenic methane is more enriched in lighter carbon isotopes as the reduction or fermentation reactions preferentially consume lighter carbon isotopes. As a result, we hypothesize that sediment surrounding biogenically derived methane will have heavier carbon isotopes when compared to non-host sediment, due to the consumption of the lighter carbon isotopes during methanogenesis. We use non-destructive X-ray Computed Tomography (XCT) scanning to visualize and identify hydrate-bearing fractures. The presence of hydrate fractures is further confirmed with a salinity analysis, as hydrate dissociation freshens the pore water and lowers the salinity. After hydrate fracture location is inferred, carbon isotope analysis is used to identify hydrocarbon source. XCT scans of Keathley Canyon core JIP-1 17H-4 revealed 10 total fractures, five of which XCT and salinity analysis indicated as formerly containing hydrate. All ten fractures, in addition to background sediment, underwent a carbon isotope analysis in which organic isotopes were measured. In the background sediment and the non hydrate-bearing fractures, DOC values were relatively light, with dC13 percentages ranging from -27.8% to -30.8%. In the five hydrate fracture regions, DOC was comparatively heavy, with DOC dC13 values ranging from -23.2% to -30.3%. These values suggest that biogenic methane was formed adjacent to the fracture and likely migrated into the hydrate filled fracture.

Integrated analysis of 454 and Illumina transcriptomic sequencing characterizes carbon flux and energy source for fatty acid synthesis in developing Lindera glauca fruits for woody biodiesel.

PubMed

Lin, Zixin; An, Jiyong; Wang, Jia; Niu, Jun; Ma, Chao; Wang, Libing; Yuan, Guanshen; Shi, Lingling; Liu, Lili; Zhang, Jinsong; Zhang, Zhixiang; Qi, Ji; Lin, Shanzhi

2017-01-01

Lindera glauca fruit with high quality and quantity of oil has emerged as a novel potential source of biodiesel in China, but the molecular regulatory mechanism of carbon flux and energy source for oil biosynthesis in developing fruits is still unknown. To better develop fruit oils of L. glauca as woody biodiesel, a combination of two different sequencing platforms (454 and Illumina) and qRT-PCR analysis was used to define a minimal reference transcriptome of developing L. glauca fruits, and to construct carbon and energy metabolic model for regulation of carbon partitioning and energy supply for FA biosynthesis and oil accumulation. We first analyzed the dynamic patterns of growth tendency, oil content, FA compositions, biodiesel properties, and the contents of ATP and pyridine nucleotide of L. glauca fruits from seven different developing stages. Comprehensive characterization of transcriptome of the developing L. glauca fruit was performed using a combination of two different next-generation sequencing platforms, of which three representative fruit samples (50, 125, and 150 DAF) and one mixed sample from seven developing stages were selected for Illumina and 454 sequencing, respectively. The unigenes separately obtained from long and short reads (201, and 259, respectively, in total) were reconciled using TGICL software, resulting in a total of 60,031 unigenes (mean length = 1061.95 bp) to describe a transcriptome for developing L. glauca fruits. Notably, 198 genes were annotated for photosynthesis, sucrose cleavage, carbon allocation, metabolite transport, acetyl-CoA formation, oil synthesis, and energy metabolism, among which some specific transporters, transcription factors, and enzymes were identified to be implicated in carbon partitioning and energy source for oil synthesis by an integrated analysis of transcriptomic sequencing and qRT-PCR. Importantly, the carbon and energy metabolic model was well established for oil biosynthesis of developing L. glauca fruits, which could help to reveal the molecular regulatory mechanism of the increased oil production in developing fruits. This study presents for the first time the application of an integrated two different sequencing analyses (Illumina and 454) and qRT-PCR detection to define a minimal reference transcriptome for developing L. glauca fruits, and to elucidate the molecular regulatory mechanism of carbon flux control and energy provision for oil synthesis. Our results will provide a valuable resource for future fundamental and applied research on the woody biodiesel plants.

Mesoscale carbon sequestration site screening and CCS infrastructure analysis.

PubMed

Keating, Gordon N; Middleton, Richard S; Stauffer, Philip H; Viswanathan, Hari S; Letellier, Bruce C; Pasqualini, Donatella; Pawar, Rajesh J; Wolfsberg, Andrew V

2011-01-01

We explore carbon capture and sequestration (CCS) at the meso-scale, a level of study between regional carbon accounting and highly detailed reservoir models for individual sites. We develop an approach to CO(2) sequestration site screening for industries or energy development policies that involves identification of appropriate sequestration basin, analysis of geologic formations, definition of surface sites, design of infrastructure, and analysis of CO(2) transport and storage costs. Our case study involves carbon management for potential oil shale development in the Piceance-Uinta Basin, CO and UT. This study uses new capabilities of the CO(2)-PENS model for site screening, including reservoir capacity, injectivity, and cost calculations for simple reservoirs at multiple sites. We couple this with a model of optimized source-sink-network infrastructure (SimCCS) to design pipeline networks and minimize CCS cost for a given industry or region. The CLEAR(uff) dynamical assessment model calculates the CO(2) source term for various oil production levels. Nine sites in a 13,300 km(2) area have the capacity to store 6.5 GtCO(2), corresponding to shale-oil production of 1.3 Mbbl/day for 50 years (about 1/4 of U.S. crude oil production). Our results highlight the complex, nonlinear relationship between the spatial deployment of CCS infrastructure and the oil-shale production rate.

Effects of mining activities on evolution of water chemistry in coal-bearing aquifers in karst region of Midwestern Guizhou, China: evidences from δ13C of dissolved inorganic carbon and δ34S of sulfate.

PubMed

Li, Qingguang; Wu, Pan; Zha, Xuefang; Li, Xuexian; Wu, Linna; Gu, Shangyi

2018-04-24

The generation of acid mine drainage (AMD) may accelerate watershed erosion and promote the migration of heavy metals, then threaten local ecosystems such as aquatic life and even human health. Previous studies have focused primarily on influence of AMD in surface environment. In order to reveal the acidizing processes in karst high-sulfur coalfield in Southwest China, this study, by contrast, focused on the hydrogeochemical evolution process and acidification mechanism of mine water in Zhijin coalfield, western Guizhou Province. The oxidation of pyrite and other sulfides induced strong acidification of mine water according to the water chemical analysis. As a result, a series of geochemical processes such as dissolution of carbonates and silicates, hydrolysis of metal ions, and degassing of CO 2 complicated water chemical evolution. The dissolution of silicates controlled the chemical composition of mine water, but more carbonates might be dissolved during the acidification of mine water. The sources of sulfate are quite different in water samples collected from the two selected mine. According to sulfur isotope analysis, the dissolution of gypsum is the primary source of sulfate in samples from Hongfa mine, whereas sulfide oxidation contributed a large amount of sulfate to the mine water in Fenghuangshan mine. The dissolution of carbonates should be an important source of DIC in mine water and CO 2 originating from organic mineralization might also have a certain contribution. This study elucidated the groundwater chemical evolution processes in high-sulfur coal-bearing strata and provided a foundation for further study of carbonates erosion and carbon emission during acidification of mine water.

Source apportionment of PM2.5 organic carbon in the San Joaquin Valley using monthly and daily observations and meteorological clustering.

PubMed

Skiles, Matthew J; Lai, Alexandra M; Olson, Michael R; Schauer, James J; de Foy, Benjamin

2018-06-01

Two hundred sixty-three fine particulate matter (PM 2.5 ) samples collected on 3-day intervals over a 14-month period at two sites in the San Joaquin Valley (SJV) were analyzed for organic carbon (OC), elemental carbon (EC), water soluble organic carbon (WSOC), and organic molecular markers. A unique source profile library was applied to a chemical mass balance (CMB) source apportionment model to develop monthly and seasonally averaged source apportionment results. Five major OC sources were identified: mobile sources, biomass burning, meat smoke, vegetative detritus, and secondary organic carbon (SOC), as inferred from OC not apportioned by CMB. The SOC factor was the largest source contributor at Fresno and Bakersfield, contributing 44% and 51% of PM mass, respectively. Biomass burning was the only source with a statistically different average mass contribution (95% CI) between the two sites. Wintertime peaks of biomass burning, meat smoke, and total OC were observed at both sites, with SOC peaking during the summer months. Exceptionally strong seasonal variation in apportioned meat smoke mass could potentially be explained by oxidation of cholesterol between source and receptor and trends in wind transport outlined in a Residence Time Analysis (RTA). Fast moving nighttime winds prevalent during warmer months caused local emissions to be replaced by air mass transported from the San Francisco Bay Area, consisting of mostly diluted, oxidized concentrations of molecular markers. Good agreement was observed between SOC derived from the CMB model and from non-biomass burning WSOC mass, suggesting the CMB model is sufficiently accurate to assist in policy development. In general, uncertainty in monthly mass values derived from daily CMB apportionments were lower than that of CMB results produced with monthly marker composites, further validating daily sampling methodologies. Strong seasonal trends were observed for biomass and meat smoke OC apportionment, and monthly mass averages had lowest uncertainty when derived from daily CMB apportionments. Copyright © 2018 Elsevier Ltd. All rights reserved.

Trophic characteristics of a mangrove fish community in Southwest Thailand: Important mangrove contribution and intraspecies feeding variability

NASA Astrophysics Data System (ADS)

Zagars, Matiss; Ikejima, Kou; Kasai, Akihide; Arai, Nobuaki; Tongnunui, Prasert

2013-03-01

Mangrove production has been found to make a major contribution to the nutrition of a fish community in the Sikao Creek mangrove estuary, Southwest Thailand. Gut content analysis and carbon and nitrogen stable isotope analysis were used to assess fish feeding behavior and trophic reliance on different primary producers (mangrove leaves, phytoplankton, microphytobenthos) focusing on 19 dominant fish species, and 4 potential fish food items. Cluster analysis identified 5 trophic groups and the IsoSource model indicated the importance of primary food sources in trophically supporting different fish species. Most analyzed fish species had carbon isotopic signatures that were more depleted than those reported in previous studies, and the IsoSource model indicated that mangrove leaves were an important primary food source. This may be a specific characteristic of our study site, which is not well connected to other productive coastal habitats that provide alternative primary food sources. Thus we suggest that food chains in trophically isolated mangrove estuaries of southwest Thailand are more dependent on mangrove tree production. We also assessed the relationship of individuality in fish feeding habits and variability of δ13C values and showed that several mangrove fish species have significant intraspecies variability in feeding habits, possibly due to high intraspecific competition.

Analysis of Shublik Formation rocks from Mt. Michelson quadrangle, Alaska

USGS Publications Warehouse

Detterman, Robert L.

1970-01-01

Analysis of 88 samples from the Shublik formation on Fire Creek, Mt. Michelson Quadrangle, Alaska, are presented in tabular form. The results include the determination of elements by semiquantitative spectrographic analysis, phosphate by X-ray fluorescence, carbon dioxide by acid decomposable carbonate, total carbon by induction furnace, carbonate carbon by conversion using the conversion factor of 0.2727 for amount of carbon in carbon dioxide, and organic carbon by difference. A seven- cycle semilogarithmic chart presents the data graphically and illustrates the range, mode, and mean for some of the elements. The chart shows, also, the approximate concentration of the same elements in rocks similar to the black shale and limestone of the Shublik Formation. Each sample represents 5 feet of section and is composed of rock chips taken at 1 - foot intervals. The samples are keyed into a stratigraphic column of the formation. Rocks of the Shublik Formation contain anomalously high concentrations of some of the elements. These same elements might be expected to be high in some of the petroleum from northern Alaska if the Shublik Formation is a source for this petroleum. Several of the stratigraphic intervals may represent, also, a low-grade phosphate deposit.

Advances in the Determination of the Speciation of the Carbon Associated with Biogenic Silica Produced by Plants

NASA Astrophysics Data System (ADS)

Masion, A.; Alexandre, A. E.; Ziarelli, F.; Viel, S.; Santos, G.

2016-12-01

Biogenic silica resulting from the precipitation of dissolved Si through biological processes in plants, often contains small amounts of occluded organic carbon. These phases, called phytoliths, have a long persistence in soils, making them tracers of past conditions. In this context, the knowledge of the carbon speciation associated with phytoliths bears significant importance in examining the carbon dynamics in soils. With carbon concentrations as low as the 0.1% range, examining the nature of organic carbon remains very challenging, and available tools (e.g. pyrolysis) are often prone to serious artifacts. Recent improvements of microwave sources enabled the application of the Dynamic Nuclear Polarization (DNP) technique to NMR, thereby establishing a new non-destructive tool for the qualitative and quantitative determination of the carbon speciation. Applied to the analysis of phytoliths, this method showed the presence of carbons from different sources within the sample: About 20% of the signal correspond to carbohydrates, and are assigned to photosynthetic carbon; the marked alkyl, N-alkyl and carbonyl signals indicate a significant proportion of proteins. This is consistent with the hypothesis that parts of the carbon associated with the phytoliths is imported into the host plant via uptake from the soil. Finally, lignins, glomalin-like and/or humic-like compounds are minor species associated with biogenic silica. This speciation was obtained overnight with a DNP-NMR set-up with an excellent sensitivity (few tens of weight ppm); the same spectrum on a standard NMR spectrometer would have required at least 250 days of data acquisition. The considerable gain in sensitivity associated with the use of DNP now makes NMR a relevant technique for the analysis of environmental samples.

Quantity of dates trumps quality of dates for dense Bayesian radiocarbon sediment chronologies - Gas ion source 14C dating instructed by simultaneous Bayesian accumulation rate modeling

NASA Astrophysics Data System (ADS)

Rosenheim, B. E.; Firesinger, D.; Roberts, M. L.; Burton, J. R.; Khan, N.; Moyer, R. P.

2016-12-01

Radiocarbon (14C) sediment core chronologies benefit from a high density of dates, even when precision of individual dates is sacrificed. This is demonstrated by a combined approach of rapid 14C analysis of CO2 gas generated from carbonates and organic material coupled with Bayesian statistical modeling. Analysis of 14C is facilitated by the gas ion source on the Continuous Flow Accelerator Mass Spectrometry (CFAMS) system at the Woods Hole Oceanographic Institution's National Ocean Sciences Accelerator Mass Spectrometry facility. This instrument is capable of producing a 14C determination of +/- 100 14C y precision every 4-5 minutes, with limited sample handling (dissolution of carbonates and/or combustion of organic carbon in evacuated containers). Rapid analysis allows over-preparation of samples to include replicates at each depth and/or comparison of different sample types at particular depths in a sediment or peat core. Analysis priority is given to depths that have the least chronologic precision as determined by Bayesian modeling of the chronology of calibrated ages. Use of such a statistical approach to determine the order in which samples are run ensures that the chronology constantly improves so long as material is available for the analysis of chronologic weak points. Ultimately, accuracy of the chronology is determined by the material that is actually being dated, and our combined approach allows testing of different constituents of the organic carbon pool and the carbonate minerals within a core. We will present preliminary results from a deep-sea sediment core abundant in deep-sea foraminifera as well as coastal wetland peat cores to demonstrate statistical improvements in sediment- and peat-core chronologies obtained by increasing the quantity and decreasing the quality of individual dates.

Determination of the origin of dissolved inorganic carbon in groundwater around a reclaimed landfill in Otwock using stable carbon isotopes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Porowska, Dorota, E-mail: dorotap@uw.edu.pl

Highlights: • Research showed the origin of DIC in the groundwater around a reclaimed landfill. • Carbon isotope was used to evaluate the contributions of carbon from different sources. • The leachate-contaminated water was isotopically distinct from the natural groundwater. • DIC in the natural groundwater comes from organic matter and dissolution of carbonates. • In the contaminated water, DIC comes from organic matter in the aquifer and landfill. - Abstract: Chemical and isotopic analyses of groundwater from piezometers located around a reclaimed landfill in Otwock (Poland) were performed in order to trace the origin of dissolved inorganic carbon (DIC)more » in the groundwater. Due to differences in the isotopic composition of carbon from different sources, an analysis of stable carbon isotopes in the groundwater, together with the Keeling plot approach and a two-component mixing model allow us to evaluate the relative contributions of carbon from these sources in the groundwater. In the natural (background) groundwater, DIC concentrations and the isotopic composition of DIC (δ{sup 13}C{sub DIC}) comes from two sources: decomposition of organic matter and carbonate dissolution within the aquifer sediments, whereas in the leachate-contaminated groundwater, DIC concentrations and δ{sup 13}C{sub DIC} values depend on the degradation of organic matter within the aquifer sediments and biodegradation of organic matter stored in the landfill. From the mixing model, about 4–54% of the DIC pool is derived from organic matter degradation and 96–46% from carbonate dissolution in natural conditions. In the leachate-contaminated groundwater, about 20–53% of the DIC is derived from organic matter degradation of natural origin and 80–47% from biodegradation of organic matter stored in the landfill. Partial pressure of CO{sub 2} (P CO{sub 2}) was generally above the atmospheric, hence atmospheric CO{sub 2} as a source of carbon in DIC pool was negligible in the aquifer. P CO{sub 2} values in the aquifer in Otwock were always one to two orders of magnitude above the atmospheric P CO{sub 2}, and thus CO{sub 2} escaped directly into the vadose zone.« less

Compositional Analysis of Fine Particulate Matter in Fairbanks, Alaska

NASA Astrophysics Data System (ADS)

Nattinger, K.; Simpson, W. R.; Huff, D.

2015-12-01

Fairbanks, AK experiences extreme pollution episodes that result in winter violations of the fine particulate matter (PM2.5) National Ambient Air Quality Standards. This poses a significant health risk for the inhabitants of the area. These high levels result from trapping of pollution in a very shallow boundary layer due to local meteorology, but the role of primary (direct emission) of particulate matter versus secondary production (in the atmosphere) of particulate matter is not understood. Analysis of the PM2.5 composition is being conducted to provide insight into sources, trends, and chemistry. Methods are developed to convert carbon data from IMPROVE (post-2009 analysis method) to NIOSH (pre-2009 method) utilizing blank subtraction, sampler bias adjustment, and inter-method correlations from co-located samples. By converting all carbon measurements to a consistent basis, long-term trends can be analyzed. The approach shows excellent mass closure between PM2.5 mass reconstructed from constituents and gravimetric-analyzed mass. This approach could be utilized in other US locations where the carbon analysis methods also changed. Results include organic and inorganic fractional mass percentages, analyzed over an eight-year period for two testing sites in Fairbanks and two in the nearby city of North Pole. We focus on the wintertime (Nov—Feb) period when most air quality violations occur and find that the particles consist primarily of organic carbon, with smaller percentages of sulfate, elemental carbon, ammonium, and nitrate. The Fairbanks area PM2.5 organic carbon / elemental carbon partitioning matches the source profile of wood smoke. North Pole and Fairbanks PM2.5 have significant compositional differences, with North Pole having a larger percentage of organic matter. Mass loadings in SO42-, NO3-, and total PM2.5 mass correlate with temperature. Multi-year temporal trends show little if any change with a strong effect from temperature. Insights from this study regarding primary versus possible secondary PM2.5 production processes can help in identifying effective PM2.5 control strategies.

A Novel Method for Analysis of Dissolved Inorganic Carbon Concentration and δ13C by Cavity Ring-Down Spectroscopy

NASA Astrophysics Data System (ADS)

Smith, E.; Gonneea, M. E.; Boze, L. G.; Casso, M.; Pohlman, J.

2017-12-01

Dissolved inorganic carbon (DIC) is the largest pool of carbon in the oceans and is where about half of anthropogenic carbon dioxide (CO2) emissions are being sequestered. Determining the concentration and stable carbon isotopic content (δ13C) of DIC allows us to delineate carbon sources that contribute to marine DIC. A simple and reliable method for measuring DIC concentration and δ13C can be used to apportion contributions from external sources and identify effects from biogeochemical reactions that contribute or remove DIC. The U.S. Geological Survey has developed a discrete sample analysis module (DSAM) that interfaces to a Picarro G-2201i cavity ring-down spectrometer (CRDS, Picarro Inc.) to analyze CO2 and methane concentrations and δ13C from discrete gas samples. In this study, we adapted the USGS DSAM-CRDS analysis system to include an AutoMate prep device (Automate FX, Inc.) for analysis of DIC concentration and δ13C from aqueous samples. The Automate prep device was modified to deliver CO2 extracted from DIC to the DSAM, which conditions and transfers the gas to the CRDS. LabVIEW software (National Instruments) triggers the Automate Prep device, controls the DSAM and collects data from the CRDS. CO2 mass concentration data are obtained by numerical integration of the CO2 volumetric concentrations output by the CRDS and subsequent comparison to standard materials. CO2 carbon isotope values from the CRDS (iCO2) are converted to δ13C values using a slope and offset correction calibration procedure. The system design and operation was optimized using sodium bicarbonate (NaHCO3) standards and a certified reference material. Surface water and pore water samples collected from Sage Lot Pond, a salt marsh in Cape Cod MA, have been analyzed for concentration by coulometry and δ13C by isotope ratio mass spectrometry and will be used to validate the DIC-DSAM-CRDS method for field applications.

Isotopic Analysis of Sporocarp Protein and Structural Material Improves Resolution of Fungal Carbon Sources

PubMed Central

Chen, Janet; Hofmockel, Kirsten S.; Hobbie, Erik A.

2016-01-01

Fungal acquisition of resources is difficult to assess in the field. To determine whether fungi received carbon from recent plant photosynthate, litter or soil-derived organic (C:N bonded) nitrogen, we examined differences in δ13C among bulk tissue, structural carbon, and protein extracts of sporocarps of three fungal types: saprotrophic fungi, fungi with hydrophobic ectomycorrhizae, or fungi with hydrophilic ectomycorrhizae. Sporocarps were collected from experimental plots of the Duke Free-air CO2 enrichment experiment during and after CO2 enrichment. The differential 13C labeling of ecosystem pools in CO2 enrichment experiments was tracked into fungi and provided novel insights into organic nitrogen use. Specifically, sporocarp δ13C as well as δ15N of protein and structural material indicated that fungi with hydrophobic ectomycorrhizae used soil-derived organic nitrogen sources for protein carbon, fungi with hydrophilic ectomycorrhizae used recent plant photosynthates for protein carbon and both fungal groups used photosynthates for structural carbon. Saprotrophic fungi depended on litter produced during fumigation for both protein and structural material. PMID:28082951

A large column analog experiment of stable isotope variations during reactive transport: II. Carbon mass balance, microbial community structure and predation

NASA Astrophysics Data System (ADS)

Druhan, Jennifer L.; Bill, Markus; Lim, HsiaoChien; Wu, Cindy; Conrad, Mark E.; Williams, Kenneth H.; DePaolo, Donald J.; Brodie, Eoin L.

2014-01-01

Here we report a combined analysis of carbon mass balance based on isotopic labeling and microbiological characterization during organic carbon stimulated bioreduction of a subsurface sediment in a large laboratory column experimental system. This combination of approaches allows quantification of both the cycling of carbon through multiple redox pathways and the associated spatial and temporal evolution of bacterial communities in response to this nutrient source. Carbon isotope mass balance facilitated by the use of 13C-labeled acetate as the electron donor showed evidence for a net loss of sediment organic carbon over the course of the amendment experiment. Furthermore, these data clearly demonstrated a source of isotopically labeled inorganic carbon that was not attributable to primary metabolism by acetate-oxidizing microorganisms. Fluid samples collected weekly over the duration of the 43-day amendment at <20 cm intervals along the flow path were analyzed for microbial composition by pyrosequencing of ribosomal RNA genes. The microbial community composition was transient, with distinct occurrences of Azoarcus, Geobacter and multiple sulfate reducing species over the course of the experiment. In combination with DNA sequencing data, the anomalous carbon cycling process is shown to occur exclusively during the period of predominant Geobacter species growth. Pyrosequencing indicated, and targeted cloning and sequencing confirmed the presence of several bacteriovorous protozoa, including species of the Breviata, Planococcus and Euplotes genera. Cloning and qPCR analysis demonstrated that Euplotes species were most abundant and displayed a growth trajectory that closely followed that of the Geobacter population. These results suggest a previously undocumented secondary turnover of biomass carbon related to protozoan grazing that was not sufficiently prevalent to be observed in bulk concentrations of carbon species in the system, but was clearly identified in the partitioning of carbon isotopes. This study demonstrates evidence for predator-prey relationships that impact subsurface microbial community dynamics and provides a novel indication of the impact of this relationship on the flux of carbon through a system via the microbial biomass pool. Overall, our approach provides high temporal and spatial sampling resolution at field relevant flow rates, while minimizing effects of mixing and transverse dispersion. The result is a quantitative carbon budget accounting for a diversity of processes that should be considered for inclusion in reactive transport models that aim to predict carbon turnover, nutrient flux, and redox reactions in natural and stimulated subsurface systems. the mobilization of previously stabilized, sediment-bound carbon; a carbon mass balance for a through-flowing sediment column over the course of a 43-day amendment using 13C-labeled acetate; a phylogenetic microbial community structure at <20 cm sampling resolution with distance away from the organic carbon source weekly over the 43-day amendment; protozoan grazing on the active Geobacteraceae population and the rapid turnover of microbial biomass carbon as a secondary cycling pathway. Such a high resolution, combined analysis of microbial populations and the associated carbon mass balance in a through-flowing system at field relevant flow rates provides novel, quantitative insights into the interface between biogeochemical cycling and bulk carbon fluxes in the near-surface environment.

Attribution of Net Carbon Change by Disturbance Type across Forest Lands of the Continental United States

NASA Astrophysics Data System (ADS)

Hagen, S. C.; Harris, N.; Saatchi, S. S.; Domke, G. M.; Woodall, C. W.; Pearson, T.

2016-12-01

We generated spatially comprehensive maps of carbon stocks and net carbon changes from US forestlands between 2005 and 2010 and attributed the changes to natural and anthropogenic processes. The prototype system created to produce these maps is designed to assist with national GHG inventories and support decisions associated with land management. Here, we present the results and methodological framework of our analysis. In summary, combining estimates of net C losses and gains results in net carbon change of 269±49 Tg C yr-1 (sink) in the coterminous US forest land, with carbon loss from harvest acting as the predominent source process.

Analysis of feature selection with Probabilistic Neural Network (PNN) to classify sources influencing indoor air quality

NASA Astrophysics Data System (ADS)

Saad, S. M.; Shakaff, A. Y. M.; Saad, A. R. M.; Yusof, A. M.; Andrew, A. M.; Zakaria, A.; Adom, A. H.

2017-03-01

There are various sources influencing indoor air quality (IAQ) which could emit dangerous gases such as carbon monoxide (CO), carbon dioxide (CO2), ozone (O3) and particulate matter. These gases are usually safe for us to breathe in if they are emitted in safe quantity but if the amount of these gases exceeded the safe level, they might be hazardous to human being especially children and people with asthmatic problem. Therefore, a smart indoor air quality monitoring system (IAQMS) is needed that able to tell the occupants about which sources that trigger the indoor air pollution. In this project, an IAQMS that able to classify sources influencing IAQ has been developed. This IAQMS applies a classification method based on Probabilistic Neural Network (PNN). It is used to classify the sources of indoor air pollution based on five conditions: ambient air, human activity, presence of chemical products, presence of food and beverage, and presence of fragrance. In order to get good and best classification accuracy, an analysis of several feature selection based on data pre-processing method is done to discriminate among the sources. The output from each data pre-processing method has been used as the input for the neural network. The result shows that PNN analysis with the data pre-processing method give good classification accuracy of 99.89% and able to classify the sources influencing IAQ high classification rate.

Tropical secondary forests regenerating after shifting cultivation in the Philippines uplands are important carbon sinks.

PubMed

Mukul, Sharif A; Herbohn, John; Firn, Jennifer

2016-03-08

In the tropics, shifting cultivation has long been attributed to large scale forest degradation, and remains a major source of uncertainty in forest carbon accounting. In the Philippines, shifting cultivation, locally known as kaingin, is a major land-use in upland areas. We measured the distribution and recovery of aboveground biomass carbon along a fallow gradient in post-kaingin secondary forests in an upland area in the Philippines. We found significantly higher carbon in the aboveground total biomass and living woody biomass in old-growth forest, while coarse dead wood biomass carbon was higher in the new fallow sites. For young through to the oldest fallow secondary forests, there was a progressive recovery of biomass carbon evident. Multivariate analysis indicates patch size as an influential factor in explaining the variation in biomass carbon recovery in secondary forests after shifting cultivation. Our study indicates secondary forests after shifting cultivation are substantial carbon sinks and that this capacity to store carbon increases with abandonment age. Large trees contribute most to aboveground biomass. A better understanding of the relative contribution of different biomass sources in aboveground total forest biomass, however, is necessary to fully capture the value of such landscapes from forest management, restoration and conservation perspectives.

Tropical secondary forests regenerating after shifting cultivation in the Philippines uplands are important carbon sinks

PubMed Central

Mukul, Sharif A.; Herbohn, John; Firn, Jennifer

2016-01-01

In the tropics, shifting cultivation has long been attributed to large scale forest degradation, and remains a major source of uncertainty in forest carbon accounting. In the Philippines, shifting cultivation, locally known as kaingin, is a major land-use in upland areas. We measured the distribution and recovery of aboveground biomass carbon along a fallow gradient in post-kaingin secondary forests in an upland area in the Philippines. We found significantly higher carbon in the aboveground total biomass and living woody biomass in old-growth forest, while coarse dead wood biomass carbon was higher in the new fallow sites. For young through to the oldest fallow secondary forests, there was a progressive recovery of biomass carbon evident. Multivariate analysis indicates patch size as an influential factor in explaining the variation in biomass carbon recovery in secondary forests after shifting cultivation. Our study indicates secondary forests after shifting cultivation are substantial carbon sinks and that this capacity to store carbon increases with abandonment age. Large trees contribute most to aboveground biomass. A better understanding of the relative contribution of different biomass sources in aboveground total forest biomass, however, is necessary to fully capture the value of such landscapes from forest management, restoration and conservation perspectives. PMID:26951761

Tropical secondary forests regenerating after shifting cultivation in the Philippines uplands are important carbon sinks

NASA Astrophysics Data System (ADS)

Mukul, Sharif A.; Herbohn, John; Firn, Jennifer

2016-03-01

In the tropics, shifting cultivation has long been attributed to large scale forest degradation, and remains a major source of uncertainty in forest carbon accounting. In the Philippines, shifting cultivation, locally known as kaingin, is a major land-use in upland areas. We measured the distribution and recovery of aboveground biomass carbon along a fallow gradient in post-kaingin secondary forests in an upland area in the Philippines. We found significantly higher carbon in the aboveground total biomass and living woody biomass in old-growth forest, while coarse dead wood biomass carbon was higher in the new fallow sites. For young through to the oldest fallow secondary forests, there was a progressive recovery of biomass carbon evident. Multivariate analysis indicates patch size as an influential factor in explaining the variation in biomass carbon recovery in secondary forests after shifting cultivation. Our study indicates secondary forests after shifting cultivation are substantial carbon sinks and that this capacity to store carbon increases with abandonment age. Large trees contribute most to aboveground biomass. A better understanding of the relative contribution of different biomass sources in aboveground total forest biomass, however, is necessary to fully capture the value of such landscapes from forest management, restoration and conservation perspectives.

Palynofacies assemblages reflect sources of organic matter in New Zealand fjords

NASA Astrophysics Data System (ADS)

Prebble, Joseph G.; Hinojosa, Jessica L.; Moy, Christopher M.

2018-02-01

Understanding sources and transport pathways of organic carbon in fjord systems is important to quantify carbon cycling in coastal settings. Provenance of surficial sediment organic carbon in Fiordland National Park (southwestern New Zealand) has previously been estimated using a range of techniques, including mixing models derived from stable isotopes and lipid biomarker distributions. Here, we present the first application of palynofacies to explore the sources of particulate organic carbon to five fjords along the SW margin of New Zealand, to further discriminate the provenance of organic carbon in the fjords. We find good correlation between isotopic-and biomarker-derived proxies for organic carbon provenance and our new palynofacies observations. We observe strong down-fjord gradients of decreasing terrestrially derived organic carbon further from the river inflow at fjord heads. Fjords with small catchments and minor fresh water inflow exhibit reversed gradients, indicating that volume of freshwater entering at the fjord head is a primary mechanism to transport particulates down fjord rather than local transport from fjord sides. The palynofacies data also confirmed previously recorded latitudinal trends (i.e. between fjords), of less frequent and more weathered terrestrially derived organic carbon in the southern fjords, consistent with enhanced marine inflow and longer transport times in the southern catchments. Dinocyst assemblages also exhibit a strong latitudinal gradient, with assemblages dominated by heterotrophic forms in the north. In addition to providing support for previous studies, this approach allows finer discrimination of terrestrial organic carbon than previously, for example variation of leaf material. This study demonstrates that visual palynofacies analysis is a valuable tool to pinpoint origins of organic carbon in fjord systems, providing different but complementary information to other proxies.

Oil-source correlations between the Mississippian Heath Shales and the reservoired oils in the Pennsylvanian Tyler Sands, Montana

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cole, G.A.; Drozd, R.J.; Daniel, J.A.

The Mississippi Heath Formation exposed in Fergus County, central Montana, is comprised predominantly of nearshore, marine, black, calcareous shales and carbonates with minor anhydrite and coal beds. The black shales and limestones have been considered as sources for shale oil via Fischer Assay and pyrolysis analysis. These shales are potential source units for the oils reservoired in the overlying Pennsylvanian Tyler Formation sands located 50 mi (80 km) to the east of the Fergus County Heath sediment studied. Heath Formation rocks from core holes were selectively sampled in 2-ft increments and analyzed for their source rock characteristics. Analyses include percentmore » total organic carbon (%TOC), Rock-Eval pyrolysis, pyrolysis-gas chromatography, and characterization of the total soluble extracts using carbon isotopes and gas chromatography-mass Spectrometry. Results indicated that the Heath was an excellent potential source unit that contained oil-prone, organic-rich (maximum of 17.6% TOC), calcareous, black shale intervals. The Heath and Tyler formations also contained intervals dominated by gas-prone, organic-rich shales of terrestrial origin. Three oils from the Tyler Formation sands in Musselshell and Rosebud counties were characterized by similar methods as the extracts. The oils were normally mature, moderate API gravity, moderate sulfur, low asphaltene crudes. Oil to source correlations between the Heath shale extracts and the oils indicated the Heath was an excellent candidate source rock for the Tyler reservoired oils. Conclusions were based on excellent matches between the carbon isotopes of the oils and the kerogen-kerogen pyrolyzates, and from the biomarkers.« less

Physical factors controlling carbon cycling dynamics in blackwater river-dominated and particle dominated estuaries

NASA Astrophysics Data System (ADS)

Arellano, A. R.; Bianchi, T. S.; Osburn, C. L.; D'Sa, E. J.; Oviedo-Vargas, D.; Ward, N. D.; Joshi, I.

2017-12-01

While most blue carbon habitat (wetlands, seagrass beds and mangroves) research has focused on carbon burial/stocks and habitat fragmentation of these communities, few studies have examined physical factors that control exports and losses of blue carbon sources of organic matter (OM) to adjacent coastal waters. Here, we report on spatiotemporal changes in the composition and concentration of dissolved organic carbon (DOC), particulate organic carbon (POC), particulate nitrogen, pCO2, δ13C-DOC, δ13C-POC, δ13C-CO2, dissolved lignin-phenols (dΣ8), particulate lignin-phenols (pΣ8) and carbon normalized dissolved and particulate lignin phenol yields (dΛ8 and pΛ8) in surface waters of the Apalachicola and Barataria bays in the Gulf of Mexico. Discriminant analysis described spatial variability along canonical axis I (24.4%) while temporal variability was explained by canonical axis II (23.2%). Apalachicola Bay was low in POC concentration and characterized by high values for pCO2, DOC, C:N, dΣ8 and (Ad:Al)V. The latter three parameters indicated a clear terrestrial source of OM at Apalachicola Bay reflecting the importance of riverine DOM inputs in this system. In contrast, Barataria Bay was characterized by high values for POC, C:V, S:V, and δ13C-POC, indicating blue-carbon sources due to a lack of direct river inputs and high prevalence of wetlands, some recently submerged. Extreme weather, such as intense precipitation events in Apalachicola Bay and enhanced northerly winds in Barataria Bay were characterized by δ13C-CO2, dΛ8, C:V (Barataria), and C:N (Apalachicola). Results indicate that such physical factors can exert strong control on OM sources and sinks across the gradient of coastal wetlands and shelf waters and lead to enhanced transfer and degradation of wetland-derived blue carbon in coastal waters.

Evaluation of thermal optical analysis method of elemental carbon for marine fuel exhaust.

PubMed

Lappi, Maija K; Ristimäki, Jyrki M

2017-12-01

The awareness of black carbon (BC) as the second largest anthropogenic contributor in global warming and an ice melting enhancer has increased. Due to prospected increase in shipping especially in the Arctic reliability of BC emissions and their invented amounts from ships is gaining more attention. The International Maritime Organization (IMO) is actively working toward estimation of quantities and effects of BC especially in the Arctic. IMO has launched work toward constituting a definition for BC and agreeing appropriate methods for its determination from shipping emission sources. In our study we evaluated the suitability of elemental carbon (EC) analysis by a thermal-optical transmittance (TOT) method to marine exhausts and possible measures to overcome the analysis interferences related to the chemically complex emissions. The measures included drying with CaSO 4, evaporation at 40-180ºC, H 2 O treatment, and variation of the sampling method (in-stack and diluted) and its parameters (e.g., dilution ratio, Dr). A reevaluation of the nominal organic carbon (OC)/EC split point was made. Measurement of residual carbon after solvent extraction (TC-C SOF ) was used as a reference, and later also filter smoke number (FSN) measurement, which is dealt with in a forthcoming paper by the authors. Exhaust sources used for collecting the particle sample were mainly four-stroke marine engines operated with variable loads and marine fuels ranging from light to heavy fuel oils (LFO and HFO) with a sulfur content range of <0.1-2.4% S. The results were found to be dependent on many factors, namely, sampling, preparation and analysis method, and fuel quality. It was found that the condensed H 2 SO 4 + H 2 O on the particulate matter (PM) filter had an effect on the measured EC content, and also promoted the formation of pyrolytic carbon (PyC) from OC, affecting the accuracy of EC determination. Thus, uncertainty remained regarding the EC results from HFO fuels. The work supports one part of the decision making in black carbon (BC) determination methodology. If regulations regarding BC emissions from marine engines will be implemented in the future, a well-defined and at best unequivocal method of BC determination is required for coherent and comparable emission inventories and estimating BC effects. As the aerosol from marine emission sources may be very heterogeneous and low in BC, special attention to the effects of sampling conditions and sample pretreatments on the validity of the results was paid in developing the thermal-optical analysis methodology (TOT).

Template confined synthesis of amorphous carbon nanotubes and its confocal Raman microscopy

DOE Office of Scientific and Technical Information (OSTI.GOV)

Maity, Supratim; Roychowdhury, Tuhin; Chattopadhyay, Kalyan Kumar, E-mail: kalyan-chattopadhyay@yahoo.com

2014-04-24

Amorphous carbon nanotubes (aCNTs) were synthesized by AAO (anodic aluminum oxide) template at a temperature 500 °C in nitrogen atmosphere using the citric acid as a carbon source without the help of any catalyst particles. Morphological analysis of the as prepared samples was carried out by field emission scanning electron microscopy (FESEM). Confocal Raman imaging has been studied and an attempt has been made to find out the graphitic (sp{sup 2}) and disordered phase of the CNTs.

Changes in soil microbial functional diversity and biochemical characteristics of tree peony with amendment of sewage sludge compost.

PubMed

Huang, Xiangdong; Xue, Dong; Xue, Lian

2015-08-01

A greenhouse experiment was conducted to investigate the impact of sewage sludge compost application on functional diversity of soil microbial communities, based on carbon source utilization, and biochemical characteristics of tree peony (Paeonia suffruticosa). Functional diversity was estimated with incubations in Biolog EcoPlates and well color development was used as the functional trait for carbon source utilization. The average well color development and Shannon index based on the carbon source utilization pattern in Biolog EcoPlates significantly increased with the increasing sludge compost application in the range of 0-45%, with a decreasing trend above 45%. Principal component analysis of carbon source utilization pattern showed that sludge compost application stimulated the utilization rate of D-cellobiose and α-D-lactose, while the utilization rate of β-methyl-D-glucoside, L-asparagine, L-serine, α-cyclodextrin, γ-hydroxybutyric acid, and itaconic acid gradually increased up to a sludge compost amendment dosage of 45% and then decreased above 45%. The chlorophyll content, antioxidase (superoxide dismutase, catalase, and peroxidase) activities, plant height, flower diameter, and flower numbers per plant of tree peony increased significantly with sludge compost dosage, reaching a peak value at 45 %, and then decreased with the exception that activity of superoxide dismutase and catalase did not vary significantly.

Interannual, seasonal, and retrospective analysis of the methane and carbon dioxide budgets of a temperate peatland

Treesearch

D.M. Olson; T.J. Griffis; A. Noormets; R. Kolka; J. Chen

2013-01-01

Three years (2009-2011) of near-continuous methane (CH4) and carbon dioxide (CO2) fluxes were measured with the eddy covariance (EC) technique at a temperate peatland located within the Marcell Experimental Forest, in northern Minnesota, USA. The peatland was a net source of CH4 and a net sink of CO...

Measurements of Carbon Dioxide, Methane, and Other Related Tracers at High Spatial and Temporal Resolution in an Urban Environment

NASA Astrophysics Data System (ADS)

Forgeron, J.; Yasuhara, S.; Rella, C.; Jacobson, G. A.; Chiao, S.

2012-12-01

Measurements of Carbon Dioxide, Methane, and Other Related Tracers at High Spatial and Temporal Resolution in an Urban Environment Jeff Forgeron1,2, Scott Yasuhara1,2, Chris Rella1, Gloria Jacobson1, Sen Chiao2 1Picarro Inc., 3105 Patrick Henry Drive, Santa Clara California 95054 USA 2San Jose State University, 1 Washington Square, San Jose California USA JeffAForgeron@gmail.com The ability to quantify sources and sinks of carbon dioxide and methane on the urban scale is essential for understanding the atmospheric drivers to global climate change. In the 'top-down' approach, overall carbon fluxes are determined by combining remote measurements of carbon dioxide concentrations with complex atmospheric transport models, and these emissions measurements are compared to 'bottom-up' predictions based on detailed inventories of the sources and sinks of carbon, both anthropogenic and biogenic in nature. This approach, which has proven to be effective at continental scales, becomes challenging to implement at urban scales, due to poorly understood atmospheric transport models and high variability of the emissions sources in space (e.g., factories, highways, green spaces) and time (rush hours, factory shifts and shutdowns, and diurnal and seasonal variation in residential energy use). New measurement and analysis techniques are required to make sense of the carbon dioxide signal in cities. Here we present detailed, high spatial- and temporal- resolution greenhouse gas measurements made by multiple Picarro-CRDS analyzers in Silicon Valley in California. Real-time carbon dioxide data from a 12-month period are combined with real-time carbon monoxide, methane, acetylene, and carbon-13 measurements to partition the observed carbon dioxide concentrations between different anthropogenic sectors (e.g., transport, residential) and biogenic sources. Real-time wind rose data are also combined with real-time methane data to help identify the direction of local emissions of methane. The ratio between carbon dioxide and carbon monoxide is shown to vary over more than a factor of two from season to season or even from day to night, indicating rapid but frequent shifts in the balance between different carbon dioxide sources. Additional information is given by the carbon-13 signature and by acetylene, a fossil fuel combustion tracer that provides complimentary information to carbon monoxide. In spring and summer, the combined signal of the urban center and the surrounding biosphere and urban green space is explored. These methods show great promise for identifying, quantifying, and partitioning urban-ecological (carbon) emissions. Figure 1: The left graph shows the change in diurnal cycle of CO2 (with the traffic signal removed) over a five month period. The right graph is the transit CO2 signal from weekdays and weekends, showing clear weekday enhancement of transit emissions.

Calcium absorbability from milk products, an imitation milk, and calcium carbonate

DOE Office of Scientific and Technical Information (OSTI.GOV)

Recker, R.R.; Bammi, A.; Barger-Lux, M.J.

Whole milk, chocolate milk, yogurt, imitation milk (prepared from dairy and nondairy products), cheese, and calcium carbonate were labeled with /sup 45/Ca and administered as a series of test meals to 10 healthy postmenopausal women. Carrier Ca content of the test meals was held constant at 250 mg and subjects fasted before each meal. The absorbability of Ca from the six sources was compared by measuring fractional absorption by the double isotope method. The mean absorption values for all six sources were tightly clustered between 21 and 26% and none was significantly different from the others using one-way analysis ofmore » variance. We conclude that none of the sources was significantly superior or inferior to the others.« less

Separating the air quality impact of a major highway and nearby sources by nonparametric trajectory analysis.

PubMed

Henry, Ronald C; Vette, Alan; Norris, Gary; Vedantham, Ram; Kimbrough, Sue; Shores, Richard C

2011-12-15

Nonparametric Trajectory Analysis (NTA), a receptor-oriented model, was used to assess the impact of local sources of air pollution at monitoring sites located adjacent to highway I-15 in Las Vegas, NV. Measurements of black carbon, carbon monoxide, nitrogen oxides, and sulfur dioxide concentrations were collected from December 2008 to December 2009. The purpose of the study was to determine the impact of the highway at three downwind monitoring stations using an upwind station to measure background concentrations. NTA was used to precisely determine the contribution of the highway to the average concentrations measured at the monitoring stations accounting for the spatially heterogeneous contributions of other local urban sources. NTA uses short time average concentrations, 5 min in this case, and constructed local back-trajectories from similarly short time average wind speed and direction to locate and quantify contributions from local source regions. Averaged over an entire year, the decrease of concentrations with distance from the highway was found to be consistent with previous studies. For this study, the NTA model is shown to be a reliable approach to quantify the impact of the highway on local air quality in an urban area with other local sources.

Electrochemical Characterization of Carbon Nanotubes for Fuel Cell MEA's

NASA Technical Reports Server (NTRS)

Panagaris, Jael; Loyselle, Patricia

2004-01-01

Single-walled and multi-walled carbon nanotubes from different sources have been evaluated before and after sonication to identify structural differences and evaluate electrochemical performance. Raman spectral analysis and cyclic voltammetry in situ with QCM were the principle means of evaluating the tubes. The raman data indicates that sonication in toluene modifies the structural properties of the nanotubes. Sonication also affects the electrochemical performance of single-walled nanotubes and the multi-walled tubes differently. The characterization of different types of carbon nanotubes leads up to identifying a potential candidate for incorporating carbon nanotubes for fuel cell MEA structures.

Impacts of disturbance history on annual carbon stocks and fluxes in southeastern US forests during 1986-2010 using remote sensing, forest inventory data, and a carbon cycle model

NASA Astrophysics Data System (ADS)

Gu, H.; Zhou, Y.; Williams, C. A.

2017-12-01

Accurate assessment of forest carbon storage and uptake is central to policymaking aimed at mitigating climate change and understanding the role forests play in the global carbon cycle. Disturbance events are highly heterogeneous in space and time, impacting forest carbon dynamics and challenging the quantification and reporting of carbon stocks and fluxes. This study documents annual carbon stocks and fluxes from 1986 and 2010 mapped at 30-m resolution across southeastern US forests, characterizing how they respond to disturbances and ensuing regrowth. Forest inventory data (FIA) are used to parameterize a carbon cycle model (CASA) to represent post-disturbance carbon trajectories of carbon pools and fluxes with time following harvest, fire and bark beetle disturbances of varying severity and across forest types and site productivity settings. Time since disturbance at 30 meters is inferred from two remote-sensing data sources: disturbance year (NAFD, MTBS and ADS) and biomass (NBCD 2000) intersected with FIA-derived curves of biomass accumulation with stand age. All of these elements are combined to map carbon stocks and fluxes at a 30-m resolution for the year 2010, and to march backward in time for continuous, annual reporting. Results include maps of annual carbon stocks and fluxes for forests of the southeastern US, and analysis of spatio-temporal patterns of carbon sources/sinks at local and regional scales.

Study utilization of extractable petroleum hydrocarbons biodegradation waste as the main material for making solid fuels

NASA Astrophysics Data System (ADS)

Hendrianie, Nuniek; Juliastuti, Sri Rachmania; Ar-rosyidah, Fanny Husna; Rochman, Hilal Abdur

2017-05-01

Nowadays the existence of energy sources of oil and was limited. Therefore, it was important to searching for new innovations of renewable energy sources by utilizing the waste into a source of energy. On the other hand, the process of extractable petroleum hydrocarbons biodegradation generated sludge that had calorific value and untapped. Because of the need for alternative sources of energy innovation with the concept of zero waste and the fuel potential from extractable petroleum hydrocarbons biodegradation waste, so it was necessary to study the use of extractable petroleum hydrocarbons biodegradation waste as the main material for making solid fuel. In addition, sawdust is a waste that had a great quantities and also had a high calorific value to be mixed with extractable petroleum hydrocarbons biodegradation waste. The purpose of this study was to determine the characteristics of the extractable petroleum hydrocarbons biodegradation waste and to determine the potential and a combination of a mixture of extractable petroleum hydrocarbons biodegradation waste and sawdust which has the best calorific value. The variables of this study was the composition of the waste and sawdust as follows 1:1; 1:3; and 3:1 (mass of sawdust : mass of waste) and time of sawdust carbonization was 10, 15 and 20 minutes. Sawdust was carbonized to get the high heating value. The characteristic of main material and fuel analysis performed with proximate analysis. While the calorific value analysis was performed with a bomb calorimeter. From the research, it was known that extractable petroleum hydrocarbons biodegradation waste had a moisture content of 3.06%; volatile matter 19.98%; ash content of 0.56%; fixed carbon content of 76.4% and a calorific value of 717 cal/gram. And a mixture that had the highest calorific value (4286.5 cal/gram) achieved in comparison sawdust : waste (3:1) by carbonization of sawdust for 20 minutes.

Catabolite regulation analysis of Escherichia coli for acetate overflow mechanism and co-consumption of multiple sugars based on systems biology approach using computer simulation.

PubMed

Matsuoka, Yu; Shimizu, Kazuyuki

2013-10-20

It is quite important to understand the basic principle embedded in the main metabolism for the interpretation of the fermentation data. For this, it may be useful to understand the regulation mechanism based on systems biology approach. In the present study, we considered the perturbation analysis together with computer simulation based on the models which include the effects of global regulators on the pathway activation for the main metabolism of Escherichia coli. Main focus is the acetate overflow metabolism and the co-fermentation of multiple carbon sources. The perturbation analysis was first made to understand the nature of the feed-forward loop formed by the activation of Pyk by FDP (F1,6BP), and the feed-back loop formed by the inhibition of Pfk by PEP in the glycolysis. Those together with the effect of transcription factor Cra caused by FDP level affected the glycolysis activity. The PTS (phosphotransferase system) acts as the feed-back system by repressing the glucose uptake rate for the increase in the glucose uptake rate. It was also shown that the increased PTS flux (or glucose consumption rate) causes PEP/PYR ratio to be decreased, and EIIA-P, Cya, cAMP-Crp decreased, where cAMP-Crp in turn repressed TCA cycle and more acetate is formed. This was further verified by the detailed computer simulation. In the case of multiple carbon sources such as glucose and xylose, it was shown that the sequential utilization of carbon sources was observed for wild type, while the co-consumption of multiple carbon sources with slow consumption rates were observed for the ptsG mutant by computer simulation, and this was verified by experiments. Moreover, the effect of a specific gene knockout such as Δpyk on the metabolic characteristics was also investigated based on the computer simulation. Copyright © 2013 Elsevier B.V. All rights reserved.

Carbonate concretions as a significant component of ancient marine carbon cycles: Insights from paired organic and inorganic carbon isotope analyses of a Cretaceous shale

NASA Astrophysics Data System (ADS)

Loyd, S. J.

2014-12-01

Carbonate concretions often occur within fine-grained, organic-rich sedimentary rocks. This association reflects the common production of diagenetic minerals through biologic cycling of organic matter. Chemical analysis of carbonate concretions provides the rare opportunity to explore ancient shallow diagenetic environments, which are inherently transient due to progressive burial but are an integral component of the marine carbon cycle. The late Cretaceous Holz Shale (~80 Ma) contains abundant calcite concretions that exhibit textural and geochemical characteristics indicative of relatively shallow formation (i.e., near the sediment-water interface). Sampled concretions contain between 5.4 and 9.8 wt.% total inorganic carbon (TIC), or ~45 and 82 wt.% CaCO3, compared to host shale values which average ~1.5 wt.% TIC. Organic carbon isotope compositions (δ13Corg) are relatively constant in host and concretion samples ranging from ­-26.3 to -24.0‰ (VPDB). Carbonate carbon isotope compositions (δ13Ccarb) range from -22.5 to -3.4‰, indicating a significant but not entirely organic source of carbon. Concretions of the lower Holz Shale exhibit considerably elevated δ13Ccarb values averaging -4.8‰, whereas upper Holz Shale concretions express an average δ13Ccarb value of -17.0‰. If the remaining carbonate for lower Holz Shale concretions is sourced from marine fluids and/or dissolved marine carbonate minerals (e.g., shells), a simple mass balance indicates that ~28% of concretion carbon was sourced from organic matter and ~72% from late Cretaceous marine inorganic carbon (with δ13C ~ +2.5‰). Upper Holz Shale calculations indicate a ~73% contribution from organic matter and a ~27% contribution from inorganic carbon. When normalized for carbonate, organic contents within the concretions are ~2-13 wt.% enriched compared to host contents. This potentially reflects the protective nature of cementation that acts to limit permeability and chemical destruction of organic material. These data imply that concretion growth in shallow sediments can act as a significant and long-term sink for both marine inorganic and organic carbon.

Polyphasic characterization of Gluconacetobacter diazotrophicus isolates obtained from different sugarcane varieties

PubMed Central

Guedes, Helma V.; dos Santos, Samuel T.; Perin, Liamara; Teixeira, Kátia R. dos S.; Reis, Veronica M.; Baldani, José I.

2008-01-01

A polyphasic approach was applied to characterize 35 G. diazotrophicus isolates obtained from sugarcane varieties cultivated in Brazil. The isolates were analyzed by phenotypic (use of different carbon sources) and genotypic tests (ARDRA and RISA–RFLP techniques). Variability among the isolates was observed in relation to the carbon source use preference. Glucose and sucrose were used by all isolates in contrast to myo-inositol, galactose and ribose that were not metabolized. The results of the analysis showed the presence of two groups clustered at 68% of similarity. The genetic distance was higher when RISA-RFLP analysis was used. Analysis of 16S rDNA sequences from isolates showed that all of them belonged to the G. diazotrophicus species. Neither effect of the plant part nor sugarcane variety was observed during the cluster analysis. The observed metabolic and genetic variability will be helpful during the strain selection studies for sugarcane inoculation in association with sugarcane breeding programs. PMID:24031296

Sediment source detection by stable isotope analysis, carbon and nitrogen content and CSSI in a small river of the Swiss Plateau

NASA Astrophysics Data System (ADS)

SchindlerWildhaber, Yael; Alewell, Christine; Birkholz, Axel

2014-05-01

Suspended sediment (SS) and organic matter in rivers can harm the fauna by affecting health and fitness of free swimming fish and by causing siltation of the riverbed. The temporal and spatial dynamics of sediment, carbon (C) and nitrogen (N) during the brown trout spawning season in a small river of the Swiss Plateau were assessed and C isotopes as well as the C/N atomic ratio were used to distinguish autochthonous and allochthonous sources of organic matter in SS loads. The visual basic program IsoSource with 13Ctot and 15N as input isotopes was used to quantify the temporal and spatial sources of SS. We determined compound specific stable carbon isotopes (CSSI) in fatty acids of possible sediment source areas to the stream in addition and compared them to SS from selected high flow and low flow events. Organic matter concentrations in the infiltrated and suspended sediment were highest during low flow periods with small sediment loads and lowest during high flow periods with high sediment loads. Peak values in nitrate and dissolved organic C were measured during high flow and high rainfall, probably due to leaching from pasture and arable land. The organic matter was of allochthonous sources as indicated by the C/N atomic ratio and δ13Corg. Organic matter in SS increased from up- to downstream due to an increase in sediment delivery from pasture and arable land downstream of the river. While the major sources of SS are pasture and arable land during base flow conditions, SS from forest soils increased during heavy rain events and warmer winter periods most likely due to snow melt which triggered erosion. Preliminary results of CSSI analysis of sediment source areas and comparison to SS of selected events indicate that differences in d13C values of individual fatty acids are too small to differentiate unambiguously between sediment sources.

Low temperature synthesis and characterization of carbonated hydroxyapatite nanocrystals

NASA Astrophysics Data System (ADS)

Anwar, Aneela; Asghar, Muhammad Nadeem; Kanwal, Qudsia; Kazmi, Mohsin; Sadiqa, Ayesha

2016-08-01

Carbonate substituted hydroxyapatite (CHA) nanorods were synthesized via coprecipitation method from aqueous solution of calcium nitrate tetrahydrate and diammonium hydrogen phosphate (with urea as carbonate ion source) in the presence of ammonium hydroxide solution at 70 °C at the conditions of pH 11. The obtained powders were physically characterized using transmission electron microscopy (TEM), X-ray powder diffraction analysis (XRD), and FTIR and Raman spectroscopy. The particle size was evaluated by Dynamic light scattering (DLS). The chemical structural analysis of as prepared sample was performed using X-ray photoelectron spectroscopy (XPS). After ageing for 12 h, and heat treatment at 1000 °C for 1 h, the product was obtained as highly crystalline nanorods of CHA.

Speciation and Sources of Brown Carbon in Precipitation at Seoul, Korea: Insights from Excitation-Emission Matrix Spectroscopy and Carbon Isotopic Analysis.

PubMed

Yan, Ge; Kim, Guebuem

2017-10-17

Brown carbon (BrC) plays a significant role in the Earth's radiative balance, yet its sources and chemical composition remain poorly understood. In this work, we investigated BrC in the atmospheric environment of Seoul by characterizing dissolved organic matter in precipitation using excitation-emission matrix (EEM) fluorescence spectroscopy coupled with parallel factor analysis (PARAFAC). The two independent fluorescent components identified by PARAFAC were attributed to humic-like substance (HULIS) and biologically derived material based on their significant correlations with measured HULIS isolated using solid-phase extraction and total hydrolyzable tyrosine. The year-long observation shows that HULIS contributes to 66 ± 13% of total fluorescence intensity of our samples on average. By using dual carbon ( 13 C and 14 C) isotopic analysis conducted on isolated HULIS, the HULIS fraction of BrC was found to be primarily derived from biomass burning and emission of terrestrial biogenic gases and particles (>70%), with minor contributions from fossil-fuel combustion. The knowledge derived from this study could contribute to the establishment of a characterizing system of BrC components identified by EEM spectroscopy. Our work demonstrates that, EEM fluorescence spectroscopy is a powerful tool in BrC study, on the basis of its chromophore resolving power, allowing investigation into individual components of BrC by other organic matter characterization techniques.

Proteomic analysis of carbon concentrating chemolithotrophic bacteria Serratia sp. for sequestration of carbon dioxide.

PubMed

Bharti, Randhir K; Srivastava, Shaili; Thakur, Indu Shekhar

2014-01-01

A chemolithotrophic bacterium enriched in the chemostat in presence of sodium bicarbonate as sole carbon source was identified as Serratia sp. by 16S rRNA sequencing. Carbon dioxide sequestering capacity of bacterium was detected by carbonic anhydrase enzyme and ribulose-1, 5- bisphosphate carboxylase/oxygenase (RuBisCO). The purified carbonic anhydrase showed molecular weight of 29 kDa. Molecular weight of RuBisCO was 550 kDa as determined by fast protein liquid chromatography (FPLC), however, sodium dodecyl sulphate polyacrylamide gel electrophoresis (SDS-PAGE) showed presence of two subunits whose molecular weights were 56 and 14 kDa. The Western blot analysis of the crude protein and purified sample cross reacted with RuBisCO large-subunit polypeptides antibodies showed strong band pattern at molecular weight around 56 kDa regions. Whole cell soluble proteins of Serratia sp. grown under autotrophic and heterotrophic conditions were resolved by two-dimensional gel electrophoresis and MALDI-TOF/MS for differential expression of proteins. In proteomic analysis of 63 protein spots, 48 spots were significantly up-regulated in the autotrophically grown cells; seven enzymes showed its utilization in autotrophic carbon fixation pathways and other metabolic activities of bacterium including lipid metabolisms indicated sequestration potency of carbon dioxide and production of biomaterials.

Proteomic Analysis of Carbon Concentrating Chemolithotrophic Bacteria Serratia sp. for Sequestration of Carbon Dioxide

PubMed Central

Bharti, Randhir K.; Srivastava, Shaili; Thakur, Indu Shekhar

2014-01-01

A chemolithotrophic bacterium enriched in the chemostat in presence of sodium bicarbonate as sole carbon source was identified as Serratia sp. by 16S rRNA sequencing. Carbon dioxide sequestering capacity of bacterium was detected by carbonic anhydrase enzyme and ribulose-1, 5- bisphosphate carboxylase/oxygenase (RuBisCO). The purified carbonic anhydrase showed molecular weight of 29 kDa. Molecular weight of RuBisCO was 550 kDa as determined by fast protein liquid chromatography (FPLC), however, sodium dodecyl sulphate polyacrylamide gel electrophoresis (SDS-PAGE) showed presence of two subunits whose molecular weights were 56 and 14 kDa. The Western blot analysis of the crude protein and purified sample cross reacted with RuBisCO large-subunit polypeptides antibodies showed strong band pattern at molecular weight around 56 kDa regions. Whole cell soluble proteins of Serratia sp. grown under autotrophic and heterotrophic conditions were resolved by two-dimensional gel electrophoresis and MALDI-TOF/MS for differential expression of proteins. In proteomic analysis of 63 protein spots, 48 spots were significantly up-regulated in the autotrophically grown cells; seven enzymes showed its utilization in autotrophic carbon fixation pathways and other metabolic activities of bacterium including lipid metabolisms indicated sequestration potency of carbon dioxide and production of biomaterials. PMID:24619032

Carbon Sources Influence Fumonisin Production in Fusarium proliferatum.

PubMed

Li, Taotao; Gong, Liang; Jiang, Guoxiang; Wang, Yong; Gupta, Vijai Kumar; Qu, Hongxia; Duan, Xuewu; Wang, Jiasheng; Jiang, Yueming

2017-10-01

Fusarium proliferatum is a worldwide fungal pathogen that produces fumonisins which are harmful to animal and human health. However, environmental factors affecting fumonisin biosynthesis in F. proliferatum are not well understood. Based on our preliminary results, in this study, we investigated the effect of sucrose or mannose as the sole carbon source on fumonisin B (FB) production by F. proliferatum and studied their underlying mechanisms via proteome and gene expression analysis. Our results showed that mannose, used as the sole carbon source, significantly blocked fumonisin B 1 and B 2 production by F. proliferatum as compared with the use of sucrose. Fifty-seven differentially expressed proteins were successfully identified. The downregulated proteins in the mannose-cultured strain were mainly involved in carbon metabolism, response to stress, and methionine metabolism, as compared with the sucrose-cultured strain. Moreover, quantitative real-time PCR analysis indicated that expression of several key genes involved in FB biosynthetic pathway and in transcription regulation were significantly downregulated in the mannose-cultured F. proliferatum, whereas expression of histone deacetylation-related genes were significantly upregulated. These results suggested that the blockage of FB biosynthesis by mannose was associated with the decreases in conversion of acetyl-CoA to polyketide, methionine biosynthesis, and NADPH regeneration. More importantly, milder oxidative stress, downregulated expression of genes involved in biosynthetic pathway and transcription regulation, and upregulated expression of genes with histone deacetylation possibly were responsible for the blockage of FB biosynthesis in F. proliferatum. © 2017 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Evolvement rules of basin flood risk under low-carbon mode. Part I: response of soil organic carbon to land use change and its influence on land use planning in the Haihe basin.

PubMed

Li, Fawen; Wang, Liping; Zhao, Yong

2017-08-01

Soil organic carbon (SOC) plays an important role in the global carbon cycle. The aim of this study was to evaluate the response of SOC to land use change and its influence on land use planning in the Haihe basin, and provide planning land use pattern for basin flood risk assessment. Firstly, the areas of different land use types in 1980, 2008, and the planning year (2020) were counted by area statistics function of ArcGIS. Then, the transfer matrixes of land use were produced by spatial overlay analysis function. Lastly, based on the land use maps, soil type map and soil profile database, SOC storage of different land use types in three different periods were calculated. The results showed the patterns of land use have changed a lot from 1980 to 2008, among the 19,835 km 2 of grassland was transformed into forestland, which was the largest conversion landscape. And land use conversion brought the SOC storage changes. Total carbon source was 88.83 Tg, and total carbon sink was 85.49 Tg. So, the Haihe basin presented as a carbon source from 1980 to 2008. From 2008 to 2020, the changes of forestland and grassland are the biggest in Haihe basin, which cause the SOC pool change from a carbon source to a carbon sink. SOC storage will increase from 2420.5 Tg in 2008 to 2495.5 Tg in 2020. The changing trend is conducive to reducing atmospheric concentrations. Therefore, land use planning in Haihe basin is reasonable and can provide the underlying surface condition for flood risk assessment.

On the Sources and Sinks of Atmospheric VOCs: An Integrated Analysis of Recent Aircraft Campaigns over North America

NASA Astrophysics Data System (ADS)

Chen, X.; Millet, D. B.; Singh, H. B.; Wisthaler, A.

2017-12-01

We present an integrated analysis of the atmospheric VOC budget over North America using a high-resolution GEOS-Chem simulation and observations from a large suite of recent aircraft campaigns. Here, the standard model simulation is expanded to include a more comprehensive VOC treatment encompassing the best current understanding of emissions and chemistry. Based on this updated framework, we find in the model that biogenic emission dominate VOC carbon sources over North America (accounting for 71% of total primary emissions), and this is especially the case from a reactivity perspective (with biogenic VOCs accounting for 90% of reactivity-weighted emissions). Physical processes and chemical degradation make comparable contributions to the removal of VOC carbon over North America. We further apply this simulation to explore the impacts of different primary VOC sources on atmospheric chemistry in terms of OH reactivity and key atmospheric chemicals including NOx, HCHO, glyoxal, and ozone. The airborne observations show that the majority of detected VOC carbon is carried by oxygenated VOC throughout the North American troposphere, and this tendency is well captured by the model. Model-measurement comparisons along the campaign flight tracks show that the total observed VOC abundance is generally well-predicted by the model within the boundary layer (with some regionally-specific biases) but severely underestimated in the upper troposphere. The observations imply significant missing sources in the model for upper tropospheric methanol, acetone, peroxyacetic acid, and glyoxal, and for organic acids in the lower troposphere. Elemental ratios derived from airborne high-resolution mass spectrometry show only modest change in the ensemble VOC carbon oxidation state with aging (in NOx:NOy space), and the model successfully captures this behavior.

Typhoon impacts on chemical weathering source provenance of a High Standing Island watershed, Taiwan

NASA Astrophysics Data System (ADS)

Meyer, Kevin J.; Carey, Anne E.; You, Chen-Feng

2017-10-01

Chemical weathering source provenance changes associated with Typhoon Mindulle (2004) were identified for the Choshui River Watershed in west-central Taiwan using radiogenic Sr isotope (87Sr/86Sr) and major ion chemistry analysis of water samples collected before, during, and following the storm event. Storm water sampling over 72 h was conducted in 3 h intervals, allowing for novel insight into weathering regime changes in response to intense rainfall events. Chemical weathering sources were determined to be bulk silicate and disseminated carbonate minerals at the surface and silicate contributions from deep thermal waters. Loss on ignition analysis of collected rock samples indicate disseminated carbonate can compose over 25% by weight of surface mineralogy, but typically makes up ∼2-3% of watershed rock. 87Sr/86Sr and major element molar ratios indicate that Typhoon Mindulle caused a weathering regime switch from normal flow incorporating a deep thermal signature to that of a system dominated by surface weathering. The data suggest release of silicate solute rich soil pore waters during storm events, creating a greater relative contribution of silicate weathering to the solute load during periods of increased precipitation and runoff. Partial depletion of this soil solute reservoir and possible erosion enhanced carbonate weathering lead to increased importance of carbonates to the weathering regime as the storm continues. Major ion data indicate that complex mica weathering (muscovite, biotite, illite, chlorite) may represent an important silicate weathering pathway in the watershed. Deep thermal waters represent an important contribution to river solutes during normal non-storm flow conditions. Sulfuric acid sourced from pyrite weathering is likely a major weathering agent in the Choshui River watershed.

Construction and Analysis of High-Ethanol-Producing Fusants with Co-Fermentation Ability through Protoplast Fusion and Double Labeling Technology

PubMed Central

Ge, Jingping; Zhao, Jingwen; Zhang, Luyan; Zhang, Mengyun; Ping, Wenxiang

2014-01-01

Double labeling of resistance markers and report genes can be used to breed engineered Saccharomyces cerevisiae strains that can assimilate xylose and glucose as a mixed carbon source for ethanol fermentation and increased ethanol production. In this study Saccharomyces cerevisiae W5 and Candida shehatae 20335 were used as parent strains to conduct protoplast fusion and the resulting fusants were screened by double labeling. High performance liquid chromatography (HPLC) was used to assess the ethanol yield following the fermentation of xylose and glucose, as both single and mixed carbon sources, by the fusants. Interestingly, one fusant (ZLYRHZ7) was demonstrated to have an excellent fermentation performance, with an ethanol yield using the mixed carbon source of 0.424 g g−1, which compares with 0.240 g g−1 (W5) and 0.353 g g−1 (20335) for the parent strains. This indicates an improvement in the ethanol yield of 43.4% and 16.7%, respectively. PMID:25268957

Dual-ion-beam deposition of carbon films with diamond-like properties

NASA Technical Reports Server (NTRS)

Mirtich, M. J.; Swec, D. M.; Angus, J. C.

1985-01-01

A single and dual ion beam system was used to generate amorphous carbon films with diamond like properties. A methane/argon mixture at a molar ratio of 0.28 was ionized in the low pressure discharge chamber of a 30-cm-diameter ion source. A second ion source, 8 cm in diameter was used to direct a beam of 600 eV Argon ions on the substrates (fused silica or silicon) while the deposition from the 30-cm ion source was taking place. Nuclear reaction and combustion analysis indicate H/C ratios for the films to be 1.00. This high value of H/C, it is felt, allowed the films to have good transmittance. The films were impervious to reagents which dissolve graphitic and polymeric carbon structures. Although the measured density of the films was approximately 1.8 gm/cu cm, a value lower than diamond, the films exhibited other properties that were relatively close to diamond. These films were compared with diamond like films generated by sputtering a graphite target.

Dual ion beam deposition of carbon films with diamondlike properties

NASA Technical Reports Server (NTRS)

Mirtich, M. J.; Swec, D. M.; Angus, J. C.

1984-01-01

A single and dual ion beam system was used to generate amorphous carbon films with diamond like properties. A methane/argon mixture at a molar ratio of 0.28 was ionized in the low pressure discharge chamber of a 30-cm-diameter ion source. A second ion source, 8 cm in diameter was used to direct a beam of 600 eV Argon ions on the substrates (fused silica or silicon) while the deposition from the 30-cm ion source was taking place. Nuclear reaction and combustion analysis indicate H/C ratios for the films to be 1.00. This high value of H/C, it is felt, allowed the films to have good transmittance. The films were impervious to reagents which dissolve graphitic and polymeric carbon structures. Although the measured density of the films was approximately 1.8 gm/cu cm, a value lower than diamond, the films exhibited other properties that were relatively close to diamond. These films were compared with diamondlike films generated by sputtering a graphite target.

Molecular characterization and analysis of the acrB gene of Aspergillus nidulans: a gene identified by genetic interaction as a component of the regulatory network that includes the CreB deubiquitination enzyme.

PubMed Central

Boase, Natasha A; Lockington, Robin A; Adams, Julian R J; Rodbourn, Louise; Kelly, Joan M

2003-01-01

Mutations in the acrB gene, which were originally selected through their resistance to acriflavine, also result in reduced growth on a range of sole carbon sources, including fructose, cellobiose, raffinose, and starch, and reduced utilization of omega-amino acids, including GABA and beta-alanine, as sole carbon and nitrogen sources. The acrB2 mutation suppresses the phenotypic effects of mutations in the creB gene that encodes a regulatory deubiquitinating enzyme, and in the creC gene that encodes a WD40-repeat-containing protein. Thus AcrB interacts with a regulatory network controlling carbon source utilization that involves ubiquitination and deubiquitination. The acrB gene was cloned and physically analyzed, and it encodes a novel protein that contains three putative transmembrane domains and a coiled-coil region. AcrB may play a role in the ubiquitination aspect of this regulatory network. PMID:12750323

Construction and analysis of high-ethanol-producing fusants with co-fermentation ability through protoplast fusion and double labeling technology.

PubMed

Ge, Jingping; Zhao, Jingwen; Zhang, Luyan; Zhang, Mengyun; Ping, Wenxiang

2014-01-01

Double labeling of resistance markers and report genes can be used to breed engineered Saccharomyces cerevisiae strains that can assimilate xylose and glucose as a mixed carbon source for ethanol fermentation and increased ethanol production. In this study Saccharomyces cerevisiae W5 and Candida shehatae 20335 were used as parent strains to conduct protoplast fusion and the resulting fusants were screened by double labeling. High performance liquid chromatography (HPLC) was used to assess the ethanol yield following the fermentation of xylose and glucose, as both single and mixed carbon sources, by the fusants. Interestingly, one fusant (ZLYRHZ7) was demonstrated to have an excellent fermentation performance, with an ethanol yield using the mixed carbon source of 0.424 g g-1, which compares with 0.240 g g-1 (W5) and 0.353 g g-1 (20335) for the parent strains. This indicates an improvement in the ethanol yield of 43.4% and 16.7%, respectively.

Structural and magnetic properties of Fe and carbon nanotubes derived from coconut shells

NASA Astrophysics Data System (ADS)

Qadri, S. B.; Gorzkowski, E. P.; Bussmann, K.; Rath, B. B.; Feng, J.

2018-05-01

Ferric oxide (Fe2O3) was directly reduced to metallic Fe using the carbon source from the coconut shells at temperatures above 1400 °C in argon gas atmospheres. X-ray diffraction analysis showed the presence of α-, γ- phases of Fe in addition to the presence of carbon nanotubes (CNTs). By selecting the appropriate ratios of coconut shell powder to Fe2O3, it is demonstrated that pure Fe is produced without any residual ferric oxide. The quantitative analysis of each of the Fe phases and carbon nanotubes was dependent on the temperature and the duration of processing at high temperature. Transmission electron microcopy results showed copious amount of carbon nanotubes in the samples. Magnetic property measurements suggested that, the average magnetic moment is consistent with presence of α-phase and the ferromagnetic γ-phase of Fe. This novel method of producing pure α- and γ-Fe in the presence of carbon nanotubes using coconut shells has potential applications as nanocomposites.

Atmospheric Observations of Carbon Dioxide and Quantification of Fossil Fuel Carbon Dioxide and Emission Inventories using Radiocarbon in the Korean Peninsula during the KORUS-AQ Field Campaign

NASA Astrophysics Data System (ADS)

Choi, Y.; DiGangi, J. P.; Diskin, G. S.; Nowak, J. B.; Halliday, H.; Pusede, S.; Arellano, A. F., Jr.; Tang, W.; Knote, C. J.; Woo, J. H.; Lee, Y.; Kim, Y.; Bu, C.; Blake, D. R.; Simpson, I. J.; Blake, N. J.; Xu, X.

2017-12-01

This presentation discusses a unique data set of airborne in situ carbon dioxide (CO2) and carbon monoxide (CO) soundings and radiocarbon measurements to accurately quantify anthropogenic CO2 emissions from the total measured CO2 signal. Precise assessment of fossil fuel (FF) CO2 gives a better understanding of source contributions to emission inventories in the study region. Fast response (1Hz) and high precision (<0.1 ppm) in situ measurements of atmospheric CO2 and other trace gases, including 60 CO2 radiocarbon measurements from flask samples, onboard the NASA DC-8 aircraft during KORUS-AQ (May-June, 2016), were used in combination with an updated emissions inventory named NIER/KU_CREATE (Comprehensive Regional Emissions inventory for Atmospheric Transport Experiment) to gain a better understanding of pollution characteristics in the study region. Fractional FF CO2 contributions were calculated using radiocarbon and in-situ CO2 concentrations. These quantified FF CO/CO2 ratios from the in situ measurements were compared to the updated emissions inventory. Distinctly higher ratios were found in Chinese outflow, relative to those from the Korean Peninsula, and the emission inventory shows higher CO/CO2 ratios than measurements both in the Korea and China regions. This quantified FF CO/CO2 ratio was applied to continuous measurements of in-situ CO and CO2 and used to identify the portion of biogenic CO2 observed during the field campaign (the biospheric contribution to the total CO2 is typically 20-30 % in this regions). This continuous partitioning of biogenic and anthropogenic sources will give a better understanding of diurnal variations of local sources and will be helpful for the evaluation of emission inventories, where mega-city fossil fuel combustion sources mix with biospheric sources. Also discussed is the comparison of quantified FF CO/CO2 ratios with the CAMS (Copernicus Atmosphere Monitoring Service) simulated products ratios and local source contribution analysis using FLEXPART-WRF back-trajectory analysis to understand the source of variability of FF CO/CO2 ratios in the study regions.

Carbon stocks and carbon fluxes from a 10 year prescribed burning chronosequence on a UK blanket peat.

NASA Astrophysics Data System (ADS)

Clay, G. D.; Worrall, F.

2012-04-01

Prescribed burning is a common land management technique in many areas of the UK uplands. However, concern has been expressed at the impact of this management practice on carbon stocks and fluxes found in the carbon rich peat soils that underlie many of these areas. Existing data shows a range of results at differing spatial and temporal scales for a range of carbon pathways e.g. dissolved organic carbon (DOC), yet there are limited studies that monitor a suite of parameters under burning management. This study measured both carbon stocks and carbon fluxes from a chronosequence of prescribed burn sites in northern England. A range of carbon parameters were measured including: above-ground biomass and carbon stocks; net ecosystem exchange (NEE); ecosystem respiration (Reco); photosynthesis (Pg); and particulate organic carbon (POC). CO2 data was analysed using ANOVA to investigate any significant differences between burn years. Carbon budgets were also calculated using measured and modelled data. Analysis of the CO2 data showed that burning was a significant factor in measured CO2 readings but that other factors such as month of sampling explained a greater proportion of the variation in the data. Carbon budget results show that whilst all the sites were net sources of carbon, the most recent burns were smaller sources of carbon compared to the older burns (Burn year 2009: 85 ± 29 gC/m2/yr; Burn year 1999: 152 ± 12 gC/m2/yr). Additionally, the most recent burns were net sinks of gaseous CO2.

Life-cycle analysis of alternative aviation fuels in GREET

DOE Office of Scientific and Technical Information (OSTI.GOV)

Elgowainy, A.; Han, J.; Wang, M.

2012-07-23

The Greenhouse gases, Regulated Emissions, and Energy use in Transportation (GREET) model, developed at Argonne National Laboratory, has been expanded to include well-to-wake (WTWa) analysis of aviation fuels and aircraft. This report documents the key WTWa stages and assumptions for fuels that represent alternatives to petroleum jet fuel. The aviation module in GREET consists of three spreadsheets that present detailed characterizations of well-to-pump and pump-to-wake parameters and WTWa results. By using the expanded GREET version (GREET1{_}2011), we estimate WTWa results for energy use (total, fossil, and petroleum energy) and greenhouse gas (GHG) emissions (carbon dioxide, methane, and nitrous oxide) formore » (1) each unit of energy (lower heating value) consumed by the aircraft or (2) each unit of distance traveled/ payload carried by the aircraft. The fuel pathways considered in this analysis include petroleum-based jet fuel from conventional and unconventional sources (i.e., oil sands); Fisher-Tropsch (FT) jet fuel from natural gas, coal, and biomass; bio-jet fuel from fast pyrolysis of cellulosic biomass; and bio-jet fuel from vegetable and algal oils, which falls under the American Society for Testing and Materials category of hydroprocessed esters and fatty acids. For aircraft operation, we considered six passenger aircraft classes and four freight aircraft classes in this analysis. Our analysis revealed that, depending on the feedstock source, the fuel conversion technology, and the allocation or displacement credit methodology applied to co-products, alternative bio-jet fuel pathways have the potential to reduce life-cycle GHG emissions by 55-85 percent compared with conventional (petroleum-based) jet fuel. Although producing FT jet fuel from fossil feedstock sources - such as natural gas and coal - could greatly reduce dependence on crude oil, production from such sources (especially coal) produces greater WTWa GHG emissions compared with petroleum jet fuel production unless carbon management practices, such as carbon capture and storage, are used.« less

Life-Cycle Analysis of Alternative Aviation Fuels in GREET

DOE Office of Scientific and Technical Information (OSTI.GOV)

Elgowainy, A.; Han, J.; Wang, M.

2012-06-01

The Greenhouse gases, Regulated Emissions, and Energy use in Transportation (GREET) model, developed at Argonne National Laboratory, has been expanded to include well-to-wake (WTWa) analysis of aviation fuels and aircraft. This report documents the key WTWa stages and assumptions for fuels that represent alternatives to petroleum jet fuel. The aviation module in GREET consists of three spreadsheets that present detailed characterizations of well-to-pump and pump-to-wake parameters and WTWa results. By using the expanded GREET version (GREET1_2011), we estimate WTWa results for energy use (total, fossil, and petroleum energy) and greenhouse gas (GHG) emissions (carbon dioxide, methane, and nitrous oxide) formore » (1) each unit of energy (lower heating value) consumed by the aircraft or(2) each unit of distance traveled/ payload carried by the aircraft. The fuel pathways considered in this analysis include petroleum-based jet fuel from conventional and unconventional sources (i.e., oil sands); Fisher-Tropsch (FT) jet fuel from natural gas, coal, and biomass; bio-jet fuel from fast pyrolysis of cellulosic biomass; and bio-jet fuel from vegetable and algal oils, which falls under the American Society for Testing and Materials category of hydroprocessed esters and fatty acids. For aircraft operation, we considered six passenger aircraft classes and four freight aircraft classes in this analysis. Our analysis revealed that, depending on the feedstock source, the fuel conversion technology, and the allocation or displacement credit methodology applied to co-products, alternative bio-jet fuel pathways have the potential to reduce life-cycle GHG emissions by 55–85 percent compared with conventional (petroleum-based) jet fuel. Although producing FT jet fuel from fossil feedstock sources — such as natural gas and coal — could greatly reduce dependence on crude oil, production from such sources (especially coal) produces greater WTWa GHG emissions compared with petroleum jet fuel production unless carbon management practices, such as carbon capture and storage, are used.« less

Carbonate apron models: Alternatives to the submarine fan model for paleoenvironmental analysis and hydrocarbon exploration

USGS Publications Warehouse

Mullins, H.T.; Cook, H.E.

1986-01-01

Sediment gravity flow deposition along the deep-water flanks of carbonate platforms typically does not produce submarine fans. Rather, wedge-shaped carbonate aprons develop parallel to the adjacent shelf/slope break. The major difference between submarine fans and carbonate aprons is a point source with channelized sedimentation on fans, versus a line source with sheet-flow sedimentation on aprons. Two types of carbonate aprons may develop. Along relatively gentle (< 4??) platform-margin slopes, aprons form immediately adjacent to the shallow-water platform and are referred to as carbonate slope aprons. Along relatively steep (4-15??) platform margin slopes, redeposited limestones accumulate in a base-of-slope setting, by-passing an upper slope via a multitude of small submarine canyons, and are referred to as carbonate base-of-slope aprons. Both apron types are further subdivided into inner and outer facies belts. Inner apron sediments consist of thick, mud-supported conglomerates and megabreccias (Facies F) as well as thick, coarse-grained turbidites (Facies A) interbedded with subordinate amounts of fine-grained, peri-platform ooze (Facies G). Outer apron sediments consist of thinner, grain-supported conglomerates and turbidites (Facies A) as well as classical turbidites (Facies C) with recognizable Bouma divisions, interbedded with approximately equal proportions of peri-platform ooze (Facies G). Seaward, aprons grade laterally into basinal facies of thin, base-cut-out carbonate turbidites (Facies D) that are subordinate to peri-platform oozes (Facies G). Carbonate base-of-slope aprons grade shelfward into an upper slope facies of fine-grained peri-platform ooze (Facies G) cut by numerous small canyons that are filled with coarse debris, as well as intraformational truncation surfaces which result from submarine sliding. In contrast, slope aprons grade shelfward immediately into shoal-water, platform-margin facies without an intervening by-pass slope. The two carbonate apron models presented here offer alternatives to the submarine-fan model for paleoenvironmental analysis and hydrocarbon exploration for mass-transported carbonate facies. ?? 1986.

Identifying Aerosol Type/Mixture from Aerosol Absorption Properties Using AERONET

NASA Technical Reports Server (NTRS)

Giles, D. M.; Holben, B. N.; Eck, T. F.; Sinyuk, A.; Dickerson, R. R.; Thompson, A. M.; Slutsker, I.; Li, Z.; Tripathi, S. N.; Singh, R. P.;

Evaluating the climate benefits of CO2-enhanced oil recovery using life cycle analysis.

PubMed

Cooney, Gregory; Littlefield, James; Marriott, Joe; Skone, Timothy J

2015-06-16

This study uses life cycle analysis (LCA) to evaluate the greenhouse gas (GHG) performance of carbon dioxide (CO2) enhanced oil recovery (EOR) systems. A detailed gate-to-gate LCA model of EOR was developed and incorporated into a cradle-to-grave boundary with a functional unit of 1 MJ of combusted gasoline. The cradle-to-grave model includes two sources of CO2: natural domes and anthropogenic (fossil power equipped with carbon capture). A critical parameter is the crude recovery ratio, which describes how much crude is recovered for a fixed amount of purchased CO2. When CO2 is sourced from a natural dome, increasing the crude recovery ratio decreases emissions, the opposite is true for anthropogenic CO2. When the CO2 is sourced from a power plant, the electricity coproduct is assumed to displace existing power. With anthropogenic CO2, increasing the crude recovery ratio reduces the amount of CO2 required, thereby reducing the amount of power displaced and the corresponding credit. Only the anthropogenic EOR cases result in emissions lower than conventionally produced crude. This is not specific to EOR, rather the fact that carbon-intensive electricity is being displaced with captured electricity, and the fuel produced from that system receives a credit for this displacement.

Properties of black carbon and other insoluble light-absorbing particles in seasonal snow of northwestern China

NASA Astrophysics Data System (ADS)

Pu, Wei; Wang, Xin; Wei, Hailun; Zhou, Yue; Shi, Jinsen; Hu, Zhiyuan; Jin, Hongchun; Chen, Quanliang

2017-05-01

A large field campaign was conducted and 284 snow samples were collected at 38 sites in Xinjiang Province and 6 sites in Qinghai Province across northwestern China from January to February 2012. A spectrophotometer combined with chemical analysis was used to measure the insoluble light-absorbing particles (ILAPs) and chemical components in seasonal snow. The results indicate that the cleanest snow was found in northeastern Xinjiang along the border of China, and it presented an estimated black carbon (CBCest) of approximately 5 ng g-1. The dirtiest snow presented a CBCest of approximately 450 ng g-1 near industrial cities in Xinjiang. Overall, the CBCest of most of the snow samples collected in this campaign was in the range of 10-150 ng g-1. Vertical variations in the snowpack ILAPs indicated a probable shift in emission sources with the progression of winter. An analysis of the fractional contributions to absorption implied that organic carbon (OC) dominated the 450 nm absorption in Qinghai, while the contributions from BC and OC were comparable in Xinjiang. Finally, a positive matrix factorization (PMF) model was run to explore the sources of particulate light absorption, and the results indicated an optimal three-factor/source solution that included industrial pollution, biomass burning, and soil dust.

Spectroscopic quantification of extremely rare molecular species in the presence of interfering optical absorption

DOEpatents

Ognibene, Ted; Bench, Graham; McCartt, Alan Daniel; Turteltaub, Kenneth; Rella, Chris W.; Tan, Sze; Hoffnagle, John A.; Crosson, Eric

2017-05-09

Optical spectrometer apparatus, systems, and methods for analysis of carbon-14 including a resonant optical cavity configured to accept a sample gas including carbon-14, an optical source configured to deliver optical radiation to the resonant optical cavity, an optical detector configured to detect optical radiation emitted from the resonant cavity and to provide a detector signal; and a processor configured to compute a carbon-14 concentration from the detector signal, wherein computing the carbon-14 concentration from the detector signal includes fitting a spectroscopic model to a measured spectrogram, wherein the spectroscopic model accounts for contributions from one or more interfering species that spectroscopically interfere with carbon-14.

Forensic analysis of explosives using isotope ratio mass spectrometry (IRMS)--preliminary study on TATP and PETN.

PubMed

Benson, Sarah J; Lennard, Christopher J; Maynard, Philip; Hill, David M; Andrew, Anita S; Roux, Claude

2009-06-01

The application of isotopic techniques to investigations requiring the provision of evidence to a Court is limited. The objective of this research was to investigate the application of light stable isotopes and isotope ratio mass spectrometry (IRMS) to solve complex forensic cases by providing a level of discrimination not achievable utilising traditional forensic techniques. Due to the current threat of organic peroxide explosives, such as triacetone triperoxide (TATP), research was undertaken to determine the potential of IRMS to differentiate samples of TATP that had been manufactured utilising different starting materials and/or manufacturing processes. In addition, due to the prevalence of pentaerythritoltetranitrate (PETN) in detonators, detonating cord, and boosters, the potential of the IRMS technique to differentiate PETN samples from different sources was also investigated. Carbon isotope values were measured in fourteen TATP samples, with three definite groups appearing in the initial sample set based on the carbon data alone. Four additional TATP samples (in a second set of samples) were distinguishable utilising the carbon and hydrogen isotopic compositions individually, and also in combination with the oxygen isotope values. The 3D plot of the carbon, oxygen and hydrogen data demonstrated the clear discrimination of the four samples of TATP. The carbon and nitrogen isotope values measured from fifteen PETN samples, allowed samples from different sources to be readily discriminated. This paper demonstrates the successful application of IRMS to the analysis of explosives of forensic interest to assist in discriminating samples from different sources. This research represents a preliminary evaluation of the IRMS technique for the measurement of stable isotope values in TATP and PETN samples, and supports the dedication of resources for a full evaluation of this application in order to achieve Court reportable IRMS results.

Dry season limnological conditions and basin geology exhibit complex relationships with δ13C and δ15N of carbon sources in four Neotropical floodplains.

PubMed

Zaia Alves, Gustavo H; Hoeinghaus, David J; Manetta, Gislaine I; Benedito, Evanilde

2017-01-01

Studies in freshwater ecosystems are seeking to improve understanding of carbon flow in food webs and stable isotopes have been influential in this work. However, variation in isotopic values of basal production sources could either be an asset or a hindrance depending on study objectives. We assessed the potential for basin geology and local limnological conditions to predict stable carbon and nitrogen isotope values of six carbon sources at multiple locations in four Neotropical floodplain ecosystems (Paraná, Pantanal, Araguaia, and Amazon). Limnological conditions exhibited greater variation within than among systems. δ15N differed among basins for most carbon sources, but δ13C did not (though high within-basin variability for periphyton, phytoplankton and particulate organic carbon was observed). Although δ13C and δ15N values exhibited significant correlations with some limnological factors within and among basins, those relationships differed among carbon sources. Regression trees for both carbon and nitrogen isotopes for all sources depicted complex and in some cases nested relationships, and only very limited similarity was observed among trees for different carbon sources. Although limnological conditions predicted variation in isotope values of carbon sources, we suggest the resulting models were too complex to enable mathematical corrections of source isotope values among sites based on these parameters. The importance of local conditions in determining variation in source isotope values suggest that isotopes may be useful for examining habitat use, dispersal and patch dynamics within heterogeneous floodplain ecosystems, but spatial variability in isotope values needs to be explicitly considered when testing ecosystem models of carbon flow in these systems.

Dry season limnological conditions and basin geology exhibit complex relationships with δ13C and δ15N of carbon sources in four Neotropical floodplains

PubMed Central

Hoeinghaus, David J.; Manetta, Gislaine I.; Benedito, Evanilde

2017-01-01

Studies in freshwater ecosystems are seeking to improve understanding of carbon flow in food webs and stable isotopes have been influential in this work. However, variation in isotopic values of basal production sources could either be an asset or a hindrance depending on study objectives. We assessed the potential for basin geology and local limnological conditions to predict stable carbon and nitrogen isotope values of six carbon sources at multiple locations in four Neotropical floodplain ecosystems (Paraná, Pantanal, Araguaia, and Amazon). Limnological conditions exhibited greater variation within than among systems. δ15N differed among basins for most carbon sources, but δ13C did not (though high within-basin variability for periphyton, phytoplankton and particulate organic carbon was observed). Although δ13C and δ15N values exhibited significant correlations with some limnological factors within and among basins, those relationships differed among carbon sources. Regression trees for both carbon and nitrogen isotopes for all sources depicted complex and in some cases nested relationships, and only very limited similarity was observed among trees for different carbon sources. Although limnological conditions predicted variation in isotope values of carbon sources, we suggest the resulting models were too complex to enable mathematical corrections of source isotope values among sites based on these parameters. The importance of local conditions in determining variation in source isotope values suggest that isotopes may be useful for examining habitat use, dispersal and patch dynamics within heterogeneous floodplain ecosystems, but spatial variability in isotope values needs to be explicitly considered when testing ecosystem models of carbon flow in these systems. PMID:28358822

Assessing the environmental impact of energy production from hydrochar generated via hydrothermal carbonization of food wastes.

PubMed

Berge, Nicole D; Li, Liang; Flora, Joseph R V; Ro, Kyoung S

2015-09-01

Although there are numerous studies suggesting hydrothermal carbonization is an environmentally advantageous process for transformation of wastes to value-added products, a systems level evaluation of the environmental impacts associated with hydrothermal carbonization and subsequent hydrochar combustion has not been conducted. The specific objectives of this work are to use a life cycle assessment approach to evaluate the environmental impacts associated with the HTC of food wastes and the subsequent combustion of the generated solid product (hydrochar) for energy production, and to understand how parameters and/or components associated with food waste carbonization and subsequent hydrochar combustion influence system environmental impact. Results from this analysis indicate that HTC process water emissions and hydrochar combustion most significantly influence system environmental impact, with a net negative GWP impact resulting for all evaluated substituted energy-sources except biomass. These results illustrate the importance of electricity production from hydrochar particularly when it is used to offset coal-based energy sources. HTC process water emissions result in a net impact to the environment, indicating a need for developing appropriate management strategies. Results from this analysis also highlight a need for additional exploration of liquid and gas-phase composition, a better understanding of how changes in carbonization conditions (e.g., reaction time and temperature) influence metal and nutrient fate, and the exploration of liquid-phase treatment. Copyright © 2015 Elsevier Ltd. All rights reserved.

Black carbon, mass and elemental measurements of airborne particles in the village of Serowe, Botswana

NASA Astrophysics Data System (ADS)

Moloi, K.; Chimidza, S.; Lindgren, E. Selin; Viksna, A.; Standzenieks, P.

Absorption of sunlight by sub-micron particles is an important factor in calculations of the radiation balance of the earth and thus in climate modelling. Carbon-containing particles are generally considered as the most important in this respect. Major sources of these particles are generally considered to be bio-mass burning and vehicle exhaust. In order to characterise size fractionated particulate matter in a rural village in Botswana with respect to light absorption and elemental content experiments were performed, in which simultaneous sampling was made with a dichotomous impactor and a laboratory-made sampler, made compatible with black carbon analysis by reflectometry. The dichotomous impactor was equipped with Teflon filters and the other sampler with glass fibre filters. Energy dispersive X-ray fluorescence was used for elemental analysis of both kinds of filters. It appeared that Teflon filters were the most suitable for the combination of mass-, elemental- and black carbon measurements. The black carbon content in coarse (2.5-10 μm) and fine (<2.5 μm) particles was determined separately and related to elemental content and emission source. The results show that the fine particle fraction in the aerosol has a much higher contribution of black particles than the coarse particle fraction. This observation is valid for the village in Botswana as well as for a typical industrialised city in Sweden, used as a reference location.

Characterization of a Carbon Nanotube Field Emission Electron Gun for the VAPoR Miniaturized Pyrolysis-Time-of-Flight Mass Spectrometer

NASA Technical Reports Server (NTRS)

Getty, Stephanie; Li, Mary; Costen, Nicholas; Hess, Larry; Feng, Steve; King, Todd; Brinckerhoff, William; Mahaffy, Paul; Glavin, Daniel

2009-01-01

We are developing the VAPoR (Volatile Analysis by Pyrolysis of Regolith) instrument towards studying soil composition, volatiles, and trapped noble gases in the polar regions of the Moon. VAPOR will ingest a soil sample and conduct analysis by pyrolysis and time-of-flight mass spectrometry (ToF-MS). Here, we describe miniaturization efforts within this development, including a carbon nanotube (CNT) field emission electron gun that is under consideration for use as the electron impact ionization source for the ToF-MS.

Increase in observed net carbon dioxide uptake by land and oceans during the past 50 years.

PubMed

Ballantyne, A P; Alden, C B; Miller, J B; Tans, P P; White, J W C

2012-08-02

One of the greatest sources of uncertainty for future climate predictions is the response of the global carbon cycle to climate change. Although approximately one-half of total CO(2) emissions is at present taken up by combined land and ocean carbon reservoirs, models predict a decline in future carbon uptake by these reservoirs, resulting in a positive carbon-climate feedback. Several recent studies suggest that rates of carbon uptake by the land and ocean have remained constant or declined in recent decades. Other work, however, has called into question the reported decline. Here we use global-scale atmospheric CO(2) measurements, CO(2) emission inventories and their full range of uncertainties to calculate changes in global CO(2) sources and sinks during the past 50 years. Our mass balance analysis shows that net global carbon uptake has increased significantly by about 0.05 billion tonnes of carbon per year and that global carbon uptake doubled, from 2.4 ± 0.8 to 5.0 ± 0.9 billion tonnes per year, between 1960 and 2010. Therefore, it is very unlikely that both land and ocean carbon sinks have decreased on a global scale. Since 1959, approximately 350 billion tonnes of carbon have been emitted by humans to the atmosphere, of which about 55 per cent has moved into the land and oceans. Thus, identifying the mechanisms and locations responsible for increasing global carbon uptake remains a critical challenge in constraining the modern global carbon budget and predicting future carbon-climate interactions.

Utilization of carbon sources in a northern Brazilian mangrove ecosystem

NASA Astrophysics Data System (ADS)

Giarrizzo, Tommaso; Schwamborn, Ralf; Saint-Paul, Ulrich

2011-12-01

Carbon and nitrogen stable isotope ratios ( 13C and 15N) and trophic level (TL) estimates based on stomach content analysis and published data were used to assess the contribution of autotrophic sources to 55 consumers in an intertidal mangrove creek of the Curuçá estuary, northern Brazil. Primary producers showed δ 13C signatures ranging between -29.2 and -19.5‰ and δ 15N from 3.0 to 6.3‰. The wide range of the isotopic composition of carbon of consumers (-28.6 to -17.1‰) indicated that different autotrophic sources are important in the intertidal mangrove food webs. Food web segregation structures the ecosystem into three relatively distinct food webs: (i) mangrove food web, where vascular plants contribute directly or indirectly via POM to the most 13C-depleted consumers (e.g. Ucides cordatus and zooplanktivorous food chains); (ii) algal food web, where benthic algae are eaten directly by consumers (e.g. Uca maracoani, mullets, polychaetes, several fishes); (iii) mixed food web where the consumers use the carbon from different primary sources (mainly benthivorous fishes). An IsoError mixing model was used to determine the contributions of primary sources to consumers, based on δ 13C values. Model outputs were very sensitive to the magnitude of trophic isotope fractionation and to the variability in 13C data. Nevertheless, the simplification of the system by a priori aggregation of primary producers allowed interpretable results for several taxa, revealing the segregation into different food webs.

Proteomic and metabolomic analysis of the carotenogenic yeast Xanthophyllomyces dendrorhous using different carbon sources.

PubMed

Martinez-Moya, Pilar; Niehaus, Karsten; Alcaíno, Jennifer; Baeza, Marcelo; Cifuentes, Víctor

2015-04-12

Astaxanthin is a potent antioxidant with increasing biotechnological interest. In Xanthophyllomyces dendrorhous, a natural source of this pigment, carotenogenesis is a complex process regulated through several mechanisms, including the carbon source. X. dendrorhous produces more astaxanthin when grown on a non-fermentable carbon source, while decreased astaxanthin production is observed in the presence of high glucose concentrations. In the present study, we used a comparative proteomic and metabolomic analysis to characterize the yeast response when cultured in minimal medium supplemented with glucose (fermentable) or succinate (non-fermentable). A total of 329 proteins were identified from the proteomic profiles, and most of these proteins were associated with carotenogenesis, lipid and carbohydrate metabolism, and redox and stress responses. The metabolite profiles revealed 92 metabolites primarily associated with glycolysis, the tricarboxylic acid cycle, amino acids, organic acids, sugars and phosphates. We determined the abundance of proteins and metabolites of the central pathways of yeast metabolism and examined the influence of these molecules on carotenogenesis. Similar to previous proteomic-stress response studies, we observed modulation of abundance from several redox, stress response, carbohydrate and lipid enzymes. Additionally, the accumulation of trehalose, absence of key ROS response enzymes, an increased abundance of the metabolites of the pentose phosphate pathway and tricarboxylic acid cycle suggested an association between the accumulation of astaxanthin and oxidative stress in the yeast. Moreover, we observed the increased abundance of late carotenogenesis enzymes during astaxanthin accumulation under succinate growth conditions. The use of succinate as a carbon source in X. dendrorhous cultures increases the availability of acetyl-CoA for the astaxanthin production compared with glucose, likely reflecting the positive regulation of metabolic enzymes of the tricarboxylic acid and glyoxylate cycles. The high metabolite level generated in this pathway could increase the cellular respiration rate, producing reactive oxygen species, which induces carotenogenesis.

Differences in carbon source utilization of Salmonella Oranienburg and Saintpaul isolated from river water.

PubMed

Medrano-Félix, Andrés; Estrada-Acosta, Mitzi; Peraza-Garay, Felipe; Castro-Del Campo, Nohelia; Martínez-Urtaza, Jaime; Chaidez, Cristóbal

2017-08-01

Long-term exposure to river water by non-indigenous micro-organisms such as Salmonella may affect metabolic adaptation to carbon sources. This study was conducted to determine differences in carbon source utilization of Salmonella Oranienburg and Salmonella Saintpaul (isolated from tropical river water) as well as the control strain Salmonella Typhimurium exposed to laboratory, river water, and host cells (Hep-2 cell line) growth conditions. Results showed that Salmonella Oranienburg and Salmonella Saintpaul showed better ability for carbon source utilization under the three growth conditions evaluated; however, S. Oranienburg showed the fastest and highest utilization on different carbon sources, including D-Glucosaminic acid, N-acetyl-D-Glucosamine, Glucose-1-phosphate, and D-Galactonic acid, while Salmonella Saintpaul and S. Typhimurium showed a limited utilization of carbon sources. In conclusion, this study suggests that environmental Salmonella strains show better survival and preconditioning abilities to external environments than the control strain based on their plasticity on diverse carbon sources use.

Homologous functional expression of cryptic phaG from Pseudomonas oleovorans establishes the transacylase-mediated polyhydroxyalkanoate biosynthetic pathway.

PubMed

Hoffmann, N; Steinbüchel, A; Rehm, B H

2000-11-01

Various pseudomonads are capable of the synthesis of polyhydroxyalkanoate (PHA), composed of medium chain length (MCL) 3-hydroxy fatty acids (C6-C14), when grown on simple carbon sources such as, for example, gluconate or acetate. In Pseudomonas putida, the fatty acid de novo synthesis and PHA synthesis are linked by the transacylase PhaG. Southern hybridization experiments with digoxigenin-labeled phaG(Pp) from P. putida and genomic DNA from various pseudomonads indicate that phaG homologues are present in various other pseudomonads. Although P. oleovorans does not accumulate PHA(MCL) from non-related carbon sources, its genomic DNA reveals a strong hybridization signal. We employed PCR to amplify this phaG homologue. The respective PCR product comprising the coding region of phaG(Po) was cloned into pBBR1MCS-2, resulting in plasmid pBHR84. DNA sequencing revealed that putative PhaG(Po) from P. oleovorans exhibited about 95% amino acid sequence identity to PhaG(Pp) from P. putida. Reverse transcriptase-PCR analysis demonstrated that phaG(Po) was not transcribed even tinder inducing conditions, i.e. in the presence of gluconate as carbon source, whereas induction of phaG(Pp) transcription was obtained in P. putida. When octanoate was used as sole carbon source, only low levels of phaG mRNA were detected in P. putida. Plasmid pBHR84 complemented the phaG-negative mutant PhaG(N)-21 from P. putida. Interestingly, reintroduction of phaG(Po) under lac promoter control into the natural host P. oleovorans established PHA(MCL) synthesis from non-related carbon sources in this bacterium. These data indicated that phaG(Po) in P. oleovorans is not functionally expressed and does not exert its original function.

Carbon isotope analyses of n-alkanes released from rapid pyrolysis of oil asphaltenes in a closed system.

PubMed

Chen, Shasha; Jia, Wanglu; Peng, Ping'an

2016-08-15

Carbon isotope analysis of n-alkanes produced by the pyrolysis of oil asphaltenes is a useful tool for characterizing and correlating oil sources. Low-temperature (320-350°C) pyrolysis lasting 2-3 days is usually employed in such studies. Establishing a rapid pyrolysis method is necessary to reduce the time taken for the pretreatment process in isotope analyses. One asphaltene sample was pyrolyzed in sealed ampoules for different durations (60-120 s) at 610°C. The δ(13) C values of the pyrolysates were determined by gas chromatography/combustion/isotope ratio mass spectrometry (GC/C/IRMS). The molecular characteristics and isotopic signatures of the pyrolysates were investigated for the different pyrolysis durations and compared with results obtained using the normal pyrolysis method, to determine the optimum time interval. Several asphaltene samples derived from various sources were analyzed using this method. The asphaltene pyrolysates of each sample were similar to those obtained by the flash pyrolysis method on similar samples. However, the molecular characteristics of the pyrolysates obtained over durations longer than 90 s showed intensified secondary reactions. The carbon isotopic signatures of individual compounds obtained at pyrolysis durations less than 90 s were consistent with those obtained from typical low-temperature pyrolysis. Several asphaltene samples from various sources released n-alkanes with distinct carbon isotopic signatures. This easy-to-use pyrolysis method, combined with a subsequent purification procedure, can be used to rapidly obtain clean n-alkanes from oil asphaltenes. Carbon isotopic signatures of n-alkanes released from oil asphaltenes from different sources demonstrate the potential application of this method in 'oil-oil' and 'oil-source' correlations. Copyright © 2016 John Wiley & Sons, Ltd. Copyright © 2016 John Wiley & Sons, Ltd.

Chemical characteristics and source apportionment of indoor and outdoor fine particles observed in an urban environment in Korea

NASA Astrophysics Data System (ADS)

Heo, J.; Yi, S. M.

2016-12-01

Paired indoor-outdoor fine particulate matter (PM2.5) samples were collected at subway stations, underground shopping centers, and schools in Seoul metropolitan over a 4-year period between 2004 and 2007. Relationships between indoor and outdoor PM2.5 chemical species were determined and source contributions to indoor and outdoor PM2.5 mass were estimated using a positive matrix factorization (PMF) model. The PM2.5 samples were analyzed for major chemical components including organic carbon and elemental carbon, ions, and metals, and the results were used in the PMF model. The levels of the PM2.5 mass and its chemical components observed at the indoor sites were higher than those at the outdoor sites. Indoor levels of ions (i.e. sulfate, nitrate, ammonium), elemental carbon, and several metals (i.e. Fe, Zn, and Cu) were found to be significantly affected by outdoor sources. Very high indoor-to-outdoor mass ratio of these chemical components, in particular, were observed, representing the significant impacts of outdoor sources on indoor levels of them. Seven sources (secondary sulfate, secondary nitrate, mobile, biomass burning, roadway emissions, dust, and sea salt) were resolved by the PMF model at both of the indoor and outdoor sites. The secondary inorganic aerosol (i.e. secondary sulfate and nitrate) and the mobile sources were major contributors to the indoor and outdoor PM2.5, accounting for 47% and 27% of the outdoor PM2.5 and 40% and 25% of the indoor PM2.5, respectively. Furthermore, the contributions of the secondary inorganic aerosol and the mobile sources to the indoor PM2.5 were very comparable to its corresponding contributions to the outdoor PM2.5 levels. The spatial and temporal characteristics of each of sources resolved by the PMF model across the sites were examined using summary statistics, correlation analysis, and coefficient of variation and divergence analysis and the detailed results will be discussed in the presentation.

Emissions & Measurements - Black Carbon

EPA Science Inventory

Emissions and Measurement (EM) research activities performed within the National Risk Management Research Lab NRMRL) of EPA's Office of Research and Development (ORD) support measurement and laboratory analysis approaches to accurately characterize source emissions, and near sour...

Quality assurance and quality control for thermal/optical analysis of aerosol samples for organic and elemental carbon.

PubMed

Chow, Judith C; Watson, John G; Robles, Jerome; Wang, Xiaoliang; Chen, L-W Antony; Trimble, Dana L; Kohl, Steven D; Tropp, Richard J; Fung, Kochy K

2011-12-01

Accurate, precise, and valid organic and elemental carbon (OC and EC, respectively) measurements require more effort than the routine analysis of ambient aerosol and source samples. This paper documents the quality assurance (QA) and quality control (QC) procedures that should be implemented to ensure consistency of OC and EC measurements. Prior to field sampling, the appropriate filter substrate must be selected and tested for sampling effectiveness. Unexposed filters are pre-fired to remove contaminants and acceptance tested. After sampling, filters must be stored in the laboratory in clean, labeled containers under refrigeration (<4 °C) to minimize loss of semi-volatile OC. QA activities include participation in laboratory accreditation programs, external system audits, and interlaboratory comparisons. For thermal/optical carbon analyses, periodic QC tests include calibration of the flame ionization detector with different types of carbon standards, thermogram inspection, replicate analyses, quantification of trace oxygen concentrations (<100 ppmv) in the helium atmosphere, and calibration of the sample temperature sensor. These established QA/QC procedures are applicable to aerosol sampling and analysis for carbon and other chemical components.

[Effects of long-term fertilization on microbial biomass carbon and nitrogen and on carbon source utilization of microbes in a red soil].

PubMed

Sun, Feng-xia; Zhang, Wei-hua; Xu, Ming-gang; Zhang, Wen-ju; Li, Zhao-qiang; Zhang, Jing-ye

2010-11-01

In order to explore the effects of long-term fertilization on the microbiological characters of red soil, soil samples were collected from a 19-year long-term experimental field in Qiyang of Hunan, with their microbial biomass carbon (MBC) and nitrogen (MBN) and microbial utilization ratio of carbon sources analyzed. The results showed that after 19-year fertilization, the soil MBC and MBN under the application of organic manure and of organic manure plus inorganic fertilizers were 231 and 81 mg x kg(-1) soil, and 148 and 73 mg x kg(-1) soil, respectively, being significantly higher than those under non-fertilization, inorganic fertilization, and inorganic fertilization plus straw incorporation. The ratio of soil MBN to total N under the application of organic manure and of organic manure plus inorganic fertilizers was averagely 6.0%, significantly higher than that under non-fertilization and inorganic fertilization. Biolog-ECO analysis showed that the average well color development (AWCD) value was in the order of applying organic manure plus inorganic fertilizers = applying organic manure > non-fertilization > inorganic fertilization = inorganic fertilization plus straw incorporation. Under the application of organic manure or of organic manure plus inorganic fertilizers, the microbial utilization rate of carbon sources, including carbohydrates, carboxylic acids, amino acids, polymers, phenols, and amines increased; while under inorganic fertilization plus straw incorporation, the utilization rate of polymers was the highest, and that of carbohydrates was the lowest. Our results suggested that long-term application of organic manure could increase the red soil MBC, MBN, and microbial utilization rate of carbon sources, improve soil fertility, and maintain a better crop productivity.

Source apportionment of elevated wintertime PAHs by compound-specific radiocarbon analysis

NASA Astrophysics Data System (ADS)

Sheesley, R. J.; Kruså, M.; Krecl, P.; Johansson, C.; Gustafsson, Ã.-.

2009-05-01

Natural abundance radiocarbon analysis facilitates distinct source apportionment between contemporary biomass/biofuel (14C "alive") versus fossil fuel (14C "dead") combustion. Here, the first compound-specific radiocarbon analysis (CSRA) of atmospheric polycyclic aromatic hydrocarbons (PAHs) was demonstrated for a set of samples collected in Lycksele, Sweden a small town with frequent episodes of severe atmospheric pollution in the winter. Renewed interest in using residential wood combustion (RWC) means that this type of seasonal pollution is of increasing concern in many areas. Five individual/paired PAH isolates from three pooled fortnight-long filter collections were analyzed by CSRA: phenanthrene, fluoranthene, pyrene, benzo[b+k]fluoranthene and indeno[cd]pyrene plus benzo[ghi]perylene; phenanthrene was the only compound also analyzed in the gas phase. The measured Δ14C for PAHs spanned from -138.3‰ to 58.0‰. A simple isotopic mass balance model was applied to estimate the fraction biomass (fbiomass) contribution, which was constrained to 71-87% for the individual PAHs. Indeno[cd]pyrene plus benzo[ghi]perylene had an fbiomass of 71%, while fluoranthene and phenanthrene (gas phase) had the highest biomass contribution at 87%. The total organic carbon (TOC, defined as carbon remaining after removal of inorganic carbon) fbiomass was estimated to be 77%, which falls within the range for PAHs. This CSRA data of atmospheric PAHs established that RWC is the dominating source of atmospheric PAHs to this region of the boreal zone with some variations among RWC contributions to specific PAHs.

The carbon storage regulator (Csr) system exerts a nutrient-specific control over central metabolism in Escherichia coli strain Nissle 1917.

PubMed

Revelles, Olga; Millard, Pierre; Nougayrède, Jean-Philippe; Dobrindt, Ulrich; Oswald, Eric; Létisse, Fabien; Portais, Jean-Charles

2013-01-01

The role of the post-transcriptional carbon storage regulator (Csr) system in nutrient utilization and in the control of the central metabolism in E. coli reference commensal strain Nissle 1917 was investigated. Analysis of the growth capabilities of mutants altered for various components of the Csr system (csrA51, csrB, csrC and csrD mutations) showed that only the protein CsrA - the key component of the system - exerts a marked role in carbon nutrition. Attenuation of CsrA activity in the csrA51 mutant affects the growth efficiency on a broad range of physiologically relevant carbon sources, including compounds utilized by the Entner-Doudoroff (ED) pathway. Detailed investigations of the metabolomes and fluxomes of mutants and wild-type cells grown on carbon sources representative of glycolysis and of the ED pathway (glucose and gluconate, respectively), revealed significant re-adjusting of central carbon metabolism for both compounds in the csrA51 mutant. However, the metabolic re-adjusting observed on gluconate was strikingly different from that observed on glucose, indicating a nutrient-specific control of metabolism by the Csr system.

The Carbon Storage Regulator (Csr) System Exerts a Nutrient-Specific Control over Central Metabolism in Escherichia coli Strain Nissle 1917

PubMed Central

Nougayrède, Jean-Philippe; Dobrindt, Ulrich; Oswald, Eric; Létisse, Fabien; Portais, Jean-Charles

2013-01-01

The role of the post-transcriptional carbon storage regulator (Csr) system in nutrient utilization and in the control of the central metabolism in E. coli reference commensal strain Nissle 1917 was investigated. Analysis of the growth capabilities of mutants altered for various components of the Csr system (csrA51, csrB, csrC and csrD mutations) showed that only the protein CsrA - the key component of the system - exerts a marked role in carbon nutrition. Attenuation of CsrA activity in the csrA51 mutant affects the growth efficiency on a broad range of physiologically relevant carbon sources, including compounds utilized by the Entner-Doudoroff (ED) pathway. Detailed investigations of the metabolomes and fluxomes of mutants and wild-type cells grown on carbon sources representative of glycolysis and of the ED pathway (glucose and gluconate, respectively), revealed significant re-adjusting of central carbon metabolism for both compounds in the csrA51 mutant. However, the metabolic re-adjusting observed on gluconate was strikingly different from that observed on glucose, indicating a nutrient-specific control of metabolism by the Csr system. PMID:23840455

Using natural biomass microorganisms for drinking water denitrification.

PubMed

Costa, Darleila Damasceno; Gomes, Anderson Albino; Fernandes, Mylena; Lopes da Costa Bortoluzzi, Roseli; Magalhães, Maria de Lourdes Borba; Skoronski, Everton

2018-07-01

Among the methods that are studied to eliminate nitrate from drinking water, biological denitrification is an attractive strategy. Although several studies report the use of denitrifying bacteria for nitrate removal, they usually involve the use of sewage sludge as biomass to obtain the microbiota. In the present study, denitrifying bacteria was isolated from bamboo, and variable parameters were controlled focusing on optimal bacterial performance followed by physicochemical analysis of water adequacy. In this way, bamboo was used as a source of denitrifying microorganisms, using either Immobilized Microorganisms (IM) or Suspended Microorganisms (SM) for nitrate removal. Denitrification parameters optimization was carried out by analysis of denitrification at different pH values, temperature, nitrate concentrations, carbon sources as well as different C/N ratios. In addition, operational stability and denitrification kinetics were evaluated. Microorganisms present in the biomass responsible for denitrification were identified as Proteus mirabilis. The denitrified water was submitted to physicochemical treatment such as coagulation and flocculation to adjust to the parameters of color and turbidity to drinking water standards. Denitrification using IM occurred with 73% efficiency in the absence of an external carbon source. The use of SM provided superior denitrification efficiency using ethanol (96.46%), glucose (98.58%) or glycerol (98.5%) as carbon source. The evaluation of the operational stability allowed 12 cycles of biomass reuse using the IM and 9 cycles using the SM. After physical-chemical treatment, only SM denitrified water remained within drinking water standards parameters of color and turbidity. Copyright © 2018 Elsevier Ltd. All rights reserved.

One-step microwave synthesis of photoluminescent carbon nanoparticles from sodium dextran sulfate water solution

NASA Astrophysics Data System (ADS)

Kokorina, Alina A.; Goryacheva, Irina Y.; Sapelkin, Andrei V.; Sukhorukov, Gleb B.

2018-04-01

Photoluminescent (PL) carbon nanoparticles (CNPs) have been synthesized by one-step microwave irradiation from water solution of sodium dextran sulfate (DSS) as the sole carbon source. Microwave (MW) method is very simple and cheap and it provides fast synthesis of CNPs. We have varied synthesis time for obtaining high luminescent CNPs. The synthesized CNPs exhibit excitation-dependent photoluminescent. Final CNPs water solution has a blue- green luminescence. CNPs have low cytotoxicity, good photostability and can be potentially suitable candidates for bioimaging, analysis or analytical tests.

EFFECT OF TEMPERATURE ON THE C ISOTOPIC VALUE OF MICROBIAL LIPIDS APPLIED TO DETERMINE C USAGE IN MICROBIAL COMMUNITIES

EPA Science Inventory

The combination of compound specific stable isotopic analysis with phospholipid fatty acid (PLFAS) analysis is useful in determining the source of organic carbon used by groups of a microbial community. Determination of the effect of certain environmental parameters is important ...

Synthesis and electrochemical properties of olivine LiFePO 4 prepared by a carbothermal reduction method

NASA Astrophysics Data System (ADS)

Liu, Hui-ping; Wang, Zhi-xing; Li, Xin-hai; Guo, Hua-jun; Peng, Wen-jie; Zhang, Yun-he; Hu, Qi-yang

LiFePO 4/C composite cathode material was prepared by carbothermal reduction method, which uses NH 4H 2PO 4, Li 2CO 3 and cheap Fe 2O 3 as starting materials, acetylene black and glucose as carbon sources. The precursor of LiFePO 4/C was characterized by differential thermal analysis and thermogravimetry. X-ray diffraction (XRD), scanning electron microscopy (SEM) micrographs showed that the LiFePO 4/C is olivine-type phase, and the addition of the carbon reduced the LiFePO 4 grain size. The carbon is dispersed between the grains, ensuring a good electronic contact. The products sintered at 700 °C for 8 h with glucose as carbon source possessed excellent electrochemical performance. The synthesized LiFePO 4 composites showed a high electrochemical capacity of 159.3 mAh g -1 at 0.1 C rate, and the capacity fading is only 2.2% after 30 cycles.

Decarboxylation of Carbon Compounds as a Potential Source for CO2 and CO Observed by SAM at Yellowknife Bay, Gale Crater, Mars

NASA Technical Reports Server (NTRS)

Eigenbrode, J. L.; Bower, H.; Archer, P. Jr.

2014-01-01

Martian carbon was detected in the Sheepbed mudtsone at Yellowknife Bay, Gale Crater, Mars by the Sample Analysis at Mars (SAM) instrument onboard Curiosity, the rover of the Mars Science Laboratory missio]. The carbon was detected as CO2 thermally evolved from drilled and sieved rock powder that was delivered to SAM as a <150-micron-particle- size fraction. Most of the CO2 observed in the Cumberland (CB) drill hole evolved between 150deg and 350deg C. In the John Klein (JK) drill hole, the CO2 evolved up to 500deg C. Hypotheses for the source of the the CO2 include the breakdown of carbonate minerals reacting with HCl released from oxychlorine compounds, combustion of organic matter by O2 thermally evolved from the same oxychlorine minerals, and the decarboxylation of organic molecules indigenous to the martian rock sample. Here we explore the potential for the decarboxylation hypothesis.

Determination of microbial carbon sources and cycling during remediation of petroleum hydrocarbon impacted soil using natural abundance (14)C analysis of PLFA.

PubMed

Cowie, Benjamin R; Greenberg, Bruce M; Slater, Gregory F

2010-04-01

In a petroleum impacted land-farm soil in Sarnia, Ontario, compound-specific natural abundance radiocarbon analysis identified biodegradation by the soil microbial community as a major pathway for hydrocarbon removal in a novel remediation system. During remediation of contaminated soils by a plant growth promoting rhizobacteria enhanced phytoremediation system (PEPS), the measured Delta(14)C of phospholipid fatty acid (PLFA) biomarkers ranged from -793 per thousand to -897 per thousand, directly demonstrating microbial uptake and utilization of petroleum hydrocarbons (Delta(14)C(PHC) = -1000 per thousand). Isotopic mass balance indicated that more than 80% of microbial PLFA carbon was derived from petroleum hydrocarbons (PHC) and a maximum of 20% was obtained from metabolism of more modern carbon sources. These PLFA from the contaminated soils were the most (14)C-depleted biomarkers ever measured for an in situ environmental system, and this study demonstrated that the microbial community in this soil was subsisting primarily on petroleum hydrocarbons. In contrast, the microbial community in a nearby uncontaminated control soil maintained a more modern Delta(14)C signature than total organic carbon (Delta(14)C(PLFA) = +36 per thousand to -147 per thousand, Delta(14)C(TOC) = -148 per thousand), indicating preferential consumption of the most modern plant-derived fraction of soil organic carbon. Measurements of delta(13)C and Delta(14)C of soil CO(2) additionally demonstrated that mineralization of PHC contributed to soil CO(2) at the contaminated site. The CO(2) in the uncontaminated control soil exhibited substantially more modern Delta(14)C values, and lower soil CO(2) concentrations than the contaminated soils, suggesting increased rates of soil respiration in the contaminated soils. In combination, these results demonstrated that biodegradation in the soil microbial community was a primary pathway of petroleum hydrocarbon removal in the PEPS system. This study highlights the power of natural abundance radiocarbon for determining microbial carbon sources and identifying biodegradation pathways in complex remediation systems.

Gridded anthropogenic emissions inventory and atmospheric transport of carbonyl sulfide in the U.S.: U.S. Anthropogenic COS Source and Transport

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zumkehr, Andrew; Hilton, Timothy W.; Whelan, Mary

Carbonyl sulfide (COS or OCS), the most abundant sulfur containing gas in the troposphere, has recently emerged as a potentially important atmospheric tracer for the carbon cycle. Atmospheric inverse modeling studies may be able to use existing tower, airborne, and satellite observations of COS to infer information about photosynthesis. However, such analysis relies on gridded anthropogenic COS source estimates that are largely based on industry activity data from over three decades ago. Here we use updated emission factor data and industry activity data to develop a gridded inventory with a 0.1 degree resolution for the U.S. domain. The inventory includesmore » the primary anthropogenic COS sources including direct emissions from the coal and aluminum industries as well as indirect sources from industrial carbon disulfide emissions. Compared to the previously published inventory, we found that the total anthropogenic source (direct and indirect) is 47% smaller. Using this new gridded inventory to drive the STEM/WRF atmospheric transport model, we found that the anthropogenic contribution to COS variation in the troposphere is small relative to the biosphere influence, which is encouraging of carbon cycle applications in this region. Additional anthropogenic sectors with highly uncertain emission factors require further field measurements.« less

Organic tracer-based source analysis of PM2.5 organic and elemental carbon: A case study at Dongguan in the Pearl River Delta, China

NASA Astrophysics Data System (ADS)

Wang, Qiong Qiong; Huang, X. H. Hilda; Zhang, Ting; Zhang, Qingyan; Feng, Yongming; Yuan, Zibing; Wu, Dui; Lau, Alexis K. H.; Yu, Jian Zhen

2015-10-01

Organic carbon (OC) and elemental carbon (EC) are major constituents of PM2.5 and their source apportionment remains a challenging task due to the great diversity of their sources and lack of source-specific tracer data. In this work, sources of OC and EC are investigated using positive matrix factorization (PMF) analysis of PM2.5 chemical composition data, including major ions, OC, EC, elements, and organic molecular source markers, for a set of 156 filter samples collected over three years from 2010 to 2012 at Dongguan in the Pearl River Delta, China. The key organic tracers include levoglucosan, mannosan, hopanes, C27-C33n-alkanes, and polycyclic aromatic hydrocarbons (PAHs). Using these species as input for the PMF model, nine factors were resolved. Among them, biomass burning and coal combustion were significant sources contributing 15-17% of OC and 24-30% and 34-35% of EC, respectively. Industrial emissions and ship emissions, identified through their characteristic metal signatures, contributed 16-24% and 7-8% of OC and 8-11% and 16-17% of EC, respectively. Vehicle exhaust was a less significant source, accounting for 3-4% of OC and 5-8% of EC. Secondary OC, taken to be the sum of OC present in secondary sulfate and nitrate formation source factors, made up 27-36% of OC. Plastic burning, identified through 1,3,5-triphenylbenzene as a tracer, was a less important source for OC(≤4%) and EC (5-10%), but a significant source for PAHs at this site. The utility of organic source tracers was demonstrated by comparing PMF runs with different combinations of organic tracers removed from the input species list. Levoglucosan and mannosan were important additions to distinguish biomass burning from coal combustion by reducing collinearity among source profiles. Inclusion of hopanes and 1,3,5-triphenylbenzene was found to be necessary in resolving the less significant sources vehicle exhaust and plastic burning. Inclusion of C27-C33n-alkanes and PAHs can influence the source profiles resolved by PMF and thereby affect the source contributions to OC and EC. Considerably more OC (44% vs. 27% of OC) was apportioned to the secondary factors when only major components were considered in comparison with the PMF analysis with the full suite of organic tracers, mainly at the expense of coal combustion and industrial emissions. EC apportionment to the few major combustion sources was found more sensitive to inclusion of organic tracers than OC apportionment, with PAHs playing a prominent role. This work demonstrates the importance of having distinct organic tracers in identifying and quantifying OC and EC sources.

Improving source identification of Atlanta aerosol using temperature resolved carbon fractions in positive matrix factorization

NASA Astrophysics Data System (ADS)

Kim, Eugene; Hopke, Philip K.; Edgerton, Eric S.

Daily integrated PM 2.5 (particulate matter ⩽2.5 μm in aerodynamic diameter) composition data including eight individual carbon fractions collected at the Jefferson Street monitoring site in Atlanta were analyzed with positive matrix factorization (PMF). Particulate carbon was analyzed using the thermal optical reflectance method that divides carbon into four organic carbon (OC), pyrolized organic carbon (OP), and three elemental carbon (EC) fractions. A total of 529 samples and 28 variables were measured between August 1998 and August 2000. PMF identified 11 sources in this study: sulfate-rich secondary aerosol I (50%), on-road diesel emissions (11%), nitrate-rich secondary aerosol (9%), wood smoke (7%), gasoline vehicle (6%), sulfate-rich secondary aerosol II (6%), metal processing (3%), airborne soil (3%), railroad traffic (3%), cement kiln/carbon-rich (2%), and bus maintenance facility/highway traffic (2%). Differences from previous studies using only the traditional OC and EC data (J. Air Waste Manag. Assoc. 53(2003a)731; Atmos Environ. (2003b)) include four traffic-related combustion sources (gasoline vehicle, on-road diesel, railroad, and bus maintenance facility) containing carbon fractions whose abundances were different between the various sources. This study indicates that the temperature resolved fractional carbon data can be utilized to enhance source apportionment study, especially with respect to the separation of diesel emissions from gasoline vehicle sources. Conditional probability functions using surface wind data and identified source contributions aid the identifications of local point sources.

40 CFR 458.45 - Standards of performance for new sources.

Code of Federal Regulations, 2011 CFR

2011-07-01

...) EFFLUENT GUIDELINES AND STANDARDS CARBON BLACK MANUFACTURING POINT SOURCE CATEGORY Carbon Black Lamp... paragraph, which may be discharged from the carbon black lamp process by a new source subject to the...

Verification of Methods for Assessing the Sustainability of Monitored Natural Attenuation (MNA)

DTIC Science & Technology

2013-01-01

sugars TOC total organic carbon TSR thermal source removal USACE U.S. Army Corps of Engineers USEPA U.S. Environmental Protection Agency USGS...the SZD function for long-term DNAPL dissolution simulations. However, the sustainability assessment was easily implemented using an alternative...neutral sugars [THNS]). Chapelle et al. (2009) suggested THAA and THNS as measures of the bioavailability of organic carbon based on an analysis of

REPORT TO CONGRESS ON BLACK CARBON | Science ...

EPA Pesticide Factsheets

The Report to Congress on Black Carbon describes domestic and international sources of black carbon emissions, and summarizes available scientific information on the climate effects of black carbon. Further, the Report evaluates available black carbon mitigation options and their potential for protecting climate, public health, and the environment. The EPA Advisory Council on Clean Air Compliance Analysis has peer-reviewed the report. In the October 2009 Interior Appropriations bill, Congress requested that EPA, in consultation with other Federal agencies, study the emissions and impacts of black carbon in the US and internationally. To fulfill this charge, EPA has conducted an intensive effort to compile, assess, and summarize available scientific information on the current and future impacts of black carbon, and to evaluate the effectiveness of available mitigation approaches and technologies for protecting climate, public health, and the environment.

Variation of atmospheric carbon monoxide over the Arctic Ocean during summer 2012

NASA Astrophysics Data System (ADS)

Park, Keyhong; Siek Rhee, Tae; Emmons, Louisa

2014-05-01

Atmospheric carbon monoxide (CO) plays an important role in ozone-related chemistry in the troposphere, especially under low-NOx conditions like the open ocean. During summer 2012, we performed a continuous high-resolution (0.1Hz) shipboard measurement of atmospheric CO over the Arctic Ocean. We also simulated the observation using a 3-D global chemical transport model (the Model for OZone And Related chemical Tracers-4; MOZART-4) for further analysis of the observed results. In the model, tags for each sources and emission regions of CO are applied and this enables us to delineate the source composition of the observations. Along with the observed variation of CO concentration during the research cruise, we will present in detailed analysis of the variation of source components and change of regional contributions. We found large (~80ppbv) variation of CO concentration in the Arctic Ocean which is mostly influenced by the variation of biomass burning activity. The contribution of anthropogenic emission is limited over the Arctic Ocean, although the northeast Asian anthropogenic emission shows a dominant component of transported anthropogenic CO. Also, our analysis shows, near the Bering Strait, Europe is the main emission region for anthropogenic CO.

Dual-Carbon sources fuel the OCS deep-reef Community, a stable isotope investigation

USGS Publications Warehouse

Sulak, Kenneth J.; Berg, J.; Randall, Michael T.; Dennis, George D.; Brooks, R.A.

2008-01-01

The hypothesis that phytoplankton is the sole carbon source for the OCS deep-reef community (>60 m) was tested. Trophic structure for NE Gulf of Mexico deep reefs was analyzed via carbon and nitrogen stable isotopes. Carbon signatures for 114 entities (carbon sources, sediment, fishes, and invertebrates) supported surface phytoplankton as the primary fuel for the deep reef. However, a second carbon source, the macroalga Sargassum, with its epiphytic macroalgal associate, Cladophora liniformis, was also identified. Macroalgal carbon signatures were detected among 23 consumer entities. Most notably, macroalgae contributed 45 % of total carbon to the 13C isotopic spectrum of the particulate-feeding reef-crest gorgonian Nicella. The discontinuous spatial distribution of some sessile deep-reef invertebrates utilizing pelagic macroalgal carbon may be trophically tied to the contagious distribution of Sargassum biomass along major ocean surface features.

Functionalized Natural Carbon-Supported Nanoparticles as Excellent Catalysts for Hydrocarbon Production.

PubMed

Sun, Jian; Guo, Lisheng; Ma, Qingxiang; Gao, Xinhua; Yamane, Noriyuki; Xu, Hengyong; Tsubaki, Noritatsu

2017-02-01

We report a one-pot and eco-friendly synthesis of carbon-supported cobalt nanoparticles, achieved by carbonization of waste biomass (rice bran) with a cobalt source. The functionalized biomass provides carbon microspheres as excellent catalyst support, forming a unique interface between hydrophobic and hydrophilic groups. The latter, involving hydroxyl and amino groups, can catch much more active cobalt nanoparticles on surface for Fischer-Tropsch synthesis than chemical carbon. The loading amount of cobalt on the final catalyst is much higher than that prepared with a chemical carbon source, such as glucose. The proposed concept of using a functionalized natural carbon source shows great potential compared with conventional carbon sources, and will be meaningful for other fields concerning carbon support, such as heterogeneous catalysis or electrochemical fields. © 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Impact of the 2008 Wenchuan earthquake on river organic carbon provenance: Insight from biomarkers

NASA Astrophysics Data System (ADS)

Wang, Jin; Feng, Xiaojuan; Hilton, Robert; Jin, Zhangdong; Ma, Tian; Zhang, Fei; Li, Gen; Densmore, Alexander; West, A. Joshua

2017-04-01

Large earthquakes can trigger widespread landslides in active mountain belts, which can mobilize biospheric organic carbon (OC) from the soil and vegetation. Rivers can erode and export biospheric particulate organic carbon (POC), which is an export of ecosystem productivity and may result in a CO2 sink if buried in sedimentary deposits. Our previous work showed that the 2008 Mw 7.9 Wenchuan earthquake increased the discharge of biospheric OC by rivers, due to the increased supply by earthquake triggered landslides (Wang et al., 2016). However, while the OC derived from sedimentary rocks could be accounted for, the source of biospheric OC in rivers before and after the earthquake remains poorly constrained. Here we use suspended sediment samples collected from the Zagunao River before and after the Wenchuan earthquake and measured the specific compounds of OC, including fatty acids, lignin phenols and glycerol dialkyl glycerol tetraether (GDGT) lipids. In combination with the analysis of bulk elemental concentration (C and N) and carbon isotopic ratio, the new data shows differential export patterns for OC components derived from varied terrestrial sources. A high frequency sampling enabled us to explore how the biospheric OC source changes following the earthquake, helping to better understand the link between active tectonics and the carbon cycle. Our results are also important in revealing how sedimentary biomarker records may record past earthquakes.

Proteomic analysis of the thermophilic methylotroph Bacillus methanolicus MGA3.

PubMed

Müller, Jonas E N; Litsanov, Boris; Bortfeld-Miller, Miriam; Trachsel, Christian; Grossmann, Jonas; Brautaset, Trygve; Vorholt, Julia A

2014-03-01

Bacillus methanolicus MGA3 is a facultative methylotroph of industrial relevance that is able to grow on methanol as its sole source of carbon and energy. The Gram-positive bacterium possesses a soluble NAD(+) -dependent methanol dehydrogenase and assimilates formaldehyde via the ribulose monophosphate (RuMP) cycle. We used label-free quantitative proteomics to generate reference proteome data for this bacterium and compared the proteome of B. methanolicus MGA3 on two different carbon sources (methanol and mannitol) as well as two different growth temperatures (50°C and 37°C). From a total of approximately 1200 different detected proteins, approximately 1000 of these were used for quantification. While the levels of 213 proteins were significantly different at the two growth temperatures tested, the levels of 109 proteins changed significantly when cells were grown on different carbon sources. The carbon source strongly affected the synthesis of enzymes related to carbon metabolism, and in particular, both dissimilatory and assimilatory RuMP cycle enzyme levels were elevated during growth on methanol compared to mannitol. Our data also indicate that B. methanolicus has a functional tricarboxylic acid cycle, the proteins of which are differentially regulated on mannitol and methanol. Other proteins presumed to be involved in growth on methanol were constitutively expressed under the different growth conditions. All MS data have been deposited in the ProteomeXchange with the identifiers PXD000637 and PXD000638 (http://proteomecentral.proteomexchange.org/dataset/PXD000637, http://proteomecentral.proteomexchange.org/dataset/PXD000638). © 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Transported vs. local contributions from secondary and biomass burning sources to PM2.5

NASA Astrophysics Data System (ADS)

Kim, Bong Mann; Seo, Jihoon; Kim, Jin Young; Lee, Ji Yi; Kim, Yumi

2016-11-01

The concentration of fine particulates in Seoul, Korea has been lowered over the past 10 years, as a result of the city's efforts in implementing environmental control measures. Yet, the particulate concentration level in Seoul remains high as compared to other urban areas globally. In order to further improve fine particulate air quality in the Korea region and design a more effective control strategy, enhanced understanding of the sources and contribution of fine particulates along with their chemical compositions is necessary. In turn, relative contributions from local and transported sources on Seoul need to be established, as this city is particularly influenced by sources from upwind geographic areas. In this study, PM2.5 monitoring was conducted in Seoul from October 2012 to September 2013. PM2.5 mass concentrations, ions, metals, organic carbon (OC), elemental carbon (EC), water soluble OC (WSOC), humic-like substances of carbon (HULIS-C), and 85 organic compounds were chemically analyzed. The multivariate receptor model SMP was applied to the PM2.5 data, which then identified nine sources and estimated their source compositions as well as source contributions. Prior studies have identified and quantified the transported and local sources. However, no prior studies have distinguished contributions of an individual source between transported contribution and locally produced contribution. We differentiated transported secondary and biomass burning sources from the locally produced secondary and biomass burning sources, which was supported with potential source contribution function (PSCF) analysis. Of the total secondary source contribution, 32% was attributed to transported secondary sources, and 68% was attributed to locally formed secondary sources. Meanwhile, the contribution from the transported biomass burning source was revealed as 59% of the total biomass burning contribution, which was 1.5 times higher than that of the local biomass burning source. Four-season average source contributions from the transported and the local sources were 28% and 72%, respectively.

Anomalous elevated radiocarbon measurements of PM2.5

NASA Astrophysics Data System (ADS)

Buchholz, Bruce A.; Fallon, Stewart J.; Zermeño, Paula; Bench, Graham; Schichtel, Bret A.

2013-01-01

Two-component models are often used to determine the contributions made by fossil fuel and natural sources of carbon in airborne particulate matter (PM). The models reduce thousands of actual sources to two end members based on isotopic signature. Combustion of fossil fuels produces PM free of carbon-14 (14C). Wood or charcoal smoke, restaurant fryer emissions, and natural emissions from plants produce PM with the contemporary concentration of 14C approximately 1.2 × 10-1214C/C. Such data can be used to estimate the relative contributions of fossil fuels and biogenic aerosols to the total aerosol loading and radiocarbon analysis is becoming a popular source apportionment method. Emissions from incinerators combusting medical or biological wastes containing tracer 14C can skew the 14C/C ratio of PM, however, so critical analysis of sampling sites for possible sources of elevated PM needs to be completed prior to embarking on sampling campaigns. Results are presented for two ambient monitoring sites in different areas of the United States where 14C contamination is apparent. Our experience suggests that such contamination is uncommon but is also not rare (∼10%) for PM sampling sites.

Application of Monte Carlo Methods to Perform Uncertainty and Sensitivity Analysis on Inverse Water-Rock Reactions with NETPATH

DOE Office of Scientific and Technical Information (OSTI.GOV)

McGraw, David; Hershey, Ronald L.

Methods were developed to quantify uncertainty and sensitivity for NETPATH inverse water-rock reaction models and to calculate dissolved inorganic carbon, carbon-14 groundwater travel times. The NETPATH models calculate upgradient groundwater mixing fractions that produce the downgradient target water chemistry along with amounts of mineral phases that are either precipitated or dissolved. Carbon-14 groundwater travel times are calculated based on the upgradient source-water fractions, carbonate mineral phase changes, and isotopic fractionation. Custom scripts and statistical code were developed for this study to facilitate modifying input parameters, running the NETPATH simulations, extracting relevant output, postprocessing the results, and producing graphs and summaries.more » The scripts read userspecified values for each constituent’s coefficient of variation, distribution, sensitivity parameter, maximum dissolution or precipitation amounts, and number of Monte Carlo simulations. Monte Carlo methods for analysis of parametric uncertainty assign a distribution to each uncertain variable, sample from those distributions, and evaluate the ensemble output. The uncertainty in input affected the variability of outputs, namely source-water mixing, phase dissolution and precipitation amounts, and carbon-14 travel time. Although NETPATH may provide models that satisfy the constraints, it is up to the geochemist to determine whether the results are geochemically reasonable. Two example water-rock reaction models from previous geochemical reports were considered in this study. Sensitivity analysis was also conducted to evaluate the change in output caused by a small change in input, one constituent at a time. Results were standardized to allow for sensitivity comparisons across all inputs, which results in a representative value for each scenario. The approach yielded insight into the uncertainty in water-rock reactions and travel times. For example, there was little variation in source-water fraction between the deterministic and Monte Carlo approaches, and therefore, little variation in travel times between approaches. Sensitivity analysis proved very useful for identifying the most important input constraints (dissolved-ion concentrations), which can reveal the variables that have the most influence on source-water fractions and carbon-14 travel times. Once these variables are determined, more focused effort can be applied to determining the proper distribution for each constraint. Second, Monte Carlo results for water-rock reaction modeling showed discrete and nonunique results. The NETPATH models provide the solutions that satisfy the constraints of upgradient and downgradient water chemistry. There can exist multiple, discrete solutions for any scenario and these discrete solutions cause grouping of results. As a result, the variability in output may not easily be represented by a single distribution or a mean and variance and care should be taken in the interpretation and reporting of results.« less

Assessment of Contribution of Contemporary Carbon Sources to Size-Fractionated Particulate Matter and Time-Resolved Bulk Particulate Matter Using the Measurement of Radiocarbon

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hwang, H M; Young, T M; Buchholz, B A

2009-04-16

This study was motivated by a desire to improve understanding of the sources contributing to the carbon that is an important component of airborne particulate matter (PM). The ultimate goal of this project was to lay a ground work for future tools that might be easily implemented with archived or routinely collected samples. A key feature of this study was application of radiocarbon measurement that can be interpreted to indicate the relative contributions from fossil and non-fossil carbon sources of atmospheric PM. Size-resolved PM and time-resolved PM{sub 10} collected from a site in Sacramento, CA in November 2007 (Phase I)more » and March 2008 (Phase II) were analyzed for radiocarbon and source markers such as levoglucosan, cholesterol, and elemental carbon. Radiocarbon data indicates that the contributions of non-fossil carbon sources were much greater than that from fossil carbon sources in all samples. Radiocarbon and source marker measurements confirm that a greater contribution of non-fossil carbon sources in Phase I samples was highly likely due to residential wood combustion. The present study proves that measurement of radiocarbon and source markers can be readily applied to archived or routinely collected samples for better characterization of PM sources. More accurate source apportionment will support ARB in developing more efficient control strategies.« less

Implications of Deep Decarbonization for Carbon Cycle Science

NASA Astrophysics Data System (ADS)

Jones, A. D.; Williams, J.; Torn, M. S.

2016-12-01

The energy-system transformations required to achieve deep decarbonization in the United States, defined as a reduction of greenhouse gas emissions of 80% or more below 1990 levels by 2050, have profound implications for carbon cycle science, particularly with respect to 4 key objectives: understanding and enhancing the terrestrial carbon sink, using bioenergy sustainably, controlling non-CO2 GHGs, and emissions monitoring and verification. (1) As a source of mitigation, the terrestrial carbon sink is pivotal but uncertain, and changes in the expected sink may significantly affect the overall cost of mitigation. Yet the dynamics of the sink under changing climatic conditions, and the potential to protect and enhance the sink through land management, are poorly understood. Policy urgently requires an integrative research program that links basic science knowledge to land management practices. (2) Biomass resources can fill critical energy needs in a deeply decarbonized system, but current understanding of sustainability and lifecycle carbon aspects is limited. Mitigation policy needs better understanding of the sustainable amount, types, and cost of bioenergy feedstocks, their interactions with other land uses, and more efficient and reliable monitoring of embedded carbon. (3) As CO2 emissions from energy decrease under deep decarbonization, the relative share of non-CO2 GHGs grows larger and their mitigation more important. Because the sources tend to be distributed, variable, and uncertain, they have been under-researched. Policy needs a better understanding of mitigation priorities and costs, informed by deeper research in key areas such as fugitive CH4, fertilizer-derived N2O, and industrial F-gases. (4) The M&V challenge under deep decarbonization changes with a steep decrease in the combustion CO2 sources due to widespread electrification, while a greater share of CO2 releases is net-carbon-neutral. Similarly, gas pipelines may carry an increasing share of methane from biogenic or other net carbon-neutral sources. Improved lifecycle analysis will be needed to verify carbon neutrality, while the signal-to-noise challenge for attributing CO2 to fossil or biogenic fuels becomes more challenging.

Taking a bite out of Scotland's dental carbon emissions in the transition to a low carbon future.

PubMed

Duane, B; Hyland, J; Rowan, J S; Archibald, B

2012-09-01

Climate change is a significant global health threat requiring concerted action to reduce greenhouse gas emissions. This study provides the first systematic attempt to quantify the carbon emissions of a national dental service. Carbon accounting combined a top-down approach using input-output analysis for indirect emissions (procurement) and a process analysis (bottom-up) approach for direct emissions (building energy, travel, waste and water). Energy and water consumption were based on meter readings, waste-related emissions from collection contracts and travel from staff and patient questionnaires. Dental companies were approached for carbon footprint data on their products. The carbon footprint for the service was 1798.9 tonnes CO(2)eq per annum. Travel was the greatest source (45.1%) followed by procurement (35.9%) and building energy (18.3%). Perhaps counter-intuitively older clinics had lower footprints than newer clinics as they are less energy intensive. Extrapolating the data suggests that Scotland's NHS dental service annually generates 0.16 mega tonne (Mt)CO(2)eq (4%) of the total Scottish NHS carbon footprint. The lack of comprehensive data reduces the ability to effectively manage emissions. Consideration needs to be given to the impact of patient travel, staff travel and new clinic construction on the carbon footprint. Medical suppliers are encouraged to provide life cycle analysis (LCA) for dental products. Crown Copyright © 2012. Published by Elsevier Ltd. All rights reserved.

The use of fermentation liquid of wastewater primary sedimentation sludge as supplemental carbon source for denitrification based on enhanced anaerobic fermentation.

PubMed

Liu, Feng; Tian, Yu; Ding, Yi; Li, Zhipeng

2016-11-01

Wastewater primary sedimentation sludge was prepared into fermentation liquid as denitrification carbon source, and the main components of fermentation liquid was short-chain volatile fatty acids. Meanwhile, the acetic acid and propionic acid respectively accounted for about 29.36% and 26.56% in short-chain volatile fatty acids. The performance of fermentation liquid, methanol, acetic acid, propionic acid and glucose used as sole carbon source were compared. It was found that the denitrification rate with fermentation liquid as carbon source was 0.17mgNO3(-)-N/mg mixed liquor suspended solid d, faster than that with methanol, acetic acid, and propionic acid as sole carbon source, and lower than that with glucose as sole carbon source. For the fermentation liquid as carbon source, the transient accumulation of nitrite was insignificantly under different initial total nitrogen concentration. Therefore, the use of fermentation liquid for nitrogen removal could improve denitrification rate, and reduce nitrite accumulation in denitrification process. Copyright © 2016 Elsevier Ltd. All rights reserved.

Characterization and Genomic Analysis of a Highly Efficient Dibutyl Phthalate-Degrading Bacterium Gordonia sp. Strain QH-12.

PubMed

Jin, Decai; Kong, Xiao; Liu, Huijun; Wang, Xinxin; Deng, Ye; Jia, Minghong; Yu, Xiangyang

2016-06-25

A bacterial strain QH-12 isolated from activated sludge was identified as Gordonia sp. based on analysis of 16S rRNA gene sequence and was found to be capable of utilizing dibutyl phthalate (DBP) and other common phthalate esters (PAEs) as the sole carbon and energy source. The degradation kinetics of DBP under different concentrations by the strain QH-12 fit well with the modified Gompertz model (R² > 0.98). However, strain QH-12 could not utilize the major intermediate product phthalate (phthalic acid; PA) as the sole carbon and energy source, and only a little amount of PA was detected. The QH-12 genome analysis revealed the presence of putative hydrolase/esterase genes involved in PAEs-degradation but no phthalic acid catabolic gene cluster was found, suggesting that a novel degradation pathway of PAEs was present in Gordonia sp. QH-12. This information will be valuable for obtaining a more holistic understanding on diverse genetic mechanisms of PAEs-degrading Gordonia sp. strains.

An Ocean Basin of Dirt? Using Molecular Biomarkers and Radiocarbon to Identify Organic Carbon Sources and their Preservation in the Arctic Ocean

NASA Astrophysics Data System (ADS)

Harvey, H.; Belicka, L. L.

2005-12-01

In the modern Arctic Ocean, primary production in waters over the broad continental shelves and under ice contributes an estimated 250 Mt/yr of POC to Arctic waters. The delivery of terrestrial material from large rivers, ice transport and through coastal erosion adds at least an additional 12 Mt/yr of POC. Although the marine organic carbon signal in Arctic Ocean exceeds that of terrestrial carbon by an order or magnitude or more, recent evidence suggests that this balance is not maintained and significant fractions of terrestrial carbon is preserved in sediments. Using an integrated approach combining lipid biomarkers and radiocarbon dating in particles and sediments, the process of organic carbon recycling and historical changes in its sources and preservation has been examined. A suite of lipid biomarkers in particles and sediments of western Arctic shelves and basins were measured and principle components analysis (PCA) used to allow a robust comparison among the 120+ individual compounds to assign organic sources and relative inputs. Offshore particles from the chlorophyll maximum contained abundant algal markers (e.g. 20:5 and 22:6 FAMEs), low concentrations of terrestrial markers (amyrins and 24-ethylcholest-5-en-3b-ol), and reflected modern 14C values. Particles present in deeper halocline waters also reflect marine production, but a portion of older, terrestrial carbon accompanies the sinking of the spring bloom. Surface and deeper sediments of basins contain older organic carbon and low concentrations of algal biomarkers, suggesting that marine carbon produced in surface waters is rapidly recycled. Taken together, these observations suggest that marine derived organic matter produced in shallow waters fuels carbon cycling, but relatively small amounts are preserved in sediments. As a result, the organic carbon preserved in sediments contrasts sharply to that typically observed in lower latitudes, with an increasing terrestrial signature with distance from land and potential for significant changes under a changing climate.

Deep Soil Carbon Influenced Following Forest Organic Matter Manipulation In A Loblolly Pine Plantation In The Southeastern United States

NASA Astrophysics Data System (ADS)

Hatten, J. A.; Mack, J.; Sucre, E.; Leggett, Z.; Roberts, S.; Dewey, J.

2013-12-01

Forest harvest residues and forest floor materials are significant sources of mineral soil organic matter and nutrients for regenerating and establishing forests. Harvest residues in particular are occasionally removed, piled, or burned following harvesting. Weyerhaeuser Company established an experimental study to evaluate the effect of the removal and addition of harvest residual and forest-floor on site productivity and soil carbon. This study was installed in a loblolly pine plantation near Millport, Alabama, USA on the Upper Gulf Coastal Plain to test both extremes from complete removal of harvest residues and forest floor to doubling of these materials. This study has been continuously monitored since its establishment in 1994. We have examined the effects of varying forest floor levels on the biomass, soil carbon content, and soil carbon composition in the context of these management activities. Above- and below-ground productivity, soil moisture, soil temperature, and nutrient dynamics have been related to soil organic carbon in mineral soil, size/density fractionation, and lignin and cutin biomarkers from the cupric oxide (CuO)-oxidation technique. We have found that while removing litter and harvest residues has little effect on biomass production and soil carbon, importing litter and harvest residues increases forest productivity and soil carbon content. Interestingly, increased carbon was observed in all depths assessed (O horizon, 0-20, 20-40, and 40-60cm) suggesting that this practice may sequester organic carbon in deep soil horizons. Our biomarker analysis indicated that importing litter and harvest residues increased relative contributions from above ground sources at the 20-40cm depth and increased relative contributions from belowground sources at the 40-60cm depth. These results suggest that organic matter manipulations in managed forests can have significant effects on deep soil carbon that may be resistant to mineralization or the effects of other perturbations such as climate change.

Detection of Metabolism Function of Microbial Community of Corpses by Biolog-Eco Method.

PubMed

Jiang, X Y; Wang, J F; Zhu, G H; Ma, M Y; Lai, Y; Zhou, H

2016-06-01

To detect the changes of microbial community functional diversity of corpses with different postmortem interval （PMI） and to evaluate forensic application value for estimating PMI. The cultivation of microbial community from the anal swabs of a Sus scrofa and a human corpse placed in field environment from 0 to 240 h after death was performed using the Biolog-Eco Microplate and the variations of the absorbance values were also monitored. Combined with the technology of forensic pathology and flies succession, the metabolic characteristics and changes of microbial community on the decomposed corpse under natural environment were also observed. The diversity of microbial metabolism function was found to be negatively correlated with the number of maggots in the corpses. The freezing processing had the greatest impact on average well color development value at 0 h and the impact almost disappeared after 48 h. The diversity of microbial metabolism of the samples became relatively unstable after 192 h. The principal component analysis showed that 31 carbon sources could be consolidated for 5 principal components （accumulative contribution ratio >90%）.The carbon source tsquare-analysis showed that N -acetyl- D -glucosamine and L -serine were the dominant carbon sources for estimating the PMI （0=240 h） of the Sus scrofa and human corpse. The Biolog-Eco method can be used to reveal the metabolic differences of the carbon resources utilization of the microbial community on the corpses during 0-240 h after death, which could provide a new basis for estimating the PMI. Copyright© by the Editorial Department of Journal of Forensic Medicine

Selection and Validation of Reference Genes for Quantitative Real-Time Polymerase Chain Reaction Studies in Mossy Maze Polypore, Cerrena unicolor (Higher Basidiomycetes).

PubMed

Yang, Jie; Lin, Qi; Lin, Juan; Ye, Xiuyun

2016-01-01

With its ability to produce ligninolytic enzymes such as laccases, white-rot basidiomycete Cerrena unicolor, a medicinal mushroom, has great potential in biotechnology. Elucidation of the expression profiles of genes encoding ligninolytic enzymes are important for increasing their production. Quantitative real-time polymerase chain reaction (qPCR) is a powerful tool to study transcriptional regulation of genes of interest. To ensure accuracy and reliability of qPCR analysis of C. unicolor, expression levels of seven candidate reference genes were studied at different growth phases, under various induction conditions, and with a range of carbon/nitrogen ratios and carbon and nitrogen sources. The stability of the genes were analyzed with five statistical approaches, namely geNorm, NormFinder, BestKeeper, the ΔCt method, and RefFinder. Our results indicated that the selection of reference genes varied with sample sets. A combination of four reference genes (Cyt-c, ATP6, TEF1, and β-tubulin) were recommended for normalizing gene expression at different growth phases. GAPDH and Cyt-c were the appropriate reference genes under different induction conditions. ATP6 and TEF1 were most stable in fermentation media with various carbon/nitrogen ratios. In the fermentation media with various carbon or nitrogen sources, 18S rRNA and GAPDH were the references of choice. The present study represents the first validation analysis of reference genes in C. unicolor and serves as a foundation for its qPCR analysis.

Coaxial carbon plasma gun deposition of amorphous carbon films

NASA Technical Reports Server (NTRS)

Sater, D. M.; Gulino, D. A.; Rutledge, S. K.

1984-01-01

A unique plasma gun employing coaxial carbon electrodes was used in an attempt to deposit thin films of amorphous diamond-like carbon. A number of different structural, compositional, and electrical characterization techniques were used to characterize these films. These included scanning electron microscopy, scanning transmission electron microscopy, X ray diffraction and absorption, spectrographic analysis, energy dispersive spectroscopy, and selected area electron diffraction. Optical absorption and electrical resistivity measurements were also performed. The films were determined to be primarily amorphous, with poor adhesion to fused silica substrates. Many inclusions of particulates were found to be present as well. Analysis of these particulates revealed the presence of trace impurities, such as Fe and Cu, which were also found in the graphite electrode material. The electrodes were the source of these impurities. No evidence of diamond-like crystallite structure was found in any of the film samples. Details of the apparatus, experimental procedure, and film characteristics are presented.

Disentangling residence time and temperature sensitivity of microbial decomposition in a global soil carbon model

NASA Astrophysics Data System (ADS)

Exbrayat, J.-F.; Pitman, A. J.; Abramowitz, G.

2014-12-01

Recent studies have identified the first-order representation of microbial decomposition as a major source of uncertainty in simulations and projections of the terrestrial carbon balance. Here, we use a reduced complexity model representative of current state-of-the-art models of soil organic carbon decomposition. We undertake a systematic sensitivity analysis to disentangle the effect of the time-invariant baseline residence time (k) and the sensitivity of microbial decomposition to temperature (Q10) on soil carbon dynamics at regional and global scales. Our simulations produce a range in total soil carbon at equilibrium of ~ 592 to 2745 Pg C, which is similar to the ~ 561 to 2938 Pg C range in pre-industrial soil carbon in models used in the fifth phase of the Coupled Model Intercomparison Project (CMIP5). This range depends primarily on the value of k, although the impact of Q10 is not trivial at regional scales. As climate changes through the historical period, and into the future, k is primarily responsible for the magnitude of the response in soil carbon, whereas Q10 determines whether the soil remains a sink, or becomes a source in the future mostly by its effect on mid-latitude carbon balance. If we restrict our simulations to those simulating total soil carbon stocks consistent with observations of current stocks, the projected range in total soil carbon change is reduced by 42% for the historical simulations and 45% for the future projections. However, while this observation-based selection dismisses outliers, it does not increase confidence in the future sign of the soil carbon feedback. We conclude that despite this result, future estimates of soil carbon and how soil carbon responds to climate change should be more constrained by available data sets of carbon stocks.

Electrochemical process for the preparation of nitrogen fertilizers

DOEpatents

Aulich, Ted R [Grand Forks, ND; Olson, Edwin S [Grand Forks, ND; Jiang, Junhua [Grand Forks, ND

2012-04-10

The present invention provides methods and apparatus for the preparation of nitrogen fertilizers including ammonium nitrate, urea, urea-ammonium nitrate, and/or ammonia, at low temperature and pressure, preferably at ambient temperature and pressure, utilizing a source of carbon, a source of nitrogen, and/or a source of hydrogen or hydrogen equivalent. Implementing an electrolyte serving as ionic charge carrier, (1) ammonium nitrate is produced via the reduction of a nitrogen source at the cathode and the oxidation of a nitrogen source at the anode; (2) urea or its isomers are produced via the simultaneous cathodic reduction of a carbon source and a nitrogen source; (3) ammonia is produced via the reduction of nitrogen source at the cathode and the oxidation of a hydrogen source or a hydrogen equivalent such as carbon monoxide or a mixture of carbon monoxide and hydrogen at the anode; and (4) urea-ammonium nitrate is produced via the simultaneous cathodic reduction of a carbon source and a nitrogen source, and anodic oxidation of a nitrogen source. The electrolyte can be aqueous, non-aqueous, or solid.

What, Where, When, Who and How: Accounting for Biogenic CO2 Emissions Fluxes

NASA Astrophysics Data System (ADS)

Ohrel, S. B.

2013-12-01

The world is facing a future with a changing climate as well as increasing energy needs. Many countries, including the United States, are therefore considering an increased role of biomass in domestic energy portfolios. Accounting for emissions related to biomass production and use for energy is a complex issue: determining the extent to which biomass utilization can contribute to meeting energy needs while not contributing additional GHG emissions to the atmosphere necessitates further research. Such analysis becomes more challenging when evaluating biogenic feedstocks with long rotations (i.e., woody biomass). Detailed analysis and new accounting methods are needed in order to better assess and understand the potential implications of increased bioenergy utilization in the United States energy portfolio. In response to the EPA's 2011 Draft Accounting Framework for Biogenic CO2 Emissions from Stationary Sources, the Biogenic Carbon Emissions Panel (BCE Panel) appointed by the Science Advisory Board (2013) found that 'Carbon neutrality cannot be assumed for all biomass energy a priori. There are circumstances in which biomass is grown, harvested and combusted in a carbon neutral fashion but carbon neutrality is not an appropriate a priori assumption; it is a conclusion that should be reached only after considering a particular feedstock's production and consumption cycle. There is considerable heterogeneity in feedstock types, sources and production methods and thus net biogenic carbon emissions will vary considerably.' In that light, this study discusses the current policy discussion on biogenic feedstock use for energy in the United States. It then evaluates the question: how can we account for stationary source biogenic CO2 emissions while considering the biological cycling of carbon on the biogenic feedstock production landscape? The analysis discusses current biogenic feedstock usage in the U.S. and potential future impacts of increased biogenic feedstock production on U.S. land use, supply of non-energy commodities (e.g., timber, food crops), and related GHG emission fluxes. This paper first assesses current methods for accounting for land use sector biogenic CO2 emissions (i.e., IPCC approach). Based on the finding that no current methods exist for linking stationary source emissions with the land producing biogenic feedstocks, a unique method is needed that takes into consideration the biological cycling of carbon when accounting for biogenic emissions from energy use. The paper then describes the key technical and scientific considerations that should be taken in account, such as: the implications of baseline chosen; the important roles of temporal and spatial scales; emissions fluxes during feedstock production as well as transportation, storage and processing; the role of land use management and change, etc. It also discusses how these considerations can vary depending on feedstock type (e.g., long versus short rotation).

High Relative Abundance of Biofuel Sourced Ethanol in Precipitation in the US and Brazil Determined Using Compound Specific Stable Carbon Isotopes

NASA Astrophysics Data System (ADS)

Shimizu, M. S.; Felix, J. D. D.; Casas, M.; Avery, G. B., Jr.; Kieber, R. J.; Mead, R. N.; Willey, J. D.; Lane, C.

2017-12-01

Ethanol biofuel production and consumption have increased exponentially over the last two decades to help reduce greenhouse gas emissions. Currently, 85% of global ethanol production and consumption occurs in the US and Brazil. Increasing biofuel ethanol usage in these two countries enhances emissions of uncombusted ethanol to the atmosphere contributing to poor air quality. Although measurements of ethanol in the air and the precipitation reveal elevated ethanol concentrations in densely populated cities, other sources such as natural vegetation can contribute to emission to the atmosphere. Previous modeling studies indicated up to 12% of atmospheric ethanol is from anthropogenic emissions. Only one gas phase study in southern Florida attempted to constrain the two sources through direct isotopic measurements. The current study used a stable carbon isotope method to constrain sources of ethanol in rainwater from the US and Brazil. A method was developed using solid phase microextraction (SPME) with subsequent analysis by gas chromatography-combustion-isotope ratio mass spectrometry (GC-C-IRMS). Stable carbon isotope signatures (δ13C) of vehicle ethanol emission sources for both the US (-9.8‰) and Brazil (-12.7‰) represented C4 plants as feedstock (corn and sugarcane) for biofuel production. An isotope mixing model using biofuel from vehicles (C4 plants) and biogenic (C3 plants) end-members was implemented to estimate ethanol source apportionment in the rain. We found that stable carbon isotope ratio of ethanol in the rain ranged between -22.6‰ and -12.7‰. Our results suggest that the contribution of biofuel to atmospheric ethanol can be higher than previously estimated. As biofuel usage increasing globally, it is essential to determine the relative abundance of anthropogenic ethanol in other areas of the world.

Technical note: An inverse method to relate organic carbon reactivity to isotope composition from serial oxidation

NASA Astrophysics Data System (ADS)

Hemingway, Jordon D.; Rothman, Daniel H.; Rosengard, Sarah Z.; Galy, Valier V.

2017-11-01

Serial oxidation coupled with stable carbon and radiocarbon analysis of sequentially evolved CO2 is a promising method to characterize the relationship between organic carbon (OC) chemical composition, source, and residence time in the environment. However, observed decay profiles depend on experimental conditions and oxidation pathway. It is therefore necessary to properly assess serial oxidation kinetics before utilizing decay profiles as a measure of OC reactivity. We present a regularized inverse method to estimate the distribution of OC activation energy (E), a proxy for bond strength, using serial oxidation. Here, we apply this method to ramped temperature pyrolysis or oxidation (RPO) analysis but note that this approach is broadly applicable to any serial oxidation technique. RPO analysis directly compares thermal reactivity to isotope composition by determining the E range for OC decaying within each temperature interval over which CO2 is collected. By analyzing a decarbonated test sample at multiple masses and oven ramp rates, we show that OC decay during RPO analysis follows a superposition of parallel first-order kinetics and that resulting E distributions are independent of experimental conditions. We therefore propose the E distribution as a novel proxy to describe OC thermal reactivity and suggest that E vs. isotope relationships can provide new insight into the compositional controls on OC source and residence time.

Modeling Atmospheric CO2 Processes to Constrain the Missing Sink

NASA Technical Reports Server (NTRS)

Kawa, S. R.; Denning, A. S.; Erickson, D. J.; Collatz, J. C.; Pawson, S.

2005-01-01

We report on a NASA supported modeling effort to reduce uncertainty in carbon cycle processes that create the so-called missing sink of atmospheric CO2. Our overall objective is to improve characterization of CO2 source/sink processes globally with improved formulations for atmospheric transport, terrestrial uptake and release, biomass and fossil fuel burning, and observational data analysis. The motivation for this study follows from the perspective that progress in determining CO2 sources and sinks beyond the current state of the art will rely on utilization of more extensive and intensive CO2 and related observations including those from satellite remote sensing. The major components of this effort are: 1) Continued development of the chemistry and transport model using analyzed meteorological fields from the Goddard Global Modeling and Assimilation Office, with comparison to real time data in both forward and inverse modes; 2) An advanced biosphere model, constrained by remote sensing data, coupled to the global transport model to produce distributions of CO2 fluxes and concentrations that are consistent with actual meteorological variability; 3) Improved remote sensing estimates for biomass burning emission fluxes to better characterize interannual variability in the atmospheric CO2 budget and to better constrain the land use change source; 4) Evaluating the impact of temporally resolved fossil fuel emission distributions on atmospheric CO2 gradients and variability. 5) Testing the impact of existing and planned remote sensing data sources (e.g., AIRS, MODIS, OCO) on inference of CO2 sources and sinks, and use the model to help establish measurement requirements for future remote sensing instruments. The results will help to prepare for the use of OCO and other satellite data in a multi-disciplinary carbon data assimilation system for analysis and prediction of carbon cycle changes and carbodclimate interactions.

Distribution, Source and Fate of Dissolved Organic Matter in Shelf Seas

NASA Astrophysics Data System (ADS)

Carr, N.; Mahaffey, C.; Hopkins, J.; Sharples, J.; Williams, R. G.; Davis, C. E.

2016-02-01

Dissolved organic matter (DOM) is a complex array of molecules containing carbon (DOC), nitrogen (DON) and phosphorous (DOP), and represents the largest pool of organic matter in the marine environment. DOM in the sea originates from a variety of sources, including allochthonous inputs of terrestrial DOM from land via rivers, and autochthonous inputs through in-situ biotic processes that include phytoplankton exudation, grazing and cell lysis. Marine DOM is a substrate for bacterial growth and can act as a source of nutrients for autotrophs. However, a large component of DOM is biologically refractory. This pool is carbon-rich and nutrient-poor, and can transport and store its compositional elements over large areas and on long time scales. The role of DOM in the shelf seas is currently unclear, despite these regions acting as conduits between the land and open ocean, and also being highly productive ecosystems. Using samples collected across the Northwest European Shelf Sea, we studied the distribution, source, seasonality and potential fate of DOM using a combination of analytical tools, including analysis of amino acids, DOM absorbance spectra and excitation emission matrices, in conjunction with parallel factor analysis (PARAFAC). Strong cross shelf and seasonal gradients in DOM source and lability were found. We observed a strong seasonally dependent significant correlation between salinity and terrestrial DOM in the bottom mixed layer, an enrichment of DOM at the shelf edge in winter and a three-fold increase in fresh marine DOM coinciding with the timing of a spring bloom. Together, our findings illustrate the dynamic nature of DOM in shelf seas over a seasonal cycle and, highlight the potential for DOM to play a key role in the carbon cycle in these regions.

Author Correction: Implications of net energy-return-on-investment for a low-carbon energy transition

NASA Astrophysics Data System (ADS)

King, Lewis C.; van den Bergh, Jeroen C. J. M.

2018-04-01

In the version of this Analysis originally published, the value of the pessimistic EROI for the geothermal energy source in Table 1 was incorrectly given as 14:1; it should have read 9:1. This has now been corrected in all versions of the Analysis.

The Glycolytic Versatility of Bacteroides uniformis CECT 7771 and Its Genome Response to Oligo and Polysaccharides

PubMed Central

Benítez-Páez, Alfonso; Gómez del Pulgar, Eva M.; Sanz, Yolanda

2017-01-01

Bacteroides spp. are dominant components of the phylum Bacteroidetes in the gut microbiota and prosper in glycan enriched environments. However, knowledge of the machinery of specific species isolated from humans (like Bacteroides uniformis) contributing to the utilization of dietary and endogenous sources of glycans and their byproducts is limited. We have used the cutting-edge nanopore-based technology to sequence the genome of B. uniformis CECT 7771, a human symbiont with a proven pre-clinical efficacy on metabolic and immune dysfunctions in obesity animal models. We have also used massive sequencing approaches to distinguish the genome expression patterns in response to carbon sources of different complexity during growth. At genome-wide level, our analyses globally demonstrate that B. uniformis strains exhibit an expanded glycolytic capability when compared with other Bacteroides species. Moreover, by studying the growth and whole-genome expression of B. uniformis CECT 7771 in response to different carbon sources, we detected a differential growth fitness and expression patterns across the genome depending on the carbon source of the culture media. The dietary fibers used exerted different effects on B. uniformis CECT 7771 activating different molecular pathways and, therefore, allowing the production of different metabolite types with potential impact on gut health. The genome and transcriptome analysis of B. uniformis CECT 7771, in response to different carbon sources, shows its high versatility to utilize both dietary and endogenous glycans along with the production of potentially beneficial end products for both the bacterium and the host, pointing to a mechanistic basis of a mutualistic relationship. PMID:28971068

Non-stationary (13)C-metabolic flux ratio analysis.

PubMed

Hörl, Manuel; Schnidder, Julian; Sauer, Uwe; Zamboni, Nicola

2013-12-01

(13)C-metabolic flux analysis ((13)C-MFA) has become a key method for metabolic engineering and systems biology. In the most common methodology, fluxes are calculated by global isotopomer balancing and iterative fitting to stationary (13)C-labeling data. This approach requires a closed carbon balance, long-lasting metabolic steady state, and the detection of (13)C-patterns in a large number of metabolites. These restrictions mostly reduced the application of (13)C-MFA to the central carbon metabolism of well-studied model organisms grown in minimal media with a single carbon source. Here we introduce non-stationary (13)C-metabolic flux ratio analysis as a novel method for (13)C-MFA to allow estimating local, relative fluxes from ultra-short (13)C-labeling experiments and without the need for global isotopomer balancing. The approach relies on the acquisition of non-stationary (13)C-labeling data exclusively for metabolites in the proximity of a node of converging fluxes and a local parameter estimation with a system of ordinary differential equations. We developed a generalized workflow that takes into account reaction types and the availability of mass spectrometric data on molecular ions or fragments for data processing, modeling, parameter and error estimation. We demonstrated the approach by analyzing three key nodes of converging fluxes in central metabolism of Bacillus subtilis. We obtained flux estimates that are in agreement with published results obtained from steady state experiments, but reduced the duration of the necessary (13)C-labeling experiment to less than a minute. These results show that our strategy enables to formally estimate relative pathway fluxes on extremely short time scale, neglecting cellular carbon balancing. Hence this approach paves the road to targeted (13)C-MFA in dynamic systems with multiple carbon sources and towards rich media. © 2013 Wiley Periodicals, Inc.

Modeling rates of DOC degradation using DOM composition and hydroclimatic variables

NASA Astrophysics Data System (ADS)

Moody, C. S.; Worrall, F.

2017-05-01

The fluvial fluxes of dissolved organic carbon (DOC) from peatlands form an important part of that ecosystem's carbon cycle, contributing approximately 35% of the overall peatland carbon budget. The in-stream processes acting on the DOC, such as photodegradation and biodegradation, can lead to DOC loss and thus contribute CO2 to the atmosphere. The aim of this study was to understand what controls the rates of DOC degradation. Water samples from a headwater, peat-covered catchment, were collected over a 23 month period and analyzed for the DOC degradation rate and dissolved organic matter (DOM) composition in the context of hydroclimatic monitoring. Measures of DOM composition included 13C solid-state nuclear magnetic resonance spectroscopy, bomb calorimetry, and elemental analysis. Regression analysis showed that there was a significant role for the composition of the DOM in controlling degradation with degradation rates significantly increasing with the proportion of aldehyde and carboxylic acid functional groups but decreasing with the proportion of N-alkyl functional groups. The highest rates of DOC degradation occurred when aldehyde functionality was at its greatest and this occurred on the recession limb of storm hydrographs. Including this knowledge into models of fluvial carbon fate for an 818 km2 catchment gave an annual average DOC removal rate of 67% and 50% for total organic carbon, slightly lower than previously predicted. The compositional controls suggest that DOM is primarily being used as a ready energy source to the aquatic ecosystem rather than as a nutrient source.

Evaluation of cashew apple juice for surfactin production by Bacillus subtilis LAMI008.

PubMed

Ponte Rocha, Maria Valderez; Gomes Barreto, Raphaela V; Melo, Vânia Maria M; Barros Gonçalves, Luciana Rocha

2009-05-01

Bacillus subtilis LAMI008 strain isolated from the tank of Chlorination at the Wastewater Treatment Plant on Campus do Pici in Federal University of Ceará, Brazil has been screened for surfactin production in mineral medium containing clarified cashew apple juice (MM-CAJC). Results were compared with the ones obtained using mineral medium with glucose PA as carbon source. The influence on growth and surfactin production of culture medium supplementation with yeast extract was also studied. The substrate concentration analysis indicated that B. subtilis LAMI008 was able to degrade all carbon sources studied and produce biosurfactant. The highest reduction in surface tension was achieved with the fermentation of MM-CAJC, supplemented with yeast extract, which decreased from 58.95 +/- 0.10 to 38.10 +/- 0.81 dyn cm(-1). The biosurfactant produced was capable of emulsifying kerosene, achieving an emulsification index of 65%. Surfactin concentration of 3.5 mg L(-1) was obtained when MM-CAJC, supplemented with yeast extract, was used, thus indicating that it is feasible to produce surfactin from clarified cashew apple juice, a renewable and low-cost carbon source.

Lead chromate detected as a source of atmospheric Pb and Cr (VI) pollution.

PubMed

Lee, Pyeong-Koo; Yu, Soonyoung; Chang, Hye Jung; Cho, Hye Young; Kang, Min-Ju; Chae, Byung-Gon

2016-10-25

Spherical black carbon aggregates were frequently observed in dust dry deposition in Daejeon, Korea. They were tens of micrometers in diameter and presented a mixture of black carbon and several mineral phases. Transmission electron microscopy (TEM) observations with energy-dispersive X-ray spectroscopy (EDS) and selected area diffraction pattern (SADP) analyses confirmed that the aggregates were compact and included significant amounts of lead chromate (PbCrO 4 ). The compositions and morphologies of the nanosized lead chromate particles suggest that they probably originated from traffic paint used in roads and were combined as discrete minerals with black carbon. Based on Pb isotope analysis and air-mass backward trajectories, the dust in Daejeon received a considerable input of anthropogenic pollutants from heavily industrialized Chinese cities, which implies that long-range transported aerosols containing PbCrO 4 were a possible source of the lead and hexavalent chromium levels in East Asia. Lead chromate should be considered to be a source of global atmospheric Pb and Cr(VI) pollution, especially given its toxicity.

Reduction of nitrous oxide emissions from partial nitrification process by using innovative carbon source (mannitol).

PubMed

Zhang, Xinwen; Wang, Xiaoqing; Zhang, Jian; Huang, Xiaoyu; Wei, Dong; Lan, Wei; Hu, Zhen

2016-10-01

The purpose of this study was to evaluate the effect of mannitol as carbon source on nitrogen removal and nitrous oxide (N2O) emission during partial nitrification (PN) process. Laboratory-scale PN sequencing batch reactors (SBRs) were operated with mannitol and sodium acetate as carbon sources, respectively. Results showed that mannitol could remarkably reduce N2O-N emission by 41.03%, without influencing the removal efficiency of NH4(+)-N. However, it has a significant influence on nitrite accumulation ratio (NAR) and TN removal, which were 19.97% and 13.59% lower than that in PN with sodium acetate, respectively. Microbial analysis showed that the introduction of mannitol could increase the abundance of bacteria encoding nosZ genes. In addition, anti-oxidant enzymes (T-SOD, POD and CAT) activities were significantly reduced and the dehydrogenase activity had an obvious increase in mannitol system, indicating that mannitol could alleviate the inhibition of N2O reductase (N2OR) activities caused by high NO2(-)-N concentration. Copyright © 2016 Elsevier Ltd. All rights reserved.

Lead chromate detected as a source of atmospheric Pb and Cr (VI) pollution

NASA Astrophysics Data System (ADS)

Lee, Pyeong-Koo; Yu, Soonyoung; Chang, Hye Jung; Cho, Hye Young; Kang, Min-Ju; Chae, Byung-Gon

2016-10-01

Spherical black carbon aggregates were frequently observed in dust dry deposition in Daejeon, Korea. They were tens of micrometers in diameter and presented a mixture of black carbon and several mineral phases. Transmission electron microscopy (TEM) observations with energy-dispersive X-ray spectroscopy (EDS) and selected area diffraction pattern (SADP) analyses confirmed that the aggregates were compact and included significant amounts of lead chromate (PbCrO4). The compositions and morphologies of the nanosized lead chromate particles suggest that they probably originated from traffic paint used in roads and were combined as discrete minerals with black carbon. Based on Pb isotope analysis and air-mass backward trajectories, the dust in Daejeon received a considerable input of anthropogenic pollutants from heavily industrialized Chinese cities, which implies that long-range transported aerosols containing PbCrO4 were a possible source of the lead and hexavalent chromium levels in East Asia. Lead chromate should be considered to be a source of global atmospheric Pb and Cr(VI) pollution, especially given its toxicity.

Lead chromate detected as a source of atmospheric Pb and Cr (VI) pollution

PubMed Central

Lee, Pyeong-Koo; Yu, Soonyoung; Chang, Hye Jung; Cho, Hye Young; Kang, Min-Ju; Chae, Byung-Gon

2016-01-01

Spherical black carbon aggregates were frequently observed in dust dry deposition in Daejeon, Korea. They were tens of micrometers in diameter and presented a mixture of black carbon and several mineral phases. Transmission electron microscopy (TEM) observations with energy-dispersive X-ray spectroscopy (EDS) and selected area diffraction pattern (SADP) analyses confirmed that the aggregates were compact and included significant amounts of lead chromate (PbCrO4). The compositions and morphologies of the nanosized lead chromate particles suggest that they probably originated from traffic paint used in roads and were combined as discrete minerals with black carbon. Based on Pb isotope analysis and air-mass backward trajectories, the dust in Daejeon received a considerable input of anthropogenic pollutants from heavily industrialized Chinese cities, which implies that long-range transported aerosols containing PbCrO4 were a possible source of the lead and hexavalent chromium levels in East Asia. Lead chromate should be considered to be a source of global atmospheric Pb and Cr(VI) pollution, especially given its toxicity. PMID:27779222

Continuous fermentation of food waste leachate for the production of volatile fatty acids and potential as a denitrification carbon source.

PubMed

Kim, Hakchan; Kim, Jaai; Shin, Seung Gu; Hwang, Seokhwan; Lee, Changsoo

2016-05-01

This study investigated the simultaneous effects of hydraulic retention time (HRT) and pH on the continuous production of VFAs from food waste leachate using response surface analysis. The response surface approximations (R(2)=0.895, p<0.05) revealed that pH has a dominant effect on the specific VFA production (PTVFA) within the explored space (1-4-day HRT, pH 4.5-6.5). The estimated maximum PTVFA was 0.26g total VFAs/g CODf at 2.14-day HRT and pH 6.44, and the approximation was experimentally validated by running triplicate reactors under the estimated optimum conditions. The mixture of the filtrates recovered from these reactors was tested as a denitrification carbon source and demonstrated superior performance in terms of reaction rate and lag length relative to other chemicals, including acetate and methanol. The overall results provide helpful information for better design and control of continuous fermentation for producing waste-derived VFAs, an alternative carbon source for denitrification. Copyright © 2016 Elsevier Ltd. All rights reserved.

Uncovering the Minor Contribution of Land-Cover Change in Upland Forests to the Net Carbon Footprint of a Boreal Hydroelectric Reservoir.

PubMed

Dessureault, Pierre-Luc; Boucher, Jean-François; Tremblay, Pascal; Bouchard, Sylvie; Villeneuve, Claude

2015-07-01

Hydropower in boreal conditions is generally considered the energy source emitting the least greenhouse gas per kilowatt-hour during its life cycle. The purpose of this study was to assess the relative contribution of the land-use change on the modification of the carbon sinks and sources following the flooding of upland forested territories to create the Eastmain-1 hydroelectric reservoir in Quebec's boreal forest using Carbon Budget Model of the Canadian Forest Sector. Results suggest a carbon sink loss after 100 yr of 300,000 ± 100,000 Mg CO equivalents (COe). A wildfire sensitivity analysis revealed that the ecosystem would have acted as a carbon sink as long as <75% of the territory had burned over the 100-yr-long period. Our long-term net carbon flux estimate resulted in emissions of 4 ± 2 g COe kWh as a contribution to the carbon footprint calculation, one-eighth what was obtained in a recent study that used less precise and less sensitive estimates. Consequently, this study significantly reduces the reported net carbon footprint of this reservoir and reveals how negligible the relative contribution of the land-use change in upland forests to the total net carbon footprint of a hydroelectric reservoir in the boreal zone can be. Copyright © by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America, Inc.

Use of carbon monoxide and hydrogen by a bacteria-animal symbiosis from seagrass sediments

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kleiner, Manuel; Wentrup, Cecilia; Holler, Thomas

The gutless marine worm Olavius algarvensis lives in symbiosis with chemosynthetic bacteria that provide nutrition by fixing carbon dioxide (CO 2) into biomass using reduced sulfur compounds as energy sources. A recent metaproteomic analysis of the O. algarvensis symbiosis indicated that carbon monoxide (CO) and hydrogen (H 2) might also be used as energy sources. We provide direct evidence that the O. algarvensis symbiosis consumes CO and H 2. Single cell imaging using nanoscale secondary ion mass spectrometry revealed that one of the symbionts, the γ3-symbiont, uses the energy from CO oxidation to fix CO 2. Pore water analysis revealedmore » considerable in-situ concentrations of CO and H 2 in the O. algarvensis environment, Mediterranean seagrass sediments. Pore water H 2 concentrations (89-2147 nM) were up to two orders of magnitude higher than in seawater, and up to 36-fold higher than previously known from shallow-water marine sediments. Pore water CO concentrations (17-51 nM) were twice as high as in the overlying seawater (no literature data from other shallow-water sediments are available for comparison). Ex-situ incubation experiments showed that dead seagrass rhizomes produced large amounts of CO. Lastly, CO production from decaying plant material could thus be a significant energy source for microbial primary production in seagrass sediments.« less

Use of carbon monoxide and hydrogen by a bacteria-animal symbiosis from seagrass sediments

DOE PAGES

Kleiner, Manuel; Wentrup, Cecilia; Holler, Thomas; ...

2015-05-27

The gutless marine worm Olavius algarvensis lives in symbiosis with chemosynthetic bacteria that provide nutrition by fixing carbon dioxide (CO 2) into biomass using reduced sulfur compounds as energy sources. A recent metaproteomic analysis of the O. algarvensis symbiosis indicated that carbon monoxide (CO) and hydrogen (H 2) might also be used as energy sources. We provide direct evidence that the O. algarvensis symbiosis consumes CO and H 2. Single cell imaging using nanoscale secondary ion mass spectrometry revealed that one of the symbionts, the γ3-symbiont, uses the energy from CO oxidation to fix CO 2. Pore water analysis revealedmore » considerable in-situ concentrations of CO and H 2 in the O. algarvensis environment, Mediterranean seagrass sediments. Pore water H 2 concentrations (89-2147 nM) were up to two orders of magnitude higher than in seawater, and up to 36-fold higher than previously known from shallow-water marine sediments. Pore water CO concentrations (17-51 nM) were twice as high as in the overlying seawater (no literature data from other shallow-water sediments are available for comparison). Ex-situ incubation experiments showed that dead seagrass rhizomes produced large amounts of CO. Lastly, CO production from decaying plant material could thus be a significant energy source for microbial primary production in seagrass sediments.« less

Use of carbon monoxide and hydrogen by a bacteria–animal symbiosis from seagrass sediments

PubMed Central

Holler, Thomas; Lavik, Gaute; Harder, Jens; Lott, Christian; Littmann, Sten; Kuypers, Marcel M. M.; Dubilier, Nicole

2015-01-01

Summary The gutless marine worm O lavius algarvensis lives in symbiosis with chemosynthetic bacteria that provide nutrition by fixing carbon dioxide (CO 2) into biomass using reduced sulfur compounds as energy sources. A recent metaproteomic analysis of the O . algarvensis symbiosis indicated that carbon monoxide (CO) and hydrogen (H 2) might also be used as energy sources. We provide direct evidence that the O . algarvensis symbiosis consumes CO and H 2. Single cell imaging using nanoscale secondary ion mass spectrometry revealed that one of the symbionts, the γ3‐symbiont, uses the energy from CO oxidation to fix CO 2. Pore water analysis revealed considerable in‐situ concentrations of CO and H 2 in the O . algarvensis environment, Mediterranean seagrass sediments. Pore water H 2 concentrations (89–2147 nM) were up to two orders of magnitude higher than in seawater, and up to 36‐fold higher than previously known from shallow‐water marine sediments. Pore water CO concentrations (17–51 nM) were twice as high as in the overlying seawater (no literature data from other shallow‐water sediments are available for comparison). Ex‐situ incubation experiments showed that dead seagrass rhizomes produced large amounts of CO. CO production from decaying plant material could thus be a significant energy source for microbial primary production in seagrass sediments. PMID:26013766

Polyhydroxyalkanoates (PHA) production using wastewater as carbon source and activated sludge as microorganisms.

PubMed

Yan, S; Tyagi, R D; Surampalli, R Y

2006-01-01

Activated sludge from different full-scale wastewater treatment plants (municipal, pulp and paper industry, starch manufacturing and cheese manufacturing wastewaters) was used as a source of microorganisms to produce biodegradable plastics in shake flask experiments. Acetate, glucose and different wastewaters were used as carbon sources. Pulp and paper wastewater sludge was found to accumulate maximum concentration (43% of dry weight of suspended solids) of polyhydroxy alkanoates (PHA) with acetate as carbon source. Among the different wastewaters tested as a source of carbon, pulp and paper industry and starch industry wastewaters were found to be the best source of carbon while employing pulp and paper activated sludge for maximum accumulation of PHA. High concentration of volatile fatty acids in these wastewaters was the probable reason.

Electrochemical process for the preparation of nitrogen fertilizers

DOEpatents

Jiang, Junhua; Aulich, Ted R; Ignatchenko, Alexey V

2015-04-14

Methods and apparatus for the preparation of nitrogen fertilizers including ammonium nitrate, urea, urea-ammonium nitrate, and/or ammonia are disclosed. Embodiments include (1) ammonium nitrate produced via the reduction of a nitrogen source at the cathode and the oxidation of a nitrogen source at the anode; (2) urea or its isomers produced via the simultaneous cathodic reduction of a carbon source and a nitrogen source: (3) ammonia produced via the reduction of nitrogen source at the cathode and the oxidation of a hydrogen source or a hydrogen equivalent such as carbon monoxide or a mixture of carbon monoxide and hydrogen at the anode; and (4) urea-ammonium nitrate produced via the simultaneous cathodic reduction of a carbon source and a nitrogen source, and anodic oxidation of a nitrogen source.

A national look at carbon capture and storage-National carbon sequestration database and geographical information system (NatCarb)

USGS Publications Warehouse

Carr, T.R.; Iqbal, A.; Callaghan, N.; ,; Look, K.; Saving, S.; Nelson, K.

2009-01-01

The US Department of Energy's Regional Carbon Sequestration Partnerships (RCSPs) are responsible for generating geospatial data for the maps displayed in the Carbon Sequestration Atlas of the United States and Canada. Key geospatial data (carbon sources, potential storage sites, transportation, land use, etc.) are required for the Atlas, and for efficient implementation of carbon sequestration on a national and regional scale. The National Carbon Sequestration Database and Geographical Information System (NatCarb) is a relational database and geographic information system (GIS) that integrates carbon storage data generated and maintained by the RCSPs and various other sources. The purpose of NatCarb is to provide a national view of the carbon capture and storage potential in the U.S. and Canada. The digital spatial database allows users to estimate the amount of CO2 emitted by sources (such as power plants, refineries and other fossil-fuel-consuming industries) in relation to geologic formations that can provide safe, secure storage sites over long periods of time. The NatCarb project is working to provide all stakeholders with improved online tools for the display and analysis of CO2 carbon capture and storage data. NatCarb is organizing and enhancing the critical information about CO2 sources and developing the technology needed to access, query, model, analyze, display, and distribute natural resource data related to carbon management. Data are generated, maintained and enhanced locally at the RCSP level, or at specialized data warehouses, and assembled, accessed, and analyzed in real-time through a single geoportal. NatCarb is a functional demonstration of distributed data-management systems that cross the boundaries between institutions and geographic areas. It forms the first step toward a functioning National Carbon Cyberinfrastructure (NCCI). NatCarb provides access to first-order information to evaluate the costs, economic potential and societal issues of CO2 capture and storage, including public perception and regulatory aspects. NatCarb online access has been modified to address the broad needs of a spectrum of users. NatCarb includes not only GIS and database query tools for high-end user, but simplified display for the general public using readily available web tools such as Google Earth???and Google Maps???. Not only is NatCarb connected to all the RCSPs, but data are also pulled from public servers including the U.S. Geological Survey-EROS Data Center and from the Geography Network. Data for major CO2 sources have been obtained from U.S. Environmental Protection Agency (EPA) databases, and data on major coal basins and coalbed methane wells were obtained from the Energy Information Administration (EIA). ?? 2009 Elsevier Ltd. All rights reserved.

Source apportionment of ambient PM10 and PM2.5 in Haikou, China

NASA Astrophysics Data System (ADS)

Fang, Xiaozhen; Bi, Xiaohui; Xu, Hong; Wu, Jianhui; Zhang, Yufen; Feng, Yinchang

2017-07-01

In order to identify the sources of PM10 and PM2.5 in Haikou, 60 ambient air samples were collected in winter and spring, respectively. Fifteen elements (Na, Mg, Al, Si, K, Ca, Ti, V, Cr, Mn, Fe, Ni, Cu, Zn and Pb), water-soluble ions (SO42 - and NO3-), and organic carbon (OC) and elemental carbon (EC) were analyzed. It was clear that the concentration of particulate matter was higher in winter than in spring. The value of PM2.5/PM10 was > 0.6. Moreover, the proportions of TC, ions, Na, Al, Si and Ca were more high in PM10 and PM2.5. The SOC concentration was estimated by the minimum OC/EC ratio method, and deducted from particulate matter compositions when running CMB model. According to the results of CMB model, the resuspended dust (17.5-35.0%), vehicle exhaust (14.9-23.6%) and secondary particulates (20.4-28.8%) were the major source categories of ambient particulate matter. Additionally, sea salt also had partial contribution (3-8%). And back trajectory analysis results showed that particulate matter was greatly affected by regional sources in winter, while less affected in spring. So particulate matter was not only affected by local sources, but also affected by sea salt and regional sources in coastal cities. Further research could focuses on establishing the actual secondary particles profiles and identifying the local and regional sources of PM at once by one model or analysis method.

Disentangling residence time and temperature sensitivity of microbial decomposition in a global soil carbon model

NASA Astrophysics Data System (ADS)

Exbrayat, J.-F.; Pitman, A. J.; Abramowitz, G.

2014-03-01

Recent studies have identified the first-order parameterization of microbial decomposition as a major source of uncertainty in simulations and projections of the terrestrial carbon balance. Here, we use a reduced complexity model representative of the current state-of-the-art parameterization of soil organic carbon decomposition. We undertake a systematic sensitivity analysis to disentangle the effect of the time-invariant baseline residence time (k) and the sensitvity of microbial decomposition to temperature (Q10) on soil carbon dynamics at regional and global scales. Our simulations produce a range in total soil carbon at equilibrium of ~ 592 to 2745 Pg C which is similar to the ~ 561 to 2938 Pg C range in pre-industrial soil carbon in models used in the fifth phase of the Coupled Model Intercomparison Project. This range depends primarily on the value of k, although the impact of Q10 is not trivial at regional scales. As climate changes through the historical period, and into the future, k is primarily responsible for the magnitude of the response in soil carbon, whereas Q10 determines whether the soil remains a sink, or becomes a source in the future mostly by its effect on mid-latitudes carbon balance. If we restrict our simulations to those simulating total soil carbon stocks consistent with observations of current stocks, the projected range in total soil carbon change is reduced by 42% for the historical simulations and 45% for the future projections. However, while this observation-based selection dismisses outliers it does not increase confidence in the future sign of the soil carbon feedback. We conclude that despite this result, future estimates of soil carbon, and how soil carbon responds to climate change should be constrained by available observational data sets.

Measurement of carbon capture efficiency and stored carbon leakage

DOEpatents

Keeling, Ralph F.; Dubey, Manvendra K.

2013-01-29

Data representative of a measured carbon dioxide (CO.sub.2) concentration and of a measured oxygen (O.sub.2) concentration at a measurement location can be used to determine whether the measured carbon dioxide concentration at the measurement location is elevated relative to a baseline carbon dioxide concentration due to escape of carbon dioxide from a source associated with a carbon capture and storage process. Optionally, the data can be used to quantify a carbon dioxide concentration increase at the first location that is attributable to escape of carbon dioxide from the source and to calculate a rate of escape of carbon dioxide from the source by executing a model of gas-phase transport using at least the first carbon dioxide concentration increase. Related systems, methods, and articles of manufacture are also described.

Energy markets in the 1990's and beyond: A comparison of energy intensity in the United States and Japan

NASA Astrophysics Data System (ADS)

McDonald, S. C.

1989-10-01

A comparative analysis is provided of energy intensity in the U.S. and Japan. According to aggregate International Energy Agency (IEA) data, the U.S. has one of the most energy-intensive economies while Japan has one of the least. Energy-intensity measures are constructed and examined which that are more detailed than aggregate measures used by the IEA to see if they can better explain these differences. The year chosen for this analysis is 1985. The issue of energy intensity may become particularly critical if scientific findings on global climate change and greenhouse emissions lead to negotiations on restricting carbon emissions. The burning of fossil fuels is the most important anthropogenic source of carbon emissions. As shown by this analysis, developing a consistent and fair set of goals for each country for carbon emissions, which are interlocked with energy intensity, may be a difficult task.

Ozone-induced changes in natural organic matter (NOM) structure

USGS Publications Warehouse

Westerhoff, P.; Debroux, J.; Aiken, G.; Amy, G.

1999-01-01

Hydrophobic organic acids (combined humic and fulvic acids), obtained from an Antarctic Lake with predominantly microbially derived organic carbon sources and two US fiver systems with terrestrial organic carbon sources, were ozonated. Several analyses, including 13C-NMR, UV absorbance, fluorescence, hydrophobic/transphilic classification, and potentiometric titrations, were performed before and after ozonation. Ozonation reduced aromatic carbon content, selectively reducing phenolic carbon content. Ozonation of the samples resulted in increased aliphatic, carboxyl, plus acetal and ketal anomeric carbon content and shifted towards less hydrophobic compounds.Hydrophobic organic acids (combined humic and fulvic acids), obtained from an Antarctic Lake with predominantly microbially derived organic carbon sources and two US river systems with terrestrial organic carbon sources, were ozonated. Several analyses, including 13C-NMR, UV absorbance, fluorescence, hydrophobic/transphilic classification, and potentiometric titrations, were performed before and after ozonation. Ozonation reduced aromatic carbon content, selectively reducing phenolic carbon content. Ozonation of the samples resulted in increased aliphatic, carboxyl, plus acetal and ketal anomeric carbon content and shifted towards less hydrophobic compounds.

Sublimation rates of carbon monoxide and carbon dioxide from comet nuclei at large distances from the Sun

NASA Technical Reports Server (NTRS)

Sekanina, Zdenek

1991-01-01

One of the more attractive among the plausible scenarios for the major emission event recently observed on Comet Halley at a heliocentric distance of 14.3 AU is activation of a source of ejecta driven by an icy substance much more volatile than water. As prerequisite for the forthcoming detailed analysis of the imaging observations of this event, a simple model is proposed that yields the sublimation rate versus time at any location on the surface of a rotating cometary nucleus for two candidate ices: carbon monoxide and carbon dioxide. The model's variable parameters are the comet's heliocentric distance r and the Sun's instantaneous zenith angle z.

pyhector: A Python interface for the simple climate model Hector

DOE PAGES

Willner, Sven N.; Hartin, Corinne; Gieseke, Robert

2017-04-01

Here, pyhector is a Python interface for the simple climate model Hector (Hartin et al. 2015) developed in C++. Simple climate models like Hector can, for instance, be used in the analysis of scenarios within integrated assessment models like GCAM1, in the emulation of complex climate models, and in uncertainty analyses. Hector is an open-source, object oriented, simple global climate carbon cycle model. Its carbon cycle consists of a one pool atmosphere, three terrestrial pools which can be broken down into finer biomes or regions, and four carbon pools in the ocean component. The terrestrial carbon cycle includes primary productionmore » and respiration fluxes. The ocean carbon cycle circulates carbon via a simplified thermohaline circulation, calculating air-sea fluxes as well as the marine carbonate system. The model input is time series of greenhouse gas emissions; as example scenarios for these the Pyhector package contains the Representative Concentration Pathways (RCPs)2.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Willner, Sven N.; Hartin, Corinne; Gieseke, Robert

Here, pyhector is a Python interface for the simple climate model Hector (Hartin et al. 2015) developed in C++. Simple climate models like Hector can, for instance, be used in the analysis of scenarios within integrated assessment models like GCAM1, in the emulation of complex climate models, and in uncertainty analyses. Hector is an open-source, object oriented, simple global climate carbon cycle model. Its carbon cycle consists of a one pool atmosphere, three terrestrial pools which can be broken down into finer biomes or regions, and four carbon pools in the ocean component. The terrestrial carbon cycle includes primary productionmore » and respiration fluxes. The ocean carbon cycle circulates carbon via a simplified thermohaline circulation, calculating air-sea fluxes as well as the marine carbonate system. The model input is time series of greenhouse gas emissions; as example scenarios for these the Pyhector package contains the Representative Concentration Pathways (RCPs)2.« less

Social Network and Content Analysis of the North American Carbon Program as a Scientific Community of Practice

NASA Technical Reports Server (NTRS)

Brown, Molly E.; Ihli, Monica; Hendrick, Oscar; Delgado-Arias, Sabrina; Escobar, Vanessa M.; Griffith, Peter

2015-01-01

The North American Carbon Program (NACP) was formed to further the scientific understanding of sources, sinks, and stocks of carbon in Earth's environment. Carbon cycle science integrates multidisciplinary research, providing decision-support information for managing climate and carbon-related change across multiple sectors of society. This investigation uses the conceptual framework of com-munities of practice (CoP) to explore the role that the NACP has played in connecting researchers into a carbon cycle knowledge network, and in enabling them to conduct physical science that includes ideas from social science. A CoP describes the communities formed when people consistently engage in shared communication and activities toward a common passion or learning goal. We apply the CoP model by using keyword analysis of abstracts from scientific publications to analyze the research outputs of the NACP in terms of its knowledge domain. We also construct a co-authorship network from the publications of core NACP members, describe the structure and social pathways within the community. Results of the content analysis indicate that the NACP community of practice has substantially expanded its research on human and social impacts on the carbon cycle, contributing to a better understanding of how human and physical processes interact with one another. Results of the co-authorship social network analysis demonstrate that the NACP has formed a tightly connected community with many social pathways through which knowledge may flow, and that it has also expanded its network of institutions involved in carbon cycle research over the past seven years.

Using liquid waste streams as the moisture source during the hydrothermal carbonization of municipal solid wastes.

PubMed

Li, Liang; Hale, McKenzie; Olsen, Petra; Berge, Nicole D

2014-11-01

Hydrothermal carbonization (HTC) is a thermal conversion process that can be an environmentally beneficial approach for the conversion of municipal solid wastes to value-added products. The influence of using activated sludge and landfill leachate as initial moisture sources during the carbonization of paper, food waste and yard waste over time at 250°C was evaluated. Results from batch experiments indicate that the use of activated sludge and landfill leachate are acceptable alternative supplemental liquid sources, ultimately imparting minimal impact on carbonization product characteristics and yields. Regression results indicate that the initial carbon content of the feedstock is more influential than any of the characteristics of the initial liquid source and is statistically significant when describing the relationship associated with all evaluated carbonization products. Initial liquid-phase characteristics are only statistically significant when describing the solids energy content and the mass of carbon in the gas-phase. The use of these alternative liquid sources has the potential to greatly increase the sustainability of the carbonization process. A life cycle assessment is required to quantify the benefits associated with using these alternative liquid sources. Copyright © 2014 Elsevier Ltd. All rights reserved.

Oxygen-rich hierarchical porous carbon made from pomelo peel fiber as electrode material for supercapacitor

NASA Astrophysics Data System (ADS)

Li, Jing; Liu, Wenlong; Xiao, Dan; Wang, Xinhui

2017-09-01

Oxygen-rich hierarchical porous carbon has been fabricated using pomelo peel fiber as a carbon source via an improved KOH activation method. The morphology and chemical composition of the obtained carbon materials were characterized by X-ray diffraction (XRD), X-ray photoelectron spectra (XPS), electron microscopy (EM), Raman spectra and elemental analysis. The unique porous structure with abundant oxygen functional groups is favorable to capacitive behavior, and the as-prepared carbon material exhibits high specific capacitance of 222.6 F g-1 at 0.5 A g-1 in 6 M KOH and superior stability over 5000 cycles. This work not only describes a simple way to prepare high-performance carbon material from the discarded pomelo peel, but also provides a strategy for its disposal issue and contributes to the environmental improvement.

In situ synthesis of ultra-fine, porous, tin oxide-carbon nanocomposites via a molten salt method for lithium-ion batteries

NASA Astrophysics Data System (ADS)

Liu, Bin; Guo, Zai Ping; Du, Guodong; Nuli, Yanna; Hassan, Mohd Faiz; Jia, Dianzeng

Ultra-fine, porous, tin oxide-carbon (SnO 2/C) nanocomposites are fabricated by a molten salt method at 300 °C, and malic acid is decomposed as the carbon source. In situ synthesis is favourable for the combination of carbon and SnO 2. The structure and morphology are confirmed by X-ray diffraction analysis, specific surface-area measurements, and transmission electron microscopy (TEM). Examination of TEM images reveals that the SnO 2 nanoparticles are embedded in the carbon matrix, with sizes between 2 and 5 nm. The electrochemical measurements show that the nanocomposite delivers a high capacity with good capacity retention as an anode material for lithium-ion batteries, due to the combination of the ultra-fine porous structure and the carbon component.

What's New in the Site Characterization Tool Box: Molecular Biological Tools to Identify Microorganisms that Degrade Contaminants and Contaminant-Specific Isotope Analysis to Identify Sources and Document Degradation

EPA Science Inventory

In the past, it was necessary to conduct intensive sampling and monitoring of concentrations of contaminants in ground water to trace plumes back to their true source. Now it is possible to determine the ratio of stable isotopes of carbon, hydrogen or chlorine in the contaminan...

The nonlinear oil-water two-phase flow behavior for a horizontal well in triple media carbonate reservoir

NASA Astrophysics Data System (ADS)

Wang, Yong; Tao, Zhengwu; Chen, Liang; Ma, Xin

2017-10-01

Carbonate reservoir is one of the important reservoirs in the world. Because of the characteristics of carbonate reservoir, horizontal well has become a key technology for efficiently developing carbonate reservoir. Establishing corresponding mathematical models and analyzing transient pressure behaviors of this type of well-reservoir configuration can provide a better understanding of fluid flow patterns in formation as well as estimations of important parameters. A mathematical model for a oil-water two-phase flow horizontal well in triple media carbonate reservoir by conceptualizing vugs as spherical shapes are presented in this article. A semi-analytical solution is obtained in the Laplace domain using source function theory, Laplace transformation, and superposition principle. Analysis of transient pressure responses indicates that seven characteristic flow periods of horizontal well in triple media carbonate reservoir can be identified. Parametric analysis shows that water saturation of matrix, vug and fracture system, horizontal section length, and horizontal well position can significantly influence the transient pressure responses of horizontal well in triple media carbonate reservoir. The model presented in this article can be applied to obtain important parameters pertinent to reservoir by type curve matching.

Shipboard monitoring of non-CO2 greenhouse gases in Asia and Oceania using commercially cargo vessels

NASA Astrophysics Data System (ADS)

Nara, H.; Tanimoto, H.; Mukai, H.; Nojiri, Y.; Tohjima, Y.; Machida, T.; Hashimoto, S.

2011-12-01

The National Institute for Environmental Studies (NIES) has been performing a long-term program for monitoring trace gases of atmospheric importance over the Pacific Ocean since 1995. The NIES Voluntary Observing Ships (NIES-VOS) program currently makes use of commercial cargo vessels because they operate regularly over fixed routes for long periods and sail over a wide area between various ports (e.g., between Japan and the United States, between Japan and Australia/New Zealand, and between Japan and southeast Asia). This program allows systematic and continuous measurements of non-CO2 greenhouse gases, providing long-term datasets for background air over the Pacific Ocean and regionally polluted air around east Asia. We observe both long-lived greenhouse gases (e.g., carbon dioxide) and short-lived air pollutants (e.g., tropospheric ozone, carbon monoxide) on a continuous basis. Flask samples are collected for later laboratory analysis of carbon dioxide, methane, nitrous oxide, and carbon monoxide by using gas chromatographic techniques. In addition, we recently installed cavity ringdown spectrometers for high-resolution measurement of methane and carbon dioxide to capture their highly variable features in regionally polluted air around southeast Asia (e.g., Hong Kong, Thailand, Singapore, Malaysia, Indonesia and Philippine), which is now thought to be a large source due to expanding socioeconomic activities as well as biomass burnings. Contrasting the Japan-Australia/New Zealand and Japan-southeast Asia cruises revealed regional characteristics of sources and sinks of these atmospherically important species, suggesting the existence of additional sources for methane, nitrous oxides, and carbon monoxide in this tropical Asian region.

Determining sources of water and contaminants to wells in a carbonate aquifer near Martinsburg, Blair County, Pennsylvania, by use of geochemical indicators, analysis of anthropogenic contaminants, and simulation of ground-water flow

USGS Publications Warehouse

Lindsey, Bruce D.; Koch, Michele L.

2004-01-01

Water supply for the Borough of Martinsburg, Pa., is from two well fields (Wineland and Hershberger) completed in carbonate-bedrock aquifers in the Morrison Cove Valley. Water supply is plentiful; however, waters with high concentrations of nitrate are a concern. This report describes the sources of water and contaminants to the supply wells. A review of previous investigations was used to establish the aquifer framework and estimate aquifer hydraulic properties. Aquifer framework and simulation of ground-water flow in a 25-square-mile area using the MODFLOW model helped to further constrain aquifer hydraulic properties and identify water-source areas in the zone of contribution of ground water to the well fields. Flow simulation identified potential contaminant-source areas. Data on contaminants and geochemical characteristics of ground water at the well fields were compared to the results of flow simulation. The Woodbury Anticline controls the aquifer framework near the well fields and four carbonate-bedrock formations contain the primary aquifers. Three carbonate-bedrock aquifers of Ordovician age overlie the Gatesburg aquifer of Cambrian age on the flanks of the anticline. Fracture, not conduit, permeability was determined to be the dominant water-bearing characteristic of the bedrock. The horizontal hydraulic conductivity of the Gatesburg aquifer is about 36 feet per day. The other carbonate aquifers (Nittany/Stonehenge, Bellefonte/Axemann, and Coburn through Loysburg aquifers) overlying and flanking the Gatesburg aquifer have horizontal hydraulic conductivities of about 1 foot per day. Regional directions of ground-water flow are toward the major streams with Clover Creek as the major discharge point for ground water in the east. Ground-water flow to the well fields is anisotropic with a 5:1 preferential horizontal direction along strike of the axial fold of the anticline. Thus, the zone of contribution of ground water to the well fields is elongate in a north-south direction along the anticline axis, with the majority of the flow to the well fields originating from the south. Human activity in the areal extent of the zone of contribution to the well fields was the source of contaminants. The areal extent of the zone of contribution included both urban areas in the Borough and a large amount of agricultural land. By relating results of flow simulation, natural geochemistry, and analyses of anthropogenic (human-made) contaminants, the source areas for water and contaminants were determined with more confidence than by using only flow simulation. Analysis of natural geochemistry identified water sources from both limestone and dolomite aquifers. Geochemistry results also indicated fractures, not conduits, were the dominant source of water from aquifers; however, quantitative source identification was not possible. Chemical ratios of chloride and bromide were useful to show that all samples of ground water had sources with chemical contributions from land surface. Nitrogen isotope ratio analysis indicated animal manure as the possible primary source of nitrate in most ground water. Some of the nitrate in ground water had chemical fertilizer as a source. At the Wineland well field, chemical fertilizer was likely the source of nitrate. The nitrate in water from the Hershberger well field was from a mixture of fertilizer and animal-manure sources. Human sewage was ruled out as a major source of nitrate in water from the municipal wells by results showing 1) wastewater compounds in sewage were rarely detected and 2) a mass-balance calculation indicating the small contribution of nitrogen that could be attributed to septic systems.

The carbon functional group budget of a peatland

NASA Astrophysics Data System (ADS)

Moody, Catherine; Worrall, Fred; Clay, Gareth; Apperley, David

2016-04-01

Organic matter samples were taken from each organic matter reservoir and fluvial flux found in a peatland and analysed by elemental analysis for carbon, hydrogen, nitrogen and oxygen content, and by 13C solid state nuclear magnetic resonance (NMR) for functional group composition. The samples analysed were: aboveground, belowground, heather, mosses and sedges, litter layer, four different depths from a peat core, and monthly samples of fluvial particulate and dissolved organic matter. All organic matter samples were taken from a 100% peat catchment within Moor House National Nature Reserve in the North Pennines, UK. The proportion of carbon atoms from each of the eight carbon functional groups (C-alkyl, N-alkyl/methoxyl C, O-alkyl, O2-alkyl/acetal C, aromatic/unsaturated C, phenolic C, aldehyde/ketone C and amide/carboxyl C) from each type of organic matter were combined with an existing carbon budget from the same site, to give a functional group carbon budget. The budget results show that the ecosystem is accumulating N-alkyl/methoxyl C, O-alkyl, O2-alkyl/acetal C and phenolic C groups, but losing C-alkyl, aromatic/unsaturated C, amide/carboxyl C and aldehyde/ketone C. Comparing the functional group compositions between the sampled organic matter pools shows that DOM arises from two distinct sources; from the peat itself and from a vegetation source.

Dissolved organic carbon in the precipitation of Seoul, Korea: Implications for global wet depositional flux of fossil-fuel derived organic carbon

NASA Astrophysics Data System (ADS)

Yan, Ge; Kim, Guebuem

2012-11-01

Precipitation was sampled in Seoul over a one-year period from 2009 to 2010 to investigate the sources and fluxes of atmospheric dissolved organic carbon (DOC). The concentrations of DOC varied from 15 μM to 780 μM, with a volume-weighted average of 94 μM. On the basis of correlation analysis using the commonly acknowledged tracers, such as vanadium, the combustion of fossil-fuels was recognized to be the dominant source. With the aid of air mass backward trajectory analyses, we concluded that the primary fraction of DOC in our precipitation samples originated locally in Korea, albeit the frequent long-range transport from eastern and northeastern China might contribute substantially. In light of the relatively invariant organic carbon to sulfur mass ratios in precipitation over Seoul and other urban regions around the world, the global magnitude of wet depositional DOC originating from fossil-fuels was calculated to be 36 ± 10 Tg C yr-1. Our study further underscores the potentially significant environmental impacts that might be brought about by this anthropogenically derived component of organic carbon in the atmosphere.

C:N and δ13C indicate aquatic carbon source for methanogenesis in peatland lakes

NASA Astrophysics Data System (ADS)

Horruitiner, C. D.; Palace, M. W.; Wik, M.; Johnson, J. E.; Varner, R.

2017-12-01

Emissions from high latitude lakes are a large source of atmospheric methane (CH4) and are thought to be controlled primarily by temperature and the availability of labile organic carbon (C). The sediment loading of organic carbon from aquatic versus terrestrial sources is not well understood, nor is its effect on methane dynamics or how this will change with a warming Arctic. In the summer of 2017, we studied the C loading of aquatic vegetation and its effects on methane dynamics across a system of lakes within Stordalen Mire, a thawing permafrost peatland, using an underwater camera to characterize bottom vegetation. Preliminary C:N elemental ratios were performed on both aquatic and terrestrial vegetation, indicating an aquatic C:N signature in sediments and little diagenetic alteration of C:N ratios with decomposition. Inclusion of δ13C of aquatic vegetation and sediment further validate the hypothesis of a highly aquatic signature in sediment carbon, meaning organic C in these lakes is predominantly autochthonous. Previous work indicates that the isotopic signature of the CH4 produced is within the range of hydrogenotrophic methanogenesis, via the reduction of CO2, as opposed to the fermentation of acetate. Pending acetate concentration analysis will validate this as the predominant methanogenic pathway. We suggest that in-situ aquatic vegetation can fuel much of the CH4 production in high latitude shallow lakes, a C source that may respond positively in a warming climate with CO2 fertilization and longer ice-free seasons.

Carbon Source Requirements for Exopolysaccharide Production by Lactobacillus casei CG11 and Partial Structure Analysis of the Polymer

PubMed Central

Cerning, J.; Renard, C. M. G. C.; Thibault, J. F.; Bouillanne, C.; Landon, M.; Desmazeaud, M.; Topisirovic, L.

1994-01-01

Exopolysaccharide production by Lactobacillus casei CG11 was studied in basal minimum medium containing various carbon sources (galactose, glucose, lactose, sucrose, maltose, melibiose) at concentrations of 2, 5, 10, and 20 g/liter. L. casei CG11 produced exopolysaccharides in basal minimum medium containing each of the sugars tested; lactose and galactose were the poorest carbon sources, and glucose was by far the most efficient carbon source. Sugar concentrations had a marked effect on polymer yield. Plasmid-cured Muc- derivatives grew better in the presence of glucose and attained slightly higher populations than the wild-type strain. The values obtained with lactose were considerably lower for both growth and exopolysaccharide yield. The level of specific polymer production per cell obtained with glucose was distinctively lower for Muc- derivatives than for the Muc+ strain. The polymer produced by L. casei CG11 in the presence of glucose was different from that formed in the presence of lactose. The polysaccharide produced by L. casei CG11 in basal minimum medium containing 20 g of glucose per liter had an intrinsic viscosity of 1.13 dl/g. It was rich in glucose (76%), which was present mostly as 2- or 3-linked residues along with some 2,3 doubly substituted glucose units, and in rhamnose (21%), which was present as 2-linked or terminal rhamnose; traces of mannose and galactose were also present. PMID:16349427

Synthesis of hydrogen-carbon clathrate material and hydrogen evolution therefrom at moderate temperatures and pressures

DOEpatents

Lueking, Angela [State College, PA; Narayanan, Deepa [Redmond, WA

2011-03-08

A process for making a hydrogenated carbon material is provided which includes forming a mixture of a carbon source, particularly a carbonaceous material, and a hydrogen source. The mixture is reacted under reaction conditions such that hydrogen is generated and/or released from the hydrogen source, an amorphous diamond-like carbon is formed, and at least a portion of the generated and/or released hydrogen associates with the amorphous diamond-like carbon, thereby forming a hydrogenated carbon material. A hydrogenated carbon material including a hydrogen carbon clathrate is characterized by evolution of molecular hydrogen at room temperature at atmospheric pressure in particular embodiments of methods and compositions according to the present invention.

A Novel Airborne Carbon Isotope Analyzer for Methane and Carbon Dioxide Source Fingerprinting

NASA Astrophysics Data System (ADS)

Berman, E. S.; Huang, Y. W.; Owano, T. G.; Leifer, I.

2014-12-01

Recent field studies on major sources of the important greenhouse gas methane (CH4) indicate significant underestimation of methane release from fossil fuel industrial (FFI) and animal husbandry sources, among others. In addition, uncertainties still exist with respect to carbon dioxide (CO2) measurements, especially source fingerprinting. CO2 isotopic analysis provides a valuable in situ measurement approach to fingerprint CH4 and CO2as associated with combustion sources, leakage from geologic reservoirs, or biogenic sources. As a result, these measurements can characterize strong combustion source plumes, such as power plant emissions, and discriminate these emissions from other sources. As part of the COMEX (CO2 and MEthane eXperiment) campaign, a novel CO2 isotopic analyzer was installed and collected data aboard the CIRPAS Twin Otter aircraft. Developing methods to derive CH4 and CO2 budgets from remote sensing data is the goal of the summer 2014 COMEX campaign, which combines hyperspectral imaging (HSI) and non-imaging spectroscopy (NIS) with in situ airborne and surface data. COMEX leverages the synergy between high spatial resolution HSI and moderate spatial resolution NIS. The carbon dioxide isotope analyzer developed by Los Gatos Research (LGR) uses LGR's patented Off-Axis ICOS (Integrated Cavity Output Spectroscopy) technology and incorporates proprietary internal thermal control for high sensitivity and optimal instrument stability. This analyzer measures CO2 concentration as well as δ13C, δ18O, and δ17O from CO2 at natural abundance (100-3000 ppm). The laboratory accuracy is ±1.2 ppm (1σ) in CO2 from 370-1000 ppm, with a long-term (1000 s) precision of ±0.012 ppm. The long-term precision for both δ13C and δ18O is 0.04 ‰, and for δ17O is 0.06 ‰. The analyzer was field-tested as part of the COWGAS campaign, a pre-cursor campaign to COMEX in March 2014, where it successfully discriminated plumes related to combustion processes associated with dairy activities (tractor exhaust) from plumes and sources in air enriched in methane and ammonia from bovine activities including waste maintenance. Methodology, laboratory data, field data from COWGAS, and field data from the COMEX campaign acquired by LGR's carbon isotope analyzer as well as other COMEX analyzers are presented.

Carbon Isotope Composition of Mysids at a Terrestrial-Marine Ecotone, Clayoquot Sound, British Columbia, Canada

NASA Astrophysics Data System (ADS)

Mulkins, L. M.; Jelinski, D. E.; Karagatzides, J. D.; Carr, A.

2002-04-01

The relative contribution of summertime terrestrial versus marine carbon to an estuary on coastal British Columbia, Canada was explored using stable carbon isotopic (δ 13C values) analysis of mysid crustaceans (Malacostraca: Peracarida: Mysidacea). We hypothesized that landscape linkages between the forested upland and adjacent inshore marine waters, via river, groundwater and overland flows, may influence carbon content and metabolism in the coastal zone. We sampled 14 stations spatially distributed in a grid and found δ 13C compositions of mysids ranged from -15·2 to -18·4‰. There was, however, no obvious spatial distribution of δ 13C values relative to the estuarine gradient in Cow Bay. Heavy tidal mixing is suggested to disperse marine and terrestrial carbon throughout the entire bay. From a temporal perspective however, mysid δ 13C signatures became enriched over the sampling period (mid-July to mid-August), which is representative of a stronger marine influence. This may arise because mysids are exposed to greater marine-derived carbon sources later in the summer, a decrease in freshwater input (and hence terrestrial carbon), changes in phytoplankton or macrophyte community structure, or that mysids preferentially feed on marine food sources. Overall, the recorded isotopic values are characteristic of marine organic carbon signatures suggesting that in summer, despite the proximity to shore, little or no terrestrial carbon penetrates the food web at the trophic level of mysids. This notwithstanding we believe there is a strong need for additional study of carbon flows at the marine-terrestrial interface, especially for disturbed watersheds.

Nanophase Carbonates on Mars: Formation, Detection, and Implications

NASA Technical Reports Server (NTRS)

Archer, P. D.; Lauer, H. V.; Ming, D. W.; Niles, P. B.; Morris, R. V.; Rampe, E. B.; Sutter, B.

2014-01-01

Despite having an atmosphere composed primarily of CO2 and evidence for abundant water in the past, carbonate minerals have only been discovered on Mars in small amounts in martian dust, in soils in the Northern Plains, and in outcrops of limited spatial extent. Recently, carbonates have been identified as the possible source of CO2 released during thermal analysis of material from an aeolian deposit named Rocknest and drilled sample from the sheepbed mudstone, both samples analyzed by the Mars Science Laboratory (MSL) in Gale Crater. Both the Phoenix lander and MSL carry thermal analysis instruments, the Thermal and Evolved Gas Analyzer (TEGA) on Phoenix and the Sample Analysis at Mars (SAM) instrument on MSL. While thermal analysis does not provide definitive mineralogy, it can detect volatile-bearing minerals present at very low abundance and the temperature profiles of evolved gases can reveal physical properties of the sample. For example, the decomposition temperature of volatilebearing minerals depends heavily on the particle size of the mineral.

CO2 deserts: implications of existing CO2 supply limitations for carbon management.

PubMed

Middleton, Richard S; Clarens, Andres F; Liu, Xiaowei; Bielicki, Jeffrey M; Levine, Jonathan S

2014-10-07

Efforts to mitigate the impacts of climate change will require deep reductions in anthropogenic CO2 emissions on the scale of gigatonnes per year. CO2 capture and utilization and/or storage technologies are a class of approaches that can substantially reduce CO2 emissions. Even though examples of this approach, such as CO2-enhanced oil recovery, are already being practiced on a scale >0.05 Gt/year, little attention has been focused on the supply of CO2 for these projects. Here, facility-scale data newly collected by the U.S. Environmental Protection Agency was processed to produce the first comprehensive map of CO2 sources from industrial sectors currently supplying CO2 in the United States. Collectively these sources produce 0.16 Gt/year, but the data reveal the presence of large areas without access to CO2 at an industrially relevant scale (>25 kt/year). Even though some facilities with the capability to capture CO2 are not doing so and in some regions pipeline networks are being built to link CO2 sources and sinks, much of the country exists in "CO2 deserts". A life cycle analysis of the sources reveals that the predominant source of CO2, dedicated wells, has the largest carbon footprint further confounding prospects for rational carbon management strategies.

Induction of L-phenylalanine ammonia-lyase during utilization of phenylalanine as a carbon or nitrogen source in Rhodotorula glutinis

DOE Office of Scientific and Technical Information (OSTI.GOV)

Marusich, W.C.; Jensen, R.A.; Zamir, L.O.

Rhodotorula glutinis is a convenient source of L-phenylalanine ammonia-lyase, an enzyme that is useful as a biochemical reagent in the assay of L-phenylalanine. There have been previous descriptions of induced lyase production in complex medium where induction occurs late in exponential growth, suggesting a role in secondary metabolism such as is the case in higher plants. A higher specific activity of L-phenylalanine ammonia-lyase (sixfold higher than in complex medium) can be obtained during midexponential growth in a defined medium containing L-phenylalanine as the sole source of carbon. L-phenylalanine will also induce lyase synthesis during exponential growth in minimal medium inmore » which L-phenylalanine is the sole source of nitrogen. The appearance of lyase in complex medium supplemented with L-phenylalanine is probably triggered fortuitously by exhaustion late in growth of a prime source of nitrogen. In this study, R. glutinis appeared to express a single lyase enzyme, regardless of whether induction was nitrogen signaled or carbon signaled. Thin-layer chromatographic analysis of ether extracts prepared fom cultures induced with doubly labeled (U-/sup 14/C; ring-4-/sup 3/H) L-phenylalanine provided evidence of a catabolic sequence containing cinnamic acid, benzoic acid, and 4-hydroxybenzoic acid as degradative intermediates. 3,4-Dihydroxybenzoic acid was not identified as a catabolic intermediate.« less

Induction of L-phenylalanine ammonia-lyase during utilization of phenylalanine as a carbon or nitrogen source in Rhodotorula glutinis.

PubMed Central

Marusich, W C; Jensen, R A; Zamir, L O

1981-01-01

Rhodotorula glutinis is a convenient source of L-phenylalanine ammonia-lyase, an enzyme that is useful as a biochemical reagent in the assay of L-phenylalanine. There have been previous descriptions of induced lyase production in complex medium where induction occurs late in exponential growth, suggesting a role in secondary metabolism such as is the case in higher plants. A higher specific activity of L-phenylalanine ammonia-lyase (sixfold higher than a complex medium) can be obtained during midexponential growth in a defined medium containing L-phenylalanine as the sole source of carbon. L-Phenylalanine will also induce lyase synthesis during exponential growth in minimal in which L-phenylalanine is the sole source of nitrogen. The appearance of lyase in complex medium supplemented with L-phenylalanine is probably triggered fortuitously by exhaustion late in growth of a prime source of nitrogen. In this study, R. glutinis appeared to express a single lyase enzyme, regardless of whether induction was nitrogen signaled or carbon signaled. Thin-layer chromatographic analysis of ether extracts prepared from cultures induced with doubly labeled (U-14C; ring-4-3H) L-phenylalanine provided evidence of a catabolic sequence containing cinnamic acid, benzoic acid, and 4-hydroxybenzoic acid as degradative intermediates. 3,4-Dihydroxybenzoic acid was not identified as a catabolic intermediate. PMID:7195398

Method for the production of dicarboxylic acids

DOEpatents

Nghiem, N.P.; Donnelly, M.; Millard, C.S.; Stols, L.

1999-02-09

The present invention is an economical fermentation method for the production of carboxylic acids comprising the steps of (a) inoculating a medium having a carbon source with a carboxylic acid-producing organism; (b) incubating the carboxylic acid-producing organism in an aerobic atmosphere to promote rapid growth of the organism thereby increasing the biomass of the organism; (c) controllably releasing oxygen to maintain the aerobic atmosphere; (d) controllably feeding the organism having increased biomass with a solution containing the carbon source to maintain the concentration of the carbon source within the medium of about 0.5 g/l up to about 1 g/l; (e) depriving the aerobic atmosphere of oxygen to produce an anaerobic atmosphere to cause the organism to undergo anaerobic metabolism; (f) controllably feeding the organism having increased biomass a solution containing the carbon source to maintain the concentration of the carbon source within the medium of {>=}1 g/l; and (g) converting the carbon source to carboxylic acids using the anaerobic metabolism of the organism. 7 figs.

Method for the production of dicarboxylic acids

DOEpatents

Nghiem, Nhuan Phu; Donnelly, Mark; Millard, Cynthia S.; Stols, Lucy

1999-01-01

The present invention is an economical fermentation method for the production of carboxylic acids comprising the steps of a) inoculating a medium having a carbon source with a carboxylic acid-producing organism; b) incubating the carboxylic acid-producing organism in an aerobic atmosphere to promote rapid growth of the organism thereby increasing the biomass of the organism; c) controllably releasing oxygen to maintain the aerobic atmosphere; d) controllably feeding the organism having increased biomass with a solution containing the carbon source to maintain the concentration of the carbon source within the medium of about 0.5 g/L up to about 1 g/L; e) depriving the aerobic atmosphere of oxygen to produce an anaerobic atmosphere to cause the organism to undergo anaerobic metabolism; f) controllably feeding the organism having increased biomass a solution containing the carbon source to maintain the concentration of the carbon source within the medium of .gtoreq.1 g/L; and g) converting the carbon source to carboxylic acids using the anaerobic metabolism of the organism.

Long-term measurements (2010-2014) of carbonaceous aerosol and carbon monoxide at the Zotino Tall Tower Observatory (ZOTTO) in central Siberia

NASA Astrophysics Data System (ADS)

Mikhailov, Eugene F.; Mironova, Svetlana; Mironov, Gregory; Vlasenko, Sergey; Panov, Alexey; Chi, Xuguang; Walter, David; Carbone, Samara; Artaxo, Paulo; Heimann, Martin; Lavric, Jost; Pöschl, Ulrich; Andreae, Meinrat O.

2017-12-01

We present long-term (5-year) measurements of particulate matter with an upper diameter limit of ˜ 10 µm (PM10), elemental carbon (EC), organic carbon (OC), and water-soluble organic carbon (WSOC) in aerosol filter samples collected at the Zotino Tall Tower Observatory in the middle-taiga subzone (Siberia). The data are complemented with carbon monoxide (CO) measurements. Air mass back trajectory analysis and satellite image analysis were used to characterise potential source regions and the transport pathway of haze plumes. Polluted and background periods were selected using a non-parametric statistical approach and analysed separately. In addition, near-pristine air masses were selected based on their EC concentrations being below the detection limit of our thermal-optical instrument. Over the entire sampling campaign, 75 and 48 % of air masses in winter and in summer, respectively, and 42 % in spring and fall are classified as polluted. The observed background concentrations of CO and EC showed a sine-like behaviour with a period of 365 ± 4 days, mostly due to different degrees of dilution and the removal of polluted air masses arriving at the Zotino Tall Tower Observatory (ZOTTO) from remote sources. Our analysis of the near-pristine conditions shows that the longest periods with clean air masses were observed in summer, with a frequency of 17 %, while in wintertime only 1 % can be classified as a clean. Against a background of low concentrations of CO, EC, and OC in the near-pristine summertime, it was possible to identify pollution plumes that most likely came from crude-oil production sites located in the oil-rich regions of Western Siberia. Overall, our analysis indicates that most of the time the Siberian region is impacted by atmospheric pollution arising from biomass burning and anthropogenic emissions. A relatively clean atmosphere can be observed mainly in summer, when polluted species are removed by precipitation and the aerosol burden returns to near-pristine conditions.

Genome-Scale Reconstruction and Analysis of the Metabolic Network in the Hyperthermophilic Archaeon Sulfolobus Solfataricus

PubMed Central

Ulas, Thomas; Riemer, S. Alexander; Zaparty, Melanie; Siebers, Bettina; Schomburg, Dietmar

2012-01-01

We describe the reconstruction of a genome-scale metabolic model of the crenarchaeon Sulfolobus solfataricus, a hyperthermoacidophilic microorganism. It grows in terrestrial volcanic hot springs with growth occurring at pH 2–4 (optimum 3.5) and a temperature of 75–80°C (optimum 80°C). The genome of Sulfolobus solfataricus P2 contains 2,992,245 bp on a single circular chromosome and encodes 2,977 proteins and a number of RNAs. The network comprises 718 metabolic and 58 transport/exchange reactions and 705 unique metabolites, based on the annotated genome and available biochemical data. Using the model in conjunction with constraint-based methods, we simulated the metabolic fluxes induced by different environmental and genetic conditions. The predictions were compared to experimental measurements and phenotypes of S. solfataricus. Furthermore, the performance of the network for 35 different carbon sources known for S. solfataricus from the literature was simulated. Comparing the growth on different carbon sources revealed that glycerol is the carbon source with the highest biomass flux per imported carbon atom (75% higher than glucose). Experimental data was also used to fit the model to phenotypic observations. In addition to the commonly known heterotrophic growth of S. solfataricus, the crenarchaeon is also able to grow autotrophically using the hydroxypropionate-hydroxybutyrate cycle for bicarbonate fixation. We integrated this pathway into our model and compared bicarbonate fixation with growth on glucose as sole carbon source. Finally, we tested the robustness of the metabolism with respect to gene deletions using the method of Minimization of Metabolic Adjustment (MOMA), which predicted that 18% of all possible single gene deletions would be lethal for the organism. PMID:22952675

Isolation and characterization of Sulfurospirillum carboxydovorans sp. nov., a new microaerophilic carbon monoxide oxidizing epsilon Proteobacterium.

PubMed

Jensen, Anders; Finster, Kai

2005-05-01

A new microaerophilic, Gram-negative, motile, 2-3 microm long and 0.3 microm wide, vibrioid to spirillum-shaped, CO oxidizing bacterium, designated strain MV, isolated from marine sediment (The North Sea) is described. Strain MV was able to couple the oxidation of CO to the reduction of elemental sulphur, DMSO and thiosulphate. Growth occurred with up to 100% (v/v) CO in the headspace. Acetate was needed as carbon source. No growth on CO was observed with nitrate and selenate as electron acceptor. Sulphite, elemental sulphur, DMSO, thiosulphate, nitrate, nitrite, perchloroethylene, arsenate and selenate were used as electron acceptors with pyruvate as energy and carbon source. Microaerophilic growth was observed. In non-agitated cultures growth occurred at atmospheric oxygen concentrations in the headspace. Hydrogen (with acetate as carbon source), formate (with acetate as carbon source), pyruvate, lactate, succinate, fumarate, malate alpha-ketoglutaric acid, aspartate and yeast extract (1% (w/v)) supported growth with nitrate as electron acceptor. Fumarate and malate were fermented. Vitamins were not required for growth. The strain was cytochrome C oxidase and catalase positive. The DNA mol G+C content was 30.5%. 16S rRNA gene sequence comparison showed that strain MV grouped within the genus Sulfurospirillum with Sulfurospirillum arcachonense (sequence similarity 98.3%) as closest relative. The relative DNA-DNA relatedness between strain MV and S. arcachonense was 33.1%. Based on a detailed phenotypic and phylogenetic analysis, inclusion of strain MV in the genus Sulfurospirillum as a well separated new species is proposed. As species name we propose Sulfurospirillum carboxydovorans. The type strain is strain MV (ATCC BAA-937 = DSM 16295, GenBank accession number: AY740528).

Black carbon emissions from Russian diesel sources. Case study of Murmansk

DOE PAGES

Evans, M.; Kholod, N.; Malyshev, V.; ...

2015-07-27

Black carbon (BC) is a potent pollutant because of its effects on climate change, ecosystems and human health. Black carbon has a particularly pronounced impact as a climate forcer in the Arctic because of its effect on snow albedo and cloud formation. We have estimated BC emissions from diesel sources in the Murmansk Region and Murmansk City, the largest city in the world above the Arctic Circle. In this study we developed a detailed inventory of diesel sources including on-road vehicles, off-road transport (mining, locomotives, construction and agriculture), ships and diesel generators. For on-road transport, we conducted several surveys tomore » understand the vehicle fleet and driving patterns, and, for all sources, we also relied on publicly available local data sets and analysis. We calculated that BC emissions in the Murmansk Region were 0.40 Gg in 2012. The mining industry is the largest source of BC emissions in the region, emitting 69 % of all BC emissions because of its large diesel consumption and absence of emissions controls. On-road vehicles are the second largest source, emitting about 13 % of emissions. Old heavy duty trucks are the major source of emissions. Emission controls on new vehicles limit total emissions from on-road transportation. Vehicle traffic and fleet surveys show that many of the older cars on the registry are lightly or never used. We also estimated that total BC emissions from diesel sources in Russia were 50.8 Gg in 2010, and on-road transport contributed 49 % of diesel BC emissions. Agricultural machinery is also a significant source Russia-wide, in part because of the lack of controls on off-road vehicles.« less

Black carbon emissions from Russian diesel sources. Case study of Murmansk

DOE Office of Scientific and Technical Information (OSTI.GOV)

Evans, M.; Kholod, N.; Malyshev, V.

Black carbon (BC) is a potent pollutant because of its effects on climate change, ecosystems and human health. Black carbon has a particularly pronounced impact as a climate forcer in the Arctic because of its effect on snow albedo and cloud formation. We have estimated BC emissions from diesel sources in the Murmansk Region and Murmansk City, the largest city in the world above the Arctic Circle. In this study we developed a detailed inventory of diesel sources including on-road vehicles, off-road transport (mining, locomotives, construction and agriculture), ships and diesel generators. For on-road transport, we conducted several surveys tomore » understand the vehicle fleet and driving patterns, and, for all sources, we also relied on publicly available local data sets and analysis. We calculated that BC emissions in the Murmansk Region were 0.40 Gg in 2012. The mining industry is the largest source of BC emissions in the region, emitting 69 % of all BC emissions because of its large diesel consumption and absence of emissions controls. On-road vehicles are the second largest source, emitting about 13 % of emissions. Old heavy duty trucks are the major source of emissions. Emission controls on new vehicles limit total emissions from on-road transportation. Vehicle traffic and fleet surveys show that many of the older cars on the registry are lightly or never used. We also estimated that total BC emissions from diesel sources in Russia were 50.8 Gg in 2010, and on-road transport contributed 49 % of diesel BC emissions. Agricultural machinery is also a significant source Russia-wide, in part because of the lack of controls on off-road vehicles.« less

Adsorption of volatile organic compounds by pecan shell- and almond shell-based granular activated carbons.

PubMed

Bansode, R R; Losso, J N; Marshall, W E; Rao, R M; Portier, R J

2003-11-01

The objective of this research was to determine the effectiveness of using pecan and almond shell-based granular activated carbons (GACs) in the adsorption of volatile organic compounds (VOCs) of health concern and known toxic compounds (such as bromo-dichloromethane, benzene, carbon tetrachloride, 1,1,1-trichloromethane, chloroform, and 1,1-dichloromethane) compared to the adsorption efficiency of commercially used carbons (such as Filtrasorb 200, Calgon GRC-20, and Waterlinks 206C AW) in simulated test medium. The pecan shell-based GACs were activated using steam, carbon dioxide or phosphoric acid. An almond shell-based GAC was activated with phosphoric acid. Our results indicated that steam- or carbon dioxide-activated pecan shell carbons were superior in total VOC adsorption to phosphoric acid-activated pecan shell or almond shell carbons, inferring that the method of activation selected for the preparation of activated carbons affected the adsorption of VOCs and hence are factors to be considered in any adsorption process. The steam-activated, pecan shell carbon adsorbed more total VOCs than the other experimental carbons and had an adsorption profile similar to the two coconut shell-based commercial carbons, but had greater adsorption than the coal-based commercial carbon. All the carbons studied adsorbed benzene more effectively than the other organics. Pecan shell, steam-activated and acid-activated GACs showed higher adsorption of 1,1,1-trichloroethane than the other carbons studied. Multivariate analysis was conducted to group experimental carbons and commercial carbons based on their physical, chemical, and adsorptive properties. The results of the analysis conclude that steam-activated and acid-activated pecan shell carbons clustered together with coal-based and coconut shell-based commercial carbons, thus inferring that these experimental carbons could potentially be used as alternative sources for VOC adsorption in an aqueous environment.

Chemical composition, structural properties, and source apportionment of organic macromolecules in atmospheric PM10 in a coastal city of Southeast China.

PubMed

Chen, Yanting; Du, Wenjiao; Chen, Jinsheng; Hong, Youwei; Zhao, Jinping; Xu, Lingling; Xiao, Hang

2017-02-01

Particulate matter (PM 10 ) associated with the fractions of organic macromolecules, including humic acid (HA), kerogen + black carbon (KB), and black carbon (BC), was determined during summer and winter at urban and suburban sites in a coastal city of southeast China. The organic macromolecules were characterized by elemental analysis (EA), scanning electron microscopy (SEM), and Fourier transform infrared spectroscopy (FTIR), and their sources were identified by using stable carbon/nitrogen isotope (δ 13 C/δ 15 N) and the Hybrid Single Particle Lagrangian Integrated Trajectory (HYSPLIT) Model. The results showed that HA, kerogen (K), and BC accounted for the range of 3.89 to 4.55 % in PM 10 , while they were the dominant fractions of total organic carbon (TOC), ranging from 64.70 to 84.99 %. SEM analysis indicated that BC particles were porous/nonporous and consisted of spherical and non-spherical (i.e., cylindrical and elongate) structures. The FTIR spectra of HA, KB, and BC exhibited similar functional groups, but the difference of various sites and seasons was observed. HA in PM 10 contained a higher fraction of aliphatic structures, such as long-chain fatty and carbohydrates with a carboxylic extremity. The C/N ratio, SEM, and δ 13 C/δ 15 N values provided reliable indicators of the sources of HA, K, and BC in PM 10 . The results suggested that HA and K majorly originated from terrestrial plants, and BC came from the mixture of combustion of terrestrial plants, fossil fuel, and charcoal. The air masses in winter originated from Mongolia (4 %), the northern area of China (48 %), and northern adjacent cities (48 %), suggesting the influence of anthropogenic sources through long-range transport, while the air masses for the summer period came from South China Sea (34 %) and Western Pacific Sea (66 %), representing clean marine air masses with low concentrations of organic macromolecules.

The composition and character of DOM from an upland peat catchment - sources, roles and fate

NASA Astrophysics Data System (ADS)

Worrall, F.; Moody, C.; Clay, G.; Boothroyd, I.; Burt, T. P.

2017-12-01

The fluvial fluxes of dissolved organic carbon (DOC) from peatlands form an important part of that ecosystem's carbon cycle, contributing approximately 35% of the overall peatland carbon budget. The source, role and fate of this component of the carbon cycle was explored for a peat covered catchment in the north east of England with dissolved organic matter (DOM) being sampled from both a first-order peat-hosted stream and soil water at two depths within the peat profile. All DOM samples were analysed within the context of analysing the particulate organic matter (POM) from the catchment; the peat profile; and biomass. All samples were analysed using: elemental analysis (C, H, N, O, P and S); bomb calorimetry; thermogravimetric analysis (TGA); 13C solid state NMR; and S isotopes. Furthermore, the degradation of fresh DOC was examined over periods of 70 hours every month for 23 months. The analysis has shown that: DOM is highly oxidised compared to all other organic in the ecosystem and DOM did not exist until [C]/[O] < 1.44. The DOM was dominantly the product of lignin breakdown and not the processing of proteins or carbohydrates, i.e. it was not an intermediate of oxidation to CO2. DOM could only be sourced from high in the peat profile at most above 41 cm depth. Thermodynamic inhibition shows that only DOM from the surface layers could be reactive in the catotelmic layers of the peat. There was a significant role for the composition of the DOM in controlling degradation with degradation rates significantly increasing with the proportion of aldehyde and carboxylic acid functional groups but decreasing with the proportion of N-alkyl functional groups. The study meant that is was possible to consider the behaviour of DOM in terms of its thermodynamic properties (DH, DS & DG) for both formation and reaction.

Morphology and topography study of graphene synthesized from plant oil

NASA Astrophysics Data System (ADS)

Robaiah, M.; Rusop, M.; Abdullah, S.; Khusaimi, Z.; Azhan, H.; Laila, M. O.; Salifairus, M. J.; Asli, N. A.

2018-05-01

The graphene is material consists of bonded atom carbon atoms in sheet form one atom thick. The different types of carbon sources which are refined corn oil, palm oil and waste cooking palm oil were used as carbon feedstock to supply carbon atom for synthesizing graphene on the nickel substrate by thermal chemical vapour deposition. The substrate and carbon sources were placed in double zone furnaces. The carbon sources and the substrate were heated at 300 °C and 900 °C respectively. The both furnaces were switched off after synthesis time for cooling process finish. The formation of the graphene on the Ni surface appears due to segregation and precipitation of a high amount of carbon from the source material during the cooling process. FESEM, AFM, UV-VIS Spectroscopy and Raman Spectroscopy were used to characterize and synthesized graphene.

Semi-continuous measurement and characteristics of water-soluble organic carbon and ions of PM2.5 aerosol with PILS-TOC-IC in Baengnyeong Island

NASA Astrophysics Data System (ADS)

Kang, S.; Kim, K.; Park, G.; Ban, J.; Park, D.; Bae, M. S.; Shin, H. J.; Lee, M.; Seo, Y.; Choi, J.; Jung, D.; Seo, S.; Lee, T.; Kim, D. S.

2016-12-01

Aerosols have an important effect from scattering and absorbing the solar energy and indirectly by acting as cloud condensation nuclei and also some of the effects of aerosols are reduction in visibility, deterioration of human health, and deposition of pollutants to ecosystems. In various experimental results were showed that organic compounds have an important fraction from 10 to 70% of the total aerosol mass. Organic carbon contains water-soluble organic carbon (WSOC) and water insoluble organic carbon. WSOC are involved in the most unknown liquid-phase chemistry of wet aerosol and clouds. It is also worked as cloud condensation nuclei (CCN). Formation of secondary organic aerosol by chemical reaction of hydrocarbon compounds is a source of main pollution of WSOC compounds. Study of pollution source of WSOC is important method for creation process of secondary organic aerosol that completely has not studied.Analysis of WSOC is important and need to real-time measurement system for definition of chemical cause and sources. In this study, Particle-into-liquid sampler (PILS) coupled with total organic carbon (TOC) analyser and ion chromatography (PILS-TOC-IC), was used for semi-continuous measurement of WSOC and ionic compounds of PM2.5 during April-June 2016 at Baengnyeong Island Atmospheric Research Center, operated by the Korea National Institute of Environmental Research (NIER). PILS-TOC-IC can provide chemical information about real-time changes from ions composition and concentrations of WSOC and ionic compounds.

The Effects of Different External Carbon Sources on Nitrous Oxide Emissions during Denitrification in Biological Nutrient Removal Processes

NASA Astrophysics Data System (ADS)

Hu, Xiang; Zhang, Jing; Hou, Hongxun

2018-01-01

The aim of this study was to investigate the effects of two different external carbon sources (acetate and ethanol) on the nitrous oxide (N2O) emissions during denitrification in biological nutrient removal processes. Results showed that external carbon source significantly influenced N2O emissions during the denitrification process. When acetate served as the external carbon source, 0.49 mg N/L and 0.85 mg N/L of N2O was produced during the denitrificaiton processes in anoxic and anaerobic/anoxic experiments, giving a ratio of N2O-N production to TN removal of 2.37% and 4.96%, respectively. Compared with acetate, the amount of N2O production is negligible when ethanol used as external carbon addition. This suggested that ethanol is a potential alternative external carbon source for acetate from the point of view of N2O emissions.

Effect of geological carbon sources on eddy covariance measurements: analysis and possible correction approaches

NASA Astrophysics Data System (ADS)

Papale, D.; Rey, A.; Belelli-Marchesini, L.; Etiope, G.; Pegoraro, E.

2013-12-01

A recent set of studies carried out in the SE of Spain highlighted the need to consider geological carbon sources when estimating the net ecosystem carbon balance (NECB) of terrestrial ecosystems located in areas potentially affected by geofluid circulation. In this study we present the mechanisms and propose a new methodology using physical parameters of the atmospheric boundary layer to quantify the CO2 coming from deep origin. To test our approach, we compare NECB estimates with seasonal patterns of soil CO2 efflux and vegetation activity measured by satellite images (NDVI) over two-year period at this site (2007/2008). According with the eddy covariance measurements the alpha grass ecosystem was a net carbon source (93.7 and 145.0 g C m-2, for the years 2007 and 2008, respectively) particularly as a result of large amounts of carbon released over the dry period. This relevant CO2 emission (reaching up to 15 umol m-2 s-1) was however not related to ecosystem activities as confirmed by measurements of soil CO2 efflux using chambers (ca. 0.5 umol m-2 s-1) and plant productivity that was minimal during this period. A simple correction based on a linear relationship between NECB and wind speed for different stability conditions and wind sectors has been used to estimate the geological flux FGEO and subtracted it from the NECB to obtain the biological flux FBIO. We then partitioned FBIO into gross primary productivity and ecosystem respiration and proved that, after removing FGEO, ecosystem and soil respiration followed similar temporal patterns. The annual contribution of the geological component to NECB was 49.6 and 46.7 % for the year 2007 and 2008, respectively. Therefore, potential contribution of geological carbon sources should be tested and quantified in those ecosystems located in areas with potential natural emission of geologic gases to the surface. References: REY A., BELELLI MARCHESINI L., WERE A., SERRANO ORTIZ P., ETIOPE G., PAPALE D, DOMINGO F., PEGORARO E. (2012). Wind as a main driver of the net ecosystem carbon balance of a semiarid Mediterranean steppe in the South East of Spain. GLOBAL CHANGE BIOLOGY, vol. 18, p. 539-554 REY A., ETIOPE G., BELELLI-MARCHESINI L., PAPALE D, VALENTINI R. (2012). Geologic carbon sources may confound ecosystem carbon balance estimates: Evidence from a semiarid steppe in the southeast of Spain. JOURNAL OF GEOPHYSICAL RESEARCH. BIOGEOSCIENCES, vol. 117 REY A., BELELLI-MARCHESINI L., ETIOPE G., PAPALE D., CANFORA E., VALENTINI R., PEGORARO E. (2013) Partitioning the net ecosystem carbon balance of a semiarid steppe into biological and geological carbon components. BIOGEOCHEMISTRY, (in review)

Toward Sustainable Amino Acid Production.

PubMed

Usuda, Yoshihiro; Hara, Yoshihiko; Kojima, Hiroyuki

Because the global amino acid production industry has been growing steadily and is expected to grow even more in the future, efficient production by fermentation is of great importance from economic and sustainability viewpoints. Many systems biology technologies, such as genome breeding, omics analysis, metabolic flux analysis, and metabolic simulation, have been employed for the improvement of amino acid-producing strains of bacteria. Synthetic biological approaches have recently been applied to strain development. It is also important to use sustainable carbon sources, such as glycerol or pyrolytic sugars from cellulosic biomass, instead of conventional carbon sources, such as glucose or sucrose, which can be used as food. Furthermore, reduction of sub-raw substrates has been shown to lead to reduction of environmental burdens and cost. Recently, a new fermentation system for glutamate production under acidic pH was developed to decrease the amount of one sub-raw material, ammonium, for maintenance of culture pH. At the same time, the utilization of fermentation coproducts, such as cells, ammonium sulfate, and fermentation broth, is a useful approach to decrease waste. In this chapter, further perspectives for future amino acid fermentation from one-carbon compounds are described.

Quantifying sources of black carbon in western North America using observationally based analysis and an emission tagging technique in the Community Atmosphere Model

DOE PAGES

Zhang, Rudong; Wang, Hailong; Hegg, D. A.; ...

2015-11-18

The Community Atmosphere Model (CAM5), equipped with a technique to tag black carbon (BC) emissions by source regions and types, has been employed to establish source–receptor relationships for atmospheric BC and its deposition to snow over western North America. The CAM5 simulation was conducted with meteorological fields constrained by reanalysis for year 2013 when measurements of BC in both near-surface air and snow are available for model evaluation. We find that CAM5 has a significant low bias in predicted mixing ratios of BC in snow but only a small low bias in predicted atmospheric concentrations over northwestern USA and westernmore » Canada. Even with a strong low bias in snow mixing ratios, radiative transfer calculations show that the BC-in-snow darkening effect is substantially larger than the BC dimming effect at the surface by atmospheric BC. Local sources contribute more to near-surface atmospheric BC and to deposition than distant sources, while the latter are more important in the middle and upper troposphere where wet removal is relatively weak. Fossil fuel (FF) is the dominant source type for total column BC burden over the two regions. FF is also the dominant local source type for BC column burden, deposition, and near-surface BC, while for all distant source regions combined the contribution of biomass/biofuel (BB) is larger than FF. An observationally based positive matrix factorization (PMF) analysis of the snow-impurity chemistry is conducted to quantitatively evaluate the CAM5 BC source-type attribution. Furthermore, while CAM5 is qualitatively consistent with the PMF analysis with respect to partitioning of BC originating from BB and FF emissions, it significantly underestimates the relative contribution of BB. In addition to a possible low bias in BB emissions used in the simulation, the model is likely missing a significant source of snow darkening from local soil found in the observations.« less

An innovative technique to synthesize C-doped MgB2 by using chitosan as the carbon source

NASA Astrophysics Data System (ADS)

Bovone, G.; Vignolo, M.; Bernini, C.; Kawale, S.; Siri, A. S.

2014-02-01

Here, we report a new technique to synthesize carbon-doped MgB2 powder. Chitosan was innovatively used as the carbon source during the synthesis of boron from boron oxide. This allowed the introduction of local defects, which later on served as pinning centers in MgB2, in the boron lattice itself, avoiding the traditional and time consuming ways of ex situ MgB2 doping (e.g. ball milling). Two volume percentages of C-doping have been tried and its effect on the superconducting properties, evaluated by magnetic and transport measurements, are discussed here. Morphological analysis by scanning electron microscopy revealed nano-metric grains’ distribution in the boron and MgB2 powder. Mono-filamentary MgB2 wires have been fabricated by an ex situ powder-in-tube technique by using the thus prepared carbon-doped MgB2 and pure MgB2 powders. Transport property measurements on these wires were made and compared with MgB2 wire produced using commercial boron.

2,3-Butanediol Production by Acetogenic Bacteria, an Alternative Route to Chemical Synthesis, Using Industrial Waste Gas ▿ †

PubMed Central

Köpke, Michael; Mihalcea, Christophe; Liew, FungMin; Tizard, Joseph H.; Ali, Mohammed S.; Conolly, Joshua J.; Al-Sinawi, Bakir; Simpson, Séan D.

2011-01-01

2,3-Butanediol (23BD) is a high-value chemical usually produced petrochemically but which can also be synthesized by some bacteria. To date, the best microbial 23BD production rates have been observed using pathogenic bacteria in fermentation systems that depend on sugars as the carbon and energy sources for product synthesis. Here we present evidence of 23BD production by three nonpathogenic acetogenic Clostridium species—Clostridium autoethanogenum, C. ljungdahlii, and C. ragsdalei—using carbon monoxide-containing industrial waste gases or syngas as the sole source of carbon and energy. Through an analysis of the C. ljungdahlii genome, the complete pathway from carbon monoxide to 23BD has been proposed. Homologues of the genes involved in this pathway were also confirmed for the other two species investigated. A gene expression study demonstrates a correlation between mRNA accumulation from 23BD biosynthetic genes and the onset of 23BD production, while a broader expression study of Wood-Ljungdahl pathway genes provides a transcription-level view of one of the oldest existing biochemical pathways. PMID:21685168

The determination of the energy values and the composition analysis of M-16 rifle black powders

NASA Astrophysics Data System (ADS)

Satee, R.; Dararutana, P.; Phutdhawong, W.

2017-09-01

The determination of the energy values, specifically the heat of combustion of various M-16 black powders was the important part of the bullet efficiency investigations. The calorimetric bomb is commonly used for these determinations. Four M-16 black powders from the different sources were used as samples for this research. It was found that, after using calorimetric bomb technique, the gross heating value in Joules/g of sample S1-S4 were 10,647, 10,416, 5,281 and 3,878 respectively. The chemical compositions of carbon (C), hydrogen (H), nitrogen (N) and sulfer (S) have also been determined. The results indicated that carbon and nitrogen compositions of sample S1 shown the highest values and provided little differences with sample S2 while sample S3 and S4 shown the lowest carbon and nitrogen percentage composition. The hydrogen composition of all samples was equally valued, however, only sample 3 and 4 displayed sulfur values while no sulfur values were detected from sample 1 and 2. From these results, the heat values and chemical composition of M-16 black powders were characterized their sources and the energy values might be estimated from the amount of carbon and nitrogen in the black powders. Thus, it would be possible to use this determination analysis in the forensic investigation.

Gridded anthropogenic emissions inventory and atmospheric transport of carbonyl sulfide in the U.S.

NASA Astrophysics Data System (ADS)

Zumkehr, Andrew; Hilton, Timothy W.; Whelan, Mary; Smith, Steve; Campbell, J. Elliott

2017-02-01

Carbonyl sulfide (COS or OCS), the most abundant sulfur-containing gas in the troposphere, has recently emerged as a potentially important atmospheric tracer for the carbon cycle. Atmospheric inverse modeling studies may be able to use existing tower, airborne, and satellite observations of COS to infer information about photosynthesis. However, such analysis relies on gridded anthropogenic COS source estimates that are largely based on industry activity data from over three decades ago. Here we use updated emission factor data and industry activity data to develop a gridded inventory with a 0.1° resolution for the U.S. domain. The inventory includes the primary anthropogenic COS sources including direct emissions from the coal and aluminum industries as well as indirect sources from industrial carbon disulfide emissions. Compared to the previously published inventory, we found that the total anthropogenic source (direct and indirect) is 47% smaller. Using this new gridded inventory to drive the Sulfur Transport and Deposition Model/Weather Research and Forecasting atmospheric transport model, we found that the anthropogenic contribution to COS variation in the troposphere is small relative to the biosphere influence, which is encouraging for carbon cycle applications in this region. Additional anthropogenic sectors with highly uncertain emission factors require further field measurements.

Abundant pre-industrial carbon detected in Canadian Arctic headwaters: implications for the permafrost carbon feedback

NASA Astrophysics Data System (ADS)

Dean, J. F.; van der Velde, Y.; Garnett, M. H.; Dinsmore, K. J.; Baxter, R.; Lessels, J. S.; Smith, P.; Street, L. E.; Subke, J.-A.; Tetzlaff, D.; Washbourne, I.; Wookey, P. A.; Billett, M. F.

2018-03-01

Mobilization of soil/sediment organic carbon into inland waters constitutes a substantial, but poorly-constrained, component of the global carbon cycle. Radiocarbon (14C) analysis has proven a valuable tool in tracing the sources and fate of mobilized carbon, but aquatic 14C studies in permafrost regions rarely detect ‘old’ carbon (assimilated from the atmosphere into plants and soil prior to AD1950). The emission of greenhouse gases derived from old carbon by aquatic systems may indicate that carbon sequestered prior to AD1950 is being destabilized, thus contributing to the ‘permafrost carbon feedback’ (PCF). Here, we measure directly the 14C content of aquatic CO2, alongside dissolved organic carbon, in headwater systems of the western Canadian Arctic—the first such concurrent measurements in the Arctic. Age distribution analysis indicates that the age of mobilized aquatic carbon increased significantly during the 2014 snow-free season as the active layer deepened. This increase in age was more pronounced in DOC, rising from 101-228 years before sampling date (a 120%-125% increase) compared to CO2, which rose from 92-151 years before sampling date (a 59%-63% increase). ‘Pre-industrial’ aged carbon (assimilated prior to ~AD1750) comprised 15%-40% of the total aquatic carbon fluxes, demonstrating the prevalence of old carbon to Arctic headwaters. Although the presence of this old carbon is not necessarily indicative of a net positive PCF, we provide an approach and baseline data which can be used for future assessment of the PCF.

Methodologies for extraction of dissolved inorganic carbon for stable carbon isotope studies : evaluation and alternatives

USGS Publications Warehouse

Hassan, Afifa Afifi

1982-01-01

The gas evolution and the strontium carbonate precipitation techniques to extract dissolved inorganic carbon (DIC) for stable carbon isotope analysis were investigated. Theoretical considerations, involving thermodynamic calculations and computer simulation pointed out several possible sources of error in delta carbon-13 measurements of the DIC and demonstrated the need for experimental evaluation of the magnitude of the error. An alternative analytical technique, equilibration with out-gassed vapor phase, is proposed. The experimental studies revealed that delta carbon-13 of the DIC extracted from a 0.01 molar NaHC03 solution by both techniques agreed within 0.1 per mil with the delta carbon-13 of the DIC extracted by the precipitation technique, and an increase of only 0.27 per mil in that extracted by the gas evolution technique. The efficiency of extraction of DIC decreased with sulfate concentration in the precipitation technique but was independent of sulfate concentration in the gas evolution technique. Both the precipitation and gas evolution technique were found to be satisfactory for extraction of DIC from different kinds of natural water for stable carbon isotope analysis, provided appropriate precautions are observed in handling the samples. For example, it was found that diffusion of atmospheric carbon dioxide does alter the delta carbon-13 of the samples contained in polyethylene bottles; filtration and drying in the air change the delta carbon-13 of the samples contained in polyethylene bottles; filtration and drying in the air change the delta carbon-13 of the precipitation technique; hot manganese dioxide purification changes the delta carbon-13 of carbon dioxide. (USGS)

Deep mantle: Enriched carbon source detected

NASA Astrophysics Data System (ADS)

Barry, Peter H.

2017-09-01

Estimates of carbon in the deep mantle vary by more than an order of magnitude. Coupled volcanic CO2 emission data and magma supply rates reveal a carbon-rich mantle plume source region beneath Hawai'i with 40% more carbon than previous estimates.

cyclostratigraphy, sequence stratigraphy and organic matter accumulation mechanism

NASA Astrophysics Data System (ADS)

Cong, F.; Li, J.

2016-12-01

The first member of Maokou Formation of Sichuan basin is composed of well preserved carbonate ramp couplets of limestone and marlstone/shale. It acts as one of the potential shale gas source rock, and is suitable for time-series analysis. We conducted time-series analysis to identify high-frequency sequences, reconstruct high-resolution sedimentation rate, estimate detailed primary productivity for the first time in the study intervals and discuss organic matter accumulation mechanism of source rock under sequence stratigraphic framework.Using the theory of cyclostratigraphy and sequence stratigraphy, the high-frequency sequences of one outcrop profile and one drilling well are identified. Two third-order sequences and eight fourth-order sequences are distinguished on outcrop profile based on the cycle stacking patterns. For drilling well, sequence boundary and four system tracts is distinguished by "integrated prediction error filter analysis" (INPEFA) of Gamma-ray logging data, and eight fourth-order sequences is identified by 405ka long eccentricity curve in depth domain which is quantified and filtered by integrated analysis of MTM spectral analysis, evolutive harmonic analysis (EHA), evolutive average spectral misfit (eASM) and band-pass filtering. It suggests that high-frequency sequences correlate well with Milankovitch orbital signals recorded in sediments, and it is applicable to use cyclostratigraphy theory in dividing high-frequency(4-6 orders) sequence stratigraphy.High-resolution sedimentation rate is reconstructed through the study interval by tracking the highly statistically significant short eccentricity component (123ka) revealed by EHA. Based on sedimentation rate, measured TOC and density data, the burial flux, delivery flux and primary productivity of organic carbon was estimated. By integrating redox proxies, we can discuss the controls on organic matter accumulation by primary production and preservation under the high-resolution sequence stratigraphic framework. Results show that high average organic carbon contents in the study interval are mainly attributed to high primary production. The results also show a good correlation between high organic carbon accumulation and intervals of transgression.

Spatiotemporal Heterogeneity of Dissolved Organic Carbon in Waters and Soils in a Snow-dominated Headwater Catchment: Investigations at Reynolds Creek Critical Zone Observatory, Owyhee County, Idaho

NASA Astrophysics Data System (ADS)

Radke, A. G.; Godsey, S.; Lohse, K. A.; Huber, D. P.; Patton, N. R.; Holbrook, S.

2017-12-01

The non-uniform distribution of precipitation in snowmelt-driven systems—the result of blowing and drifting snow—is a primary driver of spatial heterogeneity in vegetative communities and soil development. Snowdrifts may increase bedrock weathering below them, creating deeper soils and the potential for greater fracture flow. These snowdrift areas are also commonly more productive than the snow-starved, scoured areas where wind has removed snow. Warming-induced changes in the fraction of precipitation falling as snow, and therefore subject to drifting, may significantly affect carbon dynamics on multiple timescales. The focus of this study is to understand the coupled hydrological and carbon dynamics in a heterogeneous, drift-dominated watershed. We seek to determine the paths of soil water and groundwater in a small headwater catchment (Reynolds Mountain East, Reynolds Creek Critical Zone Observatory, Idaho, USA). Additionally, we anticipate quantifying the flux of dissolved organic carbon through these paths, and relate this to zones of greater vegetative productivity. We deduce likely flowpaths through a combination of soil water, groundwater, and precipitation characterization. Along a transect running from a snowdrift to the stream, we measure hydrometric and hydrochemical signatures of flow throughout the snowmelt period and summer. We then use end-member-mixing analysis to interpret flowpaths in light of inferred subsurface structure derived from drilling and electrical resistance tomography transects. Preliminary results from soil moisture sensors suggest that increased bedrock weathering creates pathways by which snowmelt bypasses portions of the soil, further increasing landscape heterogeneity. Further analysis will identify seasonal changes in carbon sourcing for this watershed, but initial indications are that spring streamwater is sourced primarily from soil water, with close associations between soil carbon and DOC.

Molecular and isotopic tracers used to examine sources of organic matter and its incorporation into the food webs of San Francisco Bay

USGS Publications Warehouse

Canuel, Elizabeth A.; Cloern, James E.; Ringelberg, David B.; Guckert, James B.; Rau, Greg H.

1995-01-01

Multiple indicators (Chl a, C : N ratios, [δ13C]POC, and two classes of lipid biomarker compounds- sterols and phospholipid ester-linked fatty acids) were used to evaluate spatial and temporal variations in the origin of particulate organic matter (POM) in the San Francisco Bay (SFB) estuary. Comparisons were made between the northern and southern subestuaries of SFB, as well as along the salinity gradient of northern SFB. Two sample types were collected-seston, which was used to characterize the bulk POM, and tissues of the suspension-feeding bivalve Potamocorbula amurensis -in order to evaluate the assimilable portion of the POM. Samples were collected around biological and physical events (phytoplankton blooms and freshwater inflow) thought to be the primary mechanisms controlling temporal variability in organic matter sources. Seston samples indicate that phytoplankton sources of POM are important throughout the entire SFB system, with additional inputs of organic matter from bacterial and terrestrial vascular plant sources delivered to the northern region. Analysis of biomarker compounds in P. amurensis tissues indicates that phytoplankton supply a large fraction of the assimilable carbon to clams throughout SFB, although isotopic analysis of clam tissues suggests that the origin of this reactive carbon varies spatially and that freshwater algae are an important source of reactive organic matter to clams living in northern SFB.

Multi-Scale Analysis of Trends in Northeastern Temperate Forest Springtime Phenology

NASA Astrophysics Data System (ADS)

Moon, M.; Melaas, E. K.; Sulla-menashe, D. J.; Friedl, M. A.

2017-12-01

The timing of spring leaf emergence is highly variable in many ecosystems, exerts first-order control growing season length, and significantly modulates seasonally-integrated photosynthesis. Numerous studies have reported trends toward earlier spring phenology in temperate forests, with some papers indicating that this trend is also leading to increased carbon uptake. At broad spatial scales, however, most of these studies have used data from coarse spatial resolution instruments such as MODIS, which does not resolve ecologically important landscape-scale patterns in phenology. In this work, we examine how long-term trends in spring phenology differ across three data sources acquired at different scales of measurements at the Harvard Forest in central Massachusetts. Specifically, we compared trends in the timing of phenology based on long-term in-situ measurements of phenology, estimates based on eddy-covariance measurements of net carbon uptake transition dates, and from two sources of satellite-based remote sensing (MODIS and Landsat) land surface phenology (LSP) data. Our analysis focused on the flux footprint surrounding the Harvard Forest Environmental Measurements (EMS) tower. Our results reveal clearly defined trends toward earlier springtime phenology in Landsat LSP and in the timing of tower-based net carbon uptake. However, we find no statistically significant trend in springtime phenology measured from MODIS LSP data products, possibly because the time series of MODIS observations is relatively short (13 years). The trend in tower-based transition data exhibited a larger negative value than the trend derived from Landsat LSP data (-0.42 and -0.28 days per year for 21 and 28 years, respectively). More importantly, these results have two key implications regarding how changes in spring phenology are impacting carbon uptake at landscape-scale. First, long-term trends in spring phenology can be quite different, depending on what data source is used to estimate the trend, and 2) the response of carbon uptake to climate change may be more sensitive than the response of land surface phenology itself.

An effective method of UV-oxidation of dissolved organic carbon in natural waters for radiocarbon analysis by accelerator mass spectrometry

NASA Astrophysics Data System (ADS)

Xue, Yuejun; Ge, Tiantian; Wang, Xuchen

2015-12-01

Radiocarbon (14C) measurement of dissolved organic carbon (DOC) is a very powerful tool to study the sources, transformation and cycling of carbon in the ocean. The technique, however, remains great challenges for complete and successful oxidation of sufficient DOC with low blanks for high precision carbon isotopic ratio analysis, largely due to the overwhelming proportion of salts and low DOC concentrations in the ocean. In this paper, we report an effective UV-Oxidation method for oxidizing DOC in natural waters for radiocarbon analysis by accelerator mass spectrometry (AMS). The UV-oxidation system and method show 95%±4% oxidation efficiency and high reproducibility for DOC in both river and seawater samples. The blanks associated with the method was also low (about 3 µg C) that is critical for 14C analysis. As a great advantage of the method, multiple water samples can be oxidized at the same time so it reduces the sample processing time substantially compared with other UV-oxidation method currently being used in other laboratories. We have used the system and method for 14C studies of DOC in rivers, estuaries, and oceanic environments and have received promise results.

Multiple-element semiquantitative analysis of one-milligram geochemical samples by D.C. arc emission spectrography

USGS Publications Warehouse

Rait, N.

1981-01-01

A modified method is described for a 1-mg sample multi-element semiquantitative spectrographic analysis. This method uses a direct-current arc source, carbon instead of graphite electrodes, and an 80% argon-20% oxygen atmosphere instead of air. Although this is a destructive method, an analysis can be made for 68 elements in all mineral and geochemical samples. Carbon electrodes have been an aid in improving the detection limits of many elements. The carbon has a greater resistance to heat conductance and develops a better tip, facilitating sample volatilization and counter balancing the cooling effect of a flow of the argon-oxygen mixture around the anode. Where such an argon-oxygen atmosphere is used instead of air, the cyanogen band lines are greatly diminished in intensity, and thus more spectral lines of analysis elements are available for use; the spectral background is also lower. The main advantage of using the carbon electrode and the 80% argon-20% oxygen atmosphere is the improved detection limits of 36 out of 68 elements. The detection limits remain the same for 23 elements, and are not as good for only nine elements. ?? 1981.

Constraining the subsoil carbon source to cave-air CO2 and speleothem calcite in central Texas

NASA Astrophysics Data System (ADS)

Bergel, Shelly J.; Carlson, Peter E.; Larson, Toti E.; Wood, Chris T.; Johnson, Kathleen R.; Banner, Jay L.; Breecker, Daniel O.

2017-11-01

Canonical models for speleothem formation and the subsurface carbon cycle invoke soil respiration as the dominant carbon source. However, evidence from some karst regions suggests that belowground CO2 originates from a deeper, older source. We therefore investigated the carbon sources to central Texas caves. Drip-water chemistry of two caves in central Texas implies equilibration with calcite at CO2 concentrations (PCO2_sat) higher than the maximum CO2 concentrations observed in overlying soils. This observation suggests that CO2 is added to waters after they percolate through the soils, which requires a subsoil carbon source. We directly evaluate the carbon isotope composition of the subsoil carbon source using δ13C measurements on cave-air CO2, which we independently demonstrate has little to no contribution from host rock carbon. We do so using the oxidative ratio, OR, defined as the number of moles of O2 consumed per mole of CO2 produced during respiration. However, additional belowground processes that affect O2 and CO2 concentrations, such as gas-water exchange and/or diffusion, may also influence the measured oxidative ratio, yielding an apparent OR (ORapparent). Cave air in Natural Bridge South Cavern has ORapparent values (1.09 ± 0.06) indistinguishable from those expected for respiration alone (1.08 ± 0.06). Pore space gases from soils above the cave have lower values (ORapparent = 0.67 ± 0.05) consistent with respiration and gas transport by diffusion. The simplest explanation for these observations is that cave air in NB South is influenced by respiration in open-system bedrock fractures such that neither diffusion nor exchange with water influence the composition of the cave air. The radiocarbon activities of NB South cave-air CO2 suggest the subsoil carbon source is hundreds of years old. The calculated δ13C values of the subsoil carbon source are consistent with tree-sourced carbon (perhaps decomposing root matter), the δ13C values of which have shifted during industrialization due to changes in the δ13C values and concentrations of atmospheric CO2. Seasonal variations in PCO2_sat in most of the drip waters suggest that these waters exchange with ventilated bedrock fractures in the epikarst, implying that the subsoil CO2 source contributes carbon to speleothems.

A spatial analysis of the dispersion of transportation induced carbon monoxide using the Gaussian line source method

NASA Astrophysics Data System (ADS)

Tarigan, A. P. M.; Suryati, I.; Gusrianti, D.

2018-03-01

The Purpose of this study is to model the spatial distribution of transportation induced carbon monoxide (CO) from a street, i.e. Jl. Singamangaraja, in Medan City using the gaussian line source method with GIS. It is observed that the traffic volume on the Jl. Singamangaraja is 7,591 units/hour in the morning and 7,433 units/hour in the afternoon. The amount emission rate is 49,171.7 µg/m.s in the morning and 46,943.1 µg/m.s in the afternoon. Based on the gaussian line source method, the highest CO concentration is found at the roadside, i.e. 20,340 µg/Nm3 in the morning and 18,340 µg/Nm3 in the afternoon, which are fairly in agreement with those measured in situ. Using GIS, the CO spatial distribution can visually be modeled to observe the affected area.

40 CFR 458.45 - Standards of performance for new sources.

Code of Federal Regulations, 2010 CFR

2010-07-01

... paragraph, which may be discharged from the carbon black lamp process by a new source subject to the provisions of this subpart: There shall be no discharge of process waste water pollutants to navigable waters. ...) EFFLUENT GUIDELINES AND STANDARDS CARBON BLACK MANUFACTURING POINT SOURCE CATEGORY Carbon Black Lamp...

Growth of graphene films from non-gaseous carbon sources

DOEpatents

Tour, James; Sun, Zhengzong; Yan, Zheng; Ruan, Gedeng; Peng, Zhiwei

2015-08-04

In various embodiments, the present disclosure provides methods of forming graphene films by: (1) depositing a non-gaseous carbon source onto a catalyst surface; (2) exposing the non-gaseous carbon source to at least one gas with a flow rate; and (3) initiating the conversion of the non-gaseous carbon source to the graphene film, where the thickness of the graphene film is controllable by the gas flow rate. Additional embodiments of the present disclosure pertain to graphene films made in accordance with the methods of the present disclosure.

The influence of various carbon and nitrogen sources on oil production by Fusarium oxysporum.

PubMed

Joshi, S; Mathur, J M

1987-01-01

The oil-synthesizing capacity of Fusarium oxysporum, cultivated on basal nutrient medium, was evaluated using different carbon and nitrogen sources. In one of the media, molasses was also used as a principal carbon source. Media containing glucose and ammonium nitrate were found to be most efficient for oil production. Fatty acid profile of the fungal oil indicated the presence of a wide range of fatty acids ranging from C8 to C24. Fatty acid composition largely depends on the type of carbon and nitrogen sources.

Source apportionment of PM2.5 at urban and suburban areas of the Pearl River Delta region, south China - With emphasis on ship emissions.

PubMed

Tao, Jun; Zhang, Leiming; Cao, Junji; Zhong, Liuju; Chen, Dongsheng; Yang, Yihong; Chen, Duohong; Chen, Laiguo; Zhang, Zhisheng; Wu, Yunfei; Xia, Yunjie; Ye, Siqi; Zhang, Renjian

2017-01-01

Daily PM 2.5 samples were collected at an urban site in Guangzhou in 2014 and at a suburban site in Zhuhai in 2014-2015. Samples were subject to chemical analysis for various chemical components including organic carbon (OC), element carbon (EC), major water-soluble inorganic ions, and trace elements. The annual average PM 2.5 mass concentration was 48±22μgm -3 and 45±25μgm -3 in Guangzhou and Zhuhai, respectively, with the highest seasonal average concentration in winter and the lowest in summer at both sites. Regional transport of pollutants accompanied with different air mass origins arriving at the two sites and pollution sources in between the two cities caused larger seasonal variations in Zhuhai (>a factor of 3.5) than in Guangzhou (17% of PM 2.5 mass concentrations. Copyright © 2016 Elsevier B.V. All rights reserved.

Structural evolution of detonation carbon in composition B by X-ray scattering

DOE PAGES

Firestone, Millicent A.; Dattelbaum, Dana M.; Podlesak, David W.; ...

2015-01-01

Products evolved during the detonation of high explosives are primarily a collection of molecular gases and solid carbon condensates. Electron microscopy studies have revealed that detonation carbon (soot) can contain a variety of unique carbon particles possessing novel morphologies, such as carbon onions and ribbons. Despite these observations very little is known about the conditions that leads to the production of these novel carbon nanoparticles. A fuller understanding on conditions that generate such nanoparticles would greatly benefit from time-resolved studies that probe particle formation and evolution through and beyond the chemical reaction zone. Herein, we report initial results employing time-resolvedmore » X-ray scattering (TRSAXS) measurements to monitor nanosecond time-scale carbon products formed from detonating Composition B (60% TNT, 40% RDX). These studies were performed at the Dynamic Compression Sector (DCS, Sector 35) at the Advanced Photon Source (Argonne National Laboratory). Lastly, analysis of the collected scattering patterns reveals the presence of fractal multi-layered carbon condensates.« less

Structural evolution of detonation carbon in composition B by X-ray scattering

NASA Astrophysics Data System (ADS)

Firestone, Millicent A.; Dattelbaum, Dana M.; Podlesak, David W.; Gustavsen, Richard L.; Huber, Rachel C.; Ringstrand, Bryan S.; Watkins, Erik B.; Jensen, Brian; Willey, Trevor; Lauderbauch, Lisa; Hodgin, Ralph; Bagge-Hansen, Michael; van Buuren, Tony; Seifert, Sönke; Graber, Timothy

2017-01-01

Products evolved during the detonation of high explosives are primarily a collection of molecular gases and solid carbon condensates. Electron microscopy studies have revealed that detonation carbon (soot) can contain a variety of unique carbon particles possessing novel morphologies, such as carbon onions and ribbons. Despite these observations very little is known about the conditions that leads to the production of these novel carbon nanoparticles. A fuller understanding on conditions that generate such nanoparticles would greatly benefit from time-resolved studies that probe particle formation and evolution through and beyond the chemical reaction zone. Herein, we report initial results employing time-resolved X-ray scattering (TRSAXS) measurements to monitor nanosecond time-scale carbon products formed from detonating Composition B (60% TNT, 40% RDX). These studies were performed at the Dynamic Compression Sector (DCS, Sector 35) at the Advanced Photon Source (Argonne National Laboratory). Analysis of the collected scattering patterns reveals the presence of fractal multi-layered carbon condensates.

A contemporary carbon balance for the Northeast region of the United States.

PubMed

Lu, Xiaoliang; Kicklighter, David W; Melillo, Jerry M; Yang, Ping; Rosenzweig, Bernice; Vörösmarty, Charles J; Gross, Barry; Stewart, Robert J

2013-01-01

Development of regional policies to reduce net emissions of carbon dioxide (CO2) would benefit from the quantification of the major components of the region's carbon balance--fossil fuel CO2 emissions and net fluxes between land ecosystems and the atmosphere. Through spatially detailed inventories of fossil fuel CO2 emissions and a terrestrial biogeochemistry model, we produce the first estimate of regional carbon balance for the Northeast United States between 2001 and 2005. Our analysis reveals that the region was a net carbon source of 259 Tg C/yr over this period. Carbon sequestration by land ecosystems across the region, mainly forests, compensated for about 6% of the region's fossil fuel emissions. Actions that reduce fossil fuel CO2 emissions are key to improving the region's carbon balance. Careful management of forested lands will be required to protect their role as a net carbon sink and a provider of important ecosystem services such as water purification, erosion control, wildlife habitat and diversity, and scenic landscapes.

Synchrotron-based Infrared-microspectroscopy reveals the impact of land management on carbon storage in soil micro-aggregates

NASA Astrophysics Data System (ADS)

Hernandez-Soriano, Maria C.; Dalal, Ram C.; Menzies, Neal W.; Kopittke, Peter M.

2015-04-01

Carbon stabilization in soil microaggregates results from chemical and biological processes that are highly sensitive to changes in land use. Indeed, such processes govern soil capability to store carbon, this being essential for soil health and productivity and to regulate emissions of soil organic carbon (SOC) as CO2. The identification of carbon functionalities using traditional mid-infrared analysis can be linked to carbon metabolism in soil but differences associated to land use are generally limited. The spatial resolution of synchrotron-based Infrared-microspectroscopy allows mapping microaggregate-associated forms of SOC because it has 1000 times higher brightness than a conventional thermal globar source. These maps can contribute to better understand molecular organization of SOC, physical protection in the soil particles and co-localization of carbon sources with microbial processes. Spatially-resolved analyses of carbon distribution in micro-aggregates (<200 μm diameter) have been conducted using FTIR microspectroscopy (Infrared Microspectroscopy beamline, Australian Synchrotron). Two soil types (Ferralsol and Vertisol, World Reference Base 2014) were collected from undisturbed areas and from a location(s) immediately adjacent which has a long history of agricultural use (>20 years). Soils were gently screened (250 μm) to obtain intact microaggregates which were humidified and frozen at -20°C, and sectioned (200 μm thickness) using a diamond knife and a cryo-ultramicrotome. The sections were placed between CaF2 windows and the spectra were acquired in transmission mode. The maps obtained (5 µm step-size over ca. 150 × 150 µm) revealed carbon distribution in microaggregates from soils under contrasting land management, namely undisturbed and cropping land. Accumulation of aromatic and carboxylic functions on specific spots and marginal co-localization with clays was observed, which suggests processes other than organo-mineral associations being responsible for carbon stabilization. A substantial decrease in carboxylic compounds was observed for agricultural soils. Clays were mostly co-localized with alkenes and polysaccharides, particularly in agricultural soils, likely due to enhanced microbial activity in those spots. Results will be linked to currently ongoing analysis of soil enzymes activities and characterization of dissolved organic carbon components. This novel methodological approach combines biological and chemical information on organic carbon dynamics in soil at a molecular level and will constitute a substantial advance towards understanding carbon storage in soil and the long term impact of land management.

Biodegradation of alkaline lignin by Bacillus ligniniphilus L1

DOE PAGES

Zhu, Daochen; Zhang, Peipei; Xie, Changxiao; ...

2017-02-21

Lignin is the most abundant aromatic biopolymer in the biosphere and it comprises up to 30% of plant biomass. Although lignin is the most recalcitrant component of the plant cell wall, still there are microorganisms able to decompose it or degrade it. Fungi are recognized as the most widely used microbes for lignin degradation. However, bacteria have also been known to be able to utilize lignin as a carbon or energy source. Bacillus ligniniphilus L1 was selected in this study due to its capability to utilize alkaline lignin as a single carbon or energy source and its excellent ability tomore » survive in extreme environments. To investigate the aromatic metabolites of strain L1 decomposing alkaline lignin, GC–MS analysis was performed and fifteen single phenol ring aromatic compounds were identified. The dominant absorption peak included phenylacetic acid, 4-hydroxy-benzoicacid, and vanillic acid with the highest proportion of metabolites resulting in 42%. Comparison proteomic analysis was carried out for further study showed that approximately 1447 kinds of proteins were produced, 141 of which were at least twofold up-regulated with alkaline lignin as the single carbon source. The up-regulated proteins contents different categories in the biological functions of protein including lignin degradation, ABC transport system, environmental response factors, protein synthesis, assembly, etc. In conclusion, GC–MS analysis showed that alkaline lignin degradation of strain L1 produced 15 kinds of aromatic compounds. Comparison proteomic data and metabolic analysis showed that to ensure the degradation of lignin and growth of strain L1, multiple aspects of cells metabolism including transporter, environmental response factors, and protein synthesis were enhanced. Based on genome and proteomic analysis, at least four kinds of lignin degradation pathway might be present in strain L1, including a Gentisate pathway, the benzoic acid pathway and the β-ketoadipate pathway. The study provides an important basis for lignin degradation by bacteria.« less

Biodegradation of alkaline lignin by Bacillus ligniniphilus L1

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhu, Daochen; Zhang, Peipei; Xie, Changxiao

Lignin is the most abundant aromatic biopolymer in the biosphere and it comprises up to 30% of plant biomass. Although lignin is the most recalcitrant component of the plant cell wall, still there are microorganisms able to decompose it or degrade it. Fungi are recognized as the most widely used microbes for lignin degradation. However, bacteria have also been known to be able to utilize lignin as a carbon or energy source. Bacillus ligniniphilus L1 was selected in this study due to its capability to utilize alkaline lignin as a single carbon or energy source and its excellent ability tomore » survive in extreme environments. To investigate the aromatic metabolites of strain L1 decomposing alkaline lignin, GC–MS analysis was performed and fifteen single phenol ring aromatic compounds were identified. The dominant absorption peak included phenylacetic acid, 4-hydroxy-benzoicacid, and vanillic acid with the highest proportion of metabolites resulting in 42%. Comparison proteomic analysis was carried out for further study showed that approximately 1447 kinds of proteins were produced, 141 of which were at least twofold up-regulated with alkaline lignin as the single carbon source. The up-regulated proteins contents different categories in the biological functions of protein including lignin degradation, ABC transport system, environmental response factors, protein synthesis, assembly, etc. In conclusion, GC–MS analysis showed that alkaline lignin degradation of strain L1 produced 15 kinds of aromatic compounds. Comparison proteomic data and metabolic analysis showed that to ensure the degradation of lignin and growth of strain L1, multiple aspects of cells metabolism including transporter, environmental response factors, and protein synthesis were enhanced. Based on genome and proteomic analysis, at least four kinds of lignin degradation pathway might be present in strain L1, including a Gentisate pathway, the benzoic acid pathway and the β-ketoadipate pathway. The study provides an important basis for lignin degradation by bacteria.« less

Research to Support California Greenhouse Gas Reduction Programs

NASA Astrophysics Data System (ADS)

Croes, B. E.; Charrier-Klobas, J. G.; Chen, Y.; Duren, R. M.; Falk, M.; Franco, G.; Gallagher, G.; Huang, A.; Kuwayama, T.; Motallebi, N.; Vijayan, A.; Whetstone, J. R.

2016-12-01

Since the passage of the California Global Warming Solutions Act in 2006, California state agencies have developed comprehensive programs to reduce both long-lived and short-lived climate pollutants. California is already close to achieving its goal of reducing greenhouse (GHG) emissions to 1990 levels by 2020, about a 30% reduction from business as usual. In addition, California has developed strategies to reduce GHG emissions another 40% by 2030, which will put the State on a path to meeting its 2050 goal of an 80% reduction. To support these emission reduction goals, the California Air Resources Board (CARB) and the California Energy Commission have partnered with NASA's Carbon Monitoring System (CMS) program on a comprehensive research program to identify and quantify the various GHG emission source sectors in the state. These include California-specific emission studies and inventories for carbon dioxide (CO2), methane (CH4), and nitrous oxide (N2O) emission sources; a Statewide GHG Monitoring Network for these pollutants integrated with the Los Angeles Megacities Carbon Project funded by several federal agencies; efforts to verify emission inventories using inversion modeling and other techniques; mobile measurement platforms and flux chambers to measure local and source-specific emissions; and a large-scale statewide methane survey using a tiered monitoring and measurement program, which will include satellite, airborne, and ground-level measurements of the various regions and source sectors in the State. In addition, there are parallel activities focused on black carbon (BC) and fluorinated gases (F-gases) by CARB. This presentation will provide an overview of results from inventory, monitoring, data analysis, and other research efforts on Statewide, regional, and local sources of GHG emissions in California.

Carbon Source-Dependent Inducible Metabolism of Veratryl Alcohol and Ferulic Acid in Pseudomonas putida CSV86

PubMed Central

Mohan, Karishma

2017-01-01

ABSTRACT Pseudomonas putida CSV86 degrades lignin-derived metabolic intermediates, viz., veratryl alcohol, ferulic acid, vanillin, and vanillic acid, as the sole sources of carbon and energy. Strain CSV86 also degraded lignin sulfonate. Cell respiration, enzyme activity, biotransformation, and high-pressure liquid chromatography (HPLC) analyses suggest that veratryl alcohol and ferulic acid are metabolized to vanillic acid by two distinct carbon source-dependent inducible pathways. Vanillic acid was further metabolized to protocatechuic acid and entered the central carbon pathway via the β-ketoadipate route after ortho ring cleavage. Genes encoding putative enzymes involved in the degradation were found to be present at fer, ver, and van loci. The transcriptional analysis suggests a carbon source-dependent cotranscription of these loci, substantiating the metabolic studies. Biochemical and quantitative real-time (qRT)-PCR studies revealed the presence of two distinct O-demethylases, viz., VerAB and VanAB, involved in the oxidative demethylation of veratric acid and vanillic acid, respectively. This report describes the various steps involved in metabolizing lignin-derived aromatic compounds at the biochemical level and identifies the genes involved in degrading veratric acid and the arrangement of phenylpropanoid metabolic genes as three distinct inducible transcription units/operons. This study provides insight into the bacterial degradation of lignin-derived aromatics and the potential of P. putida CSV86 as a suitable candidate for producing valuable products. IMPORTANCE Pseudomonas putida CSV86 metabolizes lignin and its metabolic intermediates as a carbon source. Strain CSV86 displays a unique property of preferential utilization of aromatics, including for phenylpropanoids over glucose. This report unravels veratryl alcohol metabolism and genes encoding veratric acid O-demethylase, hitherto unknown in pseudomonads, thereby providing new insight into the metabolic pathway and gene pool for lignin degradation in bacteria. The biochemical and genetic characterization of phenylpropanoid metabolism makes it a prospective system for its application in producing valuable products, such as vanillin and vanillic acid, from lignocellulose. This study supports the immense potential of P. putida CSV86 as a suitable candidate for bioremediation and biorefinery. PMID:28188206

CARVE: The Carbon in Arctic Reservoirs Vulnerability Experiment

NASA Technical Reports Server (NTRS)

Miller, Charles E.; Dinardo, Steven J.

2012-01-01

The Carbon in Arctic Reservoirs Vulnerability Experiment (CARVE) is a NASA Earth Ventures (EV-1) investigation designed to quantify correlations between atmospheric and surface state variables for the Alaskan terrestrial ecosystems through intensive seasonal aircraft campaigns, ground-based observations, and analysis sustained over a 5-year mission. CARVE bridges critical gaps in our knowledge and understanding of Arctic ecosystems, linkages between the Arctic hydrologic and terrestrial carbon cycles, and the feedbacks from fires and thawing permafrost. CARVE's objectives are to: (1) Directly test hypotheses attributing the mobilization of vulnerable Arctic carbon reservoirs to climate warming; (2) Deliver the first direct measurements and detailed maps of CO2 and CH4 sources on regional scales in the Alaskan Arctic; and (3) Demonstrate new remote sensing and modeling capabilities to quantify feedbacks between carbon fluxes and carbon cycle-climate processes in the Arctic (Figure 1). We describe the investigation design and results from 2011 test flights in Alaska.

Denitrification-Efficiencies of Alternate Carbon Sources

DTIC Science & Technology

1984-07-01

carbon source evaluated, while sweet whey, corn steep liquor , acid whey and soluble potato solids followed in order of decreasing efficiency. Three of...denitrification and total organic carbon removal with ’I. sweet whey 11 3. Percent denitrification and total organic carbon removal with corn steep liquor ...and total organic carbon removal with hydrolyzed sludge 18 10. Percent denitrification and total organic carbon removal with fish stick 19 11

Dynamic Balancing of Isoprene Carbon Sources Reflects Photosynthetic and Photorespiratory Responses to Temperature Stress1[W][OPEN

PubMed Central

Chambers, Jeffrey; Alves, Eliane G.; Teixeira, Andrea; Garcia, Sabrina; Holm, Jennifer; Higuchi, Niro; Manzi, Antonio; Abrell, Leif; Fuentes, Jose D.; Nielsen, Lars K.; Torn, Margaret S.; Vickers, Claudia E.

2014-01-01

The volatile gas isoprene is emitted in teragrams per annum quantities from the terrestrial biosphere and exerts a large effect on atmospheric chemistry. Isoprene is made primarily from recently fixed photosynthate; however, alternate carbon sources play an important role, particularly when photosynthate is limiting. We examined the relative contribution of these alternate carbon sources under changes in light and temperature, the two environmental conditions that have the strongest influence over isoprene emission. Using a novel real-time analytical approach that allowed us to examine dynamic changes in carbon sources, we observed that relative contributions do not change as a function of light intensity. We found that the classical uncoupling of isoprene emission from net photosynthesis at elevated leaf temperatures is associated with an increased contribution of alternate carbon. We also observed a rapid compensatory response where alternate carbon sources compensated for transient decreases in recently fixed carbon during thermal ramping, thereby maintaining overall increases in isoprene production rates at high temperatures. Photorespiration is known to contribute to the decline in net photosynthesis at high leaf temperatures. A reduction in the temperature at which the contribution of alternate carbon sources increased was observed under photorespiratory conditions, while photosynthetic conditions increased this temperature. Feeding [2-13C]glycine (a photorespiratory intermediate) stimulated emissions of [13C1–5]isoprene and 13CO2, supporting the possibility that photorespiration can provide an alternate source of carbon for isoprene synthesis. Our observations have important implications for establishing improved mechanistic predictions of isoprene emissions and primary carbon metabolism, particularly under the predicted increases in future global temperatures. PMID:25318937

Dynamic balancing of isoprene carbon sources reflects photosynthetic and photorespiratory responses to temperature stress.

PubMed

Jardine, Kolby; Chambers, Jeffrey; Alves, Eliane G; Teixeira, Andrea; Garcia, Sabrina; Holm, Jennifer; Higuchi, Niro; Manzi, Antonio; Abrell, Leif; Fuentes, Jose D; Nielsen, Lars K; Torn, Margaret S; Vickers, Claudia E

2014-12-01

The volatile gas isoprene is emitted in teragrams per annum quantities from the terrestrial biosphere and exerts a large effect on atmospheric chemistry. Isoprene is made primarily from recently fixed photosynthate; however, alternate carbon sources play an important role, particularly when photosynthate is limiting. We examined the relative contribution of these alternate carbon sources under changes in light and temperature, the two environmental conditions that have the strongest influence over isoprene emission. Using a novel real-time analytical approach that allowed us to examine dynamic changes in carbon sources, we observed that relative contributions do not change as a function of light intensity. We found that the classical uncoupling of isoprene emission from net photosynthesis at elevated leaf temperatures is associated with an increased contribution of alternate carbon. We also observed a rapid compensatory response where alternate carbon sources compensated for transient decreases in recently fixed carbon during thermal ramping, thereby maintaining overall increases in isoprene production rates at high temperatures. Photorespiration is known to contribute to the decline in net photosynthesis at high leaf temperatures. A reduction in the temperature at which the contribution of alternate carbon sources increased was observed under photorespiratory conditions, while photosynthetic conditions increased this temperature. Feeding [2-(13)C]glycine (a photorespiratory intermediate) stimulated emissions of [(13)C1-5]isoprene and (13)CO2, supporting the possibility that photorespiration can provide an alternate source of carbon for isoprene synthesis. Our observations have important implications for establishing improved mechanistic predictions of isoprene emissions and primary carbon metabolism, particularly under the predicted increases in future global temperatures. © 2014 American Society of Plant Biologists. All Rights Reserved.

First negative ion beam measurement by the Short-Time Retractable Instrumented Kalorimeter Experiment (STRIKE)

NASA Astrophysics Data System (ADS)

Serianni, G.; De Muri, M.; Muraro, A.; Veltri, P.; Bonomo, F.; Chitarin, G.; Pasqualotto, R.; Pavei, M.; Rizzolo, A.; Valente, M.; Franzen, P.; Ruf, B.; Schiesko, L.

2014-02-01

The Source for Production of Ion of Deuterium Extracted from Rf plasma (SPIDER) test facility is under construction in Padova to optimise the operation of the beam source of ITER neutral beam injectors. The SPIDER beam will be characterised by the instrumented calorimeter STRIKE, whose main components are one-directional carbon-fibre-carbon-composite tiles. A small-scale version of the entire system has been employed in the BAvarian Test MAchine for Negative ions (BATMAN) testbed by arranging two prototype tiles in the vertical direction. The paper presents a description of the mini-STRIKE system and of the data analysis procedures, as well as some results concerning the BATMAN beam under varying operating conditions.

First negative ion beam measurement by the Short-Time Retractable Instrumented Kalorimeter Experiment (STRIKE)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Serianni, G., E-mail: gianluigi.serianni@igi.cnr.it; De Muri, M.; Veltri, P.

2014-02-15

The Source for Production of Ion of Deuterium Extracted from Rf plasma (SPIDER) test facility is under construction in Padova to optimise the operation of the beam source of ITER neutral beam injectors. The SPIDER beam will be characterised by the instrumented calorimeter STRIKE, whose main components are one-directional carbon-fibre-carbon-composite tiles. A small-scale version of the entire system has been employed in the BAvarian Test MAchine for Negative ions (BATMAN) testbed by arranging two prototype tiles in the vertical direction. The paper presents a description of the mini-STRIKE system and of the data analysis procedures, as well as some resultsmore » concerning the BATMAN beam under varying operating conditions.« less

A facile approach towards increasing the nitrogen-content in nitrogen-doped carbon nanotubes via halogenated catalysts

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ombaka, L.M.; Ndungu, P.G.; Department of Applied Chemistry, Doornfontein Campus, University of Johannesburg, P.O. Box 17011, Johannesburg 2028

Nitrogen-doped carbon nanotubes (N-CNTs) have been synthesized at 850 °C via a CVD deposition technique by use of three ferrocenyl derivative catalysts, i.e. para-CN, -CF{sub 3} and -Cl substituted-phenyl rings. The synthesized catalysts have been characterized by NMR, IR, HR-MS and XRD. The XRD analysis of the para-CF{sub 3} catalyst indicates that steric factors influence the X-ray structure of 1,1′-ferrocenylphenyldiacrylonitriles. Acetonitrile or pyridine was used as carbon and nitrogen sources to yield mixtures of N-CNTs and carbon spheres (CS). The N-CNTs obtained from the para-CF{sub 3} catalysts, in pyridine, have the highest nitrogen-doping level, show a helical morphology and aremore » less thermally stable compared with those synthesized by use of the para-CN and -Cl as catalyst. This suggests that fluorine heteroatoms enhance nitrogen-doping in N-CNTs and formation of helical-N-CNTs (H-N-CNTs). The para-CF{sub 3} and para-Cl catalysts in acetonitrile yielded iron-filled N-CNTs, indicating that halogens promote encapsulation of iron into the cavity of N-CNT. The use of acetonitrile, as carbon and nitrogen source, with the para-CN and -Cl as catalysts also yielded a mixture of N-CNTs and carbon nanofibres (CNFs), with less abundance of CNFs in the products obtained using para-Cl catalysts. However, para-CF{sub 3} catalyst in acetonitrile gave N-CNTs as the only shaped carbon nanomaterials. - Graphical abstract: Graphical abstract showing the synthesis of N-CNTs using halogenated-ferrocenyl derivatives as catalyst with pyridine or acetonitrile as nitrogen and carbon sources via the chemical vapour deposition technique. - Highlights: • N-CNTs were synthesized from halogenated ferrocenyl catalysts. • Halogenated catalysts promote nitrogen-doping and pyridinic nitrogen in N-CNTs. • Halogenated catalysts facilitate iron filling of N-CNTs.« less

Variations in microbial carbon sources and cycling in the deep continental subsurface

NASA Astrophysics Data System (ADS)

Simkus, Danielle N.; Slater, Greg F.; Lollar, Barbara Sherwood; Wilkie, Kenna; Kieft, Thomas L.; Magnabosco, Cara; Lau, Maggie C. Y.; Pullin, Michael J.; Hendrickson, Sarah B.; Wommack, K. Eric; Sakowski, Eric G.; van Heerden, Esta; Kuloyo, Olukayode; Linage, Borja; Borgonie, Gaetan; Onstott, Tullis C.

2016-01-01

Deep continental subsurface fracture water systems, ranging from 1.1 to 3.3 km below land surface (kmbls), were investigated to characterize the indigenous microorganisms and elucidate microbial carbon sources and their cycling. Analysis of phospholipid fatty acid (PLFA) abundances and direct cell counts detected varying biomass that was not correlated with depth. Compound-specific carbon isotope analyses (δ13C and Δ14C) of the phospholipid fatty acids (PLFAs) and carbon substrates combined with genomic analyses did identify, however, distinct carbon sources and cycles between the two depth ranges studied. In the shallower boreholes at circa 1 kmbls, isotopic evidence indicated microbial incorporation of biogenic CH4 by the in situ microbial community. At the shallowest site, 1.05 kmbls in Driefontein mine, this process clearly dominated the isotopic signal. At slightly deeper depths, 1.34 kmbls in Beatrix mine, the isotopic data indicated the incorporation of both biogenic CH4 and dissolved inorganic carbon (DIC) derived from CH4 oxidation. In both of these cases, molecular genetic analysis indicated that methanogenic and methanotrophic organisms together comprised a small component (<5%) of the microbial community. Thus, it appears that a relatively minor component of the prokaryotic community is supporting a much larger overall bacterial community in these samples. In the samples collected from >3 kmbls in Tau Tona mine (TT107, TT109 Bh2), the CH4 had an isotopic signature suggesting a predominantly abiogenic origin with minor inputs from microbial methanogenesis. In these samples, the isotopic enrichments (δ13C and Δ14C) of the PLFAs relative to CH4 were consistent with little incorporation of CH4 into the biomass. The most 13C-enriched PLFAs were observed in TT107 where the dominant CO2-fixation pathway was the acetyl-CoA pathway by non-acetogenic bacteria. The differences in the δ13C of the PLFAs and the DIC and DOC for TT109 Bh2 were ∼-24‰ and 0‰, respectively. The dominant CO2-fixation pathways were 3-HP/4-HB cycle > acetyl-CoA pathway > reductive pentose phosphate cycle.

Quantifying uncertainty in national forest carbon stocks: challenges and opportunities for the United States National Greenhouse Gas Inventory

NASA Astrophysics Data System (ADS)

Clough, B.; Russell, M.; Domke, G. M.; Woodall, C. W.

2016-12-01

Uncertainty estimates are needed to establish confidence in national forest carbon stocks and to verify changes reported to the United Nations Framework Convention on Climate Change. Good practice guidance from the Intergovernmental Panel on Climate Change stipulates that uncertainty assessments should neither exaggerate nor underestimate the actual error within carbon stocks, yet methodological guidance for forests has been hampered by limited understanding of how complex dynamics give rise to errors across spatial scales (i.e., individuals to continents). This talk highlights efforts to develop a multi-scale, data-driven framework for assessing uncertainty within the United States (US) forest carbon inventory, and focuses on challenges and opportunities for improving the precision of national forest carbon stock estimates. Central to our approach is the calibration of allometric models with a newly established legacy biomass database for North American tree species, and the use of hierarchical models to link these data with the Forest Inventory and Analysis (FIA) database as well as remote sensing datasets. Our work suggests substantial risk for misestimating key sources of uncertainty including: (1) attributing more confidence in allometric models than what is warranted by the best available data; (2) failing to capture heterogeneity in biomass stocks due to environmental variation at regional scales; and (3) ignoring spatial autocorrelation and other random effects that are characteristic of national forest inventory data. Our results suggest these sources of error may be much higher than is generally assumed, though these results must be understood with the limited scope and availability of appropriate calibration data in mind. In addition to reporting on important sources of uncertainty, this talk will discuss opportunities to improve the precision of national forest carbon stocks that are motivated by our use of data-driven forecasting including: (1) improving the taxonomic and geographic scope of available biomass data; (2) direct attribution of landscape-level heterogeneity in biomass stocks to specific ecological processes; and (3) integration of expert opinion and meta-analysis to lessen the influence of often highly variable datasets on biomass stock forecasts.

Do oceanic emissions account for the missing source of atmospheric carbonyl sulfide?

NASA Astrophysics Data System (ADS)

Lennartz, Sinikka; Marandino, Christa A.; von Hobe, Marc; Cortés, Pau; Simó, Rafel; Booge, Dennis; Quack, Birgit; Röttgers, Rüdiger; Ksionzek, Kerstin; Koch, Boris P.; Bracher, Astrid; Krüger, Kirstin

2016-04-01

Carbonyl sulfide (OCS) has a large potential to constrain terrestrial gross primary production (GPP), one of the largest carbon fluxes in the carbon cycle, as it is taken up by plants in a similar way as CO2. To estimate GPP in a global approach, the magnitude and seasonality of sources and sinks of atmospheric OCS have to be well understood, to distinguish between seasonal variation caused by vegetation uptake and other sources or sinks. However, the atmospheric budget is currently highly uncertain, and especially the oceanic source strength is debated. Recent studies suggest that a missing source of several hundreds of Gg sulfur per year is located in the tropical ocean by a top-down approach. Here, we present highly-resolved OCS measurements from two cruises to the tropical Pacific and Indian Ocean as a bottom-up approach. The results from these cruises show that opposite to the assumed ocean source, direct emissions of OCS from the tropical ocean are unlikely to account for the missing source. To reduce uncertainty in the global oceanic emission estimate, our understanding of the production and consumption processes of OCS and its precursors, dimethylsulfide (DMS) and carbon disulphide (CS2), needs improvement. Therefore, we investigate the influence of dissolved organic matter (DOM) on the photochemical production of OCS in seawater by considering analysis of the composition of DOM from the two cruises. Additionally, we discuss the potential of oceanic emissions of DMS and CS2 to closing the atmospheric OCS budget. Especially the production and consumption processes of CS2 in the surface ocean are not well known, thus we evaluate possible photochemical or biological sources by analyzing its covariation of biological and photochemical parameters.

Agenda and Meeting Summary from Final Workshop on Arctic Black Carbon: Reduction of Black Carbon from Diesel Sources

EPA Pesticide Factsheets

The U.S. Environmental Protection Agency, Battelle Memorial Institute and WWF-Russia organized the final workshop on Arctic Black Carbon: Reduction of Black Carbon from Diesel Sources on November 5, 2014 in Murmansk, Russia.

Agenda and Meeting Summary from Best Practices Training on Arctic Black Carbon: Reduction of Black Carbon from Diesel Sources

EPA Pesticide Factsheets

From April 15-19, 2013, EPA's partners hosted the Best Practices Training on Arctic Black Carbon: Reduction of Black Carbon from Diesel Sources in Murmansk, Russia. Over the course of this event, participants:

delta 15N and non-carbonate delta 13C values for two petroleum source rock reference materials and a marine sediment reference material

USGS Publications Warehouse

Dennen, Kristin O.; Johnson, Craig A.; Otter, Marshall L.; Silva, Steven R.; Wandless, Gregory A.

2006-01-01

Samples of United States Geological Survey (USGS) Certified Reference Materials USGS Devonian Ohio Shale (SDO-1), and USGS Eocene Green River Shale (SGR-1), and National Research Council Canada (NRCC) Certified Marine Sediment Reference Material (PACS-2), were sent for analysis to four separate analytical laboratories as blind controls for organic rich sedimentary rock samples being analyzed from the Red Dog mine area in Alaska. The samples were analyzed for stable isotopes of carbon (delta13Cncc) and nitrogen (delta15N), percent non-carbonate carbon (Wt % Cncc) and percent nitrogen (Wt % N). SDO-1, collected from the Huron Member of the Ohio Shale, near Morehead, Kentucky, and SGR-1, collected from the Mahogany zone of the Green River Formation are petroleum source rocks used as reference materials for chemical analyses of sedimentary rocks. PACS-2 is modern marine sediment collected from the Esquimalt, British Columbia harbor. The results presented in this study are, with the exceptions noted below, the first published for these reference materials. There are published information values for the elemental concentrations of 'organic' carbon (Wt % Corg measured range is 8.98 - 10.4) and nitrogen (Wt % Ntot 0.347 with SD 0.043) only for SDO-1. The suggested values presented here should be considered 'information values' as defined by the NRCC Institute for National Measurement Reference Materials and should be useful for the analysis of 13C, 15N, C and N in organic material in sedimentary rocks.

Sources of dissolved and particulate organic material in Loch Vale Watershed, Rocky Mountain National Park, Colorado, USA

USGS Publications Warehouse

Baron, Jill S.; McKnight, Diane M.; Denning, A. Scott

1991-01-01

The sources of both dissolved organic carbon (DOC) and particulate organic carbon (POC) to an alpine (Sky Pond) and a subalpine lake (The Loch) in Rocky Mountain National Park were explored for four years. The importance of both autochthonous and allochthonous sources of organic matter differ, not only between alpine and subalpine locations, but also seasonally. Overall, autochthonous sources dominate the organic carbon of the alpine lake, while allochthonous sources are a more significant source of organic carbon to the subalpine lake. In the alpine lake, Sky Pond, POC makes up greater than one third of the total organic matter content of the water column, and is related to phytoplankton abundance. Dissolved organic carbon is a product of within-lake activity in Sky Pond except during spring snowmelt and early summer (May–July), when stable carbon isotope ratios suggest a terrestrial source. In the subalpine lake, The Loch, DOC is a much more important constituent of water column organic material than POC, comprising greater than 90% of the spring snowmelt organic matter, and greater than 75% of the organic matter over the rest of the year. Stable carbon isotope ratios and a very strong relation of DOC with soluble Al(tot) indicate DOC concentrations are almost entirely related to flushing of soil water from the surrounding watershed during spring snowmelt. Stable carbon isotope ratios indicate that, for both lakes, phytoplankton is an important source of DOC in the winter, while terrestrial material of plant or microbial origin contributes DOC during snowmelt and summer.

Proteome analysis of yeast response to various nutrient limitations

PubMed Central

Kolkman, Annemieke; Daran-Lapujade, Pascale; Fullaondo, Asier; Olsthoorn, Maurien M A; Pronk, Jack T; Slijper, Monique; Heck, Albert J R

2006-01-01

We compared the response of Saccharomyces cerevisiae to carbon (glucose) and nitrogen (ammonia) limitation in chemostat cultivation at the proteome level. Protein levels were differentially quantified using unlabeled and 15N metabolically labeled yeast cultures. A total of 928 proteins covering a wide range of isoelectric points, molecular weights and subcellular localizations were identified. Stringent statistical analysis identified 51 proteins upregulated in response to glucose limitation and 51 upregulated in response to ammonia limitation. Under glucose limitation, typical glucose-repressed genes encoding proteins involved in alternative carbon source utilization, fatty acids β-oxidation and oxidative phosphorylation displayed an increased protein level. Proteins upregulated in response to nitrogen limitation were mostly involved in scavenging of alternative nitrogen sources and protein degradation. Comparison of transcript and protein levels clearly showed that upregulation in response to glucose limitation was mainly transcriptionally controlled, whereas upregulation in response to nitrogen limitation was essentially controlled at the post-transcriptional level by increased translational efficiency and/or decreased protein degradation. These observations underline the need for multilevel analysis in yeast systems biology. PMID:16738570

Identification of potential hydrophobic properties of carbon layer from the coffee bean waste

NASA Astrophysics Data System (ADS)

Fitria, D.; Baroroh, L. A. Al; Destyorini, F.; Widayatno, W. B.; Amal, M. I.; Wismogroho, A. S.

2018-03-01

The significant increase of waste due to vast development of human civilization and industrialization has plunged humanity into various environmental issues. Nowadays, the concern on waste handling and conversion into more valuable material has become one of hot research topics. Biomass waste has great abundance with various types that can be utilized for many applications such as landfill, recycled-material, adsorbent, separation, catalysis, and so on. In this study, coffee bean waste (CBW) was used as a source to produce hydrophobic layer. The CBW was converted into amorphous carbon using simple carbonization method at 500 °C, dispersed in acetic acid and then mixed with polyvinyl alcohol (PVA) at low temperature heating. In order to investigate effects of composition on hydrophobicity properties, ratio of carbon and PVA was varied. In addition, acetic acid was used to evaluate effect of dispersant on hydrophobic properties. SEM analysis reveals unique morphology of carbon layer. The measurement of contact angle demonstrates that this unique morphology possesses comparable hydrophobicity with that of some well-known materials. Fourier transform infrared spectroscopy (FTIR) analysis confirms the effect of PVA bonding and carbon layer on its hydrophobicity.

Chemical compositions and source identification of PM₂.₅ aerosols for estimation of a diesel source surrogate.

PubMed

Sahu, Manoranjan; Hu, Shaohua; Ryan, Patrick H; Le Masters, Grace; Grinshpun, Sergey A; Chow, Judith C; Biswas, Pratim

2011-06-01

Exposure to traffic-related pollution during childhood has been associated with asthma exacerbation, and asthma incidence. The objective of the Cincinnati Childhood Allergy and Air Pollution Study (CCAAPS) is to determine if the development of allergic and respiratory disease is associated with exposure to diesel engine exhaust particles. A detailed receptor model analyses was undertaken by applying positive matrix factorization (PMF) and UNMIX receptor models to two PM₂.₅ data sets: one consisting of two carbon fractions and the other of eight temperature-resolved carbon fractions. Based on the source profiles resolved from the analyses, markers of traffic-related air pollution were estimated: the elemental carbon attributed to traffic (ECAT) and elemental carbon attributed to diesel vehicle emission (ECAD). Application of UNMIX to the two data sets generated four source factors: combustion related sulfate, traffic, metal processing and soil/crustal. The PMF application generated six source factors derived from analyzing two carbon fractions and seven factors from temperature-resolved eight carbon fractions. The source factors (with source contribution estimates by mass concentrations in parentheses) are: combustion sulfate (46.8%), vegetative burning (15.8%), secondary sulfate (12.9%), diesel vehicle emission (10.9%), metal processing (7.5%), gasoline vehicle emission (5.6%) and soil/crustal (0.7%). Diesel and gasoline vehicle emission sources were separated using eight temperature-resolved organic and elemental carbon fractions. Application of PMF to both datasets also differentiated the sulfate rich source from the vegetative burning source, which are combined in a single factor by UNMIX modeling. Calculated ECAT and ECAD values at different locations indicated that traffic source impacts depend on factors such as traffic volumes, meteorological parameters, and the mode of vehicle operation apart from the proximity of the sites to highways. The difference in ECAT and ECAD, however, was less than one standard deviation. Thus, a cost benefit consideration should be used when deciding on the benefits of an eight or two carbon approach. Published by Elsevier B.V.

Temporally delineated sources of major chemical species in high Arctic snow

NASA Astrophysics Data System (ADS)

Macdonald, Katrina M.; Sharma, Sangeeta; Toom, Desiree; Chivulescu, Alina; Platt, Andrew; Elsasser, Mike; Huang, Lin; Leaitch, Richard; Chellman, Nathan; McConnell, Joseph R.; Bozem, Heiko; Kunkel, Daniel; Duan Lei, Ying; Jeong, Cheol-Heon; Abbatt, Jonathan P. D.; Evans, Greg J.

2018-03-01

Long-range transport of aerosol from lower latitudes to the high Arctic may be a significant contributor to climate forcing in the Arctic. To identify the sources of key contaminants entering the Canadian High Arctic an intensive campaign of snow sampling was completed at Alert, Nunavut, from September 2014 to June 2015. Fresh snow samples collected every few days were analyzed for black carbon, major ions, and metals, and this rich data set provided an opportunity for a temporally refined source apportionment of snow composition via positive matrix factorization (PMF) in conjunction with FLEXPART (FLEXible PARTicle dispersion model) potential emission sensitivity analysis. Seven source factors were identified: sea salt, crustal metals, black carbon, carboxylic acids, nitrate, non-crustal metals, and sulfate. The sea salt and crustal factors showed good agreement with expected composition and primarily northern sources. High loadings of V and Se onto Factor 2, crustal metals, was consistent with expected elemental ratios, implying these metals were not primarily anthropogenic in origin. Factor 3, black carbon, was an acidic factor dominated by black carbon but with some sulfate contribution over the winter-haze season. The lack of K+ associated with this factor, a Eurasian source, and limited known forest fire events coincident with this factor's peak suggested a predominantly anthropogenic combustion source. Factor 4, carboxylic acids, was dominated by formate and acetate with a moderate correlation to available sunlight and an oceanic and North American source. A robust identification of this factor was not possible; however, atmospheric photochemical reactions, ocean microlayer reaction, and biomass burning were explored as potential contributors. Factor 5, nitrate, was an acidic factor dominated by NO3-, with a likely Eurasian source and mid-winter peak. The isolation of NO3- on a separate factor may reflect its complex atmospheric processing, though the associated source region suggests possibly anthropogenic precursors. Factor 6, non-crustal metals, showed heightened loadings of Sb, Pb, and As, and correlation with other metals traditionally associated with industrial activities. Similar to Factor 3 and 5, this factor appeared to be largely Eurasian in origin. Factor 7, sulfate, was dominated by SO42- and MS with a fall peak and high acidity. Coincident volcanic activity and northern source regions may suggest a processed SO2 source of this factor.

Characterization of Black and Brown Carbon Concentrations and Sources during winter in Beijing

NASA Astrophysics Data System (ADS)

Yan, Caiqing; Liu, Yue; Hansen, Anthony D. A.; Močnik, Griša; Zheng, Mei

2017-04-01

Carbonaceous aerosols, including black carbon (BC) and organic carbon (OC), play important roles in air quality, human health, and climate change. A better understanding of sources of light-absorbing carbonaceous aerosol (including black carbon and brown carbon) is particular critical for formulating emission-based control strategies and reducing uncertainties in current aerosol radiative forcing estimates. Beijing, the capital of China, has experienced serious air pollution problems and high concentrations of carbonaceous aerosols in recent years, especially during heating seasons. During November and December of 2016, several severe haze episodes occurred in Beijing, with hourly average PM2.5 mass concentration up to 400 μg/m3. In this study, concentration levels and sources of black carbon and brown carbon were investigated based on 7-wavelength Aethalometer (AE-33) with combination of other PM2.5 chemical composition information. Contributions of traffic and non-traffic emissions (e.g., coal combustion, biomass burning) were apportioned, and brown carbon was separated from black carbon. Our preliminary results showed that (1) Concentrations of BC were around 5.3±4.2 μg/m3 during the study period, with distinct diurnal variations during haze and non-haze days. (2) Traffic emissions contributed to about 37±17% of total BC, and exhibited higher contributions during non-haze days compared to haze days. (3) Coal combustion was a major source of black carbon and brown carbon in Beijing, which was more significant compared to biomass burning. Sources and the relative contributions to black carbon and brown carbon during haze and non-haze days will be further discussed.

Nitrogen and carbon source-sink relationships in trees at the Himalayan treelines compared with lower elevations.

PubMed

Li, Mai-He; Xiao, Wen-Fa; Shi, Peili; Wang, San-Gen; Zhong, Yong-De; Liu, Xing-Liang; Wang, Xiao-Dan; Cai, Xiao-Hu; Shi, Zuo-Min

2008-10-01

No single hypothesis or theory has been widely accepted for explaining the functional mechanism of global alpine/arctic treeline formation. The present study tested whether the alpine treeline is determined by (1) the needle nitrogen content associated with photosynthesis (carbon gain); (2) a sufficient source-sink ratio of carbon; or (3) a sufficient C-N ratio. Nitrogen does not limit the growth and development of trees studied at the Himalayan treelines. Levels of non-structural carbohydrates (NSC) in trees were species-specific and site-dependent; therefore, the treeline cases studied did not show consistent evidence of source/carbon limitation or sink/growth limitation in treeline trees. However, results of the combined three treelines showed that the treeline trees may suffer from a winter carbon shortage. The source capacity and the sink capacity of a tree influence its tissue NSC concentrations and the carbon balance; therefore, we suggest that the persistence and development of treeline trees in a harsh alpine environment may require a minimum level of the total NSC concentration, a sufficiently high sugar:starch ratio, and a balanced carbon source-sink relationship.

High-Selectivity Electrochemical Conversion of CO 2 to Ethanol using a Copper Nanoparticle/N-Doped Graphene Electrode

DOE PAGES

Song, Yang; Peng, Rui; Hensley, Dale K.; ...

2016-09-28

Carbon dioxide is a pollutant, but also a potential carbon source provided an efficient means to convert it to useful products. Herein we report a nanostructured catalyst for the direct electrochemical reduction of dissolved CO 2 to ethanol with high Faradaic efficiency (63%) and high selectivity (84%). The catalyst is comprised of Cu nanoparticle on a highly textured, N-doped graphene film. Detailed electrochemical analysis and complementary DFT calculations indicate a novel mechanism in which multiple active sites, working sequentially, control the coupling of carbon monoxide radicals and mediate the subsequent electrochemical reduction to alcohol.

Estimates of Fossil Fuel Carbon Dioxide Emissions From Mexico at Monthly Time Intervals

NASA Astrophysics Data System (ADS)

Losey, L. M.; Andres, R. J.

2003-12-01

Human consumption of fossil fuels has greatly contributed to the rise of carbon dioxide in the Earth's atmosphere. To better understand the global carbon cycle, it is important to identify the major sources of these fossil fuels. Mexico is among the top fifteen nations in the world for producing fossil fuel carbon dioxide emissions. Based on this information and that emissions from Mexico are a focus of the North American Carbon Program, Mexico was selected for this study. Mexican monthly inland sales volumes for January 1988-May 2003 were collected on natural gas and liquid fuels from the Energy Information Agency in the United States Department of Energy. These sales figures represent a major portion of the total fossil fuel consumption in Mexico. The fraction of a particular fossil fuel consumed in a given month was determined by dividing the monthly sales volumes by the annual sum of monthly sales volumes for a given year. This fraction was then multiplied by the annual carbon dioxide values reported by the Carbon Dioxide Information Analysis Center (CDIAC) at Oak Ridge National Laboratory (ORNL) to estimate the monthly carbon dioxide emissions from the respective fuels. The advantages of this methodology are: 1) monthly fluxes are consistent with the annual flux as determined by the widely-accepted CDIAC values, and 2) its general application can be easily adapted to other nations for determining their sub-annual time scale emissions. The major disadvantage of this methodology is the proxy nature inherent to it. Only a fraction of the total emissions are used as an estimate in determining the seasonal cycle. The error inherent in this approach increases as the fraction of total emissions represented by the proxy decreases. These data are part of a long-term project between researchers at the University of North Dakota and ORNL which attempts to identify and understand the source(s) of seasonal variations of global, fossil-fuel derived, carbon dioxide emissions. Better knowledge of the temporal variation of the annual fossil fuel flux will lead to a better understanding of the global carbon cycle. This research will be archived at CDIAC for public access.

Assessment of Anaerobic Metabolic Activity and Microbial Diversity in a Petroleum-Contaminated Aquifer Using Push-Pull Tests in Combination With Molecular Tools and Stable Isotopes

NASA Astrophysics Data System (ADS)

Schroth, M. H.; Kleikemper, J.; Pombo, S. A.; Zeyer, J.

2002-12-01

In the past, studies on microbial communities in natural environments have typically focused on either their structure or on their metabolic function. However, linking structure and function is important for understanding microbial community dynamics, in particular in contaminated environments. We will present results of a novel combination of a hydrogeological field method (push-pull tests) with molecular tools and stable isotope analysis, which was employed to quantify anaerobic activities and associated microbial diversity in a petroleum-contaminated aquifer in Studen, Switzerland. Push-pull tests consisted of the injection of test solution containing a conservative tracer and reactants (electron acceptors, 13C-labeled carbon sources) into the aquifer anoxic zone. Following an incubation period, the test solution/groundwater mixture was extracted from the same location. Metabolic activities were computed from solute concentrations measured during extraction. Simultaneously, microbial diversity in sediment and groundwater was characterized by using fluorescence in situ hybridization (FISH), denaturing gradient gel electrophoresis (DGGE), as well as phospholipids fatty acid (PLFA) analysis in combination with 13C isotopic measurements. Results from DGGE analyses provided information on the general community structure before, during and after the tests, while FISH yielded information on active populations. Moreover, using 13C-labeling of microbial PLFA we were able to directly link carbon source assimilation in an aquifer to indigenous microorganisms while providing quantitative information on respective carbon source consumption.

Stable isotopic variation in tropical forest plants for applications in primatology.

PubMed

Blumenthal, Scott A; Rothman, Jessica M; Chritz, Kendra L; Cerling, Thure E

2016-10-01

Stable isotope analysis is a promising tool for investigating primate ecology although nuanced ecological applications remain challenging, in part due to the complex nature of isotopic variability in plant-animal systems. The aim of this study is to investigate sources of carbon and nitrogen isotopic variation at the base of primate food webs that reflect aspects of primate ecology. The majority of primates inhabit tropical forest ecosystems, which are dominated by C3 vegetation. We used stable isotope ratios in plants from Kibale National Park, Uganda, a well-studied closed-canopy tropical forest, to investigate sources of isotopic variation among C3 plants related to canopy stratification, leaf age, and plant part. Unpredictably, our results demonstrate that vertical stratification within the canopy does not explain carbon or nitrogen isotopic variation in leaves. Leaf age can be a significant source of isotopic variation, although the direction and magnitude of this difference is not consistent across tree species. Some plant parts are clearly differentiated in carbon and nitrogen isotopic composition, particularly leaves compared to non-photosynthetic parts such as reproductive parts and woody stem parts. Overall, variation in the isotopic composition of floral communities, plant species, and plant parts demonstrates that stable isotope studies must include analysis of local plant species and parts consumed by the primates under study from within the study area. Am. J. Primatol. 78:1041-1054, 2016. © 2015 Wiley Periodicals, Inc. © 2015 Wiley Periodicals, Inc.

Understanding the Role of the Master Regulator XYR1 in Trichoderma reesei by Global Transcriptional Analysis

PubMed Central

dos Santos Castro, Lilian; de Paula, Renato G.; Antoniêto, Amanda C. C.; Persinoti, Gabriela F.; Silva-Rocha, Rafael; Silva, Roberto N.

2016-01-01

We defined the role of the transcriptional factor—XYR1—in the filamentous fungus Trichoderma reesei during cellulosic material degradation. In this regard, we performed a global transcriptome analysis using RNA-Seq of the Δxyr1 mutant strain of T. reesei compared with the parental strain QM9414 grown in the presence of cellulose, sophorose, and glucose as sole carbon sources. We found that 5885 genes were expressed differentially under the three tested carbon sources. Of these, 322 genes were upregulated in the presence of cellulose, while 367 and 188 were upregulated in sophorose and glucose, respectively. With respect to genes under the direct regulation of XYR1, 30 and 33 are exclusive to cellulose and sophorose, respectively. The most modulated genes in the Δxyr1 belong to Carbohydrate-Active Enzymes (CAZymes), transcription factors, and transporters families. Moreover, we highlight the downregulation of transporters belonging to the MFS and ABC transporter families. Of these, MFS members were mostly downregulated in the presence of cellulose. In sophorose and glucose, the expression of these transporters was mainly upregulated. Our results revealed that MFS and ABC transporters could be new players in cellulose degradation and their role was shown to be carbon source-dependent. Our findings contribute to a better understanding of the regulatory mechanisms of XYR1 to control cellulase gene expression in T. reesei in the presence of cellulosic material, thereby potentially enhancing its application in several biotechnology fields. PMID:26909077

Understanding the Role of the Master Regulator XYR1 in Trichoderma reesei by Global Transcriptional Analysis.

PubMed

Dos Santos Castro, Lilian; de Paula, Renato G; Antoniêto, Amanda C C; Persinoti, Gabriela F; Silva-Rocha, Rafael; Silva, Roberto N

2016-01-01

We defined the role of the transcriptional factor-XYR1-in the filamentous fungus Trichoderma reesei during cellulosic material degradation. In this regard, we performed a global transcriptome analysis using RNA-Seq of the Δxyr1 mutant strain of T. reesei compared with the parental strain QM9414 grown in the presence of cellulose, sophorose, and glucose as sole carbon sources. We found that 5885 genes were expressed differentially under the three tested carbon sources. Of these, 322 genes were upregulated in the presence of cellulose, while 367 and 188 were upregulated in sophorose and glucose, respectively. With respect to genes under the direct regulation of XYR1, 30 and 33 are exclusive to cellulose and sophorose, respectively. The most modulated genes in the Δxyr1 belong to Carbohydrate-Active Enzymes (CAZymes), transcription factors, and transporters families. Moreover, we highlight the downregulation of transporters belonging to the MFS and ABC transporter families. Of these, MFS members were mostly downregulated in the presence of cellulose. In sophorose and glucose, the expression of these transporters was mainly upregulated. Our results revealed that MFS and ABC transporters could be new players in cellulose degradation and their role was shown to be carbon source-dependent. Our findings contribute to a better understanding of the regulatory mechanisms of XYR1 to control cellulase gene expression in T. reesei in the presence of cellulosic material, thereby potentially enhancing its application in several biotechnology fields.

Investigating the Formation Mechanisms and Inorganic Precursors of Formate and Acetate in Lost City Hydrothermal Fluids

NASA Astrophysics Data System (ADS)

Lang, S. Q.; Bernasconi, S. M.; Früh-Green, G.

2010-12-01

Fluids from the Lost City Hydrothermal Field are rich in hydrogen and methane, with high pHs (9 - 11), as a result of serpentinization reactions at moderate temperatures of approximately 120-200°C. It has been predicted that organic carbon compounds would form abiologically under these chemical and thermal conditions from inorganic precursors, in the form of hydrocarbons and organic acids. Previous work has demonstrated the presence of high concentrations of both formate and acetate in the Lost City fluids [Lang et al., 2010, GCA]. Formate is the second most prevalent carbon species in the fluids and may provide local microbial communities with a necessary carbon source in the face of low dissolved inorganic carbon concentrations. The goals of this study are to constrain the formation mechanisms of these organic acids (abiotic vs. biotic) and to identify their inorganic precursors. Formate and acetate were isolated from multiple fluid samples by preparative high-performance liquid chromatography for isotopic analysis. The δ13C of formate is similar to that of Lost City methane, and consistent with an abiological origin. The isotopic signature of acetate is significantly different from these values, and may be indicative of a biological source. Radiocarbon measurements of the isolated formate are in progress and should allow us to determine if the precursor carbon is derived from a mantle or deep-seawater source. Alkaline hydrothermal systems have been proposed as potential sites to the origin of life and formate has been proposed as a critical intermediate towards the kinds of reduced carbon species found in biochemistry. Evidence of an abiological formation mechanism of formate at Lost City may significantly further our understanding of prebiotic chemistry.

Genomic Reconstruction of Carbohydrate Utilization Capacities in Microbial-Mat Derived Consortia

PubMed Central

Leyn, Semen A.; Maezato, Yukari; Romine, Margaret F.; Rodionov, Dmitry A.

2017-01-01

Two nearly identical unicyanobacterial consortia (UCC) were previously isolated from benthic microbial mats that occur in a heliothermal saline lake in northern Washington State. Carbohydrates are a primary source of carbon and energy for most heterotrophic bacteria. Since CO2 is the only carbon source provided, the cyanobacterium must provide a source of carbon to the heterotrophs. Available genomic sequences for all members of the UCC provide opportunity to investigate the metabolic routes of carbon transfer between autotroph and heterotrophs. Here, we applied a subsystem-based comparative genomics approach to reconstruct carbohydrate utilization pathways and identify glycohydrolytic enzymes, carbohydrate transporters and pathway-specific transcriptional regulators in 17 heterotrophic members of the UCC. The reconstructed metabolic pathways include 800 genes, near a one-fourth of which encode enzymes, transporters and regulators with newly assigned metabolic functions resulting in discovery of novel functional variants of carbohydrate utilization pathways. The in silico analysis revealed the utilization capabilities for 40 carbohydrates and their derivatives. Two Halomonas species demonstrated the largest number of sugar catabolic pathways. Trehalose, sucrose, maltose, glucose, and beta-glucosides are the most commonly utilized saccharides in this community. Reconstructed regulons for global regulators HexR and CceR include central carbohydrate metabolism genes in the members of Gammaproteobacteria and Alphaproteobacteria, respectively. Genomics analyses were supplemented by experimental characterization of metabolic phenotypes in four isolates derived from the consortia. Measurements of isolate growth on the defined medium supplied with individual carbohydrates confirmed most of the predicted catabolic phenotypes. Not all consortia members use carbohydrates and only a few use complex polysaccharides suggesting a hierarchical carbon flow from cyanobacteria to each heterotroph. In summary, the genomics-based identification of carbohydrate utilization capabilities provides a basis for future experimental studies of carbon flow in UCC. PMID:28751880

Techniques for the conversion to carbon dioxide of oxygen from dissolved sulfate in thermal waters

USGS Publications Warehouse

Nehring, N.L.; Bowen, P.A.; Truesdell, A.H.

1977-01-01

The fractionation of oxygen isotopes between dissolved sulfate ions and water provides a useful geothermometer for geothermal waters. The oxygen isotope composition of dissolved sulfate may also be used to indicate the source of the sulfate and processes of formation. The methods described here for separation, purification and reduction of sulfate to prepare carbon dioxide for mass spectrometric analysis are modifications of methods by Rafter (1967), Mizutani (1971), Sakai and Krouse (1971), and Mizutani and Rafter (1969). ?? 1976.

Polysaccharide production by a reduced pigmentation mutant of Aureobasidium pullulans NYS-1.

PubMed

West, T P; Strohfus, B

2001-08-01

To isolate a reduced pigmentation mutant of Aureobasidium pullulans NYS-1 and characterize its cellular pigmentation plus its polysaccharide and biomass production relative to carbon source. Cellular pigmentation, polysaccharide levels and biomass production by the isolated mutant NYSRP-1 were analysed relative to carbon source. Cellular pigmentation of the mutant was lower than its parent strain using either carbon source. The mutant elaborated higher polysaccharide levels on sucrose than on corn syrup. The pullulan content of the polysaccharide synthesized and biomass production by the mutant rose as the carbon source concentration was increased. It is feasible to isolate a reduced pigmentation mutant from strain NYS-1 that exhibits elevated polysaccharide production using corn syrup as a carbon source. The mutant provides an advantage for commercial pullulan production because of its reduced pigmentation and enhanced polysaccharide synthesis.

[Kinetic simulation of enhanced biological phosphorus removal with fermentation broth as carbon source].

PubMed

Zhang, Chao; Chen, Yin-Guang

2013-07-01

As a high-quality carbon source, fermentation broth could promote the phosphorus removal efficiency in enhanced biological phosphorus removal (EBPR). The transformation of substrates in EBPR fed with fermentation broth was well simulated using the modified activated sludge model No. 2 (ASM2) based on the carbon source metabolism. When fermentation broth was used as the sole carbon source, it was found that heterotrophic bacteria acted as a promoter rather than a competitor to the phosphorus accumulating organisms (PAO). When fermentation broth was used as a supplementary carbon source of real municipal wastewater, the wastewater composition was optimized for PAO growth; and the PAO concentration, which was increased by 3.3 times compared to that in EBPR fed with solely real municipal wastewater, accounting for about 40% of the total biomass in the reactor.

Synthesis of carbon nanostructures from high density polyethylene (HDPE) and polyethylene terephthalate (PET) waste by chemical vapour deposition

NASA Astrophysics Data System (ADS)

Hatta, M. N. M.; Hashim, M. S.; Hussin, R.; Aida, S.; Kamdi, Z.; Ainuddin, AR; Yunos, MZ

2017-10-01

In this study, carbon nanostructures were synthesized from High Density Polyethylene (HDPE) and Polyethylene terephthalate (PET) waste by single-stage chemical vapour deposition (CVD) method. In CVD, iron was used as catalyst and pyrolitic of carbon source was conducted at temperature 700, 800 and 900°C for 30 minutes. Argon gas was used as carrier gas with flow at 90 sccm. The synthesized carbon nanostructures were characterized by FESEM, EDS and calculation of carbon yield (%). FESEM micrograph shows that the carbon nanostructures were only grown as nanofilament when synthesized from PET waste. The synthesization of carbon nanostructure at 700°C was produced smooth and the smallest diameter nanofilament compared to others. The carbon yield of synthesized carbon nanostructures from PET was lower from HDPE. Furthermore, the carbon yield is recorded to increase with increasing of reaction temperature for all samples. Elemental study by EDS analysis were carried out and the formation of carbon nanostructures was confirmed after CVD process. Utilization of polymer waste to produce carbon nanostructures is beneficial to ensure that the carbon nanotechnology will be sustained in future.

Pyrolytic carbon black composite and method of making the same

DOEpatents

Naskar, Amit K.; Paranthaman, Mariappan Parans; Bi, Zhonghe

2016-09-13

A method of recovering carbon black includes the step of providing a carbonaceous source material containing carbon black. The carbonaceous source material is contacted with a sulfonation bath to produce a sulfonated material. The sulfonated material is pyrolyzed to produce a carbon black containing product comprising a glassy carbon matrix phase having carbon black dispersed therein. A method of making a battery electrode is also disclosed.

Assessment of Near-Source Air Pollution at a Fine Spatial ...

EPA Pesticide Factsheets

Mobile monitoring is an emerging strategy to characterize spatially and temporally variable air pollution in areas near sources. EPA’s Geospatial Monitoring of Air Pollution (GMAP) vehicle – an all-electric vehicle measuring real-time concentrations of particulate and gaseous pollutants – was used to map air pollution levels near the Port of Charleston in South Carolina. High-resolution monitoring was performed along driving routes near several port terminals and rail yard facilities, recording geospatial coordinates and concentrations of pollutants including black carbon, size-resolved particle count ranging from ultrafine to coarse (6 nm to 20 um), carbon monoxide, carbon dioxide, and nitrogen dioxide. Additionally, a portable meteorological station was used to characterize local conditions. The primary objective of this work is to characterize the impact of port facilities on local scale air quality. It is found that elevated concentration measurements of Black Carbon and PM correlate to periods of increased port activity and a significant elevation in concentration is observed downwind of ports. However, limitations in study design prevent a more complete analysis of the port effect. As such, we discuss the ways in which this study is limited and how future work could be improved. Mobile monitoring is an emerging strategy to characterize spatially and temporally variable air pollution in areas near sources. EPA’s Geospatial Monitoring of Air Pollut

Source apportionment of elevated wintertime PAHs by compound-specific radiocarbon analysis

NASA Astrophysics Data System (ADS)

Sheesley, R. J.; Kruså, M.; Krecl, P.; Johansson, C.; Gustafsson, Ã.-.

2008-12-01

Natural abundance radiocarbon analysis facilitates distinct source apportionment between contemporary biomass/biofuel (14C "alive") versus fossil fuel (14C "dead") combustion. Here, the first compound-specific radiocarbon analysis (CSRA) of atmospheric polycylic aromatic hydrocarbons (PAHs) was demonstrated for a set of samples collected in Lycksele, Sweden a small town with frequent episodes of severe atmospheric pollution in the winter. Renewed interest in residential wood combustion means than this type of seasonal pollution is of increasing concern in many areas. Five individual/paired PAH isolates from three pooled fortnight-long filter collections were analyzed by CSRA: phenanthrene, fluoranthene, pyrene, benzo[b+k]fluoranthene and indeno[cd]pyrene plus benzo[ghi]perylene; phenanthrene was the only compound also analyzed in the gas phase. The measured Δ14C for PAHs spanned from -138.3‰ to 58.0‰. A simple isotopic mass balance model was applied to estimate the fraction biomass (fbiomass) contribution that was constrained to a range of 71% for indeno[cd]pyrene+benzo[ghi]perylene to 87% for the gas phase phenanthrene and particulate fluoranthene, respectively. Indeno[cd]pyrene plus benzo[ghi]perylene, known to be enhanced in gasoline-powered motor vehicle exhaust compared to diesel exhaust, had the lowest contribution of biomass combustion of the measured PAHs by 9%. The total organic carbon (TOC, defined as carbon remaining after removal of inorganic carbon) fbiomass was estimated to be 77%, which falls within the range for PAHs. This CSRA data of atmospheric PAHs demonstrate the non-uniformity of biomass combustion contribution to different PAHs even in a location with limited local emission sources and illustrates that regulatory efforts would not evenly reduce all PAHs.

Urban impacts on regional carbonaceous aerosols: case study in central Texas.

PubMed

Barrett, Tate E; Sheesley, Rebecca J

2014-08-01

Rural and background sites provide valuable information on the concentration and optical properties of organic, elemental, and water-soluble organic carbon (OC, EC, and WSOC), which are relevant for understanding the climate forcing potential of regional atmospheric aerosols. To quantify climate- and air quality-relevant characteristics of carbonaceous aerosol in the central United States, a regional background site in central Texas was chosen for long-term measurement. Back trajectory (BT) analysis, ambient OC, EC, and WSOC concentrations and absorption parameters are reported for the first 15 months of a long-term campaign (May 2011-August 2012). BT analysis indicates consistent north-south airflow connecting central Texas to the Central Plains. Central Texas aerosols exhibited seasonal trends with increased fine particulate matter (< 2.5 microm aerodynamic diameter, PM2.5) and OC during the summer (PM2.5 = 10.9 microg m(-3) and OC = 3.0 microg m(-3)) and elevated EC during the winter (0.22 microg m(-3)). When compared to measurements in Dallas and Houston, TX, central Texas OC appears to have mixed urban and rural sources. However central Texas EC appears to be dominated by transport of urban emissions. WSOC averaged 63% of the annual OC, with little seasonal variability in this ratio. To monitor brown carbon (BrC), absorption was measured for the aqueous WSOC extracts. Light absorption coefficients for EC and BrC were highest during summer (EC MAC = 11 m2 g(-1) and BRC MAE365 = 0.15 m2 g(-1)). Results from optical analysis indicate that regional aerosol absorption is mostly due to EC with summertime peaks in BrC attenuation. This study represents the first reported values of WSOC absorption, MAE365, for the central United States. Implications: Background concentration and absorption measurements are essential in determining regional potential radiative forcing due to atmospheric aerosols. Back trajectory, chemical, and optical analysis of PM2.5 was used to determine climatic and air quality implications of urban outflow to a regional receptor site, representative of the central United States. Results indicate that central Texas organic carbon has mixed urban and rural sources, while elemental carbon is controlled by the transport of urban emissions. Analysis of aerosol absorption showed black carbon as the dominant absorber, with less brown carbon absorption than regional studies in California and the southeastern United States.

Cultivation of Chlorella vulgaris using different sources of carbon and its impact on lipid production

NASA Astrophysics Data System (ADS)

Fransiscus, Yunus; Purwanto, Edy

2017-05-01

A cultivation process of Chlorella vulgaris has been done in different treatment to investigate the optimum condition for lipid production. Firstly, autotroph and heterotroph condition have been applied to test the significance impact of carbon availability to the growth and lipid production of Chlorella vulgaris. And for the same purpose, heterotroph condition using glucose, fructose and sucrose as carbon sources was independently implemented. The growth rate of Chlorella vulgaris in autotroph condition was much slower than those in heterotroph. The different sources of carbon gave no significant different in the growth pattern, but in term of lipid production it was presented a considerable result. At lower concentration (3 and 6 gr/L) of carbon sources there was only slight different in lipid production level. At higher concentration (12 gr/L) glucose as a carbon source produced the highest result, 60.18% (w/w) compared to fructose and sucrose that produced 27.34% (w/w) and 18.19% (w/w) respectively.

The roles of inoculants' carbon source use in the biocontrol of potato scab disease.

PubMed

Sun, Pingping; Zhao, Xinbei; Shangguan, Nini; Chang, Dongwei; Ma, Qing

2015-04-01

Despite the application of multiple strains in the biocontrol of plant diseases, multistrain inoculation is still constrained by its inconsistency in the field. Nutrients, especially carbons, play an important role in the biocontrol processes. However, little work has been done on the systematic estimation of inoculants' carbon source use on biocontrol efficacies in vivo. In the present study, 7 nonpathogenic Streptomyces strains alone and in different combinations were inoculated as biocontrol agents against the potato scab disease, under field conditions and greenhouse treatments. The influence of the inoculants' carbon source use properties on biocontrol efficacies was investigated. The results showed that increasing the number of inoculated strains did not necessarily result in greater biocontrol efficacy in vivo. However, single strains with higher growth rates or multiple strains with less carbon source competition had positive effects on the biocontrol efficacies. These findings may shed light on optimizing the consistent biocontrol of plant disease with the consideration of inoculants' carbon source use properties.

Double Carbon Nano Coating of LiFePO4 Cathode Material for High Performance of Lithium Ion Batteries.

PubMed

Ding, Yan-Hong; Huang, Guo-Long; Li, Huan-Huan; Xie, Hai-Ming; Sun, Hai-Zhu; Zhang, Jing-Ping

2015-12-01

Double carbon-coated LiFePO4 (D-LiFePO4/C) composite with sphere-like structure was synthesized through combination of co-precipitation and solid-state methods. Cetyl-trimethyl-ammonium bromide (CTAB) and citric acid served as two kinds of carbon sources in sequence. SEM images demonstrated that double carbon coating had certain influence on the morphology. The thickness of carbon coating on D-LiFePO4/C was about 1.7 nm and the content of carbon was 2.48 wt%, according to HRTEM and TG analysis. The electrochemical impedance spectroscopy analysis indicated that the D-LiFePO4/C composite presented the charge-transfer resistance of 68 Ω and Li ion diffusion coefficient of 2.68 x 10(-13) cm2 S(-1), while the single carbon-coated LiFePO4 (S-LiFePO4/C) exhibited 135.5Ω and 4.03 x 10(-14) cm2 S(-1). Especially, the prepared D-LiFePO4/C electrode showed discharge capacities of 102.9 (10C) and 87.1 (20C) mA h g(-1), respectively, with almost no capacity lost after 400 cycles at 10C, which were much better than those of S-LiFePO4/C composite.

Influence of electron donors and copper concentration on geochemical and mineralogical processes under conditions of biological sulphate reduction

NASA Astrophysics Data System (ADS)

Wolicka, Dorota; Borkowski, Andrzej

2014-03-01

Sulphidogenous microorganism communities were isolated from soil polluted by crude oil. The study was focused on determining the influence of 1) copper (II) concentration on the activity of selected microorganism communities and 2) the applied electron donor on the course and evolution of mineral-forming processes under conditions favouring growth of sulphate-reducing bacteria (SRB). The influence of copper concentration on the activity of selected microorganism communities and the type of mineral phases formed was determined during experiments in which copper (II) chloride at concentrations of 0.1, 0.2, 0.5 and 0.7 g/L was added to SRB cultures. The experiments were performed in two variants: with ethanol (4 g/L) or lactate (4 g/L) as the sole carbon source. In order to determine the taxonomic composition of the selected microorganism communities, the 16S rRNA method was used. Results of this analysis confirmed the presence of Desulfovibrio, Desulfohalobium, Desulfotalea, Thermotoga, Solibacter, Gramella, Anaeromyxobacter and Myxococcus sp. in the stationary cultures. The post-culture sediments contained covelline (CuS) and digenite (Cu9S5 ). Based on the results, it can be stated that the type of carbon source applied during incubation plays a crucial role in determining the mineral composition of the post-culture sediments. Thus, regardless of the amount of copper ion introduced to a culture with lactate as the sole carbon source, no copper sulphide was observed in the post-culture sediments. Cultures with ethanol as the sole carbon source, on the other hand, yielded covelline or digenite in all post-culture sediments.

USE OF FATTY ACID STABLE CARBON ISOTOPE RATIO TO INDICATE MICROBIAL CARBON SOURCE IN TROPICAL SOILS

EPA Science Inventory

We use measurements of the concentration and stable carbon isotope ratio of individual microbial phospholipid fatty acids (PLFAs) in soils as indicators of live microbial biomass levels, broad microbial community structure, and microbial carbon source. For studies of soil o...

Flux Of Carbon from an Airborne Laboratory (FOCAL): Synergy of airborne and surface measures of carbon emission and isotopologue content from tundra landscape in Alaska

NASA Astrophysics Data System (ADS)

Dobosy, R.; Dumas, E.; Sayres, D. S.; Kochendorfer, J.

2013-12-01

Arctic tundra, recognized as a potential major source of new atmospheric carbon, is characterized by low topographic relief and small-scale heterogeneity consisting of small lakes and intervening tundra vegetation. This fits well the flux-fragment method (FFM) of analysis of data from low-flying aircraft. The FFM draws on 1)airborne eddy-covariance flux measurements, 2)a classified surface-characteristics map (e.g. open water vs tundra), 3)a footprint model, and 4)companion surface-based eddy-covariance flux measurements. The FOCAL, a collaboration among Harvard University's Anderson Group, NOAA's Atmospheric Turbulence and Diffusion Division (ATDD), and Aurora Flight Sciences, Inc., made coordinated flights in 2013 August with a collaborating surface site. The FOCAL gathers not only flux data for CH4 and CO2 but also the corresponding carbon-isotopologue content of these gases. The surface site provides a continuous sample of carbon flux from interstitial tundra over time throughout the period of the campaign. The FFM draws samples from the aircraft data over many instances of tundra and also open water. From this we will determine how representative the surface site is of the larger area (100 km linear scale), and how much the open water differs from the tundra as a source of carbon.

Estimating national forest carbon stocks and dynamics: combining models and remotely sensed information

NASA Astrophysics Data System (ADS)

Smallman, Thomas Luke; Exbrayat, Jean-François; Bloom, Anthony; Williams, Mathew

2017-04-01

Forests are a critical component of the global carbon cycle, storing significant amounts of carbon, split between living biomass and dead organic matter. The carbon budget of forests is the most uncertain component of the global carbon cycle - it is currently impossible to quantify accurately the carbon source/sink strength of forest biomes due to their heterogeneity and complex dynamics. It has been a major challenge to generate robust carbon budgets across landscapes due to data scarcity. Models have been used for estimating carbon budgets, but outputs have lacked an assessment of uncertainty, making a robust assessment of their reliability and accuracy challenging. Here a Metropolis Hastings - Markov Chain Monte Carlo (MH-MCMC) data assimilation framework has been used to combine remotely sensed leaf area index (MODIS), biomass (where available) and deforestation estimates, in addition to forest planting information from the UK's national forest inventory, an estimate of soil carbon from the Harmonized World Database (HWSD) and plant trait information with a process model (DALEC) to produce a constrained analysis with a robust estimate of uncertainty of the UK forestry carbon budget between 2000 and 2010. Our analysis estimates the mean annual UK forest carbon sink at -3.9 MgC ha-1 yr-1 with a 95 % confidence interval between -4.0 and -3.1 MgC ha-1yr-1. The UK national forest inventory (NFI) estimates the mean UK forest carbon sink to be between -1.4 and -5.5 MgC ha-1 yr-1. The analysis estimate for total forest biomass stock in 2010 is estimated at 229 (177/232) TgC, while the NFI an estimated total forest biomass carbon stock of 216 TgC. Leaf carbon area (LCA) is a key plant trait which we are able to estimate using our analysis. Comparison of median estimates for (LCA) retrieved from the analysis and a UK land cover map show higher and lower values for LCA are estimated areas dominated by needle leaf and broad leaf forests forest respectively, consistent with ecological expectations. Moreover, LCA is positively and negatively correlated with leaf-life span and allocation of photosynthate to foliage respectively, supported by field observations. This emergence of key plant traits and correlations between traits increases our confidence in the robustness of this analysis. Furthermore, this framework also allows us to search for additional emergent properties from the analysis such as spatial variation of retrieved drought tolerance. Finally our analysis is able to identify components of the carbon cycle with the largest uncertainty e.g. allocation of photosynthate to wood and wood residence times, providing targets for future observations (e.g. ESA's BIOMASS mission). Our Bayesian analysis system is ideally suited for assimilation of multiple biomass estimates and their associated uncertainties to reduce both the overall analysis uncertainty and bias in estimates biomass stocks.

Rapid hydrothermal flow synthesis and characterisation of carbonate- and silicate-substituted calcium phosphates

PubMed Central

Knowles, Jonathan C; Rehman, Ihtesham; Darr, Jawwad A

2013-01-01

A range of crystalline and nano-sized carbonate- and silicate-substituted hydroxyapatite has been successfully produced by using continuous hydrothermal flow synthesis technology. Ion-substituted calcium phosphates are better candidates for bone replacement applications (due to improved bioactivity) as compared to phase-pure hydroxyapatite. Urea was used as a carbonate source for synthesising phase pure carbonated hydroxyapatite (CO3-HA) with ≈5 wt% substituted carbonate content (sample 7.5CO3-HA) and it was found that a further increase in urea concentration in solution resulted in biphasic mixtures of carbonate-substituted hydroxyapatite and calcium carbonate. Transmission electron microscopy images revealed that the particle size of hydroxyapatite decreased with increasing urea concentration. Energy-dispersive X-ray spectroscopy result revealed a calcium deficient apatite with Ca:P molar ratio of 1.45 (±0.04) in sample 7.5CO3-HA. For silicate-substituted hydroxyapatite (SiO4-HA) silicon acetate was used as a silicate ion source. It was observed that a substitution threshold of ∼1.1 wt% exists for synthesis of SiO4-HA in the continuous hydrothermal flow synthesis system, which could be due to the decreasing yields with progressive increase in silicon acetate concentration. All the as-precipitated powders (without any additional heat treatments) were analysed using techniques including Transmission electron microscopy, X-ray powder diffraction, Differential scanning calorimetry, Thermogravimetric analysis, Raman spectroscopy and Fourier transform infrared spectroscopy. PMID:22983020

In-filled reservoirs serving as sediment archives to analyse soil organic carbon erosion - Taking a closer look at the Karoo rangelands

NASA Astrophysics Data System (ADS)

Krenz, Juliane; Greenwood, Philip; Kuhn, Brigitte; Heckrath, Goswin; Foster, Ian; Boardman, John; Meadows, Michael; Kuhn, Nikolaus

2016-04-01

The semi-arid rangelands of the Great Karoo region in South Africa, which are nowadays characterized by badlands on the foot slopes of upland areas and complex gully systems in valley bottoms, have experienced a number of environmental changes. With the settlement of European farmers in the late 18th century agricultural activities increased, leading to overgrazing which probably acted as a trigger to land degradation. As a consequence of higher water demands and shifting rainfall patterns, many dams and small reservoirs have been constructed to provide drinking water for cattle or to facilitate irrigation during dry periods. Most of these dams are now filled with sediment and many have become breached, revealing sediment archives that can be used to analyse land use changes as well as carbon erosion and deposition during the last ca. 100 years. In this ongoing project, a combination of analytical methods that include drone imagery, landscape mapping, erosion modelling and sediment analysis have been employed to trace back the sediment origin and redistribution within the catchment, setting a special focus on the carbon history. Sediment deposits from a silted-up reservoir were analysed for varying physicochemical parameters, in order to analyse erosional and depositional patterns. A sharp decrease in total carbon content with decreasing depth suggests that land degradation during and after the post-European settlement most likely triggered erosion of the relatively fertile surface soils which presumably in-filled the reservoirs. It is assumed that the carbon-rich bottom layers of the dam deposits originate from these eroded surface soils. A combination of erosion modelling and sediment analysis will be used to determine the source areas of the depositional material and might clarify the question if land degradation in the Karoo has resulted in its return from being a net sink of carbon into a net source of carbon.

NMOC, ozone, and organic aerosol in the southeastern United States, 1999-2007: 3. Origins of organic aerosol in Atlanta, Georgia, and surrounding areas

NASA Astrophysics Data System (ADS)

Blanchard, C. L.; Hidy, G. M.; Tanenbaum, S.; Edgerton, E. S.

2011-02-01

Carbonaceous compounds constitute a major fraction of the fine particle mass at locations throughout North America; much of the condensed-phase organic carbon (OC) is produced in the atmosphere from NMOC reactions as "secondary" OC (SOC). Ten years of particulate carbon and speciated non-methane organic compound (NMOC) data combined with other measurements from Southeastern Aerosol Research and Characterization (SEARCH) and other sites provide insight into the association between elemental carbon (EC), OC and NMOCs. Data are analyzed to characterize the OC and SOC contrasts between urban Atlanta, Georgia, and nearby non-urban conditions in the Southeast. Analysis of the monitoring record indicates that the mean Atlanta urban excess of total carbon (TC) is 2.1-2.8 μg m -3. The OC/EC ratio of the Atlanta urban excess is in the range 1.3 to 1.8, consistent with OC/EC ratios observed in motor vehicle emissions and a fossil carbon source of urban excess TC. Carbon isotope analysis of a subset of particle samples demonstrates that the urban excess is mainly fossil in origin, even though the majority of the TC is modern at both urban and non-urban sites. Temperature-dependent partitioning of OC between gas and condensed phases cannot explain the observed diurnal and seasonal variations of OC/CO, EC/CO, and OC/EC ratios. Alternatively, a hypothesis involving vertical mixing of OC-enriched air from aloft is supported by the seasonal and diurnal OC, isopentane, aromatic and isoprene observations at the ground. A statistical model is applied to indicate the relative significance of aerometric factors affecting OC and EC concentrations, including meteorological and pollutant associations. The model results demonstrate strong linkages between fine particle carbon and pollutant indicators of source emissions compared with meteorological factors; the model results show weaker dependence of OC on meteorological factors than is the case for ozone (O 3) concentrations.

IMPROVING SOURCE PROFILES AND APPORTIONMENT OF COMBUSTION SOURCES USING THERMAL CARBON FRACTIONS IN MULTIVARIATE RECEPTOR MODELS

EPA Science Inventory

The purpose of this study was to improve combustion source profiles and apportionment of a PM2.5 urban aerosol by using 7 individual organic and elemental carbon thermal fractions in place of total organic and elemental carbon. This study used 3 years (96-99) of speciated data...

The Effect of Carbon Source and Fluoride Concentrations in the "Streptococcus Mutans" Biofilm Formation

ERIC Educational Resources Information Center

Paulino, Tony P.; Andrade, Ricardo O.; Bruschi-Thedei, Giuliana C. M.; Thedei, Geraldo, Jr.; Ciancaglini, Pietro

2004-01-01

The main objective of this class experiment is to show the influence of carbon source and of different fluoride concentrations on the biofilm formation by the bacterium "Streptococcus mutans." The observation of different biofilm morphology as a function of carbon source and fluoride concentration allows an interesting discussion regarding the…

Fractal and spectroscopic analysis of soot from internal combustion engines

NASA Astrophysics Data System (ADS)

Swapna, M. S.; Saritha Devi, H. V.; Raj, Vimal; Sankararaman, S.

2018-03-01

Today diesel engines are used worldwide for various applications and very importantly in transportation. Hydrocarbons are the most widespread precursors among carbon sources employed in the production of carbon nanotubes (CNTs). The aging of internal combustion engine is an important parameter in deciding the carbon emission and particulate matter due to incomplete combustion of fuel. In the present work, an attempt has been made for the effective utilization of the aged engines for potential applicationapplications in fuel cells and nanoelectronics. To analyze the impact of aging, the particulate matter rich in carbon content areis collected from diesel engines of different ages. The soot with CNTs is purified by the liquid phase oxidation method and analyzed by Field Emission Scanning Electron Microscopy, High-Resolution Transmission Electron Microscopy, Energy Dispersive Spectroscopy, UV-Visible spectroscopy, Raman spectroscopy and Thermogravimetric analysis. The SEM image contains self-similar patterns probing fractal analysis. The fractal dimensions of the samples are determined by the box counting method. We could find a greater amount of single-walled carbon nanotubes (SWCNTs) in the particulate matter emitted by aged diesel engines and thereby giving information about the combustion efficiency of the engine. The SWCNT rich sample finds a wide range of applicationapplications in nanoelectronics and thereby pointing a potential use of these aged engines.

MIL-100 derived nitrogen-embodied carbon shells embedded with iron nanoparticles

NASA Astrophysics Data System (ADS)

Mao, Chengyu; Kong, Aiguo; Wang, Yuan; Bu, Xianhui; Feng, Pingyun

2015-06-01

The use of metal-organic frameworks (MOFs) as templates and precursors to synthesize new carbon materials with controllable morphology and pre-selected heteroatom doping holds promise for applications as efficient non-precious metal catalysts. Here, we report a facile pyrolysis pathway to convert MIL-100 into nitrogen-doped carbon shells encapsulating Fe nanoparticles in a comparative study involving multiple selected nitrogen sources. The hierarchical porous architecture, embedded Fe nanoparticles, and nitrogen decoration endow this composite with a superior oxygen reduction activity. Furthermore, the excellent durability and high methanol tolerance even outperform the commercial Pt-C catalyst.The use of metal-organic frameworks (MOFs) as templates and precursors to synthesize new carbon materials with controllable morphology and pre-selected heteroatom doping holds promise for applications as efficient non-precious metal catalysts. Here, we report a facile pyrolysis pathway to convert MIL-100 into nitrogen-doped carbon shells encapsulating Fe nanoparticles in a comparative study involving multiple selected nitrogen sources. The hierarchical porous architecture, embedded Fe nanoparticles, and nitrogen decoration endow this composite with a superior oxygen reduction activity. Furthermore, the excellent durability and high methanol tolerance even outperform the commercial Pt-C catalyst. Electronic supplementary information (ESI) available: Material synthesis and elemental analysis, electrochemistry measurements, and additional figures. See DOI: 10.1039/c5nr02346g

Evaluating the efficiency of carbon utilisation via bioenergetics between biological aerobic and denitrifying phosphorus removal systems

PubMed Central

Jin, Zhan; He, Yin; Xu, Xuan; Zheng, Xiang-yong

2017-01-01

There are two biological systems available for removing phosphorus from waste water, conventional phosphorus removal (CPR) and denitrifying phosphorus removal (DPR) systems, and each is characterized by the type of sludge used in the process. In this study, we compared the characteristics associated with the efficiency of carbon utilization between CPR and DPR sludge using acetate as a carbon source. For DPR sludge, the heat emitted during the phosphorus release and phosphorus uptake processes were 45.79 kJ/mol e- and 84.09 kJ/mol e-, respectively. These values were about 2 fold higher than the corresponding values obtained for CPR sludge, suggesting that much of the energy obtained from the carbon source was emitted as heat. Further study revealed a smaller microbial mass within the DPR sludge compared to CPR sludge, as shown by a lower sludge yield coefficient (0.05 gVSS/g COD versus 0.36 gVSS/g COD), a result that was due to the lower energy capturing efficiency of DPR sludge according to bioenergetic analysis. Although the efficiency of anoxic phosphorus removal was only 39% the efficiency of aerobic phosphorus removal, the consumption of carbon by DPR sludge was reduced by 27.8% compared to CPR sludge through the coupling of denitrification with dephosphatation. PMID:29065157

Fates of eroded soil organic carbon: Mississippi Basin case study

USGS Publications Warehouse

Smith, S.V.; Sleezer, R.O.; Renwick, W.H.; Buddemeier, R.W.

2005-01-01

We have developed a mass balance analysis of organic carbon (OC) across the five major river subsystems of the Mississippi (MS) Basin (an area of 3.2 ?? 106 km2). This largely agricultural landscape undergoes a bulk soil erosion rate of ???480 t??km -2??yr-1 (???1500 ?? 106 t/yr, across the MS Basin), and a soil organic carbon (SOC) erosion rate of ???7 t??km-2??yr-1 (???22 ?? 106 t/yr). Erosion translocates upland SOC to alluvial deposits, water impoundments, and the ocean. Soil erosion is generally considered to be a net source of CO2 release to the atmosphere in global budgets. However, our results indicate that SOC erosion and relocation of soil apparently can reduce the net SOC oxidation rate of the original upland SOC while promoting net replacement of eroded SOC in upland soils that were eroded. Soil erosion at the MS Basin scale is, therefore, a net CO2 sink rather than a source. ?? 2005 by the Ecological Society of America.

RADIOCARBON ANALYSIS OF PM 2.5 AMBIENT AEROSOL

EPA Science Inventory

The radiocarbon (14C) content of an ambient aerosol sample can be directly related to the fraction of the sample's total carbon mass contributed by natural (biogenic) sources. Such knowledge is difficult to determine by other means, and important for devising ambient PM contro...

Constraining parameters of the neutron star in the supernova remnant HESS J1731-347

NASA Astrophysics Data System (ADS)

Klochkov, D.; Suleimanov, V.; Puehlhofer, G.; Werner, K.; Santangelo, A.

2014-07-01

The Central Compact Object (CCO) in HESS J1731-347, presumably a neutron star, is one of the brightest sources in this class. Like other CCOs, it potentially provides an "undisturbed" view of thermal radiation generated at the neutron star surface. The shape and normalization of the corresponding X-ray spectrum depends on the emitting area, surface redshift, and gravity acceleration. Thus, its modeling under certain assumptions allows the mass and radius of the neutron star to be constrained. In our analysis, we model the spectrum of the CCO accumulated with XMM-Newton over ˜100 ksec exposure time in three observations. The exposure time has increased by a factor of five since our previous analysis of the source. For the spectral fitting, we use our hydrogen and carbon atmosphere models calculated assuming hydrostatic and radiative equilibria and taking into account pressure ionization and the presence of spectral lines (in case of carbon). We present the resulting constraints on the mass, radius, distance, and temperature of the neutron star.

Flux balance analysis of different carbon source fermentation with hydrogen producing Clostridium butyricum using Cell Net Analyzer.

PubMed

Rafieenia, Razieh; Chaganti, Subba Rao

2015-01-01

A metabolic network model for Clostridium butyricum was developed using six different carbon sources (sucrose, fructose, galactose, mannose, trehalose and ribose) to study the fermentative H2 production. The model was used for investigation of H2 production and the ability of growth on different substrates to predict the maximum abilities for fermentative H2 production that each substrate can support. NADH fluxes were calculated by the model as an important cofactor affecting on H2 production. Butyrate and acetate production were used as model assumptions and biomass formation was chosen as the objective function for flux analysis calculations. Among the substrates selected, sucrose and trehalose supported the maximum growth and H2 yields. The Cell Net Analyzer metabolic network model developed for H2 estimation revealed good correlation with experimental data and could be further used to study the effect of environmental conditions and substrates concentration on H2 yield. Copyright © 2014 Elsevier Ltd. All rights reserved.

Balloon-Borne Full-Column Greenhouse Gas Profiling Field Campaign Report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fischer, Marc L

The vertical distributions of CO2, CH4, and other gases provide important constraints for the determination of terrestrial and ocean sources and sinks of carbon and other biogeochemical processes in the Earth system. The DOE Biological and Environmental Research Program (DOE-BER) and the NOAA Earth System Research Laboratory (NOAA-ESRL) collaborate to quantify the vertically resolved distribution of atmospheric carbon-cycle gases (CO2, and CH4) within approximately 99% of the atmospheric column at the DOE ARM Southern Great Plains Facility in Oklahoma. In 2015, flights were delayed while research at NOAA focused on evaluating sources of systematic errors in the gas collection andmore » analysis system and modifying the sampling system to provide duplicate air samples in a single flight package. In 2017, we look forward to proposing additional sampling and analysis at ARM-SGP (and other sites) that characterize the vertical distribution of CO2 and CH4 over time and space.« less

Carbon Catabolite Repression and Impranil Polyurethane Degradation in Pseudomonas protegens Strain Pf-5.

PubMed

Hung, Chia-Suei; Zingarelli, Sandra; Nadeau, Lloyd J; Biffinger, Justin C; Drake, Carrie A; Crouch, Audra L; Barlow, Daniel E; Russell, John N; Crookes-Goodson, Wendy J

2016-10-15

Polyester polyurethane (PU) coatings are widely used to help protect underlying structural surfaces but are susceptible to biological degradation. PUs are susceptible to degradation by Pseudomonas species, due in part to the degradative activity of secreted hydrolytic enzymes. Microorganisms often respond to environmental cues by secreting enzymes or secondary metabolites to benefit their survival. This study investigated the impact of exposing several Pseudomonas strains to select carbon sources on the degradation of the colloidal polyester polyurethane Impranil DLN (Impranil). The prototypic Pseudomonas protegens strain Pf-5 exhibited Impranil-degrading activities when grown in sodium citrate but not in glucose-containing medium. Glucose also inhibited the induction of Impranil-degrading activity by citrate-fed Pf-5 in a dose-dependent manner. Biochemical and mutational analyses identified two extracellular lipases present in the Pf-5 culture supernatant (PueA and PueB) that were involved in degradation of Impranil. Deletion of the pueA gene reduced Impranil-clearing activities, while pueB deletion exhibited little effect. Removal of both genes was necessary to stop degradation of the polyurethane. Bioinformatic analysis showed that putative Cbr/Hfq/Crc-mediated regulatory elements were present in the intergenic sequences upstream of both pueA and pueB genes. Our results confirmed that both PueA and PueB extracellular enzymes act in concert to degrade Impranil. Furthermore, our data showed that carbon sources in the growth medium directly affected the levels of Impranil-degrading activity but that carbon source effects varied among Pseudomonas strains. This study uncovered an intricate and complicated regulation of P. protegens PU degradation activity controlled by carbon catabolite repression. Polyurethane (PU) coatings are commonly used to protect metals from corrosion. Microbiologically induced PU degradation might pose a substantial problem for the integrity of these coatings. Microorganisms from diverse genera, including pseudomonads, possess the ability to degrade PUs via various means. This work identified two extracellular lipases, PueA and PueB, secreted by P. protegens strain Pf-5, to be responsible for the degradation of a colloidal polyester PU, Impranil. This study also revealed that the expression of the degradative activity by strain Pf-5 is controlled by glucose carbon catabolite repression. Furthermore, this study showed that the Impranil-degrading activity of many other Pseudomonas strains could be influenced by different carbon sources. This work shed light on the carbon source regulation of PU degradation activity among pseudomonads and identified the polyurethane lipases in P. protegens. Copyright © 2016, American Society for Microbiology. All Rights Reserved.

Carbon Catabolite Repression and Impranil Polyurethane Degradation in Pseudomonas protegens Strain Pf-5

PubMed Central

Hung, Chia-Suei; Zingarelli, Sandra; Nadeau, Lloyd J.; Biffinger, Justin C.; Drake, Carrie A.; Crouch, Audra L.; Barlow, Daniel E.; Russell, John N.

2016-01-01

ABSTRACT Polyester polyurethane (PU) coatings are widely used to help protect underlying structural surfaces but are susceptible to biological degradation. PUs are susceptible to degradation by Pseudomonas species, due in part to the degradative activity of secreted hydrolytic enzymes. Microorganisms often respond to environmental cues by secreting enzymes or secondary metabolites to benefit their survival. This study investigated the impact of exposing several Pseudomonas strains to select carbon sources on the degradation of the colloidal polyester polyurethane Impranil DLN (Impranil). The prototypic Pseudomonas protegens strain Pf-5 exhibited Impranil-degrading activities when grown in sodium citrate but not in glucose-containing medium. Glucose also inhibited the induction of Impranil-degrading activity by citrate-fed Pf-5 in a dose-dependent manner. Biochemical and mutational analyses identified two extracellular lipases present in the Pf-5 culture supernatant (PueA and PueB) that were involved in degradation of Impranil. Deletion of the pueA gene reduced Impranil-clearing activities, while pueB deletion exhibited little effect. Removal of both genes was necessary to stop degradation of the polyurethane. Bioinformatic analysis showed that putative Cbr/Hfq/Crc-mediated regulatory elements were present in the intergenic sequences upstream of both pueA and pueB genes. Our results confirmed that both PueA and PueB extracellular enzymes act in concert to degrade Impranil. Furthermore, our data showed that carbon sources in the growth medium directly affected the levels of Impranil-degrading activity but that carbon source effects varied among Pseudomonas strains. This study uncovered an intricate and complicated regulation of P. protegens PU degradation activity controlled by carbon catabolite repression. IMPORTANCE Polyurethane (PU) coatings are commonly used to protect metals from corrosion. Microbiologically induced PU degradation might pose a substantial problem for the integrity of these coatings. Microorganisms from diverse genera, including pseudomonads, possess the ability to degrade PUs via various means. This work identified two extracellular lipases, PueA and PueB, secreted by P. protegens strain Pf-5, to be responsible for the degradation of a colloidal polyester PU, Impranil. This study also revealed that the expression of the degradative activity by strain Pf-5 is controlled by glucose carbon catabolite repression. Furthermore, this study showed that the Impranil-degrading activity of many other Pseudomonas strains could be influenced by different carbon sources. This work shed light on the carbon source regulation of PU degradation activity among pseudomonads and identified the polyurethane lipases in P. protegens. PMID:27496773

Effect of CO2 on NADH production of denitrifying microbes via inhibiting carbon source transport and its metabolism.

PubMed

Wan, Rui; Chen, Yinguang; Zheng, Xiong; Su, Yinglong; Huang, Haining

2018-06-15

The potential effect of CO 2 on environmental microbes has drawn much attention recently. As an important section of the nitrogen cycle, biological denitrification requires electron donor to reduce nitrogen oxide. Nicotinamide adenine dinucleotide (NADH), which is formed during carbon source metabolism, is a widely reported electron donor for denitrification. Here we studied the effect of CO 2 on NADH production and carbon source utilization in the denitrifying microbe Paracoccus denitrificans. We observed that NADH level was decreased by 45.5% with the increase of CO 2 concentration from 0 to 30,000ppm, which was attributed to the significantly decreased utilization of carbon source (i.e., acetate). Further study showed that CO 2 inhibited carbon source utilization because of multiple negative influences: (1) suppressing the growth and viability of denitrifier cells, (2) weakening the driving force for carbon source transport by decreasing bacterial membrane potential, and (3) downregulating the expression of genes encoding key enzymes involved in intracellular carbon metabolism, such as citrate synthase, aconitate hydratase, isocitrate dehydrogenase, succinate dehydrogenase, and fumarate reductase. This study suggests that the inhibitory effect of CO 2 on NADH production in denitrifiers might deteriorate the denitrification performance in an elevated CO 2 climate scenario. Copyright © 2018 Elsevier B.V. All rights reserved.

The application of carbon-14 analyses to the source apportionment of atmospheric carbonaceous particulate matter: a review.

PubMed

Heal, Mathew R

2014-01-01

Organic carbon (OC) and elemental carbon (EC) together constitute a substantial proportion of airborne particulate matter (PM). Insight into the sources of this major contributor to PM is important for policies to mitigate the impact of PM on human health and climate change. In recent years measurement of the abundance of the radioisotope of carbon ((14)C) in samples of PM by accelerator mass spectrometry has been used to help quantify the relative contributions from sources of fossil carbon and contemporary carbon. This review provides an introduction to the different sources of carbon within PM and the role of (14)C measurements, a description of the preparation of PM samples and of the instrumentation used to quantify (14)C, and a summary of the results and source apportionment methods reported in published studies since 2004. All studies report a sizable fraction of the carbonaceous PM as of non-fossil origin. Even for PM collected in urban locations, the proportions of non-fossil carbon generally exceed 30%; typically the proportion in urban background locations is around 40-60% depending on the local influence of biomass burning. Where values have been measured directly, proportions of non-fossil carbon in EC are lower than in OC, reflecting the greater contribution of fossil-fuel combustion to EC and the generally small sources of contemporary EC. Detailed source apportionment studies point to important contributions from biogenic-derived secondary OC, consistent with other evidence of a ubiquitous presence of heavily oxidized background secondary OC. The review concludes with some comments on current issues and future prospects, including progress towards compound-class and individual-compound-specific (14)C analyses.

Chemical characteristics and source apportionment of fine particulate organic carbon in Hong Kong during high particulate matter episodes in winter 2003

NASA Astrophysics Data System (ADS)

Li, Yun-Chun; Yu, Jian Zhen; Ho, Steven Sai Hang; Schauer, James J.; Yuan, Zibing; Lau, Alexis K. H.; Louie, Peter K. K.

2013-02-01

PM2.5 samples were collected at six general stations and one roadside station in Hong Kong in two periods of high particulate matter (PM) in 2003 (27 October-4 November and 30 November-13 December). The highest PM2.5 reached 216 μg m- 3 during the first high PM period and 113 μg m- 3 during the second high PM period. Analysis of synoptic weather conditions identified individual sampling days under dominant influence of one of three types of air masses, that is, local, regional and long-range transported (LRT) air masses. Roadside samples were discussed separately due to heavy influences from vehicular emissions. This research examines source apportionment of fine organic carbon (OC) and contribution of secondary organic aerosol on high PM days under different synoptic conditions. Six primary OC (POC) sources (vehicle exhaust, biomass burning, cooking, cigarette smoke, vegetative detritus, and coal combustion) were identified on the basis of characteristic organic tracers. Individual POC source contributions were estimated using chemical mass balance model. In the roadside and the local samples, OC was dominated by the primary sources, accounting for more than 74% of OC. In the samples influenced by regional and LRT air masses, secondary OC (SOC), which was approximated to be the difference between the total measured OC and the apportioned POC, contributed more than 54% of fine OC. SOC was highly correlated with water-soluble organic carbon and sulfate, consistent with its secondary nature.

Metabolome analysis-based design and engineering of a metabolic pathway in Corynebacterium glutamicum to match rates of simultaneous utilization of D-glucose and L-arabinose.

PubMed

Kawaguchi, Hideo; Yoshihara, Kumiko; Hara, Kiyotaka Y; Hasunuma, Tomohisa; Ogino, Chiaki; Kondo, Akihiko

2018-05-17

L-Arabinose is the second most abundant component of hemicellulose in lignocellulosic biomass, next to D-xylose. However, few microorganisms are capable of utilizing pentoses, and catabolic genes and operons enabling bacterial utilization of pentoses are typically subject to carbon catabolite repression by more-preferred carbon sources, such as D-glucose, leading to a preferential utilization of D-glucose over pentoses. In order to simultaneously utilize both D-glucose and L-arabinose at the same rate, a modified metabolic pathway was rationally designed based on metabolome analysis. Corynebacterium glutamicum ATCC 31831 utilized D-glucose and L-arabinose simultaneously at a low concentration (3.6 g/L each) but preferentially utilized D-glucose over L-arabinose at a high concentration (15 g/L each), although L-arabinose and D-glucose were consumed at comparable rates in the absence of the second carbon source. Metabolome analysis revealed that phosphofructokinase and pyruvate kinase were major bottlenecks for D-glucose and L-arabinose metabolism, respectively. Based on the results of metabolome analysis, a metabolic pathway was engineered by overexpressing pyruvate kinase in combination with deletion of araR, which encodes a repressor of L-arabinose uptake and catabolism. The recombinant strain utilized high concentrations of D-glucose and L-arabinose (15 g/L each) at the same consumption rate. During simultaneous utilization of both carbon sources at high concentrations, intracellular levels of phosphoenolpyruvate declined and acetyl-CoA levels increased significantly as compared with the wild-type strain that preferentially utilized D-glucose. These results suggest that overexpression of pyruvate kinase in the araR deletion strain increased the specific consumption rate of L-arabinose and that citrate synthase activity becomes a new bottleneck in the engineered pathway during the simultaneous utilization of D-glucose and L-arabinose. Metabolome analysis identified potential bottlenecks in D-glucose and L-arabinose metabolism and was then applied to the following rational metabolic engineering. Manipulation of only two genes enabled simultaneous utilization of D-glucose and L-arabinose at the same rate in metabolically engineered C. glutamicum. This is the first report of rational metabolic design and engineering for simultaneous hexose and pentose utilization without inactivating the phosphotransferase system.

Selection and evaluation of reference genes for RT-qPCR expression studies on Burkholderia tropica strain Ppe8, a sugarcane-associated diazotrophic bacterium grown with different carbon sources or sugarcane juice.

PubMed

da Silva, Paula Renata Alves; Vidal, Marcia Soares; de Paula Soares, Cleiton; Polese, Valéria; Simões-Araújo, Jean Luís; Baldani, José Ivo

2016-11-01

Among the members of the genus Burkholderia, Burkholderia tropica has the ability to fix nitrogen and promote sugarcane plant growth as well as act as a biological control agent. There is little information about how this bacterium metabolizes carbohydrates as well as those carbon sources found in the sugarcane juice that accumulates in stems during plant growth. Reverse transcription quantitative PCR (RT-qPCR) can be used to evaluate changes in gene expression during bacterial growth on different carbon sources. Here we tested the expression of six reference genes, lpxC, gyrB, recA, rpoA, rpoB, and rpoD, when cells were grown with glucose, fructose, sucrose, mannitol, aconitic acid, and sugarcane juice as carbon sources. The lpxC, gyrB, and recA were selected as the most stable reference genes based on geNorm and NormFinder software analyses. Validation of these three reference genes during strain Ppe8 growth on the same carbon sources showed that genes involved in glycogen biosynthesis (glgA, glgB, glgC) and trehalose biosynthesis (treY and treZ) were highly expressed when Ppe8 was grown in aconitic acid relative to other carbon sources, while otsA expression (trehalose biosynthesis) was reduced with all carbon sources. In addition, the expression level of the ORF_6066 (gluconolactonase) gene was reduced on sugarcane juice. The results confirmed the stability of the three selected reference genes (lpxC, gyrB, and recA) during the RT-qPCR and also their robustness by evaluating the relative expression of genes involved in glycogen and trehalose biosynthesis when strain Ppe8 was grown on different carbon sources and sugarcane juice.

Blocking hexose entry into glycolysis activates alternative metabolic conversion of these sugars and upregulates pentose metabolism in Aspergillus nidulans

DOE PAGES

Khosravi, Claire; Battaglia, Evy; Kun, Roland S.; ...

2018-03-22

Background: Plant biomass is the most abundant carbon source for many fungal species. In the biobased industry fungi are used to produce lignocellulolytic enzymes to degrade agricultural waste biomass. Here we evaluated if it would be possible to create an Aspergillus nidulans strain that releases but does not metabolize hexoses from plant biomass. For this purpose, metabolic mutants were generated that were impaired in glycolysis, by using hexokinase (hxkA) and glucokinase (glkA) negative strains. To prevent repression of enzyme production due to the hexose accumulation, strains were generated that combined these mutations with a deletion in creA, the repressor involvedmore » in regulating preferential use of different carbon catabolic pathways. Results: Phenotypic analysis revealed reduced growth for the hxkA1 glkA4 mutant on wheat bran. However, hexoses did not accumulate during growth of the mutants on wheat bran, suggesting that glucose metabolism is re-routed towards alternative carbon catabolic pathways. The creAΔ4 mutation in combination with preventing initial phosphorylation in glycolysis resulted in better growth than the hxkA/glkA mutant and an increased expression of pentose catabolic and pentose phosphate pathway genes. This indicates that the reduced ability to use hexoses as carbon sources created a shift towards the pentose fraction of wheat bran as a major carbon source to support growth. Conclusion: Blocking the direct entry of hexoses to glycolysis activates alternative metabolic conversion of these sugars in A. nidulans during growth on plant biomass, but also upregulates conversion of other sugars, such as pentoses.« less

Blocking hexose entry into glycolysis activates alternative metabolic conversion of these sugars and upregulates pentose metabolism in Aspergillus nidulans

DOE Office of Scientific and Technical Information (OSTI.GOV)

Khosravi, Claire; Battaglia, Evy; Kun, Roland S.

Background: Plant biomass is the most abundant carbon source for many fungal species. In the biobased industry fungi are used to produce lignocellulolytic enzymes to degrade agricultural waste biomass. Here we evaluated if it would be possible to create an Aspergillus nidulans strain that releases but does not metabolize hexoses from plant biomass. For this purpose, metabolic mutants were generated that were impaired in glycolysis, by using hexokinase (hxkA) and glucokinase (glkA) negative strains. To prevent repression of enzyme production due to the hexose accumulation, strains were generated that combined these mutations with a deletion in creA, the repressor involvedmore » in regulating preferential use of different carbon catabolic pathways. Results: Phenotypic analysis revealed reduced growth for the hxkA1 glkA4 mutant on wheat bran. However, hexoses did not accumulate during growth of the mutants on wheat bran, suggesting that glucose metabolism is re-routed towards alternative carbon catabolic pathways. The creAΔ4 mutation in combination with preventing initial phosphorylation in glycolysis resulted in better growth than the hxkA/glkA mutant and an increased expression of pentose catabolic and pentose phosphate pathway genes. This indicates that the reduced ability to use hexoses as carbon sources created a shift towards the pentose fraction of wheat bran as a major carbon source to support growth. Conclusion: Blocking the direct entry of hexoses to glycolysis activates alternative metabolic conversion of these sugars in A. nidulans during growth on plant biomass, but also upregulates conversion of other sugars, such as pentoses.« less

Use of food waste-recycling wastewater as an alternative carbon source for denitrification process: A full-scale study.

PubMed

Kim, Eunji; Shin, Seung Gu; Jannat, Md Abu Hanifa; Tongco, Jovale Vincent; Hwang, Seokhwan

2017-12-01

Using organic wastes as an alternative to commercial carbon sources could be beneficial by reducing costs and environmental impacts. In this study, food waste-recycling wastewater (FRW) was evaluated as an alternative carbon source for biological denitrification over a period of seven months in a full-scale sewage wastewater treatment plant. The denitrification performance was stable with a mean nitrate removal efficiency of 97.2%. Propionate was initially the most persistent volatile fatty acid, but was completely utilized after 19days. Eubacteriacea, Saprospiraceae, Rhodocyclaceae and Comamonadaceae were the major bacterial families during FRW treatment and were regarded as responsible for hydrolysis (former two) and nitrate removal (latter two) of FRW. These results demonstrate that FRW can be an effective external carbon source; process stabilization was linked to the acclimation and function of bacterial populations to the change of carbon source. Copyright © 2017 Elsevier Ltd. All rights reserved.

Review: role of carbon sources for in vitro plant growth and development.

PubMed

Yaseen, Mehwish; Ahmad, Touqeer; Sablok, Gaurav; Standardi, Alvaro; Hafiz, Ishfaq Ahmad

2013-04-01

In vitro plant cells, tissues and organ cultures are not fully autotrophic establishing a need for carbohydrates in culture media to maintain the osmotic potential, as well as to serve as energy and carbon sources for developmental processes including shoot proliferation, root induction as well as emission, embryogenesis and organogenesis, which are highly energy demanding developmental processes in plant biology. A variety of carbon sources (both reducing and non-reducing) are used in culture media depending upon genotypes and specific stages of growth. However, sucrose is most widely used as a major transport-sugar in the phloem sap of many plants. In micropropagation systems, morphogenetic potential of plant tissues can greatly be manipulated by varying type and concentration of carbon sources. The present article reviews the past and current findings on carbon sources and their sustainable utilization for in vitro plant tissue culture to achieve better growth rate and development.

Understanding the carbon cycle in a Late Quaternary-age limestone aquifer system using radiocarbon of dissolved inorganic and organic carbon

NASA Astrophysics Data System (ADS)

Bryan, Eliza; Meredith, Karina T.; Baker, Andy; Andersen, Martin S.; Post, Vincent E. A.

2017-04-01

Estimating groundwater residence time is critical for our understanding of hydrogeological systems, for groundwater resource assessments and for the sustainable management of groundwater resources. Due to its capacity to date groundwater up to 30 thousand years old, as well as the ubiquitous nature of dissolved carbon (as organic and inorganic forms) in groundwater, 14C is the most widely used radiogenic dating technique in regional aquifers. However, the geochemistry of carbon in groundwater systems includes interaction with the atmosphere, biosphere and geosphere, which results in multiple sources and sinks of carbon that vary in time and space. Identifying these sources of carbon and processes relating to its release or removal is important for understanding the evolution of the groundwater and essential for residence time calculations. This study investigates both the inorganic and organic facets of the carbon cycle in groundwaters throughout a freshwater lens and mixing zone of a carbonate island aquifer and identifies the sources of carbon that contribute to the groundwater system. Groundwater samples were collected from shallow (5-20 m) groundwater wells on a small carbonate Island in Western Australia in September 2014 and analysed for major and minor ions, stable water isotopes (SWIs: δ18O, δ2H), 3H, 14C and 13C carbon isotope values of both DIC and DOC, and 3H. The composition of groundwater DOC was investigated by Liquid Chromatography-Organic Carbon Detection (LC-OCD) analysis. The presence of 3H (0.12 to 1.35 TU) in most samples indicates that groundwaters on the Island are modern, however the measured 14CDIC values (8.4 to 97.2 pmc) suggest that most samples are significantly older due to carbonate dissolution and recrystallisation reactions that are identified and quantified in this work. 14CDOC values (46.6 to 105.6 pMC) were higher than 14CDIC values and were well correlated with 3H values, however deeper groundwaters had lower 14CDOC values than expected. LC-OCD chromatography of these groundwaters were found to contain higher concentrations of humic substances, that are most likely attributed to the presence of paleosol horizons at depth in the limestone, which are a common feature in aeolianite deposits along the Western coast of Australia and are related to Quaternary sea level change. The paleosols likely contribute old organic matter to the deeper groundwaters, which may explain the lower 14CDOC values. This study has shown that a combined approach that utilises both DIC and DOC tracers, as well as 3H, is required to identify the sources and evolution of carbon in a groundwater system, as well as the processes that effect the application of 14C dating to groundwaters within a carbonate aquifer.

N-doped carbon dots derived from bovine serum albumin and formic acid with one- and two-photon fluorescence for live cell nuclear imaging.

PubMed

Tan, Mingqian; Li, Xintong; Wu, Hao; Wang, Beibei; Wu, Jing

2015-12-01

Carbon dots with both one- and two-photon fluorescence have drawn great attention for biomedical imaging. Herein, nitrogen-doped carbon dots were facilely developed by one-pot hydrothermal method using bovine serum albumin and formic acid as carbon sources. They are highly water-soluble with strong fluorescence when excited with ultraviolet or near infrared light. The carbon dots have a diameter of ~8.32 nm and can emit strong two-photon induced fluorescence upon excitation at 750 nm with a femtosecond laser. X-ray photoelectron spectrometer analysis revealed that the carbon dots contained three components, C, N and O, corresponding to the peak at 285, 398 and 532 eV, respectively. The Fourier-transform infrared spectroscopy analysis revealed that there are carboxyl and carboxylic groups on the surface, which allowed further linking of functional molecules. pH stability study demonstrated that the carbon dots are able to be used in a wide range of pH values. The fluorescence mechanism is also discussed in this study. Importantly, these carbon dots are biocompatible and highly photostable, which can be directly applied for both one- and two-photon living cell imaging. After proper surface functionalization with TAT peptide, they can be used as fluorescent probes for live cell nuclear-targeted imaging. Copyright © 2015 Elsevier B.V. All rights reserved.

Microbial production of multi-carbon chemicals and fuels from water and carbon dioxide using electric current

DOEpatents

Lovley, Derek R; Nevin, Kelly

2015-11-03

The invention provides systems and methods for generating organic compounds using carbon dioxide as a source of carbon and electrical current as an energy source. In one embodiment, a reaction cell is provided having a cathode electrode and an anode electrode that are connected to a source of electrical power, and which are separated by a permeable membrane. A biological film is provided on the cathode. The biological film comprises a bacterium that can accept electrons and that can convert carbon dioxide to a carbon-bearing compound and water in a cathode half-reaction. At the anode, water is decomposed to free molecular oxygen and solvated protons in an anode half-reaction. The half-reactions are driven by the application of electrical current from an external source. Compounds that have been produced include acetate, butanol, 2-oxobutyrate, propanol, ethanol, and formate.

Microbial production of multi-carbon chemicals and fuels from water and carbon dioxide using electric current

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lovley, Derek R.; Nevin, Kelly P.

The invention provides systems and methods for generating organic compounds using carbon dioxide as a source of carbon and electrical current as an energy source. In one embodiment, a reaction cell is provided having a cathode electrode and an anode electrode that are connected to a source of electrical power, and which are separated by a permeable membrane. A biological film is provided on the cathode. The biological film comprises a bacterium that can accept electrons and that can convert carbon dioxide to a carbon-bearing compound and water in a cathode half-reaction. At the anode, water is decomposed to freemore » molecular oxygen and solvated protons in an anode half-reaction. The half-reactions are driven by the application of electrical current from an external source. Compounds that have been produced include acetate, butanol, 2-oxobutyrate, propanol, ethanol, and formate.« less

USE OF STABLE CARBON ISOTOPE RATIOS OF FATTY ACIDS TO EVALUATE MICROBIAL CARBON SOURCES IN TERRESTRIAL ENVIRONMENTS

EPA Science Inventory

We use measurements of the concentration and stable carbon isotopic ratio (D 13C) of individual microbial phospholipid fatty acids (PLFAs) in soils as indicators of live microbial biomass levels and microbial carbon source. We found that intensive sugar cane cultivation leads to ...

CASSIA--a dynamic model for predicting intra-annual sink demand and interannual growth variation in Scots pine.

PubMed

Schiestl-Aalto, Pauliina; Kulmala, Liisa; Mäkinen, Harri; Nikinmaa, Eero; Mäkelä, Annikki

2015-04-01

The control of tree growth vs environment by carbon sources or sinks remains unresolved although it is widely studied. This study investigates growth of tree components and carbon sink-source dynamics at different temporal scales. We constructed a dynamic growth model 'carbon allocation sink source interaction' (CASSIA) that calculates tree-level carbon balance from photosynthesis, respiration, phenology and temperature-driven potential structural growth of tree organs and dynamics of stored nonstructural carbon (NSC) and their modifying influence on growth. With the model, we tested hypotheses that sink demand explains the intra-annual growth dynamics of the meristems, and that the source supply is further needed to explain year-to-year growth variation. The predicted intra-annual dimensional growth of shoots and needles and the number of cells in xylogenesis phases corresponded with measurements, whereas NSC hardly limited the growth, supporting the first hypothesis. Delayed GPP influence on potential growth was necessary for simulating the yearly growth variation, indicating also at least an indirect source limitation. CASSIA combines seasonal growth and carbon balance dynamics with long-term source dynamics affecting growth and thus provides a first step to understanding the complex processes regulating intra- and interannual growth and sink-source dynamics. © 2015 The Authors. New Phytologist © 2015 New Phytologist Trust.

Community Response to a Heavy Precipitation Event in High Temperature, Chemosynthetic Biofilms and Sediments

NASA Astrophysics Data System (ADS)

Meyer-Dombard, D. R.; Loiacono, S. T.; Shock, E.

2012-12-01

Coordinated analysis of the "Bison Pool" (BP) Environmental Genome and a complementary contextual geochemical dataset of ~75 parameters revealed biogeochemical cycling and metabolic and microbial community shifts in a Yellowstone National Park hot spring ecosystem (1). The >22m outflow of BP is a gradient of decreasing temperature, increasing dissolved oxygen, and changing availability of nutrients. Microbial life at BP transitions from a 92°C chemosynthetic community in the BP source pool to a 56°C photosynthetic mat community. Metagenomic data at BP showed the potential for both heterotrophic and autotrophic carbon metabolism (rTCA and acetyl-CoA cycles) in the highest temperature, chemosynthetic regions (1). This region of the outflow is dominated by Aquificales and Pyrococcus relatives, with smaller contributions of heterotrophic Bacteria. Following a 2h heavy precipitation event we observed an influx of exogenous organic material into the source pool supplied from the meadow surrounding the BP area. We sampled biomass and fluid at several locations within the outflow immediately following the event, and on several occasions for the next eight days. Elemental analysis and carbon and nitrogen isotopic analyses were conducted on biomass and sediment, and dissolved organic and inorganic carbon content and δ13C of fluids were analyzed. DNA and RNA were extracted, and following RT-PCR, nitrogen cycle functional gene expression was evaluated. Previous work at BP has shown that chemosynthetic biomass may carry isotopic signatures of fractionation during carbon fixation, via the acetyl-CoA and rTCA cycles (2). However, the addition of exogenous organic carbon during the rain event had an immediate and dramatic effect on the sediments and biofilms in the chemosynthetic zone of the outflow. Dissolved organic carbon was the highest measured in six years. Chemosynthetic biomass responded by incorporating the organic carbon. Carbon isotopic signatures in chemosynthetic biomass at "Bison Pool" have been previously measured at ~ -4‰ (2). However, immediately following the event, carbon in biomass was measured at ~ -25‰ (values similar to local soil and bison excrement). Biomass closest to the source of "Bison Pool" returned to ~ -4‰ within a few days, but biomass ~ 3m downstream was still ~ -14‰ eight days after the event. Carbon isotopic signatures of the dissolved inorganic carbon (DIC) were depleted relative to values measured in 2005-2009, possibly a result of a combination of added DIC in rain and heterotrophic waste produced using the exogenous depleted carbon; this depleted DIC persisted for the full study period. These results suggest that a shift from autotrophic to heterotrophic metabolism may occur following every significant precipitation event at BP, and support previous observations concerning potential periodic eutrophic conditions in this ecosystem (3). 1 Swingley, W.D. et al., PLoS ONE, 7(6): e38108. 2 Havig et al., 2011. JGR Biogeosciences, 116, G01005. 3 Loiacono, S.T. et al., 2012. EM, 14(5): 1272-1283.

Exhaustive Analysis of a Genotype Space Comprising 1015 Central Carbon Metabolisms Reveals an Organization Conducive to Metabolic Innovation

PubMed Central

Hosseini, Sayed-Rzgar; Barve, Aditya; Wagner, Andreas

2015-01-01

All biological evolution takes place in a space of possible genotypes and their phenotypes. The structure of this space defines the evolutionary potential and limitations of an evolving system. Metabolism is one of the most ancient and fundamental evolving systems, sustaining life by extracting energy from extracellular nutrients. Here we study metabolism’s potential for innovation by analyzing an exhaustive genotype-phenotype map for a space of 1015 metabolisms that encodes all possible subsets of 51 reactions in central carbon metabolism. Using flux balance analysis, we predict the viability of these metabolisms on 10 different carbon sources which give rise to 1024 potential metabolic phenotypes. Although viable metabolisms with any one phenotype comprise a tiny fraction of genotype space, their absolute numbers exceed 109 for some phenotypes. Metabolisms with any one phenotype typically form a single network of genotypes that extends far or all the way through metabolic genotype space, where any two genotypes can be reached from each other through a series of single reaction changes. The minimal distance of genotype networks associated with different phenotypes is small, such that one can reach metabolisms with novel phenotypes – viable on new carbon sources – through one or few genotypic changes. Exceptions to these principles exist for those metabolisms whose complexity (number of reactions) is close to the minimum needed for viability. Increasing metabolic complexity enhances the potential for both evolutionary conservation and evolutionary innovation. PMID:26252881

Investigation of refractory black carbon-containing particle morphologies using the single-particle soot photometer (SP2)

DOE PAGES

Sedlacek, III, Arthur J.; Lewis, Ernie R.; Onasch, Timothy B.; ...

2015-07-24

An important source of uncertainty in radiative forcing by absorbing aerosol particles is the uncertainty in their morphologies (i.e., the location of the absorbing substance on/in the particles). To examine the effects of particle morphology on the response of an individual black carbon-containing particle in a Single-Particle Soot Photometer (SP2), a series of experiments was conducted to investigate black carbon-containing particles of known morphology using Regal black (RB), a proxy for collapsed soot, as the light-absorbing substance. Particles were formed by coagulation of RB with either a solid substance (sodium chloride or ammonium sulfate) or a liquid substance (dioctyl sebacate),more » and by condensation with dioctyl sebacate, the latter experiment forming particles in a core-shell configuration. Each particle type experienced fragmentation (observed as negative lagtimes), and each yielded similar lagtime responses in some instances, confounding attempts to differentiate particle morphology using current SP2 lagtime analysis. SP2 operating conditions, specifically laser power and sample flow rate, which in turn affect the particle heating and dissipation rates, play an important role in the behavior of particles in the SP2, including probability of fragmentation. This behavior also depended on the morphology of the particles and on the thermo-chemical properties of the non-RB substance. Although these influences cannot currently be unambiguously separated, the SP2 analysis may still provide useful information on particle mixing states and black carbon particle sources.« less

Source-sink-storage relationships of conifers

DOE Office of Scientific and Technical Information (OSTI.GOV)

Luxmoore, R.J.; Oren, R.; Sheriff, D.W.

1995-07-01

Irradiance, air temperature, saturation vapor pressure deficit, and soil temperature vary in association with Earth`s daily rotation, inducing significant hourly changes in the rates of plant physiological processes. These processes include carbon fixation in photosynthesis, sucrose translocation, and carbon utilization in growth, storage, and respiration. The sensitivity of these physiological processes to environmental factors such as temperature, soil water availability, and nutrient supply reveals differences that must be viewed as an interactive whole in order to comprehend whole-plant responses to the environment. Integrative frameworks for relationships between plant physiological processes are needed to provide syntheses of plant growth and development.more » Source-sink-storage relationships, addressed in this chapter, provide one framework for synthesis of whole-plant responses to external environmental variables. To address this issue, some examples of carbon assimilation and utilization responses of five conifer species to environmental factors from a range of field environments are first summarized. Next, the interactions between sources, sinks, and storages of carbon are examined at the leaf and tree scales, and finally, the review evaluates the proposition that processes involved with carbon utilization (sink activity) are more sensitive to the supply of water and nutrients (particularly nitrogen) than are the processes of carbon gain (source activity) and carbon storage. The terms {open_quotes}sink{close_quotes} and {open_quotes}source{close_quotes} refer to carbon utilization and carbon gain, respectively. The relative roles of stored carbon reserves and of current photosynthate in meeting sink demand are addressed. Discussions focus on source-sink-storage relationships within the diurnal, wetting-drying, and annual cycles of conifer growth and development, and some discussion of life cycle aspects is also presented.« less

Methods for forming particles from single source precursors

DOEpatents

Fox, Robert V [Idaho Falls, ID; Rodriguez, Rene G [Pocatello, ID; Pak, Joshua [Pocatello, ID

2011-08-23

Single source precursors are subjected to carbon dioxide to form particles of material. The carbon dioxide may be in a supercritical state. Single source precursors also may be subjected to supercritical fluids other than supercritical carbon dioxide to form particles of material. The methods may be used to form nanoparticles. In some embodiments, the methods are used to form chalcopyrite materials. Devices such as, for example, semiconductor devices may be fabricated that include such particles. Methods of forming semiconductor devices include subjecting single source precursors to carbon dioxide to form particles of semiconductor material, and establishing electrical contact between the particles and an electrode.

Effect of carbon source on nitrogen removal in anaerobic ammonium oxidation (anammox) process.

PubMed

Zhu, Weiqiang; Zhang, Peiyu; Dong, Huiyu; Li, Jin

2017-04-01

Anaerobic ammonium oxidation (anammox) has been regarded as an efficient process to treat high-strength wastewater without organic carbon source. To investigate nitrogen removal performance of anammox in presence of organic carbon source can broaden its application on organic wastewater treatment. In this work, effect of carbon source on anammox process was explored. Operating temperature was set at 35 ± 1°C. Influent pH and hydraulic retention time were 7.5 and 6 h, respectively. Effluent [Formula: see text] was affected little with COD no more than 480 mg/L. Independent of carbon source content, nitrite removal rate was around 99%. The variation of [Formula: see text] lagged behind [Formula: see text] at high COD content, and pH could be used as an indicator for [Formula: see text] removal. Specific anammox activity dropped from 0.39 to 0.19  [Formula: see text] at COD=720 mg/L. The remodified logistic model was quite appropriate for describing the nitrogen removal kinetics and predicting the performance of anammox process in presence of carbon source. Copyright © 2017 The Society for Biotechnology, Japan. Published by Elsevier B.V. All rights reserved.

[Quantitative estimation source of urban atmospheric CO2 by carbon isotope composition].

PubMed

Liu, Wei; Wei, Nan-Nan; Wang, Guang-Hua; Yao, Jian; Zeng, You-Shi; Fan, Xue-Bo; Geng, Yan-Hong; Li, Yan

2012-04-01

To effectively reduce urban carbon emissions and verify the effectiveness of currently project for urban carbon emission reduction, quantitative estimation sources of urban atmospheric CO2 correctly is necessary. Since little fractionation of carbon isotope exists in the transportation from pollution sources to the receptor, the carbon isotope composition can be used for source apportionment. In the present study, a method was established to quantitatively estimate the source of urban atmospheric CO2 by the carbon isotope composition. Both diurnal and height variations of concentrations of CO2 derived from biomass, vehicle exhaust and coal burning were further determined for atmospheric CO2 in Jiading district of Shanghai. Biomass-derived CO2 accounts for the largest portion of atmospheric CO2. The concentrations of CO2 derived from the coal burning are larger in the night-time (00:00, 04:00 and 20:00) than in the daytime (08:00, 12:00 and 16:00), and increase with the increase of height. Those derived from the vehicle exhaust decrease with the height increase. The diurnal and height variations of sources reflect the emission and transport characteristics of atmospheric CO2 in Jiading district of Shanghai.

Production of bacterial cellulose using different carbon sources and culture media.

PubMed

Mohammadkazemi, Faranak; Azin, Mehrdad; Ashori, Alireza

2015-03-06

In this work, the effects of carbon sources and culture media on the production and structural properties of bacterial cellulose (BC) have been studied. BC nanofibers were synthesized using Gluconacetobacter xylinus strain PTCC 1734. Media used were Hestrin-Schramm (H), Yamanaka (Y), and Zhou (Z). Five different carbon sources, namely date syrup, glucose, mannitol, sucrose, and food-grade sucrose were used in these media. All the produced BC pellicles were characterized in terms of dry weight production, biomass yield, thermal stability, crystallinity and morphology by thermogravimetric analysis (TGA), x-ray diffraction (XRD), and field emission scanning electron microscopy (FE-SEM). The obtained results showed that mannitol lead to the highest yield, followed by sucrose. The highest production efficiency of mannitol might be due to the nitrogen source, which plays an important role. The maximum improvement on the thermal stability of the composites was achieved when mannitol was used in H medium. In addition, the crystallinity was higher in BC formed in H medium compared to other media. FE-SEM micrographs illustrated that the BC pellicles, synthesized in the culture media H and Z, were stable, unlike those in medium Y that were unstable. The micrographs of BC produced in media containing mannitol and sucrose provided evidence of the strong interfacial adhesion between the BC fibers without noticeable aggregates. Copyright © 2014 Elsevier Ltd. All rights reserved.

Effect of O horizon and Forest Harvest Residue Manipulations on Soil Organic Matter Content and Composition of a Loblolly Pine Plantation in the Southeastern United States

NASA Astrophysics Data System (ADS)

Hatten, J.; Mack, J.; Dewey, J.; Sucre, E.; Leggett, Z.

2012-04-01

Forest harvest residues and forest floor materials are significant sources of mineral soil organic matter and nutrients for regenerating and establishing forests. Harvest residues in particular are occasionally removed, piled, or burned following harvesting. While the forest floor is never purposely removed during operational harvesting and site preparation, they could become in high demand as bioenergy markets develop. Weyerhaeuser Company established an experimental study to evaluate the effect of forest-floor manipulation on site productivity and soil carbon. This study was installed in a loblolly pine plantation near Millport, Alabama, USA on the Upper Gulf Coastal Plain to test both extremes from complete removal of harvest residues and forest floor to doubling of these materials. This study has been continuously monitored since its establishment in 1994. We have examined the effects of varying forest floor levels on the biomass, soil carbon content, and soil carbon composition in the context of these management activities. Above- and below-ground productivity, soil moisture, soil temperature, and nutrient dynamics have been related to soil organic carbon in mineral soil size/density fractionation and lignin and cutin biomarkers from the cupric oxide (CuO) oxidation technique. We have found that while removing litter and harvest residues has little effect on biomass production and soil carbon, importing litter and harvest residues increases forest productivity and soil carbon content. Interestingly, increased carbon was observed in all depths assessed (O horizon, 0-20, 20-40, and 40-60cm) suggesting that this practice may sequester organic carbon in deep soil horizons. Our biomarker analysis indicated that importing litter and harvest residues increased relative contributions from above ground sources at the 20-40cm depth and increased relative contributions from belowground sources at the 40-60cm depth. These results suggest that organic matter manipulations in managed forests can have significant effects on deep soil carbon that may be resistant to mineralization or the effects of other perturbations such as climate change.

A New Biomarker Proxy for Palaeo-pCO2 Reconstruction in Ancient Sediments

NASA Astrophysics Data System (ADS)

Pancost, R. D.; Magness, S.; Maxwell, J. R.

2001-12-01

The carbon isotopic composition of marine organic matter has commonly been used in chemostratigraphy or as a proxy for ancient pCO2 levels. Both of these goals require that the source of organic matter be well defined, and in the case of palaeo-pCO2 investigations, the organic matter must be derived ultimately from aquatic photoautotrophs. However, additional sources, including terrestrial biomass, heterotrophs, or bacteria, can also contribute to total organic carbon (TOC). In the past decade, numerous workers have attempted to refine organic carbon isotope records using the isotopic composition of individual compounds (biomarkers) rather than the TOC. The appeal of this approach is that by examining specific biomarkers, a signal diagnostic for photoautotrophic organisms can be obtained. For compound-specific isotope analyses to be most effective, the compounds analysed must have a relatively specific source. Among the most commonly used biomarkers in palaeo-pCO2 investigations are alkenones, long-chain ketones derived exclusively from certain species of haptophyte algae. However, alkenones are absent in rocks older than the Jurassic and either absent or present in low abundances in rocks older than the Miocene. Thus, in older rocks, other biomarkers, including steranes (derived from eukaryotic sterols), phytane (presumably derived from chlorophyll), and n-alkanes (derived from algal macromolecules), are used. Unfortunately, these compounds can have alternative sources and become less reliable as isotopic proxies for photoautotrophs with increasing thermal maturity and complexity of the hydrocarbon distribution. Here we propose the use of a maleimides (1H-pyrrole-2,5-diones) as a new biomarker class for evaluating past changes in photoautotroph carbon isotopic compositions. Maleimides have three key advantages over other biomarkers in ancient rocks. First, they are degradation products of chlorophyll and have no known alternative origins in marine sediments. Second, because of their unique structure, they can be readily isolated from other organic components facilitating the determination of accurate carbon isotope ratios. Finally, the pyrrole structure is relatively stable insuring that maleimides survive even in thermally mature rocks. We have applied the analysis of maleimides to investigations of sediments from the Kupferschiefer (Permian), Vena del Gesso (Messinian) and Livello Bonarelli (Cenomanian-Turonian boundary) formations. In all three cases, the carbon isotopic compositions of selected maleimides exhibit shifts predicted by either carbonate or other biomarker carbon isotope profiles.

Sources and yields of dissolved carbon in northern Wisconsin stream catchments with differing amounts of Peatland

USGS Publications Warehouse

Elder, J.F.; Rybicki, N.B.; Carter, V.; Weintraub, V.

2000-01-01

In five tributary streams (four inflowing and one outflowing) of 1600-ha Trout Lake in northern Wisconsin, USA, we examined factors that can affect the magnitude of stream flow and transport of dissolved organic and inorganic carbon (DOC and DIC) through the streams to the lake. One catchment, the Allequash Creek basin, was investigated in more detail to describe the dynamics of carbon flow and to identify potential carbon sources. Stream flows and carbon loads showed little or no relation to surface-water catchment area. They were more closely related to ground-water watershed area because ground-water discharge, from both local and regional sources, is a major contributor to the hydrologic budgets of these catchments. An important factor in determining carbon influx to the stream is the area of peatland in the catchment. Peatland porewaters contain DOC concentrations up to 40 mg l-1 and are a significant potential carbon source. Ground-water discharge and lateral flow through peat are the suspected mechanisms for transport of that carbon to the streams. Carbon and nitrogen isotopes suggested that the sources of DOC in Allequash Creek above Allequash Lake were wetland vegetation and peat and that the sources below Allequash Lake were filamentous algae and wild rice. Catchments with high proportions of peatland, including the Allequash Creek catchment, tended to have elevated DOC loads in outflowing stream water. Respiration and carbon mineralization in lakes within the system tend to produce low DOC and low DOC/DIC in lake outflows, especially at Trout Lake. In Allequash Lake, however, the shallow peat island and vegetation-filled west end were sources of DOC. Despite the vast carbon reservoir in the peatlands, carbon yields were very low in these catchments. Maximum yields were on the order of 2.5 g m-2 y-1 DOC and 5.5 g m-2 y-1 DIC. The small yields were attributable to low stream flows due to lack of significant overland runoff and very limited stream channel coverage of the total catchment area.

Mineral Carbonation Potential of CO2 from Natural and Industrial-based Alkalinity Sources

NASA Astrophysics Data System (ADS)

Wilcox, J.; Kirchofer, A.

2014-12-01

Mineral carbonation is a Carbon Capture and Storage (CSS) technology where gaseous CO2 is reacted with alkaline materials (such as silicate minerals and alkaline industrial wastes) and converted into stable and environmentally benign carbonate minerals (Metz et al., 2005). Here, we present a holistic, transparent life cycle assessment model of aqueous mineral carbonation built using a hybrid process model and economic input-output life cycle assessment approach. We compared the energy efficiency and the net CO2 storage potential of various mineral carbonation processes based on different feedstock material and process schemes on a consistent basis by determining the energy and material balance of each implementation (Kirchofer et al., 2011). In particular, we evaluated the net CO2 storage potential of aqueous mineral carbonation for serpentine, olivine, cement kiln dust, fly ash, and steel slag across a range of reaction conditions and process parameters. A preliminary systematic investigation of the tradeoffs inherent in mineral carbonation processes was conducted and guidelines for the optimization of the life-cycle energy efficiency are provided. The life-cycle assessment of aqueous mineral carbonation suggests that a variety of alkalinity sources and process configurations are capable of net CO2 reductions. The maximum carbonation efficiency, defined as mass percent of CO2 mitigated per CO2 input, was 83% for CKD at ambient temperature and pressure conditions. In order of decreasing efficiency, the maximum carbonation efficiencies for the other alkalinity sources investigated were: olivine, 66%; SS, 64%; FA, 36%; and serpentine, 13%. For natural alkalinity sources, availability is estimated based on U.S. production rates of a) lime (18 Mt/yr) or b) sand and gravel (760 Mt/yr) (USGS, 2011). The low estimate assumes the maximum sequestration efficiency of the alkalinity source obtained in the current work and the high estimate assumes a sequestration efficiency of 85%. The total CO2 storage potential for the alkalinity sources considered in the U.S. ranges from 1.3% to 23.7% of U.S. CO2 emissions, depending on the assumed availability of natural alkalinity sources and efficiency of the mineral carbonation processes.

Origin and sources of dissolved organic matter in snow on the East Antarctic ice sheet.

PubMed

Antony, Runa; Grannas, Amanda M; Willoughby, Amanda S; Sleighter, Rachel L; Thamban, Meloth; Hatcher, Patrick G

2014-06-03

Polar ice sheets hold a significant pool of the world's carbon reserve and are an integral component of the global carbon cycle. Yet, organic carbon composition and cycling in these systems is least understood. Here, we use ultrahigh resolution mass spectrometry to elucidate, at an unprecedented level, molecular details of dissolved organic matter (DOM) in Antarctic snow. Tens of thousands of distinct molecular species are identified, providing clues to the nature and sources of organic carbon in Antarctica. We show that many of the identified supraglacial organic matter formulas are consistent with material from microbial sources, and terrestrial inputs of vascular plant-derived materials are likely more important sources of organic carbon to Antarctica than previously thought. Black carbon-like material apparently originating from biomass burning in South America is also present, while a smaller fraction originated from soil humics and appears to be photochemically or microbially modified. In addition to remote continental sources, we document signals of oceanic emissions of primary aerosols and secondary organic aerosol precursors. The new insights on the diversity of organic species in Antarctic snowpack reinforce the importance of studying organic carbon associated with the Earth's polar regions in the face of changing climate.

The Aspergillus nidulans Pyruvate Dehydrogenase Kinases Are Essential To Integrate Carbon Source Metabolism.

PubMed

Ries, Laure Nicolas Annick; de Assis, Leandro José; Rodrigues, Fernando José Santos; Caldana, Camila; Rocha, Marina Campos; Malavazi, Iran; Bayram, Özgür; Goldman, Gustavo H

2018-05-24

The pyruvate dehydrogenase complex (PDH), that converts pyruvate to acetyl-coA, is regulated by pyruvate dehydrogenase kinases (PDHK) and phosphatases (PDHP) that have been shown to be important for morphology, pathogenicity and carbon source utilisation in different fungal species. The aim of this study was to investigate the role played by the three PDHKs PkpA, PkpB and PkpC in carbon source utilisation in the reference filamentous fungus Aspergillus nidulans , in order to unravel regulatory mechanisms which could prove useful for fungal biotechnological and biomedical applications. PkpA and PkpB were shown to be mitochondrial whereas PkpC localised to the mitochondria in a carbon source-dependent manner. Only PkpA was shown to regulate PDH activity. In the presence of glucose, deletion of pkpA and pkpC resulted in reduced glucose utilisation, which affected carbon catabolite repression (CCR) and hydrolytic enzyme secretion, due to de-regulated glycolysis and TCA cycle enzyme activities. Furthermore, PkpC was shown to be required for the correct metabolic utilisation of cellulose and acetate. PkpC negatively regulated the activity of the glyoxylate cycle enzyme isocitrate lyase (ICL), required for acetate metabolism. In summary, this study identified PDHKs important for the regulation of central carbon metabolism in the presence of different carbon sources, with effects on the secretion of biotechnologically important enzymes and carbon source-related growth. This work demonstrates how central carbon metabolism can affect a variety of fungal traits and lays a basis for further investigation into these characteristics with potential interest for different applications. Copyright © 2018, G3: Genes, Genomes, Genetics.

Sorption of Groundwater Dissolved Organic Carbon onto Minerals

NASA Astrophysics Data System (ADS)

Rutlidge, H.; Oudone, P.; McDonough, L.; Meredith, K.; Andersen, M. S.; O'Carrol, D. M.; Baker, A.

2017-12-01

Our understanding of groundwater organic matter (OM) as a carbon source or sink in the environmental carbon cycle is limited. The dynamics of groundwater OM is mainly governed by biological processing and its sorption to minerals. In saturated groundwaters, dissolved OM (DOM) represents one part of the groundwater organic carbon pool. Without consideration of the DOM sorption, it is not possible to quantify governing groundwater OM processes. This research explores the rate and extent of DOM sorption on different minerals. Groundwater DOM samples, and International Humic Substances Society (IHSS) standard solutions, were analysed. Each was mixed with a range of masses of iron coated quartz, clean quartz, and calcium carbonate, and shaken for 2 hours to reach equilibrium before being filtered through 0.2 μm for total dissolved organic carbon (DOC) and composition analysis by size-exclusion chromatography-organic carbon detection (LC-OCD). Sorption isotherms were constructed and groundwater DOM sorption were compared to the sorption of IHSS standards. Initial results suggest that for the IHSS standards, the operationally-defined humic substances fraction had the strongest sorption compared to the other LC-OCD fractions and total DOC. Some samples exhibited a small increase in the low molecular weight neutral (LMW-N) aqueous concentration with increasing humic substances sorption. This gradual increase observed could be the result of humic substances desorbing or their breakdown during the experiment. Further results comparing these IHSS standards with groundwater samples will be presented. In conjunction with complementary studies, these results can help provide more accurate prediction of whether groundwater OM is a carbon source or sink, which will enable the management of the groundwater resources as part of the carbon economy.

Inorganic carbon loading as a primary driver of dissolved carbon dioxide concentrations in the lakes and reservoirs of the contiguous United States

USGS Publications Warehouse

McDonald, Cory P.; Stets, Edward; Striegl, Robert G.; Butman, David

2013-01-01

Accurate quantification of CO2 flux across the air-water interface and identification of the mechanisms driving CO2 concentrations in lakes and reservoirs is critical to integrating aquatic systems into large-scale carbon budgets, and to predicting the response of these systems to changes in climate or terrestrial carbon cycling. Large-scale estimates of the role of lakes and reservoirs in the carbon cycle, however, typically must rely on aggregation of spatially and temporally inconsistent data from disparate sources. We performed a spatially comprehensive analysis of CO2 concentration and air-water fluxes in lakes and reservoirs of the contiguous United States using large, consistent data sets, and modeled the relative contribution of inorganic and organic carbon loading to vertical CO2 fluxes. Approximately 70% of lakes and reservoirs are supersaturated with respect to the atmosphere during the summer (June–September). Although there is considerable interregional and intraregional variability, lakes and reservoirs represent a net source of CO2 to the atmosphere of approximately 40 Gg C d–1 during the summer. While in-lake CO2 concentrations correlate with indicators of in-lake net ecosystem productivity, virtually no relationship exists between dissolved organic carbon and pCO2,aq. Modeling suggests that hydrologic dissolved inorganic carbon supports pCO2,aq in most supersaturated systems (to the extent that 12% of supersaturated systems simultaneously exhibit positive net ecosystem productivity), and also supports primary production in most CO2-undersaturated systems. Dissolved inorganic carbon loading appears to be an important determinant of CO2concentrations and fluxes across the air-water interface in the majority of lakes and reservoirs in the contiguous United States.

DOE Office of Scientific and Technical Information (OSTI.GOV)

B.E. Law; D. Turner; M. Goeckede

GOAL: To develop and apply an approach to quantify and understand the regional carbon balance of the west coast states for the North American Carbon Program. OBJECTIVE: As an element of NACP research, the proposed investigation is a two pronged approach that derives and evaluates a regional carbon (C) budget for Oregon, Washington, and California. Objectives are (1) Use multiple data sources, including AmeriFlux data, inventories, and multispectral remote sensing data to investigate trends in carbon storage and exchanges of CO2 and water with variation in climate and disturbance history; (2) Develop and apply regional modeling that relies on thesemore » multiple data sources to reduce uncertainty in spatial estimates of carbon storage and NEP, and relative contributions of terrestrial ecosystems and anthropogenic emissions to atmospheric CO2 in the region; (3) Model terrestrial carbon processes across the region, using the Biome-BGC terrestrial ecosystem model, and an atmospheric inverse modeling approach to estimate variation in rate and timing of terrestrial uptake and feedbacks to the atmosphere in response to climate and disturbance. APPROACH: In performing the regional analysis, the research plan for the bottom-up approach uses a nested hierarchy of observations that include AmeriFlux data (i.e., net ecosystem exchange (NEE) from eddy covariance and associated biometric data), intermediate intensity inventories from an extended plot array partially developed from the PI's previous research, Forest Service FIA and CVS inventory data, time since disturbance, disturbance type, and cover type from Landsat developed in this study, and productivity estimates from MODIS algorithms. The BIOME-BGC model is used to integrate information from these sources and quantify C balance across the region. The inverse modeling approach assimilates flux data from AmeriFlux sites, high precision CO2 concentration data from AmeriFlux towers and four new calibrated CO2 sites, reanalysis meteorology and various remote sensing products to generate statewide estimates of biosphere carbon exchange from the atmospheric point of view.« less

A review of carbon monoxide sources, sinks, and concentrations in the earth's atmosphere

NASA Technical Reports Server (NTRS)

Bortner, M. H.; Kummler, R. H.; Jaffe, L. S.

1972-01-01

Carbon monoxide is a toxic pollutant which is continually introduced into the earth's atmosphere in significant quantities. There are apparently some mechanisms operating which destroy most of the CO in the atmosphere, i.e., a carbon monoxide sink. These mechanisms have not as yet been established in a quantitative sense. This report discusses the various possible removal mechanisms which warrant serious consideration. Particular emphasis is given to chemical reactions (especially that with OH), soil bacteria and other biological action, and transport effects. The sources of carbon monoxide, both natural and anthropogenic, are reviewed and it is noted that there is quite possibly a significant undefined natural source. Atmospheric CO concentrations are discussed and their implications on carbon monoxide lifetime, sinks and sources are considered.

Chemical and carbon isotopic composition of dissolved organic carbon in a regional confined methanogenic aquifer

USGS Publications Warehouse

Aravena, R.; Wassenaar, L.I.; Spiker, E. C.

2004-01-01

This study demonstrates the advantage of a combined use of chemical and isotopic tools to understand the dissolved organic carbon (DOC) cycle in a regional confined methanogenic aquifer. DOC concentration and carbon isotopic data demonstrate that the soil zone is a primary carbon source of groundwater DOC in areas close to recharge zones. An in-situ DOC source linked to organic rich sediments present in the aquifer matrix is controlling the DOC pool in the central part of the groundwater flow system. DOC fractions, 13C-NMR on fulvic acids and 14C data on DOC and CH4 support the hypothesis that the in-situ DOC source is a terrestrial organic matter and discard the Ordovician bedrock as a source of DOC. ?? 2004 Taylor and Francis Ltd.

Flux balance analysis indicates that methane is the lowest cost feedstock for microbial cell factories

DOE Office of Scientific and Technical Information (OSTI.GOV)

Comer, Austin D.; Long, Matthew R.; Reed, Jennifer L.

The low cost of natural gas has driven significant interest in using C 1 carbon sources (e.g. methane, methanol, CO, syngas) as feedstocks for producing liquid transportation fuels and commodity chemicals. Given the large contribution of sugar and lignocellulosic feedstocks to biorefinery operating costs, natural gas and other C 1 sources may provide an economic advantage. To assess the relative costs of these feedstocks, we performed flux balance analysis on genome-scale metabolic models to calculate the maximum theoretical yields of chemical products from methane, methanol, acetate, and glucose. Yield calculations were performed for every metabolite (as a proxy for desiredmore » products) in the genome-scale metabolic models of three organisms: Escherichia coli (bacterium), Saccharomyces cerevisiae (yeast), and Synechococcus sp. PCC 7002 (cyanobacterium). The calculated theoretical yields and current feedstock prices provided inputs to create comparative feedstock cost surfaces. Our analysis shows that, at current market prices, methane feedstock costs are consistently lower than glucose when used as a carbon and energy source for microbial chemical production. Conversely, methanol is costlier than glucose under almost all price scenarios. Acetate feedstock costs could be less than glucose given efficient acetate production from low-cost syngas using nascent biological gas to liquids (BIO-GTL) technologies. Furthermore, our analysis suggests that research should focus on overcoming the technical challenges of methane assimilation and/or yield of acetate via BIO-GTL to take advantage of low-cost natural gas rather than using methanol as a feedstock.« less

Flux balance analysis indicates that methane is the lowest cost feedstock for microbial cell factories

DOE PAGES

Comer, Austin D.; Long, Matthew R.; Reed, Jennifer L.; ...

2017-07-10

The low cost of natural gas has driven significant interest in using C 1 carbon sources (e.g. methane, methanol, CO, syngas) as feedstocks for producing liquid transportation fuels and commodity chemicals. Given the large contribution of sugar and lignocellulosic feedstocks to biorefinery operating costs, natural gas and other C 1 sources may provide an economic advantage. To assess the relative costs of these feedstocks, we performed flux balance analysis on genome-scale metabolic models to calculate the maximum theoretical yields of chemical products from methane, methanol, acetate, and glucose. Yield calculations were performed for every metabolite (as a proxy for desiredmore » products) in the genome-scale metabolic models of three organisms: Escherichia coli (bacterium), Saccharomyces cerevisiae (yeast), and Synechococcus sp. PCC 7002 (cyanobacterium). The calculated theoretical yields and current feedstock prices provided inputs to create comparative feedstock cost surfaces. Our analysis shows that, at current market prices, methane feedstock costs are consistently lower than glucose when used as a carbon and energy source for microbial chemical production. Conversely, methanol is costlier than glucose under almost all price scenarios. Acetate feedstock costs could be less than glucose given efficient acetate production from low-cost syngas using nascent biological gas to liquids (BIO-GTL) technologies. Furthermore, our analysis suggests that research should focus on overcoming the technical challenges of methane assimilation and/or yield of acetate via BIO-GTL to take advantage of low-cost natural gas rather than using methanol as a feedstock.« less

Biodegradation of alkaline lignin by Bacillus ligniniphilus L1

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhu, Daochen; Zhang, Peipei; Xie, Changxiao

Background: Lignin is the most abundant aromatic biopolymer in the biosphere and it comprises up to 30% of plant biomass. Although lignin is the most recalcitrant component of the plant cell wall, still there are microorganisms able to decompose it or degrade it. Fungi are recognized as the most widely used microbes for lignin degradation. However, bacteria have also been known to be able to utilize lignin as a carbon or energy source. Bacillus ligniniphilus L1 was selected in this study due to its capability to utilize alkaline lignin as a single carbon or energy source and its excellent abilitymore » to survive in extreme environments. Results: To investigate the aromatic metabolites of strain L1 decomposing alkaline lignin, GC-MS analyze was performed and fifteen single phenol ring aromatic compounds were identified. The dominant absorption peak included phenylacetic acid, 4-hydroxy-benzoicacid, and vanillic acid with the highest proportion of metabolites resulting in 42%. Comparison proteomic analysis were carried out for further study showed that approximately 1447 kinds of proteins were produced, 141 of which were at least 2-fold up-regulated with alkaline lignin as the single carbon source. The up-regulated proteins contents different categories in the biological functions of protein including lignin degradation, ABC transport system, environmental response factors, protein synthesis and assembly, etc. Conclusions: GC-MS analysis showed that alkaline lignin degradation of strain L1 produced 15 kinds of aromatic compounds. Comparison proteomic data and metabolic analysis showed that to ensure the degradation of lignin and growth of strain L1, multiple aspects of cells metabolism including transporter, environmental response factors, and protein synthesis were enhanced. Based on genome and proteomic analysis, at least four kinds of lignin degradation pathway might be present in strain L1, including a Gentisate pathway, the benzoic acid pathway and the β-ketoadipate pathway. The study provides an important basis for lignin degradation by bacteria.« less

Interannual variability in seagrass carbon and nitrogen stable isotopes from the Florida Keys National Marine Sanctuary, a preliminary study

NASA Astrophysics Data System (ADS)

Fourqurean, J. W.; Fourqurean, J. W.; Anderson, W. T.; Anderson, W. T.

2001-12-01

The shallow marine waters surrounding the southern tip of Florida provide an ideal environment for seagrasses, which are the most common benthic community in the region. Yet, these communities are susceptible to a variety of anthropogenic disturbances, especially changes in water quality caused by an increase the nutrient flux to the near shore environment. In order to better understand the carbon and nitrogen isotopic ratio in marine plants, an extensive times series analysis was constructed from quarterly sampling of Thalassia testudinum (the dominate species in the study area) from 1996 through 1998. Sites for study where selected from permanent stations within the Florida Keys National Marine Sanctuary (FKNMS), from both sides of the Florida Keys - two stations on the bay side and two stations on the reef side. These data will also help to constrain elements of the carbon and nitrogen cycles affecting this region. The data analyzed over the three year study period show unique cyclic trends associated with seasonal changes in primary productivity and potentially changes in the nitrogen and carbon pools. Additionally, the analysis of our time series indicates that isotope food web studies need to take into account spatial and temporal changes when evaluating trophic levels. The mean carbon and nitrogen isotope values of T. testudinum from all 4 stations vary respectively from -7.2 per mil to -10.41 and 1.1 per mil to 2.2 per mil (n = 48). However, certain stations displayed anonymously depleted nitrogen isotope values, values as low as -1.2 per mil. These values potentially indicated that biogeochmical processes like N fixation, ammonification and denitrification cause regional pattern in the isotopic composition of the source DIN. Both carbon and nitrogen isotopes displayed seasonal enrichment-depletion trends, with maximum enrichment occurring during the summer. The overall seasonal variation for carbon 13 from the different stations ranged from 1 per mil to greater than 3 per mil; whereas seasonal variations in d15N between different stations ranged from about 1 per mil to greater than 5 per mil. Additionally certain sites showed a positive isotope values and productivity. These data indicate a high degree of seasonal variability due to changes in productivity, environmental parameters, and oceanographic controls. The more open settings are not restricted by the temperature changes occurring in the shallower water sites. Additionally, carbon and nitrogen sources can change due to the mineralization of OM from different sources from nearby mangrove islands and/or the Everglades to the north.

Source term model evaluations for the low-level waste facility performance assessment

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yim, M.S.; Su, S.I.

1995-12-31

The estimation of release of radionuclides from various waste forms to the bottom boundary of the waste disposal facility (source term) is one of the most important aspects of LLW facility performance assessment. In this work, several currently used source term models are comparatively evaluated for the release of carbon-14 based on a test case problem. The models compared include PRESTO-EPA-CPG, IMPACTS, DUST and NEFTRAN-II. Major differences in assumptions and approaches between the models are described and key parameters are identified through sensitivity analysis. The source term results from different models are compared and other concerns or suggestions are discussed.

Deposition of amorphous carbon thin films by aerosol-assisted CVD method

NASA Astrophysics Data System (ADS)

Fadzilah, A. N.; Dayana, K.; Rusop, M.

2018-05-01

This paper reports on the deposition of amorphous carbon (a-C) by Aerosol-assisted Chemical Vapor Deposition (AACVD) using natural source of camphor oil as the precursor material. 4 samples were deposited at 4 different deposition flow rate from 15 sccm to 20 sccm, with 5 sccm interval for each sample. The analysis includes the electrical, optical and structural analysis of the data. The a-C structure which came from the manipulation of synthesis parameter was characterized by the solar simulator system, UV-VIS-NIR, Raman spectroscope and AFM. The properties of a-C are highly dependent on the deposition techniques and deposition parameters; hence the influences of gas flow rate were studied.

Hydrogeologic and geospatial data for the assesment of focused recharge to the Carbonate-Rock Aquifer in Genesee County, New York

USGS Publications Warehouse

Reddy, James E.; Kappel, William M.

2010-01-01

Existing hydrogeologic and geospatial data useful for the assessment of focused recharge to the carbonate-rock aquifer in the central part of Genesee County, NY, were compiled from numerous local, State, and Federal agency sources. Data sources utilized in this pilot study include available geospatial datasets from Federal and State agencies, interviews with local highway departments and the Genesee County Soil and Water Conservation District, and an initial assessment of karst features through the analysis of ortho-photographs, with minimal field verification. The compiled information is presented in a series of county-wide and quadrangle maps. The county-wide maps present generalized hydrogeologic conditions including distribution of geologic units, major faults, and karst features, and bedrock-surface and water-table configurations. Ten sets of quadrangle maps of the area that overlies the carbonate-rock aquifer present more detailed and additional information including distribution of bedrock outcrops, thin and (or) permeable soils, and karst features such as sinkholes and swallets. Water-resource managers can utilize the information summarized in this report as a guide to their assessment of focused recharge to, and the potential for surface contaminants to reach the carbonate-rock aquifer.

Carbon isotope signature of dissolved inorganic carbon (DIC) in precipitation and atmospheric CO2.

PubMed

Górka, Maciej; Sauer, Peter E; Lewicka-Szczebak, Dominika; Jędrysek, Mariusz-Orion

2011-01-01

This paper describes results of chemical and isotopic analysis of inorganic carbon species in the atmosphere and precipitation for the calendar year 2008 in Wrocław (SW Poland). Atmospheric air samples (collected weekly) and rainwater samples (collected after rain episodes) were analysed for CO2 and dissolved inorganic carbon (DIC) concentrations and for δ13C composition. The values obtained varied in the ranges: atmospheric CO2: 337-448 ppm; δ13CCO2 from -14.4 to -8.4‰; DIC in precipitation: 0.6-5.5 mg dm(-3); δ13CDIC from -22.2 to +0.2‰. No statistical correlation was observed between the concentration and δ13C value of atmospheric CO2 and DIC in precipitation. These observations contradict the commonly held assumption that atmospheric CO2 controls the DIC in precipitation. We infer that DIC is generated in ambient air temperatures, but from other sources than the measured atmospheric CO2. The calculated isotopic composition of a hypothetical CO2 source for DIC forming ranges from -31.4 to -11.0‰, showing significant seasonal variations accordingly to changing anthropogenic impact and atmospheric mixing processes. Copyright © 2010 Elsevier Ltd. All rights reserved.

Dissolved Organic Carbon Mobilisation in a Groundwater System Stressed by Pumping

PubMed Central

Graham, P. W.; Baker, A.; Andersen, M. S.

2015-01-01

The concentration and flux of organic carbon in aquifers is influenced by recharge and abstraction, and surface and subsurface processing. In this study groundwater was abstracted from a shallow fractured rock aquifer and dissolved organic carbon (DOC) was measured in observation bores at different distances from the abstraction bore. Groundwater abstraction at rates exceeding the aquifers yield resulted in increased DOC concentration up to 3,500 percent of initial concentrations. Potential sources of this increased DOC were determined using optical fluorescence and absorbance analysis. Groundwater fluorescent dissolved organic material (FDOM) were found to be a combination of terrestrial-derived humic material and microbial or protein sourced material. Relative molecular weight of FDOM within four metres of the abstraction well increased during the experiment, while the relative molecular weight of FDOM between four and ten metres from the abstraction well decreased. When the aquifer is not being pumped, DOC mobilisation in the aquifer is low. We hypothesise that the physical shear stress on aquifer materials caused by intense abstraction significantly increases the temporary release of DOC from sloughing of biofilms and release of otherwise bound colloidal and sedimentary organic carbon (SOC). PMID:26691238

Variability in the carbon isotope composition of individual amino acids in plant proteins from different sources: 1 Leaves.

PubMed

Lynch, Anthony H; Kruger, Nicholas J; Hedges, Robert E M; McCullagh, James S O

2016-05-01

The natural carbon isotope composition of individual amino acids from plant leaf proteins has been measured to establish potential sources of variability. The plant leaves studied, taken from a range of plant groups (forbs, trees, grasses, and freshwater aquatic plants), showed no significant influence of either season or environment (water and light availability) on their Δδ(13)C values. Plant groups did, however, differ in carbon isotope composition, although no consistent differences were identified at the species level. A discriminant analysis model was constructed which allowed leaves from (1) nettles, (2) Pooideae, (3) other Poales, (4) trees and (5) freshwater higher plants to be distinguished from each other on the basis of their natural abundance (13)C/(12)C ratios of individual amino acids. Differences in carbon isotope composition are known to be retained, to some extent, in the tissues of their consumers, and hence an understanding of compound-specific variation in (13)C/(12)C fractional abundance in plants has the potential to provide dietary insights of value in archaeological and ecological studies. Copyright © 2016 Elsevier Ltd. All rights reserved.

A mixing-model approach to quantifying sources of organic matter to salt marsh sediments

NASA Astrophysics Data System (ADS)

Bowles, K. M.; Meile, C. D.

2010-12-01

Salt marshes are highly productive ecosystems, where autochthonous production controls an intricate exchange of carbon and energy among organisms. The major sources of organic carbon to these systems include 1) autochthonous production by vascular plant matter, 2) import of allochthonous plant material, and 3) phytoplankton biomass. Quantifying the relative contribution of organic matter sources to a salt marsh is important for understanding the fate and transformation of organic carbon in these systems, which also impacts the timing and magnitude of carbon export to the coastal ocean. A common approach to quantify organic matter source contributions to mixtures is the use of linear mixing models. To estimate the relative contributions of endmember materials to total organic matter in the sediment, the problem is formulated as a constrained linear least-square problem. However, the type of data that is utilized in such mixing models, the uncertainties in endmember compositions and the temporal dynamics of non-conservative entitites can have varying affects on the results. Making use of a comprehensive data set that encompasses several endmember characteristics - including a yearlong degradation experiment - we study the impact of these factors on estimates of the origin of sedimentary organic carbon in a saltmarsh located in the SE United States. We first evaluate the sensitivity of linear mixing models to the type of data employed by analyzing a series of mixing models that utilize various combinations of parameters (i.e. endmember characteristics such as δ13COC, C/N ratios or lignin content). Next, we assess the importance of using more than the minimum number of parameters required to estimate endmember contributions to the total organic matter pool. Then, we quantify the impact of data uncertainty on the outcome of the analysis using Monte Carlo simulations and accounting for the uncertainty in endmember characteristics. Finally, as biogeochemical processes can alter endmember characteristics over time, we investigate the effect of early diagenesis on chosen parameters, an analysis that entails an assessment of the organic matter age distribution. Thus, estimates of the relative contributions of phytoplankton, C3 and C4 plants to bulk sediment organic matter depend not only on environmental characteristics that impact reactivity, but also on sediment mixing processes.

[Effects of carbon sources changes on the property and morphology of 2,4-D degraded aerobic sludge granules].

PubMed

Ma, Jing-Yun; Quan, Xian-Chun; Xiong, Wei-Cong

2010-11-01

This study investigated the changes of the morphology, structure, and capability of removing the target contamination of the aerobic granules pre-cultured with mixed substrates of glucose and 2,4-dichlorophenoxyacetic acid (2,4-D) in a long-time running sequence batch reactor (SBR), when the carbon source transformed into the sole carbon source of 2,4-D. Results showed that when the substrate turned to the sole carbon source of 2,4-D, the aerobic granules still maintained a strong degradation ability to the target contamination; a 2,4-D removal percentage of 99.2% -100% and an average COD removal rate of 85.6% were achieved at the initial 2,4-D concentration of 361-564 mg/L. Carbon source transformation caused certain damages to the original aerobic granule structure, made some parts of granules disintegrated, and led to granule size decline from 513 microm to 302 microm. However, those granules maintained the main body, re-aggregated and grew after a period of adaptation due to their strong resistance to toxicity. Aerobic granules capable of utilizing 2,4-D as the sole carbon source with a good settling ability (SYI 20-40 mL/g) and a mean diameter of 489 microm were finally obtained in this study. Scanning electron microscope (SEM) observation showed that the diversity of granule microbial species was declined when turned to the sole carbon source.

Differences in carbon source utilisation by orchid mycorrhizal fungi from common and endangered species of Caladenia (Orchidaceae).

PubMed

Mehra, S; Morrison, P D; Coates, F; Lawrie, A C

2017-02-01

Terrestrial orchids depend on orchid mycorrhizal fungi (OMF) as symbionts for their survival, growth and nutrition. The ability of OMF from endangered orchid species to compete for available resources with OMF from common species may affect the distribution, abundance and therefore conservation status of their orchid hosts. Eight symbiotically effective OMF from endangered and more common Caladenia species were tested for their ability to utilise complex insoluble and simple soluble carbon sources produced during litter degradation by growth with different carbon sources in liquid medium to measure the degree of OMF variation with host conservation status or taxonomy. On simple carbon sources, fungal growth was assessed by biomass. On insoluble substrates, ergosterol content was assessed using ultra-performance liquid chromatography (UPLC). The OMF grew on all natural materials and complex carbon sources, but produced the greatest biomass on xylan and starch and the least on bark and chitin. On simple carbon sources, the greatest OMF biomass was measured on most hexoses and disaccharides and the least on galactose and arabinose. Only some OMF used sucrose, the most common sugar in green plants, with possible implications for symbiosis. OMF from common orchids produced more ergosterol and biomass than those from endangered orchids in the Dilatata and Reticulata groups but not in the Patersonii and Finger orchids. This suggests that differences in carbon source utilisation may contribute to differences in the distribution of some orchids, if these differences are retained on site.

Production of polyhydroxybutyrate by the marine photosynthetic bacterium Rhodovulum sulfidophilum P5

NASA Astrophysics Data System (ADS)

Cai, Jinling; Wei, Ying; Zhao, Yupeng; Pan, Guanghua; Wang, Guangce

2012-07-01

The effects of different NaCl concentrations, nitrogen sources, carbon sources, and carbon to nitrogen molar ratios on biomass accumulation and polyhydroxybutyrate (PHB) production were studied in batch cultures of the marine photosynthetic bacterium Rhodovulum sulfidophilum P5 under aerobic-dark conditions. The results show that the accumulation of PHB in strain P5 is a growth-associated process. Strain P5 had maximum biomass and PHB accumulation at 2%-3% NaCl, suggesting that the bacterium can maintain growth and potentially produce PHB at natural seawater salinity. In the nitrogen source test, the maximum biomass accumulation (8.10±0.09 g/L) and PHB production (1.11±0.13 g/L and 14.62%±2.2 of the cell dry weight) were observed when peptone and ammonium chloride were used as the sole nitrogen source. NH{4/+}-N was better for PHB production than other nitrogen sources. In the carbon source test, the maximum biomass concentration (7.65±0.05 g/L) was obtained with malic acid as the sole carbon source, whereas the maximum yield of PHB (5.03±0.18 g/L and 66.93%±1.69% of the cell dry weight) was obtained with sodium pyruvate as the sole carbon source. In the carbon to nitrogen ratios test, sodium pyruvate and ammonium chloride were selected as the carbon and nitrogen sources, respectively. The best carbon to nitrogen molar ratio for biomass accumulation (8.77±0.58 g/L) and PHB production (6.07±0.25 g/L and 69.25%±2.05% of the cell dry weight) was 25. The results provide valuable data on the production of PHB by R. sulfidophilum P5 and further studies are on-going for best cell growth and PHB yield.

Carbon Concentration and Carbon-to-Nitrogen Ratio Influence Submerged-Culture Conidiation by the Potential Bioherbicide Colletotrichum truncatum NRRL 13737

PubMed Central

Jackson, Mark A.; Bothast, Rodney J.

1990-01-01

We assessed the influence of various carbon concentrations and carbon-to-nitrogen (C:N) ratios on Colletotrichum truncatum NRRL 13737 conidium formation in submerged cultures grown in a basal salts medium containing various amounts of glucose and Casamino Acids. Under the nutritional conditions tested, the highest conidium concentrations were produced in media with carbon concentrations of 4.0 to 15.3 g/liter. High carbon concentrations (20.4 to 40.8 g/liter) inhibited sporulation and enhanced the formation of microsclerotiumlike hyphal masses. At all the carbon concentrations tested, a culture grown in a medium with a C:N ratio of 15:1 produced more conidia than cultures grown in media with C:N ratios of 40:1 or 5:1. While glucose exhaustion was often coincident with conidium formation, cultures containing residual glucose sporulated and those with high carbon concentrations (>25 g/liter) exhausted glucose without sporulation. Nitrogen source studies showed that the levels of C. truncatum NRRL 13737 conidiation were similar for all protein hydrolysates tested. Reduced conidiation occurred when amino acid and inorganic nitrogen sources were used. Of the nine carbon sources evaluated, acetate as the sole carbon source resulted in the lowest level of sporulation. Images PMID:16348348

Abundances and implications of volatile-bearing species from evolved gas analysis of the Rocknest aeolian deposit, Gale Crater, Mars

NASA Astrophysics Data System (ADS)

Archer, Paul Douglas; Franz, Heather B.; Sutter, Brad; Arevalo, Ricardo D.; Coll, Patrice; Eigenbrode, Jennifer L.; Glavin, Daniel P.; Jones, John J.; Leshin, Laurie A.; Mahaffy, Paul R.; McAdam, Amy C.; McKay, Christopher P.; Ming, Douglas W.; Morris, Richard V.; Navarro-González, Rafael; Niles, Paul B.; Pavlov, Alex; Squyres, Steven W.; Stern, Jennifer C.; Steele, Andrew; Wray, James J.

2014-01-01

The Sample Analysis at Mars (SAM) instrument on the Mars Science Laboratory (MSL) rover Curiosity detected evolved gases during thermal analysis of soil samples from the Rocknest aeolian deposit in Gale Crater. Major species detected (in order of decreasing molar abundance) were H2O, SO2, CO2, and O2, all at the µmol level, with HCl, H2S, NH3, NO, and HCN present at the tens to hundreds of nmol level. We compute weight % numbers for the major gases evolved by assuming a likely source and calculate abundances between 0.5 and 3 wt.%. The evolution of these gases implies the presence of both oxidized (perchlorates) and reduced (sulfides or H-bearing) species as well as minerals formed under alkaline (carbonates) and possibly acidic (sulfates) conditions. Possible source phases in the Rocknest material are hydrated amorphous material, minor clay minerals, and hydrated perchlorate salts (all potential H2O sources), carbonates (CO2), perchlorates (O2 and HCl), and potential N-bearing materials (e.g., Martian nitrates, terrestrial or Martian nitrogenated organics, ammonium salts) that evolve NH3, NO, and/or HCN. We conclude that Rocknest materials are a physical mixture in chemical disequilibrium, consistent with aeolian mixing, and that although weathering is not extensive, it may be ongoing even under current Martian surface conditions.

The influence of different nitrogen and carbon sources on mycotoxin production in Alternaria alternata.

PubMed

Brzonkalik, Katrin; Herrling, Tanja; Syldatk, Christoph; Neumann, Anke

2011-05-27

The aim of this study was to determine the influence of different carbon and nitrogen sources on the production of the mycotoxins alternariol (AOH), alternariol monomethyl ether (AME) and tenuazonic acid (TA) by Alternaria alternata at 28°C using a semi-synthetic medium (modified Czapek-Dox broth) supplemented with nitrogen and carbon sources. Additionally the effect of shaken and static cultivation on mycotoxin production was tested. Initial experiments showed a clear dependency between nitrogen depletion and mycotoxin production. To assess whether nitrogen limitation in general or the type of nitrogen source triggers the production, various nitrogen sources including several ammonium/nitrate salts and amino acids were tested. In static culture the production of AOH/AME can be enhanced greatly with phenylalanine whereas some nitrogen sources seem to inhibit the AOH/AME production completely. TA was not significantly affected by the choice of nitrogen source. In shaken culture the overall production of all mycotoxins was lower compared to static cultivation. Furthermore tests with a wide variety of carbon sources including monosaccharides, disaccharides, complex saccharides such as starch as well as glycerol and acetate were performed. In shaken culture AOH was produced when glucose, fructose, sucrose, acetate or mixtures of glucose/sucrose and glucose/acetate were used as carbon sources. AME production was not detected. The use of sodium acetate resulted in the highest AOH production. In static culture AOH production was also stimulated by acetate and the amount is comparable to shaken conditions. Under static conditions production of AOH was lower except when cultivated with acetate. In static cultivation 9 of 14 tested carbon sources induced mycotoxin production compared to 4 in shaken culture. This is the first study which analyses the influence of carbon and nitrogen sources in a semi-synthetic medium and assesses the effects of culture conditions on mycotoxin production by A. alternata. Copyright © 2011 Elsevier B.V. All rights reserved.

Carbon utilization profiles of river bacterial strains facing sole carbon sources suggest metabolic interactions.

PubMed

Goetghebuer, Lise; Servais, Pierre; George, Isabelle F

2017-05-01

Microbial communities play a key role in water self-purification. They are primary drivers of biogenic element cycles and ecosystem processes. However, these communities remain largely uncharacterized. In order to understand the diversity-heterotrophic activity relationship facing sole carbon sources, we assembled a synthetic community composed of 20 'typical' freshwater bacterial species mainly isolated from the Zenne River (Belgium). The carbon source utilization profiles of each individual strain and of the mixed community were measured in Biolog Phenotype MicroArrays PM1 and PM2A microplates that allowed testing 190 different carbon sources. Our results strongly suggest interactions occurring between our planktonic strains as our synthetic community showed metabolic properties that were not displayed by its single components. Finally, the catabolic performances of the synthetic community and a natural community from the same sampling site were compared. The synthetic community behaved like the natural one and was therefore representative of the latter in regard to carbon source consumption. © FEMS 2017. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Placing barrier-island transgression in a blue-carbon context

NASA Astrophysics Data System (ADS)

Theuerkauf, Ethan J.; Rodriguez, Antonio B.

2017-07-01

Backbarrier saltmarshes are considered carbon sinks; however, barrier island transgression and the associated processes of erosion and overwash are typically not included in coastal carbon budgets. Here, we present a carbon-budget model for transgressive barrier islands that includes a dynamic carbon-storage term, driven by backbarrier-marsh width, and a carbon-export term, driven by ocean and backbarrier shoreline erosion. To examine the impacts of storms, human disturbances and the backbarrier setting of a transgressive barrier island on carbon budgets and reservoirs, the model was applied to sites at Core Banks and Onslow Beach, NC, USA. Results show that shoreline erosion and burial of backbarrier marsh from washover deposition and dredge-spoil disposal temporarily transitioned each site into a net exporter (source) of carbon. The magnitude of the carbon reservoir was linked to the backbarrier setting of an island. Carbon reservoirs of study sites separated from the mainland by only backbarrier marsh (no lagoon) decreased for over a decade because carbon storage could not keep pace with erosion. With progressive narrowing of the backbarrier marsh, these barriers will begin to function more persistently as carbon sources until the reservoir is depleted at the point where the barrier welds with the mainland. Undeveloped barrier islands with wide lagoons are carbon sources briefly during erosive periods; however, at century time scales are net carbon importers (sinks) because new marsh habitat can form during barrier rollover. Human development on backbarrier saltmarsh serves to reduce the carbon storage capacity and can hasten the transition of an island from a sink to a source.

Organic markers as source discriminants and sediment transport indicators in south San Francisco Bay, California

USGS Publications Warehouse

Hostettler, F.D.; Rapp, J.B.; Kvenvolden, K.A.; Samuel, N L.

1989-01-01

Sediment samples from nearshore sites in south San Francisco Bay and from streams flowing into that section of the Bay have been characterized in terms of their content of biogenic and anthropogenic molecular marker compounds. The distributions, input sources, and applicability of these compounds in determining sediment movement are discussed. By means of inspection and multivariate analysis, the compounds were grouped according to probable input sources and the sampling stations according to the relative importance of source contributions. A suite of polycyclic aromatic hydrocarbons (PAHs) dominated by pyrene, fluoranthene and phenanthrene, typical of estuarine environments worldwide, and suites of mature sterane and hopane biomarkers were found to be most suitable as background markers for the Bay. A homologous series of long-chain n-aldehydes (C12-C32) with a strong even-over-odd carbon number dominance in the higher molecular weight range and the ubiquitous n-alkanes (n-C24-C34) with a strong odd-over-even carbon number dominance were utilized as terrigenous markers. Several ratios of these terrigenous and Bay markers were calculated for each station. These ratios and the statistical indicators from the multivariate analysis point toward a strong terrigenous signal in the terminus of South Bay and indicate net directional movement of recently introduced sediment where nontidal currents had been considered to be minimal or nonexistent and tidal currents had been assumed to be dominant. ?? 1989.

Metabolic flux analysis of the mixotrophic metabolisms in the green sulfur bacterium Chlorobaculum tepidum.

PubMed

Feng, Xueyang; Tang, Kuo-Hsiang; Blankenship, Robert E; Tang, Yinjie J

2010-12-10

The photosynthetic green sulfur bacterium Chlorobaculum tepidum assimilates CO(2) and organic carbon sources (acetate or pyruvate) during mixotrophic growth conditions through a unique carbon and energy metabolism. Using a (13)C-labeling approach, this study examined biosynthetic pathways and flux distributions in the central metabolism of C. tepidum. The isotopomer patterns of proteinogenic amino acids revealed an alternate pathway for isoleucine synthesis (via citramalate synthase, CimA, CT0612). A (13)C-assisted flux analysis indicated that carbons in biomass were mostly derived from CO(2) fixation via three key routes: the reductive tricarboxylic acid (RTCA) cycle, the pyruvate synthesis pathway via pyruvate:ferredoxin oxidoreductase, and the CO(2)-anaplerotic pathway via phosphoenolpyruvate carboxylase. During mixotrophic growth with acetate or pyruvate as carbon sources, acetyl-CoA was mainly produced from acetate (via acetyl-CoA synthetase) or citrate (via ATP citrate lyase). Pyruvate:ferredoxin oxidoreductase converted acetyl-CoA and CO(2) to pyruvate, and this growth-rate control reaction is driven by reduced ferredoxin generated during phototrophic growth. Most reactions in the RTCA cycle were reversible. The relative fluxes through the RTCA cycle were 80∼100 units for mixotrophic cultures grown on acetate and 200∼230 units for cultures grown on pyruvate. Under the same light conditions, the flux results suggested a trade-off between energy-demanding CO(2) fixation and biomass growth rate; C. tepidum fixed more CO(2) and had a higher biomass yield (Y(X/S), mole carbon in biomass/mole substrate) in pyruvate culture (Y(X/S) = 9.2) than in acetate culture (Y(X/S) = 6.4), but the biomass growth rate was slower in pyruvate culture than in acetate culture.

Development of a semigraphitic sulfur-doped ordered mesoporous carbon material for electroanalytical applications

DOE Office of Scientific and Technical Information (OSTI.GOV)

Maluta, Jaqueline R.; Machado, Sergio A. S.; Chaudhary, Umesh

The modification of traditional electrodes with mesoporous carbons is a promising strategy to produce high performance electrodes for electrochemical sensing. The high surface area of mesoporous carbons provides a large number of electroactive sites for binding analytes. Controlling the pore size and structure of mesoporous carbons and modifying their electronic properties via doping offers additional benefits like maximizing transport and tuning the electrochemical processes associated with analyte detection. This work reports a facile method to produce sulfur-doped ordered mesoporous carbon materials (S-OMC) with uniform pore structure, large pore volume, high surface area and semigraphitic structure. The synthesis used thiophenol asmore » a single source of carbon and sulfur, and iron as a catalyst for low temperature carbonization. The S-OMC material was deposited on a glassy carbon electrode and used as a sensor with high sensitivity (11.7 A L mol-1) and selectivity for chloramphenicol detection in presence of other antibiotics. As a proof-of-concept, the sensor was applied to the direct analysis of the drug in reconstituted powdered milk and in commercial eye drops.« less

Development of a semigraphitic sulfur-doped ordered mesoporous carbon material for electroanalytical applications

DOE PAGES

Maluta, Jaqueline R.; Machado, Sergio A. S.; Chaudhary, Umesh; ...

2017-10-29

The modification of traditional electrodes with mesoporous carbons is a promising strategy to produce high performance electrodes for electrochemical sensing. The high surface area of mesoporous carbons provides a large number of electroactive sites for binding analytes. Controlling the pore size and structure of mesoporous carbons and modifying their electronic properties via doping offers additional benefits like maximizing transport and tuning the electrochemical processes associated with analyte detection. This work reports a facile method to produce sulfur-doped ordered mesoporous carbon materials (S-OMC) with uniform pore structure, large pore volume, high surface area and semigraphitic structure. The synthesis used thiophenol asmore » a single source of carbon and sulfur, and iron as a catalyst for low temperature carbonization. The S-OMC material was deposited on a glassy carbon electrode and used as a sensor with high sensitivity (11.7 A L mol-1) and selectivity for chloramphenicol detection in presence of other antibiotics. As a proof-of-concept, the sensor was applied to the direct analysis of the drug in reconstituted powdered milk and in commercial eye drops.« less

Structural evolution of detonation carbon in Composition B-3 by X-ray scattering

NASA Astrophysics Data System (ADS)

Firestone, Millicent; Dattelbaum, Dana; Gustavsen, Richard; Podlesak, David; Jensen, Brian; Watkins, Erik; Ringstrand, Bryan; Willey, Trevor; Lauderbach, Lisa; Hodgin, Ralph; Bagge-Hansen, Michael; van Buuren, Tony; Graber, Tim

2015-06-01

High explosive detonation products are primarily composed of solid carbon products. Prior electron microscopy studies have revealed that detonation carbon can contain a variety of unique carbon particles possessing novel morphologies, including core-shell, onions and ribbons. Despite these observations very little is known on what conditions leads to the production of novel carbon nanoparticles. A fuller understanding on conditions that generate such novel carbon materials would greatly benefit from time-resolved studies that probe particle formation and evolution through and beyond the chemical reaction zone. Here, we report initial experiments employing time-resolved X-ray scattering measurements to monitor the detonation carbon products formed from Composition B-3 (60% TNT, 40% RDX). Time-resolved SAXS (TRSAXS) studies were performed at the Dynamic Compression Sector (DCS, Sector 35) at the Advanced Photon Source (Argonne National Laboratory). In-situ formation of solid carbon behind the detonation front was probed on the nanosecond time scale. Analysis of the scattering patterns using model independent methods (Porod and Guinier) yielded insights into particle morphology and interfaces.

Lignin-Derived Advanced Carbon Materials

DOE PAGES

Chatterjee, Sabornie; Saito, Tomonori

2015-11-16

Lignin is a highly abundant source of renewable carbon that can be considered as a valuable sustainable source of biobased materials. By applying specific pretreatments and manufacturing methods, it has been found that lignin can be converted into a variety of value-added carbon materials. However, the physical and chemical heterogeneities of lignin complicate its use as a feedstock. Herein, we discuss the lignin manufacturing process, the effects of pretreatments and manufacturing methods on the properties of product lignin, and structure–property relationships in various applications of lignin-derived carbon materials, such as carbon fibers, carbon mats, activated carbons, carbon films, and templatedmore » carbon.« less

Lignin-Derived Advanced Carbon Materials

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chatterjee, Sabornie; Saito, Tomonori

Lignin is a highly abundant source of renewable carbon that can be considered as a valuable sustainable source of biobased materials. By applying specific pretreatments and manufacturing methods, it has been found that lignin can be converted into a variety of value-added carbon materials. However, the physical and chemical heterogeneities of lignin complicate its use as a feedstock. Herein, we discuss the lignin manufacturing process, the effects of pretreatments and manufacturing methods on the properties of product lignin, and structure–property relationships in various applications of lignin-derived carbon materials, such as carbon fibers, carbon mats, activated carbons, carbon films, and templatedmore » carbon.« less

Estimating national forest carbon stocks and dynamics: combining models and remotely sensed information

NASA Astrophysics Data System (ADS)

Smallman, Luke; Williams, Mathew

2016-04-01

Forests are a critical component of the global carbon cycle, storing significant amounts of carbon, split between living biomass and dead organic matter. The carbon budget of forests is the most uncertain component of the global carbon cycle - it is currently impossible to quantify accurately the carbon source/sink strength of forest biomes due to their heterogeneity and complex dynamics. It has been a major challenge to generate robust carbon budgets across landscapes due to data scarcity. Models have been used but outputs have lacked an assessment of uncertainty, making a robust assessment of their reliability and accuracy challenging. Here a Metropolis Hastings - Markov Chain Monte Carlo (MH-MCMC) data assimilation framework has been used to combine remotely sensed leaf area index (MODIS), biomass (where available) and deforestation estimates, in addition to forest planting and clear-felling information from the UK's national forest inventory, an estimate of soil carbon from the Harmonized World Database (HWSD) and plant trait information with a process model (DALEC) to produce a constrained analysis with a robust estimate of uncertainty of the UK forestry carbon budget between 2000 and 2010. Our analysis estimates the mean annual UK forest carbon sink at -3.9 MgC ha-1yr-1 with a 95 % confidence interval between -4.0 and -3.1 MgC ha-1 yr-1. The UK national forest inventory (NFI) estimates the mean UK forest carbon sink to be between -1.4 and -5.5 MgC ha-1 yr-1. The analysis estimate for total forest biomass stock in 2010 is estimated at 229 (177/232) TgC, while the NFI an estimated total forest biomass carbon stock of 216 TgC. Leaf carbon area (LCA) is a key plant trait which we are able to estimate using our analysis. Comparison of median estimates for LCA retrieved from the analysis and a UK land cover map show higher and lower values for LCA are estimated areas dominated by needle leaf and broad leaf forests forest respectively, consistent with ecological expectations. Moreover, the retrieved LCA is positively correlated with leaf-life span and negatively correlated with allocation of photosynthate to foliage, supported by field observations. This emergence of key plant traits and correlations between traits increases our confidence in the robustness of this analysis. Furthermore, this framework also allows us to search for additional emergent properties from the analysis such as spatial variation of retrieved drought tolerance. Finally our analysis is able to identify components of the carbon cycle with the largest uncertainty providing targets for future observations (e.g. remotely sensed biomass). Our Bayesian analysis system is ideally suited for assimilation of multiple biomass estimates and their associated uncertainties to reduce both uncertainty in the state of the system but also process parameters (e.g. wood residence time).

Young organic matter as a source of carbon dioxide outgassing from Amazonian rivers

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mayorga, E; Aufdenkampe, A K; Masiello, C A

2005-06-23

Rivers are generally supersaturated with respect to carbon dioxide, resulting in large gas evasion fluxes that can be a significant component of regional net carbon budgets. Amazonian rivers were recently shown to outgas more than ten times the amount of carbon exported to the ocean in the form of total organic carbon or dissolved inorganic carbon. High carbon dioxide concentrations in rivers originate largely from in situ respiration of organic carbon, but little agreement exists about the sources or turnover times of this carbon. Here we present results of an extensive survey of the carbon isotope composition ({sup 13}C andmore » {sup 14}C) of dissolved inorganic carbon and three size-fractions of organic carbon across the Amazonian river system. We find that respiration of contemporary organic matter (less than 5 years old) originating on land and near rivers is the dominant source of excess carbon dioxide that drives outgassing in mid-size to large rivers, although we find that bulk organic carbon fractions transported by these rivers range from tens to thousands of years in age. We therefore suggest that a small, rapidly cycling pool of organic carbon is responsible for the large carbon fluxes from land to water to atmosphere in the humid tropics.« less

Electrochemical process for the preparation of nitrogen fertilizers

DOEpatents

Aulich, Ted R.; Olson, Edwin S.; Jiang, Junhua

2013-03-19

The present invention provides methods and apparatus for the preparation of nitrogen fertilizers including ammonium nitrate, urea, urea-ammonium nitrate, and/or ammonia utilizing a source of carbon, a source of nitrogen, and/or a source of hydrogen. Implementing an electrolyte serving as ionic charge carrier, (1) ammonium nitrate is produced via the reduction of a nitrogen source at the cathode and the oxidation of a nitrogen source at the anode; (2) urea or its isomers are produced via the simultaneous cathodic reduction of a carbon source and a nitrogen source; (3) ammonia is produced via the reduction of nitrogen source at the cathode and the oxidation of a hydrogen source at the anode; and (4) urea-ammonium nitrate is produced via the simultaneous cathodic reduction of a carbon source and a nitrogen source, and anodic oxidation of a nitrogen source. The electrolyte can be solid.

Analysis of Two-Component Systems in Group B Streptococcus Shows That RgfAC and the Novel FspSR Modulate Virulence and Bacterial Fitness

PubMed Central

Faralla, Cristina; Metruccio, Matteo M.; De Chiara, Matteo; Mu, Rong; Patras, Kathryn A.; Muzzi, Alessandro; Grandi, Guido; Margarit, Immaculada; Doran, Kelly S.

2014-01-01

ABSTRACT Group B Streptococcus (GBS), in the transition from commensal organisms to pathogens, will encounter diverse host environments and, thus, require coordinated control of the transcriptional responses to these changes. This work was aimed at better understanding the role of two-component signal transduction systems (TCS) in GBS pathophysiology through a systematic screening procedure. We first performed a complete inventory and sensory mechanism classification of all putative GBS TCS by genomic analysis. Five TCS were further investigated by the generation of knockout strains, and in vitro transcriptome analysis identified genes regulated by these systems, ranging from 0.1% to 3% of the genome. Interestingly, two sugar phosphotransferase systems appeared to be differentially regulated in the TCS-16 knockout strain (TCS loci were numbered in order of their appearance on the chromosome), suggesting an involvement in monitoring carbon source availability. High-throughput analysis of bacterial growth on different carbon sources showed that TCS-16 was necessary for the growth of GBS on fructose-6-phosphate. Additional transcriptional analysis provided further evidence for a stimulus-response circuit where extracellular fructose-6-phosphate leads to autoinduction of TCS-16, with concomitant dramatic upregulation of the adjacent operon, which encodes a phosphotransferase system. The TCS-16-deficient strain exhibited decreased persistence in a model of vaginal colonization. All mutant strains were also characterized in a murine model of systemic infection, and inactivation of TCS-17 (also known as RgfAC) resulted in hypervirulence. Our data suggest a role for the previously unknown TCS-16, here named FspSR, in bacterial fitness and carbon metabolism during host colonization, and the data also provide experimental evidence for TCS-17/RgfAC involvement in virulence. PMID:24846378

Pyrolysis reactor and fluidized bed combustion chamber

DOEpatents

Green, Norman W.

1981-01-06

A solid carbonaceous material is pyrolyzed in a descending flow pyrolysis reactor in the presence of a particulate source of heat to yield a particulate carbon containing solid residue. The particulate source of heat is obtained by educting with a gaseous source of oxygen the particulate carbon containing solid residue from a fluidized bed into a first combustion zone coupled to a second combustion zone. A source of oxygen is introduced into the second combustion zone to oxidize carbon monoxide formed in the first combustion zone to heat the solid residue to the temperature of the particulate source of heat.

Method for making an energetic material

DOEpatents

Fox, Robert V [Idaho Falls, ID

2008-03-18

A method for making trinitrotoluene is described, and which includes the steps of providing a source of aqueous nitric acid having a concentration of less than about 95% by weight; mixing a surfactant with the source of aqueous nitric acid so as to dehydrate the aqueous nitric acid to produce a source of nitronium ions; providing a supercritical carbon dioxide environment; providing a source of an organic material to be nitrated to the supercritical carbon dioxide environment; and controllably mixing the source or nitronium ions with the supercritical carbon dioxide environment to nitrate the organic material and produce trinitrotoluene.

Forest soil carbon is threatened by intensive biomass harvesting.

PubMed

Achat, David L; Fortin, Mathieu; Landmann, Guy; Ringeval, Bruno; Augusto, Laurent

2015-11-04

Forests play a key role in the carbon cycle as they store huge quantities of organic carbon, most of which is stored in soils, with a smaller part being held in vegetation. While the carbon storage capacity of forests is influenced by forestry, the long-term impacts of forest managers' decisions on soil organic carbon (SOC) remain unclear. Using a meta-analysis approach, we showed that conventional biomass harvests preserved the SOC of forests, unlike intensive harvests where logging residues were harvested to produce fuelwood. Conventional harvests caused a decrease in carbon storage in the forest floor, but when the whole soil profile was taken into account, we found that this loss in the forest floor was compensated by an accumulation of SOC in deeper soil layers. Conversely, we found that intensive harvests led to SOC losses in all layers of forest soils. We assessed the potential impact of intensive harvests on the carbon budget, focusing on managed European forests. Estimated carbon losses from forest soils suggested that intensive biomass harvests could constitute an important source of carbon transfer from forests to the atmosphere (142-497 Tg-C), partly neutralizing the role of a carbon sink played by forest soils.

A life-cycle approach to technology, infrastructure, and climate policy decision making: Transitioning to plug-in hybrid electric vehicles and low-carbon electricity

NASA Astrophysics Data System (ADS)

Samaras, Constantine

In order to mitigate the most severe effects of climate change, large global reductions in the current levels of anthropogenic greenhouse gas (GHG) emissions are required in this century to stabilize atmospheric carbon dioxide (CO2) concentrations at less than double pre-industrial levels. The Intergovernmental Panel on Climate Change (IPCC) fourth assessment report states that GHG emissions should be reduced to 50-80% of 2000 levels by 2050 to increase the likelihood of stabilizing atmospheric CO2 concentrations. In order to achieve the large GHG reductions by 2050 recommended by the IPCC, a fundamental shift and evolution will be required in the energy system. Because the electric power and transportation sectors represent the largest GHG emissions sources in the United States, a unique opportunity for coupling these systems via electrified transportation could achieve synergistic environmental (GHG emissions reductions) and energy security (petroleum displacement) benefits. Plug-in hybrid electric vehicles (PHEVs), which use electricity from the grid to power a portion of travel, could play a major role in reducing greenhouse gas emissions from the transport sector. However, this thesis finds that life cycle GHG emissions from PHEVs depend on the electricity source that is used to charge the battery, so meaningful GHG emissions reductions with PHEVs are conditional on low-carbon electricity sources. Power plants and their associated GHGs are long-lived, and this work argues that decisions made regarding new electricity supplies within the next ten years will affect the potential of PHEVs to play a role in a low-carbon future in the coming decades. This thesis investigates the life cycle engineering, economic, and policy decisions involved in transitioning to PHEVs and low-carbon electricity. The government has a vast array of policy options to promote low-carbon technologies, some of which have proven to be more successful than others. This thesis uses life cycle assessment to evaluate options and opportunities for large GHG reductions from plug-in hybrids. After the options and uncertainties are framed, engineering economic analysis is used to evaluate the policy actions required for adoption of PHEVs at scale and the implications for low-carbon electricity investments. A logistic PHEV adoption model is constructed to parameterize implications for low-carbon electricity infrastructure investments and climate policy. This thesis concludes with an examination of what lessons can be learned for climate, innovation, and low-carbon energy policies from the evolution of wind power from an emerging alternative energy technology to a utility-scale power source. Policies to promote PHEVs and other emerging energy technologies can take lessons learned from the successes and challenges of wind power's development to optimize low-carbon energy policy and R&D programs going forward. The need for integrated climate policy, energy policy, sustainability, and urban mobility solutions will accelerate in the next two decades as concerns regarding GHG emissions and petroleum resources continue to be environmental and economic priorities. To assist in informing the discussions on climate policy and low-carbon energy R&D, this research and its methods will provide stakeholders in government and industry with plug-in hybrid and energy policy choices based on life cycle assessment, engineering economics, and systems analysis.

NOVEL ORGANIZATION OF THE GENES FOR PHTHALATE DEGRADATION FROM BURKHOLDERIA CEPACIA DBO1

EPA Science Inventory

Burkholderia cepacia DBO1 is able to utilize phthalate as the sole source of carbon and energy for growth. Two overlapping cosmid clones containing the genes for phthalate degradation were isolated from this strain. Subcloning and activity analysis localized the genes for phthala...

Modelling night-time ecosystem respiration by a constrained source optimization method

Treesearch

Chun-Tai Lai; Gabriel Katul; John Butnor; David Ellsworth; Ram Oren

2002-01-01

One of the main challenges to quantifying ecosystem carbon budgets is properly quantifying the magnitude of night-time ecosystem respiration. Inverse Lagrangian dispersion analysis provides a promising approach to addressing such a problem when measured mean CO2 concentration profiles and nocturnal velocity statistics are available. An inverse...

Microspheres and their methods of preparation

DOEpatents

Bose, Anima B; Yang, Junbing

2015-03-24

Carbon microspheres are doped with boron to enhance the electrical and physical properties of the microspheres. The boron-doped carbon microspheres are formed by a CVD process in which a catalyst, carbon source and boron source are evaporated, heated and deposited onto an inert substrate.

Implications for chloro- and pheopigment synthesis and preservation from combined compound-specific δ13C, δ15N, and Δ14C analysis

NASA Astrophysics Data System (ADS)

Kusch, S.; Kashiyama, Y.; Ogawa, N. O.; Altabet, M.; Butzin, M.; Friedrich, J.; Ohkouchi, N.; Mollenhauer, G.

2010-08-01

Chloropigments and their derivative pheopigments preserved in sediments can directly be linked to photosynthesis. Their carbon and nitrogen stable isotopic compositions have been shown to be a good recorder of recent and past surface ocean environmental conditions tracing the carbon and nitrogen sources and dominant assimilation processes of the phytoplanktonic community. In this study we report results from combined compound-specific radiocarbon and stable carbon and nitrogen isotopic analysis to examine the timescales of synthesis and fate of chlorophyll-a and its degradation products pheophytin-a, pyropheophytin-a, and 132,173-cyclopheophorbide-a-enol until burial in Black Sea surface sediments. The pigments are mainly of marine phytoplanktonic origin as implied by their stable isotopic compositions. Pigment δ15N values indicate nitrate as the major uptake substrate but 15N-depletion towards the open marine setting indicates contribution from N2-fixation. Radiocarbon concentrations translate into minimum and maximum pigment ages of approximately 40 to 1200 years. This implies that protective mechanisms against decomposition such as association with minerals or eutrophication-induced hypoxia and light limitation are much more efficient than previously thought. However, seasonal variations of nutrient source, growth period, and habitat and their associated isotopic variability are likely at least as strong as long-term trends. Combined triple isotopic analysis of sedimentary chlorophyll and its primary derivatives is a powerful tool to delineate biogeochemical and diagenetic processes in the surface water and assess their precise timescales.

Characteristics of dissolved organic matter in the Upper Klamath River, Lost River, and Klamath Straits Drain, Oregon and California

USGS Publications Warehouse

Goldman, Jami H.; Sullivan, Annett B.

2017-12-11

Concentrations of particulate organic carbon (POC) and dissolved organic carbon (DOC), which together comprise total organic carbon, were measured in this reconnaissance study at sampling sites in the Upper Klamath River, Lost River, and Klamath Straits Drain in 2013–16. Optical absorbance and fluorescence properties of dissolved organic matter (DOM), which contains DOC, also were analyzed. Parallel factor analysis was used to decompose the optical fluorescence data into five key components for all samples. Principal component analysis (PCA) was used to investigate differences in DOM source and processing among sites.At all sites in this study, average DOC concentrations were higher than average POC concentrations. The highest DOC concentrations were at sites in the Klamath Straits Drain and at Pump Plant D. Evaluation of optical properties indicated that Klamath Straits Drain DOM had a refractory, terrestrial source, likely extracted from the interaction of this water with wetland peats and irrigated soils. Pump Plant D DOM exhibited more labile characteristics, which could, for instance, indicate contributions from algal or microbial exudates. The samples from Klamath River also had more microbial or algal derived material, as indicated by PCA analysis of the optical properties. Most sites, except Pump Plant D, showed a linear relation between fluorescent dissolved organic matter (fDOM) and DOC concentration, indicating these measurements are highly correlated (R2=0.84), and thus a continuous fDOM probe could be used to estimate DOC loads from these sites.

Elucidating MTBE degradation in a mixed consortium using a multidisciplinary approach.

PubMed

Bastida, Felipe; Rosell, Mònica; Franchini, Alessandro G; Seifert, Jana; Finsterbusch, Stefanie; Jehmlich, Nico; Jechalke, Sven; von Bergen, Martin; Richnow, Hans H

2010-08-01

The structure and function of a microbial community capable of biodegrading methyl-tert-butyl ether (MTBE) was characterized using compound-specific stable isotope analysis (CSIA), clone libraries and stable isotope probing of proteins (Protein-SIP). The enrichment culture (US3-M), which originated from a gasoline-impacted site in the United States, has been enriched on MTBE as the sole carbon source. The slope of isotopic enrichment factors (epsilon(C) of -2.29+/-0.03 per thousand; epsilon(H) of -58+/-6 per thousand) for carbon and hydrogen discrimination (Deltadelta(2)H/Deltadelta(13)C) was on average equal to Lambda=24+/-2, a value closely related to the reaction mechanism of MTBE degradation in Methylibium petroleiphilum PM1. 16S rRNA gene libraries revealed sequences belonging to M. petroleiphilum PM1, Hydrogenophaga sp., Thiothrix unzii, Rhodobacter sp., Nocardiodes sp. and different Sphingomonadaceae bacteria. Protein-SIP analysis of the culture grown on (13)C-MTBE as the only carbon source revealed that proteins related to members of the Comamonadaceae family, such as Delftia acidovorans, Acidovorax sp. or Comamonas sp., were not (13)C-enriched, whereas proteins related to M. petroleiphilum PM1 showed an average incorporation of 94.5 atom%(13)C. These results indicate a key role for this species in the degradation of MTBE within the US3-M consortia. The combination of CSIA, molecular biology and Protein-SIP facilitated the analysis of an MTBE-degrading mixed culture from a functional and phylogenetic point of view.

A connection to deep groundwater alters ecosystem carbon fluxes and budgets: Example from a Costa Rican rainforest

DOE Office of Scientific and Technical Information (OSTI.GOV)

Genereux, David P.; Nagy, Laura A.; Osburn, Christopher L.

Field studies of watershed carbon fluxes and budgets are critical for understanding the carbon cycle, but the role of deep regional groundwater is poorly known and field examples are lacking. Here we show that discharge of regional groundwater into a lowland Costa Rican rainforest has a major influence on ecosystem carbon fluxes. Furthermore, this influence is observable through chemical, isotopic, and flux signals in groundwater, surface water, and air. Not addressing the influence of regional groundwater in the field measurement program and data analysis would give a misleading impression of the overall carbon source or sink status of the rainforest.more » In quantifying a carbon budget with the traditional "small watershed" mass-balance approach, it would be critical at this site and likely many others to consider watershed inputs or losses associated with exchange between the ecosystem and the deeper hydrogeological system on which it sits.« less

A connection to deep groundwater alters ecosystem carbon fluxes and budgets: Example from a Costa Rican rainforest

DOE PAGES

Genereux, David P.; Nagy, Laura A.; Osburn, Christopher L.; ...

2013-05-28

Field studies of watershed carbon fluxes and budgets are critical for understanding the carbon cycle, but the role of deep regional groundwater is poorly known and field examples are lacking. Here we show that discharge of regional groundwater into a lowland Costa Rican rainforest has a major influence on ecosystem carbon fluxes. Furthermore, this influence is observable through chemical, isotopic, and flux signals in groundwater, surface water, and air. Not addressing the influence of regional groundwater in the field measurement program and data analysis would give a misleading impression of the overall carbon source or sink status of the rainforest.more » In quantifying a carbon budget with the traditional "small watershed" mass-balance approach, it would be critical at this site and likely many others to consider watershed inputs or losses associated with exchange between the ecosystem and the deeper hydrogeological system on which it sits.« less

Spatial/Temporal Variations of Elemental Carbon, Organic Carbon, and Trace Elements in PM10 and the Impact of Land-Use Patterns on Community Air Pollution in Paterson, NJ

PubMed Central

Yu, Chang Ho; Fan, Zhi-Hua; Meng, Qingyu; Zhu, Xianlei; Korn, Leo; Bonanno, Linda J.

2014-01-01

An urban community PM10 (particulate matter ≤ 10 μm in aerodynamic diameter) air pollution study was conducted in Paterson, NJ, a mixed land-use community that is interspersed with industrial, commercial, mobile, and residential land-use types. This paper examines (1) the spatial/temporal variation of PM10, elemental carbon (EC), organic carbon (OC), and nine elements; and (2) the impact of land-use type on those variations. Air samples were collected from three community-oriented locations in Paterson that attempted to capture industrial, commercial, and mobile source-dominated emissions. Sampling was conducted for 24 hr every 6 days from November 2005 through December 2006. Samples were concurrently collected at the New Jersey Department of Environmental Protection-designated air toxics background site in Chester, NJ. PM10 mass, EC, OC, and nine elements (Ca, Cu, Fe, Pb, Mn, Ni, S, Ti, and Zn) that had more than 50% of samples above detection and known sources or are toxic were selected for spatial/temporal analysis in this study. The concentrations of PM10, EC, OC, and eight elements (except S) were significantly higher in Paterson than in Chester (P < 0.05). The concentrations of these elements measured in Paterson were also found to be higher during winter than the other three seasons (except S), and higher on weekdays than on weekends (except Pb). The concentrations of EC, Cu, Fe, and Zn at the commercial site in Paterson were significantly higher than the industrial and mobile sites; however, the other eight species were not significantly different within the city (P > 0.05). These results indicated that anthropogenic sources of air pollution were present in Paterson. The source apportionment confirmed the impact of vehicular and industrial emissions on the PM10 ambient air pollution in Paterson. The multiple linear regression analysis showed that categorical land-use type was a significant predictor for all air pollution levels, explaining up to 42% of the variability in concentration by land-use type only. PMID:21751583

The conservative behavior of dissolved organic carbon in surface waters of the southern Chukchi Sea, Arctic Ocean, during early summer

PubMed Central

Tanaka, Kazuki; Takesue, Nobuyuki; Nishioka, Jun; Kondo, Yoshiko; Ooki, Atsushi; Kuma, Kenshi; Hirawake, Toru; Yamashita, Youhei

2016-01-01

The spatial distribution of dissolved organic carbon (DOC) concentrations and the optical properties of dissolved organic matter (DOM) determined by ultraviolet-visible absorbance and fluorescence spectroscopy were measured in surface waters of the southern Chukchi Sea, western Arctic Ocean, during the early summer of 2013. Neither the DOC concentration nor the optical parameters of the DOM correlated with salinity. Principal component analysis using the DOM optical parameters clearly separated the DOM sources. A significant linear relationship was evident between the DOC and the principal component score for specific water masses, indicating that a high DOC level was related to a terrigenous source, whereas a low DOC level was related to a marine source. Relationships between the DOC and the principal component scores of the surface waters of the southern Chukchi Sea implied that the major factor controlling the distribution of DOC concentrations was the mixing of plural water masses rather than local production and degradation. PMID:27658444

Distribution, richness, quality, and thermal maturity of source rock units on the North Slope of Alaska

USGS Publications Warehouse

Peters, K.E.; Bird, K.J.; Keller, M.A.; Lillis, P.G.; Magoon, L.B.

2003-01-01

Four source rock units on the North Slope were identified, characterized, and mapped to better understand the origin of petroleum in the area: Hue-gamma ray zone (Hue-GRZ), pebble shale unit, Kingak Shale, and Shublik Formation. Rock-Eval pyrolysis, total organic carbon analysis, and well logs were used to map the present-day thickness, organic quantity (TOC), quality (hydrogen index, HI), and thermal maturity (Tmax) of each unit. To map these units, we screened all available geochemical data for wells in the study area and assumed that the top and bottom of the oil window occur at Tmax of ~440° and 470°C, respectively. Based on several assumptions related to carbon mass balance and regional distributions of TOC, the present-day source rock quantity and quality maps were used to determine the extent of fractional conversion of the kerogen to petroleum and to map the original organic richness prior to thermal maturation.

Sources and formation mechanisms of carbonaceous aerosol at a regional background site in the Netherlands: insights from a year-long radiocarbon study

NASA Astrophysics Data System (ADS)

Dusek, Ulrike; Hitzenberger, Regina; Kasper-Giebl, Anne; Kistler, Magdalena; Meijer, Harro A. J.; Szidat, Sönke; Wacker, Lukas; Holzinger, Rupert; Röckmann, Thomas

2017-03-01

We measured the radioactive carbon isotope 14C (radiocarbon) in various fractions of the carbonaceous aerosol sampled between February 2011 and March 2012 at the Cesar Observatory in the Netherlands. Based on the radiocarbon content in total carbon (TC), organic carbon (OC), water-insoluble organic carbon (WIOC), and elemental carbon (EC), we estimated the contribution of major sources to the carbonaceous aerosol. The main source categories were fossil fuel combustion, biomass burning, and other contemporary carbon, which is mainly biogenic secondary organic aerosol material (SOA). A clear seasonal variation is seen in EC from biomass burning (ECbb), with lowest values in summer and highest values in winter, but ECbb is a minor fraction of EC in all seasons. WIOC from contemporary sources is highly correlated with ECbb, indicating that biomass burning is a dominant source of contemporary WIOC. This suggests that most biogenic SOA is water soluble and that water-insoluble carbon stems mainly from primary sources. Seasonal variations in other carbon fractions are less clear and hardly distinguishable from variations related to air mass history. Air masses originating from the ocean sector presumably contain little carbonaceous aerosol from outside the Netherlands, and during these conditions measured carbon concentrations reflect regional sources. In these situations absolute TC concentrations are usually rather low, around 1.5 µg m-3, and ECbb is always very low ( ˜ 0.05 µg m-3), even in winter, indicating that biomass burning is not a strong source of carbonaceous aerosol in the Netherlands. In continental air masses, which usually arrive from the east or south and have spent several days over land, TC concentrations are on average by a factor of 3.5 higher. ECbb increases more strongly than TC to 0.2 µg m-3. Fossil EC and fossil WIOC, which are indicative of primary emissions, show a more moderate increase by a factor of 2.5 on average. An interesting case is fossil water-soluble organic carbon (WSOC, calculated as OC-WIOC), which can be regarded as a proxy for SOA from fossil precursors. Fossil WSOC has low concentrations when regional sources are sampled and increases by more than a factor of 5 in continental air masses. A longer residence time of air masses over land seems to result in increased SOA concentrations from fossil origin.

Compound specific radiocarbon analyses to apportion sources of combustion products in sedimentary pyrogenic carbon deposits

NASA Astrophysics Data System (ADS)

Hanke, Ulrich M.; Schmidt, Michael W. I.; McIntyre, Cameron P.; Reddy, Christopher M.; Wacker, Lukas; Eglinton, Timothy I.

2016-04-01

Pyrogenic carbon (PyC) is a collective term for carbon-rich residues comprised of a continuum of products generated during biomass burning and fossil fuel combustion. PyC is a key component of the global carbon cycle due to its slow intrinsic decomposition rate and its ubiquity in the environment. It can originate from natural or anthropogenic vegetation fires, coal mining, energy production, industry and transport. Subsequently, PyC can be transported over long distances by wind and water and can eventually be buried in sediments. Information about the origin of PyC (biomass burning vs. fossil fuel combustion) deposited in estuarine sediments is scarce. We studied the highly anoxic estuarine sediments of the Pettaquamscutt River (Rhode Island, U.S.) in high temporal resolution over 250 years and found different combustion proxies reflect local and regional sources of PyC (Hanke et al. in review; Lima et al. 2003). The polycyclic aromatic hydrocarbons (PAH) originate from long-range atmospheric transport, whereas bulk PyC, detected as benzene polycarboxylic acids (BPCA), mainly stems from local catchment run-off. However, to unambiguously apportion PyC sources, we need additional information, such as compound specific radiocarbon (14C) measurements. We report 14C data for individual BPCA including error analysis and for combustion-related PAH. First results indicate that biomass burning is the main source of PyC deposits, with additional minor contributions from fossil fuel combustion. References Hanke U.M., T.I. Eglinton, A.L.L. Braun, C. Reddy, D.B. Wiedemeier, M.W.I. Schmidt. Decoupled sedimentary records of combustion: causes and implications. In review. Lima, A. L.; Eglinton, T. I.; Reddy, C. M., High-resolution record of pyrogenic polycyclic aromatic hydrocarbon deposition during the 20th century. ES&T, 2003, 37 (1), 53-61.

Sulfurospirillum arcachonense sp. nov., a new microaerophilic sulfur-reducing bacterium.

PubMed

Finster, K; Liesack, W; Tindall, B J

1997-10-01

The isolation of a new motile, gram-negative, heterotrophic, sulfur-reducing, microaerophilic, vibrioid bacterium, strain F1F6, from oxidized marine surface sediment (Arcachon Bay, French Atlantic coast) is described. Hydrogen (with acetate as the carbon source), formate (with acetate as the carbon source), pyruvate, lactate, alpha-ketoglutarate, glutarate, glutamate, and yeast extract supported growth with elemental sulfur under anaerobic conditions. Apart from H2 and formate, the oxidation of the substrates was incomplete. Microaerophilic growth was supported with hydrogen (acetate as the carbon source), formate (acetate as the carbon source), acetate, propionate, pyruvate, lactate, alpha-ketoglutarate, glutamate, yeast extract, fumarate, succinate, malate, citrate, and alanine. The isolate grew fermentatively with fumarate, succinate being the only organic product. Elemental sulfur and oxygen were the only electron acceptors used. Vitamins or amino acids were not required. The isolate was oxidase, catalase, and urease positive. Comparative 16S rDNA sequence analysis revealed a tight cluster consisting of the validly described species Sulfurospirillum deleyianum and the strains SES-3 and CCUG 13942 as the closest relatives of strain F1F6 (level of sequence similarity, 91.7 to 92.4%). Together with strain F1F6, these organisms form a novel lineage within the epsilon subclass of proteobacteria clearly separated from the described species of the genera Arcobacter, Campylobacter, Wolinella, and Helicobacter. Due to the phenotypic characteristics shared by strain F1F6 and S. deleyianum and considering their phylogenetic relationship, we propose the inclusion of strain F1F6 in the genus Sulfurospirillum, namely, as S. arcachonense sp. nov. Based on the results of this study, an emended description of the genus Sulfurospirillum is given.

Time-Series Similarity Analysis of Satellite Derived Data to Understand Changes in Forest Biomass.

NASA Astrophysics Data System (ADS)

Singh, N.; Fritz, B.

2017-12-01

One of the goals of promoting bioenergy is reducing green-house gas emissions by replacing fossil fuels. However, there are concerns that carbon emissions due to changes in land use resulting from crop production for ethanol will negate the impact of biofuels on the environment. So, the current focus is to use lignocellulose feedstocks also referred to as second generation biofuels as the new source of bioenergy. Wood based pellets derived from the forests of southeastern United States are one such source which is being exported to Europe as a carbon-neutral fuel. These wood-pellets meet the EU standard for carbon emissions and are being used to replace coal for energy generation and heating. As a result US exports of wood-based pellets have increased from nearly zero to over 6 million metric tons over the past 8 years. Wood-based pellets are traditionally produced from softwood trees which have a relatively shorter life-cycle and propagate easily, and thus are expected to provide a sustainable source of wood chips used for pellet production. However, there are concerns that as the demand and price of wood pellets increases, lumber mills will seek wood chips from other sources as well, particularly from hardwood trees resulting in higher carbon emissions as well as loss of biodiversity. In this study we use annual stacks of normalized difference vegetation index (NDVI) data at a 16-day temporal resolution to monitor biomass around pellet mills in southeastern United States. We use a combination of time series similarity technique and supervised learning to understand if there have been significant changes in biomass around pellet mills in the southeastern US. We also demonstrate how our method can be used to monitor biomass over large geographic regions using phenological properties of growing vegetation.

The extraction of negative carbon ions from a volume cusp ion source

NASA Astrophysics Data System (ADS)

Melanson, Stephane; Dehnel, Morgan; Potkins, Dave; McDonald, Hamish; Hollinger, Craig; Theroux, Joseph; Martin, Jeff; Stewart, Thomas; Jackle, Philip; Philpott, Chris; Jones, Tobin; Kalvas, Taneli; Tarvainen, Olli

2017-08-01

Acetylene and carbon dioxide gases are used in a filament-powered volume-cusp ion source to produce negative carbon ions for the purpose of carbon implantation for gettering applications. The beam was extracted to an energy of 25 keV and the composition was analyzed with a spectrometer system consisting of a 90° dipole magnet and a pair of slits. It is found that acetylene produces mostly C2- ions (up to 92 µA), while carbon dioxide produces mostly O- with only trace amounts of C-. Maximum C2- current was achieved with 400 W of arc power and, the beam current and composition were found to be highly dependent on the pressure in the source. The beam properties as a function of source settings are analyzed, and plasma properties are measured with a Langmuir probe. Finally, we describe testing of a new RF H- ion source, found to produce more than 6 mA of CW H- beam.

Controls on the Origin and Cycling of Riverine Dissolved Inorganic Carbon in the Brazos River, Texas

NASA Astrophysics Data System (ADS)

Zeng, F.; Masiello, C. A.; Hockaday, W. C.

2008-12-01

Rivers are generally supersaturated in CO2 with respect to the atmosphere. However, there is little agreement on the sources and turnover times of excess CO2 in river waters. This is likely due to varying dominant controls on carbon sources (e.g. geologic setting, climate, land use, or human activities). In this study, we measured carbon isotopic signatures (δ13C and Δ14C) of riverine dissolved inorganic carbon (DIC), as well as solid state cross polarization/magic angle spinning (CP/MAS) 13C nuclear magnetic resonance (NMR) of particulate organic carbon (POC), to determine carbon sources fuelling respiration of the Brazos River in Texas. We found that sources of riverine CO2 varied significantly along the length of the Brazos. In the middle Brazos (between Graham and Waco), which is partially underlain by limestone, riverine DIC had average Δ14C of 74 ‰ and δ13C of -7.5 ‰, suggesting that riverine CO2 is derived almost entirely from contemporary carbon (less than 5 years old) with little evidence of carbonate input, probably due to the damming upstream of Waco. In the lower Brazos (downstream of Bryan), riverine DIC was highly depleted in 14C (average Δ14C = -148.5 ‰) and enriched in 13C (average δ13C= -9.32 ‰), indicative of the presence of old carbonate. Since there is no carbonate bedrock in contact with the river in this area, the most likely source of old carbonate is the shell used in road and building construction throughout the 19th century. Our results suggest that the effect of human activities superimposes and even surpasses the effect of natural controls (e.g. geologic setting and climate) on C cycling in the Brazos.

Apportionment of urban aerosol sources in Cork (Ireland) by synergistic measurement techniques.

PubMed

Dall'Osto, Manuel; Hellebust, Stig; Healy, Robert M; O'Connor, Ian P; Kourtchev, Ivan; Sodeau, John R; Ovadnevaite, Jurgita; Ceburnis, Darius; O'Dowd, Colin D; Wenger, John C

2014-09-15

The sources of ambient fine particulate matter (PM2.5) during wintertime at a background urban location in Cork city (Ireland) have been determined. Aerosol chemical analyses were performed by multiple techniques including on-line high resolution aerosol time-of-flight mass spectrometry (Aerodyne HR-ToF-AMS), on-line single particle aerosol time-of-flight mass spectrometry (TSI ATOFMS), on-line elemental carbon-organic carbon analysis (Sunset_EC-OC), and off-line gas chromatography/mass spectrometry and ion chromatography analysis of filter samples collected at 6-h resolution. Positive matrix factorization (PMF) has been carried out to better elucidate aerosol sources not clearly identified when analyzing results from individual aerosol techniques on their own. Two datasets have been considered: on-line measurements averaged over 2-h periods, and both on-line and off-line measurements averaged over 6-h periods. Five aerosol sources were identified by PMF in both datasets, with excellent agreement between the two solutions: (1) regional domestic solid fuel burning--"DSF_Regional," 24-27%; (2) local urban domestic solid fuel burning--"DSF_Urban," 22-23%; (3) road vehicle emissions--"Traffic," 15-20%; (4) secondary aerosols from regional anthropogenic sources--"SA_Regional" 9-13%; and (5) secondary aged/processed aerosols related to urban anthropogenic sources--"SA_Urban," 21-26%. The results indicate that, despite regulations for restricting the use of smoky fuels, solid fuel burning is the major source (46-50%) of PM2.5 in wintertime in Cork, and also likely other areas of Ireland. Whilst wood combustion is strongly associated with OC and EC, it was found that peat and coal combustion is linked mainly with OC and the aerosol from these latter sources appears to be more volatile than that produced by wood combustion. Ship emissions from the nearby port were found to be mixed with the SA_Regional factor. The PMF analysis allowed us to link the AMS cooking organic aerosol factor (AMS_PMF_COA) to oxidized organic aerosol, chloride and locally produced nitrate, indicating that AMS_PMF_COA cannot be attributed to primary cooking emissions only. Overall, there are clear benefits from factor analysis applied to results obtained from multiple techniques, which allows better association of aerosols with sources and atmospheric processes. Copyright © 2014 Elsevier B.V. All rights reserved.

Utilisation of Carbon Sources by Pythium, Phytophthora and Fusarium Species as Determined by Biolog® Microplate Assay

PubMed Central

Khalil, Sammar; Alsanius, Beatrix W

2009-01-01

This study examined the metabolic activity of pure cultures of five root pathogens commonly found in closed hydroponic cultivation systems (Phytophthora cryptogea (PC), Phytophthora capsici (PCP), Pythium aphanidermatum (PA), Fusarium oxysporum f.sp. radicis-lycopersici (FORL) and Fusarium solani (FS)) using sole carbon source utilisation in order to develop effective biocontrol strategies against these pathogens. Aliquots of 150 µL of the mycelial suspension were inoculated in each well of GN2 microtitre plates. On the basis of average well colour development and number of positive wells, the pathogens were divided into two groups, (i) PA and FORL and (ii) PC, PCP and FS. Group (i) was characterised by a short lag-phase, a rapid exponential phase involving almost all carbon sources offered and a long stationary phase, while group (ii) had a more extended lag-phase and a slower utilisation rate of the carbon sources offered. The three isolates in group (ii) differed significantly during their exponential phase. The lowest utilisation rate of carbon sources and number of sources utilised was found for PCP. Of the major group of carbon sources, six carbohydrates, three carboxylic acids and four amino acids were rapidly used by all isolates tested at an early stage. The carbon sources gentibiose, α-D-glucose, maltose, sucrose, D-trehalose, L-aspartic acid, L-glutamic acid, L-proline persisted to the end of the exponential phase.Moreover, similarities between the metabolic profiles of the tested pathogen and the those of the resident microflora could also be found. These findings are of great importance as regards the role of the resident microflora in the biocontrol. PMID:19294012

Factors shaping bacterial phylogenetic and functional diversity in coastal waters of the NW Mediterranean Sea

NASA Astrophysics Data System (ADS)

Boras, Julia A.; Vaqué, Dolors; Maynou, Francesc; Sà, Elisabet L.; Weinbauer, Markus G.; Sala, Maria Montserrat

2015-03-01

To evaluate the main factors shaping bacterioplankton phylogenetic and functional diversity in marine coastal waters, we carried out a two-year study based on a monthly sampling in Blanes Bay (NW Mediterranean). We expected the key factors driving bacterial diversity to be (1) temperature and nutrient concentration, together with chlorophyll a concentration as an indicator of phytoplankton biomass and, hence, a carbon source for bacteria (here called bottom-up factors), and (2) top-down pressure (virus- and protist-mediated mortality of bacteria). Phylogenetic diversity was analyzed by denaturing gradient gel electrophoresis (DGGE) of 16S rRNA. Functional diversity was assessed by using monomeric carbon sources in Biolog EcoPlates and by determining the activity of six extracellular enzymes. Our results indicate that the bacterial phylogenetic and functional diversity in this coastal system is shaped mainly by bottom-up factors. A dendrogram analysis of the DGGE banding patterns revealed three main sample clusters. Two clusters differed significantly in temperature, nitrate and chlorophyll a concentration, and the third was characterized by the highest losses of bacterial production due to viral lysis detected over the whole study period. Protistan grazing had no effect on bacterial functional diversity, since there were no correlations between protist-mediated mortality (PMM) and extracellular enzyme activities, and utilization of only two out of the 31 carbon sources (N-acetyl-D-glucosamine and α-cyclodextrin) was correlated with PMM. In contrast, virus-mediated mortality correlated with changes in the percentage of use of four carbon sources, and also with specific leu-aminopeptidase and β-glucosidase activity. This suggests that viral lysate provides a pool of labile carbon sources, presumably including amino acids and glucose, which may inhibit proteolytic and glucosidic activity. Our results indicate that bottom-up factors play a more important role than top-down factors (i.e. viral lysis and protistan grazing) in shaping bacterial community structure and activity. Furthermore, they suggest that viruses play a more important role than protists in modifying community structure and functional diversity of bacteria in oligotrophic marine coastal waters.

Metabolic flux profiling of recombinant protein secreting Pichia pastoris growing on glucose:methanol mixtures

PubMed Central

2012-01-01

Background The methylotrophic yeast Pichia pastoris has emerged as one of the most promising yeast hosts for the production of heterologous proteins. Mixed feeds of methanol and a multicarbon source instead of methanol as sole carbon source have been shown to improve product productivities and alleviate metabolic burden derived from protein production. Nevertheless, systematic quantitative studies on the relationships between the central metabolism and recombinant protein production in P. pastoris are still rather limited, particularly when growing this yeast on mixed carbon sources, thus hampering future metabolic network engineering strategies for improved protein production. Results The metabolic flux distribution in the central metabolism of P. pastoris growing on a mixed feed of glucose and methanol was analyzed by Metabolic Flux Analysis (MFA) using 13C-NMR-derived constraints. For this purpose, we defined new flux ratios for methanol assimilation pathways in P. pastoris cells growing on glucose:methanol mixtures. By using this experimental approach, the metabolic burden caused by the overexpression and secretion of a Rhizopus oryzae lipase (Rol) in P. pastoris was further analyzed. This protein has been previously shown to trigger the unfolded protein response in P. pastoris. A series of 13C-tracer experiments were performed on aerobic chemostat cultivations with a control and two different Rol producing strains growing at a dilution rate of 0.09 h−1 using a glucose:methanol 80:20 (w/w) mix as carbon source. The MFA performed in this study reveals a significant redistristribution of carbon fluxes in the central carbon metabolism when comparing the two recombinant strains vs the control strain, reflected in increased glycolytic, TCA cycle and NADH regeneration fluxes, as well as higher methanol dissimilation rates. Conclusions Overall, a further 13C-based MFA development to characterise the central metabolism of methylotrophic yeasts when growing on mixed methanol:multicarbon sources has been implemented, thus providing a new tool for the investigation of the relationships between central metabolism and protein production. Specifically, the study points at a limited but significant impact of the conformational stress associated to secretion of recombinant proteins on the central metabolism, occurring even at modest production levels. PMID:22569166

The Impacts of Episodic Storm and Flood Events on Carbon and Sediment Delivery to Gulf of Mexico Sediments

NASA Astrophysics Data System (ADS)

Schreiner, K. M.; Carlin, J. A.; Sayers, L.; Swenson, J.

2017-12-01

Marine sediments are an important long-term reservoir for both recently fixed organic carbon (OC) and ancient rock derived OC, much of which is delivered by rivers. The ratio between these two sources of OC in turn regulates atmospheric levels of oxygen and carbon dioxide over geologic time, making this riverine delivery of OC, primarily carried by sediments, an important flux in the global carbon cycle. However, while the overall magnitude of these fluxes are relatively well known, it remains to be determined the importance of episodic events, like storms and floods, in the flux of OC from terrestrial to marine environments. Here, we present data from a 34 cm core collected from the Gulf of Mexico at a mid-shelf distal depocenter for the Brazos River in 2015, during a strong El Nino when that area of the country was experiencing 100-year flood events and anomalously high river flow. Based on analysis of the radioactive isotope 7Be, approximately the top 7-8 cm of the sediment in this core was deposited during this flood event. Both bulk elemental (C, N, and stable carbon isotopes) and chemical biomarker (lignin-phenol) data has been combined to provide information of the origin and chemistry of the OC in this core both before and during flooding. C:N and d13C indicate a mixture of marine-sourced and terrestrially-sourced OC throughout the length of the core with very little variation between the flood layer and deeper sediments. However, lignin-phenol concentrations are higher in flood-deposited sediment, indicating that this sediment is likely terrestrially-sourced. Lignin-phenol indicators of OC degradation state (Acid:Aldehyde ratios) indicate that flood sediment is fresher and less degraded than deeper sediments. Taken together, these results indicate that 1. Bulk analyses are not enough to determine OC source and the importance of flood events in OC cycling and 2. Episodic events like floods could have an oversized impact on OC storage in marine sediments.

Effect of carbon source on the morphology and electrochemical performances of LiFePO4/C nanocomposites.

PubMed

Liu, Shuxin; Wang, Haibin; Yin, Hengbo; Wang, Hong; He, Jichuan

2014-03-01

The carbon coated LiFePO4 (LiFePO4/C) nanocomposites materials were successfully synthesized by sol-gel method. The microstructure and morphology of LiFePO4/C nanocomposites were characterized by X-ray diffraction, Raman spectroscopy and scanning electron microscopy. The results showed that the carbon layers decomposed by different dispersant and carbon source had different graphitization degree, and the sugar could decompose to form more graphite-like structure carbon. The carbon source and heat-treatment temperature had some effect on the particle size and morphology, the sample LFP-S700 synthesized by adding sugar as carbon source at 700 degrees C had smaller particle size, uniform size distribution and spherical shape. The electrochemical behavior of LiFePO4/C nanocomposites was analyzed using galvanostatic measurements and cyclic voltammetry (CV). The results showed that the sample LFP-S700 had higher discharge specific capacities, higher apparent lithium ion diffusion coefficient and lower charge transfer resistance. The excellent electrochemical performance of sample LFP-S700 could be attributed to its high graphitization degree of carbon, smaller particle size and uniform size distribution.

Characterization of bacteria isolated from palaeoproterozoic metasediments for sequestration of carbon dioxide and formation of calcium carbonate.

PubMed

Srivastava, Shaili; Bharti, Randhir K; Thakur, Indu Shekhar

2015-01-01

Bacterial community of palaeoproterozoic metasediments was enriched in the chemostat in the presence of different concentrations of NaHCO3. Six bacterial isolates were isolated from the chemostat on nutrient agar plates on the basis of distinct morphology. Denaturing gradient gel electrophoresis (DGGE) proved the presence of six operational taxonomic units (OTUs) at 50 and 100 mM NaHCO3. The OTU was reduced to three and one at enrichment concentration of 150 and 200 mM NaHCO3 respectively. These six isolates were tested for sequestration of carbon dioxide by (14)C metabolic labeling of NaH(14)CO3. Among the six isolates, one of the bacterium showed better potency to fix radiolabeled NaH(14)CO3. The isolate (ISTD04) was identified as Serratia sp. by 16S ribosomal RNA (16S rRNA) sequence analysis and was found to be same as the DGGE OTU sequence at 200-mM NaHCO3 concentration. The bacterium was tested for product formation in form of calcite crystals in presence of 5 % CO2. Scanning electron microscopy (SEM) of product formed by the bacterium revealed defined faceted rhombohedral structure which resembled calcite and vaterite phases of the crystal. Formation of calcium carbonate crystals was further confirmed by Fourier transform infrared (FTIR) spectroscopy as carbonate group showing strong vibration at 1,456 cm(-1). Major calcite phase diffraction peaks were determined by X-ray diffraction (XRD) analysis, and energy-dispersive X-ray (EDX) analysis showed the presence of CaO (72 %) and carbon (18 %). Bacterium use bicarbonate as carbon source for their growth as well as by-product formation in form of calcite shows carbon circulation and storage.

Quantifying Contemporary Terrestrial Carbon Sources and Sinks in the Conterminous United States

NASA Astrophysics Data System (ADS)

Liu, S.; Loveland, T.

2003-12-01

U.S. land likely accounts for a significant portion of the unidentified global carbon sink, although the magnitude is highly uncertain. The ultimate goal of this study is to quantify the contemporary temporal and spatial patterns of carbon sources and sinks in the conterminous United States from the early 1970s to 2000, and to explain the mechanisms that cause the variability and changes. Because of the difficulty and massive cost for developing land cover change databases for the conterminous United States, we adopt an ecoregion-based sampling approach. Carbon dynamics within thousands of 20 km by 20 km or 10 km by 10 km sampling blocks, stratified by Omernik Level III ecoregions, are simulated using the General Ensemble Biogeochemical Modeling System at the spatial resolution of 60 m by 60 m. The land use change data, providing unprecedented accuracy and consistency, are derived from Landsat imagery for five time points (nominally 1972, 1980, 1986, 1992, and 2000). Mechanisms have been implemented to assimilate data from key national benchmark databases (including the USDA Forest Service­_s Forest Inventory and Analysis data and the USDA­_s agricultural census data). The dynamics of carbon stocks in vegetation, soil, and harvested wood materials are quantified. Results from three ecoregions (i.e., Southeastern Plains, Piedmont, and Northern Piedmont) indicated that the carbon sink strength has been decreasing from the 1970s to 2000. The relative contribution of biomass accumulation to the sink decreased during this period, while those of soil organic carbon and harvested wood materials increased.

Tracing Carbon Flow from Primary Production to a Gulf Coast Salt Marsh Consumer, the Seaside Sparrow (Ammodramus maritimus)

NASA Astrophysics Data System (ADS)

Johnson, J. J.; Polito, M. J.; Olin, J.

2016-02-01

Determining the relative contributions of primary producers to salt marsh food webs is fundamental to understanding how these systems are structured. Biomarkers such as bulk carbon isotopes (13C/12C) and fatty acids have become popular tracers of trophic dynamics, based on the principle that the composition of biomarkers in consumer tissues is a reflection of the composition of these same biomarkers in a consumer's diet. However, the use of bulk stable isotope and fatty acid analyses to assess carbon flow in food webs is often hampered by confounding factors such as isotopic fractionation and fatty acid modifications that can occur between trophic levels. In contrast, compound-specific stable isotope analysis of amino acids may offer a more precise tracking of carbon flow through complex food webs. This is because the isotopic values of essential amino acids in consumer tissues are assimilated largely unchanged from their primary sources at the base of the food web. The aim of this study was to test the consistency of three different methods (bulk carbon stable isotope, fatty acid and compound-specific stable isotope analyses) while examining the carbon source pool underlying the diet of a common marsh consumer, the seaside sparrow (A. maritimus). This comparison allows us to gain a better idea of the relative merits of these analytical methods and contribute to a clearer model of overall trophic dynamics in a salt marsh food web.

40 CFR Table 3 to Subpart Kkkk of... - Emission Limits for Affected Sources Using the Control Efficiency/Outlet Concentration Compliance...

Code of Federal Regulations, 2011 CFR

2011-07-01

... affected source a. reduce emissions of total HAP, measured as THC (as carbon), a by 97 percent; orb. limit emissions of total HAP, measured as THC (as carbon), a to 20 ppmvd at the control device outlet and use a PTE. 2. in an existing affected source a. reduce emissions of total HAP, measured as THC (as carbon...

40 CFR Table 3 to Subpart Kkkk of... - Emission Limits for Affected Sources Using the Control Efficiency/Outlet Concentration Compliance...

Code of Federal Regulations, 2010 CFR

2010-07-01

... affected source a. reduce emissions of total HAP, measured as THC (as carbon), a by 97 percent; orb. limit emissions of total HAP, measured as THC (as carbon), a to 20 ppmvd at the control device outlet and use a PTE. 2. in an existing affected source a. reduce emissions of total HAP, measured as THC (as carbon...

Cultured fungal associates from the deep-sea coral Lophelia pertusa

NASA Astrophysics Data System (ADS)

Galkiewicz, Julia P.; Stellick, Sarah H.; Gray, Michael A.; Kellogg, Christina A.

2012-09-01

The cold-water coral Lophelia pertusa provides important habitat to many deep-sea fishes and invertebrates. Studies of the microbial taxa associated with L. pertusa thus far have focused on bacteria, neglecting the microeukaryotic members. This is the first study to culture fungi from living L. pertusa and to investigate carbon source utilization by the fungal associates. Twenty-seven fungal isolates from seven families, including both filamentous and yeast morphotypes, were cultured from healthy L. pertusa colonies collected from the northern Gulf of Mexico, the West Florida Slope, and the western Atlantic Ocean off the Florida coast. Isolates from different sites were phylogenetically closely related, indicating these genera are widely distributed in association with L. pertusa. Biolog™ Filamentous Fungi microtiter plates were employed to determine the functional capacity of a subset of isolates to grow on varied carbon sources. While four of the isolates exhibited no growth on any provided carbon source, the rest (n=10) grew on 8.3-66.7% of carbon sources available. Carbohydrates, carboxylic acids, and amino acids were the most commonly metabolized carbon sources, with overlap between the carbon sources used and amino acids found in L. pertusa mucus. This study represents the first attempt to characterize a microeukaryotic group associated with L. pertusa. However, the functional role of fungi within the coral holobiont remains unclear.

Pichia pastoris regulates its gene-specific response to different carbon sources at the transcriptional, rather than the translational, level.

PubMed

Prielhofer, Roland; Cartwright, Stephanie P; Graf, Alexandra B; Valli, Minoska; Bill, Roslyn M; Mattanovich, Diethard; Gasser, Brigitte

2015-03-11

The methylotrophic, Crabtree-negative yeast Pichia pastoris is widely used as a heterologous protein production host. Strong inducible promoters derived from methanol utilization genes or constitutive glycolytic promoters are typically used to drive gene expression. Notably, genes involved in methanol utilization are not only repressed by the presence of glucose, but also by glycerol. This unusual regulatory behavior prompted us to study the regulation of carbon substrate utilization in different bioprocess conditions on a genome wide scale. We performed microarray analysis on the total mRNA population as well as mRNA that had been fractionated according to ribosome occupancy. Translationally quiescent mRNAs were defined as being associated with single ribosomes (monosomes) and highly-translated mRNAs with multiple ribosomes (polysomes). We found that despite their lower growth rates, global translation was most active in methanol-grown P. pastoris cells, followed by excess glycerol- or glucose-grown cells. Transcript-specific translational responses were found to be minimal, while extensive transcriptional regulation was observed for cells grown on different carbon sources. Due to their respiratory metabolism, cells grown in excess glucose or glycerol had very similar expression profiles. Genes subject to glucose repression were mainly involved in the metabolism of alternative carbon sources including the control of glycerol uptake and metabolism. Peroxisomal and methanol utilization genes were confirmed to be subject to carbon substrate repression in excess glucose or glycerol, but were found to be strongly de-repressed in limiting glucose-conditions (as are often applied in fed batch cultivations) in addition to induction by methanol. P. pastoris cells grown in excess glycerol or glucose have similar transcript profiles in contrast to S. cerevisiae cells, in which the transcriptional response to these carbon sources is very different. The main response to different growth conditions in P. pastoris is transcriptional; translational regulation was not transcript-specific. The high proportion of mRNAs associated with polysomes in methanol-grown cells is a major finding of this study; it reveals that high productivity during methanol induction is directly linked to the growth condition and not only to promoter strength.

Measurement of Vibrated Bulk Density of Coke Particle Blends Using Image Texture Analysis

NASA Astrophysics Data System (ADS)

Azari, Kamran; Bogoya-Forero, Wilinthon; Duchesne, Carl; Tessier, Jayson

2017-09-01

A rapid and nondestructive machine vision sensor was developed for predicting the vibrated bulk density (VBD) of petroleum coke particles based on image texture analysis. It could be used for making corrective adjustments to a paste plant operation to reduce green anode variability (e.g., changes in binder demand). Wavelet texture analysis (WTA) and gray level co-occurrence matrix (GLCM) algorithms were used jointly for extracting the surface textural features of coke aggregates from images. These were correlated with the VBD using partial least-squares (PLS) regression. Coke samples of several sizes and from different sources were used to test the sensor. Variations in the coke surface texture introduced by coke size and source allowed for making good predictions of the VBD of individual coke samples and mixtures of them (blends involving two sources and different sizes). Promising results were also obtained for coke blends collected from an industrial-baked carbon anode manufacturer.

Laboratory Evaluation of Selected Ways for Determining Black Carbon Source Emissions

EPA Science Inventory

A number of studies have been conducted which compare various methods for the determination of black carbon in the atmosphere. Relatively little attention has been paid, however, to similar measurements of black carbon from different types of emission sources. Of particular int...

A Precisely Assembled Carbon Source to Synthesize Fluorescent Carbon Quantum Dots for Sensing Probes and Bioimaging Agents.

PubMed

Qiao, Yiqiang; Luo, Dan; Yu, Min; Zhang, Ting; Cao, Xuanping; Zhou, Yanheng; Liu, Yan

2018-02-09

A broad range of carbon sources have been used to fabricate varieties of carbon quantum dots (CQDs). However, the majority of these studies concern the influence of primary structures and chemical compositions of precursors on the CQDs; it is still unclear whether or not the superstructures of carbon sources have effects on the physiochemical properties of the synthetic CQDs. In this work, the concept of molecular assembly is first introduced into the design of a new carbon source. Compared with the tropocollagen molecules, the hierarchically assembled collagen scaffolds, as a new carbon source, immobilize functional groups of the precursors through hydrogen bonds, electrostatic attraction, and hydrophobic forces. Moreover, the accumulation of functional groups in collagen self-assembly further promotes the covalent bond formation in the obtained CQDs through a hydrothermal process. Both of these two chemical superiorities give rise to high quality CQDs with enhanced emission. The assembled collagen scaffold-based CQDs with heteroatom doping exhibit superior stability, and could be further applied as effective fluorescent probes for Fe 3+ detection and cellular cytosol imaging. These findings open a wealth of possibilities to explore more nanocarbons from precursors with assembled superstructures. © 2018 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Method for in-situ cleaning of carbon contaminated surfaces

DOEpatents

Klebanoff, Leonard E.; Grunow, Philip; Graham, Jr., Samuel

2006-12-12

Activated gaseous species generated adjacent a carbon contaminated surface affords in-situ cleaning. A device for removing carbon contamination from a surface of the substrate includes (a) a housing defining a vacuum chamber in which the substrate is located; (b) a source of gaseous species; and (c) a source of electrons that are emitted to activate the gaseous species into activated gaseous species. The source of electrons preferably includes (i) a filament made of a material that generates thermionic electron emissions; (ii) a source of energy that is connected to the filament; and (iii) an electrode to which the emitted electrons are attracted. The device is particularly suited for photolithography systems with optic surfaces, e.g., mirrors, that are otherwise inaccessible unless the system is dismantled. A method of removing carbon contaminants from a substrate surface that is housed within a vacuum chamber is also disclosed. The method employs activated gaseous species that react with the carbon contaminants to form carbon containing gaseous byproducts.

Influence of regional biomass burning on the highly elevated organic carbon concentrations observed at Gosan, South Korea during a strong Asian dust period.

PubMed

Nguyen, Duc Luong; Kim, Jin Young; Ghim, Young Sung; Shim, Shang-Gyoo

2015-03-01

PM2.5 carbonaceous particles were measured at Gosan, South Korea during 29 March-11 April 2002 which includes a pollution period (30 March-01 April) when the highest concentrations of major anthropogenic species (nss-SO4 (2-), NO3 (-), and NH4 (+)) were observed and a strong Asian dust (AD) period (08-10 April) when the highest concentrations of mainly dust-originated trace elements (Al, Ca, Mg, and Fe) were seen. The concentrations of elemental carbon (EC) measured in the pollution period were higher than those measured in the strong AD period, whereas an inverse variation in the concentrations of organic carbon (OC) was observed. Based on the OC/EC ratios, the possible source that mainly contributed to the highly elevated OC concentrations measured in the strong AD period was biomass burning. The influence of the long-range transport of smoke plumes emitted from regional biomass burning sources was evaluated by using MODIS (Moderate Resolution Imaging Spectroradiometer) satellite data for fire locations and the potential source contribution function analysis. The most potential source regions of biomass burning were the Primorsky and Amur regions in Far Eastern Russia and southeastern and southwestern Siberia, Russia. Further discussion on the source characteristics suggested that the high OC concentrations measured in the strong AD period were significantly affected by the smoldering phase of biomass burning. In addition to biomass burning, secondary OC (SOC) formed during atmospheric long-range transport should be also considered as an important source of OC concentration measured at Gosan. Although this study dealt with the episodic case of the concurrent increase of dust and biomass burning particles, understanding the characteristics of heterogeneous mixing aerosol is essential in assessing the radiative forcing of aerosol.

Comprehensive assessment of PM2.5 physicochemical properties during the Southeast Asia dry season (southwest monsoon)

NASA Astrophysics Data System (ADS)

Khan, Md Firoz; Sulong, Nor Azura; Latif, Mohd Talib; Nadzir, Mohd Shahrul Mohd; Amil, Norhaniza; Hussain, Dini Fajrina Mohd; Lee, Vernon; Hosaini, Puteri Nurafidah; Shaharom, Suhana; Yusoff, Nur Amira Yasmin Mohd; Hoque, Hossain Mohammed Syedul; Chung, Jing Xiang; Sahani, Mazrura; Mohd Tahir, Norhayati; Juneng, Liew; Maulud, Khairul Nizam Abdul; Abdullah, Sharifah Mastura Syed; Fujii, Yusuke; Tohno, Susumu; Mizohata, Akira

2016-12-01

A comprehensive assessment of fine particulate matter (PM2.5) compositions during the Southeast Asia dry season is presented. Samples of PM2.5 were collected between 24 June and 14 September 2014 using a high-volume sampler. Water-soluble ions, trace species, rare earth elements, and a range of elemental carbon (EC) and organic carbon were analyzed. The characterization and source apportionment of PM2.5 were investigated. The results showed that the 24 h PM2.5 concentration ranged from 6.64 to 68.2 µg m-3. Meteorological driving factors strongly governed the diurnal concentration of aerosol, while the traffic in the morning and evening rush hours coincided with higher levels of CO and NO2. The correlation analysis for non sea-salt K+-EC showed that EC is potentially associated with biomass burning events, while the formation of secondary organic carbon had a moderate association with motor vehicle emissions. Positive matrix factorization (PMF) version 5.0 identified the sources of PM2.5: (i) biomass burning coupled with sea salt [I] (7%), (ii) aged sea salt and mixed industrial emissions (5%), (iii) road dust and fuel oil combustion (7%), (iv) coal-fired combustion (25%), (v) mineral dust (8%), (vi) secondary inorganic aerosol (SIA) coupled with F- (15%), and (vii) motor vehicle emissions coupled with sea salt [II] (24%). Motor vehicle emissions, SIA, and coal-fired power plant are the predominant sources contributing to PM2.5. The response of the potential source contribution function and Hybrid Single-Particle Lagrangian Integrated Trajectory backward trajectory model suggest that the outline of source regions were consistent to the sources by PMF 5.0.

Generation and Phenotypic Characterization of Aspergillus nidulans Methylisocitrate Lyase Deletion Mutants: Methylisocitrate Inhibits Growth and Conidiation

PubMed Central

Brock, Matthias

2005-01-01

Propionate is a very abundant carbon source in soil, and many microorganisms are able to use this as the sole carbon source. Nevertheless, propionate not only serves as a carbon source for filamentous fungi but also acts as a preservative when added to glucose containing media. To solve this contradiction between carbon source and preservative effect, propionate metabolism of Aspergillus nidulans was studied and revealed the methylcitrate cycle as the responsible pathway. Methylisocitrate lyase is one of the key enzymes of that cycle. It catalyzes the cleavage of methylisocitrate into succinate and pyruvate and completes the α-oxidation of propionate. Previously, methylisocitrate lyase was shown to be highly specific for the substrate (2R,3S)-2-methylisocitrate. Here, the identification of the genomic sequence of the corresponding gene and the generation of deletion mutants is reported. Deletion mutants did not grow on propionate as sole carbon and energy source and were severely inhibited during growth on alternative carbon sources, when propionate was present. The strongest inhibitory effect was observed, when glycerol was the main carbon source, followed by glucose and acetate. In addition, asexual conidiation was strongly impaired in the presence of propionate. These effects might be caused by competitive inhibition of the NADP-dependent isocitrate dehydrogenase, because the Ki of (2R,3S)-2-methylisocitrate, the product of the methylcitrate cycle, on NADP-dependent isocitrate dehydrogenase was determined as 1.55 μM. Other isomers had no effect on enzymatic activity. Therefore, methylisocitrate was identified as a potential toxic compound for cellular metabolism. PMID:16151139

Diagnosis of potential stressors adversely affecting benthic ...

EPA Pesticide Factsheets

Greenwich Bay is an urbanized embayment of Narragansett Bay potentially impacted by multiple stressors. The present study identified the important stressors affecting Greenwich Bay benthic fauna. First, existing data and information were used to confirm that the waterbody was impaired. Second, the presence of source, stressor, and effect were established. Then linkages between source, stressor, and effect were developed. This allows identification of probable stressors adversely affecting the waterbody. Three pollutant categories were assessed: chemicals, nutrients, and suspended sediments. This weight of evidence approach indicated that Greenwich Bay was primarily impacted by eutrophication-related stressors. The sediments of Greenwich Bay were carbon enriched and low dissolved oxygen concentrations were commonly seen, especially in the western portions of Greenwich Bay. The benthic community was depauperate, as would be expected under oxygen stress. Although our analysis indicated that contaminant loads in Greenwich Bay were at concentrations where adverse effects might be expected, no toxicity was observed, as a result of high levels of organic carbon in these sediments reducing contaminant bioavailability. Our analysis also indicated that suspended sediment impacts were likely nonexistent for much of the Bay. This analysis demonstrates that the diagnostic procedure was useful to organize and assess the potential stressors impacting the ecological well-being

Assessment of self-organizing maps to analyze sole-carbon source utilization profiles.

PubMed

Leflaive, Joséphine; Céréghino, Régis; Danger, Michaël; Lacroix, Gérard; Ten-Hage, Loïc

2005-07-01

The use of community-level physiological profiles obtained with Biolog microplates is widely employed to consider the functional diversity of bacterial communities. Biolog produces a great amount of data which analysis has been the subject of many studies. In most cases, after some transformations, these data were investigated with classical multivariate analyses. Here we provided an alternative to this method, that is the use of an artificial intelligence technique, the Self-Organizing Maps (SOM, unsupervised neural network). We used data from a microcosm study of algae-associated bacterial communities placed in various nutritive conditions. Analyses were carried out on the net absorbances at two incubation times for each substrates and on the chemical guild categorization of the total bacterial activity. Compared to Principal Components Analysis and cluster analysis, SOM appeared as a valuable tool for community classification, and to establish clear relationships between clusters of bacterial communities and sole-carbon sources utilization. Specifically, SOM offered a clear bidimensional projection of a relatively large volume of data and were easier to interpret than plots commonly obtained with multivariate analyses. They would be recommended to pattern the temporal evolution of communities' functional diversity.

A non-pulsating neutron star in the supernova remnant HESS J1731-347/G353.6-0.7 with a carbon atmosphere

NASA Astrophysics Data System (ADS)

Klochkov, D.; Pühlhofer, G.; Suleimanov, V.; Simon, S.; Werner, K.; Santangelo, A.

2013-08-01

Context. The central compact object (CCO) candidate in the center of the supernova remnant shell HESS J1731-347/G353.6-0.7 shows no pulsations and exhibits a blackbody-like X-ray spectrum. If the absence of pulsations is interpreted as evidence for the emitting surface area being the entire neutron star surface, the assumption of the measured flux being due to a blackbody emission translates into a source distance that is inconsistent with current estimates of the remnant's distance. Aims: With the best available observational data, we extended the pulse period search down to a sub-millisecond time scale and used a carbon atmosphere model to describe the X-ray spectrum of the CCO and to estimate geometrical parameters of the neutron star. Methods: To search for pulsations we used data of an observation of the source with XMM-Newton performed in timing mode. For the spectral analysis, we used earlier XMM-Newton observations performed in imaging mode, which permits a more accurate treatment of the background. The carbon atmosphere models used to fit the CCO spectrum are computed assuming hydrostatic and radiative equilibria and take into account pressure ionization and the presence of spectral lines. Results: Our timing analysis did not reveal any pulsations with a pulsed fraction above ~8% down to 0.2 ms. This finding further supports the hypothesis that the emitting surface area is the entire neutron star surface. The carbon atmosphere model provides a good fit to the CCO spectrum and leads to a normalization consistent with the available distance estimates of the remnant. The derived constraints on the mass and radius of the source are consistent with reasonable values of the neutron star mass and radius. After the CCO in Cas A, the CCO in HESS J1731-347/G353.6-0.7 is the second object of this class for which a carbon atmosphere model provides a consistent description of X-ray emission.

Characterization of emissions from South Asian biofuels and application to source apportionment of carbonaceous aerosol in the Himalayas

NASA Astrophysics Data System (ADS)

Stone, Elizabeth A.; Schauer, James J.; Pradhan, Bidya Banmali; Dangol, Pradeep Man; Habib, Gazala; Venkataraman, Chandra; Ramanathan, V.

2010-03-01

This study focuses on improving source apportionment of carbonaceous aerosol in South Asia and consists of three parts: (1) development of novel molecular marker-based profiles for real-world biofuel combustion, (2) application of these profiles to a year-long data set, and (3) evaluation of profiles by an in-depth sensitivity analysis. Emissions profiles for biomass fuels were developed through source testing of a residential stove commonly used in South Asia. Wood fuels were combusted at high and low rates, which corresponded to source profiles high in organic carbon (OC) or high in elemental carbon (EC), respectively. Crop wastes common to the region, including rice straw, mustard stalk, jute stalk, soybean stalk, and animal residue burnings, were also characterized. Biofuel profiles were used in a source apportionment study of OC and EC in Godavari, Nepal. This site is located in the foothills of the Himalayas and was selected for its well-mixed and regionally impacted air masses. At Godavari, daily samples of fine particulate matter (PM2.5) were collected throughout the year of 2006, and the annual trends in particulate mass, OC, and EC followed the occurrence of a regional haze in South Asia. Maximum concentrations occurred during the dry winter season and minimum concentrations occurred during the summer monsoon season. Specific organic compounds unique to aerosol sources, molecular markers, were measured in monthly composite samples. These markers implicated motor vehicles, coal combustion, biomass burning, cow dung burning, vegetative detritus, and secondary organic aerosol as sources of carbonaceous aerosol. A molecular marker-based chemical mass balance (CMB) model provided a quantitative assessment of primary source contributions to carbonaceous aerosol. The new profiles were compared to widely used biomass burning profiles from the literature in a sensitivity analysis. This analysis indicated a high degree of stability in estimates of source contributions to OC when different biomass profiles were used. The majority of OC was unapportioned to primary sources and was estimated to be of secondary origin, while biomass combustion was the next-largest source of OC. The CMB apportionment of EC to primary sources was unstable due to the diversity of biomass burning conditions in the region. The model results suggested that biomass burning and fossil fuel were important contributors to EC, but could not reconcile their relative contributions.

Near-term deployment of carbon capture and sequestration from biorefineries in the United States.

PubMed

Sanchez, Daniel L; Johnson, Nils; McCoy, Sean T; Turner, Peter A; Mach, Katharine J

2018-05-08

Capture and permanent geologic sequestration of biogenic CO 2 emissions may provide critical flexibility in ambitious climate change mitigation. However, most bioenergy with carbon capture and sequestration (BECCS) technologies are technically immature or commercially unavailable. Here, we evaluate low-cost, commercially ready CO 2 capture opportunities for existing ethanol biorefineries in the United States. The analysis combines process engineering, spatial optimization, and lifecycle assessment to consider the technical, economic, and institutional feasibility of near-term carbon capture and sequestration (CCS). Our modeling framework evaluates least cost source-sink relationships and aggregation opportunities for pipeline transport, which can cost-effectively transport small CO 2 volumes to suitable sequestration sites; 216 existing US biorefineries emit 45 Mt CO 2 annually from fermentation, of which 60% could be captured and compressed for pipeline transport for under $25/tCO 2 A sequestration credit, analogous to existing CCS tax credits, of $60/tCO 2 could incent 30 Mt of sequestration and 6,900 km of pipeline infrastructure across the United States. Similarly, a carbon abatement credit, analogous to existing tradeable CO 2 credits, of $90/tCO 2 can incent 38 Mt of abatement. Aggregation of CO 2 sources enables cost-effective long-distance pipeline transport to distant sequestration sites. Financial incentives under the low-carbon fuel standard in California and recent revisions to existing federal tax credits suggest a substantial near-term opportunity to permanently sequester biogenic CO 2 This financial opportunity could catalyze the growth of carbon capture, transport, and sequestration; improve the lifecycle impacts of conventional biofuels; support development of carbon-negative fuels; and help fulfill the mandates of low-carbon fuel policies across the United States. Copyright © 2018 the Author(s). Published by PNAS.

Baltic Sea Blue Carbon: Role of environmental factors influencing the carbon sink capacity of eelgrass (Zostera marina) meadows.

NASA Astrophysics Data System (ADS)

Röhr, E.; Holmer, M.; Boström, C.

2016-02-01

Although the global seagrass coverage area is less than 0.2 % of the worlds ocean floor, the carbon sink capacity of seagrasses may account up to 18 % of oceanic carbon burial and thus play a critical structural and functional role in many coastal ecosystems. Recent studies have shown considerable variation in the global estimates for seagrass meadow Corg accumulation rates and stocks, and indicate lack of understanding the factors influencing this variability. We sampled 20 eelgrass (Zostera marina) meadows in Finland and Denmark to study the variation in Corg accumulation rates and stocks within the Baltic Sea area. The study sites in both regions spanned a gradient from sheltered to exposed locations. The estimates for Corg accumulation rates at the Finnish eelgrass meadows were two orders of magnitude lower than the estimates for the Danish sites. The Corg stock integrated over the top 25 cm of sediment showed similar pattern, suggesting that the Finnish eelgrass meadows are carbon sources rather than carbon sinks, and the produced Corg is exported from the meadows. In contrast, at the Danish sites both Corg accumulation rates and areal Corg stock was more varying suggesting, that in this region the meadows function both as carbon sinks and sources. Our analysis further showed that a large percentage (> 55 %) of the variation in the Corg stocks was explained by sediment characteristics (density, fraction of silt and grain size distribution). In addition, the contribution of Zostera marina detritus to the sediment Corg pool explained >14 % of the variation in the Corg stocks. In order to get more reliable regional and global estimates of the role of seagrass meadows in the ocean carbon cycle, more studies accounting for the full range of environmental and species characteristics are urgently needed.

Transcriptional and Proteomic Responses to Carbon Starvation in Paracoccidioides

PubMed Central

Lima, Patrícia de Sousa; Casaletti, Luciana; Bailão, Alexandre Melo; de Vasconcelos, Ana Tereza Ribeiro; Fernandes, Gabriel da Rocha; Soares, Célia Maria de Almeida

2014-01-01

Background The genus Paracoccidioides comprises human thermal dimorphic fungi, which cause paracoccidioidomycosis (PCM), an important mycosis in Latin America. Adaptation to environmental conditions is key to fungal survival during human host infection. The adaptability of carbon metabolism is a vital fitness attribute during pathogenesis. Methodology/Principal Findings The fungal pathogen Paracoccidioides spp. is exposed to numerous adverse conditions, such as nutrient deprivation, in the human host. In this study, a comprehensive response of Paracoccidioides, Pb01, under carbon starvation was investigated using high-resolution transcriptomic (RNAseq) and proteomic (NanoUPLC-MSE) approaches. A total of 1,063 transcripts and 421 proteins were differentially regulated, providing a global view of metabolic reprogramming during carbon starvation. The main changes were those related to cells shifting to gluconeogenesis and ethanol production, supported by the degradation of amino acids and fatty acids and by the modulation of the glyoxylate and tricarboxylic cycles. This proposed carbon flow hypothesis was supported by gene and protein expression profiles assessed using qRT-PCR and western blot analysis, respectively, as well as using enzymatic, cell dry weight and fungus-macrophage interaction assays. The carbon source provides a survival advantage to Paracoccidioides inside macrophages. Conclusions/Significance For a complete understanding of the physiological processes in an organism, the integration of approaches addressing different levels of regulation is important. To the best of our knowledge, this report presents the first description of the responses of Paracoccidioides spp. to host-like conditions using large-scale expression approaches. The alternative metabolic pathways that could be adopted by the organism during carbon starvation can be important for a better understanding of the fungal adaptation to the host, because systems for detecting and responding to carbon sources play a major role in adaptation and persistence in the host niche. PMID:24811072

Multimolecular tracers of terrestrial carbon transfer across the pan-Arctic: 14C characteristics of sedimentary carbon components and their environmental controls

NASA Astrophysics Data System (ADS)

Feng, Xiaojuan; Gustafsson, Örjan; Holmes, R. Max; Vonk, Jorien E.; van Dongen, Bart E.; Semiletov, Igor P.; Dudarev, Oleg V.; Yunker, Mark B.; Macdonald, Robie W.; Wacker, Lukas; Montluçon, Daniel B.; Eglinton, Timothy I.

2015-11-01

Distinguishing the sources, ages, and fate of various terrestrial organic carbon (OC) pools mobilized from heterogeneous Arctic landscapes is key to assessing climatic impacts on the fluvial release of carbon from permafrost. Through molecular 14C measurements, including novel analyses of suberin- and/or cutin-derived diacids (DAs) and hydroxy fatty acids (FAs), we compared the radiocarbon characteristics of a comprehensive suite of terrestrial markers (including plant wax lipids, cutin, suberin, lignin, and hydroxy phenols) in the sedimentary particles from nine major arctic and subarctic rivers in order to establish a benchmark assessment of the mobilization patterns of terrestrial OC pools across the pan-Arctic. Terrestrial lipids, including suberin-derived longer-chain DAs (C24,26,28), plant wax FAs (C24,26,28), and n-alkanes (C27,29,31), incorporated significant inputs of aged carbon, presumably from deeper soil horizons. Mobilization and translocation of these "old" terrestrial carbon components was dependent on nonlinear processes associated with permafrost distributions. By contrast, shorter-chain (C16,18) DAs and lignin phenols (as well as hydroxy phenols in rivers outside eastern Eurasian Arctic) were much more enriched in 14C, suggesting incorporation of relatively young carbon supplied by runoff processes from recent vegetation debris and surface layers. Furthermore, the radiocarbon content of terrestrial markers is heavily influenced by specific OC sources and degradation status. Overall, multitracer molecular 14C analysis sheds new light on the mobilization of terrestrial OC from arctic watersheds. Our findings of distinct ages for various terrestrial carbon components may aid in elucidating fate of different terrestrial OC pools in the face of increasing arctic permafrost thaw.

Factors Affecting Exocellular Polysaccharide Production by Lactobacillus delbrueckii subsp. bulgaricus Grown in a Chemically Defined Medium†

PubMed Central

Petry, Sandrine; Furlan, Sylviane; Crepeau, Marie-Jeanne; Cerning, Jutta; Desmazeaud, Michel

2000-01-01

We developed a chemically defined medium (CDM) containing lactose or glucose as the carbon source that supports growth and exopolysaccharide (EPS) production of two strains of Lactobacillus delbrueckii subsp. bulgaricus. The factors found to affect EPS production in this medium were oxygen, pH, temperature, and medium constituents, such as orotic acid and the carbon source. EPS production was greatest during the stationary phase. Composition analysis of EPS isolated at different growth phases and produced under different fermentation conditions (varying carbon source or pH) revealed that the component sugars were the same. The EPS from strain L. delbrueckii subsp. bulgaricus CNRZ 1187 contained galactose and glucose, and that of strain L. delbrueckii subsp. bulgaricus CNRZ 416 contained galactose, glucose, and rhamnose. However, the relative proportions of the individual monosaccharides differed, suggesting that repeating unit structures can vary according to specific medium alterations. Under pH-controlled fermentation conditions, L. delbrueckii subsp. bulgaricus strains produced as much EPS in the CDM as in milk. Furthermore, the relative proportions of individual monosaccharides of EPS produced in pH-controlled CDM or in milk were very similar. The CDM we developed may be a useful model and an alternative to milk in studies of EPS production. PMID:10919802