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Sample records for carlo line transport

  1. Comparison of Implicit and Symbolic Implicit Monte Carlo Line Transport with Frequency Weight Vector Extension

    SciTech Connect

    McKinley, M S; Brooks III, E D; Szoke, A

    2002-12-03

    We compare the Implicit Monte Carlo (IMC) technique to the Symbolic IMC (SIMC) technique, with and without weight vectors in frequency space, for time-dependent line transport in the presence of collisional pumping. We examine the efficiency and accuracy of the IMC and SIMC methods for test problems involving the evolution of a collisionally pumped trapping problem to its steady-state, the surface heating of a cold medium by a beam, and the diffusion of energy from a localized region that is collisionally pumped. The importance of spatial biasing and teleportation for problems involving high opacity is demonstrated. Our numerical solution, along with its associated teleportation error, is checked against theoretical calculations for the last example.

  2. Comparison of Implicit and Symbolic Implicit Monte Carlo Line Transport With Frequency Weight Vector Extension

    SciTech Connect

    McKinley, M S; Brooks III, E D; Szoke, A

    2002-03-20

    We compare the Implicit Monte Carlo (IMC) technique to the Symbolic IMC (SIMC) technique, with and without weight vectors in frequency space, for time-dependent line transport in the presence of collisional pumping. We examine the efficiency and accuracy of the IMC and SIMC methods for examples involving the evolution of a collisionally pumped trapping problem to steady-state, the surface heating of cold media by a beam, and the diffusion of energy from a localized region that is collisionally pumped. The importance of spatial biasing and teleportation for problems involving high opacity is demonstrated. Our numerical solution, along with its associated teleportation error, is checked against theoretical calculations for the last example.

  3. A generalized framework for in-line energy deposition during steady-state Monte Carlo radiation transport

    SciTech Connect

    Griesheimer, D. P.; Stedry, M. H.

    2013-07-01

    A rigorous treatment of energy deposition in a Monte Carlo transport calculation, including coupled transport of all secondary and tertiary radiations, increases the computational cost of a simulation dramatically, making fully-coupled heating impractical for many large calculations, such as 3-D analysis of nuclear reactor cores. However, in some cases, the added benefit from a full-fidelity energy-deposition treatment is negligible, especially considering the increased simulation run time. In this paper we present a generalized framework for the in-line calculation of energy deposition during steady-state Monte Carlo transport simulations. This framework gives users the ability to select among several energy-deposition approximations with varying levels of fidelity. The paper describes the computational framework, along with derivations of four energy-deposition treatments. Each treatment uses a unique set of self-consistent approximations, which ensure that energy balance is preserved over the entire problem. By providing several energy-deposition treatments, each with different approximations for neglecting the energy transport of certain secondary radiations, the proposed framework provides users the flexibility to choose between accuracy and computational efficiency. Numerical results are presented, comparing heating results among the four energy-deposition treatments for a simple reactor/compound shielding problem. The results illustrate the limitations and computational expense of each of the four energy-deposition treatments. (authors)

  4. Challenges of Monte Carlo Transport

    SciTech Connect

    Long, Alex Roberts

    2016-06-10

    These are slides from a presentation for Parallel Summer School at Los Alamos National Laboratory. Solving discretized partial differential equations (PDEs) of interest can require a large number of computations. We can identify concurrency to allow parallel solution of discrete PDEs. Simulated particles histories can be used to solve the Boltzmann transport equation. Particle histories are independent in neutral particle transport, making them amenable to parallel computation. Physical parameters and method type determine the data dependencies of particle histories. Data requirements shape parallel algorithms for Monte Carlo. Then, Parallel Computational Physics and Parallel Monte Carlo are discussed and, finally, the results are given. The mesh passing method greatly simplifies the IMC implementation and allows simple load-balancing. Using MPI windows and passive, one-sided RMA further simplifies the implementation by removing target synchronization. The author is very interested in implementations of PGAS that may allow further optimization for one-sided, read-only memory access (e.g. Open SHMEM). The MPICH_RMA_OVER_DMAPP option and library is required to make one-sided messaging scale on Trinitite - Moonlight scales poorly. Interconnect specific libraries or functions are likely necessary to ensure performance. BRANSON has been used to directly compare the current standard method to a proposed method on idealized problems. The mesh passing algorithm performs well on problems that are designed to show the scalability of the particle passing method. BRANSON can now run load-imbalanced, dynamic problems. Potential avenues of improvement in the mesh passing algorithm will be implemented and explored. A suite of test problems that stress DD methods will elucidate a possible path forward for production codes.

  5. Scalable Domain Decomposed Monte Carlo Particle Transport

    SciTech Connect

    O'Brien, Matthew Joseph

    2013-12-05

    In this dissertation, we present the parallel algorithms necessary to run domain decomposed Monte Carlo particle transport on large numbers of processors (millions of processors). Previous algorithms were not scalable, and the parallel overhead became more computationally costly than the numerical simulation.

  6. Parallel and Portable Monte Carlo Particle Transport

    NASA Astrophysics Data System (ADS)

    Lee, S. R.; Cummings, J. C.; Nolen, S. D.; Keen, N. D.

    1997-08-01

    We have developed a multi-group, Monte Carlo neutron transport code in C++ using object-oriented methods and the Parallel Object-Oriented Methods and Applications (POOMA) class library. This transport code, called MC++, currently computes k and α eigenvalues of the neutron transport equation on a rectilinear computational mesh. It is portable to and runs in parallel on a wide variety of platforms, including MPPs, clustered SMPs, and individual workstations. It contains appropriate classes and abstractions for particle transport and, through the use of POOMA, for portable parallelism. Current capabilities are discussed, along with physics and performance results for several test problems on a variety of hardware, including all three Accelerated Strategic Computing Initiative (ASCI) platforms. Current parallel performance indicates the ability to compute α-eigenvalues in seconds or minutes rather than days or weeks. Current and future work on the implementation of a general transport physics framework (TPF) is also described. This TPF employs modern C++ programming techniques to provide simplified user interfaces, generic STL-style programming, and compile-time performance optimization. Physics capabilities of the TPF will be extended to include continuous energy treatments, implicit Monte Carlo algorithms, and a variety of convergence acceleration techniques such as importance combing.

  7. THE MCNPX MONTE CARLO RADIATION TRANSPORT CODE

    SciTech Connect

    WATERS, LAURIE S.; MCKINNEY, GREGG W.; DURKEE, JOE W.; FENSIN, MICHAEL L.; JAMES, MICHAEL R.; JOHNS, RUSSELL C.; PELOWITZ, DENISE B.

    2007-01-10

    MCNPX (Monte Carlo N-Particle eXtended) is a general-purpose Monte Carlo radiation transport code with three-dimensional geometry and continuous-energy transport of 34 particles and light ions. It contains flexible source and tally options, interactive graphics, and support for both sequential and multi-processing computer platforms. MCNPX is based on MCNP4B, and has been upgraded to most MCNP5 capabilities. MCNP is a highly stable code tracking neutrons, photons and electrons, and using evaluated nuclear data libraries for low-energy interaction probabilities. MCNPX has extended this base to a comprehensive set of particles and light ions, with heavy ion transport in development. Models have been included to calculate interaction probabilities when libraries are not available. Recent additions focus on the time evolution of residual nuclei decay, allowing calculation of transmutation and delayed particle emission. MCNPX is now a code of great dynamic range, and the excellent neutronics capabilities allow new opportunities to simulate devices of interest to experimental particle physics; particularly calorimetry. This paper describes the capabilities of the current MCNPX version 2.6.C, and also discusses ongoing code development.

  8. Monte Carlo radiation transport¶llelism

    SciTech Connect

    Cox, L. J.; Post, S. E.

    2002-01-01

    This talk summarizes the main aspects of the LANL ASCI Eolus project and its major unclassified code project, MCNP. The MCNP code provide a state-of-the-art Monte Carlo radiation transport to approximately 3000 users world-wide. Almost all hardware platforms are supported because we strictly adhere to the FORTRAN-90/95 standard. For parallel processing, MCNP uses a mixture of OpenMp combined with either MPI or PVM (shared and distributed memory). This talk summarizes our experiences on various platforms using MPI with and without OpenMP. These platforms include PC-Windows, Intel-LINUX, BlueMountain, Frost, ASCI-Q and others.

  9. Monte Carlo simulation for the transport beamline

    NASA Astrophysics Data System (ADS)

    Romano, F.; Attili, A.; Cirrone, G. A. P.; Carpinelli, M.; Cuttone, G.; Jia, S. B.; Marchetto, F.; Russo, G.; Schillaci, F.; Scuderi, V.; Tramontana, A.; Varisano, A.

    2013-07-01

    In the framework of the ELIMED project, Monte Carlo (MC) simulations are widely used to study the physical transport of charged particles generated by laser-target interactions and to preliminarily evaluate fluence and dose distributions. An energy selection system and the experimental setup for the TARANIS laser facility in Belfast (UK) have been already simulated with the GEANT4 (GEometry ANd Tracking) MC toolkit. Preliminary results are reported here. Future developments are planned to implement a MC based 3D treatment planning in order to optimize shots number and dose delivery.

  10. Monte Carlo Particle Transport: Algorithm and Performance Overview

    SciTech Connect

    Gentile, N; Procassini, R; Scott, H

    2005-06-02

    Monte Carlo methods are frequently used for neutron and radiation transport. These methods have several advantages, such as relative ease of programming and dealing with complex meshes. Disadvantages include long run times and statistical noise. Monte Carlo photon transport calculations also often suffer from inaccuracies in matter temperature due to the lack of implicitness. In this paper we discuss the Monte Carlo algorithm as it is applied to neutron and photon transport, detail the differences between neutron and photon Monte Carlo, and give an overview of the ways the numerical method has been modified to deal with issues that arise in photon Monte Carlo simulations.

  11. Scalable Domain Decomposed Monte Carlo Particle Transport

    NASA Astrophysics Data System (ADS)

    O'Brien, Matthew Joseph

    In this dissertation, we present the parallel algorithms necessary to run domain decomposed Monte Carlo particle transport on large numbers of processors (millions of processors). Previous algorithms were not scalable, and the parallel overhead became more computationally costly than the numerical simulation. The main algorithms we consider are: • Domain decomposition of constructive solid geometry: enables extremely large calculations in which the background geometry is too large to fit in the memory of a single computational node. • Load Balancing: keeps the workload per processor as even as possible so the calculation runs efficiently. • Global Particle Find: if particles are on the wrong processor, globally resolve their locations to the correct processor based on particle coordinate and background domain. • Visualizing constructive solid geometry, sourcing particles, deciding that particle streaming communication is completed and spatial redecomposition. These algorithms are some of the most important parallel algorithms required for domain decomposed Monte Carlo particle transport. We demonstrate that our previous algorithms were not scalable, prove that our new algorithms are scalable, and run some of the algorithms up to 2 million MPI processes on the Sequoia supercomputer.

  12. Vectorization of Monte Carlo particle transport

    SciTech Connect

    Burns, P.J.; Christon, M.; Schweitzer, R.; Lubeck, O.M.; Wasserman, H.J.; Simmons, M.L.; Pryor, D.V. . Computer Center; Los Alamos National Lab., NM; Supercomputing Research Center, Bowie, MD )

    1989-01-01

    Fully vectorized versions of the Los Alamos National Laboratory benchmark code Gamteb, a Monte Carlo photon transport algorithm, were developed for the Cyber 205/ETA-10 and Cray X-MP/Y-MP architectures. Single-processor performance measurements of the vector and scalar implementations were modeled in a modified Amdahl's Law that accounts for additional data motion in the vector code. The performance and implementation strategy of the vector codes are related to architectural features of each machine. Speedups between fifteen and eighteen for Cyber 205/ETA-10 architectures, and about nine for CRAY X-MP/Y-MP architectures are observed. The best single processor execution time for the problem was 0.33 seconds on the ETA-10G, and 0.42 seconds on the CRAY Y-MP. 32 refs., 12 figs., 1 tab.

  13. Shift: A Massively Parallel Monte Carlo Radiation Transport Package

    SciTech Connect

    Pandya, Tara M; Johnson, Seth R; Davidson, Gregory G; Evans, Thomas M; Hamilton, Steven P

    2015-01-01

    This paper discusses the massively-parallel Monte Carlo radiation transport package, Shift, developed at Oak Ridge National Laboratory. It reviews the capabilities, implementation, and parallel performance of this code package. Scaling results demonstrate very good strong and weak scaling behavior of the implemented algorithms. Benchmark results from various reactor problems show that Shift results compare well to other contemporary Monte Carlo codes and experimental results.

  14. Concurrent Monte Carlo transport and fluence optimization with fluence adjusting scalable transport Monte Carlo

    PubMed Central

    Svatos, M.; Zankowski, C.; Bednarz, B.

    2016-01-01

    Purpose: The future of radiation therapy will require advanced inverse planning solutions to support single-arc, multiple-arc, and “4π” delivery modes, which present unique challenges in finding an optimal treatment plan over a vast search space, while still preserving dosimetric accuracy. The successful clinical implementation of such methods would benefit from Monte Carlo (MC) based dose calculation methods, which can offer improvements in dosimetric accuracy when compared to deterministic methods. The standard method for MC based treatment planning optimization leverages the accuracy of the MC dose calculation and efficiency of well-developed optimization methods, by precalculating the fluence to dose relationship within a patient with MC methods and subsequently optimizing the fluence weights. However, the sequential nature of this implementation is computationally time consuming and memory intensive. Methods to reduce the overhead of the MC precalculation have been explored in the past, demonstrating promising reductions of computational time overhead, but with limited impact on the memory overhead due to the sequential nature of the dose calculation and fluence optimization. The authors propose an entirely new form of “concurrent” Monte Carlo treat plan optimization: a platform which optimizes the fluence during the dose calculation, reduces wasted computation time being spent on beamlets that weakly contribute to the final dose distribution, and requires only a low memory footprint to function. In this initial investigation, the authors explore the key theoretical and practical considerations of optimizing fluence in such a manner. Methods: The authors present a novel derivation and implementation of a gradient descent algorithm that allows for optimization during MC particle transport, based on highly stochastic information generated through particle transport of very few histories. A gradient rescaling and renormalization algorithm, and the

  15. Improved geometry representations for Monte Carlo radiation transport.

    SciTech Connect

    Martin, Matthew Ryan

    2004-08-01

    ITS (Integrated Tiger Series) permits a state-of-the-art Monte Carlo solution of linear time-integrated coupled electron/photon radiation transport problems with or without the presence of macroscopic electric and magnetic fields of arbitrary spatial dependence. ITS allows designers to predict product performance in radiation environments.

  16. Full 3D visualization tool-kit for Monte Carlo and deterministic transport codes

    SciTech Connect

    Frambati, S.; Frignani, M.

    2012-07-01

    We propose a package of tools capable of translating the geometric inputs and outputs of many Monte Carlo and deterministic radiation transport codes into open source file formats. These tools are aimed at bridging the gap between trusted, widely-used radiation analysis codes and very powerful, more recent and commonly used visualization software, thus supporting the design process and helping with shielding optimization. Three main lines of development were followed: mesh-based analysis of Monte Carlo codes, mesh-based analysis of deterministic codes and Monte Carlo surface meshing. The developed kit is considered a powerful and cost-effective tool in the computer-aided design for radiation transport code users of the nuclear world, and in particular in the fields of core design and radiation analysis. (authors)

  17. Monte-Carlo Study of Axonal Transport in a Neuron

    NASA Astrophysics Data System (ADS)

    Shrestha, Uttam; Yu, Clare; Jia, Zhiyuan; Erickson, Robert; Gross, Steven

    2011-03-01

    A living cell has an infrastructure much like that of a city. A key component is the transportation system that consists of roads (filaments) and molecular motors (proteins) that haul cargo along these roads. We will present a Monte Carlo simulation of intracellular transport inside an axon in which motor proteins carry cargos along microtubules and are able to switch from one microtubule to another. The breakdown of intracellular transport in neurons has been associated with neurodegenerative diseases such as Alzheimer's, Lou Gehig's disease (ALS), and Huntingdon's disease. This work was supported by NIGMS grant number 5R01GM79156.

  18. Implict Monte Carlo Radiation Transport Simulations of Four Test Problems

    SciTech Connect

    Gentile, N

    2007-08-01

    Radiation transport codes, like almost all codes, are difficult to develop and debug. It is helpful to have small, easy to run test problems with known answers to use in development and debugging. It is also prudent to re-run test problems periodically during development to ensure that previous code capabilities have not been lost. We describe four radiation transport test problems with analytic or approximate analytic answers. These test problems are suitable for use in debugging and testing radiation transport codes. We also give results of simulations of these test problems performed with an Implicit Monte Carlo photonics code.

  19. Monte Carlo simulations of electron transport in strongly attaching gases

    NASA Astrophysics Data System (ADS)

    Petrovic, Zoran; Miric, Jasmina; Simonovic, Ilija; Bosnjakovic, Danko; Dujko, Sasa

    2016-09-01

    Extensive loss of electrons in strongly attaching gases imposes significant difficulties in Monte Carlo simulations at low electric field strengths. In order to compensate for such losses, some kind of rescaling procedures must be used. In this work, we discuss two rescaling procedures for Monte Carlo simulations of electron transport in strongly attaching gases: (1) discrete rescaling, and (2) continuous rescaling. The discrete rescaling procedure is based on duplication of electrons randomly chosen from the remaining swarm at certain discrete time steps. The continuous rescaling procedure employs a dynamically defined fictitious ionization process with the constant collision frequency chosen to be equal to the attachment collision frequency. These procedures should not in any way modify the distribution function. Monte Carlo calculations of transport coefficients for electrons in SF6 and CF3I are performed in a wide range of electric field strengths. However, special emphasis is placed upon the analysis of transport phenomena in the limit of lower electric fields where the transport properties are strongly affected by electron attachment. Two important phenomena arise: (1) the reduction of the mean energy with increasing E/N for electrons in SF6, and (2) the occurrence of negative differential conductivity in the bulk drift velocity of electrons in both SF6 and CF3I.

  20. Applications of the Monte Carlo radiation transport toolkit at LLNL

    NASA Astrophysics Data System (ADS)

    Sale, Kenneth E.; Bergstrom, Paul M., Jr.; Buck, Richard M.; Cullen, Dermot; Fujino, D.; Hartmann-Siantar, Christine

    1999-09-01

    Modern Monte Carlo radiation transport codes can be applied to model most applications of radiation, from optical to TeV photons, from thermal neutrons to heavy ions. Simulations can include any desired level of detail in three-dimensional geometries using the right level of detail in the reaction physics. The technology areas to which we have applied these codes include medical applications, defense, safety and security programs, nuclear safeguards and industrial and research system design and control. The main reason such applications are interesting is that by using these tools substantial savings of time and effort (i.e. money) can be realized. In addition it is possible to separate out and investigate computationally effects which can not be isolated and studied in experiments. In model calculations, just as in real life, one must take care in order to get the correct answer to the right question. Advancing computing technology allows extensions of Monte Carlo applications in two directions. First, as computers become more powerful more problems can be accurately modeled. Second, as computing power becomes cheaper Monte Carlo methods become accessible more widely. An overview of the set of Monte Carlo radiation transport tools in use a LLNL will be presented along with a few examples of applications and future directions.

  1. Monte Carlo simulations of charge transport in heterogeneous organic semiconductors

    NASA Astrophysics Data System (ADS)

    Aung, Pyie Phyo; Khanal, Kiran; Luettmer-Strathmann, Jutta

    2015-03-01

    The efficiency of organic solar cells depends on the morphology and electronic properties of the active layer. Research teams have been experimenting with different conducting materials to achieve more efficient solar panels. In this work, we perform Monte Carlo simulations to study charge transport in heterogeneous materials. We have developed a coarse-grained lattice model of polymeric photovoltaics and use it to generate active layers with ordered and disordered regions. We determine carrier mobilities for a range of conditions to investigate the effect of the morphology on charge transport.

  2. Monte Carlo radiation transport: A revolution in science

    SciTech Connect

    Hendricks, J.

    1993-04-01

    When Enrico Fermi, Stan Ulam, Nicholas Metropolis, John von Neuman, and Robert Richtmyer invented the Monte Carlo method fifty years ago, little could they imagine the far-flung consequences, the international applications, and the revolution in science epitomized by their abstract mathematical method. The Monte Carlo method is used in a wide variety of fields to solve exact computational models approximately by statistical sampling. It is an alternative to traditional physics modeling methods which solve approximate computational models exactly by deterministic methods. Modern computers and improved methods, such as variance reduction, have enhanced the method to the point of enabling a true predictive capability in areas such as radiation or particle transport. This predictive capability has contributed to a radical change in the way science is done: design and understanding come from computations built upon experiments rather than being limited to experiments, and the computer codes doing the computations have become the repository for physics knowledge. The MCNP Monte Carlo computer code effort at Los Alamos is an example of this revolution. Physicians unfamiliar with physics details can design cancer treatments using physics buried in the MCNP computer code. Hazardous environments and hypothetical accidents can be explored. Many other fields, from underground oil well exploration to aerospace, from physics research to energy production, from safety to bulk materials processing, benefit from MCNP, the Monte Carlo method, and the revolution in science.

  3. Multidiscontinuity algorithm for world-line Monte Carlo simulations.

    PubMed

    Kato, Yasuyuki

    2013-01-01

    We introduce a multidiscontinuity algorithm for the efficient global update of world-line configurations in Monte Carlo simulations of interacting quantum systems. This algorithm is a generalization of the two-discontinuity algorithms introduced in Refs. [N. Prokof'ev, B. Svistunov, and I. Tupitsyn, Phys. Lett. A 238, 253 (1998)] and [O. F. Syljuåsen and A. W. Sandvik, Phys. Rev. E 66, 046701 (2002)]. This generalization is particularly effective for studying Bose-Einstein condensates (BECs) of composite particles. In particular, we demonstrate the utility of the generalized algorithm by simulating a Hamiltonian for an S=1 antiferromagnet with strong uniaxial single-ion anisotropy. The multidiscontinuity algorithm not only solves the freezing problem that arises in this limit, but also allows the efficient computing of the off-diagonal correlator that characterizes a BEC of composite particles.

  4. New Capabilities in Mercury: A Modern, Monte Carlo Particle Transport Code

    SciTech Connect

    Procassini, R J; Cullen, D E; Greenman, G M; Hagmann, C A; Kramer, K J; McKinley, M S; O'Brien, M J; Taylor, J M

    2007-03-08

    The new physics, algorithmic and computer science capabilities of the Mercury general-purpose Monte Carlo particle transport code are discussed. The new physics and algorithmic features include in-line energy deposition and isotopic depletion, significant enhancements to the tally and source capabilities, diagnostic ray-traced particles, support for multi-region hybrid (mesh and combinatorial geometry) systems, and a probability of initiation method. Computer science enhancements include a second method of dynamically load-balancing parallel calculations, improved methods for visualizing 3-D combinatorial geometries and initial implementation of an in-line visualization capabilities.

  5. grmonty: A MONTE CARLO CODE FOR RELATIVISTIC RADIATIVE TRANSPORT

    SciTech Connect

    Dolence, Joshua C.; Gammie, Charles F.; Leung, Po Kin; Moscibrodzka, Monika

    2009-10-01

    We describe a Monte Carlo radiative transport code intended for calculating spectra of hot, optically thin plasmas in full general relativity. The version we describe here is designed to model hot accretion flows in the Kerr metric and therefore incorporates synchrotron emission and absorption, and Compton scattering. The code can be readily generalized, however, to account for other radiative processes and an arbitrary spacetime. We describe a suite of test problems, and demonstrate the expected N {sup -1/2} convergence rate, where N is the number of Monte Carlo samples. Finally, we illustrate the capabilities of the code with a model calculation, a spectrum of the slowly accreting black hole Sgr A* based on data provided by a numerical general relativistic MHD model of the accreting plasma.

  6. Benchmarking of Proton Transport in Super Monte Carlo Simulation Program

    NASA Astrophysics Data System (ADS)

    Wang, Yongfeng; Li, Gui; Song, Jing; Zheng, Huaqing; Sun, Guangyao; Hao, Lijuan; Wu, Yican

    2014-06-01

    The Monte Carlo (MC) method has been traditionally applied in nuclear design and analysis due to its capability of dealing with complicated geometries and multi-dimensional physics problems as well as obtaining accurate results. The Super Monte Carlo Simulation Program (SuperMC) is developed by FDS Team in China for fusion, fission, and other nuclear applications. The simulations of radiation transport, isotope burn-up, material activation, radiation dose, and biology damage could be performed using SuperMC. Complicated geometries and the whole physical process of various types of particles in broad energy scale can be well handled. Bi-directional automatic conversion between general CAD models and full-formed input files of SuperMC is supported by MCAM, which is a CAD/image-based automatic modeling program for neutronics and radiation transport simulation. Mixed visualization of dynamical 3D dataset and geometry model is supported by RVIS, which is a nuclear radiation virtual simulation and assessment system. Continuous-energy cross section data from hybrid evaluated nuclear data library HENDL are utilized to support simulation. Neutronic fixed source and critical design parameters calculates for reactors of complex geometry and material distribution based on the transport of neutron and photon have been achieved in our former version of SuperMC. Recently, the proton transport has also been intergrated in SuperMC in the energy region up to 10 GeV. The physical processes considered for proton transport include electromagnetic processes and hadronic processes. The electromagnetic processes include ionization, multiple scattering, bremsstrahlung, and pair production processes. Public evaluated data from HENDL are used in some electromagnetic processes. In hadronic physics, the Bertini intra-nuclear cascade model with exitons, preequilibrium model, nucleus explosion model, fission model, and evaporation model are incorporated to treat the intermediate energy nuclear

  7. Current status of the PSG Monte Carlo neutron transport code

    SciTech Connect

    Leppaenen, J.

    2006-07-01

    PSG is a new Monte Carlo neutron transport code, developed at the Technical Research Centre of Finland (VTT). The code is mainly intended for fuel assembly-level reactor physics calculations, such as group constant generation for deterministic reactor simulator codes. This paper presents the current status of the project and the essential capabilities of the code. Although the main application of PSG is in lattice calculations, the geometry is not restricted in two dimensions. This paper presents the validation of PSG against the experimental results of the three-dimensional MOX fuelled VENUS-2 reactor dosimetry benchmark. (authors)

  8. Dynamic Load Balancing of Parallel Monte Carlo Transport Calculations

    SciTech Connect

    O'Brien, M; Taylor, J; Procassini, R

    2004-12-22

    The performance of parallel Monte Carlo transport calculations which use both spatial and particle parallelism is increased by dynamically assigning processors to the most worked domains. Since the particle work load varies over the course of the simulation, this algorithm determines each cycle if dynamic load balancing would speed up the calculation. If load balancing is required, a small number of particle communications are initiated in order to achieve load balance. This method has decreased the parallel run time by more than a factor of three for certain criticality calculations.

  9. The macro response Monte Carlo method for electron transport

    SciTech Connect

    Svatos, M M

    1998-09-01

    The main goal of this thesis was to prove the feasibility of basing electron depth dose calculations in a phantom on first-principles single scatter physics, in an amount of time that is equal to or better than current electron Monte Carlo methods. The Macro Response Monte Carlo (MRMC) method achieves run times that are on the order of conventional electron transport methods such as condensed history, with the potential to be much faster. This is possible because MRMC is a Local-to-Global method, meaning the problem is broken down into two separate transport calculations. The first stage is a local, in this case, single scatter calculation, which generates probability distribution functions (PDFs) to describe the electron's energy, position and trajectory after leaving the local geometry, a small sphere or "kugel" A number of local kugel calculations were run for calcium and carbon, creating a library of kugel data sets over a range of incident energies (0.25 MeV - 8 MeV) and sizes (0.025 cm to 0.1 cm in radius). The second transport stage is a global calculation, where steps that conform to the size of the kugels in the library are taken through the global geometry. For each step, the appropriate PDFs from the MRMC library are sampled to determine the electron's new energy, position and trajectory. The electron is immediately advanced to the end of the step and then chooses another kugel to sample, which continues until transport is completed. The MRMC global stepping code was benchmarked as a series of subroutines inside of the Peregrine Monte Carlo code. It was compared to Peregrine's class II condensed history electron transport package, EGS4, and MCNP for depth dose in simple phantoms having density inhomogeneities. Since the kugels completed in the library were of relatively small size, the zoning of the phantoms was scaled down from a clinical size, so that the energy deposition algorithms for spreading dose across 5-10 zones per kugel could be tested. Most

  10. Shield weight optimization using Monte Carlo transport calculations

    NASA Technical Reports Server (NTRS)

    Jordan, T. M.; Wohl, M. L.

    1972-01-01

    Outlines are given of the theory used in FASTER-3 Monte Carlo computer program for the transport of neutrons and gamma rays in complex geometries. The code has the additional capability of calculating the minimum weight layered unit shield configuration which will meet a specified dose rate constraint. It includes the treatment of geometric regions bounded by quadratic and quardric surfaces with multiple radiation sources which have a specified space, angle, and energy dependence. The program calculates, using importance sampling, the resulting number and energy fluxes at specified point, surface, and volume detectors. Results are presented for sample problems involving primary neutron and both primary and secondary photon transport in a spherical reactor shield configuration. These results include the optimization of the shield configuration.

  11. Monte Carlo Neutrino Transport in Core-Collapse Supernovae

    NASA Astrophysics Data System (ADS)

    Richers, Sherwood; Dolence, Joshua; Ott, Christian

    2017-01-01

    Neutrino interactions dominate the energetics of core-collapse supernovae (CCSNe) and determine the composition of the matter ejected from CCSNe and gamma-ray bursts (GRBs). Three dimensional (3D) CCSN and neutron star merger simulations are rapidly improving, but still suffer from approximate treatments of neutrino transport that cripple their reliability and realism. I use my relativistic time-independent Monte Carlo neutrino transport code SEDONU to evaluate the effectiveness of leakage, moment, and discrete ordinate schemes in the context of core-collapse supernovae. I also developed a relativistic extension to the Random Walk approximation that greatly accelerates convergence in diffusive regimes, making full-domain simulations possible. Blue Waters Graduate Fellowship.

  12. Efficient beta / gamma Monte Carlo transport in repetitive structures

    NASA Astrophysics Data System (ADS)

    Halbleib, J. A.; Scrivner, G. J.

    1993-12-01

    Algorithms are developed that permit the use of periodic and albedo boundary conditions in the ITS (Integrated TIGER Series) system of coupled electron/photon Monte Carlo transport codes when simulating transport in repetitive structures in satellite systems. Mutual verification is provided through the application of both algorithms to a simplified periodic geometry based on an array of microelectronics cards. The albedo algorithm is then used to benchmark the predictions of energy deposition in silicon by a mass sectoring code for this same application and to predict the shielding effectiveness of a hexagonal honeycomb structure. The use of these algorithms results in a major reduction in the required problem input and significant variance reduction that could otherwise be achieved only via postprocessing, which is much more problem dependent.

  13. Intercomparision of Monte Carlo Radiation Transport Codes MCNPX, GEANT4, and FLUKA for Simulating Proton Radiotherapy of the Eye

    PubMed Central

    Randeniya, S. D.; Taddei, P. J.; Newhauser, W. D.; Yepes, P.

    2010-01-01

    Monte Carlo simulations of an ocular treatment beam-line consisting of a nozzle and a water phantom were carried out using MCNPX, GEANT4, and FLUKA to compare the dosimetric accuracy and the simulation efficiency of the codes. Simulated central axis percent depth-dose profiles and cross-field dose profiles were compared with experimentally measured data for the comparison. Simulation speed was evaluated by comparing the number of proton histories simulated per second using each code. The results indicate that all the Monte Carlo transport codes calculate sufficiently accurate proton dose distributions in the eye and that the FLUKA transport code has the highest simulation efficiency. PMID:20865141

  14. TART97 a coupled neutron-photon 3-D, combinatorial geometry Monte Carlo transport code

    SciTech Connect

    Cullen, D.E.

    1997-11-22

    TART97 is a coupled neutron-photon, 3 Dimensional, combinatorial geometry, time dependent Monte Carlo transport code. This code can on any modern computer. It is a complete system to assist you with input preparation, running Monte Carlo calculations, and analysis of output results. TART97 is also incredibly FAST; if you have used similar codes, you will be amazed at how fast this code is compared to other similar codes. Use of the entire system can save you a great deal of time and energy. TART97 is distributed on CD. This CD contains on- line documentation for all codes included in the system, the codes configured to run on a variety of computers, and many example problems that you can use to familiarize yourself with the system. TART97 completely supersedes all older versions of TART, and it is strongly recommended that users only use the most recent version of TART97 and its data riles.

  15. NSLS-II Transport Line Progress

    SciTech Connect

    Fliller R. P.; Wahl, W.; Anderson, A.; Benish, B.; DeBoer, W.; Ganetis, G.; Heese, R.; Hseuh, H.-C.; Hu, J.-P.; Johanson, M.P.; Kosciuk, B.N.; Padrazo, D.; Roy, K.; Shaftan, T.; Singh, O.; Tuozzolo, J.; Wang, G.

    2012-05-20

    The National Synchrotron Light Source II (NSLS-II) is a state-of-the-art 3-GeV third generation light source currently under construction at Brookhaven National Laboratory. The NSLS-II injection system consists of a 200 MeV linac, a 3-GeV booster synchrotron and associated transfer lines. The first part of the Linac to Booster Transport (LBT) line has been installed for linac commissioning. This part includes all components necessary to commission the NSLS-II linac. The second part of this transport line is undergoing installation. Initial results of hardware commissioning will be discussed. The Booster to Storage Ring (BSR) transport line underwent a design review. The first part of the BSR transport line, consisting of all components necessary to commission the booster will be installed in 2012 for booster commissioning. We report on the final design of the BSR line along with the plan to commission the booster.

  16. Adaptive Multilevel Splitting for Monte Carlo particle transport

    NASA Astrophysics Data System (ADS)

    Louvin, Henri; Dumonteil, Eric; Lelièvre, Tony; Rousset, Mathias; Diop, Cheikh M.

    2017-09-01

    In the Monte Carlo simulation of particle transport, and especially for shielding applications, variance reduction techniques are widely used to help simulate realisations of rare events and reduce the relative errors on the estimated scores for a given computation time. Adaptive Multilevel Splitting is one of these variance reduction techniques that has recently appeared in the literature. In the present paper, we propose an alternative version of the AMS algortihm, adapted for the first time to the field of particle tranport. Within this context, it can be used to build an unbiased estimator of any quantity associated with particle tracks, such as flux, reaction rates or even non-Boltzmann tallies. Furthermore, the effciency of the AMS algorithm is shown not to be very sensitive to variations of its input parameters, which makes it capable of significant variance reduction without requiring extended user effort.

  17. bhlight: General Relativistic Radiation Magnetohydrodynamics with Monte Carlo Transport

    DOE PAGES

    Ryan, Benjamin R; Dolence, Joshua C.; Gammie, Charles F.

    2015-06-25

    We present bhlight, a numerical scheme for solving the equations of general relativistic radiation magnetohydrodynamics using a direct Monte Carlo solution of the frequency-dependent radiative transport equation. bhlight is designed to evolve black hole accretion flows at intermediate accretion rate, in the regime between the classical radiatively efficient disk and the radiatively inefficient accretion flow (RIAF), in which global radiative effects play a sub-dominant but non-negligible role in disk dynamics. We describe the governing equations, numerical method, idiosyncrasies of our implementation, and a suite of test and convergence results. We also describe example applications to radiative Bondi accretion and tomore » a slowly accreting Kerr black hole in axisymmetry.« less

  18. Acceleration of a Monte Carlo radiation transport code

    SciTech Connect

    Hochstedler, R.D.; Smith, L.M.

    1996-03-01

    Execution time for the Integrated TIGER Series (ITS) Monte Carlo radiation transport code has been reduced by careful re-coding of computationally intensive subroutines. Three test cases for the TIGER (1-D slab geometry), CYLTRAN (2-D cylindrical geometry), and ACCEPT (3-D arbitrary geometry) codes were identified and used to benchmark and profile program execution. Based upon these results, sixteen top time-consuming subroutines were examined and nine of them modified to accelerate computations with equivalent numerical output to the original. The results obtained via this study indicate that speedup factors of 1.90 for the TIGER code, 1.67 for the CYLTRAN code, and 1.11 for the ACCEPT code are achievable. {copyright} {ital 1996 American Institute of Physics.}

  19. Scoring methods for implicit Monte Carlo radiation transport

    SciTech Connect

    Edwards, A.L.

    1981-01-01

    Analytical and numerical tests were made of a number of possible methods for scoring the energy exchange between radiation and matter in the implicit Monte Carlo (IMC) radiation transport scheme of Fleck and Cummings. The interactions considered were effective absorption, elastic scattering, and Compton scattering. The scoring methods tested were limited to simple combinations of analogue, linear expected value, and exponential expected value scoring. Only two scoring methods were found that produced the same results as a pure analogue method. These are a combination of exponential expected value absorption and deposition and analogue Compton scattering of the particle, with either linear expected value Compton deposition or analogue Compton deposition. In both methods, the collision distance is based on the total scattering cross section.

  20. bhlight: General Relativistic Radiation Magnetohydrodynamics with Monte Carlo Transport

    SciTech Connect

    Ryan, Benjamin R; Dolence, Joshua C.; Gammie, Charles F.

    2015-06-25

    We present bhlight, a numerical scheme for solving the equations of general relativistic radiation magnetohydrodynamics using a direct Monte Carlo solution of the frequency-dependent radiative transport equation. bhlight is designed to evolve black hole accretion flows at intermediate accretion rate, in the regime between the classical radiatively efficient disk and the radiatively inefficient accretion flow (RIAF), in which global radiative effects play a sub-dominant but non-negligible role in disk dynamics. We describe the governing equations, numerical method, idiosyncrasies of our implementation, and a suite of test and convergence results. We also describe example applications to radiative Bondi accretion and to a slowly accreting Kerr black hole in axisymmetry.

  1. bhlight: GENERAL RELATIVISTIC RADIATION MAGNETOHYDRODYNAMICS WITH MONTE CARLO TRANSPORT

    SciTech Connect

    Ryan, B. R.; Gammie, C. F.; Dolence, J. C.

    2015-07-01

    We present bhlight, a numerical scheme for solving the equations of general relativistic radiation magnetohydrodynamics using a direct Monte Carlo solution of the frequency-dependent radiative transport equation. bhlight is designed to evolve black hole accretion flows at intermediate accretion rate, in the regime between the classical radiatively efficient disk and the radiatively inefficient accretion flow (RIAF), in which global radiative effects play a sub-dominant but non-negligible role in disk dynamics. We describe the governing equations, numerical method, idiosyncrasies of our implementation, and a suite of test and convergence results. We also describe example applications to radiative Bondi accretion and to a slowly accreting Kerr black hole in axisymmetry.

  2. Electron transport in magnetrons by a posteriori Monte Carlo simulations

    NASA Astrophysics Data System (ADS)

    Costin, C.; Minea, T. M.; Popa, G.

    2014-02-01

    Electron transport across magnetic barriers is crucial in all magnetized plasmas. It governs not only the plasma parameters in the volume, but also the fluxes of charged particles towards the electrodes and walls. It is particularly important in high-power impulse magnetron sputtering (HiPIMS) reactors, influencing the quality of the deposited thin films, since this type of discharge is characterized by an increased ionization fraction of the sputtered material. Transport coefficients of electron clouds released both from the cathode and from several locations in the discharge volume are calculated for a HiPIMS discharge with pre-ionization operated in argon at 0.67 Pa and for very short pulses (few µs) using the a posteriori Monte Carlo simulation technique. For this type of discharge electron transport is characterized by strong temporal and spatial dependence. Both drift velocity and diffusion coefficient depend on the releasing position of the electron cloud. They exhibit minimum values at the centre of the race-track for the secondary electrons released from the cathode. The diffusion coefficient of the same electrons increases from 2 to 4 times when the cathode voltage is doubled, in the first 1.5 µs of the pulse. These parameters are discussed with respect to empirical Bohm diffusion.

  3. Line Transport in Turbulent Atmospheres

    NASA Astrophysics Data System (ADS)

    Nikoghossian, A. G.

    2017-07-01

    The spectral line transfer in turbulent atmospheres with a spatially correlated velocity field is examined. Both the finite and semi-infinite media are treated. In finding the observed intensities we first deal with the problem for determining the mean intensity of radiation emerging from the medium for a fixed value of turbulent velocity at its boundary. A new approach proposed for solving this problem is based on the invariant imbedding technique which yields the solution of the proper problems for a family of media of different optical thicknesses and allows tackling different kinds of inhomogeneous problems. The dependence of the line profile, integral intensity, and the line width on the mean correlation length and the average value of the hydrodynamic velocity is studied. It is shown that the transition from a micro-turbulent regime to a macro-turbulence occurs within a comparatively narrow range of variation in the correlation length . Ambartsumian's principle of invariance is used to solve the problem of diffuse reflection of the line radiation from a one-dimensional semi-infinite turbulent atmosphere. In addition to the observed spectral line profile, statistical averages describing the diffusion process in the atmosphere (mean number of scattering events, average time spent by a diffusing photon in the medium) are determined. The dependence of these quantities on the average hydrodynamic velocity and correlation coefficient is studied.

  4. Parallelization of a Monte Carlo particle transport simulation code

    NASA Astrophysics Data System (ADS)

    Hadjidoukas, P.; Bousis, C.; Emfietzoglou, D.

    2010-05-01

    We have developed a high performance version of the Monte Carlo particle transport simulation code MC4. The original application code, developed in Visual Basic for Applications (VBA) for Microsoft Excel, was first rewritten in the C programming language for improving code portability. Several pseudo-random number generators have been also integrated and studied. The new MC4 version was then parallelized for shared and distributed-memory multiprocessor systems using the Message Passing Interface. Two parallel pseudo-random number generator libraries (SPRNG and DCMT) have been seamlessly integrated. The performance speedup of parallel MC4 has been studied on a variety of parallel computing architectures including an Intel Xeon server with 4 dual-core processors, a Sun cluster consisting of 16 nodes of 2 dual-core AMD Opteron processors and a 200 dual-processor HP cluster. For large problem size, which is limited only by the physical memory of the multiprocessor server, the speedup results are almost linear on all systems. We have validated the parallel implementation against the serial VBA and C implementations using the same random number generator. Our experimental results on the transport and energy loss of electrons in a water medium show that the serial and parallel codes are equivalent in accuracy. The present improvements allow for studying of higher particle energies with the use of more accurate physical models, and improve statistics as more particles tracks can be simulated in low response time.

  5. Phonon transport analysis of semiconductor nanocomposites using monte carlo simulations

    NASA Astrophysics Data System (ADS)

    Malladi, Mayank

    Nanocomposites are composite materials which incorporate nanosized particles, platelets or fibers. The addition of nanosized phases into the bulk matrix can lead to significantly different material properties compared to their macrocomposite counterparts. For nanocomposites, thermal conductivity is one of the most important physical properties. Manipulation and control of thermal conductivity in nanocomposites have impacted a variety of applications. In particular, it has been shown that the phonon thermal conductivity can be reduced significantly in nanocomposites due to the increase in phonon interface scattering while the electrical conductivity can be maintained. This extraordinary property of nanocomposites has been used to enhance the energy conversion efficiency of the thermoelectric devices which is proportional to the ratio of electrical to thermal conductivity. This thesis investigates phonon transport and thermal conductivity in Si/Ge semiconductor nanocomposites through numerical analysis. The Boltzmann transport equation (BTE) is adopted for description of phonon thermal transport in the nanocomposites. The BTE employs the particle-like nature of phonons to model heat transfer which accounts for both ballistic and diffusive transport phenomenon. Due to the implementation complexity and computational cost involved, the phonon BTE is difficult to solve in its most generic form. Gray media (frequency independent phonons) is often assumed in the numerical solution of BTE using conventional methods such as finite volume and discrete ordinates methods. This thesis solves the BTE using Monte Carlo (MC) simulation technique which is more convenient and efficient when non-gray media (frequency dependent phonons) is considered. In the MC simulation, phonons are displaced inside the computational domain under the various boundary conditions and scattering effects. In this work, under the relaxation time approximation, thermal transport in the nanocomposites are

  6. A Fano cavity test for Monte Carlo proton transport algorithms.

    PubMed

    Sterpin, Edmond; Sorriaux, Jefferson; Souris, Kevin; Vynckier, Stefaan; Bouchard, Hugo

    2014-01-01

    In the scope of reference dosimetry of radiotherapy beams, Monte Carlo (MC) simulations are widely used to compute ionization chamber dose response accurately. Uncertainties related to the transport algorithm can be verified performing self-consistency tests, i.e., the so-called "Fano cavity test." The Fano cavity test is based on the Fano theorem, which states that under charged particle equilibrium conditions, the charged particle fluence is independent of the mass density of the media as long as the cross-sections are uniform. Such tests have not been performed yet for MC codes simulating proton transport. The objectives of this study are to design a new Fano cavity test for proton MC and to implement the methodology in two MC codes: Geant4 and PENELOPE extended to protons (PENH). The new Fano test is designed to evaluate the accuracy of proton transport. Virtual particles with an energy of E0 and a mass macroscopic cross section of Σρ are transported, having the ability to generate protons with kinetic energy E0 and to be restored after each interaction, thus providing proton equilibrium. To perform the test, the authors use a simplified simulation model and rigorously demonstrate that the computed cavity dose per incident fluence must equal ΣE0ρ, as expected in classic Fano tests. The implementation of the test is performed in Geant4 and PENH. The geometry used for testing is a 10 × 10 cm(2) parallel virtual field and a cavity (2 × 2 × 0.2 cm(3) size) in a water phantom with dimensions large enough to ensure proton equilibrium. For conservative user-defined simulation parameters (leading to small step sizes), both Geant4 and PENH pass the Fano cavity test within 0.1%. However, differences of 0.6% and 0.7% were observed for PENH and Geant4, respectively, using larger step sizes. For PENH, the difference is attributed to the random-hinge method that introduces an artificial energy straggling if step size is not small enough. Using conservative user

  7. A generic algorithm for Monte Carlo simulation of proton transport

    NASA Astrophysics Data System (ADS)

    Salvat, Francesc

    2013-12-01

    A mixed (class II) algorithm for Monte Carlo simulation of the transport of protons, and other heavy charged particles, in matter is presented. The emphasis is on the electromagnetic interactions (elastic and inelastic collisions) which are simulated using strategies similar to those employed in the electron-photon code PENELOPE. Elastic collisions are described in terms of numerical differential cross sections (DCSs) in the center-of-mass frame, calculated from the eikonal approximation with the Dirac-Hartree-Fock-Slater atomic potential. The polar scattering angle is sampled by employing an adaptive numerical algorithm which allows control of interpolation errors. The energy transferred to the recoiling target atoms (nuclear stopping) is consistently described by transformation to the laboratory frame. Inelastic collisions are simulated from DCSs based on the plane-wave Born approximation (PWBA), making use of the Sternheimer-Liljequist model of the generalized oscillator strength, with parameters adjusted to reproduce (1) the electronic stopping power read from the input file, and (2) the total cross sections for impact ionization of inner subshells. The latter were calculated from the PWBA including screening and Coulomb corrections. This approach provides quite a realistic description of the energy-loss distribution in single collisions, and of the emission of X-rays induced by proton impact. The simulation algorithm can be readily modified to include nuclear reactions, when the corresponding cross sections and emission probabilities are available, and bremsstrahlung emission.

  8. Review of Monte Carlo modeling of light transport in tissues.

    PubMed

    Zhu, Caigang; Liu, Quan

    2013-05-01

    A general survey is provided on the capability of Monte Carlo (MC) modeling in tissue optics while paying special attention to the recent progress in the development of methods for speeding up MC simulations. The principles of MC modeling for the simulation of light transport in tissues, which includes the general procedure of tracking an individual photon packet, common light-tissue interactions that can be simulated, frequently used tissue models, common contact/noncontact illumination and detection setups, and the treatment of time-resolved and frequency-domain optical measurements, are briefly described to help interested readers achieve a quick start. Following that, a variety of methods for speeding up MC simulations, which includes scaling methods, perturbation methods, hybrid methods, variance reduction techniques, parallel computation, and special methods for fluorescence simulations, as well as their respective advantages and disadvantages are discussed. Then the applications of MC methods in tissue optics, laser Doppler flowmetry, photodynamic therapy, optical coherence tomography, and diffuse optical tomography are briefly surveyed. Finally, the potential directions for the future development of the MC method in tissue optics are discussed.

  9. A NEW MONTE CARLO METHOD FOR TIME-DEPENDENT NEUTRINO RADIATION TRANSPORT

    SciTech Connect

    Abdikamalov, Ernazar; Ott, Christian D.; O'Connor, Evan; Burrows, Adam; Dolence, Joshua C.; Loeffler, Frank; Schnetter, Erik

    2012-08-20

    Monte Carlo approaches to radiation transport have several attractive properties such as simplicity of implementation, high accuracy, and good parallel scaling. Moreover, Monte Carlo methods can handle complicated geometries and are relatively easy to extend to multiple spatial dimensions, which makes them potentially interesting in modeling complex multi-dimensional astrophysical phenomena such as core-collapse supernovae. The aim of this paper is to explore Monte Carlo methods for modeling neutrino transport in core-collapse supernovae. We generalize the Implicit Monte Carlo photon transport scheme of Fleck and Cummings and gray discrete-diffusion scheme of Densmore et al. to energy-, time-, and velocity-dependent neutrino transport. Using our 1D spherically-symmetric implementation, we show that, similar to the photon transport case, the implicit scheme enables significantly larger timesteps compared with explicit time discretization, without sacrificing accuracy, while the discrete-diffusion method leads to significant speed-ups at high optical depth. Our results suggest that a combination of spectral, velocity-dependent, Implicit Monte Carlo and discrete-diffusion Monte Carlo methods represents a robust approach for use in neutrino transport calculations in core-collapse supernovae. Our velocity-dependent scheme can easily be adapted to photon transport.

  10. Recommended direct simulation Monte Carlo collision model parameters for modeling ionized air transport processes

    NASA Astrophysics Data System (ADS)

    Swaminathan-Gopalan, Krishnan; Stephani, Kelly A.

    2016-02-01

    A systematic approach for calibrating the direct simulation Monte Carlo (DSMC) collision model parameters to achieve consistency in the transport processes is presented. The DSMC collision cross section model parameters are calibrated for high temperature atmospheric conditions by matching the collision integrals from DSMC against ab initio based collision integrals that are currently employed in the Langley Aerothermodynamic Upwind Relaxation Algorithm (LAURA) and Data Parallel Line Relaxation (DPLR) high temperature computational fluid dynamics solvers. The DSMC parameter values are computed for the widely used Variable Hard Sphere (VHS) and the Variable Soft Sphere (VSS) models using the collision-specific pairing approach. The recommended best-fit VHS/VSS parameter values are provided over a temperature range of 1000-20 000 K for a thirteen-species ionized air mixture. Use of the VSS model is necessary to achieve consistency in transport processes of ionized gases. The agreement of the VSS model transport properties with the transport properties as determined by the ab initio collision integral fits was found to be within 6% in the entire temperature range, regardless of the composition of the mixture. The recommended model parameter values can be readily applied to any gas mixture involving binary collisional interactions between the chemical species presented for the specified temperature range.

  11. Recommended direct simulation Monte Carlo collision model parameters for modeling ionized air transport processes

    SciTech Connect

    Swaminathan-Gopalan, Krishnan; Stephani, Kelly A.

    2016-02-15

    A systematic approach for calibrating the direct simulation Monte Carlo (DSMC) collision model parameters to achieve consistency in the transport processes is presented. The DSMC collision cross section model parameters are calibrated for high temperature atmospheric conditions by matching the collision integrals from DSMC against ab initio based collision integrals that are currently employed in the Langley Aerothermodynamic Upwind Relaxation Algorithm (LAURA) and Data Parallel Line Relaxation (DPLR) high temperature computational fluid dynamics solvers. The DSMC parameter values are computed for the widely used Variable Hard Sphere (VHS) and the Variable Soft Sphere (VSS) models using the collision-specific pairing approach. The recommended best-fit VHS/VSS parameter values are provided over a temperature range of 1000-20 000 K for a thirteen-species ionized air mixture. Use of the VSS model is necessary to achieve consistency in transport processes of ionized gases. The agreement of the VSS model transport properties with the transport properties as determined by the ab initio collision integral fits was found to be within 6% in the entire temperature range, regardless of the composition of the mixture. The recommended model parameter values can be readily applied to any gas mixture involving binary collisional interactions between the chemical species presented for the specified temperature range.

  12. BEAM TRANSPORT LINES FOR THE BSNS.

    SciTech Connect

    WEI, J.

    2006-06-26

    This paper presents the design of two beam transport lines at the BSNS: one is the injection line from the Linac to the RCS and the other is the target line from the RCS to the target station. In the injection beam line, space charge effects, transverse halo collimation, momentum tail collimation and debunching are the main concerned topics. A new method of using triplet cells and stripping foils is used to collimate transverse halo. A long straight section is reserved for the future upgrading linac and debuncher. In the target beam line, large halo emittance, beam stability at the target due to kicker failures and beam jitters, shielding of back-scattering neutrons from the target are main concerned topics. Special bi-gap magnets will be used to reduce beam losses in the collimators in front of the target.

  13. FZ2MC: A Tool for Monte Carlo Transport Code Geometry Manipulation

    SciTech Connect

    Hackel, B M; Nielsen Jr., D E; Procassini, R J

    2009-02-25

    The process of creating and validating combinatorial geometry representations of complex systems for use in Monte Carlo transport simulations can be both time consuming and error prone. To simplify this process, a tool has been developed which employs extensions of the Form-Z commercial solid modeling tool. The resultant FZ2MC (Form-Z to Monte Carlo) tool permits users to create, modify and validate Monte Carlo geometry and material composition input data. Plugin modules that export this data to an input file, as well as parse data from existing input files, have been developed for several Monte Carlo codes. The FZ2MC tool is envisioned as a 'universal' tool for the manipulation of Monte Carlo geometry and material data. To this end, collaboration on the development of plug-in modules for additional Monte Carlo codes is desired.

  14. Monte-Carlo Impurity transport simulations in the edge of the DIII-D tokamak using the MCI code

    SciTech Connect

    Evans, T.E.; Mahdavi, M.A.; Sager, G.T.; West, W.P.; Fenstermacher, M.E.; Meyer, W.H.; Porter, G.D.

    1995-07-01

    A Monte-Carlo Impurity (MCI) transport code is used to follow trace impurities through multiple ionization states in realistic 2-D tokamak geometries. The MCI code is used to study impurity transport along the open magnetic field lines of the Scrape-off Layer (SOL) and to understand how impurities get into the core from the SOL. An MCI study concentrating on the entrainment of carbon impurities ions by deuterium background plasma into the DIII-D divertor is discussed. MCI simulation results are compared to experimental DIII-D carbon measurements.

  15. Moisture Transport Through Sprayed Concrete Tunnel Linings

    NASA Astrophysics Data System (ADS)

    Holter, Karl Gunnar; Geving, Stig

    2016-01-01

    Waterproofing of permanent sprayed concrete tunnel linings with sprayed membranes in a continuous sandwich structure has been attempted since 2000 and has seen increased use in some countries. The main function of a sprayed membrane from a waterproofing perspective is to provide crack bridging and hence prevent flow of liquid water into the tunnel through cracks and imperfections in the concrete material. However, moisture can migrate through the concrete and EVA-based membrane materials by capillary and vapor diffusion mechanisms. These moisture transport mechanisms can have an influence on the degree of saturation, and may influence the pore pressures in the concrete material as well as risk of freeze-thaw damage of the concrete and membrane. The paper describes a detailed study of moisture transport material parameters, moisture condition in tunnel linings and climatic conditions tunnels in hard rock in Norway. These data have been included in a hygrothermal simulation model in the software WUFI for moisture transport to substantiate moisture transport and long-term effects on saturation of the concrete and membrane material. The findings suggest that EVA-based membranes exhibit significant water absorption and vapor transport properties although they are impermeable to liquid water flow. State-of-the-art sprayed concrete material applied with the wet mix method exhibits very low hydraulic conductivities, lower than 10-14 m/s, thus saturated conductive water flow is a very unlikely dominant transport mechanism. Moisture transport through the lining structure by capillary flow and vapor diffusion are calculated to approximately 3 cm3/m2 per day for lining thicknesses in the range of 25-35 cm and seasonal Nordic climate variations. The calculated moisture contents in the tunnel linings from the hygrothermal simulations are largely in agreement with the measured moisture contents in the tunnel linings. The findings also indicate that the concrete material exhibits

  16. Monte Carlo Studies of Nonlinear Electron Transport in III-V semiconductors

    DTIC Science & Technology

    1988-01-01

    ELECTRON TRANSPORT IN III-V SEMICONDUCTORS DTIC Ki Wook Kim EL, .4 .SEP2 3198 H UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAICIN Approved for Public Release... semiconductors , GaAs/AlGaAs materia * system, Nonequilibrium situations, Monte Carlo simulation method, Analysis of transport properties, Semiclassical...Boltzmar k. £8TRACT Contfinue on verse Inecesar. and ideneity by bloci, n,Mbr, transport picture. Electron transport in III-V semiconductors , especially the

  17. Experiences with different parallel programming paradigms for Monte Carlo particle transport leads to a portable toolkit for parallel Monte Carlo

    SciTech Connect

    Martin, W.R.; Majumdar, A. . Dept. of Nuclear Engineering); Rathkopf, J.A. ); Litvin, M. )

    1993-04-01

    Monte Carlo particle transport is easy to implement on massively parallel computers relative to other methods of transport simulation. This paper describes experiences of implementing a realistic demonstration Monte Carlo code on a variety of parallel architectures. Our pool of tasks'' technique, which allows reproducibility from run to run regardless of the number of processors, is discussed. We present detailed timing studies of simulations performed on the 128 processor BBN-ACI TC2000 and preliminary timing results for the 32 processor Kendall Square Research KSR-1. Given sufficient workload to distribute across many computational nodes, the BBN achieves nearly linear speedup for a large number of nodes. The KSR, with which we have had less experience, performs poorly with more than ten processors. A simple model incorporating known causes of overhead accurately predicts observed behavior. A general-purpose communication and control package to facilitate the implementation of existing Monte Carlo packages is described together with timings on the BBN. This package adds insignificantly to the computational costs of parallel simulations.

  18. Experiences with different parallel programming paradigms for Monte Carlo particle transport leads to a portable toolkit for parallel Monte Carlo

    SciTech Connect

    Martin, W.R.; Majumdar, A.; Rathkopf, J.A.; Litvin, M.

    1993-04-01

    Monte Carlo particle transport is easy to implement on massively parallel computers relative to other methods of transport simulation. This paper describes experiences of implementing a realistic demonstration Monte Carlo code on a variety of parallel architectures. Our ``pool of tasks`` technique, which allows reproducibility from run to run regardless of the number of processors, is discussed. We present detailed timing studies of simulations performed on the 128 processor BBN-ACI TC2000 and preliminary timing results for the 32 processor Kendall Square Research KSR-1. Given sufficient workload to distribute across many computational nodes, the BBN achieves nearly linear speedup for a large number of nodes. The KSR, with which we have had less experience, performs poorly with more than ten processors. A simple model incorporating known causes of overhead accurately predicts observed behavior. A general-purpose communication and control package to facilitate the implementation of existing Monte Carlo packages is described together with timings on the BBN. This package adds insignificantly to the computational costs of parallel simulations.

  19. Modeling the biophysical effects in a carbon beam delivery line by using Monte Carlo simulations

    NASA Astrophysics Data System (ADS)

    Cho, Ilsung; Yoo, SeungHoon; Cho, Sungho; Kim, Eun Ho; Song, Yongkeun; Shin, Jae-ik; Jung, Won-Gyun

    2016-09-01

    The Relative biological effectiveness (RBE) plays an important role in designing a uniform dose response for ion-beam therapy. In this study, the biological effectiveness of a carbon-ion beam delivery system was investigated using Monte Carlo simulations. A carbon-ion beam delivery line was designed for the Korea Heavy Ion Medical Accelerator (KHIMA) project. The GEANT4 simulation tool kit was used to simulate carbon-ion beam transport into media. An incident energy carbon-ion beam with energy in the range between 220 MeV/u and 290 MeV/u was chosen to generate secondary particles. The microdosimetric-kinetic (MK) model was applied to describe the RBE of 10% survival in human salivary-gland (HSG) cells. The RBE weighted dose was estimated as a function of the penetration depth in the water phantom along the incident beam's direction. A biologically photon-equivalent Spread Out Bragg Peak (SOBP) was designed using the RBE-weighted absorbed dose. Finally, the RBE of mixed beams was predicted as a function of the depth in the water phantom.

  20. Advantages of Analytical Transformations in Monte Carlo Methods for Radiation Transport

    SciTech Connect

    McKinley, M S; Brooks III, E D; Daffin, F

    2004-12-13

    Monte Carlo methods for radiation transport typically attempt to solve an integral by directly sampling analog or weighted particles, which are treated as physical entities. Improvements to the methods involve better sampling, probability games or physical intuition about the problem. We show that significant improvements can be achieved by recasting the equations with an analytical transform to solve for new, non-physical entities or fields. This paper looks at one such transform, the difference formulation for thermal photon transport, showing a significant advantage for Monte Carlo solution of the equations for time dependent transport. Other related areas are discussed that may also realize significant benefits from similar analytical transformations.

  1. Kernel density estimator methods for Monte Carlo radiation transport

    NASA Astrophysics Data System (ADS)

    Banerjee, Kaushik

    In this dissertation, the Kernel Density Estimator (KDE), a nonparametric probability density estimator, is studied and used to represent global Monte Carlo (MC) tallies. KDE is also employed to remove the singularities from two important Monte Carlo tallies, namely point detector and surface crossing flux tallies. Finally, KDE is also applied to accelerate the Monte Carlo fission source iteration for criticality problems. In the conventional MC calculation histograms are used to represent global tallies which divide the phase space into multiple bins. Partitioning the phase space into bins can add significant overhead to the MC simulation and the histogram provides only a first order approximation to the underlying distribution. The KDE method is attractive because it can estimate MC tallies in any location within the required domain without any particular bin structure. Post-processing of the KDE tallies is sufficient to extract detailed, higher order tally information for an arbitrary grid. The quantitative and numerical convergence properties of KDE tallies are also investigated and they are shown to be superior to conventional histograms as well as the functional expansion tally developed by Griesheimer. Monte Carlo point detector and surface crossing flux tallies are two widely used tallies but they suffer from an unbounded variance. As a result, the central limit theorem can not be used for these tallies to estimate confidence intervals. By construction, KDE tallies can be directly used to estimate flux at a point but the variance of this point estimate does not converge as 1/N, which is not unexpected for a point quantity. However, an improved approach is to modify both point detector and surface crossing flux tallies directly by using KDE within a variance reduction approach by taking advantage of the fact that KDE estimates the underlying probability density function. This methodology is demonstrated by several numerical examples and demonstrates that

  2. Radiation protection considerations along a radioactive ion beam transport line

    NASA Astrophysics Data System (ADS)

    Sarchiapone, Lucia; Zafiropoulos, Demetre

    2016-09-01

    The goal of the SPES project is to produce accelerated radioactive ion beams for Physics studies at “Laboratori Nazionali di Legnaro” (INFN, Italy). This accelerator complex is scheduled to be built by 2016 for an effective operation in 2017. Radioactive species are produced in a uranium carbide target, by the interaction of 200 μA of protons at 40 MeV. All of the ionized species in the 1+ state come out of the target (ISOL method), and pass through a Wien filter for a first selection and an HMRS (high mass resolution spectrometer). Then they are transported by an electrostatic beam line toward a charge state breeder (where the 1+ to n+ multi-ionization takes place) before selection and reacceleration at the already existing superconducting linac. The work concerning dose evaluations, activation calculation, and radiation protection constraints related to the transport of the radioactive ion beam (RIB) from the target to the mass separator will be described in this paper. The FLUKA code has been used as tool for those calculations needing Monte Carlo simulations, in particular for the evaluation of the dose rate due to the presence of the radioactive beam in the selection/interaction points. The time evolution of a radionuclide inventory can be computed online with FLUKA for arbitrary irradiation profiles and decay times. The activity evolution is analytically evaluated through the implementation of the Bateman equations. Furthermore, the generation and transport of decay radiation (limited to gamma, beta- and beta+ emissions) is possible, referring to a dedicated database of decay emissions using mostly information obtained from NNDC, sometimes supplemented with other data and checked for consistency. When the use of Monte Carlo simulations was not feasible, the Bateman equations, or possible simplifications, have been used directly.

  3. Monte Carlo modelling of positron transport in real world applications

    NASA Astrophysics Data System (ADS)

    Marjanović, S.; Banković, A.; Šuvakov, M.; Petrović, Z. Lj

    2014-05-01

    Due to the unstable nature of positrons and their short lifetime, it is difficult to obtain high positron particle densities. This is why the Monte Carlo simulation technique, as a swarm method, is very suitable for modelling most of the current positron applications involving gaseous and liquid media. The ongoing work on the measurements of cross-sections for positron interactions with atoms and molecules and swarm calculations for positrons in gasses led to the establishment of good cross-section sets for positron interaction with gasses commonly used in real-world applications. Using the standard Monte Carlo technique and codes that can follow both low- (down to thermal energy) and high- (up to keV) energy particles, we are able to model different systems directly applicable to existing experimental setups and techniques. This paper reviews the results on modelling Surko-type positron buffer gas traps, application of the rotating wall technique and simulation of positron tracks in water vapor as a substitute for human tissue, and pinpoints the challenges in and advantages of applying Monte Carlo simulations to these systems.

  4. PyMercury: Interactive Python for the Mercury Monte Carlo Particle Transport Code

    SciTech Connect

    Iandola, F N; O'Brien, M J; Procassini, R J

    2010-11-29

    Monte Carlo particle transport applications are often written in low-level languages (C/C++) for optimal performance on clusters and supercomputers. However, this development approach often sacrifices straightforward usability and testing in the interest of fast application performance. To improve usability, some high-performance computing applications employ mixed-language programming with high-level and low-level languages. In this study, we consider the benefits of incorporating an interactive Python interface into a Monte Carlo application. With PyMercury, a new Python extension to the Mercury general-purpose Monte Carlo particle transport code, we improve application usability without diminishing performance. In two case studies, we illustrate how PyMercury improves usability and simplifies testing and validation in a Monte Carlo application. In short, PyMercury demonstrates the value of interactive Python for Monte Carlo particle transport applications. In the future, we expect interactive Python to play an increasingly significant role in Monte Carlo usage and testing.

  5. SU-E-T-558: Monte Carlo Photon Transport Simulations On GPU with Quadric Geometry

    SciTech Connect

    Chi, Y; Tian, Z; Jiang, S; Jia, X

    2015-06-15

    Purpose: Monte Carlo simulation on GPU has experienced rapid advancements over the past a few years and tremendous accelerations have been achieved. Yet existing packages were developed only in voxelized geometry. In some applications, e.g. radioactive seed modeling, simulations in more complicated geometry are needed. This abstract reports our initial efforts towards developing a quadric geometry module aiming at expanding the application scope of GPU-based MC simulations. Methods: We defined the simulation geometry consisting of a number of homogeneous bodies, each specified by its material composition and limiting surfaces characterized by quadric functions. A tree data structure was utilized to define geometric relationship between different bodies. We modified our GPU-based photon MC transport package to incorporate this geometry. Specifically, geometry parameters were loaded into GPU’s shared memory for fast access. Geometry functions were rewritten to enable the identification of the body that contains the current particle location via a fast searching algorithm based on the tree data structure. Results: We tested our package in an example problem of HDR-brachytherapy dose calculation for shielded cylinder. The dose under the quadric geometry and that under the voxelized geometry agreed in 94.2% of total voxels within 20% isodose line based on a statistical t-test (95% confidence level), where the reference dose was defined to be the one at 0.5cm away from the cylinder surface. It took 243sec to transport 100million source photons under this quadric geometry on an NVidia Titan GPU card. Compared with simulation time of 99.6sec in the voxelized geometry, including quadric geometry reduced efficiency due to the complicated geometry-related computations. Conclusion: Our GPU-based MC package has been extended to support photon transport simulation in quadric geometry. Satisfactory accuracy was observed with a reduced efficiency. Developments for charged

  6. Calculation of radiation therapy dose using all particle Monte Carlo transport

    DOEpatents

    Chandler, W.P.; Hartmann-Siantar, C.L.; Rathkopf, J.A.

    1999-02-09

    The actual radiation dose absorbed in the body is calculated using three-dimensional Monte Carlo transport. Neutrons, protons, deuterons, tritons, helium-3, alpha particles, photons, electrons, and positrons are transported in a completely coupled manner, using this Monte Carlo All-Particle Method (MCAPM). The major elements of the invention include: computer hardware, user description of the patient, description of the radiation source, physical databases, Monte Carlo transport, and output of dose distributions. This facilitated the estimation of dose distributions on a Cartesian grid for neutrons, photons, electrons, positrons, and heavy charged-particles incident on any biological target, with resolutions ranging from microns to centimeters. Calculations can be extended to estimate dose distributions on general-geometry (non-Cartesian) grids for biological and/or non-biological media. 57 figs.

  7. Calculation of radiation therapy dose using all particle Monte Carlo transport

    DOEpatents

    Chandler, William P.; Hartmann-Siantar, Christine L.; Rathkopf, James A.

    1999-01-01

    The actual radiation dose absorbed in the body is calculated using three-dimensional Monte Carlo transport. Neutrons, protons, deuterons, tritons, helium-3, alpha particles, photons, electrons, and positrons are transported in a completely coupled manner, using this Monte Carlo All-Particle Method (MCAPM). The major elements of the invention include: computer hardware, user description of the patient, description of the radiation source, physical databases, Monte Carlo transport, and output of dose distributions. This facilitated the estimation of dose distributions on a Cartesian grid for neutrons, photons, electrons, positrons, and heavy charged-particles incident on any biological target, with resolutions ranging from microns to centimeters. Calculations can be extended to estimate dose distributions on general-geometry (non-Cartesian) grids for biological and/or non-biological media.

  8. A fully coupled Monte Carlo/discrete ordinates solution to the neutron transport equation. Final report

    SciTech Connect

    Filippone, W.L.; Baker, R.S.

    1990-12-31

    The neutron transport equation is solved by a hybrid method that iteratively couples regions where deterministic (S{sub N}) and stochastic (Monte Carlo) methods are applied. Unlike previous hybrid methods, the Monte Carlo and S{sub N} regions are fully coupled in the sense that no assumption is made about geometrical separation or decoupling. The hybrid method provides a new means of solving problems involving both optically thick and optically thin regions that neither Monte Carlo nor S{sub N} is well suited for by themselves. The fully coupled Monte Carlo/S{sub N} technique consists of defining spatial and/or energy regions of a problem in which either a Monte Carlo calculation or an S{sub N} calculation is to be performed. The Monte Carlo region may comprise the entire spatial region for selected energy groups, or may consist of a rectangular area that is either completely or partially embedded in an arbitrary S{sub N} region. The Monte Carlo and S{sub N} regions are then connected through the common angular boundary fluxes, which are determined iteratively using the response matrix technique, and volumetric sources. The hybrid method has been implemented in the S{sub N} code TWODANT by adding special-purpose Monte Carlo subroutines to calculate the response matrices and volumetric sources, and linkage subrountines to carry out the interface flux iterations. The common angular boundary fluxes are included in the S{sub N} code as interior boundary sources, leaving the logic for the solution of the transport flux unchanged, while, with minor modifications, the diffusion synthetic accelerator remains effective in accelerating S{sub N} calculations. The special-purpose Monte Carlo routines used are essentially analog, with few variance reduction techniques employed. However, the routines have been successfully vectorized, with approximately a factor of five increase in speed over the non-vectorized version.

  9. TART 2000: A Coupled Neutron-Photon, 3-D, Combinatorial Geometry, Time Dependent, Monte Carlo Transport Code

    SciTech Connect

    Cullen, D.E

    2000-11-22

    TART2000 is a coupled neutron-photon, 3 Dimensional, combinatorial geometry, time dependent Monte Carlo radiation transport code. This code can run on any modern computer. It is a complete system to assist you with input Preparation, running Monte Carlo calculations, and analysis of output results. TART2000 is also incredibly FAST; if you have used similar codes, you will be amazed at how fast this code is compared to other similar codes. Use of the entire system can save you a great deal of time and energy. TART2000 is distributed on CD. This CD contains on-line documentation for all codes included in the system, the codes configured to run on a variety of computers, and many example problems that you can use to familiarize yourself with the system. TART2000 completely supersedes all older versions of TART, and it is strongly recommended that users only use the most recent version of TART2000 and its data files.

  10. TART98 a coupled neutron-photon 3-D, combinatorial geometry time dependent Monte Carlo Transport code

    SciTech Connect

    Cullen, D E

    1998-11-22

    TART98 is a coupled neutron-photon, 3 Dimensional, combinatorial geometry, time dependent Monte Carlo radiation transport code. This code can run on any modern computer. It is a complete system to assist you with input preparation, running Monte Carlo calculations, and analysis of output results. TART98 is also incredibly FAST; if you have used similar codes, you will be amazed at how fast this code is compared to other similar codes. Use of the entire system can save you a great deal of time and energy. TART98 is distributed on CD. This CD contains on-line documentation for all codes included in the system, the codes configured to run on a variety of computers, and many example problems that you can use to familiarize yourself with the system. TART98 completely supersedes all older versions of TART, and it is strongly recommended that users only use the most recent version of TART98 and its data files.

  11. Accelerator and transport line survey and alignment

    SciTech Connect

    Ruland, R.E.

    1991-10-01

    This paper summarizes the survey and alignment processes of accelerators and transport lines and discusses the propagation of errors associated with these processes. The major geodetic principles governing the survey and alignment measurement space are introduced and their relationship to a lattice coordinate system shown. The paper continues with a broad overview about the activities involved in the step sequence from initial absolute alignment to final smoothing. Emphasis is given to the relative alignment of components, in particular to the importance of incorporating methods to remove residual systematic effects in surveying and alignment operations. Various approaches to smoothing used at major laboratories are discussed. 47 refs., 19 figs., 1 tab.

  12. Comparison of space radiation calculations for deterministic and Monte Carlo transport codes

    NASA Astrophysics Data System (ADS)

    Lin, Zi-Wei; Adams, James; Barghouty, Abdulnasser; Randeniya, Sharmalee; Tripathi, Ram; Watts, John; Yepes, Pablo

    For space radiation protection of astronauts or electronic equipments, it is necessary to develop and use accurate radiation transport codes. Radiation transport codes include deterministic codes, such as HZETRN from NASA and UPROP from the Naval Research Laboratory, and Monte Carlo codes such as FLUKA, the Geant4 toolkit and HETC-HEDS. The deterministic codes and Monte Carlo codes complement each other in that deterministic codes are very fast while Monte Carlo codes are more elaborate. Therefore it is important to investigate how well the results of deterministic codes compare with those of Monte Carlo transport codes and where they differ. In this study we evaluate these different codes in their space radiation applications by comparing their output results in the same given space radiation environments, shielding geometry and material. Typical space radiation environments such as the 1977 solar minimum galactic cosmic ray environment are used as the well-defined input, and simple geometries made of aluminum, water and/or polyethylene are used to represent the shielding material. We then compare various outputs of these codes, such as the dose-depth curves and the flux spectra of different fragments and other secondary particles. These comparisons enable us to learn more about the main differences between these space radiation transport codes. At the same time, they help us to learn the qualitative and quantitative features that these transport codes have in common.

  13. Macro-step Monte Carlo Methods and their Applications in Proton Radiotherapy and Optical Photon Transport

    NASA Astrophysics Data System (ADS)

    Jacqmin, Dustin J.

    Monte Carlo modeling of radiation transport is considered the gold standard for radiotherapy dose calculations. However, highly accurate Monte Carlo calculations are very time consuming and the use of Monte Carlo dose calculation methods is often not practical in clinical settings. With this in mind, a variation on the Monte Carlo method called macro Monte Carlo (MMC) was developed in the 1990's for electron beam radiotherapy dose calculations. To accelerate the simulation process, the electron MMC method used larger steps-sizes in regions of the simulation geometry where the size of the region was large relative to the size of a typical Monte Carlo step. These large steps were pre-computed using conventional Monte Carlo simulations and stored in a database featuring many step-sizes and materials. The database was loaded into memory by a custom electron MMC code and used to transport electrons quickly through a heterogeneous absorbing geometry. The purpose of this thesis work was to apply the same techniques to proton radiotherapy dose calculation and light propagation Monte Carlo simulations. First, the MMC method was implemented for proton radiotherapy dose calculations. A database composed of pre-computed steps was created using MCNPX for many materials and beam energies. The database was used by a custom proton MMC code called PMMC to transport protons through a heterogeneous absorbing geometry. The PMMC code was tested against MCNPX for a number of different proton beam energies and geometries and proved to be accurate and much more efficient. The MMC method was also implemented for light propagation Monte Carlo simulations. The widely accepted Monte Carlo for multilayered media (MCML) was modified to incorporate the MMC method. The original MCML uses basic scattering and absorption physics to transport optical photons through multilayered geometries. The MMC version of MCML was tested against the original MCML code using a number of different geometries and

  14. A Hybrid Method for Evaluating of Lightning Performance of Overhead Lines based on Monte Carlo Procedure

    NASA Astrophysics Data System (ADS)

    Shariatinasab, Reza; Tadayon, Pooya; Ametani, Akihiro

    2016-07-01

    This paper proposes a hybrid method for calculating lightning performance of overhead lines caused by direct strokes by combining Lattice diagram together with the Monte Carlo method. In order to go through this, firstly, the proper analytical relations for overvoltages calculation are established based on Lattice diagram. Then, the Monte Carlo procedure is applied to the obtained analytical relations. The aim of the presented method that will be called `ML method' is simply estimation of the lightning performance of the overhead lines and performing the risk analysis of power apparatus with retaining the acceptable accuracy. To confirm the accuracy, the calculated results of the presented ML method are compared with those calculated by the EMTP/ATP simulation.

  15. Applications of the COG multiparticle Monte Carlo transport code to simulated imaging of complex objects

    SciTech Connect

    Buck, R M; Hall, J M

    1999-06-01

    COG is a major multiparticle simulation code in the LLNL Monte Carlo radiation transport toolkit. It was designed to solve deep-penetration radiation shielding problems in arbitrarily complex 3D geometries, involving coupled transport of photons, neutrons, and electrons. COG was written to provide as much accuracy as the underlying cross-sections will allow, and has a number of variance-reduction features to speed computations. Recently COG has been applied to the simulation of high- resolution radiographs of complex objects and the evaluation of contraband detection schemes. In this paper we will give a brief description of the capabilities of the COG transport code and show several examples of neutron and gamma-ray imaging simulations. Keywords: Monte Carlo, radiation transport, simulated radiography, nonintrusive inspection, neutron imaging.

  16. Using Nuclear Theory, Data and Uncertainties in Monte Carlo Transport Applications

    SciTech Connect

    Rising, Michael Evan

    2015-11-03

    These are slides for a presentation on using nuclear theory, data and uncertainties in Monte Carlo transport applications. The following topics are covered: nuclear data (experimental data versus theoretical models, data evaluation and uncertainty quantification), fission multiplicity models (fixed source applications, criticality calculations), uncertainties and their impact (integral quantities, sensitivity analysis, uncertainty propagation).

  17. Time series analysis of Monte Carlo neutron transport calculations

    NASA Astrophysics Data System (ADS)

    Nease, Brian Robert

    A time series based approach is applied to the Monte Carlo (MC) fission source distribution to calculate the non-fundamental mode eigenvalues of the system. The approach applies Principal Oscillation Patterns (POPs) to the fission source distribution, transforming the problem into a simple autoregressive order one (AR(1)) process. Proof is provided that the stationary MC process is linear to first order approximation, which is a requirement for the application of POPs. The autocorrelation coefficient of the resulting AR(1) process corresponds to the ratio of the desired mode eigenvalue to the fundamental mode eigenvalue. All modern k-eigenvalue MC codes calculate the fundamental mode eigenvalue, so the desired mode eigenvalue can be easily determined. The strength of this approach is contrasted against the Fission Matrix method (FMM) in terms of accuracy versus computer memory constraints. Multi-dimensional problems are considered since the approach has strong potential for use in reactor analysis, and the implementation of the method into production codes is discussed. Lastly, the appearance of complex eigenvalues is investigated and solutions are provided.

  18. Monte Carlo path sampling approach to modeling aeolian sediment transport

    NASA Astrophysics Data System (ADS)

    Hardin, E. J.; Mitasova, H.; Mitas, L.

    2011-12-01

    Coastal communities and vital infrastructure are subject to coastal hazards including storm surge and hurricanes. Coastal dunes offer protection by acting as natural barriers from waves and storm surge. During storms, these landforms and their protective function can erode; however, they can also erode even in the absence of storms due to daily wind and waves. Costly and often controversial beach nourishment and coastal construction projects are common erosion mitigation practices. With a more complete understanding of coastal morphology, the efficacy and consequences of anthropogenic activities could be better predicted. Currently, the research on coastal landscape evolution is focused on waves and storm surge, while only limited effort is devoted to understanding aeolian forces. Aeolian transport occurs when the wind supplies a shear stress that exceeds a critical value, consequently ejecting sand grains into the air. If the grains are too heavy to be suspended, they fall back to the grain bed where the collision ejects more grains. This is called saltation and is the salient process by which sand mass is transported. The shear stress required to dislodge grains is related to turbulent air speed. Subsequently, as sand mass is injected into the air, the wind loses speed along with its ability to eject more grains. In this way, the flux of saltating grains is itself influenced by the flux of saltating grains and aeolian transport becomes nonlinear. Aeolian sediment transport is difficult to study experimentally for reasons arising from the orders of magnitude difference between grain size and dune size. It is difficult to study theoretically because aeolian transport is highly nonlinear especially over complex landscapes. Current computational approaches have limitations as well; single grain models are mathematically simple but are computationally intractable even with modern computing power whereas cellular automota-based approaches are computationally efficient

  19. Monte Carlo method for calculating oxygen abundances and their uncertainties from strong-line flux measurements

    NASA Astrophysics Data System (ADS)

    Bianco, F. B.; Modjaz, M.; Oh, S. M.; Fierroz, D.; Liu, Y. Q.; Kewley, L.; Graur, O.

    2016-07-01

    We present the open-source Python code pyMCZ that determines oxygen abundance and its distribution from strong emission lines in the standard metallicity calibrators, based on the original IDL code of Kewley and Dopita (2002) with updates from Kewley and Ellison (2008), and expanded to include more recently developed calibrators. The standard strong-line diagnostics have been used to estimate the oxygen abundance in the interstellar medium through various emission line ratios (referred to as indicators) in many areas of astrophysics, including galaxy evolution and supernova host galaxy studies. We introduce a Python implementation of these methods that, through Monte Carlo sampling, better characterizes the statistical oxygen abundance confidence region including the effect due to the propagation of observational uncertainties. These uncertainties are likely to dominate the error budget in the case of distant galaxies, hosts of cosmic explosions. Given line flux measurements and their uncertainties, our code produces synthetic distributions for the oxygen abundance in up to 15 metallicity calibrators simultaneously, as well as for E(B- V) , and estimates their median values and their 68% confidence regions. We provide the option of outputting the full Monte Carlo distributions, and their Kernel Density estimates. We test our code on emission line measurements from a sample of nearby supernova host galaxies (z < 0.15) and compare our metallicity results with those from previous methods. We show that our metallicity estimates are consistent with previous methods but yield smaller statistical uncertainties. It should be noted that systematic uncertainties are not taken into account. We also offer visualization tools to assess the spread of the oxygen abundance in the different calibrators, as well as the shape of the estimated oxygen abundance distribution in each calibrator, and develop robust metrics for determining the appropriate Monte Carlo sample size. The code

  20. Monte Carlo simulation of time-dependent, transport-limited fluorescent boundary measurements in frequency domain.

    PubMed

    Pan, Tianshu; Rasmussen, John C; Lee, Jae Hoon; Sevick-Muraca, Eva M

    2007-04-01

    Recently, we have presented and experimentally validated a unique numerical solver of the coupled radiative transfer equations (RTEs) for rapidly computing time-dependent excitation and fluorescent light propagation in small animal tomography. Herein, we present a time-dependent Monte Carlo algorithm to validate the forward RTE solver and investigate the impact of physical parameters upon transport-limited measurements in order to best direct the development of the RTE solver for optical tomography. Experimentally, the Monte Carlo simulations for both transport-limited and diffusion-limited propagations are validated using frequency domain photon migration measurements for 1.0%, 0.5%, and 0.2% intralipid solutions containing 1 microM indocyanine green in a 49 cm3 cylindrical phantom corresponding to the small volume employed in small animal tomography. The comparisons between Monte Carlo simulations and the numerical solutions result in mean percent error in amplitude and the phase shift less than 5.0% and 0.7 degrees, respectively, at excitation and emission wavelengths for varying anisotropic factors, lifetimes, and modulation frequencies. Monte Carlo simulations indicate that the accuracy of the forward model is enhanced using (i) suitable source models of photon delivery, (ii) accurate anisotropic factors, and (iii) accurate acceptance angles of collected photons. Monte Carlo simulations also show that the accuracy of the diffusion approximation in the small phantom depends upon (i) the ratio d(phantom)/l(tr), where d(phantom) is the phantom diameter and l(tr) is the transport mean free path; and (ii) the anisotropic factor of the medium. The Monte Carlo simulations validates and guides the future development of an appropriate RTE solver for deployment in small animal optical tomography.

  1. a Study of Electron Transport in Small Semiconductor Devices: the Monte Carlo Trajectory Integral Method

    NASA Astrophysics Data System (ADS)

    Socha, John Bronn

    The first part of this thesis contains a historical perspective on the last five years of research in hot-electron transport in semiconductors. This perspective serves two purposes. First, it provides a motivation for the second part of this thesis, which deals with calculating the full velocity distribution function of hot electrons. And second, it points out many of the unsolved theoretical problems that might be solved with the techniques developed in the second part. The second part of this thesis contains a derivation of a new method for calculating velocity distribution functions. This method, the Monte Carlo trajectory integral, is well suited for calculating the time evolution of a distribution function in the presence of complicated scattering mechanisms, like scattering with acoustic and optical phonons, inter-valley scattering, Bragg reflections, and even electron-electron scattering. This method uses many of the techniques develped for Monte Carlo transport calculations, but unlike other Monte Carlo methods, the Monte Carlo trajectory integral has very good control over the variance of the calculated distribution function across the entire distribution function. Since the Monte Carlo trajectory integral only needs information on the distribution function at previous times, it is well suited to electron-electron scattering where the distribution function must be known before the scattering rate can be calculated. Finally, this thesis ends with an application of the Monte Carlo trajectory integral to electron transport in SiO(,2) in the presence of electric fields up to 12 MV/cm, and it includes a number of suggestions for applying the Monte Carlo trajectory integral to other experiments in both SiO(,2) and GaAs. The Monte Carlo trajectory integral should be of special interest when super-computers are more common since then there will be the computing resources to include electron-electron scattering. The high-field distribution functions calculated when

  2. A hybrid (Monte Carlo/deterministic) approach for multi-dimensional radiation transport

    SciTech Connect

    Bal, Guillaume; Davis, Anthony B.; Langmore, Ian

    2011-08-20

    Highlights: {yields} We introduce a variance reduction scheme for Monte Carlo (MC) transport. {yields} The primary application is atmospheric remote sensing. {yields} The technique first solves the adjoint problem using a deterministic solver. {yields} Next, the adjoint solution is used as an importance function for the MC solver. {yields} The adjoint problem is solved quickly since it ignores the volume. - Abstract: A novel hybrid Monte Carlo transport scheme is demonstrated in a scene with solar illumination, scattering and absorbing 2D atmosphere, a textured reflecting mountain, and a small detector located in the sky (mounted on a satellite or a airplane). It uses a deterministic approximation of an adjoint transport solution to reduce variance, computed quickly by ignoring atmospheric interactions. This allows significant variance and computational cost reductions when the atmospheric scattering and absorption coefficient are small. When combined with an atmospheric photon-redirection scheme, significant variance reduction (equivalently acceleration) is achieved in the presence of atmospheric interactions.

  3. Lorentz force correction to the Boltzmann radiation transport equation and its implications for Monte Carlo algorithms.

    PubMed

    Bouchard, Hugo; Bielajew, Alex

    2015-07-07

    To establish a theoretical framework for generalizing Monte Carlo transport algorithms by adding external electromagnetic fields to the Boltzmann radiation transport equation in a rigorous and consistent fashion. Using first principles, the Boltzmann radiation transport equation is modified by adding a term describing the variation of the particle distribution due to the Lorentz force. The implications of this new equation are evaluated by investigating the validity of Fano's theorem. Additionally, Lewis' approach to multiple scattering theory in infinite homogeneous media is redefined to account for the presence of external electromagnetic fields. The equation is modified and yields a description consistent with the deterministic laws of motion as well as probabilistic methods of solution. The time-independent Boltzmann radiation transport equation is generalized to account for the electromagnetic forces in an additional operator similar to the interaction term. Fano's and Lewis' approaches are stated in this new equation. Fano's theorem is found not to apply in the presence of electromagnetic fields. Lewis' theory for electron multiple scattering and moments, accounting for the coupling between the Lorentz force and multiple elastic scattering, is found. However, further investigation is required to develop useful algorithms for Monte Carlo and deterministic transport methods. To test the accuracy of Monte Carlo transport algorithms in the presence of electromagnetic fields, the Fano cavity test, as currently defined, cannot be applied. Therefore, new tests must be designed for this specific application. A multiple scattering theory that accurately couples the Lorentz force with elastic scattering could improve Monte Carlo efficiency. The present study proposes a new theoretical framework to develop such algorithms.

  4. High-resolution Monte Carlo simulation of flow and conservative transport in heterogeneous porous media 2. Transport results

    USGS Publications Warehouse

    Naff, R.L.; Haley, D.F.; Sudicky, E.A.

    1998-01-01

    In this, the second of two papers concerned with the use of numerical simulation to examine flow and transport parameters in heterogeneous porous media via Monte Carlo methods, results from the transport aspect of these simulations are reported on. Transport simulations contained herein assume a finite pulse input of conservative tracer, and the numerical technique endeavors to realistically simulate tracer spreading as the cloud moves through a heterogeneous medium. Medium heterogeneity is limited to the hydraulic conductivity field, and generation of this field assumes that the hydraulic- conductivity process is second-order stationary. Methods of estimating cloud moments, and the interpretation of these moments, are discussed. Techniques for estimation of large-time macrodispersivities from cloud second-moment data, and for the approximation of the standard errors associated with these macrodispersivities, are also presented. These moment and macrodispersivity estimation techniques were applied to tracer clouds resulting from transport scenarios generated by specific Monte Carlo simulations. Where feasible, moments and macrodispersivities resulting from the Monte Carlo simulations are compared with first- and second-order perturbation analyses. Some limited results concerning the possible ergodic nature of these simulations, and the presence of non- Gaussian behavior of the mean cloud, are reported on as well.

  5. The Monte Carlo approach to transport modeling in deca-nanometer MOSFETs

    NASA Astrophysics Data System (ADS)

    Sangiorgi, Enrico; Palestri, Pierpaolo; Esseni, David; Fiegna, Claudio; Selmi, Luca

    2008-09-01

    In this paper, we review recent developments of the Monte Carlo approach to the simulation of semi-classical carrier transport in nano-MOSFETs, with particular focus on the inclusion of quantum-mechanical effects in the simulation (using either the multi-subband approach or quantum corrections to the electrostatic potential) and on the numerical stability issues related to the coupling of the transport with the Poisson equation. Selected applications are presented, including the analysis of quasi-ballistic transport, the determination of the RF characteristics of deca-nanometric MOSFETs, and the study of non-conventional device structures and channel materials.

  6. Data decomposition of Monte Carlo particle transport simulations via tally servers

    SciTech Connect

    Romano, Paul K.; Siegel, Andrew R.; Forget, Benoit; Smith, Kord

    2013-11-01

    An algorithm for decomposing large tally data in Monte Carlo particle transport simulations is developed, analyzed, and implemented in a continuous-energy Monte Carlo code, OpenMC. The algorithm is based on a non-overlapping decomposition of compute nodes into tracking processors and tally servers. The former are used to simulate the movement of particles through the domain while the latter continuously receive and update tally data. A performance model for this approach is developed, suggesting that, for a range of parameters relevant to LWR analysis, the tally server algorithm should perform with minimal overhead on contemporary supercomputers. An implementation of the algorithm in OpenMC is then tested on the Intrepid and Titan supercomputers, supporting the key predictions of the model over a wide range of parameters. We thus conclude that the tally server algorithm is a successful approach to circumventing classical on-node memory constraints en route to unprecedentedly detailed Monte Carlo reactor simulations.

  7. A Novel Implementation of Massively Parallel Three Dimensional Monte Carlo Radiation Transport

    NASA Astrophysics Data System (ADS)

    Robinson, P. B.; Peterson, J. D. L.

    2005-12-01

    The goal of our summer project was to implement the difference formulation for radiation transport into Cosmos++, a multidimensional, massively parallel, magneto hydrodynamics code for astrophysical applications (Peter Anninos - AX). The difference formulation is a new method for Symbolic Implicit Monte Carlo thermal transport (Brooks and Szöke - PAT). Formerly, simultaneous implementation of fully implicit Monte Carlo radiation transport in multiple dimensions on multiple processors had not been convincingly demonstrated. We found that a combination of the difference formulation and the inherent structure of Cosmos++ makes such an implementation both accurate and straightforward. We developed a "nearly nearest neighbor physics" technique to allow each processor to work independently, even with a fully implicit code. This technique coupled with the increased accuracy of an implicit Monte Carlo solution and the efficiency of parallel computing systems allows us to demonstrate the possibility of massively parallel thermal transport. This work was performed under the auspices of the U.S. Department of Energy by University of California Lawrence Livermore National Laboratory under contract No. W-7405-Eng-48

  8. Overview and applications of the Monte Carlo radiation transport kit at LLNL

    SciTech Connect

    Sale, K E

    1999-06-23

    Modern Monte Carlo radiation transport codes can be applied to model most applications of radiation, from optical to TeV photons, from thermal neutrons to heavy ions. Simulations can include any desired level of detail in three-dimensional geometries using the right level of detail in the reaction physics. The technology areas to which we have applied these codes include medical applications, defense, safety and security programs, nuclear safeguards and industrial and research system design and control. The main reason such applications are interesting is that by using these tools substantial savings of time and effort (i.e. money) can be realized. In addition it is possible to separate out and investigate computationally effects which can not be isolated and studied in experiments. In model calculations, just as in real life, one must take care in order to get the correct answer to the right question. Advancing computing technology allows extensions of Monte Carlo applications in two directions. First, as computers become more powerful more problems can be accurately modeled. Second, as computing power becomes cheaper Monte Carlo methods become accessible more widely. An overview of the set of Monte Carlo radiation transport tools in use a LLNL will be presented along with a few examples of applications and future directions.

  9. Neutron cross-section probability tables in TRIPOLI-3 Monte Carlo transport code

    SciTech Connect

    Zheng, S.H.; Vergnaud, T.; Nimal, J.C.

    1998-03-01

    Neutron transport calculations need an accurate treatment of cross sections. Two methods (multi-group and pointwise) are usually used. A third one, the probability table (PT) method, has been developed to produce a set of cross-section libraries, well adapted to describe the neutron interaction in the unresolved resonance energy range. Its advantage is to present properly the neutron cross-section fluctuation within a given energy group, allowing correct calculation of the self-shielding effect. Also, this PT cross-section representation is suitable for simulation of neutron propagation by the Monte Carlo method. The implementation of PTs in the TRIPOLI-3 three-dimensional general Monte Carlo transport code, developed at Commissariat a l`Energie Atomique, and several validation calculations are presented. The PT method is proved to be valid not only in the unresolved resonance range but also in all the other energy ranges.

  10. Implementation, capabilities, and benchmarking of Shift, a massively parallel Monte Carlo radiation transport code

    SciTech Connect

    Pandya, Tara M.; Johnson, Seth R.; Evans, Thomas M.; Davidson, Gregory G.; Hamilton, Steven P.; Godfrey, Andrew T.

    2015-12-21

    This paper discusses the implementation, capabilities, and validation of Shift, a massively parallel Monte Carlo radiation transport package developed and maintained at Oak Ridge National Laboratory. It has been developed to scale well from laptop to small computing clusters to advanced supercomputers. Special features of Shift include hybrid capabilities for variance reduction such as CADIS and FW-CADIS, and advanced parallel decomposition and tally methods optimized for scalability on supercomputing architectures. Shift has been validated and verified against various reactor physics benchmarks and compares well to other state-of-the-art Monte Carlo radiation transport codes such as MCNP5, CE KENO-VI, and OpenMC. Some specific benchmarks used for verification and validation include the CASL VERA criticality test suite and several Westinghouse AP1000® problems. These benchmark and scaling studies show promising results.

  11. Implementation, capabilities, and benchmarking of Shift, a massively parallel Monte Carlo radiation transport code

    DOE PAGES

    Pandya, Tara M.; Johnson, Seth R.; Evans, Thomas M.; ...

    2015-12-21

    This paper discusses the implementation, capabilities, and validation of Shift, a massively parallel Monte Carlo radiation transport package developed and maintained at Oak Ridge National Laboratory. It has been developed to scale well from laptop to small computing clusters to advanced supercomputers. Special features of Shift include hybrid capabilities for variance reduction such as CADIS and FW-CADIS, and advanced parallel decomposition and tally methods optimized for scalability on supercomputing architectures. Shift has been validated and verified against various reactor physics benchmarks and compares well to other state-of-the-art Monte Carlo radiation transport codes such as MCNP5, CE KENO-VI, and OpenMC. Somemore » specific benchmarks used for verification and validation include the CASL VERA criticality test suite and several Westinghouse AP1000® problems. These benchmark and scaling studies show promising results.« less

  12. A bounce-averaged Monte Carlo collision operator and ripple transport in a tokamak

    SciTech Connect

    Albert, J.M.; Boozer, A.H.

    1986-09-01

    A bounce-averaged Monte Carlo operator is presented that simulates bounce-averaged perturbative Lorentz pitch angle scattering of particles in toroidal plasmas, in particular a tokamak. In conjunction with bounce-averaged expressions for the deterministic motion, this operator allows a quick and inexpensive simulation on time scales long compared to a bounce time. An analytically tractable model of transport due to toroidal magnetic field ripple is described.

  13. High Altitude Neutral Particle Transport Using the Monte Carlo Simulation Code MCNP with Variable Density Atmosphere

    DTIC Science & Technology

    1991-03-01

    Monti Captain# USAF AFIT.’GNE/F•P/91M-6 (LO IA Approved for public release; distribution unlimited AFIT/IGNE/ENP/91M-6 HIGH ALTITUDE NEUTRAL... distribution unlimited Preface The purpose of this study was to perform Monte Carlo simulations of neutral particle transport with primary and secondary...21 4. Spatial Cell Geometry for Co-Altitude Detectors .................... .................. 44 5. MCNP vs. SMAUG Neutron Fluence at Source Co

  14. Systems guide to MCNP (Monte Carlo Neutron and Photon Transport Code)

    SciTech Connect

    Kirk, B.L.; West, J.T.

    1984-06-01

    The subject of this report is the implementation of the Los Alamos National Laboratory Monte Carlo Neutron and Photon Transport Code - Version 3 (MCNP) on the different types of computer systems, especially the IBM MVS system. The report supplements the documentation of the RSIC computer code package CCC-200/MCNP. Details of the procedure to follow in executing MCNP on the IBM computers, either in batch mode or interactive mode, are provided.

  15. Boltzmann equation and Monte Carlo studies of electron transport in resistive plate chambers

    NASA Astrophysics Data System (ADS)

    Bošnjaković, D.; Petrović, Z. Lj; White, R. D.; Dujko, S.

    2014-10-01

    A multi term theory for solving the Boltzmann equation and Monte Carlo simulation technique are used to investigate electron transport in Resistive Plate Chambers (RPCs) that are used for timing and triggering purposes in many high energy physics experiments at CERN and elsewhere. Using cross sections for electron scattering in C2H2F4, iso-C4H10 and SF6 as an input in our Boltzmann and Monte Carlo codes, we have calculated data for electron transport as a function of reduced electric field E/N in various C2H2F4/iso-C4H10/SF6 gas mixtures used in RPCs in the ALICE, CMS and ATLAS experiments. Emphasis is placed upon the explicit and implicit effects of non-conservative collisions (e.g. electron attachment and/or ionization) on the drift and diffusion. Among many interesting and atypical phenomena induced by the explicit effects of non-conservative collisions, we note the existence of negative differential conductivity (NDC) in the bulk drift velocity component with no indication of any NDC for the flux component in the ALICE timing RPC system. We systematically study the origin and mechanisms for such phenomena as well as the possible physical implications which arise from their explicit inclusion into models of RPCs. Spatially-resolved electron transport properties are calculated using a Monte Carlo simulation technique in order to understand these phenomena.

  16. A vectorized Monte Carlo code for modeling photon transport in SPECT

    SciTech Connect

    Smith, M.F. ); Floyd, C.E. Jr.; Jaszczak, R.J. Department of Radiology, Duke University Medical Center, Durham, North Carolina 27710 )

    1993-07-01

    A vectorized Monte Carlo computer code has been developed for modeling photon transport in single photon emission computed tomography (SPECT). The code models photon transport in a uniform attenuating region and photon detection by a gamma camera. It is adapted from a history-based Monte Carlo code in which photon history data are stored in scalar variables and photon histories are computed sequentially. The vectorized code is written in FORTRAN77 and uses an event-based algorithm in which photon history data are stored in arrays and photon history computations are performed within DO loops. The indices of the DO loops range over the number of photon histories, and these loops may take advantage of the vector processing unit of our Stellar GS1000 computer for pipelined computations. Without the use of the vector processor the event-based code is faster than the history-based code because of numerical optimization performed during conversion to the event-based algorithm. When only the detection of unscattered photons is modeled, the event-based code executes 5.1 times faster with the use of the vector processor than without; when the detection of scattered and unscattered photons is modeled the speed increase is a factor of 2.9. Vectorization is a valuable way to increase the performance of Monte Carlo code for modeling photon transport in SPECT.

  17. Bold-line Monte Carlo and the nonequilibrium physics of strongly correlated many-body systems

    NASA Astrophysics Data System (ADS)

    Cohen, Guy

    2015-03-01

    This talk summarizes real time bold-line diagrammatic Monte-Carlo approaches to quantum impurity models, which make significant headway against the sign problem by summing over corrections to self-consistent diagrammatic expansions rather than a bare diagrammatic series. When the bold-line method is combined with reduced dynamics techniques both local single-time properties and two time correlators such as Green functions can be computed at very long timescales, enabling studies of nonequilibrium steady state behavior of quantum impurity models and creating new solvers for nonequilibrium dynamical mean field theory. This work is supported by NSF DMR 1006282, NSF CHE-1213247, DOE ER 46932, TG-DMR120085 and TG-DMR130036, and the Yad Hanadiv-Rothschild Foundation.

  18. Photons, Electrons and Positrons Transport in 3D by Monte Carlo Techniques

    SciTech Connect

    2014-12-01

    Version 04 FOTELP-2014 is a new compact general purpose version of the previous FOTELP-2K6 code designed to simulate the transport of photons, electrons and positrons through three-dimensional material and sources geometry by Monte Carlo techniques, using subroutine package PENGEOM from the PENELOPE code under Linux-based and Windows OS. This new version includes routine ELMAG for electron and positron transport simulation in electric and magnetic fields, RESUME option and routine TIMER for obtaining starting random number and for measuring the time of simulation.

  19. Exponentially-convergent Monte Carlo for the 1-D transport equation

    SciTech Connect

    Peterson, J. R.; Morel, J. E.; Ragusa, J. C.

    2013-07-01

    We define a new exponentially-convergent Monte Carlo method for solving the one-speed 1-D slab-geometry transport equation. This method is based upon the use of a linear discontinuous finite-element trial space in space and direction to represent the transport solution. A space-direction h-adaptive algorithm is employed to restore exponential convergence after stagnation occurs due to inadequate trial-space resolution. This methods uses jumps in the solution at cell interfaces as an error indicator. Computational results are presented demonstrating the efficacy of the new approach. (authors)

  20. Development of A Monte Carlo Radiation Transport Code System For HEDS: Status Update

    NASA Technical Reports Server (NTRS)

    Townsend, Lawrence W.; Gabriel, Tony A.; Miller, Thomas M.

    2003-01-01

    Modifications of the Monte Carlo radiation transport code HETC are underway to extend the code to include transport of energetic heavy ions, such as are found in the galactic cosmic ray spectrum in space. The new HETC code will be available for use in radiation shielding applications associated with missions, such as the proposed manned mission to Mars. In this work the current status of code modification is described. Methods used to develop the required nuclear reaction models, including total, elastic and nuclear breakup processes, and their associated databases are also presented. Finally, plans for future work on the extended HETC code system and for its validation are described.

  1. Radiative transfer and spectroscopic databases: A line-sampling Monte Carlo approach

    NASA Astrophysics Data System (ADS)

    Galtier, Mathieu; Blanco, Stéphane; Dauchet, Jérémi; El Hafi, Mouna; Eymet, Vincent; Fournier, Richard; Roger, Maxime; Spiesser, Christophe; Terrée, Guillaume

    2016-03-01

    Dealing with molecular-state transitions for radiative transfer purposes involves two successive steps that both reach the complexity level at which physicists start thinking about statistical approaches: (1) constructing line-shaped absorption spectra as the result of very numerous state-transitions, (2) integrating over optical-path domains. For the first time, we show here how these steps can be addressed simultaneously using the null-collision concept. This opens the door to the design of Monte Carlo codes directly estimating radiative transfer observables from spectroscopic databases. The intermediate step of producing accurate high-resolution absorption spectra is no longer required. A Monte Carlo algorithm is proposed and applied to six one-dimensional test cases. It allows the computation of spectrally integrated intensities (over 25 cm-1 bands or the full IR range) in a few seconds, regardless of the retained database and line model. But free parameters need to be selected and they impact the convergence. A first possible selection is provided in full detail. We observe that this selection is highly satisfactory for quite distinct atmospheric and combustion configurations, but a more systematic exploration is still in progress.

  2. A portable, parallel, object-oriented Monte Carlo neutron transport code in C++

    SciTech Connect

    Lee, S.R.; Cummings, J.C.; Nolen, S.D. |

    1997-05-01

    We have developed a multi-group Monte Carlo neutron transport code using C++ and the Parallel Object-Oriented Methods and Applications (POOMA) class library. This transport code, called MC++, currently computes k and {alpha}-eigenvalues and is portable to and runs parallel on a wide variety of platforms, including MPPs, clustered SMPs, and individual workstations. It contains appropriate classes and abstractions for particle transport and, through the use of POOMA, for portable parallelism. Current capabilities of MC++ are discussed, along with physics and performance results on a variety of hardware, including all Accelerated Strategic Computing Initiative (ASCI) hardware. Current parallel performance indicates the ability to compute {alpha}-eigenvalues in seconds to minutes rather than hours to days. Future plans and the implementation of a general transport physics framework are also discussed.

  3. AREVA Developments for an Efficient and Reliable use of Monte Carlo codes for Radiation Transport Applications

    NASA Astrophysics Data System (ADS)

    Chapoutier, Nicolas; Mollier, François; Nolin, Guillaume; Culioli, Matthieu; Mace, Jean-Reynald

    2017-09-01

    In the context of the rising of Monte Carlo transport calculations for any kind of application, AREVA recently improved its suite of engineering tools in order to produce efficient Monte Carlo workflow. Monte Carlo codes, such as MCNP or TRIPOLI, are recognized as reference codes to deal with a large range of radiation transport problems. However the inherent drawbacks of theses codes - laboring input file creation and long computation time - contrast with the maturity of the treatment of the physical phenomena. The goals of the recent AREVA developments were to reach similar efficiency as other mature engineering sciences such as finite elements analyses (e.g. structural or fluid dynamics). Among the main objectives, the creation of a graphical user interface offering CAD tools for geometry creation and other graphical features dedicated to the radiation field (source definition, tally definition) has been reached. The computations times are drastically reduced compared to few years ago thanks to the use of massive parallel runs, and above all, the implementation of hybrid variance reduction technics. From now engineering teams are capable to deliver much more prompt support to any nuclear projects dealing with reactors or fuel cycle facilities from conceptual phase to decommissioning.

  4. Update on the Development and Validation of MERCURY: A Modern, Monte Carlo Particle Transport Code

    SciTech Connect

    Procassini, R J; Taylor, J M; McKinley, M S; Greenman, G M; Cullen, D E; O'Brien, M J; Beck, B R; Hagmann, C A

    2005-06-06

    An update on the development and validation of the MERCURY Monte Carlo particle transport code is presented. MERCURY is a modern, parallel, general-purpose Monte Carlo code being developed at the Lawrence Livermore National Laboratory. During the past year, several major algorithm enhancements have been completed. These include the addition of particle trackers for 3-D combinatorial geometry (CG), 1-D radial meshes, 2-D quadrilateral unstructured meshes, as well as a feature known as templates for defining recursive, repeated structures in CG. New physics capabilities include an elastic-scattering neutron thermalization model, support for continuous energy cross sections and S ({alpha}, {beta}) molecular bound scattering. Each of these new physics features has been validated through code-to-code comparisons with another Monte Carlo transport code. Several important computer science features have been developed, including an extensible input-parameter parser based upon the XML data description language, and a dynamic load-balance methodology for efficient parallel calculations. This paper discusses the recent work in each of these areas, and describes a plan for future extensions that are required to meet the needs of our ever expanding user base.

  5. Monte Carlo Methods for Estimating Interfacial Free Energies and Line Tensions

    NASA Astrophysics Data System (ADS)

    Binder, Kurt; Block, Benjamin; Das, Subir K.; Virnau, Peter; Winter, David

    2011-08-01

    Excess contributions to the free energy due to interfaces occur for many problems encountered in the statistical physics of condensed matter when coexistence between different phases is possible (e.g. wetting phenomena, nucleation, crystal growth, etc.). This article reviews two methods to estimate both interfacial free energies and line tensions by Monte Carlo simulations of simple models, (e.g. the Ising model, a symmetrical binary Lennard-Jones fluid exhibiting a miscibility gap, and a simple Lennard-Jones fluid). One method is based on thermodynamic integration. This method is useful to study flat and inclined interfaces for Ising lattices, allowing also the estimation of line tensions of three-phase contact lines, when the interfaces meet walls (where "surface fields" may act). A generalization to off-lattice systems is described as well. The second method is based on the sampling of the order parameter distribution of the system throughout the two-phase coexistence region of the model. Both the interface free energies of flat interfaces and of (spherical or cylindrical) droplets (or bubbles) can be estimated, including also systems with walls, where sphere-cap shaped wall-attached droplets occur. The curvature-dependence of the interfacial free energy is discussed, and estimates for the line tensions are compared to results from the thermodynamic integration method. Basic limitations of all these methods are critically discussed, and an outlook on other approaches is given.

  6. Thermal transport in nanocrystalline Si and SiGe by ab initio based Monte Carlo simulation

    PubMed Central

    Yang, Lina; Minnich, Austin J.

    2017-01-01

    Nanocrystalline thermoelectric materials based on Si have long been of interest because Si is earth-abundant, inexpensive, and non-toxic. However, a poor understanding of phonon grain boundary scattering and its effect on thermal conductivity has impeded efforts to improve the thermoelectric figure of merit. Here, we report an ab-initio based computational study of thermal transport in nanocrystalline Si-based materials using a variance-reduced Monte Carlo method with the full phonon dispersion and intrinsic lifetimes from first-principles as input. By fitting the transmission profile of grain boundaries, we obtain excellent agreement with experimental thermal conductivity of nanocrystalline Si [Wang et al. Nano Letters 11, 2206 (2011)]. Based on these calculations, we examine phonon transport in nanocrystalline SiGe alloys with ab-initio electron-phonon scattering rates. Our calculations show that low energy phonons still transport substantial amounts of heat in these materials, despite scattering by electron-phonon interactions, due to the high transmission of phonons at grain boundaries, and thus improvements in ZT are still possible by disrupting these modes. This work demonstrates the important insights into phonon transport that can be obtained using ab-initio based Monte Carlo simulations in complex nanostructured materials. PMID:28290484

  7. Thermal transport in nanocrystalline Si and SiGe by ab initio based Monte Carlo simulation.

    PubMed

    Yang, Lina; Minnich, Austin J

    2017-03-14

    Nanocrystalline thermoelectric materials based on Si have long been of interest because Si is earth-abundant, inexpensive, and non-toxic. However, a poor understanding of phonon grain boundary scattering and its effect on thermal conductivity has impeded efforts to improve the thermoelectric figure of merit. Here, we report an ab-initio based computational study of thermal transport in nanocrystalline Si-based materials using a variance-reduced Monte Carlo method with the full phonon dispersion and intrinsic lifetimes from first-principles as input. By fitting the transmission profile of grain boundaries, we obtain excellent agreement with experimental thermal conductivity of nanocrystalline Si [Wang et al. Nano Letters 11, 2206 (2011)]. Based on these calculations, we examine phonon transport in nanocrystalline SiGe alloys with ab-initio electron-phonon scattering rates. Our calculations show that low energy phonons still transport substantial amounts of heat in these materials, despite scattering by electron-phonon interactions, due to the high transmission of phonons at grain boundaries, and thus improvements in ZT are still possible by disrupting these modes. This work demonstrates the important insights into phonon transport that can be obtained using ab-initio based Monte Carlo simulations in complex nanostructured materials.

  8. Thermal transport in nanocrystalline Si and SiGe by ab initio based Monte Carlo simulation

    NASA Astrophysics Data System (ADS)

    Yang, Lina; Minnich, Austin J.

    2017-03-01

    Nanocrystalline thermoelectric materials based on Si have long been of interest because Si is earth-abundant, inexpensive, and non-toxic. However, a poor understanding of phonon grain boundary scattering and its effect on thermal conductivity has impeded efforts to improve the thermoelectric figure of merit. Here, we report an ab-initio based computational study of thermal transport in nanocrystalline Si-based materials using a variance-reduced Monte Carlo method with the full phonon dispersion and intrinsic lifetimes from first-principles as input. By fitting the transmission profile of grain boundaries, we obtain excellent agreement with experimental thermal conductivity of nanocrystalline Si [Wang et al. Nano Letters 11, 2206 (2011)]. Based on these calculations, we examine phonon transport in nanocrystalline SiGe alloys with ab-initio electron-phonon scattering rates. Our calculations show that low energy phonons still transport substantial amounts of heat in these materials, despite scattering by electron-phonon interactions, due to the high transmission of phonons at grain boundaries, and thus improvements in ZT are still possible by disrupting these modes. This work demonstrates the important insights into phonon transport that can be obtained using ab-initio based Monte Carlo simulations in complex nanostructured materials.

  9. Monte Carlo simulations of the particle transport in semiconductor detectors of fast neutrons

    NASA Astrophysics Data System (ADS)

    Sedlačková, Katarína; Zaťko, Bohumír; Šagátová, Andrea; Nečas, Vladimír

    2013-05-01

    Several Monte Carlo all-particle transport codes are under active development around the world. In this paper we focused on the capabilities of the MCNPX code (Monte Carlo N-Particle eXtended) to follow the particle transport in semiconductor detector of fast neutrons. Semiconductor detector based on semi-insulating GaAs was the object of our investigation. As converter material capable to produce charged particles from the (n, p) interaction, a high-density polyethylene (HDPE) was employed. As the source of fast neutrons, the 239Pu-Be neutron source was used in the model. The simulations were performed using the MCNPX code which makes possible to track not only neutrons but also recoiled protons at all interesting energies. Hence, the MCNPX code enables seamless particle transport and no other computer program is needed to process the particle transport. The determination of the optimal thickness of the conversion layer and the minimum thickness of the active region of semiconductor detector as well as the energy spectra simulation were the principal goals of the computer modeling. Theoretical detector responses showed that the best detection efficiency can be achieved for 500 μm thick HDPE converter layer. The minimum detector active region thickness has been estimated to be about 400 μm.

  10. Ion beam transport in tissue-like media using the Monte Carlo code SHIELD-HIT.

    PubMed

    Gudowska, Irena; Sobolevsky, Nikolai; Andreo, Pedro; Belkić, Dzevad; Brahme, Anders

    2004-05-21

    The development of the Monte Carlo code SHIELD-HIT (heavy ion transport) for the simulation of the transport of protons and heavier ions in tissue-like media is described. The code SHIELD-HIT, a spin-off of SHIELD (available as RSICC CCC-667), extends the transport of hadron cascades from standard targets to that of ions in arbitrary tissue-like materials, taking into account ionization energy-loss straggling and multiple Coulomb scattering effects. The consistency of the results obtained with SHIELD-HIT has been verified against experimental data and other existing Monte Carlo codes (PTRAN, PETRA), as well as with deterministic models for ion transport, comparing depth distributions of energy deposition by protons, 12C and 20Ne ions impinging on water. The SHIELD-HIT code yields distributions consistent with a proper treatment of nuclear inelastic collisions. Energy depositions up to and well beyond the Bragg peak due to nuclear fragmentations are well predicted. Satisfactory agreement is also found with experimental determinations of the number of fragments of a given type, as a function of depth in water, produced by 12C and 14N ions of 670 MeV u(-1), although less favourable agreement is observed for heavier projectiles such as 16O ions of the same energy. The calculated neutron spectra differential in energy and angle produced in a mimic of a Martian rock by irradiation with 12C ions of 290 MeV u(-1) also shows good agreement with experimental data. It is concluded that a careful analysis of stopping power data for different tissues is necessary for radiation therapy applications, since an incorrect estimation of the position of the Bragg peak might lead to a significant deviation from the prescribed dose in small target volumes. The results presented in this study indicate the usefulness of the SHIELD-HIT code for Monte Carlo simulations in the field of light ion radiation therapy.

  11. An object-oriented implementation of a parallel Monte Carlo code for radiation transport

    NASA Astrophysics Data System (ADS)

    Santos, Pedro Duarte; Lani, Andrea

    2016-05-01

    This paper describes the main features of a state-of-the-art Monte Carlo solver for radiation transport which has been implemented within COOLFluiD, a world-class open source object-oriented platform for scientific simulations. The Monte Carlo code makes use of efficient ray tracing algorithms (for 2D, axisymmetric and 3D arbitrary unstructured meshes) which are described in detail. The solver accuracy is first verified in testcases for which analytical solutions are available, then validated for a space re-entry flight experiment (i.e. FIRE II) for which comparisons against both experiments and reference numerical solutions are provided. Through the flexible design of the physical models, ray tracing and parallelization strategy (fully reusing the mesh decomposition inherited by the fluid simulator), the implementation was made efficient and reusable.

  12. Implementation, capabilities, and benchmarking of Shift, a massively parallel Monte Carlo radiation transport code

    NASA Astrophysics Data System (ADS)

    Pandya, Tara M.; Johnson, Seth R.; Evans, Thomas M.; Davidson, Gregory G.; Hamilton, Steven P.; Godfrey, Andrew T.

    2016-03-01

    This work discusses the implementation, capabilities, and validation of Shift, a massively parallel Monte Carlo radiation transport package authored at Oak Ridge National Laboratory. Shift has been developed to scale well from laptops to small computing clusters to advanced supercomputers and includes features such as support for multiple geometry and physics engines, hybrid capabilities for variance reduction methods such as the Consistent Adjoint-Driven Importance Sampling methodology, advanced parallel decompositions, and tally methods optimized for scalability on supercomputing architectures. The scaling studies presented in this paper demonstrate good weak and strong scaling behavior for the implemented algorithms. Shift has also been validated and verified against various reactor physics benchmarks, including the Consortium for Advanced Simulation of Light Water Reactors' Virtual Environment for Reactor Analysis criticality test suite and several Westinghouse AP1000® problems presented in this paper. These benchmark results compare well to those from other contemporary Monte Carlo codes such as MCNP5 and KENO.

  13. Development of perturbation Monte Carlo methods for polarized light transport in a discrete particle scattering model

    PubMed Central

    Nguyen, Jennifer; Hayakawa, Carole K.; Mourant, Judith R.; Venugopalan, Vasan; Spanier, Jerome

    2016-01-01

    We present a polarization-sensitive, transport-rigorous perturbation Monte Carlo (pMC) method to model the impact of optical property changes on reflectance measurements within a discrete particle scattering model. The model consists of three log-normally distributed populations of Mie scatterers that approximate biologically relevant cervical tissue properties. Our method provides reflectance estimates for perturbations across wavelength and/or scattering model parameters. We test our pMC model performance by perturbing across number densities and mean particle radii, and compare pMC reflectance estimates with those obtained from conventional Monte Carlo simulations. These tests allow us to explore different factors that control pMC performance and to evaluate the gains in computational efficiency that our pMC method provides. PMID:27231642

  14. Development of perturbation Monte Carlo methods for polarized light transport in a discrete particle scattering model.

    PubMed

    Nguyen, Jennifer; Hayakawa, Carole K; Mourant, Judith R; Venugopalan, Vasan; Spanier, Jerome

    2016-05-01

    We present a polarization-sensitive, transport-rigorous perturbation Monte Carlo (pMC) method to model the impact of optical property changes on reflectance measurements within a discrete particle scattering model. The model consists of three log-normally distributed populations of Mie scatterers that approximate biologically relevant cervical tissue properties. Our method provides reflectance estimates for perturbations across wavelength and/or scattering model parameters. We test our pMC model performance by perturbing across number densities and mean particle radii, and compare pMC reflectance estimates with those obtained from conventional Monte Carlo simulations. These tests allow us to explore different factors that control pMC performance and to evaluate the gains in computational efficiency that our pMC method provides.

  15. Monte Carlo model of light transport in multi-layered tubular organs

    NASA Astrophysics Data System (ADS)

    Zhang, Yunyao; Zhu, Jingping; Zhang, Ning

    2017-02-01

    We present a Monte Carlo static light migration model (Endo-MCML) to simulate endoscopic optical spectroscopy for tubular organs such as esophagus and colon. The model employs multi-layered hollow cylinder which emitting and receiving light both from the inner boundary to meet the conditions of endoscopy. Inhomogeneous sphere can be added in tissue layers to model cancer or other abnormal changes. The 3D light distribution and exit angle would be recorded as results. The accuracy of the model has been verified by Multi-layered Monte Carlo(MCML) method and NIRFAST. This model can be used for the forward modeling of light transport during endoscopically diffuse optical spectroscopy, light scattering spectroscopy, reflectance spectroscopy and other static optical detection or imaging technologies.

  16. METHES: A Monte Carlo collision code for the simulation of electron transport in low temperature plasmas

    NASA Astrophysics Data System (ADS)

    Rabie, M.; Franck, C. M.

    2016-06-01

    We present a freely available MATLAB code for the simulation of electron transport in arbitrary gas mixtures in the presence of uniform electric fields. For steady-state electron transport, the program provides the transport coefficients, reaction rates and the electron energy distribution function. The program uses established Monte Carlo techniques and is compatible with the electron scattering cross section files from the open-access Plasma Data Exchange Project LXCat. The code is written in object-oriented design, allowing the tracing and visualization of the spatiotemporal evolution of electron swarms and the temporal development of the mean energy and the electron number due to attachment and/or ionization processes. We benchmark our code with well-known model gases as well as the real gases argon, N2, O2, CF4, SF6 and mixtures of N2 and O2.

  17. Validation of Monte-Carlo simulations with measurements at the ICON beam-line at SINQ

    NASA Astrophysics Data System (ADS)

    Giller, L.; Filges, U.; Kühne, G.; Wohlmuther, M.; Zanini, L.

    2008-02-01

    ICON is the new cold neutron imaging facility at the neutron spallation source SINQ. The ICON facility is placed at beam-line S52 with direct view to the cold liquid D 2 moderator. The beam-line includes a 4.4 m long collimation section followed by a 11 m long flight path to the imaging system. The essential part of the collimation section is composed of six revolving drums and a variable aperture wheel. Depending on the investigated object, different apertures are used. Measurements have shown that each setup has a different spatial neutron flux distribution and specific beam profiles. Measured beam profiles have been used to validate results of simulations coupling the Monte-Carlo program MCNPX with the neutron ray-tracing program McStas. In a first step, MCNPX was used to calculate neutron spectra closed to the SINQ target, at the entrance of the collimation section. These results served as an input for McStas where the beam-line itself was simulated. In the present paper, experimental and theoretical results will be compared and discussed.

  18. Development of a hybrid kinetic-fluid model for line radiation transport in magnetic fusion plasmas

    NASA Astrophysics Data System (ADS)

    Rosato, J.; Marandet, Y.; Reiter, D.; Stamm, R.

    2017-03-01

    We report on a transport model for the Lyman line radiation in optically thick divertor plasma conditions encountered in exhaust systems in magnetic fusion devices. The model is designed to switch automatically between a kinetic and a continuum description according to the plasma conditions and to the spectral range. A kinetic treatment is retained for photons with a large mean free path (line wings), whereas a continuum description of the radiation field is invoked in highly absorbing or scattering regions (core photons). Prototypical calculations of this so-called δf Monte Carlo type of the Lyman α photo-excitation rate in slab geometry are performed as an illustration. The hybrid method is suggested as a candidate for speeding up the kinetic transport codes currently involved in magnetic fusion research for ITER and DEMO divertor (power and particle exhaust system) design.

  19. Piecewise linear discretization of Symbolic Implicit Monte Carlo radiation transport in the difference formulation

    SciTech Connect

    Brooks III, E D; Szoke, A; Peterson, J L

    2005-11-15

    We describe a Monte Carlo solution for time dependent photon transport, in the difference formulation with the material in local thermodynamic equilibrium (LTE), that is piecewise linear in its treatment of the material state variable. Our method employs a Galerkin solution for the material energy equation while using Symbolic Implicit Monte Carlo (SIMC) to solve the transport equation. In constructing the scheme, one has the freedom to choose between expanding the material temperature, or the equivalent black body radiation energy density at the material temperature, in terms of finite element basis functions. The former provides a linear treatment of the material energy while the latter provides a linear treatment of the radiative coupling between zones. Subject to the conditional use of a lumped material energy in the vicinity of strong gradients, possible with a linear treatment of the material energy, our approach provides a robust solution for time dependent transport of thermally emitted radiation that can address a wide range of problems. It produces accurate results in the diffusion limit.

  20. A fast Monte Carlo code for proton transport in radiation therapy based on MCNPX.

    PubMed

    Jabbari, Keyvan; Seuntjens, Jan

    2014-07-01

    An important requirement for proton therapy is a software for dose calculation. Monte Carlo is the most accurate method for dose calculation, but it is very slow. In this work, a method is developed to improve the speed of dose calculation. The method is based on pre-generated tracks for particle transport. The MCNPX code has been used for generation of tracks. A set of data including the track of the particle was produced in each particular material (water, air, lung tissue, bone, and soft tissue). This code can transport protons in wide range of energies (up to 200 MeV for proton). The validity of the fast Monte Carlo (MC) code is evaluated with data MCNPX as a reference code. While analytical pencil beam algorithm transport shows great errors (up to 10%) near small high density heterogeneities, there was less than 2% deviation of MCNPX results in our dose calculation and isodose distribution. In terms of speed, the code runs 200 times faster than MCNPX. In the Fast MC code which is developed in this work, it takes the system less than 2 minutes to calculate dose for 10(6) particles in an Intel Core 2 Duo 2.66 GHZ desktop computer.

  1. A fast Monte Carlo code for proton transport in radiation therapy based on MCNPX

    PubMed Central

    Jabbari, Keyvan; Seuntjens, Jan

    2014-01-01

    An important requirement for proton therapy is a software for dose calculation. Monte Carlo is the most accurate method for dose calculation, but it is very slow. In this work, a method is developed to improve the speed of dose calculation. The method is based on pre-generated tracks for particle transport. The MCNPX code has been used for generation of tracks. A set of data including the track of the particle was produced in each particular material (water, air, lung tissue, bone, and soft tissue). This code can transport protons in wide range of energies (up to 200 MeV for proton). The validity of the fast Monte Carlo (MC) code is evaluated with data MCNPX as a reference code. While analytical pencil beam algorithm transport shows great errors (up to 10%) near small high density heterogeneities, there was less than 2% deviation of MCNPX results in our dose calculation and isodose distribution. In terms of speed, the code runs 200 times faster than MCNPX. In the Fast MC code which is developed in this work, it takes the system less than 2 minutes to calculate dose for 106 particles in an Intel Core 2 Duo 2.66 GHZ desktop computer. PMID:25190994

  2. PBMC: Pre-conditioned Backward Monte Carlo code for radiative transport in planetary atmospheres

    NASA Astrophysics Data System (ADS)

    García Muñoz, A.; Mills, F. P.

    2017-08-01

    PBMC (Pre-Conditioned Backward Monte Carlo) solves the vector Radiative Transport Equation (vRTE) and can be applied to planetary atmospheres irradiated from above. The code builds the solution by simulating the photon trajectories from the detector towards the radiation source, i.e. in the reverse order of the actual photon displacements. In accounting for the polarization in the sampling of photon propagation directions and pre-conditioning the scattering matrix with information from the scattering matrices of prior (in the BMC integration order) photon collisions, PBMC avoids the unstable and biased solutions of classical BMC algorithms for conservative, optically-thick, strongly-polarizing media such as Rayleigh atmospheres.

  3. The Development of WARP - A Framework for Continuous Energy Monte Carlo Neutron Transport in General 3D Geometries on GPUs

    NASA Astrophysics Data System (ADS)

    Bergmann, Ryan

    reaction types as contiguous as possible and removes completed histories from the transport cycle. The sort reduces the amount of divergence in GPU ``thread blocks,'' keeps the SIMD units as full as possible, and eliminates using memory bandwidth to check if a neutron in the batch has been terminated or not. Using a remapping vector means the data access pattern is irregular, but this is mitigated by using large batch sizes where the GPU can effectively eliminate the high cost of irregular global memory access. WARP modifies the standard unionized energy grid implementation to reduce memory traffic. Instead of storing a matrix of pointers indexed by reaction type and energy, WARP stores three matrices. The first contains cross section values, the second contains pointers to angular distributions, and a third contains pointers to energy distributions. This linked list type of layout increases memory usage, but lowers the number of data loads that are needed to determine a reaction by eliminating a pointer load to find a cross section value. Optimized, high-performance GPU code libraries are also used by WARP wherever possible. The CUDA performance primitives (CUDPP) library is used to perform the parallel reductions, sorts and sums, the CURAND library is used to seed the linear congruential random number generators, and the OptiX ray tracing framework is used for geometry representation. OptiX is a highly-optimized library developed by NVIDIA that automatically builds hierarchical acceleration structures around user-input geometry so only surfaces along a ray line need to be queried in ray tracing. WARP also performs material and cell number queries with OptiX by using a point-in-polygon like algorithm. WARP has shown that GPUs are an effective platform for performing Monte Carlo neutron transport with continuous energy cross sections. Currently, WARP is the most detailed and feature-rich program in existence for performing continuous energy Monte Carlo neutron transport in

  4. Radiation Transport for Explosive Outflows: A Multigroup Hybrid Monte Carlo Method

    NASA Astrophysics Data System (ADS)

    Wollaeger, Ryan T.; van Rossum, Daniel R.; Graziani, Carlo; Couch, Sean M.; Jordan, George C., IV; Lamb, Donald Q.; Moses, Gregory A.

    2013-12-01

    We explore Implicit Monte Carlo (IMC) and discrete diffusion Monte Carlo (DDMC) for radiation transport in high-velocity outflows with structured opacity. The IMC method is a stochastic computational technique for nonlinear radiation transport. IMC is partially implicit in time and may suffer in efficiency when tracking MC particles through optically thick materials. DDMC accelerates IMC in diffusive domains. Abdikamalov extended IMC and DDMC to multigroup, velocity-dependent transport with the intent of modeling neutrino dynamics in core-collapse supernovae. Densmore has also formulated a multifrequency extension to the originally gray DDMC method. We rigorously formulate IMC and DDMC over a high-velocity Lagrangian grid for possible application to photon transport in the post-explosion phase of Type Ia supernovae. This formulation includes an analysis that yields an additional factor in the standard IMC-to-DDMC spatial interface condition. To our knowledge the new boundary condition is distinct from others presented in prior DDMC literature. The method is suitable for a variety of opacity distributions and may be applied to semi-relativistic radiation transport in simple fluids and geometries. Additionally, we test the code, called SuperNu, using an analytic solution having static material, as well as with a manufactured solution for moving material with structured opacities. Finally, we demonstrate with a simple source and 10 group logarithmic wavelength grid that IMC-DDMC performs better than pure IMC in terms of accuracy and speed when there are large disparities between the magnitudes of opacities in adjacent groups. We also present and test our implementation of the new boundary condition.

  5. Comparison of generalized transport and Monte-Carlo models of the escape of a minor species

    NASA Technical Reports Server (NTRS)

    Demars, H. G.; Barakat, A. R.; Schunk, R. W.

    1993-01-01

    The steady-state diffusion of a minor species through a static background species is studied using a Monte Carlo model and a generalized 16-moment transport model. The two models are in excellent agreement in the collision-dominated region and in the 'transition region'. In the 'collisionless' region the 16-moment solution contains two singularities, and physical meaning cannot be assigned to the solution in their vicinity. In all regions, agreement between the models is best for the distribution function and for the lower-order moments and is less good for higher-order moments. Moments of order higher than the heat flow and hence beyond the level of description provided by the transport model have a noticeable effect on the shape of distribution functions in the collisionless region.

  6. Monte Carlo Simulation of Electron Transport in 4H- and 6H-SiC

    SciTech Connect

    Sun, C. C.; You, A. H.; Wong, E. K.

    2010-07-07

    The Monte Carlo (MC) simulation of electron transport properties at high electric field region in 4H- and 6H-SiC are presented. This MC model includes two non-parabolic conduction bands. Based on the material parameters, the electron scattering rates included polar optical phonon scattering, optical phonon scattering and acoustic phonon scattering are evaluated. The electron drift velocity, energy and free flight time are simulated as a function of applied electric field at an impurity concentration of 1x10{sup 18} cm{sup 3} in room temperature. The simulated drift velocity with electric field dependencies is in a good agreement with experimental results found in literature. The saturation velocities for both polytypes are close, but the scattering rates are much more pronounced for 6H-SiC. Our simulation model clearly shows complete electron transport properties in 4H- and 6H-SiC.

  7. Comparison of generalized transport and Monte-Carlo models of the escape of a minor species

    NASA Technical Reports Server (NTRS)

    Demars, H. G.; Barakat, A. R.; Schunk, R. W.

    1993-01-01

    The steady-state diffusion of a minor species through a static background species is studied using a Monte Carlo model and a generalized 16-moment transport model. The two models are in excellent agreement in the collision-dominated region and in the 'transition region'. In the 'collisionless' region the 16-moment solution contains two singularities, and physical meaning cannot be assigned to the solution in their vicinity. In all regions, agreement between the models is best for the distribution function and for the lower-order moments and is less good for higher-order moments. Moments of order higher than the heat flow and hence beyond the level of description provided by the transport model have a noticeable effect on the shape of distribution functions in the collisionless region.

  8. Deterministic and Monte Carlo Neutron Transport Calculations of the Dounreay Fast Breeder Reactor

    SciTech Connect

    Ziver, A. Kemal; Shahdatullah, Sabu; Eaton, Matthew D.; Oliviera, Cassiano R.E. de; Ackroyd, Ron T.; Umpleby, Adrian P.; Pain, Christopher C.; Goddard, Antony J. H.; Fitzpatrick, James

    2004-12-15

    A homogenized whole-reactor cylindrical model of the Dounreay Fast Reactor has been constructed using both deterministic and Monte Carlo codes to determine neutron flux distributions inside the core and at various out-of-core components. The principal aim is to predict neutron-induced activation levels using both methods and make comparisons against the measured thermal reaction rates. Neutron transport calculations have been performed for a fixed source using a spatially lumped fission neutron distribution, which has been derived from measurements. The deterministic code used is based on the finite element approximation to the multigroup second-order even-parity neutron transport equation, which is implemented in the EVENT code. The Monte Carlo solutions were obtained using the MCNP4C code, in which neutron cross sections are represented in pointwise (or continuous) form. We have compared neutron spectra at various locations not only to show differences between using multigroup deterministic and continuous energy (point nuclear data) Monte Carlo methods but also to assess neutron-induced activation levels calculated using the spectra obtained from both methods. Results were also compared against experiments that were carried out to determine neutron-induced reaction rates. To determine activation levels, we employed the European Activation Code System FISPACT. We have found that the neutron spectra calculated at various in-core and out-of-core components show some differences, which mainly reflect the use of multigroup and point energy nuclear data libraries and methods employed, but these differences have not resulted in large errors on the calculated activation levels of materials that are important (such as steel components) for decommissioning studies of the reactor. The agreement of calculated reaction rates of thermal neutron detectors such as the {sup 55}Mn(n,{gamma}){sup 56}Mn against measurements was satisfactory.

  9. An algorithm for Monte Carlo simulation of coupled electron-photon transport

    NASA Astrophysics Data System (ADS)

    Salvat, F.; Fernández-Varea, J. M.; Sempau, J.; Acosta, E.; Baró, J.

    1997-11-01

    An algorithm for Monte Carlo simulation of coupled electron-photon transport is described. Electron and positron tracks are generated by means of PENELOPE, a mixed procedure developed by Baró et al. [Nucl. Instr. and Meth. B 100 (1995) 31]. The simulation of photon transport follows the conventional, detailed method. Photons are assumed to interact via coherent and incoherent scattering, photoelectric absorption and electron-positron pair production. Photon interactions are simulated through analytical differential cross sections, derived from simple physical models and renormalized to reproduce accurate attenuation coefficients available from the literature. The combined algorithm has been implemented in a FORTRAN 77 computer code that generates electron-photon showers in arbitrary materials for the energy range from ˜1 GeV down to 1 keV or the binding energy of the L-shell of the heaviest element in the medium, whichever is the largest. The code is capable of following secondary particles that are generated within this energy range. The reliability of the algorithm and computer code is demonstrated by comparing simulation results with experimental data and with results from other Monte Carlo codes.

  10. Optimizations of the energy grid search algorithm in continuous-energy Monte Carlo particle transport codes

    NASA Astrophysics Data System (ADS)

    Walsh, Jonathan A.; Romano, Paul K.; Forget, Benoit; Smith, Kord S.

    2015-11-01

    In this work we propose, implement, and test various optimizations of the typical energy grid-cross section pair lookup algorithm in Monte Carlo particle transport codes. The key feature common to all of the optimizations is a reduction in the length of the vector of energies that must be searched when locating the index of a particle's current energy. Other factors held constant, a reduction in energy vector length yields a reduction in CPU time. The computational methods we present here are physics-informed. That is, they are designed to utilize the physical information embedded in a simulation in order to reduce the length of the vector to be searched. More specifically, the optimizations take advantage of information about scattering kinematics, neutron cross section structure and data representation, and also the expected characteristics of a system's spatial flux distribution and energy spectrum. The methods that we present are implemented in the OpenMC Monte Carlo neutron transport code as part of this work. The gains in computational efficiency, as measured by overall code speedup, associated with each of the optimizations are demonstrated in both serial and multithreaded simulations of realistic systems. Depending on the system, simulation parameters, and optimization method employed, overall code speedup factors of 1.2-1.5, relative to the typical single-nuclide binary search algorithm, are routinely observed.

  11. Particle Communication and Domain Neighbor Coupling: Scalable Domain Decomposed Algorithms for Monte Carlo Particle Transport

    SciTech Connect

    O'Brien, M. J.; Brantley, P. S.

    2015-01-20

    In order to run Monte Carlo particle transport calculations on new supercomputers with hundreds of thousands or millions of processors, care must be taken to implement scalable algorithms. This means that the algorithms must continue to perform well as the processor count increases. In this paper, we examine the scalability of:(1) globally resolving the particle locations on the correct processor, (2) deciding that particle streaming communication has finished, and (3) efficiently coupling neighbor domains together with different replication levels. We have run domain decomposed Monte Carlo particle transport on up to 221 = 2,097,152 MPI processes on the IBM BG/Q Sequoia supercomputer and observed scalable results that agree with our theoretical predictions. These calculations were carefully constructed to have the same amount of work on every processor, i.e. the calculation is already load balanced. We also examine load imbalanced calculations where each domain’s replication level is proportional to its particle workload. In this case we show how to efficiently couple together adjacent domains to maintain within workgroup load balance and minimize memory usage.

  12. Fast Monte Carlo Electron-Photon Transport Method and Application in Accurate Radiotherapy

    NASA Astrophysics Data System (ADS)

    Hao, Lijuan; Sun, Guangyao; Zheng, Huaqing; Song, Jing; Chen, Zhenping; Li, Gui

    2014-06-01

    Monte Carlo (MC) method is the most accurate computational method for dose calculation, but its wide application on clinical accurate radiotherapy is hindered due to its poor speed of converging and long computation time. In the MC dose calculation research, the main task is to speed up computation while high precision is maintained. The purpose of this paper is to enhance the calculation speed of MC method for electron-photon transport with high precision and ultimately to reduce the accurate radiotherapy dose calculation time based on normal computer to the level of several hours, which meets the requirement of clinical dose verification. Based on the existing Super Monte Carlo Simulation Program (SuperMC), developed by FDS Team, a fast MC method for electron-photon coupled transport was presented with focus on two aspects: firstly, through simplifying and optimizing the physical model of the electron-photon transport, the calculation speed was increased with slightly reduction of calculation accuracy; secondly, using a variety of MC calculation acceleration methods, for example, taking use of obtained information in previous calculations to avoid repeat simulation of particles with identical history; applying proper variance reduction techniques to accelerate MC method convergence rate, etc. The fast MC method was tested by a lot of simple physical models and clinical cases included nasopharyngeal carcinoma, peripheral lung tumor, cervical carcinoma, etc. The result shows that the fast MC method for electron-photon transport was fast enough to meet the requirement of clinical accurate radiotherapy dose verification. Later, the method will be applied to the Accurate/Advanced Radiation Therapy System ARTS as a MC dose verification module.

  13. Multilevel Monte Carlo for Two Phase Flow and Transport in a Subsurface Reservoir with Random Permeability

    NASA Astrophysics Data System (ADS)

    Müller, Florian; Jenny, Patrick; Daniel, Meyer

    2014-05-01

    To a large extent, the flow and transport behaviour within a subsurface reservoir is governed by its permeability. Typically, permeability measurements of a subsurface reservoir are affordable at few spatial locations only. Due to this lack of information, permeability fields are preferably described by stochastic models rather than deterministically. A stochastic method is needed to asses the transition of the input uncertainty in permeability through the system of partial differential equations describing flow and transport to the output quantity of interest. Monte Carlo (MC) is an established method for quantifying uncertainty arising in subsurface flow and transport problems. Although robust and easy to implement, MC suffers from slow statistical convergence. To reduce the computational cost of MC, the multilevel Monte Carlo (MLMC) method was introduced. Instead of sampling a random output quantity of interest on the finest affordable grid as in case of MC, MLMC operates on a hierarchy of grids. If parts of the sampling process are successfully delegated to coarser grids where sampling is inexpensive, MLMC can dramatically outperform MC. MLMC has proven to accelerate MC for several applications including integration problems, stochastic ordinary differential equations in finance as well as stochastic elliptic and hyperbolic partial differential equations. In this study, MLMC is combined with a reservoir simulator to assess uncertain two phase (water/oil) flow and transport within a random permeability field. The performance of MLMC is compared to MC for a two-dimensional reservoir with a multi-point Gaussian logarithmic permeability field. It is found that MLMC yields significant speed-ups with respect to MC while providing results of essentially equal accuracy. This finding holds true not only for one specific Gaussian logarithmic permeability model but for a range of correlation lengths and variances.

  14. TRANSPORT OF WASTE SIMULANTS IN PJM VENT LINES

    SciTech Connect

    Qureshi, Z

    2007-02-21

    The experimental work was conducted to determine whether there is a potential for waste simulant to transport or 'creep' up the air link line and contaminate the pulse jet vent system, and possibly cause long term restriction of the air link line. Additionally, if simulant creep occurred, establish operating parameters for washing down the line. The amount of the addition of flush fluids and mixer downtime must be quantified.

  15. Waterborne Transportation Lines of the United States

    DTIC Science & Technology

    1988-10-01

    9IVEIIFRIP MAR OE INTEB!- I I I I S MARI BAL.ISC. I I I I IN C CAL RICE TRANSPORT S578241 1 1559?164061 656.1 E3.01 30.I 160001 30000f 1t2.6SCRE...3 9.01 000 - 19800 3 31.70 02.11 - 0 I I " TAMA 120139 13 64 11 15 .31 0.00 9.03 - 0 15003 .5II. 1L PPS 3 U15 I 3 15551 50.01 1.1 1 10 I 3 3 N 1 1 3...F 35.0!ONE !FL TAMA 1952 F F1F F F 51.0! 17.C! 6.N ! 8 8 8 8 JLG 506335 F 1013416. 38.3! 11.9! S.3! ZOOI - F 5.ONE !FL TNN 1960T 1 F F ! 09.5! 11.9

  16. ICF target 2D modeling using Monte Carlo SNB electron thermal transport in DRACO

    NASA Astrophysics Data System (ADS)

    Chenhall, Jeffrey; Cao, Duc; Moses, Gregory

    2016-10-01

    The iSNB (implicit Schurtz Nicolai Busquet multigroup diffusion electron thermal transport method is adapted into a Monte Carlo (MC) transport method to better model angular and long mean free path non-local effects. The MC model was first implemented in the 1D LILAC code to verify consistency with the iSNB model. Implementation of the MC SNB model in the 2D DRACO code enables higher fidelity non-local thermal transport modeling in 2D implosions such as polar drive experiments on NIF. The final step is to optimize the MC model by hybridizing it with a MC version of the iSNB diffusion method. The hybrid method will combine the efficiency of a diffusion method in intermediate mean free path regions with the accuracy of a transport method in long mean free path regions allowing for improved computational efficiency while maintaining accuracy. Work to date on the method will be presented. This work was supported by Sandia National Laboratories and the Univ. of Rochester Laboratory for Laser Energetics.

  17. 3D electro-thermal Monte Carlo study of transport in confined silicon devices

    NASA Astrophysics Data System (ADS)

    Mohamed, Mohamed Y.

    The simultaneous explosion of portable microelectronics devices and the rapid shrinking of microprocessor size have provided a tremendous motivation to scientists and engineers to continue the down-scaling of these devices. For several decades, innovations have allowed components such as transistors to be physically reduced in size, allowing the famous Moore's law to hold true. As these transistors approach the atomic scale, however, further reduction becomes less probable and practical. As new technologies overcome these limitations, they face new, unexpected problems, including the ability to accurately simulate and predict the behavior of these devices, and to manage the heat they generate. This work uses a 3D Monte Carlo (MC) simulator to investigate the electro-thermal behavior of quasi-one-dimensional electron gas (1DEG) multigate MOSFETs. In order to study these highly confined architectures, the inclusion of quantum correction becomes essential. To better capture the influence of carrier confinement, the electrostatically quantum-corrected full-band MC model has the added feature of being able to incorporate subband scattering. The scattering rate selection introduces quantum correction into carrier movement. In addition to the quantum effects, scaling introduces thermal management issues due to the surge in power dissipation. Solving these problems will continue to bring improvements in battery life, performance, and size constraints of future devices. We have coupled our electron transport Monte Carlo simulation to Aksamija's phonon transport so that we may accurately and efficiently study carrier transport, heat generation, and other effects at the transistor level. This coupling utilizes anharmonic phonon decay and temperature dependent scattering rates. One immediate advantage of our coupled electro-thermal Monte Carlo simulator is its ability to provide an accurate description of the spatial variation of self-heating and its effect on non

  18. Charge Transport Properties in Disordered Organic Semiconductor as a Function of Charge Density: Monte Carlo Simulation

    NASA Astrophysics Data System (ADS)

    Shukri, Seyfan Kelil

    2017-01-01

    We have done Kinetic Monte Carlo (KMC) simulations to investigate the effect of charge carrier density on the electrical conductivity and carrier mobility in disordered organic semiconductors using a lattice model. The density of state (DOS) of the system are considered to be Gaussian and exponential. Our simulations reveal that the mobility of the charge carrier increases with charge carrier density for both DOSs. In contrast, the mobility of charge carriers decreases as the disorder increases. In addition the shape of the DOS has a significance effect on the charge transport properties as a function of density which are clearly seen. On the other hand, for the same distribution width and at low carrier density, the change occurred on the conductivity and mobility for a Gaussian DOS is more pronounced than that for the exponential DOS.

  19. Space applications of the MITS electron-photon Monte Carlo transport code system

    SciTech Connect

    Kensek, R.P.; Lorence, L.J.; Halbleib, J.A.; Morel, J.E.

    1996-07-01

    The MITS multigroup/continuous-energy electron-photon Monte Carlo transport code system has matured to the point that it is capable of addressing more realistic three-dimensional adjoint applications. It is first employed to efficiently predict point doses as a function of source energy for simple three-dimensional experimental geometries exposed to simulated uniform isotropic planar sources of monoenergetic electrons up to 4.0 MeV. Results are in very good agreement with experimental data. It is then used to efficiently simulate dose to a detector in a subsystem of a GPS satellite due to its natural electron environment, employing a relatively complex model of the satellite. The capability for survivability analysis of space systems is demonstrated, and results are obtained with and without variance reduction.

  20. CAD-Based Monte Carlo Neutron Transport KSTAR Analysis for KSTAR

    NASA Astrophysics Data System (ADS)

    Seo, Geon Ho; Choi, Sung Hoon; Shim, Hyung Jin

    2017-09-01

    The Monte Carlo (MC) neutron transport analysis for a complex nuclear system such as fusion facility may require accurate modeling of its complicated geometry. In order to take advantage of modeling capability of the computer aided design (CAD) system for the MC neutronics analysis, the Seoul National University MC code, McCARD, has been augmented with a CAD-based geometry processing module by imbedding the OpenCASCADE CAD kernel. In the developed module, the CAD geometry data are internally converted to the constructive solid geometry model with help of the CAD kernel. An efficient cell-searching algorithm is devised for the void space treatment. The performance of the CAD-based McCARD calculations are tested for the Korea Superconducting Tokamak Advanced Research device by comparing with results of the conventional MC calculations using a text-based geometry input.

  1. Monte Carlo Simulations of Charge Transport in 2D Organic Photovoltaics.

    PubMed

    Gagorik, Adam G; Mohin, Jacob W; Kowalewski, Tomasz; Hutchison, Geoffrey R

    2013-01-03

    The effect of morphology on charge transport in organic photovoltaics is assessed using Monte Carlo. In isotopic two-phase morphologies, increasing the domain size from 6.3 to 18.3 nm improves the fill factor by 11.6%, a result of decreased tortuosity and relaxation of Coulombic barriers. Additionally, when small aggregates of electron acceptors are interdispersed into the electron donor phase, charged defects form in the system, reducing fill factors by 23.3% on average, compared with systems without aggregates. In contrast, systems with idealized connectivity show a 3.31% decrease in fill factor when domain size was increased from 4 to 64 nm. We attribute this to a decreased rate of exciton separation at donor-acceptor interfaces. Finally, we notice that the presence of Coulomb interactions increases device performance as devices become smaller. The results suggest that for commonly found isotropic morphologies the Coulomb interactions between charge carriers dominates exciton separation effects.

  2. Accelerating execution of the integrated TIGER series Monte Carlo radiation transport codes

    SciTech Connect

    Smith, L.M.; Hochstedler, R.D.

    1997-02-01

    Execution of the integrated TIGER series (ITS) of coupled electron/photon Monte Carlo radiation transport codes has been accelerated by modifying the FORTRAN source code for more efficient computation. Each member code of ITS was benchmarked and profiled with a specific test case that directed the acceleration effort toward the most computationally intensive subroutines. Techniques for accelerating these subroutines included replacing linear search algorithms with binary versions, replacing the pseudo-random number generator, reducing program memory allocation, and proofing the input files for geometrical redundancies. All techniques produced identical or statistically similar results to the original code. Final benchmark timing of the accelerated code resulted in speed-up factors of 2.00 for TIGER (the one-dimensional slab geometry code), 1.74 for CYLTRAN (the two-dimensional cylindrical geometry code), and 1.90 for ACCEPT (the arbitrary three-dimensional geometry code).

  3. penORNL: a parallel Monte Carlo photon and electron transport package using PENELOPE

    SciTech Connect

    Bekar, Kursat B.; Miller, Thomas Martin; Patton, Bruce W.; Weber, Charles F.

    2015-01-01

    The parallel Monte Carlo photon and electron transport code package penORNL was developed at Oak Ridge National Laboratory to enable advanced scanning electron microscope (SEM) simulations on high-performance computing systems. This paper discusses the implementations, capabilities and parallel performance of the new code package. penORNL uses PENELOPE for its physics calculations and provides all available PENELOPE features to the users, as well as some new features including source definitions specifically developed for SEM simulations, a pulse-height tally capability for detailed simulations of gamma and x-ray detectors, and a modified interaction forcing mechanism to enable accurate energy deposition calculations. The parallel performance of penORNL was extensively tested with several model problems, and very good linear parallel scaling was observed with up to 512 processors. penORNL, along with its new features, will be available for SEM simulations upon completion of the new pulse-height tally implementation.

  4. Massively parallel kinetic Monte Carlo simulations of charge carrier transport in organic semiconductors

    NASA Astrophysics Data System (ADS)

    van der Kaap, N. J.; Koster, L. J. A.

    2016-02-01

    A parallel, lattice based Kinetic Monte Carlo simulation is developed that runs on a GPGPU board and includes Coulomb like particle-particle interactions. The performance of this computationally expensive problem is improved by modifying the interaction potential due to nearby particle moves, instead of fully recalculating it. This modification is achieved by adding dipole correction terms that represent the particle move. Exact evaluation of these terms is guaranteed by representing all interactions as 32-bit floating numbers, where only the integers between -222 and 222 are used. We validate our method by modelling the charge transport in disordered organic semiconductors, including Coulomb interactions between charges. Performance is mainly governed by the particle density in the simulation volume, and improves for increasing densities. Our method allows calculations on large volumes including particle-particle interactions, which is important in the field of organic semiconductors.

  5. Towards scalable parellelism in Monte Carlo particle transport codes using remote memory access

    SciTech Connect

    Romano, Paul K; Brown, Forrest B; Forget, Benoit

    2010-01-01

    One forthcoming challenge in the area of high-performance computing is having the ability to run large-scale problems while coping with less memory per compute node. In this work, they investigate a novel data decomposition method that would allow Monte Carlo transport calculations to be performed on systems with limited memory per compute node. In this method, each compute node remotely retrieves a small set of geometry and cross-section data as needed and remotely accumulates local tallies when crossing the boundary of the local spatial domain. initial results demonstrate that while the method does allow large problems to be run in a memory-limited environment, achieving scalability may be difficult due to inefficiencies in the current implementation of RMA operations.

  6. Domain Decomposition of a Constructive Solid Geometry Monte Carlo Transport Code

    SciTech Connect

    O'Brien, M J; Joy, K I; Procassini, R J; Greenman, G M

    2008-12-07

    Domain decomposition has been implemented in a Constructive Solid Geometry (CSG) Monte Carlo neutron transport code. Previous methods to parallelize a CSG code relied entirely on particle parallelism; but in our approach we distribute the geometry as well as the particles across processors. This enables calculations whose geometric description is larger than what could fit in memory of a single processor, thus it must be distributed across processors. In addition to enabling very large calculations, we show that domain decomposition can speed up calculations compared to particle parallelism alone. We also show results of a calculation of the proposed Laser Inertial-Confinement Fusion-Fission Energy (LIFE) facility, which has 5.6 million CSG parts.

  7. Analysis of Light Transport Features in Stone Fruits Using Monte Carlo Simulation

    PubMed Central

    Ding, Chizhu; Shi, Shuning; Chen, Jianjun; Wei, Wei; Tan, Zuojun

    2015-01-01

    The propagation of light in stone fruit tissue was modeled using the Monte Carlo (MC) method. Peaches were used as the representative model of stone fruits. The effects of the fruit core and the skin on light transport features in the peaches were assessed. It is suggested that the skin, flesh and core should be separately considered with different parameters to accurately simulate light propagation in intact stone fruit. The detection efficiency was evaluated by the percentage of effective photons and the detection sensitivity of the flesh tissue. The fruit skin decreases the detection efficiency, especially in the region close to the incident point. The choices of the source-detector distance, detection angle and source intensity were discussed. Accurate MC simulations may result in better insight into light propagation in stone fruit and aid in achieving the optimal fruit quality inspection without extensive experimental measurements. PMID:26469695

  8. Monte Carlo particle transport in random media: The effects of mixing statistics

    NASA Astrophysics Data System (ADS)

    Larmier, Coline; Zoia, Andrea; Malvagi, Fausto; Dumonteil, Eric; Mazzolo, Alain

    2017-07-01

    Particle transport in random media obeying a given mixing statistics is key in several applications in nuclear reactor physics and more generally in diffusion phenomena emerging in optics and life sciences. Exact solutions for the ensemble-averaged physical observables are hardly available, and several approximate models have been thus developed, providing a compromise between the accurate treatment of the disorder-induced spatial correlations and the computational time. In order to validate these models, it is mandatory to use reference solutions in benchmark configurations, typically obtained by explicitly generating by Monte Carlo methods several realizations of random media, simulating particle transport in each realization, and finally taking the ensemble averages for the quantities of interest. In this context, intense research efforts have been devoted to Poisson (Markov) mixing statistics, where benchmark solutions have been derived for transport in one-dimensional geometries. In a recent work, we have generalized these solutions to two and three-dimensional configurations, and shown how dimension affects the simulation results. In this paper we will examine the impact of mixing statistics: to this aim, we will compare the reflection and transmission probabilities, as well as the particle flux, for three-dimensional random media obtained by using Poisson, Voronoi and Box stochastic tessellations. For each tessellation, we will furthermore discuss the effects of varying the fragmentation of the stochastic geometry, the material compositions, and the cross sections of the background materials.

  9. Monte Carlo modeling of transport in PbSe nanocrystal films

    SciTech Connect

    Carbone, I. Carter, S. A.; Zimanyi, G. T.

    2013-11-21

    A Monte Carlo hopping model was developed to simulate electron and hole transport in nanocrystalline PbSe films. Transport is carried out as a series of thermally activated hopping events between neighboring sites on a cubic lattice. Each site, representing an individual nanocrystal, is assigned a size-dependent electronic structure, and the effects of particle size, charging, interparticle coupling, and energetic disorder on electron and hole mobilities were investigated. Results of simulated field-effect measurements confirm that electron mobilities and conductivities at constant carrier densities increase with particle diameter by an order of magnitude up to 5 nm and begin to decrease above 6 nm. We find that as particle size increases, fewer hops are required to traverse the same distance and that site energy disorder significantly inhibits transport in films composed of smaller nanoparticles. The dip in mobilities and conductivities at larger particle sizes can be explained by a decrease in tunneling amplitudes and by charging penalties that are incurred more frequently when carriers are confined to fewer, larger nanoparticles. Using a nearly identical set of parameter values as the electron simulations, hole mobility simulations confirm measurements that increase monotonically with particle size over two orders of magnitude.

  10. Cartesian Meshing Impacts for PWR Assemblies in Multigroup Monte Carlo and Sn Transport

    NASA Astrophysics Data System (ADS)

    Manalo, K.; Chin, M.; Sjoden, G.

    2014-06-01

    Hybrid methods of neutron transport have increased greatly in use, for example, in applications of using both Monte Carlo and deterministic transport to calculate quantities of interest, such as flux and eigenvalue in a nuclear reactor. Many 3D parallel Sn codes apply a Cartesian mesh, and thus for nuclear reactors the representation of curved fuels (cylinder, sphere, etc.) are impacted in the representation of proper fuel inventory (both in deviation of mass and exact geometry representation). For a PWR assembly eigenvalue problem, we explore the errors associated with this Cartesian discrete mesh representation, and perform an analysis to calculate a slope parameter that relates the pcm to the percent areal/volumetric deviation (areal corresponds to 2D and volumetric to 3D, respectively). Our initial analysis demonstrates a linear relationship between pcm change and areal/volumetric deviation using Multigroup MCNP on a PWR assembly compared to a reference exact combinatorial MCNP geometry calculation. For the same multigroup problems, we also intend to characterize this linear relationship in discrete ordinates (3D PENTRAN) and discuss issues related to transport cross-comparison. In addition, we discuss auto-conversion techniques with our 3D Cartesian mesh generation tools to allow for full generation of MCNP5 inputs (Cartesian mesh and Multigroup XS) from a basis PENTRAN Sn model.

  11. MCNPX Monte Carlo simulations of particle transport in SiC semiconductor detectors of fast neutrons

    NASA Astrophysics Data System (ADS)

    Sedlačková, K.; Zat'ko, B.; Šagátová, A.; Pavlovič, M.; Nečas, V.; Stacho, M.

    2014-05-01

    The aim of this paper was to investigate particle transport properties of a fast neutron detector based on silicon carbide. MCNPX (Monte Carlo N-Particle eXtended) code was used in our study because it allows seamless particle transport, thus not only interacting neutrons can be inspected but also secondary particles can be banked for subsequent transport. Modelling of the fast-neutron response of a SiC detector was carried out for fast neutrons produced by 239Pu-Be source with the mean energy of about 4.3 MeV. Using the MCNPX code, the following quantities have been calculated: secondary particle flux densities, reaction rates of elastic/inelastic scattering and other nuclear reactions, distribution of residual ions, deposited energy and energy distribution of pulses. The values of reaction rates calculated for different types of reactions and resulting energy deposition values showed that the incident neutrons transfer part of the carried energy predominantly via elastic scattering on silicon and carbon atoms. Other fast-neutron induced reactions include inelastic scattering and nuclear reactions followed by production of α-particles and protons. Silicon and carbon recoil atoms, α-particles and protons are charged particles which contribute to the detector response. It was demonstrated that although the bare SiC material can register fast neutrons directly, its detection efficiency can be enlarged if it is covered by an appropriate conversion layer. Comparison of the simulation results with experimental data was successfully accomplished.

  12. Monte Carlo simulation of non-conservative positron transport in pure argon

    NASA Astrophysics Data System (ADS)

    Šuvakov, M.; Petrović, Z. Lj; Marler, J. P.; Buckman, S. J.; Robson, R. E.; Malović, G.

    2008-05-01

    The main aim of this paper is to apply modern phenomenology and accurate Monte Carlo simulation techniques to obtain the same level of understanding of positron transport as has been achieved for electrons. To this end, a reasonably complete set of cross sections for low energy positron scattering in argon has been used to calculate transport coefficients of low energy positrons in pure argon gas subject to an electrostatic field. We have analyzed the main features of these coefficients and have compared the calculated values with those for electrons in the same gas. The particular focus is on the influence of the non-conservative nature of positronium formation. This effect is substantial, generally speaking much larger than any comparable effects in electron transport due to attachment and/or ionization. As a result several new phenomena have been observed, such as negative differential conductivity (NDC) in the bulk drift velocity, but with no indication of any NDC for the flux drift velocity. In addition, there is a drastic effect on the bulk longitudinal diffusion coefficient for positrons, which is reduced to almost zero, in contrast to the other components of the diffusion tensor, which have normal values. It is found that the best way of explaining these kinetic phenomena is by sampling real space distributions which reveal drastic modification of the usual Gaussian profile due to pronounced spatial differentiation of the positrons by energy.

  13. ITS Version 6 : the integrated TIGER series of coupled electron/photon Monte Carlo transport codes.

    SciTech Connect

    Franke, Brian Claude; Kensek, Ronald Patrick; Laub, Thomas William

    2008-04-01

    ITS is a powerful and user-friendly software package permitting state-of-the-art Monte Carlo solution of lineartime-independent coupled electron/photon radiation transport problems, with or without the presence of macroscopic electric and magnetic fields of arbitrary spatial dependence. Our goal has been to simultaneously maximize operational simplicity and physical accuracy. Through a set of preprocessor directives, the user selects one of the many ITS codes. The ease with which the makefile system is applied combines with an input scheme based on order-independent descriptive keywords that makes maximum use of defaults and internal error checking to provide experimentalists and theorists alike with a method for the routine but rigorous solution of sophisticated radiation transport problems. Physical rigor is provided by employing accurate cross sections, sampling distributions, and physical models for describing the production and transport of the electron/photon cascade from 1.0 GeV down to 1.0 keV. The availability of source code permits the more sophisticated user to tailor the codes to specific applications and to extend the capabilities of the codes to more complex applications. Version 6, the latest version of ITS, contains (1) improvements to the ITS 5.0 codes, and (2) conversion to Fortran 90. The general user friendliness of the software has been enhanced through memory allocation to reduce the need for users to modify and recompile the code.

  14. Modeling parameterized geometry in GPU-based Monte Carlo particle transport simulation for radiotherapy.

    PubMed

    Chi, Yujie; Tian, Zhen; Jia, Xun

    2016-08-07

    Monte Carlo (MC) particle transport simulation on a graphics-processing unit (GPU) platform has been extensively studied recently due to the efficiency advantage achieved via massive parallelization. Almost all of the existing GPU-based MC packages were developed for voxelized geometry. This limited application scope of these packages. The purpose of this paper is to develop a module to model parametric geometry and integrate it in GPU-based MC simulations. In our module, each continuous region was defined by its bounding surfaces that were parameterized by quadratic functions. Particle navigation functions in this geometry were developed. The module was incorporated to two previously developed GPU-based MC packages and was tested in two example problems: (1) low energy photon transport simulation in a brachytherapy case with a shielded cylinder applicator and (2) MeV coupled photon/electron transport simulation in a phantom containing several inserts of different shapes. In both cases, the calculated dose distributions agreed well with those calculated in the corresponding voxelized geometry. The averaged dose differences were 1.03% and 0.29%, respectively. We also used the developed package to perform simulations of a Varian VS 2000 brachytherapy source and generated a phase-space file. The computation time under the parameterized geometry depended on the memory location storing the geometry data. When the data was stored in GPU's shared memory, the highest computational speed was achieved. Incorporation of parameterized geometry yielded a computation time that was ~3 times of that in the corresponding voxelized geometry. We also developed a strategy to use an auxiliary index array to reduce frequency of geometry calculations and hence improve efficiency. With this strategy, the computational time ranged in 1.75-2.03 times of the voxelized geometry for coupled photon/electron transport depending on the voxel dimension of the auxiliary index array, and in 0

  15. Momentum transport near a magnetic X line in collisionless reconnection

    NASA Technical Reports Server (NTRS)

    Cai, H. J.; Ding, D. Q.; Lee, L. C.

    1994-01-01

    Plasma dynamics and momentum transport near an X line during time-dependent magnetic reconnection in a collisionless plasma are investigated based on two-dimensional particle simulations. We find that a weakly skewed velocity distribution is formed near the magnetic X line, leading to the presence of off-diagonal elements of the plasma pressure tensor. Let the reconnection electric field be in the y direction. The gradients of the off-diagonal elements of the pressure tensor can provide a transport of the y momentum. During the normal magnetic reconnection, the momentum transport associated with the off-diagonal terms of the pressure tensor mediates a transfer of the y momentum from the region near the X line to regions outside the X line. A period of 'reverse magnetic reconnection,' during which the plasma kinetic energy is converted into magnetic energy, is also observed in the simulation. When reverse reconnection occurs, the gradients of the off-diagonal pressure tensor elements can mediate a transfer of y momentum into the X line. It is found that the inertial term also plays a significant role in the force balance near the magnetic X line. An explanation for the origin of the off-diagonal pressure terms is also given in this paper.

  16. A Monte Carlo study for the calculation of the average linear energy transfer (LET) distributions for a clinical proton beam line and a radiobiological carbon ion beam line.

    PubMed

    Romano, F; Cirrone, G A P; Cuttone, G; Rosa, F Di; Mazzaglia, S E; Petrovic, I; Fira, A Ristic; Varisano, A

    2014-06-21

    Fluence, depth absorbed dose and linear energy transfer (LET) distributions of proton and carbon ion beams have been investigated using the Monte Carlo code Geant4 (GEometry ANd Tracking). An open source application was developed with the aim to simulate two typical transport beam lines, one used for ocular therapy and cell irradiations with protons and the other for cell irradiations with carbon ions. This tool allows evaluation of the primary and total dose averaged LET and predict their spatial distribution in voxelized or sliced geometries. In order to reproduce the LET distributions in a realistic way, and also the secondary particles' contributions due to nuclear interactions were considered in the computations. Pristine and spread-out Bragg peaks were taken into account both for proton and carbon ion beams, with the maximum energy of 62 MeV/n. Depth dose distributions were compared with experimental data, showing good agreement. Primary and total LET distributions were analysed in order to study the influence of contributions of secondary particles in regions at different depths. A non-negligible influence of high-LET components was found in the entrance channel for proton beams, determining the total dose averaged LET by the factor 3 higher than the primary one. A completely different situation was obtained for carbon ions. In this case, secondary particles mainly contributed in the tail that is after the peak. The results showed how the weight of light and heavy secondary ions can considerably influence the computation of LET depth distributions. This has an important role in the interpretation of results coming from radiobiological experiments and, therefore, in hadron treatment planning procedures.

  17. Transporting hot oil by a new concept in insulated lines

    SciTech Connect

    Matteelli, R.; Brambilla, M.; Pierangeli, P.

    1986-07-01

    Heavy fuel oil, heated to 60/sup 0/C, is transported to the Porto Tolle power plant, near Ravenna, Italy, through an 8-mi, 22-in. insulated pipe line system. The authors tell how Snamprogetti's patented pipe insulation system was used to connect a man-made island in the Adriatic Sea to the power plant.

  18. Particle Transport along Magnetic Null Lines as Sputter or Antihydrogen Source

    NASA Astrophysics Data System (ADS)

    Lane, R. A.; Ordonez, C. A.

    Particle transport along null magnetic lines is investigated using classical trajectory Monte Carlo simulations and described as a traveling wave and through diffusion equations. A magnetic null line is defined as a one-dimensional region where the magnetic field magnitude is zero. This region may take any shape in three-dimensional space. The field used in the simulations is generated by two infinite wires of negligible thickness carrying identical current and separated by a small distance. Thus, an infinite magnetic null line exists directly between the wires. The particle trajectories are simulated by solving the equations of motion for each simulated particle of a mono- energetic set. Each is considered individually, with all trajectories starting from the same position along the null line. Each trajectory is simulated until it reaches a specified distance from the initial point or a maximum time elapses. The simulation is repeated using a full set for multiple endpoints and maximum times for ten different amounts of current in the wires. Each current value is selected so that no particles can travel more than seven times the distance between the wires from the null line. The fraction of particles that reach the endpoint in a given time is calculated and used to describe particle transport parallel to the null line. The results are given in normalized, dimensionless units and their possible applications as an antihydrogen source and use in ultra-high purity sputter are discussed. The results are used to find the conditions necessary to obtain a steady and uniform particle flux suitable for ultra-high purity sputter, assuming that plasma is generated near the null line.

  19. Oxygen transport properties estimation by classical trajectory-direct simulation Monte Carlo

    NASA Astrophysics Data System (ADS)

    Bruno, Domenico; Frezzotti, Aldo; Ghiroldi, Gian Pietro

    2015-05-01

    Coupling direct simulation Monte Carlo (DSMC) simulations with classical trajectory calculations is a powerful tool to improve predictive capabilities of computational dilute gas dynamics. The considerable increase in computational effort outlined in early applications of the method can be compensated by running simulations on massively parallel computers. In particular, Graphics Processing Unit acceleration has been found quite effective in reducing computing time of classical trajectory (CT)-DSMC simulations. The aim of the present work is to study dilute molecular oxygen flows by modeling binary collisions, in the rigid rotor approximation, through an accurate Potential Energy Surface (PES), obtained by molecular beams scattering. The PES accuracy is assessed by calculating molecular oxygen transport properties by different equilibrium and non-equilibrium CT-DSMC based simulations that provide close values of the transport properties. Comparisons with available experimental data are presented and discussed in the temperature range 300-900 K, where vibrational degrees of freedom are expected to play a limited (but not always negligible) role.

  20. Full-dispersion Monte Carlo simulation of phonon transport in micron-sized graphene nanoribbons

    SciTech Connect

    Mei, S. Knezevic, I.; Maurer, L. N.; Aksamija, Z.

    2014-10-28

    We simulate phonon transport in suspended graphene nanoribbons (GNRs) with real-space edges and experimentally relevant widths and lengths (from submicron to hundreds of microns). The full-dispersion phonon Monte Carlo simulation technique, which we describe in detail, involves a stochastic solution to the phonon Boltzmann transport equation with the relevant scattering mechanisms (edge, three-phonon, isotope, and grain boundary scattering) while accounting for the dispersion of all three acoustic phonon branches, calculated from the fourth-nearest-neighbor dynamical matrix. We accurately reproduce the results of several experimental measurements on pure and isotopically modified samples [S. Chen et al., ACS Nano 5, 321 (2011);S. Chen et al., Nature Mater. 11, 203 (2012); X. Xu et al., Nat. Commun. 5, 3689 (2014)]. We capture the ballistic-to-diffusive crossover in wide GNRs: room-temperature thermal conductivity increases with increasing length up to roughly 100 μm, where it saturates at a value of 5800 W/m K. This finding indicates that most experiments are carried out in the quasiballistic rather than the diffusive regime, and we calculate the diffusive upper-limit thermal conductivities up to 600 K. Furthermore, we demonstrate that calculations with isotropic dispersions overestimate the GNR thermal conductivity. Zigzag GNRs have higher thermal conductivity than same-size armchair GNRs, in agreement with atomistic calculations.

  1. Oxygen transport properties estimation by classical trajectory–direct simulation Monte Carlo

    SciTech Connect

    Bruno, Domenico; Frezzotti, Aldo Ghiroldi, Gian Pietro

    2015-05-15

    Coupling direct simulation Monte Carlo (DSMC) simulations with classical trajectory calculations is a powerful tool to improve predictive capabilities of computational dilute gas dynamics. The considerable increase in computational effort outlined in early applications of the method can be compensated by running simulations on massively parallel computers. In particular, Graphics Processing Unit acceleration has been found quite effective in reducing computing time of classical trajectory (CT)-DSMC simulations. The aim of the present work is to study dilute molecular oxygen flows by modeling binary collisions, in the rigid rotor approximation, through an accurate Potential Energy Surface (PES), obtained by molecular beams scattering. The PES accuracy is assessed by calculating molecular oxygen transport properties by different equilibrium and non-equilibrium CT-DSMC based simulations that provide close values of the transport properties. Comparisons with available experimental data are presented and discussed in the temperature range 300–900 K, where vibrational degrees of freedom are expected to play a limited (but not always negligible) role.

  2. A new Monte Carlo program for simulating light transport through Port Wine Stain skin.

    PubMed

    Lister, T; Wright, P A; Chappell, P H

    2014-05-01

    A new Monte Carlo program is presented for simulating light transport through clinically normal skin and skin containing Port Wine Stain (PWS) vessels. The program consists of an eight-layer mathematical skin model constructed from optical coefficients described previously. A simulation including diffuse illumination at the surface and subsequent light transport through the model is carried out using a radiative transfer theory ray-tracing technique. Total reflectance values over 39 wavelengths are scored by the addition of simulated light returning to the surface within a specified region and surface reflections (calculated using Fresnel's equations). These reflectance values are compared to measurements from individual participants, and characteristics of the model are adjusted until adequate agreement is produced between simulated and measured skin reflectance curves. The absorption and scattering coefficients of the epidermis are adjusted through changes in the simulated concentrations and mean diameters of epidermal melanosomes to reproduce non-lesional skin colour. Pseudo-cylindrical horizontal vessels are added to the skin model, and their simulated mean depths, diameters and number densities are adjusted to reproduce measured PWS skin colour. Accurate reproductions of colour measurement data are produced by the program, resulting in realistic predictions of melanin and PWS blood vessel parameters. Using a modest personal computer, the simulation currently requires an average of five and a half days to complete.

  3. A new Monte Carlo code for light transport in biological tissue.

    PubMed

    Torres-García, Eugenio; Oros-Pantoja, Rigoberto; Aranda-Lara, Liliana; Vieyra-Reyes, Patricia

    2017-08-29

    The aim of this work was to develop an event-by-event Monte Carlo code for light transport (called MCLTmx) to identify and quantify ballistic, diffuse, and absorbed photons, as well as their interaction coordinates inside the biological tissue. The mean free path length was computed between two interactions for scattering or absorption processes, and if necessary scatter angles were calculated, until the photon disappeared or went out of region of interest. A three-layer array (air-tissue-air) was used, forming a semi-infinite sandwich. The light source was placed at (0,0,0), emitting towards (0,0,1). The input data were: refractive indices, target thickness (0.02, 0.05, 0.1, 0.5, and 1 cm), number of particle histories, and λ from which the code calculated: anisotropy, scattering, and absorption coefficients. Validation presents differences less than 0.1% compared with that reported in the literature. The MCLTmx code discriminates between ballistic and diffuse photons, and inside of biological tissue, it calculates: specular reflection, diffuse reflection, ballistics transmission, diffuse transmission and absorption, and all parameters dependent on wavelength and thickness. The MCLTmx code can be useful for light transport inside any medium by changing the parameters that describe the new medium: anisotropy, dispersion and attenuation coefficients, and refractive indices for specific wavelength.

  4. Reduced-Order Monte Carlo Modeling of Radiation Transport in Random Media

    NASA Astrophysics Data System (ADS)

    Olson, Aaron

    stochastic collocation (SC), the latter of which takes advantage of the monotonic decay of KL terms. Transport quantities are solved on realizations using Monte Carlo particle transport with Woodcock sampling (WMC). Surrogate models of system responses are constructed from SC solutions using the polynomial chaos expansion (PCE) from which probability density functions (PDFs) of response quantities are constructed. The error convergence of solution methods is examined as a validation of the choice of methods, a verification of method implementation, and to give insight towards parameter selection for efficient computation. Solutions are compared against benchmark values generated in a variety of ways including analytic solutions, computational solutions of simpler models, expensive benchmark computations, and published benchmark values.

  5. Parallel Algorithms for Monte Carlo Particle Transport Simulation on Exascale Computing Architectures

    NASA Astrophysics Data System (ADS)

    Romano, Paul Kollath

    Monte Carlo particle transport methods are being considered as a viable option for high-fidelity simulation of nuclear reactors. While Monte Carlo methods offer several potential advantages over deterministic methods, there are a number of algorithmic shortcomings that would prevent their immediate adoption for full-core analyses. In this thesis, algorithms are proposed both to ameliorate the degradation in parallel efficiency typically observed for large numbers of processors and to offer a means of decomposing large tally data that will be needed for reactor analysis. A nearest-neighbor fission bank algorithm was proposed and subsequently implemented in the OpenMC Monte Carlo code. A theoretical analysis of the communication pattern shows that the expected cost is O( N ) whereas traditional fission bank algorithms are O(N) at best. The algorithm was tested on two supercomputers, the Intrepid Blue Gene/P and the Titan Cray XK7, and demonstrated nearly linear parallel scaling up to 163,840 processor cores on a full-core benchmark problem. An algorithm for reducing network communication arising from tally reduction was analyzed and implemented in OpenMC. The proposed algorithm groups only particle histories on a single processor into batches for tally purposes---in doing so it prevents all network communication for tallies until the very end of the simulation. The algorithm was tested, again on a full-core benchmark, and shown to reduce network communication substantially. A model was developed to predict the impact of load imbalances on the performance of domain decomposed simulations. The analysis demonstrated that load imbalances in domain decomposed simulations arise from two distinct phenomena: non-uniform particle densities and non-uniform spatial leakage. The dominant performance penalty for domain decomposition was shown to come from these physical effects rather than insufficient network bandwidth or high latency. The model predictions were verified with

  6. MONTE CARLO NEUTRINO TRANSPORT THROUGH REMNANT DISKS FROM NEUTRON STAR MERGERS

    SciTech Connect

    Richers, Sherwood; Ott, Christian D.; Kasen, Daniel; Fernández, Rodrigo; O’Connor, Evan

    2015-11-01

    We present Sedonu, a new open source, steady-state, special relativistic Monte Carlo (MC) neutrino transport code, available at bitbucket.org/srichers/sedonu. The code calculates the energy- and angle-dependent neutrino distribution function on fluid backgrounds of any number of spatial dimensions, calculates the rates of change of fluid internal energy and electron fraction, and solves for the equilibrium fluid temperature and electron fraction. We apply this method to snapshots from two-dimensional simulations of accretion disks left behind by binary neutron star mergers, varying the input physics and comparing to the results obtained with a leakage scheme for the cases of a central black hole and a central hypermassive neutron star. Neutrinos are guided away from the densest regions of the disk and escape preferentially around 45° from the equatorial plane. Neutrino heating is strengthened by MC transport a few scale heights above the disk midplane near the innermost stable circular orbit, potentially leading to a stronger neutrino-driven wind. Neutrino cooling in the dense midplane of the disk is stronger when using MC transport, leading to a globally higher cooling rate by a factor of a few and a larger leptonization rate by an order of magnitude. We calculate neutrino pair annihilation rates and estimate that an energy of 2.8 × 10{sup 46} erg is deposited within 45° of the symmetry axis over 300 ms when a central BH is present. Similarly, 1.9 × 10{sup 48} erg is deposited over 3 s when an HMNS sits at the center, but neither estimate is likely to be sufficient to drive a gamma-ray burst jet.

  7. Integrated TIGER Series of Coupled Electron/Photon Monte Carlo Transport Codes System.

    SciTech Connect

    VALDEZ, GREG D.

    2012-11-30

    Version: 00 Distribution is restricted to US Government Agencies and Their Contractors Only. The Integrated Tiger Series (ITS) is a powerful and user-friendly software package permitting state-of-the-art Monte Carlo solution of linear time-independent coupled electron/photon radiation transport problems, with or without the presence of macroscopic electric and magnetic fields of arbitrary spatial dependence. The goal has been to simultaneously maximize operational simplicity and physical accuracy. Through a set of preprocessor directives, the user selects one of the many ITS codes. The ease with which the makefile system is applied combines with an input scheme based on order-independent descriptive keywords that makes maximum use of defaults and internal error checking to provide experimentalists and theorists alike with a method for the routine but rigorous solution of sophisticated radiation transport problems. Physical rigor is provided by employing accurate cross sections, sampling distributions, and physical models for describing the production and transport of the electron/photon cascade from 1.0 GeV down to 1.0 keV. The availability of source code permits the more sophisticated user to tailor the codes to specific applications and to extend the capabilities of the codes to more complex applications. Version 6, the latest version of ITS, contains (1) improvements to the ITS 5.0 codes, and (2) conversion to Fortran 95. The general user friendliness of the software has been enhanced through memory allocation to reduce the need for users to modify and recompile the code.

  8. SHIELD-HIT12A - a Monte Carlo particle transport program for ion therapy research

    NASA Astrophysics Data System (ADS)

    Bassler, N.; Hansen, D. C.; Lühr, A.; Thomsen, B.; Petersen, J. B.; Sobolevsky, N.

    2014-03-01

    Purpose: The Monte Carlo (MC) code SHIELD-HIT simulates the transport of ions through matter. Since SHIELD-HIT08 we added numerous features that improves speed, usability and underlying physics and thereby the user experience. The "-A" fork of SHIELD-HIT also aims to attach SHIELD-HIT to a heavy ion dose optimization algorithm to provide MC-optimized treatment plans that include radiobiology. Methods: SHIELD-HIT12A is written in FORTRAN and carefully retains platform independence. A powerful scoring engine is implemented scoring relevant quantities such as dose and track-average LET. It supports native formats compatible with the heavy ion treatment planning system TRiP. Stopping power files follow ICRU standard and are generated using the libdEdx library, which allows the user to choose from a multitude of stopping power tables. Results: SHIELD-HIT12A runs on Linux and Windows platforms. We experienced that new users quickly learn to use SHIELD-HIT12A and setup new geometries. Contrary to previous versions of SHIELD-HIT, the 12A distribution comes along with easy-to-use example files and an English manual. A new implementation of Vavilov straggling resulted in a massive reduction of computation time. Scheduled for later release are CT import and photon-electron transport. Conclusions: SHIELD-HIT12A is an interesting alternative ion transport engine. Apart from being a flexible particle therapy research tool, it can also serve as a back end for a MC ion treatment planning system. More information about SHIELD-HIT12A and a demo version can be found on http://www.shieldhit.org.

  9. Monte Carlo Neutrino Transport through Remnant Disks from Neutron Star Mergers

    NASA Astrophysics Data System (ADS)

    Richers, Sherwood; Kasen, Daniel; O'Connor, Evan; Fernández, Rodrigo; Ott, Christian D.

    2015-11-01

    We present Sedonu, a new open source, steady-state, special relativistic Monte Carlo (MC) neutrino transport code, available at bitbucket.org/srichers/sedonu. The code calculates the energy- and angle-dependent neutrino distribution function on fluid backgrounds of any number of spatial dimensions, calculates the rates of change of fluid internal energy and electron fraction, and solves for the equilibrium fluid temperature and electron fraction. We apply this method to snapshots from two-dimensional simulations of accretion disks left behind by binary neutron star mergers, varying the input physics and comparing to the results obtained with a leakage scheme for the cases of a central black hole and a central hypermassive neutron star. Neutrinos are guided away from the densest regions of the disk and escape preferentially around 45° from the equatorial plane. Neutrino heating is strengthened by MC transport a few scale heights above the disk midplane near the innermost stable circular orbit, potentially leading to a stronger neutrino-driven wind. Neutrino cooling in the dense midplane of the disk is stronger when using MC transport, leading to a globally higher cooling rate by a factor of a few and a larger leptonization rate by an order of magnitude. We calculate neutrino pair annihilation rates and estimate that an energy of 2.8 × 1046 erg is deposited within 45° of the symmetry axis over 300 ms when a central BH is present. Similarly, 1.9 × 1048 erg is deposited over 3 s when an HMNS sits at the center, but neither estimate is likely to be sufficient to drive a gamma-ray burst jet.

  10. Parallel Monte Carlo transport modeling in the context of a time-dependent, three-dimensional multi-physics code

    SciTech Connect

    Procassini, R.J.

    1997-12-31

    The fine-scale, multi-space resolution that is envisioned for accurate simulations of complex weapons systems in three spatial dimensions implies flop-rate and memory-storage requirements that will only be obtained in the near future through the use of parallel computational techniques. Since the Monte Carlo transport models in these simulations usually stress both of these computational resources, they are prime candidates for parallelization. The MONACO Monte Carlo transport package, which is currently under development at LLNL, will utilize two types of parallelism within the context of a multi-physics design code: decomposition of the spatial domain across processors (spatial parallelism) and distribution of particles in a given spatial subdomain across additional processors (particle parallelism). This implementation of the package will utilize explicit data communication between domains (message passing). Such a parallel implementation of a Monte Carlo transport model will result in non-deterministic communication patterns. The communication of particles between subdomains during a Monte Carlo time step may require a significant level of effort to achieve a high parallel efficiency.

  11. Design of a hybrid computational fluid dynamics-monte carlo radiation transport methodology for radioactive particulate resuspension studies.

    PubMed

    Ali, Fawaz; Waller, Ed

    2014-10-01

    There are numerous scenarios where radioactive particulates can be displaced by external forces. For example, the detonation of a radiological dispersal device in an urban environment will result in the release of radioactive particulates that in turn can be resuspended into the breathing space by external forces such as wind flow in the vicinity of the detonation. A need exists to quantify the internal (due to inhalation) and external radiation doses that are delivered to bystanders; however, current state-of-the-art codes are unable to calculate accurately radiation doses that arise from the resuspension of radioactive particulates in complex topographies. To address this gap, a coupled computational fluid dynamics and Monte Carlo radiation transport approach has been developed. With the aid of particulate injections, the computational fluid dynamics simulation models characterize the resuspension of particulates in a complex urban geometry due to air-flow. The spatial and temporal distributions of these particulates are then used by the Monte Carlo radiation transport simulation to calculate the radiation doses delivered to various points within the simulated domain. A particular resuspension scenario has been modeled using this coupled framework, and the calculated internal (due to inhalation) and external radiation doses have been deemed reasonable. GAMBIT and FLUENT comprise the software suite used to perform the Computational Fluid Dynamics simulations, and Monte Carlo N-Particle eXtended is used to perform the Monte Carlo Radiation Transport simulations.

  12. Parallel domain decomposition methods in fluid models with Monte Carlo transport

    SciTech Connect

    Alme, H.J.; Rodrigues, G.H.; Zimmerman, G.B.

    1996-12-01

    To examine the domain decomposition code coupled Monte Carlo-finite element calculation, it is important to use a domain decomposition that is suitable for the individual models. We have developed a code that simulates a Monte Carlo calculation ( ) on a massively parallel processor. This code is used to examine the load balancing behavior of three domain decomposition ( ) for a Monte Carlo calculation. Results are presented.

  13. 3D Monte Carlo model of optical transport in laser-irradiated cutaneous vascular malformations

    NASA Astrophysics Data System (ADS)

    Majaron, Boris; Milanič, Matija; Jia, Wangcun; Nelson, J. S.

    2010-11-01

    We have developed a three-dimensional Monte Carlo (MC) model of optical transport in skin and applied it to analysis of port wine stain treatment with sequential laser irradiation and intermittent cryogen spray cooling. Our MC model extends the approaches of the popular multi-layer model by Wang et al.1 to three dimensions, thus allowing treatment of skin inclusions with more complex geometries and arbitrary irradiation patterns. To overcome the obvious drawbacks of either "escape" or "mirror" boundary conditions at the lateral boundaries of the finely discretized volume of interest (VOI), photons exiting the VOI are propagated in laterally infinite tissue layers with appropriate optical properties, until they loose all their energy, escape into the air, or return to the VOI, but the energy deposition outside of the VOI is not computed and recorded. After discussing the selection of tissue parameters, we apply the model to analysis of blood photocoagulation and collateral thermal damage in treatment of port wine stain (PWS) lesions with sequential laser irradiation and intermittent cryogen spray cooling.

  14. Monte Carlo simulation of photon transport in a randomly oriented sphere-cylinder scattering medium

    NASA Astrophysics Data System (ADS)

    Linder, T.; Löfqvist, T.

    2011-11-01

    A Monte Carlo simulation tool for simulating photon transport in a randomly oriented sphere-cylinder medium has been developed. The simulated medium represents a paper pulp suspension where the constituents are assumed to be mono-disperse micro-spheres, representing dispersed fiber fragments, and infinitely long, straight, randomly oriented cylinders representing fibers. The diameter of the micro-spheres is considered to be about the order of the wavelength and is described by Mie scattering theory. The fiber diameter is considerably larger than the wavelength and the photon scattering is therefore determined by an analytical solution of Maxwell's equation for scattering at an infinitely long cylinder. By employing a Stokes-Mueller formalism, the software tracks the polarization of the light while propagating through the medium. The effects of varying volume concentrations and sizes of the scattering components on reflection, transmission and polarization of the incident light are investigated. It is shown that not only the size but also the shape of the particles has a big impact on the depolarization.

  15. Monte Carlo simulation of radiation transport in human skin with rigorous treatment of curved tissue boundaries.

    PubMed

    Majaron, Boris; Milanič, Matija; Premru, Jan

    2015-01-01

    In three-dimensional (3-D) modeling of light transport in heterogeneous biological structures using the Monte Carlo (MC) approach, space is commonly discretized into optically homogeneous voxels by a rectangular spatial grid. Any round or oblique boundaries between neighboring tissues thus become serrated, which raises legitimate concerns about the realism of modeling results with regard to reflection and refraction of light on such boundaries. We analyze the related effects by systematic comparison with an augmented 3-D MC code, in which analytically defined tissue boundaries are treated in a rigorous manner. At specific locations within our test geometries, energy deposition predicted by the two models can vary by 10%. Even highly relevant integral quantities, such as linear density of the energy absorbed by modeled blood vessels, differ by up to 30%. Most notably, the values predicted by the customary model vary strongly and quite erratically with the spatial discretization step and upon minor repositioning of the computational grid. Meanwhile, the augmented model shows no such unphysical behavior. Artifacts of the former approach do not converge toward zero with ever finer spatial discretization, confirming that it suffers from inherent deficiencies due to inaccurate treatment of reflection and refraction at round tissue boundaries.

  16. Kinetic Monte Carlo (KMC) simulation of fission product silver transport through TRISO fuel particle

    NASA Astrophysics Data System (ADS)

    de Bellefon, G. M.; Wirth, B. D.

    2011-06-01

    A mesoscale kinetic Monte Carlo (KMC) model developed to investigate the diffusion of silver through the pyrolytic carbon and silicon carbide containment layers of a TRISO fuel particle is described. The release of radioactive silver from TRISO particles has been studied for nearly three decades, yet the mechanisms governing silver transport are not fully understood. This model atomically resolves Ag, but provides a mesoscale medium of carbon and silicon carbide, which can include a variety of defects including grain boundaries, reflective interfaces, cracks, and radiation-induced cavities that can either accelerate silver diffusion or slow diffusion by acting as traps for silver. The key input parameters to the model (diffusion coefficients, trap binding energies, interface characteristics) are determined from available experimental data, or parametrically varied, until more precise values become available from lower length scale modeling or experiment. The predicted results, in terms of the time/temperature dependence of silver release during post-irradiation annealing and the variability of silver release from particle to particle have been compared to available experimental data from the German HTR Fuel Program ( Gontard and Nabielek [1]) and Minato and co-workers ( Minato et al. [2]).

  17. Detailed Monte Carlo Simulation of electron transport and electron energy loss spectra.

    PubMed

    Attarian Shandiz, M; Salvat, F; Gauvin, R

    2016-11-01

    A computer program for detailed Monte Carlo simulation of the transport of electrons with kinetic energies in the range between about 0.1 and about 500 keV in bulk materials and in thin solid films is presented. Elastic scattering is described from differential cross sections calculated by the relativistic (Dirac) partial-wave expansion method with different models of the scattering potential. Inelastic interactions are simulated from an optical-data model based on an empirical optical oscillator strength that combines optical functions of the solid with atomic photoelectric data. The generalized oscillator strength is built from the adopted optical oscillator strength by using an extension algorithm derived from Lindhard's dielectric function for a free-electron gas. It is shown that simulated backscattering fractions of electron beams from bulk (semi-infinite) specimens are in good agreement with experimental data for beam energies from 0.1 keV up to about 100 keV. Simulations also yield transmitted and backscattered fractions of electron beams on thin solid films that agree closely with measurements for different film thicknesses and incidence angles. Simulated most probable deflection angles and depth-dose distributions also agree satisfactorily with measurements. Finally, electron energy loss spectra of several elemental solids are simulated and the effects of the beam energy and the foil thickness on the signal to background and signal to noise ratios are investigated. SCANNING 38:475-491, 2016. © 2015 Wiley Periodicals, Inc.

  18. Code System for Monte Carlo Simulation of Electron and Photon Transport.

    SciTech Connect

    2015-07-01

    Version 01 PENELOPE performs Monte Carlo simulation of coupled electron-photon transport in arbitrary materials and complex quadric geometries. A mixed procedure is used for the simulation of electron and positron interactions (elastic scattering, inelastic scattering and bremsstrahlung emission), in which ‘hard’ events (i.e. those with deflection angle and/or energy loss larger than pre-selected cutoffs) are simulated in a detailed way, while ‘soft’ interactions are calculated from multiple scattering approaches. Photon interactions (Rayleigh scattering, Compton scattering, photoelectric effect and electron-positron pair production) and positron annihilation are simulated in a detailed way. PENELOPE reads the required physical information about each material (which includes tables of physical properties, interaction cross sections, relaxation data, etc.) from the input material data file. The material data file is created by means of the auxiliary program MATERIAL, which extracts atomic interaction data from the database of ASCII files. PENELOPE mailing list archives and additional information about the code can be found at http://www.nea.fr/lists/penelope.html. See Abstract for additional features.

  19. Parallel Monte Carlo Electron and Photon Transport Simulation Code (PMCEPT code)

    NASA Astrophysics Data System (ADS)

    Kum, Oyeon

    2004-11-01

    Simulations for customized cancer radiation treatment planning for each patient are very useful for both patient and doctor. These simulations can be used to find the most effective treatment with the least possible dose to the patient. This typical system, so called ``Doctor by Information Technology", will be useful to provide high quality medical services everywhere. However, the large amount of computing time required by the well-known general purpose Monte Carlo(MC) codes has prevented their use for routine dose distribution calculations for a customized radiation treatment planning. The optimal solution to provide ``accurate" dose distribution within an ``acceptable" time limit is to develop a parallel simulation algorithm on a beowulf PC cluster because it is the most accurate, efficient, and economic. I developed parallel MC electron and photon transport simulation code based on the standard MPI message passing interface. This algorithm solved the main difficulty of the parallel MC simulation (overlapped random number series in the different processors) using multiple random number seeds. The parallel results agreed well with the serial ones. The parallel efficiency approached 100% as was expected.

  20. Electronic transport of bilayer graphene with asymmetry line defects

    NASA Astrophysics Data System (ADS)

    Zhao, Xiao-Ming; Wu, Ya-Jie; Chen, Chan; Liang, Ying; Kou, Su-Peng

    2016-11-01

    In this paper, we study the quantum properties of a bilayer graphene with (asymmetry) line defects. The localized states are found around the line defects. Thus, the line defects on one certain layer of the bilayer graphene can lead to an electric transport channel. By adding a bias potential along the direction of the line defects, we calculate the electric conductivity of bilayer graphene with line defects using the Landauer-Büttiker theory, and show that the channel affects the electric conductivity remarkably by comparing the results with those in a perfect bilayer graphene. This one-dimensional line electric channel has the potential to be applied in nanotechnology engineering. Project supported by the National Basic Research Program of China (Grant Nos. 2011CB921803 and 2012CB921704), the National Natural Science Foundation of China (Grant Nos. 11174035, 11474025, 11504285, and 11404090), the Specialized Research Fund for the Doctoral Program of Higher Education, China, the Fundamental Research Funds for the Central Universities, China, the Scientific Research Program Fund of the Shaanxi Provincial Education Department, China (Grant No. 15JK1363), and the Young Talent Fund of University Association for Science and Technology in Shaanxi Province, China.

  1. Monte Carlo approaches to sampling forested tracts with lines or points

    Treesearch

    Harry T. Valentine; Jeffrey H. Gove; Timothy G. Gregoire

    2001-01-01

    Several line- and point-based sampling methods can be employed to estimate the aggregate dimensions of trees standing on a forested tract or pieces of coarse woody debris lying on the forest floor. Line methods include line intersect sampling, horizontal line sampling, and transect relascope sampling; point methods include variable- and fixed-radius plot sampling, and...

  2. Kinetic Monte Carlo Model of Charge Transport in Hematite (α-Fe2O3)

    SciTech Connect

    Kerisit, Sebastien N.; Rosso, Kevin M.

    2007-09-28

    The mobility of electrons injected into iron oxide minerals via abiotic and biotic electron-transfer processes is one of the key factors that control the reductive dissolution of such minerals. Building upon our previous work on the computational modeling of elementary electron transfer reactions in iron oxide minerals using ab initio electronic structure calculations and parameterized molecular dynamics simulations, we have developed and implemented a kinetic Monte Carlo model of charge transport in hematite that integrates previous findings. The model aims to simulate the interplay between electron transfer processes for extended periods of time in lattices of increasing complexity. The electron transfer reactions considered here involve the II/III valence interchange between nearest-neighbor iron atoms via a small polaron hopping mechanism. The temperature dependence and anisotropic behavior of the electrical conductivity as predicted by our model are in good agreement with experimental data on hematite single crystals. In addition, we characterize the effect of electron polaron concentration and that of a range of defects on the electron mobility. Interaction potentials between electron polarons and fixed defects (iron substitution by divalent, tetravalent, and isovalent ions and iron and oxygen vacancies) are determined from atomistic simulations, based on the same model used to derive the electron transfer parameters, and show little deviation from the Coulombic interaction energy. Integration of the interaction potentials in the kinetic Monte Carlo simulations allows the electron polaron diffusion coefficient and density and residence time around defect sites to be determined as a function of polaron concentration in the presence of repulsive and attractive defects. The decrease in diffusion coefficient with polaron concentration follows a logarithmic function up to the highest concentration considered, i.e., ~2% of iron(III) sites, whereas the presence of

  3. Kinetic Monte Carlo model of charge transport in hematite (α-Fe2O3)

    NASA Astrophysics Data System (ADS)

    Kerisit, Sebastien; Rosso, Kevin M.

    2007-09-01

    The mobility of electrons injected into iron oxide minerals via abiotic and biotic electron transfer processes is one of the key factors that control the reductive dissolution of such minerals. Building upon our previous work on the computational modeling of elementary electron transfer reactions in iron oxide minerals using ab initio electronic structure calculations and parametrized molecular dynamics simulations, we have developed and implemented a kinetic Monte Carlo model of charge transport in hematite that integrates previous findings. The model aims to simulate the interplay between electron transfer processes for extended periods of time in lattices of increasing complexity. The electron transfer reactions considered here involve the II/III valence interchange between nearest-neighbor iron atoms via a small polaron hopping mechanism. The temperature dependence and anisotropic behavior of the electrical conductivity as predicted by our model are in good agreement with experimental data on hematite single crystals. In addition, we characterize the effect of electron polaron concentration and that of a range of defects on the electron mobility. Interaction potentials between electron polarons and fixed defects (iron substitution by divalent, tetravalent, and isovalent ions and iron and oxygen vacancies) are determined from atomistic simulations, based on the same model used to derive the electron transfer parameters, and show little deviation from the Coulombic interaction energy. Integration of the interaction potentials in the kinetic Monte Carlo simulations allows the electron polaron diffusion coefficient and density and residence time around defect sites to be determined as a function of polaron concentration in the presence of repulsive and attractive defects. The decrease in diffusion coefficient with polaron concentration follows a logarithmic function up to the highest concentration considered, i.e., ˜2% of iron(III) sites, whereas the presence of

  4. Transportation Lines on the Great Lakes System; Transportation Series 3; 1980.

    DTIC Science & Technology

    1982-05-01

    AD-A121 620 TRANSPORTATION LINE ON THE MEAT. LAMBS SYSTlEM f/l TRANSPORTATION’IES 3; 108(U) CORPS OF EHEERgeS FORT SELVOIR VA WATER RESORCES SUPPORT...different hem Controllti Office) IS. SECURITY CLASS. (of tis report) Water Resources Support Center Data Collection Management Division Unclassified...from: National Technical Information Service (NTIS) 5285 Port Royal Road Springfield, Va. 22161 19. KEY WORDS (Cstinue an revere. de It necesar7 amd

  5. Self-consistent modelling of line-driven hot-star winds with Monte Carlo radiation hydrodynamics

    NASA Astrophysics Data System (ADS)

    Noebauer, U. M.; Sim, S. A.

    2015-11-01

    Radiative pressure exerted by line interactions is a prominent driver of outflows in astrophysical systems, being at work in the outflows emerging from hot stars or from the accretion discs of cataclysmic variables, massive young stars and active galactic nuclei. In this work, a new radiation hydrodynamical approach to model line-driven hot-star winds is presented. By coupling a Monte Carlo radiative transfer scheme with a finite volume fluid dynamical method, line-driven mass outflows may be modelled self-consistently, benefiting from the advantages of Monte Carlo techniques in treating multiline effects, such as multiple scatterings, and in dealing with arbitrary multidimensional configurations. In this work, we introduce our approach in detail by highlighting the key numerical techniques and verifying their operation in a number of simplified applications, specifically in a series of self-consistent, one-dimensional, Sobolev-type, hot-star wind calculations. The utility and accuracy of our approach are demonstrated by comparing the obtained results with the predictions of various formulations of the so-called CAK theory and by confronting the calculations with modern sophisticated techniques of predicting the wind structure. Using these calculations, we also point out some useful diagnostic capabilities our approach provides. Finally, we discuss some of the current limitations of our method, some possible extensions and potential future applications.

  6. A CUMULATIVE MIGRATION METHOD FOR COMPUTING RIGOROUS TRANSPORT CROSS SECTIONS AND DIFFUSION COEFFICIENTS FOR LWR LATTICES WITH MONTE CARLO

    SciTech Connect

    Zhaoyuan Liu; Kord Smith; Benoit Forget; Javier Ortensi

    2016-05-01

    A new method for computing homogenized assembly neutron transport cross sections and dif- fusion coefficients that is both rigorous and computationally efficient is proposed in this paper. In the limit of a homogeneous hydrogen slab, the new method is equivalent to the long-used, and only-recently-published CASMO transport method. The rigorous method is used to demonstrate the sources of inaccuracy in the commonly applied “out-scatter” transport correction. It is also demonstrated that the newly developed method is directly applicable to lattice calculations per- formed by Monte Carlo and is capable of computing rigorous homogenized transport cross sections for arbitrarily heterogeneous lattices. Comparisons of several common transport cross section ap- proximations are presented for a simple problem of infinite medium hydrogen. The new method has also been applied in computing 2-group diffusion data for an actual PWR lattice from BEAVRS benchmark.

  7. Neutrino transport in type II supernovae: Boltzmann solver vs. Monte Carlo method

    NASA Astrophysics Data System (ADS)

    Yamada, Shoichi; Janka, Hans-Thomas; Suzuki, Hideyuki

    1999-04-01

    We have coded a Boltzmann solver based on a finite difference scheme (S_N method) aiming at calculations of neutrino transport in type II supernovae. Close comparison between the Boltzmann solver and a Monte Carlo transport code has been made for realistic atmospheres of post bounce core models under the assumption of a static background. We have also investigated in detail the dependence of the results on the numbers of radial, angular, and energy grid points and the way to discretize the spatial advection term which is used in the Boltzmann solver. A general relativistic calculation has been done for one of the models. We find good overall agreement between the two methods. This gives credibility to both methods which are based on completely different formulations. In particular, the number and energy fluxes and the mean energies of the neutrinos show remarkably good agreement, because these quantities are determined in a region where the angular distribution of the neutrinos is nearly isotropic and they are essentially frozen in later on. On the other hand, because of a relatively small number of angular grid points (which is inevitable due to limitations of the computation time) the Boltzmann solver tends to slightly underestimate the flux factor and the Eddington factor outside the (mean) ``neutrinosphere'' where the angular distribution of the neutrinos becomes highly anisotropic. As a result, the neutrino number (and energy) density is somewhat overestimated in this region. This fact suggests that the Boltzmann solver should be applied to calculations of the neutrino heating in the hot-bubble region with some caution because there might be a tendency to overestimate the energy deposition rate in disadvantageous situations. A comparison shows that this trend is opposite to the results obtained with a multi-group flux-limited diffusion approximation of neutrino transport. Employing three different flux limiters, we find that all of them lead to a significant

  8. Gibberellin Concentration and Transport in Genetic Lines of Pea 1

    PubMed Central

    Proebsting, William M.; Hedden, Peter; Lewis, Mervyn J.; Croker, Stephen J.; Proebsting, Lena N.

    1992-01-01

    Effects of the Na and Le loci on gibberellin (GA) content and transport in pea (Pisum sativum L.) shoots were studied. GA1, GA8, GA17, GA19, GA20, GA29, GA44, GA8 catabolite, and GA29 catabolite were identified by full-scan gas chromatography-mass spectrometry in extracts of expanding and fully expanded tissues of line C79-338 (Na Le). Quantification of GAs by gas chromatography-single-ion monitoring using deuterated internal standards in lines differing at the Na and Le alleles showed that na reduced the contents of GA19, GA20, and GA29 on average to <3% and of GA1 and GA8 to <30% of those in corresponding Na lines. In expanding tissues from Na le lines, GA1 and GA8 concentrations were reduced to approximately 10 and 2%, respectively, and GA29 content increased 2- to 3-fold compared with those in Na Le plants. There was a close correlation between stem length and the concentrations of GA1 or GA8 in shoot apices in all six genotypes investigated. In na/Na grafts, internode length and GA1 concentration of nana scions were normalized, the GA20 content increased slightly, but GA19 levels were unaffected. Movement of labeled GAs applied to leaves on Na rootstocks indicated that GA19 was transported poorly to apices of na scions compared with GA20 and GA1. Our evidence suggests that GA20 is the major transported GA in peas. Images Figure 2 PMID:16653128

  9. Qualitative Simulation of Photon Transport in Free Space Based on Monte Carlo Method and Its Parallel Implementation

    PubMed Central

    Chen, Xueli; Gao, Xinbo; Qu, Xiaochao; Chen, Duofang; Ma, Bin; Wang, Lin; Peng, Kuan; Liang, Jimin; Tian, Jie

    2010-01-01

    During the past decade, Monte Carlo method has obtained wide applications in optical imaging to simulate photon transport process inside tissues. However, this method has not been effectively extended to the simulation of free-space photon transport at present. In this paper, a uniform framework for noncontact optical imaging is proposed based on Monte Carlo method, which consists of the simulation of photon transport both in tissues and in free space. Specifically, the simplification theory of lens system is utilized to model the camera lens equipped in the optical imaging system, and Monte Carlo method is employed to describe the energy transformation from the tissue surface to the CCD camera. Also, the focusing effect of camera lens is considered to establish the relationship of corresponding points between tissue surface and CCD camera. Furthermore, a parallel version of the framework is realized, making the simulation much more convenient and effective. The feasibility of the uniform framework and the effectiveness of the parallel version are demonstrated with a cylindrical phantom based on real experimental results. PMID:20689705

  10. Accelerating Monte Carlo simulations of photon transport in a voxelized geometry using a massively parallel graphics processing unit.

    PubMed

    Badal, Andreu; Badano, Aldo

    2009-11-01

    It is a known fact that Monte Carlo simulations of radiation transport are computationally intensive and may require long computing times. The authors introduce a new paradigm for the acceleration of Monte Carlo simulations: The use of a graphics processing unit (GPU) as the main computing device instead of a central processing unit (CPU). A GPU-based Monte Carlo code that simulates photon transport in a voxelized geometry with the accurate physics models from PENELOPE has been developed using the CUDATM programming model (NVIDIA Corporation, Santa Clara, CA). An outline of the new code and a sample x-ray imaging simulation with an anthropomorphic phantom are presented. A remarkable 27-fold speed up factor was obtained using a GPU compared to a single core CPU. The reported results show that GPUs are currently a good alternative to CPUs for the simulation of radiation transport. Since the performance of GPUs is currently increasing at a faster pace than that of CPUs, the advantages of GPU-based software are likely to be more pronounced in the future.

  11. Parallel Monte Carlo Particle Transport and the Quality of Random Number Generators: How Good is Good Enough?

    SciTech Connect

    Procassini, R J; Beck, B R

    2004-12-07

    It might be assumed that use of a ''high-quality'' random number generator (RNG), producing a sequence of ''pseudo random'' numbers with a ''long'' repetition period, is crucial for producing unbiased results in Monte Carlo particle transport simulations. While several theoretical and empirical tests have been devised to check the quality (randomness and period) of an RNG, for many applications it is not clear what level of RNG quality is required to produce unbiased results. This paper explores the issue of RNG quality in the context of parallel, Monte Carlo transport simulations in order to determine how ''good'' is ''good enough''. This study employs the MERCURY Monte Carlo code, which incorporates the CNPRNG library for the generation of pseudo-random numbers via linear congruential generator (LCG) algorithms. The paper outlines the usage of random numbers during parallel MERCURY simulations, and then describes the source and criticality transport simulations which comprise the empirical basis of this study. A series of calculations for each test problem in which the quality of the RNG (period of the LCG) is varied provides the empirical basis for determining the minimum repetition period which may be employed without producing a bias in the mean integrated results.

  12. Monte Carlo Benchmark

    SciTech Connect

    2010-10-20

    The "Monte Carlo Benchmark" (MCB) is intended to model the computatiional performance of Monte Carlo algorithms on parallel architectures. It models the solution of a simple heuristic transport equation using a Monte Carlo technique. The MCB employs typical features of Monte Carlo algorithms such as particle creation, particle tracking, tallying particle information, and particle destruction. Particles are also traded among processors using MPI calls.

  13. INTERDISCIPLINARY PHYSICS AND RELATED AREAS OF SCIENCE AND TECHNOLOGY: Monte—Carlo Simulation of Multiple-Molecular-Motor Transport

    NASA Astrophysics Data System (ADS)

    Wang, Zi-Qing; Wang, Guo-Dong; Shen, Wei-Bo

    2010-10-01

    Multimotor transport is studied by Monte-Carlo simulation with consideration of motor detachment from the filament. Our work shows, in the case of low load, the velocity of multi-motor system can decrease or increase with increasing motor numbers depending on the single motor force-velocity curve. The stall force and run-length reduced greatly compared to other models. Especially in the case of low ATP concentrations, the stall force of multi motor transport even smaller than the single motor's stall force.

  14. Predicting the timing properties of phosphor-coated scintillators using Monte Carlo light transport simulation

    PubMed Central

    Roncali, Emilie; Schmall, Jeffrey P.; Viswanath, Varsha; Berg, Eric; Cherry, Simon R.

    2014-01-01

    Current developments in positron emission tomography (PET) focus on improving timing performance for scanners with time-of-flight (TOF) capability, and incorporating depth-of-interaction (DOI) information. Recent studies have shown that incorporating DOI correction in TOF detectors can improve timing resolution, and that DOI also becomes more important in long axial field-of-view scanners. We have previously reported the development of DOI-encoding detectors using phosphor-coated scintillation crystals; here we study the timing properties of those crystals to assess the feasibility of providing some level of DOI information without significantly degrading the timing performance. We used Monte Carlo simulations to provide a detailed understanding of light transport in phosphor-coated crystals which cannot be fully characterized experimentally. Our simulations used a custom reflectance model based on 3D crystal surface measurements. Lutetium oxyorthosilicate (LSO) crystals were simulated with a phosphor coating in contact with the scintillator surfaces and an external diffuse reflector (teflon). Light output, energy resolution, and pulse shape showed excellent agreement with experimental data obtained on 3 × 3 × 10 mm3 crystals coupled to a photomultiplier tube (PMT). Scintillator intrinsic timing resolution was simulated with head-on and side-on configurations, confirming the trends observed experimentally. These results indicate that the model may be used to predict timing properties in phosphor-coated crystals and guide the coating for optimal DOI resolution/timing performance trade-off for a given crystal geometry. Simulation data suggested that a time stamp generated from early photoelectrons minimizes degradation of the timing resolution, thus making this method potentially more useful for TOF-DOI detectors than our initial experiments suggested. Finally, this approach could easily be extended to the study of timing properties in other scintillation crystals

  15. Monte Carlo simulation of ion transport of the high strain ionomer with conducting powder electrodes

    NASA Astrophysics Data System (ADS)

    He, Xingxi; Leo, Donald J.

    2007-04-01

    The transport of charge due to electric stimulus is the primary mechanism of actuation for a class of polymeric active materials known as ionomeric polymer transducers (IPT). At low frequency, strain response is strongly related to charge accumulation at the electrodes. Experimental results demonstrated using conducting powder, such as single-walled carbon nanotubes (SWNT), polyaniline (PANI) powders, high surface area RuO II, carbon black electrodes etc. as an electrode increases the mechanical deformation of the IPT by increasing the capacitance of the material. In this paper, Monte Carlo simulation of a two-dimensional ion hopping model has been built to describe ion transport in the IPT. The shape of the conducting powder is assumed to be a sphere. A step voltage is applied between the electrodes of the IPT, causing the thermally-activated hopping between multiwell energy structures. Energy barrier height includes three parts: the energy height due to the external electric potential, intrinsic energy, and the energy height due to ion interactions. Finite element method software-ANSYS is employed to calculate the static electric potential distribution inside the material with the powder sphere in varied locations. The interaction between ions and the electrodes including powder electrodes is determined by using the method of images. At each simulation step, the energy of each cation is updated to compute ion hopping rate which directly relates to the probability of an ion moving to its neighboring site. Simulation ends when the current drops to constant zero. Periodic boundary conditions are applied when ions hop in the direction perpendicular to the external electric field. When an ion is moved out of the simulation region, its corresponding periodic replica enters from the opposite side. In the direction of the external electric field, parallel programming is achieved in C augmented with functions that perform message-passing between processors using Message

  16. Experimental test of Monte Carlo proton transport at grazing incidence in GEANT4, FLUKA and MCNPX

    NASA Astrophysics Data System (ADS)

    Kimstrand, Peter; Tilly, Nina; Ahnesjö, Anders; Traneus, Erik

    2008-02-01

    The ability of the Monte Carlo (MC) particle transport codes GEANT4.8.1 and GEANT4.8.2, FLUKA2006 and MCNPX2.4.0 to model proton transport at grazing incidence onto tungsten blocks has been tested and compared to experimental measurements. The test geometry consisted of a narrow proton beam of two energies, 98 MeV and 180 MeV, impinging on a thick tungsten alloy block at grazing incidence. The distribution of forward out-scatter from the tungsten alloy block was measured with a fluorescent screen viewed with a CCD camera via a mirror. In the MC simulations, the experimental setup was modelled and the dose deposited to the fluorescent screen material was scored. Simulations and measurements were made for four different incidence angles (3.5, 5.0, 7.5 and 10°). Several different sets of calculations were performed, studying the impact of different user-defined settings in the different MC packages. The study of different parameters settings in the GEANT4.8.1 simulation showed a strong dependence of the calculated out-scatter probability on the maximum allowed step length. For the largest incidence angle an increase of 60% in the out-scatter probability was found when restricting the maximum allowed step length to 0.05 cm. We also observed that the stepping algorithm of GEANT4.8.1 and 4.8.2 introduces a small non-physical directional and positional asymmetry at the exit boundary of the tungsten alloy block. The shape of the energy spectrum of protons being out-scattered agreed between the codes. The dose-weighted forward out-scatter probability, i.e. the ratio between the total signal from the unscattered beam and the out-scattered beam, showed a qualitative agreement of simulations compared to measurements. Quantitatively, the deviation of the simulations reached as high as 37%, while the experimental uncertainty was 14%. The mean emission angle of the simulations was within 16% of the measurement for all incidence angles with a measurement uncertainty of 8%.

  17. Toward Accurate Reaction Energetics for Molecular Line Growth at Surface: Quantum Monte Carlo and Density Functional Theory Calculations

    SciTech Connect

    Kanai, Y; Takeuchi, N

    2009-10-14

    We revisit the molecular line growth mechanism of styrene on the hydrogenated Si(001) 2x1 surface. In particular, we investigate the energetics of the radical chain reaction mechanism by means of diffusion quantum Monte Carlo (QMC) and density functional theory (DFT) calculations. For the exchange correlation (XC) functional we use the non-empirical generalized-gradient approximation (GGA) and meta-GGA. We find that the QMC result also predicts the intra dimer-row growth of the molecular line over the inter dimer-row growth, supporting the conclusion based on DFT results. However, the absolute magnitudes of the adsorption and reaction energies, and the heights of the energy barriers differ considerably between the QMC and DFT with the GGA/meta-GGA XC functionals.

  18. Generation of discrete scattering cross sections and demonstration of Monte Carlo charged particle transport in the Milagro IMC code package

    SciTech Connect

    Walsh, J. A.; Palmer, T. S.; Urbatsch, T. J.

    2013-07-01

    A new method for generating discrete scattering cross sections to be used in charged particle transport calculations is investigated. The method of data generation is presented and compared to current methods for obtaining discrete cross sections. The new, more generalized approach allows greater flexibility in choosing a cross section model from which to derive discrete values. Cross section data generated with the new method is verified through a comparison with discrete data obtained with an existing method. Additionally, a charged particle transport capability is demonstrated in the time-dependent Implicit Monte Carlo radiative transfer code package, Milagro. The implementation of this capability is verified using test problems with analytic solutions as well as a comparison of electron dose-depth profiles calculated with Milagro and an already-established electron transport code. An initial investigation of a preliminary integration of the discrete cross section generation method with the new charged particle transport capability in Milagro is also presented. (authors)

  19. A quantum transport model for atomic line radiation in plasmas*

    NASA Astrophysics Data System (ADS)

    Rosato, Joël

    2017-02-01

    Emission and absorption lines in plasmas are investigated theoretically using a phase space formulation of quantum electrodynamics. A transport equation for the one-photon Wigner function is derived and formulated in terms of the noncommutative Moyal product. This equation reduces to the standard radiative transfer equation at the large spectral band limit, when the characteristic spectral band of the emission and absorption coefficients is larger than the inverse photon absorption length and time. We examine deviations to this limit. An ideal slab geometry is considered. The Wigner function relative to hydrogen Lyman α in stellar atmospheric conditions is calculated.

  20. Thermal Transport Along the Dislocation Line in Silicon Carbide

    NASA Astrophysics Data System (ADS)

    Ni, Yuxiang; Xiong, Shiyun; Volz, Sebastian; Dumitric, Traian

    2014-09-01

    We elucidate thermal conductivity along the screw dislocation line, which represents a transport direction inaccessible to classical theories. By using equilibrium molecular dynamics simulations, we uncover a Burgers vector dependent thermal conductivity reduction in silicon carbide. The effect is uncorrelated with the classical modeling and originates in the highly deformed core region, which represents a significant source of anharmonic phonon-phonon scattering. High strain reduces the phonon relaxation time, especially in the longitudinal acoustic branches, and creates an effective internal thermal resistance around the dislocation axis. Our results have implications for designing materials useful for high-temperature electronics and thermoelectric applications.

  1. Beta/gamma Monte Carlo transport in repetitive structures of satellite systems

    NASA Astrophysics Data System (ADS)

    Halbleib, J. A.

    An efficient electron-photon Monte Carlo model, taking advantage of approximate periodicity in repetitive satellite structures, is employed to benchmark a more approximate code and to study the shielding effect of a honeycomb-like structure.

  2. Line-by-line transport calculations for Jupiter entry probes. [of radiative transfer

    NASA Technical Reports Server (NTRS)

    Arnold, J. O.; Cooper, D. M.; Park, C.; Prakash, S. G.

    1979-01-01

    Line-by-line calculations of the radiative transport for a condition near peak heating for entry of the Galileo probe into the Jovian atmosphere are described. The discussion includes a thorough specification of the atomic and molecular input data used in the calculations that could be useful to others working in the field. The results show that the use of spectrally averaged cross sections for diatomic absorbers such as CO and C2 in the boundary layer can lead to an underestimation (by as much as 29%) of the spectral flux at the stagnation point. On the other hand, for the turbulent region near the cone frustum on the probe, the flow tends to be optically thin, and the spectrally averaged results commonly used in coupled radiative transport-flow field calculations are in good agreement with the present line-by-line results. It is recommended that these results be taken into account in sizing the final thickness of the Galileo's heat shield.

  3. Using FLUKA Monte Carlo transport code to develop parameterizations for fluence and energy deposition data for high-energy heavy charged particles

    NASA Astrophysics Data System (ADS)

    Brittingham, John; Townsend, Lawrence; Barzilla, Janet; Lee, Kerry

    2012-03-01

    Monte Carlo codes provide an effective means of modeling three dimensional radiation transport; however, their use is both time- and resource-intensive. The creation of a lookup table or parameterization from Monte Carlo simulation allows users to perform calculations with Monte Carlo results without replicating lengthy calculations. FLUKA Monte Carlo transport code was used to develop lookup tables and parameterizations for data resulting from the penetration of layers of aluminum, polyethylene, and water with areal densities ranging from 0 to 100 g/cm2. Heavy charged ion radiation including ions from Z=1 to Z=26 and from 0.1 to 10 GeV/nucleon were simulated. Dose, dose equivalent, and fluence as a function of particle identity, energy, and scattering angle were examined at various depths. Calculations were compared to well-known data and the calculations of other deterministic and Monte Carlo codes. Results will be presented.

  4. Multilevel Monte Carlo for two phase flow and Buckley–Leverett transport in random heterogeneous porous media

    SciTech Connect

    Müller, Florian Jenny, Patrick Meyer, Daniel W.

    2013-10-01

    Monte Carlo (MC) is a well known method for quantifying uncertainty arising for example in subsurface flow problems. Although robust and easy to implement, MC suffers from slow convergence. Extending MC by means of multigrid techniques yields the multilevel Monte Carlo (MLMC) method. MLMC has proven to greatly accelerate MC for several applications including stochastic ordinary differential equations in finance, elliptic stochastic partial differential equations and also hyperbolic problems. In this study, MLMC is combined with a streamline-based solver to assess uncertain two phase flow and Buckley–Leverett transport in random heterogeneous porous media. The performance of MLMC is compared to MC for a two dimensional reservoir with a multi-point Gaussian logarithmic permeability field. The influence of the variance and the correlation length of the logarithmic permeability on the MLMC performance is studied.

  5. Monte Carlo simulations as a tool to optimize target detection by AUV/ROV laser line scanners

    NASA Astrophysics Data System (ADS)

    Montes-Hugo, Martin A.; Carder, Kendall

    2005-05-01

    The widespread use of laser line scanners (LLS) aboard autonomous underwater vehicles (AUV) and remotely operated vehicles (ROV) in the last decade has opened a unique window to a series of homeland security applications. Numerical experiments were performed to calculate the target signal and the effect of background medium (bottom, water) signals on target identification of fan-type LLS (Real-time Ocean Bottom Optical Topographer, ROBOT). Several 2-D Monte Carlo simulations were run with various bottom albedos, optical properties of the water, laser wavelengths, target distances, and source-detector angles. A forward 1-D Monte Carlo model was validated using Hydrolight based on upwelling and downwelling irradiance values computed at different depths. Signal/noise values (S/N) at the ROBOT detector were obtained by dividing the target peak by the path-radiance peak for each line-spread function. Since bottom-target reflectance was assumed Lambertian, target contribution was symmetrical with respect to the center of the target. Conversely, background contributions evidenced a bulge on the path radiance side of the target center, which was more apparent at higher turbidities. As expected, S/N values were higher when ROBOT was closer to the target. For daylight simulations, system noise includes both LLS path radiance and environmental path and target radiances because they reduce the laser-line contrast. The Hybrid marine optical model (HyMOM) provided the environmental radiance field. Optimum target detection based on laser wavelength and source-detector angle will depend on chosen ambient light conditions and AUV-ROVs altitude settings.

  6. Update On the Status of the FLUKA Monte Carlo Transport Code*

    NASA Technical Reports Server (NTRS)

    Ferrari, A.; Lorenzo-Sentis, M.; Roesler, S.; Smirnov, G.; Sommerer, F.; Theis, C.; Vlachoudis, V.; Carboni, M.; Mostacci, A.; Pelliccioni, M.

    2006-01-01

    The FLUKA Monte Carlo transport code is a well-known simulation tool in High Energy Physics. FLUKA is a dynamic tool in the sense that it is being continually updated and improved by the authors. We review the progress achieved since the last CHEP Conference on the physics models, some technical improvements to the code and some recent applications. From the point of view of the physics, improvements have been made with the extension of PEANUT to higher energies for p, n, pi, pbar/nbar and for nbars down to the lowest energies, the addition of the online capability to evolve radioactive products and get subsequent dose rates, upgrading of the treatment of EM interactions with the elimination of the need to separately prepare preprocessed files. A new coherent photon scattering model, an updated treatment of the photo-electric effect, an improved pair production model, new photon cross sections from the LLNL Cullen database have been implemented. In the field of nucleus-- nucleus interactions the electromagnetic dissociation of heavy ions has been added along with the extension of the interaction models for some nuclide pairs to energies below 100 MeV/A using the BME approach, as well as the development of an improved QMD model for intermediate energies. Both DPMJET 2.53 and 3 remain available along with rQMD 2.4 for heavy ion interactions above 100 MeV/A. Technical improvements include the ability to use parentheses in setting up the combinatorial geometry, the introduction of pre-processor directives in the input stream. a new random number generator with full 64 bit randomness, new routines for mathematical special functions (adapted from SLATEC). Finally, work is progressing on the deployment of a user-friendly GUI input interface as well as a CAD-like geometry creation and visualization tool. On the application front, FLUKA has been used to extensively evaluate the potential space radiation effects on astronauts for future deep space missions, the activation

  7. NASA astronaut dosimetry: Implementation of scalable human phantoms and benchmark comparisons of deterministic versus Monte Carlo radiation transport

    NASA Astrophysics Data System (ADS)

    Bahadori, Amir Alexander

    Astronauts are exposed to a unique radiation environment in space. United States terrestrial radiation worker limits, derived from guidelines produced by scientific panels, do not apply to astronauts. Limits for astronauts have changed throughout the Space Age, eventually reaching the current National Aeronautics and Space Administration limit of 3% risk of exposure induced death, with an administrative stipulation that the risk be assured to the upper 95% confidence limit. Much effort has been spent on reducing the uncertainty associated with evaluating astronaut risk for radiogenic cancer mortality, while tools that affect the accuracy of the calculations have largely remained unchanged. In the present study, the impacts of using more realistic computational phantoms with size variability to represent astronauts with simplified deterministic radiation transport were evaluated. Next, the impacts of microgravity-induced body changes on space radiation dosimetry using the same transport method were investigated. Finally, dosimetry and risk calculations resulting from Monte Carlo radiation transport were compared with results obtained using simplified deterministic radiation transport. The results of the present study indicated that the use of phantoms that more accurately represent human anatomy can substantially improve space radiation dose estimates, most notably for exposures from solar particle events under light shielding conditions. Microgravity-induced changes were less important, but results showed that flexible phantoms could assist in optimizing astronaut body position for reducing exposures during solar particle events. Finally, little overall differences in risk calculations using simplified deterministic radiation transport and 3D Monte Carlo radiation transport were found; however, for the galactic cosmic ray ion spectra, compensating errors were observed for the constituent ions, thus exhibiting the need to perform evaluations on a particle

  8. ACCELERATING FUSION REACTOR NEUTRONICS MODELING BY AUTOMATIC COUPLING OF HYBRID MONTE CARLO/DETERMINISTIC TRANSPORT ON CAD GEOMETRY

    SciTech Connect

    Biondo, Elliott D; Ibrahim, Ahmad M; Mosher, Scott W; Grove, Robert E

    2015-01-01

    Detailed radiation transport calculations are necessary for many aspects of the design of fusion energy systems (FES) such as ensuring occupational safety, assessing the activation of system components for waste disposal, and maintaining cryogenic temperatures within superconducting magnets. Hybrid Monte Carlo (MC)/deterministic techniques are necessary for this analysis because FES are large, heavily shielded, and contain streaming paths that can only be resolved with MC. The tremendous complexity of FES necessitates the use of CAD geometry for design and analysis. Previous ITER analysis has required the translation of CAD geometry to MCNP5 form in order to use the AutomateD VAriaNce reducTion Generator (ADVANTG) for hybrid MC/deterministic transport. In this work, ADVANTG was modified to support CAD geometry, allowing hybrid (MC)/deterministic transport to be done automatically and eliminating the need for this translation step. This was done by adding a new ray tracing routine to ADVANTG for CAD geometries using the Direct Accelerated Geometry Monte Carlo (DAGMC) software library. This new capability is demonstrated with a prompt dose rate calculation for an ITER computational benchmark problem using both the Consistent Adjoint Driven Importance Sampling (CADIS) method an the Forward Weighted (FW)-CADIS method. The variance reduction parameters produced by ADVANTG are shown to be the same using CAD geometry and standard MCNP5 geometry. Significant speedups were observed for both neutrons (as high as a factor of 7.1) and photons (as high as a factor of 59.6).

  9. Mercury + VisIt: Integration of a Real-Time Graphical Analysis Capability into a Monte Carlo Transport Code

    SciTech Connect

    O'Brien, M J; Procassini, R J; Joy, K I

    2009-03-09

    Validation of the problem definition and analysis of the results (tallies) produced during a Monte Carlo particle transport calculation can be a complicated, time-intensive processes. The time required for a person to create an accurate, validated combinatorial geometry (CG) or mesh-based representation of a complex problem, free of common errors such as gaps and overlapping cells, can range from days to weeks. The ability to interrogate the internal structure of a complex, three-dimensional (3-D) geometry, prior to running the transport calculation, can improve the user's confidence in the validity of the problem definition. With regard to the analysis of results, the process of extracting tally data from printed tables within a file is laborious and not an intuitive approach to understanding the results. The ability to display tally information overlaid on top of the problem geometry can decrease the time required for analysis and increase the user's understanding of the results. To this end, our team has integrated VisIt, a parallel, production-quality visualization and data analysis tool into Mercury, a massively-parallel Monte Carlo particle transport code. VisIt provides an API for real time visualization of a simulation as it is running. The user may select which plots to display from the VisIt GUI, or by sending VisIt a Python script from Mercury. The frequency at which plots are updated can be set and the user can visualize the simulation results as it is running.

  10. Verification of Three Dimensional Triangular Prismatic Discrete Ordinates Transport Code ENSEMBLE-TRIZ by Comparison with Monte Carlo Code GMVP

    NASA Astrophysics Data System (ADS)

    Homma, Yuto; Moriwaki, Hiroyuki; Ohki, Shigeo; Ikeda, Kazumi

    2014-06-01

    This paper deals with verification of three dimensional triangular prismatic discrete ordinates transport calculation code ENSEMBLE-TRIZ by comparison with multi-group Monte Carlo calculation code GMVP in a large fast breeder reactor. The reactor is a 750 MWe electric power sodium cooled reactor. Nuclear characteristics are calculated at beginning of cycle of an initial core and at beginning and end of cycle of equilibrium core. According to the calculations, the differences between the two methodologies are smaller than 0.0002 Δk in the multi-plication factor, relatively about 1% in the control rod reactivity, and 1% in the sodium void reactivity.

  11. Use of single scatter electron monte carlo transport for medical radiation sciences

    DOEpatents

    Svatos, Michelle M.

    2001-01-01

    The single scatter Monte Carlo code CREEP models precise microscopic interactions of electrons with matter to enhance physical understanding of radiation sciences. It is designed to simulate electrons in any medium, including materials important for biological studies. It simulates each interaction individually by sampling from a library which contains accurate information over a broad range of energies.

  12. Correlation of electron transport and photocatalysis of nanocrystalline clusters studied by Monte-Carlo continuity random walking.

    PubMed

    Liu, Baoshun; Li, Ziqiang; Zhao, Xiujian

    2015-02-21

    In this research, Monte-Carlo Continuity Random Walking (MC-RW) model was used to study the relation between electron transport and photocatalysis of nano-crystalline (nc) clusters. The effects of defect energy disorder, spatial disorder of material structure, electron density, and interfacial transfer/recombination on the electron transport and the photocatalysis were studied. Photocatalytic activity is defined as 1/τ from a statistical viewpoint with τ being the electron average lifetime. Based on the MC-RW simulation, a clear physical and chemical "picture" was given for the photocatalytic kinetic analysis of nc-clusters. It is shown that the increase of defect energy disorder and material spatial structural disorder, such as the decrease of defect trap number, the increase of crystallinity, the increase of particle size, and the increase of inter-particle connection, can enhance photocatalytic activity through increasing electron transport ability. The increase of electron density increases the electron Fermi level, which decreases the activation energy for electron de-trapping from traps to extending states, and correspondingly increases electron transport ability and photocatalytic activity. Reducing recombination of electrons and holes can increase electron transport through the increase of electron density and then increases the photocatalytic activity. In addition to the electron transport, the increase of probability for electrons to undergo photocatalysis can increase photocatalytic activity through the increase of the electron interfacial transfer speed.

  13. Coupling of kinetic Monte Carlo simulations of surface reactions to transport in a fluid for heterogeneous catalytic reactor modeling

    SciTech Connect

    Schaefer, C.; Jansen, A. P. J.

    2013-02-07

    We have developed a method to couple kinetic Monte Carlo simulations of surface reactions at a molecular scale to transport equations at a macroscopic scale. This method is applicable to steady state reactors. We use a finite difference upwinding scheme and a gap-tooth scheme to efficiently use a limited amount of kinetic Monte Carlo simulations. In general the stochastic kinetic Monte Carlo results do not obey mass conservation so that unphysical accumulation of mass could occur in the reactor. We have developed a method to perform mass balance corrections that is based on a stoichiometry matrix and a least-squares problem that is reduced to a non-singular set of linear equations that is applicable to any surface catalyzed reaction. The implementation of these methods is validated by comparing numerical results of a reactor simulation with a unimolecular reaction to an analytical solution. Furthermore, the method is applied to two reaction mechanisms. The first is the ZGB model for CO oxidation in which inevitable poisoning of the catalyst limits the performance of the reactor. The second is a model for the oxidation of NO on a Pt(111) surface, which becomes active due to lateral interaction at high coverages of oxygen. This reaction model is based on ab initio density functional theory calculations from literature.

  14. Coupling of kinetic Monte Carlo simulations of surface reactions to transport in a fluid for heterogeneous catalytic reactor modeling

    NASA Astrophysics Data System (ADS)

    Schaefer, C.; Jansen, A. P. J.

    2013-02-01

    We have developed a method to couple kinetic Monte Carlo simulations of surface reactions at a molecular scale to transport equations at a macroscopic scale. This method is applicable to steady state reactors. We use a finite difference upwinding scheme and a gap-tooth scheme to efficiently use a limited amount of kinetic Monte Carlo simulations. In general the stochastic kinetic Monte Carlo results do not obey mass conservation so that unphysical accumulation of mass could occur in the reactor. We have developed a method to perform mass balance corrections that is based on a stoichiometry matrix and a least-squares problem that is reduced to a non-singular set of linear equations that is applicable to any surface catalyzed reaction. The implementation of these methods is validated by comparing numerical results of a reactor simulation with a unimolecular reaction to an analytical solution. Furthermore, the method is applied to two reaction mechanisms. The first is the ZGB model for CO oxidation in which inevitable poisoning of the catalyst limits the performance of the reactor. The second is a model for the oxidation of NO on a Pt(111) surface, which becomes active due to lateral interaction at high coverages of oxygen. This reaction model is based on ab initio density functional theory calculations from literature.

  15. Thermal-to-fusion neutron convertor and Monte Carlo coupled simulation of deuteron/triton transport and secondary products generation

    NASA Astrophysics Data System (ADS)

    Wang, Guan-bo; Liu, Han-gang; Wang, Kan; Yang, Xin; Feng, Qi-jie

    2012-09-01

    Thermal-to-fusion neutron convertor has being studied in China Academy of Engineering Physics (CAEP). Current Monte Carlo codes, such as MCNP and GEANT, are inadequate when applied in this multi-step reactions problems. A Monte Carlo tool RSMC (Reaction Sequence Monte Carlo) has been developed to simulate such coupled problem, from neutron absorption, to charged particle ionization and secondary neutron generation. "Forced particle production" variance reduction technique has been implemented to improve the calculation speed distinctly by making deuteron/triton induced secondary product plays a major role. Nuclear data is handled from ENDF or TENDL, and stopping power from SRIM, which described better for low energy deuteron/triton interactions. As a validation, accelerator driven mono-energy 14 MeV fusion neutron source is employed, which has been deeply studied and includes deuteron transport and secondary neutron generation. Various parameters, including fusion neutron angle distribution, average neutron energy at different emission directions, differential and integral energy distributions, are calculated with our tool and traditional deterministic method as references. As a result, we present the calculation results of convertor with RSMC, including conversion ratio of 1 mm 6LiD with a typical thermal neutron (Maxwell spectrum) incidence, and fusion neutron spectrum, which will be used for our experiment.

  16. Coupling of kinetic Monte Carlo simulations of surface reactions to transport in a fluid for heterogeneous catalytic reactor modeling.

    PubMed

    Schaefer, C; Jansen, A P J

    2013-02-07

    We have developed a method to couple kinetic Monte Carlo simulations of surface reactions at a molecular scale to transport equations at a macroscopic scale. This method is applicable to steady state reactors. We use a finite difference upwinding scheme and a gap-tooth scheme to efficiently use a limited amount of kinetic Monte Carlo simulations. In general the stochastic kinetic Monte Carlo results do not obey mass conservation so that unphysical accumulation of mass could occur in the reactor. We have developed a method to perform mass balance corrections that is based on a stoichiometry matrix and a least-squares problem that is reduced to a non-singular set of linear equations that is applicable to any surface catalyzed reaction. The implementation of these methods is validated by comparing numerical results of a reactor simulation with a unimolecular reaction to an analytical solution. Furthermore, the method is applied to two reaction mechanisms. The first is the ZGB model for CO oxidation in which inevitable poisoning of the catalyst limits the performance of the reactor. The second is a model for the oxidation of NO on a Pt(111) surface, which becomes active due to lateral interaction at high coverages of oxygen. This reaction model is based on ab initio density functional theory calculations from literature.

  17. Impact of punctual flat magnetic shear on the field line transport

    NASA Astrophysics Data System (ADS)

    Abud, C. V.; Caldas, I. L.

    2015-06-01

    We investigate the magnetic field line transport for tokamak equilibria with monotonic magnetic shear perturbed by resonant fields. We show that when the local profile is flat at the plasma edge a transport barrier can be created leading to a field line transport reduction. This transport reduction is due to the field lines topological modifications, caused by a local flattened profile that reduces the global field lines escape pattern. The results are obtained by applying a symplectic map that describes perturbed magnetic field lines in large aspect ratio tokamaks.

  18. Impact of punctual flat magnetic shear on the field line transport

    SciTech Connect

    Abud, C. V.; Caldas, I. L.

    2015-06-15

    We investigate the magnetic field line transport for tokamak equilibria with monotonic magnetic shear perturbed by resonant fields. We show that when the local profile is flat at the plasma edge a transport barrier can be created leading to a field line transport reduction. This transport reduction is due to the field lines topological modifications, caused by a local flattened profile that reduces the global field lines escape pattern. The results are obtained by applying a symplectic map that describes perturbed magnetic field lines in large aspect ratio tokamaks.

  19. Comparison of Space Radiation Calculations from Deterministic and Monte Carlo Transport Codes

    NASA Technical Reports Server (NTRS)

    Adams, J. H.; Lin, Z. W.; Nasser, A. F.; Randeniya, S.; Tripathi, r. K.; Watts, J. W.; Yepes, P.

    2010-01-01

    The presentation outline includes motivation, radiation transport codes being considered, space radiation cases being considered, results for slab geometry, results from spherical geometry, and summary. ///////// main physics in radiation transport codes hzetrn uprop fluka geant4, slab geometry, spe, gcr,

  20. Multi-core performance studies of a Monte Carlo neutron transport code

    SciTech Connect

    Siegel, A. R.; Smith, K.; Romano, P. K.; Forget, B.; Felker, K. G.

    2013-07-14

    Performance results are presented for a multi-threaded version of the OpenMC Monte Carlo neutronics code using OpenMP in the context of nuclear reactor criticality calculations. Our main interest is production computing, and thus we limit our approach to threading strategies that both require reasonable levels of development effort and preserve the code features necessary for robust application to real-world reactor problems. Several approaches are developed and the results compared on several multi-core platforms using a popular reactor physics benchmark. A broad range of performance studies are distilled into a simple, consistent picture of the empirical performance characteristics of reactor Monte Carlo algorithms on current multi-core architectures.

  1. MGGPOD: a Monte Carlo Suite for Modeling Instrumental Line and Continuum Backgrounds in Gamma-Ray Astronomy

    NASA Technical Reports Server (NTRS)

    Weidenspointner, G.; Harris, M. J.; Sturner, S.; Teegarden, B. J.; Ferguson, C.

    2004-01-01

    Intense and complex instrumental backgrounds, against which the much smaller signals from celestial sources have to be discerned, are a notorious problem for low and intermediate energy gamma-ray astronomy (approximately 50 keV - 10 MeV). Therefore a detailed qualitative and quantitative understanding of instrumental line and continuum backgrounds is crucial for most stages of gamma-ray astronomy missions, ranging from the design and development of new instrumentation through performance prediction to data reduction. We have developed MGGPOD, a user-friendly suite of Monte Carlo codes built around the widely used GEANT (Version 3.21) package, to simulate ab initio the physical processes relevant for the production of instrumental backgrounds. These include the build-up and delayed decay of radioactive isotopes as well as the prompt de-excitation of excited nuclei, both of which give rise to a plethora of instrumental gamma-ray background lines in addition t o continuum backgrounds. The MGGPOD package and documentation are publicly available for download. We demonstrate the capabilities of the MGGPOD suite by modeling high resolution gamma-ray spectra recorded by the Transient Gamma-Ray Spectrometer (TGRS) on board Wind during 1995. The TGRS is a Ge spectrometer operating in the 40 keV to 8 MeV range. Due to its fine energy resolution, these spectra reveal the complex instrumental background in formidable detail, particularly the many prompt and delayed gamma-ray lines. We evaluate the successes and failures of the MGGPOD package in reproducing TGRS data, and provide identifications for the numerous instrumental lines.

  2. Voxel2MCNP: a framework for modeling, simulation and evaluation of radiation transport scenarios for Monte Carlo codes.

    PubMed

    Pölz, Stefan; Laubersheimer, Sven; Eberhardt, Jakob S; Harrendorf, Marco A; Keck, Thomas; Benzler, Andreas; Breustedt, Bastian

    2013-08-21

    The basic idea of Voxel2MCNP is to provide a framework supporting users in modeling radiation transport scenarios using voxel phantoms and other geometric models, generating corresponding input for the Monte Carlo code MCNPX, and evaluating simulation output. Applications at Karlsruhe Institute of Technology are primarily whole and partial body counter calibration and calculation of dose conversion coefficients. A new generic data model describing data related to radiation transport, including phantom and detector geometries and their properties, sources, tallies and materials, has been developed. It is modular and generally independent of the targeted Monte Carlo code. The data model has been implemented as an XML-based file format to facilitate data exchange, and integrated with Voxel2MCNP to provide a common interface for modeling, visualization, and evaluation of data. Also, extensions to allow compatibility with several file formats, such as ENSDF for nuclear structure properties and radioactive decay data, SimpleGeo for solid geometry modeling, ImageJ for voxel lattices, and MCNPX's MCTAL for simulation results have been added. The framework is presented and discussed in this paper and example workflows for body counter calibration and calculation of dose conversion coefficients is given to illustrate its application.

  3. Development of parallel monte carlo electron and photon transport (PMCEPT) code III: Applications to medical radiation physics

    NASA Astrophysics Data System (ADS)

    Kum, Oyeon; Han, Youngyih; Jeong, Hae Sun

    2012-05-01

    Minimizing the differences between dose distributions calculated at the treatment planning stage and those delivered to the patient is an essential requirement for successful radiotheraphy. Accurate calculation of dose distributions in the treatment planning process is important and can be done only by using a Monte Carlo calculation of particle transport. In this paper, we perform a further validation of our previously developed parallel Monte Carlo electron and photon transport (PMCEPT) code [Kum and Lee, J. Korean Phys. Soc. 47, 716 (2005) and Kim and Kum, J. Korean Phys. Soc. 49, 1640 (2006)] for applications to clinical radiation problems. A linear accelerator, Siemens' Primus 6 MV, was modeled and commissioned. A thorough validation includes both small fields, closely related to the intensity modulated radiation treatment (IMRT), and large fields. Two-dimensional comparisons with film measurements were also performed. The PMCEPT results, in general, agreed well with the measured data within a maximum error of about 2%. However, considering the experimental errors, the PMCEPT results can provide the gold standard of dose distributions for radiotherapy. The computing time was also much faster, compared to that needed for experiments, although it is still a bottleneck for direct applications to the daily routine treatment planning procedure.

  4. A multi-agent quantum Monte Carlo model for charge transport: Application to organic field-effect transistors

    SciTech Connect

    Bauer, Thilo; Jäger, Christof M.; Jordan, Meredith J. T.; Clark, Timothy

    2015-07-28

    We have developed a multi-agent quantum Monte Carlo model to describe the spatial dynamics of multiple majority charge carriers during conduction of electric current in the channel of organic field-effect transistors. The charge carriers are treated by a neglect of diatomic differential overlap Hamiltonian using a lattice of hydrogen-like basis functions. The local ionization energy and local electron affinity defined previously map the bulk structure of the transistor channel to external potentials for the simulations of electron- and hole-conduction, respectively. The model is designed without a specific charge-transport mechanism like hopping- or band-transport in mind and does not arbitrarily localize charge. An electrode model allows dynamic injection and depletion of charge carriers according to source-drain voltage. The field-effect is modeled by using the source-gate voltage in a Metropolis-like acceptance criterion. Although the current cannot be calculated because the simulations have no time axis, using the number of Monte Carlo moves as pseudo-time gives results that resemble experimental I/V curves.

  5. Optimizing light transport in scintillation crystals for time-of-flight PET: an experimental and optical Monte Carlo simulation study.

    PubMed

    Berg, Eric; Roncali, Emilie; Cherry, Simon R

    2015-06-01

    Achieving excellent timing resolution in gamma ray detectors is crucial in several applications such as medical imaging with time-of-flight positron emission tomography (TOF-PET). Although many factors impact the overall system timing resolution, the statistical nature of scintillation light, including photon production and transport in the crystal to the photodetector, is typically the limiting factor for modern scintillation detectors. In this study, we investigated the impact of surface treatment, in particular, roughening select areas of otherwise polished crystals, on light transport and timing resolution. A custom Monte Carlo photon tracking tool was used to gain insight into changes in light collection and timing resolution that were observed experimentally: select roughening configurations increased the light collection up to 25% and improved timing resolution by 15% compared to crystals with all polished surfaces. Simulations showed that partial surface roughening caused a greater number of photons to be reflected towards the photodetector and increased the initial rate of photoelectron production. This study provides a simple method to improve timing resolution and light collection in scintillator-based gamma ray detectors, a topic of high importance in the field of TOF-PET. Additionally, we demonstrated utility of our Monte Carlo simulation tool to accurately predict the effect of altering crystal surfaces on light collection and timing resolution.

  6. Optimizing light transport in scintillation crystals for time-of-flight PET: an experimental and optical Monte Carlo simulation study

    PubMed Central

    Berg, Eric; Roncali, Emilie; Cherry, Simon R.

    2015-01-01

    Achieving excellent timing resolution in gamma ray detectors is crucial in several applications such as medical imaging with time-of-flight positron emission tomography (TOF-PET). Although many factors impact the overall system timing resolution, the statistical nature of scintillation light, including photon production and transport in the crystal to the photodetector, is typically the limiting factor for modern scintillation detectors. In this study, we investigated the impact of surface treatment, in particular, roughening select areas of otherwise polished crystals, on light transport and timing resolution. A custom Monte Carlo photon tracking tool was used to gain insight into changes in light collection and timing resolution that were observed experimentally: select roughening configurations increased the light collection up to 25% and improved timing resolution by 15% compared to crystals with all polished surfaces. Simulations showed that partial surface roughening caused a greater number of photons to be reflected towards the photodetector and increased the initial rate of photoelectron production. This study provides a simple method to improve timing resolution and light collection in scintillator-based gamma ray detectors, a topic of high importance in the field of TOF-PET. Additionally, we demonstrated utility of our Monte Carlo simulation tool to accurately predict the effect of altering crystal surfaces on light collection and timing resolution. PMID:26114040

  7. Modern Monte Carlo particle transport simulation for safety and radiation protection applications in accelerometer technology and in space science

    NASA Astrophysics Data System (ADS)

    Filges, Detlef

    1992-04-01

    The application potential of modern particle radiation transport simulations to solve safety and radiation protection problems in accelerator technology and in space science and technology is presented. It is shown to what extent Monte Carlo simulation is helpful in defining safety regulations, safety standards and in determining corresponding safety proofs. For this purpose the basic methods are described and their performance together with particular examples are assessed. The state of the art of the computational methods is described together with the existing computer codes. The details of the current three dimensional geometry packages are also given. Necessary nuclear transport data and reaction cross sections in respect to shielding and safety protection problems are investigated. The performance and flexibility of HERMES (High Energy Radiation Monte Carlo Elaborate System), and its utilization in solving safety protection problems are demonstrated. Examples of radiation protection and high energy source shielding for medium and high energy particle accelerators and for high current particle accelerator target systems are summarized. Radiation protection and shielding of space vehicles against cosmic ray radiation are compiled and assessed. Validations of experimental results are also given.

  8. A bone composition model for Monte Carlo x-ray transport simulations

    SciTech Connect

    Zhou Hu; Keall, Paul J.; Graves, Edward E.

    2009-03-15

    In the megavoltage energy range although the mass attenuation coefficients of different bones do not vary by more than 10%, it has been estimated that a simple tissue model containing a single-bone composition could cause errors of up to 10% in the calculated dose distribution. In the kilovoltage energy range, the variation in mass attenuation coefficients of the bones is several times greater, and the expected error from applying this type of model could be as high as several hundred percent. Based on the observation that the calcium and phosphorus compositions of bones are strongly correlated with the bone density, the authors propose an analytical formulation of bone composition for Monte Carlo computations. Elemental compositions and densities of homogeneous adult human bones from the literature were used as references, from which the calcium and phosphorus compositions were fitted as polynomial functions of bone density and assigned to model bones together with the averaged compositions of other elements. To test this model using the Monte Carlo package DOSXYZnrc, a series of discrete model bones was generated from this formula and the radiation-tissue interaction cross-section data were calculated. The total energy released per unit mass of primary photons (terma) and Monte Carlo calculations performed using this model and the single-bone model were compared, which demonstrated that at kilovoltage energies the discrepancy could be more than 100% in bony dose and 30% in soft tissue dose. Percentage terma computed with the model agrees with that calculated on the published compositions to within 2.2% for kV spectra and 1.5% for MV spectra studied. This new bone model for Monte Carlo dose calculation may be of particular importance for dosimetry of kilovoltage radiation beams as well as for dosimetry of pediatric or animal subjects whose bone composition may differ substantially from that of adult human bones.

  9. Monte Carlo investigations of the wavelength dependence of light transport through turbid media

    NASA Astrophysics Data System (ADS)

    Mourant, Judith R.

    1997-12-01

    Elastic-scattering spectroscopy examines the wavelength dependence of light that has passed through a small volume of tissue. Measurements are typically made by placing two optical fibers on the surface of the tissue to be examined. The analysis of these measurements to obtain quantitative information about scattering and absorption is important to many biomedical applications such as cancer diagnosis and measurement of bilirubin concentrations. For fiber separations large enough for the diffusion approximation to be valid, this is straight forward. However, for clinical applications such as those listed above, the separation is too small for the diffusion approximation to be applicable. To obtain insight into the question of how scattering and absorption changes affect the wavelength dependence of the elastic-scatter signal Monte Carlo simulations have been used. First, it is shown that the Monte Carlo simulations and elastic-scatter measurements of polystyrene spheres agree quite well. Monte Carlo simulations are then used to investigate how particle size and concentration affect the elastic-scatter signal. It is found that the concentration has very little effect of the wavelength dependence, but that the size of the scattering particles does affect the wavelength dependence. In general, the signal decreases more rapidly as a function of wavelength for smaller particles.

  10. Spectra of polarized thermal radiation in a cloudy atmosphere: Line-by-Line and Monte Carlo model for passive remote sensing of cirrus and polar clouds

    NASA Astrophysics Data System (ADS)

    Fomin, Boris; Falaleeva, Victoria

    2016-07-01

    A polarized high-resolution 1-D model has been presented for TIR (Thermal Infrared) remote sensing application. It is based on the original versions of MC (Monte Carlo) and LbL (Line-by-Line) algorithms, which have shown their effectiveness when modelling the thermal radiation atmospheric transfer, taking into account, the semi-transparent Ci-type and polar clouds scattering, as well as the direct consideration of the spectra of molecular absorption. This model may be useful in the planning of satellite experiments and in the validation of similar models, which use the "k-distribution" or other approximations, to account for gaseous absorption. The example simulations demonstrate that, the selective gas absorption does not only significantly affect the absorption and emission of radiation, but also, its polarization in the Ci-type clouds. As a result, the spectra of polarized radiation contain important information about the clouds, and a high-resolution polarized limb sounding in the TIR, seems to be a useful tool in obtaining information on cloud types and their vertical structures.

  11. Thyroid hormone transport in a human glioma cell line.

    PubMed

    Goncalves, E; Lakshmanan, M; Pontecorvi, A; Robbins, J

    1990-03-05

    The uptake of 3,5,3'-triiodothyronine (T3) and thyroxine (T4) was studied in human glioma cells (Hs 683) and compared with that in several other neural cell lines. At 25 degrees C or 37 degrees C, total cell uptake rose rapidly and reached equilibrium within 60 min. The glioma cells had the highest uptake: 47.6 fmol of L-T3 and 43.4 fmol of L-T4 per 10(6) cells at 37 degrees C. These were inhibited 77% and 72%, respectively, by excess unlabeled hormone. Uptake in the nuclei reached equilibrium between 90 and 120 min and was also highest in glioma cells: 1.46 fmol of L-T3 and 0.49 fmol of L-T4 per 10(6) cells. When expressed as percent of total cell uptake, however, glioma cells had the lowest values (3.1% for L-T3 and 1.1% for L-T4). Also in contrast to other cell lines, glioma cells transported L-T4 almost as effectively as L-T3. D-T3 and D-T4 total cell uptake was 86% and 96% lower than that of the respective L-isomers, and the nuclear uptake as a fraction of the cell uptake was similar. Kinetic analysis of the initial rate of cell uptake gave Vmax values for D-T3 and D-T4 that were 97% and 98% lower than for the L-isomers. Antimycin and monodansylcadaverine decreased the Vmax as well as the equilibrium cell and nuclear uptake of the L-isomers. The apparent nuclear affinity constant for L-T4 in intact cells was inhibited 90% in the presence of antimycin, whereas no effect was observed in isolated nuclei.(ABSTRACT TRUNCATED AT 250 WORDS)

  12. ITS version 5.0 : the integrated TIGER series of coupled electron/photon Monte Carlo transport codes.

    SciTech Connect

    Franke, Brian Claude; Kensek, Ronald Patrick; Laub, Thomas William

    2004-06-01

    ITS is a powerful and user-friendly software package permitting state of the art Monte Carlo solution of linear time-independent couple electron/photon radiation transport problems, with or without the presence of macroscopic electric and magnetic fields of arbitrary spatial dependence. Our goal has been to simultaneously maximize operational simplicity and physical accuracy. Through a set of preprocessor directives, the user selects one of the many ITS codes. The ease with which the makefile system is applied combines with an input scheme based on order-independent descriptive keywords that makes maximum use of defaults and internal error checking to provide experimentalists and theorists alike with a method for the routine but rigorous solution of sophisticated radiation transport problems. Physical rigor is provided by employing accurate cross sections, sampling distributions, and physical models for describing the production and transport of the electron/photon cascade from 1.0 GeV down to 1.0 keV. The availability of source code permits the more sophisticated user to tailor the codes to specific applications and to extend the capabilities of the codes to more complex applications. Version 5.0, the latest version of ITS, contains (1) improvements to the ITS 3.0 continuous-energy codes, (2)multigroup codes with adjoint transport capabilities, and (3) parallel implementations of all ITS codes. Moreover the general user friendliness of the software has been enhanced through increased internal error checking and improved code portability.

  13. Game transport protocol: lightweight reliable transport protocol for massive interactive on-line game

    NASA Astrophysics Data System (ADS)

    Pack, Sangheon; Hong, Eunsil; Choi, Yanghee; Park, llkyu; Kim, Jong-Sung; Ko, D.

    2002-12-01

    With the advent of high-speed access network technologies such as ADSL, increasing numbers of Internet users are participating in various interactive multimedia applications. Among these, the most popular are the massively interactive on-line games, or MMPOGs. In MMPOGs, a large amount of event data is associated with various control objects. This event data has different characteristics from that which is generally used on the Internet. Namely, events occur very frequently with short inter-arrival times and their size is quite small, because they only contain control information. Most commercial MMPOGs use TCP or UDP as the transport protocol for the event data. However, since TCP is such a heavy protocol, due to its complex congestion control algorithm and byte-oriented window scheme, it is difficult to support many concurrent users. On the other hand, UDP is a relatively lightweight protocol, but there are no functions available which permit reliable transmission and session management. In this paper, we propose a new transport protocol, Game Transport Protocol (GTP), which is designed for the transmission of the event data used by MMPOGs. GTP supports several functions designed to meet the various requirements of MMPOGs. Firstly, GTP uses a packet-based window scheme not a byte-based window scheme as in the case of TCP. This scheme is quite simple and suitable for the small size of the event data. Also, GTP performs session management and retransmission using GTP control blocks, and supports an adaptive retransmission scheme that controls the maximum number of retransmissions according to the real-time priority, in order to meet the time constraints of the event data. Although GTP is a specialized transport protocol, optimized for MMPOGs, it could also be utilized as a transport protocol for other interactive multimedia applications.

  14. Comparison of dose estimates using the buildup-factor method and a Baryon transport code (BRYNTRN) with Monte Carlo results

    NASA Technical Reports Server (NTRS)

    Shinn, Judy L.; Wilson, John W.; Nealy, John E.; Cucinotta, Francis A.

    1990-01-01

    Continuing efforts toward validating the buildup factor method and the BRYNTRN code, which use the deterministic approach in solving radiation transport problems and are the candidate engineering tools in space radiation shielding analyses, are presented. A simplified theory of proton buildup factors assuming no neutron coupling is derived to verify a previously chosen form for parameterizing the dose conversion factor that includes the secondary particle buildup effect. Estimates of dose in tissue made by the two deterministic approaches and the Monte Carlo method are intercompared for cases with various thicknesses of shields and various types of proton spectra. The results are found to be in reasonable agreement but with some overestimation by the buildup factor method when the effect of neutron production in the shield is significant. Future improvement to include neutron coupling in the buildup factor theory is suggested to alleviate this shortcoming. Impressive agreement for individual components of doses, such as those from the secondaries and heavy particle recoils, are obtained between BRYNTRN and Monte Carlo results.

  15. Monte Carlo Simulation of the Transport of Electrons in Semi-Infinite Solids:. the Effect of the First Transport Cross-Section

    NASA Astrophysics Data System (ADS)

    Bentabet, A.

    The purpose of this work is to show the hidden effect of the first transport cross-section in the study of the beam electrons transport impinging in solid targets by using the Monte Carlo method. For this, our study is based on our model of differential elastic cross-section given [A. Bentabet, Z. Chaoui, A. Aydin and A. Azbouche, Vacuum 85 (2010) 156] by leaving only one free parameter adjusted, on one hand, to the elastic total cross-section and to transport cross-section, on the other hand. We think that this work is useful for those who develop semi-empirical or analytical models of elastic cross-sections. The present work deals with the total elastic cross-section, the first transport cross-section, the diffusion polar angle and the backscattering coefficient, from low energy electrons, normally incident, impinging on Al, Si, Ag and Au solid targets, where the results are compared to those of the literature and discussed.

  16. Estimating the pixel footprint distribution for image fusion by ray tracing lines of sight in a Monte Carlo scheme

    NASA Astrophysics Data System (ADS)

    Opsahl, T.; Haavardsholm, T. V.

    2013-05-01

    Images from airborne cameras can be a valuable resource for data fusion, but this typically requires them to be georeferenced. This usually implies that the information of every pixel should be accompanied by a single geographical position describing where the center of the pixel is located in the scene. This geospatial information is well suited for tasks like target positioning and orthorectification. But when it comes to fusion, a detailed description of the area on the ground contributing to the pixel signal would be preferable over a single position. In this paper we present a method for estimating these regions. Simple Monte Carlo simulations are used to combine the influences of the main geometrical aspects of the imaging process, such as the point spread function, the camera's motion and the topography in the scene. Since estimates of the camera motion are uncertain to some degree, this is incorporated in the simulations as well. For every simulation, a pixel's sampling point in the scene is estimated by intersecting a randomly sampled line of sight with a 3D-model of the scene. Based on the results of numerous simulations, the pixel's sampling region can be represented by a suitable probability distribution. This will be referred to as the pixel's footprint distribution (PFD). We present results for high resolution hyperspectral pushbroom images of an urban scene.

  17. Delta f Monte Carlo Calculation Of Neoclassical Transport In Perturbed Tokamaks

    SciTech Connect

    Kim, Kimin; Park, Jong-Kyu; Kramer, Gerrit; Boozer, Allen H.

    2012-04-11

    Non-axisymmetric magnetic perturbations can fundamentally change neoclassical transport in tokamaks by distorting particle orbits on deformed or broken flux surfaces. This so-called non-ambipolar transport is highly complex, and eventually a numerical simulation is required to achieve its precise description and understanding. A new delta f particle code (POCA) has been developed for this purpose using a modi ed pitch angle collision operator preserving momentum conservation. POCA was successfully benchmarked for neoclassical transport and momentum conservation in axisymmetric con guration. Non-ambipolar particle flux is calculated in the non-axisymmetric case, and results show a clear resonant nature of non-ambipolar transport and magnetic braking. Neoclassical toroidal viscosity (NTV) torque is calculated using anisotropic pressures and magnetic fi eld spectrum, and compared with the generalized NTV theory. Calculations indicate a clear B2 dependence of NTV, and good agreements with theory on NTV torque pro les and amplitudes depending on collisionality.

  18. Enhancements to the Combinatorial Geometry Particle Tracker in the Mercury Monte Carlo Transport Code: Embedded Meshes and Domain Decomposition

    SciTech Connect

    Greenman, G M; O'Brien, M J; Procassini, R J; Joy, K I

    2009-03-09

    Two enhancements to the combinatorial geometry (CG) particle tracker in the Mercury Monte Carlo transport code are presented. The first enhancement is a hybrid particle tracker wherein a mesh region is embedded within a CG region. This method permits efficient calculations of problems with contain both large-scale heterogeneous and homogeneous regions. The second enhancement relates to the addition of parallelism within the CG tracker via spatial domain decomposition. This permits calculations of problems with a large degree of geometric complexity, which are not possible through particle parallelism alone. In this method, the cells are decomposed across processors and a particles is communicated to an adjacent processor when it tracks to an interprocessor boundary. Applications that demonstrate the efficacy of these new methods are presented.

  19. Study of the response of a lithium yttrium borate scintillator based neutron rem counter by Monte Carlo radiation transport simulations

    NASA Astrophysics Data System (ADS)

    Sunil, C.; Tyagi, Mohit; Biju, K.; Shanbhag, A. A.; Bandyopadhyay, T.

    2015-12-01

    The scarcity and the high cost of 3He has spurred the use of various detectors for neutron monitoring. A new lithium yttrium borate scintillator developed in BARC has been studied for its use in a neutron rem counter. The scintillator is made of natural lithium and boron, and the yield of reaction products that will generate a signal in a real time detector has been studied by FLUKA Monte Carlo radiation transport code. A 2 cm lead introduced to enhance the gamma rejection shows no appreciable change in the shape of the fluence response or in the yield of reaction products. The fluence response when normalized at the average energy of an Am-Be neutron source shows promise of being used as rem counter.

  20. Radiation transport requirements for clinical applications of neutron capture therapy: The rtt-MC Monte Carlo module

    SciTech Connect

    Wheeler, F.J.; Wessol, D.E.

    1995-12-31

    The rtt-MC dose calculation module of the BNCT-Rtpe treatment planning system has been developed specifically for boron neutron cancer therapy. Due to the complicated nature of combined gamma, fast-, epithermal- and thermal-energy neutron transport in tissue, all approaches to treatment planning to date for this treatment modality rely on Monte Carlo or three-dimensional discrete ordinates methods. Simple, fast and accurate methods for this modality have simply not been developed. In this paper the authors discuss some of the unique attributes of this therapy and the approaches they have used to begin to merge into clinical applications. As this paper is under draft, the modern implementation of boron neutron cancer therapy in the US is being realized. Research of skin and tumor effect for superficial melanoma of the extremities has been initiated at the Massachusetts Institute of Technology and brain cancer therapy (using this planning system) has begun at Brookhaven National Laboratory.

  1. Simulation of the full-core pin-model by JMCT Monte Carlo neutron-photon transport code

    SciTech Connect

    Li, D.; Li, G.; Zhang, B.; Shu, L.; Shangguan, D.; Ma, Y.; Hu, Z.

    2013-07-01

    Since the large numbers of cells over a million, the tallies over a hundred million and the particle histories over ten billion, the simulation of the full-core pin-by-pin model has become a real challenge for the computers and the computational methods. On the other hand, the basic memory of the model has exceeded the limit of a single CPU, so the spatial domain and data decomposition must be considered. JMCT (J Monte Carlo Transport code) has successful fulfilled the simulation of the full-core pin-by-pin model by the domain decomposition and the nested parallel computation. The k{sub eff} and flux of each cell are obtained. (authors)

  2. Monte Carlo Code System for High-Energy Radiation Transport Calculations.

    SciTech Connect

    FILGES, DETLEF

    2000-02-16

    Version 00 HERMES-KFA consists of a set of Monte Carlo Codes used to simulate particle radiation and interaction with matter. The main codes are HETC, MORSE, and EGS. They are supported by a common geometry package, common random routines, a command interpreter, and auxiliary codes like NDEM that is used to generate a gamma-ray source from nuclear de-excitation after spallation processes. The codes have been modified so that any particle history falling outside the domain of the physical theory of one program can be submitted to another program in the suite to complete the work. Also response data can be submitted by each program, to be collected and combined by a statistic package included within the command interpreter.

  3. 8 CFR 241.9 - Notice to transportation line of alien's removal.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 8 Aliens and Nationality 1 2011-01-01 2011-01-01 false Notice to transportation line of alien's removal. 241.9 Section 241.9 Aliens and Nationality DEPARTMENT OF HOMELAND SECURITY IMMIGRATION REGULATIONS APPREHENSION AND DETENTION OF ALIENS ORDERED REMOVED Post-hearing Detention and Removal § 241.9 Notice to transportation line of alien's...

  4. 8 CFR 241.9 - Notice to transportation line of alien's removal.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 8 Aliens and Nationality 1 2013-01-01 2013-01-01 false Notice to transportation line of alien's removal. 241.9 Section 241.9 Aliens and Nationality DEPARTMENT OF HOMELAND SECURITY IMMIGRATION REGULATIONS APPREHENSION AND DETENTION OF ALIENS ORDERED REMOVED Post-hearing Detention and Removal § 241.9 Notice to transportation line of alien's...

  5. Implementation of tetrahedral-mesh geometry in Monte Carlo radiation transport code PHITS.

    PubMed

    Furuta, Takuya; Sato, Tatsuhiko; Han, Min; Yeom, Yeon; Kim, Chan; Brown, Justin; Bolch, Wesley

    2017-04-04

    A new function to treat tetrahedral-mesh geometry was implemented in the Particle and Heavy Ion Transport code Systems (PHITS). To accelerate the computational speed in the transport process, an original algorithm was introduced to initially prepare decomposition maps for the container box of the tetrahedral-mesh geometry. The computational performance was tested by conducting radiation transport simulations of 100 MeV protons and 1 MeV photons in a water phantom represented by tetrahedral mesh. The simulation was repeated with varying number of meshes and the required computational times were then compared with those of the conventional voxel representation. Our results show that the computational costs for each boundary crossing of the region mesh are essentially equivalent for both representations. This study suggests that the tetrahedral-mesh representation offers not only a flexible description of the transport geometry but also improvement of computational efficiency for the radiation transport. Due to the adaptability of tetrahedrons in both size and shape, dosimetrically equivalent objects can be represented by tetrahedrons with a much fewer number of meshes as compared its voxelized representation. Our study additionally included dosimetric calculations using a computational human phantom. A significant acceleration of the computational speed, about 4 times, was confirmed by the adoption of a tetrahedral mesh over the traditional voxel mesh geometry.

  6. Implementation of tetrahedral-mesh geometry in Monte Carlo radiation transport code PHITS

    NASA Astrophysics Data System (ADS)

    Furuta, Takuya; Sato, Tatsuhiko; Han, Min Cheol; Yeom, Yeon Soo; Kim, Chan Hyeong; Brown, Justin L.; Bolch, Wesley E.

    2017-06-01

    A new function to treat tetrahedral-mesh geometry was implemented in the particle and heavy ion transport code systems. To accelerate the computational speed in the transport process, an original algorithm was introduced to initially prepare decomposition maps for the container box of the tetrahedral-mesh geometry. The computational performance was tested by conducting radiation transport simulations of 100 MeV protons and 1 MeV photons in a water phantom represented by tetrahedral mesh. The simulation was repeated with varying number of meshes and the required computational times were then compared with those of the conventional voxel representation. Our results show that the computational costs for each boundary crossing of the region mesh are essentially equivalent for both representations. This study suggests that the tetrahedral-mesh representation offers not only a flexible description of the transport geometry but also improvement of computational efficiency for the radiation transport. Due to the adaptability of tetrahedrons in both size and shape, dosimetrically equivalent objects can be represented by tetrahedrons with a much fewer number of meshes as compared its voxelized representation. Our study additionally included dosimetric calculations using a computational human phantom. A significant acceleration of the computational speed, about 4 times, was confirmed by the adoption of a tetrahedral mesh over the traditional voxel mesh geometry.

  7. Transmutation approximations for the application of hybrid Monte Carlo/deterministic neutron transport to shutdown dose rate analysis

    DOE PAGES

    Biondo, Elliott D.; Wilson, Paul P. H.

    2017-05-08

    In fusion energy systems (FES) neutrons born from burning plasma activate system components. The photon dose rate after shutdown from resulting radionuclides must be quantified. This shutdown dose rate (SDR) is calculated by coupling neutron transport, activation analysis, and photon transport. The size, complexity, and attenuating configuration of FES motivate the use of hybrid Monte Carlo (MC)/deterministic neutron transport. The Multi-Step Consistent Adjoint Driven Importance Sampling (MS-CADIS) method can be used to optimize MC neutron transport for coupled multiphysics problems, including SDR analysis, using deterministic estimates of adjoint flux distributions. When used for SDR analysis, MS-CADIS requires the formulation ofmore » an adjoint neutron source that approximates the transmutation process. In this work, transmutation approximations are used to derive a solution for this adjoint neutron source. It is shown that these approximations are reasonably met for typical FES neutron spectra and materials over a range of irradiation scenarios. When these approximations are met, the Groupwise Transmutation (GT)-CADIS method, proposed here, can be used effectively. GT-CADIS is an implementation of the MS-CADIS method for SDR analysis that uses a series of single-energy-group irradiations to calculate the adjoint neutron source. For a simple SDR problem, GT-CADIS provides speedups of 200 100 relative to global variance reduction with the Forward-Weighted (FW)-CADIS method and 9 ± 5 • 104 relative to analog. As a result, this work shows that GT-CADIS is broadly applicable to FES problems and will significantly reduce the computational resources necessary for SDR analysis.« less

  8. {delta}f Monte Carlo calculation of neoclassical transport in perturbed tokamaks

    SciTech Connect

    Kim, Kimin; Park, Jong-Kyu; Kramer, Gerrit J.; Boozer, Allen H.

    2012-08-15

    Non-axisymmetric magnetic perturbations can fundamentally change neoclassical transport in tokamaks by distorting particle orbits on deformed or broken flux surfaces. This so-called non-ambipolar transport is highly complex, and eventually a numerical simulation is required to achieve its precise description and understanding. A new {delta}f particle orbit code (POCA) has been developed for this purpose using a modified pitch-angle collision operator preserving momentum conservation. POCA was successfully benchmarked for neoclassical transport and momentum conservation in the axisymmetric configuration. Non-ambipolar particle flux is calculated in the non-axisymmetric case, and the results show a clear resonant nature of non-ambipolar transport and magnetic braking. Neoclassical toroidal viscosity (NTV) torque is calculated using anisotropic pressures and magnetic field spectrum, and compared with the combined and 1/{nu} NTV theory. Calculations indicate a clear {delta}B{sup 2} scaling of NTV, and good agreement with the theory on NTV torque profiles and amplitudes depending on collisionality.

  9. Voxel2MCNP: software for handling voxel models for Monte Carlo radiation transport calculations.

    PubMed

    Hegenbart, Lars; Pölz, Stefan; Benzler, Andreas; Urban, Manfred

    2012-02-01

    Voxel2MCNP is a program that sets up radiation protection scenarios with voxel models and generates corresponding input files for the Monte Carlo code MCNPX. Its technology is based on object-oriented programming, and the development is platform-independent. It has a user-friendly graphical interface including a two- and three-dimensional viewer. A row of equipment models is implemented in the program. Various voxel model file formats are supported. Applications include calculation of counting efficiency of in vivo measurement scenarios and calculation of dose coefficients for internal and external radiation scenarios. Moreover, anthropometric parameters of voxel models, for instance chest wall thickness, can be determined. Voxel2MCNP offers several methods for voxel model manipulations including image registration techniques. The authors demonstrate the validity of the program results and provide references for previous successful implementations. The authors illustrate the reliability of calculated dose conversion factors and specific absorbed fractions. Voxel2MCNP is used on a regular basis to generate virtual radiation protection scenarios at Karlsruhe Institute of Technology while further improvements and developments are ongoing.

  10. Path-integral Monte Carlo simulations for electronic dynamics on molecular chains. II. Transport across impurities

    NASA Astrophysics Data System (ADS)

    Mühlbacher, Lothar; Ankerhold, Joachim

    2005-05-01

    Electron transfer (ET) across molecular chains including an impurity is studied based on a recently improved real-time path-integral Monte Carlo (PIMC) approach [L. Mühlbacher, J. Ankerhold, and C. Escher, J. Chem. Phys. 121 12696 (2004)]. The reduced electronic dynamics is studied for various bridge lengths and defect site energies. By determining intersite hopping rates from PIMC simulations up to moderate times, the relaxation process in the extreme long-time limit is captured within a sequential transfer model. The total transfer rate is extracted and shown to be enhanced for certain defect site energies. Superexchange turns out to be relevant for extreme gap energies only and then gives rise to different dynamical signatures for high- and low-lying defects. Further, it is revealed that the entire bridge compound approaches a steady state on a much shorter time scale than that related to the total transfer. This allows for a simplified description of ET along donor-bridge-acceptor systems in the long-time range.

  11. High-resolution monte carlo simulation of flow and conservative transport in heterogeneous porous media 1. Methodology and flow results

    USGS Publications Warehouse

    Naff, R.L.; Haley, D.F.; Sudicky, E.A.

    1998-01-01

    In this, the first of two papers concerned with the use of numerical simulation to examine flow and transport parameters in heterogeneous porous media via Monte Carlo methods, Various aspects of the modelling effort are examined. In particular, the need to save on core memory causes one to use only specific realizations that have certain initial characteristics; in effect, these transport simulations are conditioned by these characteristics. Also, the need to independently estimate length Scales for the generated fields is discussed. The statistical uniformity of the flow field is investigated by plotting the variance of the seepage velocity for vector components in the x, y, and z directions. Finally, specific features of the velocity field itself are illuminated in this first paper. In particular, these data give one the opportunity to investigate the effective hydraulic conductivity in a flow field which is approximately statistically uniform; comparisons are made with first- and second-order perturbation analyses. The mean cloud velocity is examined to ascertain whether it is identical to the mean seepage velocity of the model. Finally, the variance in the cloud centroid velocity is examined for the effect of source size and differing strengths of local transverse dispersion.

  12. Improving Electron Transport Simulation in Mesoscopic Systems by Coupling a Classical Monte Carlo Algorithm to a Wigner Function Solver

    NASA Astrophysics Data System (ADS)

    García-García, J.; Martín, F.; Oriols, X.; Suñé, J.

    Because of its high switching speed, low power consumption and reduced complexity to implement a given function, resonant tunneling diodes (RTD's) have been recently recognized as excellent candidates for digital circuit applications [1]. Device modeling and simulation is thus important, not only to understand mesoscopic transport properties, but also to provide guidance in optimal device design and fabrication. Several approaches have been used to this end. Among kinetic models, those based on the non-equilibrium Green function formalism [2] have gained increasing interest due to their ability to incorporate coherent and incoherent interactions in a unified formulation. The Wigner distribution function approach has been also extensively used to study quantum transport in RTD's [3-6]. The main limitations of this formulation are the semiclassical treatment of carrier-phonon interactions by means of the relaxation time approximation and the huge computational burden associated to the self-consistent solution of Liouville and Poisson equations. This has imposed severe limitations on spatial domains, these being too small to succeed in the development of reliable simulation tools. Based on the Wigner function approach, we have developed a simulation tool that allows to extend the simulation domains up to hundreds of nanometers without a significant increase in computer time [7]. This tool is based on the coupling between the Wigner distribution function (quantum Liouville equation) and the Boltzmann transport equation. The former is applied to the active region of the device including the double barrier, where quantum effects are present (quantum window, QW). The latter is solved by means of a Monte Carlo algorithm and applied to the outer regions of the device, where quantum effects are not expected to occur. Since the classical Monte Carlo algorithm is much less time consuming than the discretized version of the Wigner transport equation, we can considerably

  13. A Monte Carlo Code for Relativistic Radiation Transport Around Kerr Black Holes

    NASA Technical Reports Server (NTRS)

    Schnittman, Jeremy David; Krolik, Julian H.

    2013-01-01

    We present a new code for radiation transport around Kerr black holes, including arbitrary emission and absorption mechanisms, as well as electron scattering and polarization. The code is particularly useful for analyzing accretion flows made up of optically thick disks and optically thin coronae. We give a detailed description of the methods employed in the code and also present results from a number of numerical tests to assess its accuracy and convergence.

  14. A MONTE CARLO CODE FOR RELATIVISTIC RADIATION TRANSPORT AROUND KERR BLACK HOLES

    SciTech Connect

    Schnittman, Jeremy D.; Krolik, Julian H. E-mail: jhk@pha.jhu.edu

    2013-11-01

    We present a new code for radiation transport around Kerr black holes, including arbitrary emission and absorption mechanisms, as well as electron scattering and polarization. The code is particularly useful for analyzing accretion flows made up of optically thick disks and optically thin coronae. We give a detailed description of the methods employed in the code and also present results from a number of numerical tests to assess its accuracy and convergence.

  15. Monte Carlo N-Particle Transport Code System To Simulate Time-Analysis Quantities.

    SciTech Connect

    PADOVANI, ENRICO

    2012-04-15

    Version: 00 US DOE 10CFR810 Jurisdiction. The Monte Carlo simulation of correlation measurements that rely on the detection of fast neutrons and photons from fission requires that particle emissions and interactions following a fission event be described as close to reality as possible. The -PoliMi extension to MCNP and to MCNPX was developed to simulate correlated-particle and the subsequent interactions as close as possible to the physical behavior. Initially, MCNP-PoliMi, a modification of MCNP4C, was developed. The first version was developed in 2001-2002 and released in early 2004 to the Radiation Safety Information Computational Center (RSICC). It was developed for research purposes, to simulate correlated counts in organic scintillation detectors, sensitive to fast neutrons and gamma rays. Originally, the field of application was nuclear safeguards; however subsequent improvements have enhanced the ability to model measurements in other research fields as well. During 2010-2011 the -PoliMi modification was ported into MCNPX-2.7.0, leading to the development of MCNPX-PoliMi. Now the -PoliMi v2.0 modifications are distributed as a patch to MCNPX-2.7.0 which currently is distributed in the RSICC PACKAGE BCC-004 MCNP6_BETA2/MCNP5/MCNPX. Also included in the package is MPPost, a versatile code that provides simulated detector response. By taking advantage of the modifications in MCNPX-PoliMi, MPPost can provide an accurate simulation of the detector response for a variety of detection scenarios.

  16. Monte Carlo N-Particle Transport Code System To Simulate Time-Analysis Quantities.

    SciTech Connect

    PADOVANI, ENRICO

    2012-04-15

    Version: 00 US DOE 10CFR810 Jurisdiction. The Monte Carlo simulation of correlation measurements that rely on the detection of fast neutrons and photons from fission requires that particle emissions and interactions following a fission event be described as close to reality as possible. The -PoliMi extension to MCNP and to MCNPX was developed to simulate correlated-particle and the subsequent interactions as close as possible to the physical behavior. Initially, MCNP-PoliMi, a modification of MCNP4C, was developed. The first version was developed in 2001-2002 and released in early 2004 to the Radiation Safety Information Computational Center (RSICC). It was developed for research purposes, to simulate correlated counts in organic scintillation detectors, sensitive to fast neutrons and gamma rays. Originally, the field of application was nuclear safeguards; however subsequent improvements have enhanced the ability to model measurements in other research fields as well. During 2010-2011 the -PoliMi modification was ported into MCNPX-2.7.0, leading to the development of MCNPX-PoliMi. Now the -PoliMi v2.0 modifications are distributed as a patch to MCNPX-2.7.0 which currently is distributed in the RSICC PACKAGE BCC-004 MCNP6_BETA2/MCNP5/MCNPX. Also included in the package is MPPost, a versatile code that provides simulated detector response. By taking advantage of the modifications in MCNPX-PoliMi, MPPost can provide an accurate simulation of the detector response for a variety of detection scenarios.

  17. Combined Monte Carlo and Fluid Sputter Transport Model in an Ionized PVD System with Experimental Plasma Characterization

    NASA Astrophysics Data System (ADS)

    Ruzic, David N.; Juliano, Daniel R.; Hayden, Douglas B.; Allain, Monica M. C.

    1998-10-01

    A code has been developed to model the transport of sputtered material in a modified industrial-scale magnetron. The device has a target diameter of 355 mm and was designed for 200 mm substrates. The chamber has been retrofitted with an auxilliary RF inductive plasma source located between the target and substrate. The source consists of a water-cooled copper coil immersed in the plasma, but with a diameter large enough to prevent shadowing of the substrate. The RF plasma, target sputter flux distribution, background gas conditions, and geometry are all inputs to the code. The plasma is characterized via a combination of a Langmuir probe apparatus and the results of a simple analytic model of the ICP system. The source of sputtered atoms from the target is found through measurements of the depth of the sputter track in an eroded target and the distribution of the sputter flux is calculated via VFTRIM. A Monte Carlo routine tracks high energy atoms emerging from the target as they move through the chamber and undergo collisions with the electrons and background gas. The sputtered atoms are tracked by this routine whatever their electronic state (neutral, excited, or ion). If the energy of a sputtered atom decreases to near-thermal levels, then it exits the Monte Carlo routine as is tracked with a simple diffusion model. In this way, all sputtered atoms are followed until they hit and stick to a surface, and the velocity distribution of the sputtered atom population (including electronic state information) at each surface is calculated, especially the substrate. Through the use of this simulation the coil parameters and geometry can be tailored to maximize deposition rate and sputter flux uniformity.

  18. Effects of Escherichia coli Challenge and Transport Stress on Hematology and Serum Chemistry Values of Three Genetic Lines of Turkeys

    USDA-ARS?s Scientific Manuscript database

    Males and females from 3 genetic lines of turkeys were compared for their response to an Escherichia coli airsac challenge followed by transport stress (Transport). The turkey lines were a slow growing line selected for increased egg production (Egg line), a fast growing line selected for increased...

  19. Transport line for beam generated by ITEP Bernas ion source

    SciTech Connect

    Petrenko, S.V.; Kropachev, G.N.; Kuibeda, R.P.; Kulevoy, T.V.; Pershin, V.I.; Masunov, E.S.; Polozov, S.M.; Hershcovitch, A.; Johnson, B.M.; Poole, H.J.

    2006-03-15

    A joint research and development program is underway to investigate beam transport systems for intense steady-state ion sources for ion implanters. Two energy extremes of MeV and hundreds of eV are investigated using a modified Bernas ion source with an indirectly heated cathode. Results are presented for simulations of electrostatic systems performed to investigate the transportation of ion beams over a wide mass range: boron to decaborane.

  20. Monte Carlo electron-photon transport using GPUs as an accelerator: Results for a water-aluminum-water phantom

    SciTech Connect

    Su, L.; Du, X.; Liu, T.; Xu, X. G.

    2013-07-01

    An electron-photon coupled Monte Carlo code ARCHER - Accelerated Radiation-transport Computations in Heterogeneous Environments - is being developed at Rensselaer Polytechnic Institute as a software test bed for emerging heterogeneous high performance computers that utilize accelerators such as GPUs. In this paper, the preliminary results of code development and testing are presented. The electron transport in media was modeled using the class-II condensed history method. The electron energy considered ranges from a few hundred keV to 30 MeV. Moller scattering and bremsstrahlung processes above a preset energy were explicitly modeled. Energy loss below that threshold was accounted for using the Continuously Slowing Down Approximation (CSDA). Photon transport was dealt with using the delta tracking method. Photoelectric effect, Compton scattering and pair production were modeled. Voxelised geometry was supported. A serial ARHCHER-CPU was first written in C++. The code was then ported to the GPU platform using CUDA C. The hardware involved a desktop PC with an Intel Xeon X5660 CPU and six NVIDIA Tesla M2090 GPUs. ARHCHER was tested for a case of 20 MeV electron beam incident perpendicularly on a water-aluminum-water phantom. The depth and lateral dose profiles were found to agree with results obtained from well tested MC codes. Using six GPU cards, 6x10{sup 6} histories of electrons were simulated within 2 seconds. In comparison, the same case running the EGSnrc and MCNPX codes required 1645 seconds and 9213 seconds, respectively, on a CPU with a single core used. (authors)

  1. FASTER 3: A generalized-geometry Monte Carlo computer program for the transport of neutrons and gamma rays. Volume 2: Users manual

    NASA Technical Reports Server (NTRS)

    Jordan, T. M.

    1970-01-01

    A description of the FASTER-III program for Monte Carlo Carlo calculation of photon and neutron transport in complex geometries is presented. Major revisions include the capability of calculating minimum weight shield configurations for primary and secondary radiation and optimal importance sampling parameters. The program description includes a users manual describing the preparation of input data cards, the printout from a sample problem including the data card images, definitions of Fortran variables, the program logic, and the control cards required to run on the IBM 7094, IBM 360, UNIVAC 1108 and CDC 6600 computers.

  2. Development and Implementation of Photonuclear Cross-Section Data for Mutually Coupled Neutron-Photon Transport Calculations in the Monte Carlo N-Particle (MCNP) Radiation Transport Code

    SciTech Connect

    White, Morgan C.

    2000-07-01

    The fundamental motivation for the research presented in this dissertation was the need to development a more accurate prediction method for characterization of mixed radiation fields around medical electron accelerators (MEAs). Specifically, a model is developed for simulation of neutron and other particle production from photonuclear reactions and incorporated in the Monte Carlo N-Particle (MCNP) radiation transport code. This extension of the capability within the MCNP code provides for the more accurate assessment of the mixed radiation fields. The Nuclear Theory and Applications group of the Los Alamos National Laboratory has recently provided first-of-a-kind evaluated photonuclear data for a select group of isotopes. These data provide the reaction probabilities as functions of incident photon energy with angular and energy distribution information for all reaction products. The availability of these data is the cornerstone of the new methodology for state-of-the-art mutually coupled photon-neutron transport simulations. The dissertation includes details of the model development and implementation necessary to use the new photonuclear data within MCNP simulations. A new data format has been developed to include tabular photonuclear data. Data are processed from the Evaluated Nuclear Data Format (ENDF) to the new class ''u'' A Compact ENDF (ACE) format using a standalone processing code. MCNP modifications have been completed to enable Monte Carlo sampling of photonuclear reactions. Note that both neutron and gamma production are included in the present model. The new capability has been subjected to extensive verification and validation (V&V) testing. Verification testing has established the expected basic functionality. Two validation projects were undertaken. First, comparisons were made to benchmark data from literature. These calculations demonstrate the accuracy of the new data and transport routines to better than 25 percent. Second, the ability to

  3. RF kicker cavity to increase control in common transport lines

    DOEpatents

    Douglas, David R.; Ament, Lucas J. P.

    2017-04-18

    A method of controlling e-beam transport where electron bunches with different characteristics travel through the same beam pipe. An RF kicker cavity is added at the beginning of the common transport pipe or at various locations along the common transport path to achieve independent control of different bunch types. RF energy is applied by the kicker cavity kicks some portion of the electron bunches, separating the bunches in phase space to allow independent control via optics, or separating bunches into different beam pipes. The RF kicker cavity is operated at a specific frequency to enable kicking of different types of bunches in different directions. The phase of the cavity is set such that the selected type of bunch passes through the cavity when the RF field is at a node, leaving that type of bunch unaffected. Beam optics may be added downstream of the kicker cavity to cause a further separation in phase space.

  4. An agarose-gel based method for transporting cell lines.

    PubMed

    Yang, Lingzhi; Li, Chufang; Chen, Ling; Li, Zhiyuan

    2009-12-16

    Cryopreserved cells stored in dry ice or liquid nitrogen is the classical method for transporting cells between research laboratories in different cities around the world in order to maintain cell viability. An alternative method is to ship the live cells in flasks filled with cell culture medium. Both methods have limitations of either a requirement on special shipping container or short times for the cells to survive on the shipping process. We have recently developed an agarose gel based method for directly transporting the live adherent cells in cell culture plates or dishes in ambient temperature. This convenient method simplifies the transportation of live cells in long distance that can maintain cells in good viability for several days.

  5. A graphics-card implementation of Monte-Carlo simulations for cosmic-ray transport

    NASA Astrophysics Data System (ADS)

    Tautz, R. C.

    2016-05-01

    A graphics card implementation of a test-particle simulation code is presented that is based on the CUDA extension of the C/C++ programming language. The original CPU version has been developed for the calculation of cosmic-ray diffusion coefficients in artificial Kolmogorov-type turbulence. In the new implementation, the magnetic turbulence generation, which is the most time-consuming part, is separated from the particle transport and is performed on a graphics card. In this article, the modification of the basic approach of integrating test particle trajectories to employ the SIMD (single instruction, multiple data) model is presented and verified. The efficiency of the new code is tested and several language-specific accelerating factors are discussed. For the example of isotropic magnetostatic turbulence, sample results are shown and a comparison to the results of the CPU implementation is performed.

  6. Error analysis in post linac to driver linac transport beam line of RAON

    NASA Astrophysics Data System (ADS)

    Kim, Chanmi; Kim, Eun-San

    2016-07-01

    We investigated the effects of magnet errors in the beam transport line connecting the post linac to the driver linac (P2DT) in the Rare Isotope Accelerator in Korea (RAON). The P2DT beam line is bent by 180-degree to send the radioactive Isotope Separation On-line (ISOL) beams accelerated in Linac-3 to Linac-2. This beam line transports beams with multi-charge state 132Sn45,46,47. The P2DT beam line includes 42 quadrupole, 4 dipole and 10 sextupole magnets. We evaluate the effects of errors on the trajectory of the beam by using the TRACK code, which includes the translational and the rotational errors of the quadrupole, dipole and sextupole magnets in the beam line. The purpose of this error analysis is to reduce the rate of beam loss in the P2DT beam line. The distorted beam trajectories can be corrected by using six correctors and seven monitors.

  7. Waterborne Transportation Lines of the United States 1987

    DTIC Science & Technology

    1988-10-01

    COAST I TER $ EIII l tIIII E D I 1 11/UI POlO I LINE-I IAO! LINE-1 I BUILT I VESSEL NAME AND HIJRBC4 I plato I TON_ IPAGel OVER-|OVER IIIII1 HORSE! PASS...30.11 110001 159171 114.8115 TON-t 66 TON ILA NEW 1 1972 I1 1 592.61 69.01 12.51 121 IELECTRIC BOONS I ORLEANS I I SOLON TURMAN 1285fS9 I7760|1A03! 567.61

  8. Resolving magnetic field line stochasticity and parallel thermal transport in MHD simulations

    SciTech Connect

    Nishimura, Y.; Callen, J.D.; Hegna, C.C.

    1998-12-31

    Heat transport along braided, or chaotic magnetic field lines is a key to understand the disruptive phase of tokamak operations, both the major disruption and the internal disruption (sawtooth oscillation). Recent sawtooth experimental results in the Tokamak Fusion Test Reactor (TFTR) have inferred that magnetic field line stochasticity in the vicinity of the q = 1 inversion radius plays an important role in rapid changes in the magnetic field structures and resultant thermal transport. In this study, the characteristic Lyapunov exponents and spatial correlation of field line behaviors are calculated to extract the characteristic scale length of the microscopic magnetic field structure (which is important for net radial global transport). These statistical values are used to model the effect of finite thermal transport along magnetic field lines in a physically consistent manner.

  9. 8 CFR 233.2 - Transportation lines bringing aliens to the United States from or through foreign contiguous...

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 8 Aliens and Nationality 1 2010-01-01 2010-01-01 false Transportation lines bringing aliens to the... Aliens and Nationality DEPARTMENT OF HOMELAND SECURITY IMMIGRATION REGULATIONS CONTRACTS WITH TRANSPORTATION LINES § 233.2 Transportation lines bringing aliens to the United States from or through...

  10. 8 CFR 233.2 - Transportation lines bringing aliens to the United States from or through foreign contiguous...

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 8 Aliens and Nationality 1 2014-01-01 2014-01-01 false Transportation lines bringing aliens to the... Aliens and Nationality DEPARTMENT OF HOMELAND SECURITY IMMIGRATION REGULATIONS CONTRACTS WITH TRANSPORTATION LINES § 233.2 Transportation lines bringing aliens to the United States from or through...

  11. FRC equilibrium reconstruction by Bayesian evaluation of Monte Carlo transport simulations

    NASA Astrophysics Data System (ADS)

    Rath, Nikolaus; Onofri, M.; Trask, E.; TAE Team

    2016-10-01

    Beam-driven field reversed configurations (FRCs) can be sustained for multiple ms. Many important properties of such FRCs can not be measured directly. When such properties are needed to guide experiments, they are either substituted by proxies (e.g. the excluded flux radius rΔΦ is used instead of the separatrix radius rs), or derived from other measurements by imposing specific models (e.g. < T > is computed from ∫ n dl by assuming B2 nT). With increasing fast ion population these methods become increasingly inaccurate, so a third method has been developed. Transport simulations are run with a variety of model parameters and snapshots saved periodically, resulting in a pool of feasible plasma states. Synthetic measurements for each state are compared with experimental measurements, giving a probability distribution of states for each time-point in the experiment. Properties like rs and T are taken from the simulated state most consistent with measurements. The probability distribution gives a measure of the uncertainty in each parameter. The method validated by comparison with independent measurements. Reconstruction takes seconds per time-point. Tri Alpha Energy, Inc.

  12. Monte Carlo study of charge transport in organic sandwich-type single-carrier devices: Effects of Coulomb interactions

    NASA Astrophysics Data System (ADS)

    van der Holst, J. J. M.; van Oost, F. W. A.; Coehoorn, R.; Bobbert, P. A.

    2011-02-01

    We present the results of Monte Carlo simulations of transport of charge carriers of a single type in devices consisting of a disordered organic semiconductor sandwiched in between two electrodes. The simulations are based on hopping of carriers between sites with a Gaussian energetic distribution, which is either spatially uncorrelated or has a correlation based on interactions with randomly oriented dipoles. Coulomb interactions between the carriers are taken into account explicitly. For not too small injection barriers between the electrodes and the organic semiconductor, we find that the current obtained from the simulations can be described quite well by a one-dimensional drift-diffusion continuum model, which takes into account the long-range contributions of Coulomb interactions through the space-charge potential. For devices with low injection barriers, however, the simulations yield a considerably lower current than the continuum model. The reduction of the current for uncorrelated disorder is larger than for correlated disorder. By performing simulations in which the short-range contributions of the Coulomb interactions between the carriers are omitted, we demonstrate that the difference is caused by these short-range contributions. We can rationalize our results by analyzing the three-dimensional current distributions and the in-plane radial distribution function of the carriers resulting from the simulations for different injection barriers with and without taking into account these short-range contributions.

  13. GPU-Accelerated Monte Carlo Electron Transport Methods: Development and Application for Radiation Dose Calculations Using Six GPU cards

    NASA Astrophysics Data System (ADS)

    Su, Lin; Du, Xining; Liu, Tianyu; Xu, X. George

    2014-06-01

    An electron-photon coupled Monte Carlo code ARCHER - Accelerated Radiation-transport Computations in Heterogeneous EnviRonments - is being developed at Rensselaer Polytechnic Institute as a software testbed for emerging heterogeneous high performance computers that utilize accelerators such as GPUs. This paper presents the preliminary code development and the testing involving radiation dose related problems. In particular, the paper discusses the electron transport simulations using the class-II condensed history method. The considered electron energy ranges from a few hundreds of keV to 30 MeV. For photon part, photoelectric effect, Compton scattering and pair production were modeled. Voxelized geometry was supported. A serial CPU code was first written in C++. The code was then transplanted to the GPU using the CUDA C 5.0 standards. The hardware involved a desktop PC with an Intel Xeon X5660 CPU and six NVIDIA Tesla™ M2090 GPUs. The code was tested for a case of 20 MeV electron beam incident perpendicularly on a water-aluminum-water phantom. The depth and later dose profiles were found to agree with results obtained from well tested MC codes. Using six GPU cards, 6x106 electron histories were simulated within 2 seconds. In comparison, the same case running the EGSnrc and MCNPX codes required 1645 seconds and 9213 seconds, respectively. On-going work continues to test the code for different medical applications such as radiotherapy and brachytherapy.

  14. SU-E-T-794: Validation of the MCNPX Monte Carlo Model of the Ocular Beam Line at the Proton Therapy Center Houston

    SciTech Connect

    Titt, U; Suzuki, K

    2015-06-15

    Purpose: The PTCH is preparing the ocular proton beam nozzle for clinical use. Currently commissioning measurements are being performed using films, diodes and ionization chambers. In parallel, a Monte Carlo model of the beam line was created for integration into the automated Monte Carlo treatment plan computation system, MC{sup 2}. This work aims to compare Monte Carlo predictions to measured proton doses in order to validate the Monte Carlo model. Methods: A complete model of the double scattering ocular beam line has been created and is capable of simulating proton beams with a comprehensive set of beam modifying devices, including eleven different range modulator wheels. Simulations of doses in water were scored and compare to ion chamber measurements of depth doses, lateral dose profiles extracted from half beam block exposures of films, and diode measurements of lateral penumbrae at various depths. Results: All comparison resulted in an average relative entrance dose difference of less than 3% and peak dose difference of less than 2%. All range differences were smaller than 0.2 mm. The differences in the lateral beam profiles were smaller than 0.2 mm, and the differences in the penumbrae were all smaller than 0.4%. Conclusion: All available data shows excellent agreement of simulations and measurements. More measurements will have to be performed in order to completely and systematically validate the model. Besides simulating and measuring PDDs and lateral profiles of all remaining range modulator wheels, the absolute dosimetry factors in terms of number of source protons per monitor unit have to be determined.

  15. Kinetic Monte Carlo model of charge transport in hematite ({alpha}-Fe{sub 2}O{sub 3})

    SciTech Connect

    Kerisit, Sebastien; Rosso, Kevin M.

    2007-09-28

    The mobility of electrons injected into iron oxide minerals via abiotic and biotic electron transfer processes is one of the key factors that control the reductive dissolution of such minerals. Building upon our previous work on the computational modeling of elementary electron transfer reactions in iron oxide minerals using ab initio electronic structure calculations and parametrized molecular dynamics simulations, we have developed and implemented a kinetic Monte Carlo model of charge transport in hematite that integrates previous findings. The model aims to simulate the interplay between electron transfer processes for extended periods of time in lattices of increasing complexity. The electron transfer reactions considered here involve the II/III valence interchange between nearest-neighbor iron atoms via a small polaron hopping mechanism. The temperature dependence and anisotropic behavior of the electrical conductivity as predicted by our model are in good agreement with experimental data on hematite single crystals. In addition, we characterize the effect of electron polaron concentration and that of a range of defects on the electron mobility. Interaction potentials between electron polarons and fixed defects (iron substitution by divalent, tetravalent, and isovalent ions and iron and oxygen vacancies) are determined from atomistic simulations, based on the same model used to derive the electron transfer parameters, and show little deviation from the Coulombic interaction energy. Integration of the interaction potentials in the kinetic Monte Carlo simulations allows the electron polaron diffusion coefficient and density and residence time around defect sites to be determined as a function of polaron concentration in the presence of repulsive and attractive defects. The decrease in diffusion coefficient with polaron concentration follows a logarithmic function up to the highest concentration considered, i.e., {approx}2% of iron(III) sites, whereas the

  16. Technical Note: Study of the electron transport parameters used in PENELOPE for the Monte Carlo simulation of Linac targets

    SciTech Connect

    Rodriguez, Miguel; Sempau, Josep; Brualla, Lorenzo

    2015-06-15

    Purpose: The Monte Carlo simulation of electron transport in Linac targets using the condensed history technique is known to be problematic owing to a potential dependence of absorbed dose distributions on the electron step length. In the PENELOPE code, the step length is partially determined by the transport parameters C1 and C2. The authors have investigated the effect on the absorbed dose distribution of the values given to these parameters in the target. Methods: A monoenergetic 6.26 MeV electron pencil beam from a point source was simulated impinging normally on a cylindrical tungsten target. Electrons leaving the tungsten were discarded. Radial absorbed dose profiles were obtained at 1.5 cm of depth in a water phantom located at 100 cm for values of C1 and C2 in the target both equal to 0.1, 0.01, or 0.001. A detailed simulation case was also considered and taken as the reference. Additionally, lateral dose profiles were estimated and compared with experimental measurements for a 6 MV photon beam of a Varian Clinac 2100 for the cases of C1 and C2 both set to 0.1 or 0.001 in the target. Results: On the central axis, the dose obtained for the case C1 = C2 = 0.1 shows a deviation of (17.2% ± 1.2%) with respect to the detailed simulation. This difference decreases to (3.7% ± 1.2%) for the case C1 = C2 = 0.01. The case C1 = C2 = 0.001 produces a radial dose profile that is equivalent to that of the detailed simulation within the reached statistical uncertainty of 1%. The effect is also appreciable in the crossline dose profiles estimated for the realistic geometry of the Linac. In another simulation, it was shown that the error made by choosing inappropriate transport parameters can be masked by tuning the energy and focal spot size of the initial beam. Conclusions: The use of large path lengths for the condensed simulation of electrons in a Linac target with PENELOPE conducts to deviations of the dose in the patient or phantom. Based on the results obtained in

  17. Technical Note: Study of the electron transport parameters used in PENELOPE for the Monte Carlo simulation of Linac targets.

    PubMed

    Rodriguez, Miguel; Sempau, Josep; Brualla, Lorenzo

    2015-06-01

    The Monte Carlo simulation of electron transport in Linac targets using the condensed history technique is known to be problematic owing to a potential dependence of absorbed dose distributions on the electron step length. In the PENELOPE code, the step length is partially determined by the transport parameters C1 and C2. The authors have investigated the effect on the absorbed dose distribution of the values given to these parameters in the target. A monoenergetic 6.26 MeV electron pencil beam from a point source was simulated impinging normally on a cylindrical tungsten target. Electrons leaving the tungsten were discarded. Radial absorbed dose profiles were obtained at 1.5 cm of depth in a water phantom located at 100 cm for values of C1 and C2 in the target both equal to 0.1, 0.01, or 0.001. A detailed simulation case was also considered and taken as the reference. Additionally, lateral dose profiles were estimated and compared with experimental measurements for a 6 MV photon beam of a Varian Clinac 2100 for the cases of C1 and C2 both set to 0.1 or 0.001 in the target. On the central axis, the dose obtained for the case C1 = C2 = 0.1 shows a deviation of (17.2% ± 1.2%) with respect to the detailed simulation. This difference decreases to (3.7% ± 1.2%) for the case C1 = C2 = 0.01. The case C1 = C2 = 0.001 produces a radial dose profile that is equivalent to that of the detailed simulation within the reached statistical uncertainty of 1%. The effect is also appreciable in the crossline dose profiles estimated for the realistic geometry of the Linac. In another simulation, it was shown that the error made by choosing inappropriate transport parameters can be masked by tuning the energy and focal spot size of the initial beam. The use of large path lengths for the condensed simulation of electrons in a Linac target with PENELOPE conducts to deviations of the dose in the patient or phantom. Based on the results obtained in this work, values of C1 and C2 larger

  18. SU-E-T-112: An OpenCL-Based Cross-Platform Monte Carlo Dose Engine (oclMC) for Coupled Photon-Electron Transport

    SciTech Connect

    Tian, Z; Shi, F; Folkerts, M; Qin, N; Jiang, S; Jia, X

    2015-06-15

    Purpose: Low computational efficiency of Monte Carlo (MC) dose calculation impedes its clinical applications. Although a number of MC dose packages have been developed over the past few years, enabling fast MC dose calculations, most of these packages were developed under NVidia’s CUDA environment. This limited their code portability to other platforms, hindering the introduction of GPU-based MC dose engines to clinical practice. To solve this problem, we developed a cross-platform fast MC dose engine named oclMC under OpenCL environment for external photon and electron radiotherapy. Methods: Coupled photon-electron simulation was implemented with standard analogue simulation scheme for photon transport and Class II condensed history scheme for electron transport. We tested the accuracy and efficiency of oclMC by comparing the doses calculated using oclMC and gDPM, a previously developed GPU-based MC code on NVidia GPU platform, for a 15MeV electron beam and a 6MV photon beam in a homogenous water phantom, a water-bone-lung-water slab phantom and a half-slab phantom. We also tested code portability of oclMC on different devices, including an NVidia GPU, two AMD GPUs and an Intel CPU. Results: Satisfactory agreements were observed in all photon and electron cases, with ∼0.48%–0.53% average dose differences at regions within 10% isodose line for electron beam cases and ∼0.15%–0.17% for photon beam cases. It took oclMC 3–4 sec to perform transport simulation for electron beam on NVidia Titan GPU and 35–51 sec for photon beam, both with ∼0.5% statistical uncertainty. The computation was 6%–17% slower than gDPM due to the differences in both physics model and development environment, which is considered not significant for clinical applications. In terms of code portability, gDPM only runs on NVidia GPUs, while oclMC successfully runs on all the tested devices. Conclusion: oclMC is an accurate and fast MC dose engine. Its high cross

  19. Ensemble Monte Carlo simulation of electron transport in GaAs/AlAs quantum wire structure under the effect of terahertz electric field

    NASA Astrophysics Data System (ADS)

    Borzdov, Andrei V.; Borzdov, Vladimir M.; V'yurkov, Vladimir V.

    2016-12-01

    Ensemble Monte Carlo simulation of electron transport in GaAs/AlAs quantum wire transistor structure is performed. The response of electron drift velocity on the action of harmonic longitudinal electric field is calculated for several values of electric field strength amplitude and gate bias at 77 and 300 K. The periodical electric field has a 1 THz frequency. The nonlinear behaviour of electron drift velocity due to scattering processes is observed.

  20. Dosimetric accuracy of a deterministic radiation transport based {sup 192}Ir brachytherapy treatment planning system. Part III. Comparison to Monte Carlo simulation in voxelized anatomical computational models

    SciTech Connect

    Zourari, K.; Pantelis, E.; Moutsatsos, A.; Sakelliou, L.; Georgiou, E.; Karaiskos, P.; Papagiannis, P.

    2013-01-15

    Purpose: To compare TG43-based and Acuros deterministic radiation transport-based calculations of the BrachyVision treatment planning system (TPS) with corresponding Monte Carlo (MC) simulation results in heterogeneous patient geometries, in order to validate Acuros and quantify the accuracy improvement it marks relative to TG43. Methods: Dosimetric comparisons in the form of isodose lines, percentage dose difference maps, and dose volume histogram results were performed for two voxelized mathematical models resembling an esophageal and a breast brachytherapy patient, as well as an actual breast brachytherapy patient model. The mathematical models were converted to digital imaging and communications in medicine (DICOM) image series for input to the TPS. The MCNP5 v.1.40 general-purpose simulation code input files for each model were prepared using information derived from the corresponding DICOM RT exports from the TPS. Results: Comparisons of MC and TG43 results in all models showed significant differences, as reported previously in the literature and expected from the inability of the TG43 based algorithm to account for heterogeneities and model specific scatter conditions. A close agreement was observed between MC and Acuros results in all models except for a limited number of points that lay in the penumbra of perfectly shaped structures in the esophageal model, or at distances very close to the catheters in all models. Conclusions: Acuros marks a significant dosimetry improvement relative to TG43. The assessment of the clinical significance of this accuracy improvement requires further work. Mathematical patient equivalent models and models prepared from actual patient CT series are useful complementary tools in the methodology outlined in this series of works for the benchmarking of any advanced dose calculation algorithm beyond TG43.

  1. Performance and accuracy of criticality calculations performed using WARP – A framework for continuous energy Monte Carlo neutron transport in general 3D geometries on GPUs

    DOE PAGES

    Bergmann, Ryan M.; Rowland, Kelly L.; Radnović, Nikola; ...

    2017-05-01

    In this companion paper to "Algorithmic Choices in WARP - A Framework for Continuous Energy Monte Carlo Neutron Transport in General 3D Geometries on GPUs" (doi:10.1016/j.anucene.2014.10.039), the WARP Monte Carlo neutron transport framework for graphics processing units (GPUs) is benchmarked against production-level central processing unit (CPU) Monte Carlo neutron transport codes for both performance and accuracy. We compare neutron flux spectra, multiplication factors, runtimes, speedup factors, and costs of various GPU and CPU platforms running either WARP, Serpent 2.1.24, or MCNP 6.1. WARP compares well with the results of the production-level codes, and it is shown that on the newestmore » hardware considered, GPU platforms running WARP are between 0.8 to 7.6 times as fast as CPU platforms running production codes. Also, the GPU platforms running WARP were between 15% and 50% as expensive to purchase and between 80% to 90% as expensive to operate as equivalent CPU platforms performing at an equal simulation rate.« less

  2. Quasilinear Line Broadened Model for Energetic Particle Transport

    NASA Astrophysics Data System (ADS)

    Ghantous, Katy; Gorelenkov, Nikolai; Berk, Herbert

    2011-10-01

    We present a self-consistent quasi-linear model that describes wave-particle interaction in toroidal geometry and computes fast ion transport during TAE mode evolution. The model bridges the gap between single mode resonances, where it predicts the analytically expected saturation levels, and the case of multiple modes overlapping, where particles diffuse across phase space. Results are presented in the large aspect ratio limit where analytic expressions are used for Fourier harmonics of the power exchange between waves and particles, . Implemention of a more realistic mode structure calculated by NOVAK code are also presented. This work is funded by DOE contract DE-AC02-09CH11466.

  3. FASTER 3: A generalized-geometry Monte Carlo computer program for the transport of neutrons and gamma rays. Volume 1: Summary report

    NASA Technical Reports Server (NTRS)

    Jordan, T. M.

    1970-01-01

    The theory used in FASTER-III, a Monte Carlo computer program for the transport of neutrons and gamma rays in complex geometries, is outlined. The program includes the treatment of geometric regions bounded by quadratic and quadric surfaces with multiple radiation sources which have specified space, angle, and energy dependence. The program calculates, using importance sampling, the resulting number and energy fluxes at specified point, surface, and volume detectors. It can also calculate minimum weight shield configuration meeting a specified dose rate constraint. Results are presented for sample problems involving primary neutron, and primary and secondary photon, transport in a spherical reactor shield configuration.

  4. Monte Carlo estimation of uncertainties in BEIS3 emission outputs and their effects on uncertainties in chemical transport model predictions

    NASA Astrophysics Data System (ADS)

    Hanna, S. R.; Russell, A. G.; Wilkinson, J. G.; Vukovich, J.; Hansen, D. A.

    2005-01-01

    A Monte Carlo (MC) probabilistic approach is used to estimate uncertainties in the emissions outputs of the Biogenics Emission Inventory System Version 3 (BEIS3) model and subsequent ozone outputs of three Chemical Transport Models (CTMs) due to uncertainties in many key BEIS3 biogenics emissions model parameters and inputs. BEIS3 was developed by the Environmental Protection Agency to estimate emissions of biogenic substances such as isoprene, monoterpenes, oxygenated and other volatile organic compounds (OVOCs), and biogenic nitric oxide (BNO). Uncertainties are investigated for three time periods, 24-29 May, 11-15 July, and 4-9 September 1995, which are ozone episodes that have been extensively studied by others as part of emissions control planning exercises. In the MC approach, 1000 samples are drawn randomly and independently from seventeen BEIS3 parameters and inputs, whose distribution shapes and variances are determined from literature reviews. The 95% confidence range on the calculated uncertainties in isoprene and BNO emissions cover approximately an order of magnitude. On the other hand, the 95% confidence ranges on the calculated uncertainties in monoterpenes and OVOC emissions are much smaller: about ±20%. Correlations are calculated between the 1000 MC samples of pairs of variations in model parameters or inputs and variations in BEIS3 daily emissions estimates for individual grid squares. A few significant correlations are found for some of the assumed model parameters. The MC uncertainties in the CTM-predicted 1- and 8-hour averaged ozone concentrations were studied by drawing 20 random samples from the 1000 sets of BEIS3 outputs and running each CTM (MAQSIP, UAM-V, and URM) 20 times for the three episodes. The estimated total uncertainties of ±15 to 20% are found to be nearly the same for the three CTMs over the three time periods, for 1- and 8-hour averages.

  5. A Monte Carlo neutron transport code for eigenvalue calculations on a dual-GPU system and CUDA environment

    SciTech Connect

    Liu, T.; Ding, A.; Ji, W.; Xu, X. G.; Carothers, C. D.; Brown, F. B.

    2012-07-01

    Monte Carlo (MC) method is able to accurately calculate eigenvalues in reactor analysis. Its lengthy computation time can be reduced by general-purpose computing on Graphics Processing Units (GPU), one of the latest parallel computing techniques under development. The method of porting a regular transport code to GPU is usually very straightforward due to the 'embarrassingly parallel' nature of MC code. However, the situation becomes different for eigenvalue calculation in that it will be performed on a generation-by-generation basis and the thread coordination should be explicitly taken care of. This paper presents our effort to develop such a GPU-based MC code in Compute Unified Device Architecture (CUDA) environment. The code is able to perform eigenvalue calculation under simple geometries on a multi-GPU system. The specifics of algorithm design, including thread organization and memory management were described in detail. The original CPU version of the code was tested on an Intel Xeon X5660 2.8 GHz CPU, and the adapted GPU version was tested on NVIDIA Tesla M2090 GPUs. Double-precision floating point format was used throughout the calculation. The result showed that a speedup of 7.0 and 33.3 were obtained for a bare spherical core and a binary slab system respectively. The speedup factor was further increased by a factor of {approx}2 on a dual GPU system. The upper limit of device-level parallelism was analyzed, and a possible method to enhance the thread-level parallelism was proposed. (authors)

  6. A Kinetic Monte Carlo Study of Fullerene Adsorption within a Pc-PBBA Covalent Organic Framework and Implications for Electron Transport.

    PubMed

    Koo, Brian T; Berard, Philip G; Clancy, Paulette

    2015-03-10

    Two-dimensional covalent organic frameworks (COFs), with their predictable assembly into ordered porous crystalline materials, tunable composition, and high charge carrier mobility, offer the possibility of creating ordered bulk heterojunction solar cells given a suitable electron-transporting material to fill the pores. The photoconductive (hole-transporting) properties of many COFs have been reported, including the recent creation of a TT-COF/PCBM solar cell by Dogru et al. Although a prototype device has been fabricated, its poor solar efficiency suggests a potential issue with electron transport caused by the interior packing of the fullerenes. Such packing information is absent and cannot be obtained experimentally. In this paper, we use Kinetic Monte Carlo (KMC) simulations to understand the dominant pore-filling mechanisms and packing configurations of C60 molecules in a Pc-PBBA COF that are similar to the COF fabricated experimentally. The KMC simulations thus offer more realistic filling conditions than our previously used Monte Carlo (MC) techniques. We found persistently large separation distances between C60 molecules that are absent in the more tractable MC simulations and which are likely to hinder electron transport significantly. We attribute the looser fullerene packing to the existence of stable motifs with pairwise distances that are mismatched with the underlying adsorption lattice of the COF. We conclude that larger pore COFs may be necessary to optimize electron transport and hence produce higher efficiency devices.

  7. A fast GPU-based Monte Carlo simulation of proton transport with detailed modeling of nonelastic interactions.

    PubMed

    Wan Chan Tseung, H; Ma, J; Beltran, C

    2015-06-01

    Very fast Monte Carlo (MC) simulations of proton transport have been implemented recently on graphics processing units (GPUs). However, these MCs usually use simplified models for nonelastic proton-nucleus interactions. Our primary goal is to build a GPU-based proton transport MC with detailed modeling of elastic and nonelastic proton-nucleus collisions. Using the cuda framework, the authors implemented GPU kernels for the following tasks: (1) simulation of beam spots from our possible scanning nozzle configurations, (2) proton propagation through CT geometry, taking into account nuclear elastic scattering, multiple scattering, and energy loss straggling, (3) modeling of the intranuclear cascade stage of nonelastic interactions when they occur, (4) simulation of nuclear evaporation, and (5) statistical error estimates on the dose. To validate our MC, the authors performed (1) secondary particle yield calculations in proton collisions with therapeutically relevant nuclei, (2) dose calculations in homogeneous phantoms, (3) recalculations of complex head and neck treatment plans from a commercially available treatment planning system, and compared with (GEANT)4.9.6p2/TOPAS. Yields, energy, and angular distributions of secondaries from nonelastic collisions on various nuclei are in good agreement with the (GEANT)4.9.6p2 Bertini and Binary cascade models. The 3D-gamma pass rate at 2%-2 mm for treatment plan simulations is typically 98%. The net computational time on a NVIDIA GTX680 card, including all CPU-GPU data transfers, is ∼ 20 s for 1 × 10(7) proton histories. Our GPU-based MC is the first of its kind to include a detailed nuclear model to handle nonelastic interactions of protons with any nucleus. Dosimetric calculations are in very good agreement with (GEANT)4.9.6p2/TOPAS. Our MC is being integrated into a framework to perform fast routine clinical QA of pencil-beam based treatment plans, and is being used as the dose calculation engine in a clinically

  8. Status of the PXIE Low Energy Beam Transport Line

    SciTech Connect

    Prost, Lionel; Andrews, Richard; Chen, Alex; Hanna, Bruce; Scarpine, Victor; Shemyakin, Alexander; Steimel, Jim; D'Arcy, Richard

    2014-07-01

    A CW-compatible, pulsed H- superconducting RF linac (a.k.a. PIP-II) is envisaged as a possible path for upgrading Fermilab’s injection complex [1]. To validate the concept of the front-end of such machine, a test accelerator (a.k.a. PXIE) [2] is under construction. The warm part of this accelerator comprises a 10 mA DC, 30 keV H- ion source, a 2m-long LEBT, a 2.1 MeV CW RFQ, and a MEBT that feeds the first cryomodule. In addition to operating in the nominal CW mode, the LEBT should be able to produce a pulsed beam for both PXIE commissioning and modelling of the front-end nominal operation in the pulsed mode. Concurrently, it needs to provide effective means of inhibiting beam as part of the overall machine protection system. A peculiar feature of the present LEBT design is the capability of using the ~1m-long section immediately preceding the RFQ in two regimes of beam transport dynamics: neutralized and space charge dominated. This paper introduces the PXIE LEBT, reports on the status of the ion source and LEBT installation, and presents the first beam measurements.

  9. Zinc transporter mRNA expression in the RWPE-1 human prostate epithelial cell line.

    PubMed

    Albrecht, Amy L; Somji, Seema; Sens, Mary Ann; Sens, Donald A; Garrett, Scott H

    2008-08-01

    The human prostate gland undergoes a prominent alteration in Zn+2 homeostasis during the development of prostate cancer. The goal of the present study was to determine if the immortalized human prostate cell line (RWPE-1) could serve as a model system to study the role of zinc in prostate cancer. The study examined the expression of mRNA for 19 members of the zinc transporter gene family in normal prostate tissue, the prostate RWPE-1 cell line, and the LNCaP, DU-145 and PC-3 prostate cancer cell lines. The study demonstrated that the expression of the 19 zinc transporters was similar between the RWPE-1 cell line and the in situ prostate gland. Of the 19 zinc transporters, only 5 had levels that were different between the RWPE-1 cells and the tissue samples; all five being increased (ZnT-6, Zip-1, Zip-3A, Zip-10, and Zip-14). The response of the 19 transporters was also determined when the cell lines were exposed to 75 microM Zn+2 for 24 h. It was shown for the RWPE-1 cells that only 5 transporters responded to Zn+2 with mRNA for ZnT-1 and ZnT-2 being increased while mRNA for ZnT-7, Zip-7 and Zip-10 transporters were decreased. It was shown for the LNCaP, DU-145 and PC-3 cells that Zn+2 had no effect on the mRNA levels of all 19 transporters except for an induction of ZnT-1 in PC-3 cells. Overall, the study suggests that the RWPE-1 cells could be a valuable model for the study of the zinc transporter gene family in the prostate.

  10. Monte Carlo fundamentals

    SciTech Connect

    Brown, F.B.; Sutton, T.M.

    1996-02-01

    This report is composed of the lecture notes from the first half of a 32-hour graduate-level course on Monte Carlo methods offered at KAPL. These notes, prepared by two of the principle developers of KAPL`s RACER Monte Carlo code, cover the fundamental theory, concepts, and practices for Monte Carlo analysis. In particular, a thorough grounding in the basic fundamentals of Monte Carlo methods is presented, including random number generation, random sampling, the Monte Carlo approach to solving transport problems, computational geometry, collision physics, tallies, and eigenvalue calculations. Furthermore, modern computational algorithms for vector and parallel approaches to Monte Carlo calculations are covered in detail, including fundamental parallel and vector concepts, the event-based algorithm, master/slave schemes, parallel scaling laws, and portability issues.

  11. Monte-Carlo simulation studies of the effect of temperature and diameter variation on spin transport in II-VI semiconductor nanowires

    NASA Astrophysics Data System (ADS)

    Chishti, Sabiq; Ghosh, Bahniman; Bishnoi, Bhupesh

    2015-02-01

    We have analyzed the spin transport behaviour of four II-VI semiconductor nanowires by simulating spin polarized transport using a semi-classical Monte-Carlo approach. The different scattering mechanisms considered are acoustic phonon scattering, surface roughness scattering, polar optical phonon scattering, and spin flip scattering. The II-VI materials used in our study are CdS, CdSe, ZnO and ZnS. The spin transport behaviour is first studied by varying the temperature (4-500 K) at a fixed diameter of 10 nm and also by varying the diameter (8-12 nm) at a fixed temperature of 300 K. For II-VI compounds, the dominant mechanism is for spin relaxation; D'yakonovPerel and Elliot Yafet have been actively employed in the first order model to simulate the spin transport. The dependence of the spin relaxation length (SRL) on the diameter and temperature has been analyzed.

  12. Time-dependent integral equations of neutron transport for calculating the kinetics of nuclear reactors by the Monte Carlo method

    NASA Astrophysics Data System (ADS)

    Davidenko, V. D.; Zinchenko, A. S.; Harchenko, I. K.

    2016-12-01

    Integral equations for the shape functions in the adiabatic, quasi-static, and improved quasi-static approximations are presented. The approach to solving these equations by the Monte Carlo method is described.

  13. Time-dependent integral equations of neutron transport for calculating the kinetics of nuclear reactors by the Monte Carlo method

    SciTech Connect

    Davidenko, V. D. Zinchenko, A. S. Harchenko, I. K.

    2016-12-15

    Integral equations for the shape functions in the adiabatic, quasi-static, and improved quasi-static approximations are presented. The approach to solving these equations by the Monte Carlo method is described.

  14. 8 CFR 233.2 - Transportation lines bringing aliens to the United States from or through foreign contiguous...

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 8 Aliens and Nationality 1 2011-01-01 2011-01-01 false Transportation lines bringing aliens to the United States from or through foreign contiguous territory or adjacent islands. 233.2 Section 233.2 Aliens and Nationality DEPARTMENT OF HOMELAND SECURITY IMMIGRATION REGULATIONS CONTRACTS WITH TRANSPORTATION LINES § 233.2 Transportation...

  15. 8 CFR 233.2 - Transportation lines bringing aliens to the United States from or through foreign contiguous...

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 8 Aliens and Nationality 1 2012-01-01 2012-01-01 false Transportation lines bringing aliens to the United States from or through foreign contiguous territory or adjacent islands. 233.2 Section 233.2 Aliens and Nationality DEPARTMENT OF HOMELAND SECURITY IMMIGRATION REGULATIONS CONTRACTS WITH TRANSPORTATION LINES § 233.2 Transportation...

  16. 8 CFR 233.2 - Transportation lines bringing aliens to the United States from or through foreign contiguous...

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 8 Aliens and Nationality 1 2013-01-01 2013-01-01 false Transportation lines bringing aliens to the United States from or through foreign contiguous territory or adjacent islands. 233.2 Section 233.2 Aliens and Nationality DEPARTMENT OF HOMELAND SECURITY IMMIGRATION REGULATIONS CONTRACTS WITH TRANSPORTATION LINES § 233.2 Transportation...

  17. New aspects of absorption line formation in intervening turbulent clouds - II. Monte Carlo simulation of interstellar H+D Lyalpha absorption profiles

    NASA Astrophysics Data System (ADS)

    Levshakov, Sergei A.; Kegel, Wilhelm H.; Mazets, Igor E.

    1997-07-01

    Stochastic velocity fields with finite correlation lengths affect the formation of interstellar (intergalactic) absorption lines in a way not accounted for in the standard analysis procedure in which Voigt profiles are fitted to the observed line profiles. We investigate these effects, accounting in particular for the fact that interstellar absorption spectra reflect only one realization of the velocity field, since (i) actually only one line of sight is observed and (ii) the velocity structure of the cloud has to be considered to be `frozen' over the exposure time. This paper presents results of Monte Carlo calculations. In this technique an ensemble of line profiles is computed, each one of which corresponds to one realization of the random velocity field. The most important results are the following. (1) The individual line profiles may deviate substantially from each other and from the ensemble average. (2) Correlated velocity fields may cause complex multicomponent absorption features which in a traditional analysis would be attributed to several clouds, i.e. to density and/or kinetic temperature inhomogeneities. (3) Each line of sight has its own curve-of-growth. (4) Applying the standard analysis to such line profiles may produce misleading results concerning the physical parameters of the cloud. (5) In particular, the apparent scatter of the D/H ratio revealed in the ISM on the basis of the Copernicus, IUE, and HST observations may be caused by an inadequate analysis. Finally, we discuss under which conditions cloud characteristics may be derived from absorption lines without relying on a particular physical model.

  18. Operation of the intensity monitors in beam transport lines at Fermilab during Run II¹

    DOE PAGES

    Crisp, J.; Fellenz, B.; Fitzgerald, J.; ...

    2011-10-06

    The intensity of charged particle beams at Fermilab must be kept within pre-determined safety and operational envelopes in part by assuring all beam within a few percent has been transported from any source to destination. Beam instensity monitors with toroidial pickups provide such beam intensity measurements in the transport lines between accelerators at FNAL. With Run II, much effort was made to continually improve the resolution and accuracy of the system.

  19. THE BOOSTER APPLICATION FACILITY (BAF) BEAM TRANSPORT LINE OF BNL-AGS BOOSTER.

    SciTech Connect

    TSOUPAS,N.; BROWN,K.A.; CULLEN,J.R.; LEE,Y.Y.; MCNERNEY,A.J.; PILE,P.H.; ROSER,T.; SOUKAS,A.; TUOZZOLO,J.E.

    1999-03-29

    An experimental facility, to irradiate materials with energetic ion beams, has been proposed to be built at the Brookhaven National Laboratory. The BAF facility will mainly consist of the AGS-Booster slow extraction, of a beam transport line, and a target room. The beam transport line will transport the slow extracted beam of the AGS-Booster to the target location for the irradiation of various materials and specimens. A variety of ion beams like (p, {sup 28}Si, {sup 56}Fe, {sup 63}Cu, {sup 197}Au) in the energy range of 0.04 to 3.07 GeV/nucleon will be transported by the BAF line which is designed to provide variable beam spot sizes on the BAF target with sizes varying from 2.0 cm to 20.0 cm in diameter. The beam spot sizes will include 95% of the beam intensity with the beam distributed normally (Gaussian) on the target area. It is also possible by introducing magnetic octupoles at specified locations along the beam transport line, to modify the distribution on the BAF target and provide well confined beams with rectangular cross section and with uniform distribution on the target.

  20. Numerical Modelling of Intense Electron Beam Transport in the Spiral Line Induction Accelerator

    DTIC Science & Technology

    1992-08-28

    arising in the context of the spiral line induction accelerator (SLIA), a device in which the beam is transported along an open-ended beam pipe ...field. Because the field coils are wound directly onto the spiral beam pipe , and because each bend is magnetically shielded from its neighbors, each... Spiral Line Induction Accelerator J. KRALL, S. SLINKER, M. LAMPE AND G. JOYCE Beam Physics Branch Plasma Physics Division August 28, 1992 _pw DTIC U)lz E

  1. Color path-integral Monte-Carlo simulations of quark-gluon plasma: Thermodynamic and transport properties

    NASA Astrophysics Data System (ADS)

    Filinov, V. S.; Ivanov, Yu. B.; Fortov, V. E.; Bonitz, M.; Levashov, P. R.

    2013-03-01

    Based on the quasiparticle model of the quark-gluon plasma (QGP), a color quantum path-integral Monte-Carlo (PIMC) method for the calculation of thermodynamic properties and—closely related to the latter—a Wigner dynamics method for calculation of transport properties of the QGP are formulated. The QGP partition function is presented in the form of a color path integral with a new relativistic measure instead of the Gaussian one traditionally used in the Feynman-Wiener path integral. A procedure of sampling color variables according to the SU(3) group Haar measure is developed for integration over the color variable. It is shown that the PIMC method is able to reproduce the lattice QCD equation of state at zero baryon chemical potential at realistic model parameters (i.e., quasiparticle masses and coupling constant) and also yields valuable insight into the internal structure of the QGP. Our results indicate that the QGP reveals quantum liquidlike(rather than gaslike) properties up to the highest considered temperature of 525 MeV. The pair distribution functions clearly reflect the existence of gluon-gluon bound states, i.e., glueballs, at temperatures just above the phase transition, while mesonlike qq¯ bound states are not found. The calculated self-diffusion coefficient agrees well with some estimates of the heavy-quark diffusion constant available from recent lattice data and also with an analysis of heavy-quark quenching in experiments on ultrarelativistic heavy-ion collisions, however, appreciably exceeds other estimates. The lattice and heavy-quark-quenching results on the heavy-quark diffusion are still rather diverse. The obtained results for the shear viscosity are in the range of those deduced from an analysis of the experimental elliptic flow in ultrarelativistic heavy-ions collisions, i.e., in terms the viscosity-to-entropy ratio, 1/4π≲η/S<2.5/4π, in the temperature range from 170 to 440 MeV.

  2. Radiation transport analyses in support of the SNS Target Station Neutron Beam Line Shutters Title I Design

    SciTech Connect

    Miller, T.M.; Pevey, R.E.; Lillie, R.A.; Johnson, J.O.

    2000-12-01

    A detailed radiation transport analysis of the Spallation Neutron Source (SNS) shutters is important for the construction of the SNS because of its impact on conventional facility design, normal operation of the facility, and maintenance operations. Thus far the analysis of the SNS shutter travel gaps has been completed. This analysis was performed using coupled Monte Carlo and multi-dimensional discrete ordinates calculations.

  3. Choline transport via choline transporter-like protein 1 in conditionally immortalized rat syncytiotrophoblast cell lines TR-TBT.

    PubMed

    Lee, N-Y; Choi, H-M; Kang, Y-S

    2009-04-01

    Choline is an essential nutrient for phospholipids and acetylcholine biosynthesis in normal development of fetus. In the present study, we investigated the functional characteristics of choline transport system and inhibitory effect of cationic drugs on choline transport in rat conditionally immortalized syncytiotrophoblast cell line (TR-TBT). Choline transport was weakly Na(+) dependent and significantly influenced by extracellular pH and by membrane depolarization. The transport process of choline is saturable with Michaelis-Menten constants (K(m)) of 68microM and 130microM in TR-TBT 18d-1 and TR-TBT 18d-2 respectively. Choline uptake in the cells was inhibited by unlabeled choline and hemicholinium-3 as well as various organic cations including guanidine, amiloride and acetylcholine. However, the prototypical organic cation tetraethylammonium and cimetidine showed very little inhibitory effect of choline uptake in TR-TBT cells. RT-PCR revealed that choline transporter-like protein 1 (CTL1) and organic cation transporter 2 (OCT2) are expressed in TR-TBT cells. The transport properties of choline in TR-TBT cells were similar or identical to that of CTL1 but not OCT2. CTL1 was also detected in human placenta. In addition, several cationic drugs such as diphenhydramine and verapamil competitively inhibited choline uptake in TR-TBT 18d-1 with K(i) of 115microM and 55microM, respectively. Our results suggest that choline transport system, which has intermediate affinity and weakly Na(+) dependent, in TR-TBT seems to occur through a CTL1 and this system may have relevance with the uptake of pharmacologically important organic cation drugs.

  4. THE ONSITE ON-LINE CALCULATORS AND TRAINING FOR SUBSURFACE CONTAMINANT TRANSPORT SITE ASSESSMENT

    EPA Science Inventory

    EPA has developed a suite of on-line calculators called "OnSite" for assessing transport of environmental contaminants in the subsurface. The purpose of these calculators is to provide methods and data for common calculations used in assessing impacts from subsurface contaminatio...

  5. 8 CFR 241.24 - Notice to transportation line of alien's exclusion.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 8 Aliens and Nationality 1 2011-01-01 2011-01-01 false Notice to transportation line of alien's exclusion. 241.24 Section 241.24 Aliens and Nationality DEPARTMENT OF HOMELAND SECURITY IMMIGRATION REGULATIONS APPREHENSION AND DETENTION OF ALIENS ORDERED REMOVED Deportation of Excluded Aliens (for Hearings Commenced Prior to April 1, 1997) §...

  6. 8 CFR 241.24 - Notice to transportation line of alien's exclusion.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 8 Aliens and Nationality 1 2013-01-01 2013-01-01 false Notice to transportation line of alien's exclusion. 241.24 Section 241.24 Aliens and Nationality DEPARTMENT OF HOMELAND SECURITY IMMIGRATION REGULATIONS APPREHENSION AND DETENTION OF ALIENS ORDERED REMOVED Deportation of Excluded Aliens (for Hearings Commenced Prior to April 1, 1997) §...

  7. 8 CFR 241.9 - Notice to transportation line of alien's removal.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 8 Aliens and Nationality 1 2010-01-01 2010-01-01 false Notice to transportation line of alien's removal. 241.9 Section 241.9 Aliens and Nationality DEPARTMENT OF HOMELAND SECURITY IMMIGRATION REGULATIONS APPREHENSION AND DETENTION OF ALIENS ORDERED REMOVED Post-hearing Detention and Removal § 241.9...

  8. 8 CFR 241.24 - Notice to transportation line of alien's exclusion.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 8 Aliens and Nationality 1 2010-01-01 2010-01-01 false Notice to transportation line of alien's exclusion. 241.24 Section 241.24 Aliens and Nationality DEPARTMENT OF HOMELAND SECURITY IMMIGRATION REGULATIONS APPREHENSION AND DETENTION OF ALIENS ORDERED REMOVED Deportation of Excluded Aliens (for Hearings...

  9. RISK ASSESSMENT ANALYSES USING EPA'S ON-LINE SITE-SPECIFIC TRANSPORT MODELS AND FIELD DATA

    EPA Science Inventory

    EPA has developed a suite of on-line calculators and transport models to aid in risk assessment for subsurface contamination. The calculators (www.epa.gov/athens/onsite) provide several levels of tools and data. These include tools for generating commonly-used model input param...

  10. 76 FR 52731 - On-Line Complaint Form for Service-Related Issues in Air Transportation

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-08-23

    ... Office of the Secretary On-Line Complaint Form for Service-Related Issues in Air Transportation AGENCY... public to electronically submit aviation service-related complaints against air carriers. DATES: Comments... U.S.C., Subtitle VII, to investigate and enforce consumer protection and civil rights laws...

  11. Design and initial tests of beam current monitoring systems for the APS transport lines

    SciTech Connect

    Wang, Xucheng

    1992-12-01

    The non-intercepting beam current monitoring systems suitable for a wide, range of beam parameters have been developed for the Advanced Photon Source (APS) low energy transport lines and high energy transport line. The positron or electron beam pulse in the transport lines wig have peak beam currents ranging from 8 mA to 29 A with pulse widths varying from 120 ps to 30 ns and pulse repetition rates from 2 Hz to 60 Hz. The peak beam current or total beam charge is measured with the fast or integrating current transformer, respectively, manufactured by Bergoz. In-house high speed beam signal processing electronics provide a DC level output proportional to the peak current or total charge for the digitizer input. The prototype systems were tested on the linacs which have beam pulse structures similar to that of the APS transport lines. This paper describes the design of beam signal processing electronics and grounding and shielding methods for current transformers. The results of the initial operations are presented. A short introduction on the preliminary design of current monitoring systems for the APS rings is also included.

  12. Design and initial tests of beam current monitoring systems for the APS transport lines

    SciTech Connect

    Wang, Xucheng.

    1992-01-01

    The non-intercepting beam current monitoring systems suitable for a wide, range of beam parameters have been developed for the Advanced Photon Source (APS) low energy transport lines and high energy transport line. The positron or electron beam pulse in the transport lines wig have peak beam currents ranging from 8 mA to 29 A with pulse widths varying from 120 ps to 30 ns and pulse repetition rates from 2 Hz to 60 Hz. The peak beam current or total beam charge is measured with the fast or integrating current transformer, respectively, manufactured by Bergoz. In-house high speed beam signal processing electronics provide a DC level output proportional to the peak current or total charge for the digitizer input. The prototype systems were tested on the linacs which have beam pulse structures similar to that of the APS transport lines. This paper describes the design of beam signal processing electronics and grounding and shielding methods for current transformers. The results of the initial operations are presented. A short introduction on the preliminary design of current monitoring systems for the APS rings is also included.

  13. THE ONSITE ON-LINE CALCULATORS AND TRAINING FOR SUBSURFACE CONTAMINANT TRANSPORT SITE ASSESSMENT

    EPA Science Inventory

    EPA has developed a suite of on-line calculators called "OnSite" for assessing transport of environmental contaminants in the subsurface. The purpose of these calculators is to provide methods and data for common calculations used in assessing impacts from subsurface contaminatio...

  14. RISK ASSESSMENT ANALYSES USING EPA'S ON-LINE SITE-SPECIFIC TRANSPORT MODELS AND FIELD DATA

    EPA Science Inventory

    EPA has developed a suite of on-line calculators and transport models to aid in risk assessment for subsurface contamination. The calculators (www.epa.gov/athens/onsite) provide several levels of tools and data. These include tools for generating commonly-used model input param...

  15. Effects of Escherichia coli challenge and transport stress on hematology and serum chemistry values of three genetic lines of turkeys.

    PubMed

    Huff, G R; Huff, W E; Rath, N C; Anthony, N B; Nestor, K E

    2008-11-01

    Three lines of turkeys were compared for response to an Escherichia coli challenge followed by transport stress (transport). The turkey lines were a slow-growing line selected for increased egg production (egg line), a fast-growing line selected for increased 16-wk BW (F line), and a commercial line (Comm line). Birds were challenged at 14 wk of age with an air sac injection of 5,000 to 10,000 cfu of E. coli. At 8 d postchallenge, birds were subjected to a transport stress procedure that included 12 h of holding time in a transport vehicle. The following morning all birds (n = 10 to 19 birds/line) were bled. Whole blood was analyzed using the Cell-Dyn 3500 blood analysis system (Abbott Diagnostics), and serum chemistry was measured using the Express Plus analyzer (Ciba-Corning Diagnostics Corp.). Transport significantly decreased the levels of hematocrit, hemoglobin, mean cell volume, mean corpuscular hemoglobin, glucose, triglycerides, cholesterol, phosphorus, iron, albumin, and alkaline phosphatase (AP) and increased the levels of uric acid, blood urea nitrogen, alanine aminotransferase, aspartate aminotransferase, and creatine kinase. Line differences were variable, but the levels of both iron and AP were least in the fastest-growing Comm line birds and greatest in the slowest-growing egg-line birds with intermediate values in the F line. Iron and AP were also the only parameters influenced by sex, with males having greater levels of both compared with females. The creatine kinase levels were more than 6-fold greater in transported Comm line birds, and iron levels of transported Comm males were 3-fold less than controls. Previously, the growth rate of these lines was positively correlated with increased heterophil to lymphocyte ratios and susceptibility to colibacillosis. The differences seen in the Comm line for these commonly measured blood parameters suggest that they may be useful for profiling flocks to determine their response to transport stress and feed

  16. Focused transport of energetic particles along magnetic field lines draped around a coronal mass ejection

    NASA Technical Reports Server (NTRS)

    Tan, L. C.; Mason, G. M.; Lee, M. A.; Klecker, B.; Ipavich, F. M.

    1992-01-01

    Evidence is presented for focused transport of energetic particles along magnetic field lines draped around a coronal mass ejection. This evidence was obtained with the University of Maryland/Max-Planck-Institute experiment on the ISEE-3 spacecraft during the decay phase of the June 6, 1979, solar particle event. During the early portion of the decay phase of this event, interplanetary magnetic field lines were apparently draped around a coronal mass ejection, leading to a small focusing length on the western flank where ISEE 3 was located. A period of very slow decrease of particle intensity was observed, along with large sunward anisotropy in the solar wind frame, which is inconsistent with predictions of the standard Fokker-Planck equation models for diffusive transport. It was found possible to fit the observations, assuming that focused transport dominates and that the particle pitch angle scattering is isotropic.

  17. Transport and dosimetric solutions for the ELIMED laser-driven beam line

    NASA Astrophysics Data System (ADS)

    Cirrone, G. A. P.; Romano, F.; Scuderi, V.; Amato, A.; Candiano, G.; Cuttone, G.; Giove, D.; Korn, G.; Krasa, J.; Leanza, R.; Manna, R.; Maggiore, M.; Marchese, V.; Margarone, D.; Milluzzo, G.; Petringa, G.; Sabini, M. G.; Schillaci, F.; Tramontana, A.; Valastro, L.; Velyhan, A.

    2015-10-01

    Within 2017, the ELIMED (ELI-Beamlines MEDical applications) transport beam-line and dosimetric systems for laser-generated beams will be installed at the ELI-Beamlines facility in Prague (CZ), inside the ELIMAIA (ELI Multidisciplinary Applications of laser-Ion Acceleration) interaction room. The beam-line will be composed of two sections: one in vacuum, devoted to the collecting, focusing and energy selection of the primary beam and the second in air, where the ELIMED beam-line dosimetric devices will be located. This paper briefly describes the transport solutions that will be adopted together with the main dosimetric approaches. In particular, the description of an innovative Faraday Cup detector with its preliminary experimental tests will be reported.

  18. Establishment of optimized MDCK cell lines for reliable efflux transport studies.

    PubMed

    Gartzke, Dominik; Fricker, Gert

    2014-04-01

    Madin-Darby canine kidney (MDCK) cells transfected with human MDR1 gene (MDCK-MDR1) encoding for P-glycoprotein (hPgp, ABCB1) are widely used for transport studies to identify drug candidates as substrates of this efflux protein. Therefore, it is necessary to rely on constant and comparable expression levels of Pgp to avoid false negative or positive results. We generated a cell line with homogenously high and stable expression of hPgp through sorting single clones from a MDCK-MDR1 cell pool using fluorescence-activated cell sorting (FACS). To obtain control cell lines for evaluation of cross-interactions with endogenous canine Pgp (cPgp) wild-type cells were sorted with a low expression pattern of cPgp in comparison with the MDCK-MDR1. Expression of other transporters was also characterized in both cell lines by quantitative real-time PCR and Western blot. Pgp function was investigated applying the Calcein-AM assay as well as bidirectional transport assays using (3) H-Digoxin, (3) H-Vinblastine, and (3) H-Quinidine as substrates. Generated MDCK-MDR1 cell lines showed high expression of hPgp. Control MDCK-WT cells were optimized in showing a comparable expression level of cPgp in comparison with MDCK-MDR1 cell lines. Generated cell lines showed higher and more selective Pgp transport compared with parental cells. Therefore, they provide a significant improvement in the performance of efflux studies yielding more reliable results.

  19. Line edge roughness after development in a positive-tone chemically amplified resist of post-optical lithography investigated by Monte Carlo simulation and a dissolution model

    NASA Astrophysics Data System (ADS)

    Saeki, Akinori; Kozawa, Takahiro; Tagawa, Seiichi; Cao, Heidi B.; Deng, Hai; Leeson, Michael J.

    2008-01-01

    Line edge roughness (LER) of patterned features in chemically amplified (CA) resists is formed in the acid generation stage and expected to be moderated by the acid diffusion and development process. It is essential to obtain information on the limit of LER in order to realize next-generation lithographies such as electron beam or extreme ultraviolet. Here, we report for the first time a process simulator based on physical and chemical reaction mechanisms. The LER of a positive-tone CA resist after development is investigated by Monte Carlo simulation and Mack's dissolution model. We found that the LER (high frequency) of less than 1.2 nm is achievable, although the process conditions and material design for achieving such a small LER are strict.

  20. Continuous Nano-Particle Transport in a Standing Wave Optical Line Trap

    NASA Astrophysics Data System (ADS)

    Demergis, Vassili; Florin, Ernst-Ludwig

    2011-03-01

    Since the introduction of the single beam optical trap (SBT) by Ashkin et. al. in 1986, trapping and manipulation of micron-sized particles by optical forces has become instrumental in many areas of research. However, controlled transport of large numbers of particles is difficult using a SBT. Here we introduce a technique for controlled transport that we call an Optical Capillary (OC), named for its ability to strongly confine and continuously transport nanometer-sized particles. The OC, generated by an optical standing wave pattern, is especially strong along the optical axis due to the compensation of the axial scattering force. We utilize the lateral scattering forces to control the transport of particles along a line perpendicular to the optical axis. The measured velocity profiles of single particles in the OC agree with our model predictions.

  1. Linings with optimum heat-emission surfaces for cars receiving and transporting incandescent coke

    SciTech Connect

    Kotlyar, B.D.; Pleshkov, P.I.; Gadyatskii, V.G.

    1992-12-31

    The least reliable components of the cars which receive and transport incandescent coke are the lining plates. This applies to both the quenching cars used for wet quenching and the hot-coke cars used in the dry cooling process. Technical advances have been described whereby the life of car linings is prolonged by increasing heat emission from the lining plate surfaces. As the heat emission level is enhanced the mean plate temperature is lowered and the lining life thereby prolonged; moreover, the between-servicings period is prolonged. This involves providing fins on the non-working (outer) plate surfaces. The problem of optimizing the size and shape of the fins with reference to heat emission remains unsolved: the requirement is maximum heat emission from plates of a given weight, or conversely minimum plate weight for a given heat emission level. 6 refs., 3 figs.

  2. Modified Monte Carlo method for study of electron transport in degenerate electron gas in the presence of electron-electron interactions, application to graphene

    NASA Astrophysics Data System (ADS)

    Borowik, Piotr; Thobel, Jean-Luc; Adamowicz, Leszek

    2017-07-01

    Standard computational methods used to take account of the Pauli Exclusion Principle into Monte Carlo (MC) simulations of electron transport in semiconductors may give unphysical results in low field regime, where obtained electron distribution function takes values exceeding unity. Modified algorithms were already proposed and allow to correctly account for electron scattering on phonons or impurities. Present paper extends this approach and proposes improved simulation scheme allowing including Pauli exclusion principle for electron-electron (e-e) scattering into MC simulations. Simulations with significantly reduced computational cost recreate correct values of the electron distribution function. Proposed algorithm is applied to study transport properties of degenerate electrons in graphene with e-e interactions. This required adapting the treatment of e-e scattering in the case of linear band dispersion relation. Hence, this part of the simulation algorithm is described in details.

  3. 76 FR 37191 - Texas Department of Transportation-Acquisition Exemption-Line of Union Pacific Railroad Company

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-06-24

    ... supplemental verified notice of exemption \\1\\ under 49 CFR 1150.41 to acquire from Union Pacific Railroad Company (UP) 1.28 miles of rail line on UP's Bonham Subdivision between mileposts 127.5 and 128.78, in... Surface Transportation Board Texas Department of Transportation--Acquisition Exemption--Line of Union...

  4. Accurate and efficient radiation transport in optically thick media -- by means of the Symbolic Implicit Monte Carlo method in the difference formulation

    SciTech Connect

    Szoke, A; Brooks, E D; McKinley, M; Daffin, F

    2005-03-30

    The equations of radiation transport for thermal photons are notoriously difficult to solve in thick media without resorting to asymptotic approximations such as the diffusion limit. One source of this difficulty is that in thick, absorbing media thermal emission is almost completely balanced by strong absorption. In a previous publication [SB03], the photon transport equation was written in terms of the deviation of the specific intensity from the local equilibrium field. We called the new form of the equations the difference formulation. The difference formulation is rigorously equivalent to the original transport equation. It is particularly advantageous in thick media, where the radiation field approaches local equilibrium and the deviations from the Planck distribution are small. The difference formulation for photon transport also clarifies the diffusion limit. In this paper, the transport equation is solved by the Symbolic Implicit Monte Carlo (SIMC) method and a comparison is made between the standard formulation and the difference formulation. The SIMC method is easily adapted to the derivative source terms of the difference formulation, and a remarkable reduction in noise is obtained when the difference formulation is applied to problems involving thick media.

  5. Monte Carlo tests of small-world architecture for coarse-grained networks of the United States railroad and highway transportation systems

    NASA Astrophysics Data System (ADS)

    Aldrich, Preston R.; El-Zabet, Jermeen; Hassan, Seerat; Briguglio, Joseph; Aliaj, Enela; Radcliffe, Maria; Mirza, Taha; Comar, Timothy; Nadolski, Jeremy; Huebner, Cynthia D.

    2015-11-01

    Several studies have shown that human transportation networks exhibit small-world structure, meaning they have high local clustering and are easily traversed. However, some have concluded this without statistical evaluations, and others have compared observed structure to globally random rather than planar models. Here, we use Monte Carlo randomizations to test US transportation infrastructure data for small-worldness. Coarse-grained network models were generated from GIS data wherein nodes represent the 3105 contiguous US counties and weighted edges represent the number of highway or railroad links between counties; thus, we focus on linkage topologies and not geodesic distances. We compared railroad and highway transportation networks with a simple planar network based on county edge-sharing, and with networks that were globally randomized and those that were randomized while preserving their planarity. We conclude that terrestrial transportation networks have small-world architecture, as it is classically defined relative to global randomizations. However, this topological structure is sufficiently explained by the planarity of the graphs, and in fact the topological patterns established by the transportation links actually serve to reduce the amount of small-world structure.

  6. Tuning spin polarization and spin transport of zigzag graphene nanoribbons by line defects.

    PubMed

    Tang, G P; Zhang, Z H; Deng, X Q; Fan, Z Q; Zhu, H L

    2015-01-07

    From first-principles methods, the spin-dependent electronic properties of zigzag-edged graphene nanoribbons (ZGNRs) with a line defect (558-defect) are investigated systematically and compared to those of the pristine ZGNR. Results show that the line defect possesses an obvious tuning effect on the spin-polarization of the edge carbon atoms of the defective ZGNRs, and the spin-polarization and spin-transport are sensitive to the position of line defects. The defective ZGNRs can realize a transition from antiferromagnetism (AFM) to ferrimagnetism and ferromagnetism (FM) via changing the position of line defects from the center to the zigzag edge of ZGNRs. More importantly, when the line defect is located at the one edge, the defective ZGNRs exhibit the long-range magnetic ordering at edges with a high Curie temperature up to 276 K, and the defective ZGNR system can generate a high-performance spin-filter effect in the large bias range, 0.0-0.5 V. Such a sensitive modulation for the spin-polarization and spin-transport holds great promise for applications of the graphene-based systems in nano-scale spintronic devices.

  7. Extracting potential bus lines of Customized City Bus Service based on public transport big data

    NASA Astrophysics Data System (ADS)

    Ren, Yibin; Chen, Ge; Han, Yong; Zheng, Huangcheng

    2016-11-01

    Customized City Bus Service (CCBS) can reduce the traffic congestion and environmental pollution that caused by the increasing in private cars, effectively. This study aims to extract the potential bus lines and each line's passenger density of CCBS by mining the public transport big data. The datasets used in this study are mainly Smart Card Data (SCD) and bus GPS data of Qingdao, China, from October 11th and November 7th 2015. Firstly, we compute the temporal-origin-destination (TOD) of passengers by mining SCD and bus GPS data. Compared with the traditional OD, TOD not only has the spatial location, but also contains the trip's boarding time. Secondly, based on the traditional DBSCAN algorithm, we put forwards an algorithm, named TOD-DBSCAN, combined with the spatial-temporal features of TOD.TOD-DBSCAN is used to cluster the TOD trajectories in peak hours of all working days. Then, we define two variables P and N to describe the possibility and passenger destiny of a potential CCBS line. P is the probability of the CCBS line. And N represents the potential passenger destiny of the line. Lastly, we visualize the potential CCBS lines extracted by our procedure on the map and analyse relationship between potential CCBS lines and the urban spatial structure.

  8. Spatiotemporal Monte Carlo transport methods in x-ray semiconductor detectors: Application to pulse-height spectroscopy in a-Se

    SciTech Connect

    Fang Yuan; Badal, Andreu; Allec, Nicholas; Karim, Karim S.; Badano, Aldo

    2012-01-15

    Purpose: The authors describe a detailed Monte Carlo (MC) method for the coupled transport of ionizing particles and charge carriers in amorphous selenium (a-Se) semiconductor x-ray detectors, and model the effect of statistical variations on the detected signal. Methods: A detailed transport code was developed for modeling the signal formation process in semiconductor x-ray detectors. The charge transport routines include three-dimensional spatial and temporal models of electron-hole pair transport taking into account recombination and trapping. Many electron-hole pairs are created simultaneously in bursts from energy deposition events. Carrier transport processes include drift due to external field and Coulombic interactions, and diffusion due to Brownian motion. Results: Pulse-height spectra (PHS) have been simulated with different transport conditions for a range of monoenergetic incident x-ray energies and mammography radiation beam qualities. Two methods for calculating Swank factors from simulated PHS are shown, one using the entire PHS distribution, and the other using the photopeak. The latter ignores contributions from Compton scattering and K-fluorescence. Comparisons differ by approximately 2% between experimental measurements and simulations. Conclusions: The a-Se x-ray detector PHS responses simulated in this work include three-dimensional spatial and temporal transport of electron-hole pairs. These PHS were used to calculate the Swank factor and compare it with experimental measurements. The Swank factor was shown to be a function of x-ray energy and applied electric field. Trapping and recombination models are all shown to affect the Swank factor.

  9. The Density Matrix of H20 - N2 In the Coordinate Representation: A Monte Carlo Calculation of the Far-Wing Line Shape

    NASA Technical Reports Server (NTRS)

    Ma, Q.; Tipping, R. H.

    1999-01-01

    The far-wing line shape theory within the binary collision and quasistatic framework has been developed using the coordinate representation. Within this formalism, the main computational task is the evaluation of multidimensional integrals whose variables are the orientational angles needed to specify the initial and final positions of the system during transition processes. Using standard methods, one is able to evaluate the 7-dimensional integrations required for linear molecular systems, or the 7-dimensional integrations for more complicated asymmetric-top (or symmetric-top) molecular systems whose interaction potential contains cyclic coordinates. In order to obviate this latter restriction on the form of the interaction potential, a Monte Carlo method is used to evaluate the 9-dimensional integrations required for systems consisting of one asymmetric-top (or symmetric-top) and one linear molecule, such as H20-N2. Combined with techniques developed previously to deal with sophisticated potential models, one is able to implement realistic potentials for these systems and derive accurate, converged results for the far-wing line shapes and the corresponding absorption coefficients. Conversely, comparison of the far-wing absorption with experimental data can serve as a sensitive diagnostic tool in order to obtain detailed information on the short-range anisotropic dependence of interaction potentials.

  10. Effect of burst and recombination models for Monte Carlo transport of interacting carriers in a-Se x-ray detectors on Swank noise

    SciTech Connect

    Fang, Yuan; Karim, Karim S.; Badano, Aldo

    2014-01-15

    Purpose: The authors describe the modification to a previously developed Monte Carlo model of semiconductor direct x-ray detector required for studying the effect of burst and recombination algorithms on detector performance. This work provides insight into the effect of different charge generation models for a-Se detectors on Swank noise and recombination fraction. Methods: The proposed burst and recombination models are implemented in the Monte Carlo simulation package, ARTEMIS, developed byFang et al. [“Spatiotemporal Monte Carlo transport methods in x-ray semiconductor detectors: Application to pulse-height spectroscopy in a-Se,” Med. Phys. 39(1), 308–319 (2012)]. The burst model generates a cloud of electron-hole pairs based on electron velocity, energy deposition, and material parameters distributed within a spherical uniform volume (SUV) or on a spherical surface area (SSA). A simple first-hit (FH) and a more detailed but computationally expensive nearest-neighbor (NN) recombination algorithms are also described and compared. Results: Simulated recombination fractions for a single electron-hole pair show good agreement with Onsager model for a wide range of electric field, thermalization distance, and temperature. The recombination fraction and Swank noise exhibit a dependence on the burst model for generation of many electron-hole pairs from a single x ray. The Swank noise decreased for the SSA compared to the SUV model at 4 V/μm, while the recombination fraction decreased for SSA compared to the SUV model at 30 V/μm. The NN and FH recombination results were comparable. Conclusions: Results obtained with the ARTEMIS Monte Carlo transport model incorporating drift and diffusion are validated with the Onsager model for a single electron-hole pair as a function of electric field, thermalization distance, and temperature. For x-ray interactions, the authors demonstrate that the choice of burst model can affect the simulation results for the generation

  11. Effect of burst and recombination models for Monte Carlo transport of interacting carriers in a-Se x-ray detectors on Swank noise

    SciTech Connect

    Fang, Yuan; Karim, Karim S.; Badano, Aldo

    2014-01-15

    Purpose: The authors describe the modification to a previously developed Monte Carlo model of semiconductor direct x-ray detector required for studying the effect of burst and recombination algorithms on detector performance. This work provides insight into the effect of different charge generation models for a-Se detectors on Swank noise and recombination fraction. Methods: The proposed burst and recombination models are implemented in the Monte Carlo simulation package, ARTEMIS, developed byFang et al. [“Spatiotemporal Monte Carlo transport methods in x-ray semiconductor detectors: Application to pulse-height spectroscopy in a-Se,” Med. Phys. 39(1), 308–319 (2012)]. The burst model generates a cloud of electron-hole pairs based on electron velocity, energy deposition, and material parameters distributed within a spherical uniform volume (SUV) or on a spherical surface area (SSA). A simple first-hit (FH) and a more detailed but computationally expensive nearest-neighbor (NN) recombination algorithms are also described and compared. Results: Simulated recombination fractions for a single electron-hole pair show good agreement with Onsager model for a wide range of electric field, thermalization distance, and temperature. The recombination fraction and Swank noise exhibit a dependence on the burst model for generation of many electron-hole pairs from a single x ray. The Swank noise decreased for the SSA compared to the SUV model at 4 V/μm, while the recombination fraction decreased for SSA compared to the SUV model at 30 V/μm. The NN and FH recombination results were comparable. Conclusions: Results obtained with the ARTEMIS Monte Carlo transport model incorporating drift and diffusion are validated with the Onsager model for a single electron-hole pair as a function of electric field, thermalization distance, and temperature. For x-ray interactions, the authors demonstrate that the choice of burst model can affect the simulation results for the generation

  12. Multiple pathways for cationic amino acid transport in rat thyroid epithelial cell line PC Cl3.

    PubMed

    Verri, Tiziano; Dimitri, Cinzia; Treglia, Sonia; Storelli, Fabio; De Micheli, Stefania; Ulianich, Luca; Vito, Pasquale; Marsigliante, Santo; Storelli, Carlo; Di Jeso, Bruno

    2005-02-01

    Information regarding cationic amino acid transport systems in thyroid is limited to Northern blot detection of y(+)LAT1 mRNA in the mouse. This study investigated cationic amino acid transport in PC cell line clone 3 (PC Cl3 cells), a thyroid follicular cell line derived from a normal Fisher rat retaining many features of normal differentiated follicular thyroid cells. We provide evidence that in PC Cl3 cells plasmalemmal transport of cationic amino acids is Na+ independent and occurs, besides diffusion, with the contribution of high-affinity, carrier-mediated processes. Carrier-mediated transport is via y+, y(+)L, and b(0,+) systems, as assessed by L-arginine uptake and kinetics, inhibition of L-arginine transport by N-ethylmaleimide and neutral amino acids, and L-cystine transport studies. y(+)L and y(+) systems account for the highest transport rate (with y(+)L > y+) and b(0,+) for a residual fraction of the transport. Uptake data correlate to expression of the genes encoding for CAT-1, CAT-2B, 4F2hc, y(+)LAT1, y(+)LAT2, rBAT, and b(0,+)AT, an expression profile that is also shown by the rat thyroid gland. In PC Cl3 cells cationic amino acid uptake is under TSH and/or cAMP control (with transport increasing with increasing TSH concentration), and upregulation of CAT-1, CAT-2B, 4F2hc/y(+)LAT1, and rBAT/b(0,+)AT occurs at the mRNA level under TSH stimulation. Our results provide the first description of an expression pattern of cationic amino acid transport systems in thyroid cells. Furthermore, we provide evidence that extracellular L-arginine is a crucial requirement for normal PC Cl3 cell growth and that long-term L-arginine deprivation negatively influences CAT-2B expression, as it correlates to reduction of CAT-2B mRNA levels.

  13. Long-range transport of anthropogenic sulfur in an on-line tracer model

    SciTech Connect

    Dastoor, A.P.

    1996-12-31

    An Eulerian global meteorological tracer transport model has been constructed for simulating the long range transport of anthropogenic sulfur. The advantage of this model is that the physical processes in the atmosphere, advection and chemical conversions are calculated within one consistent modeling system. The global model presented here includes the dynamics of meteorological and tracer fields, thermodynamics, cloud processes, turbulent boundary layer mixing, multiple 3-dimensional anthropogenic sulfur emission sources, dry and aqueous-phase chemical processes for sulfur, dry deposition process and the precipitation scavenging of sulfur. In contrast to an off-line chemical transport model the dynamic global tracer model is capable of studying the interaction between pollutant, radiative and hydrological budgets and atmospheric circulation.

  14. Multidimensional method-of-lines transport for atmospheric flows over steep terrain using arbitrary meshes

    NASA Astrophysics Data System (ADS)

    Shaw, James; Weller, Hilary; Methven, John; Davies, Terry

    2017-09-01

    Including terrain in atmospheric models gives rise to mesh distortions near the lower boundary that can degrade accuracy and challenge the stability of transport schemes. Multidimensional transport schemes avoid splitting errors on distorted, arbitrary meshes, and method-of-lines schemes have a low computational cost because they perform reconstructions at fixed points. This paper presents a multidimensional method-of-lines finite volume transport scheme, ;cubicFit;, which is designed to be numerically stable on arbitrary meshes. Stability conditions derived from a von Neumann stability analysis are imposed during model initialisation to obtain stability and improve accuracy in distorted regions of the mesh, and near steeply-sloping lower boundaries. Reconstruction calculations depend upon the mesh only, needing just one vector multiply per face per time-stage irrespective of the velocity field. The cubicFit scheme is evaluated using three, idealised numerical tests. The first is a variant of a standard horizontal transport test on severely distorted terrain-following meshes. The second is a new test case that assesses accuracy near the ground by transporting a tracer at the lower boundary over steep terrain on terrain-following meshes, cut-cell meshes, and new, slanted-cell meshes that do not suffer from severe time-step constraints associated with cut cells. The third, standard test deforms a tracer in a vortical flow on hexagonal-icosahedral meshes and cubed-sphere meshes. In all tests, cubicFit is stable and largely insensitive to mesh distortions, and cubicFit results are more accurate than those obtained using a multidimensional linear upwind transport scheme. The cubicFit scheme is second-order convergent regardless of mesh distortions.

  15. A Monte Carlo study of high-energy photon transport in matter: application for multiple scattering investigation in Compton spectroscopy.

    PubMed

    Brancewicz, Marek; Itou, Masayoshi; Sakurai, Yoshiharu

    2016-01-01

    The first results of multiple scattering simulations of polarized high-energy X-rays for Compton experiments using a new Monte Carlo program, MUSCAT, are presented. The program is developed to follow the restrictions of real experimental geometries. The new simulation algorithm uses not only well known photon splitting and interaction forcing methods but it is also upgraded with the new propagation separation method and highly vectorized. In this paper, a detailed description of the new simulation algorithm is given. The code is verified by comparison with the previous experimental and simulation results by the ESRF group and new restricted geometry experiments carried out at SPring-8.

  16. Transport line for a multi-staged laser-plasma acceleration: DACTOMUS

    NASA Astrophysics Data System (ADS)

    Chancé, Antoine; Delferrière, Olivier; Schwindling, Jérôme; Bruni, Christelle; Delerue, Nicolas; Specka, Arnd; Cros, Brgitte; Maynard, Gillies; Paradkar, Bhooshan S.; Mora, Patrick

    2014-03-01

    Laser-plasma acceleration is one of the most promising techniques to reach very high acceleration gradients up to a few hundreds of GeV/m. In order to push this acceleration scheme in the domain of the very high energies, the CILEX project was launched with the laser APOLLON. One of the main topics of this project is to study multi-staged acceleration. It consists in generating and pre-accelerating electrons in a first laser-plasma stage, to transport them up to a second stage where the electrons are accelerated again thanks to another laser pulse. The DACTOMUS project, based on a collaboration CEA-IRFU, CEA-IRAMIS, LAL, LPGP, LULI and LLR, aims at the study and realization of such a transfer line between these two stages. Firstly, a prototype will be developed and tested by the groups of CEA-IRAMIS-SPAM, LPGP, and LULI on the UHI100 facility (CEA-SPAM). This collaboration must enable to realize the first acceleration stage. For the transport line prototype, the main difficulties are to realize a very compact and energy accepting line with diagnostics to characterize the electron beam. We will present here the optics of this line, its performances and the inserted diagnostics.

  17. Monocarboxylate 4 mediated butyrate transport in a rat intestinal epithelial cell line.

    PubMed

    Kekuda, Ramesh; Manoharan, Palanikumar; Baseler, Walter; Sundaram, Uma

    2013-03-01

    Short chain fatty acids (SCFA) are absorbed by carrier mediated uptake in the small intestine by pH-dependent SCFA/HCO3 (-) exchangers on the apical membrane of epithelial cells. Conventional assumption is that MCT1 mediates SCFA/HCO3 (-) exchange in the intestine. Further, due to the presence of multiple such anion exchangers, the identity of the intestinal SCFA/HCO3 (-) has been controversial. The aim of this study was to determine the identities of the butyrate transporter in the intestinal epithelial cells (IEC-18). IEC-18 cells were treated with specific siRNAs for MCT1 and MCT4, and butyrate and lactate uptake studies were performed. Alpha-cyano-4-hydroxycinnamic acid inhibited lactate uptake but not butyrate uptake in IEC-18 cells, indicating that these two substrates are transported via two different transporter systems. MCT1 siRNA treatment abolished both MCT1 mRNA by more than 95 % and protein expression by 83 % as evidenced by RTQ-PCR and western blotting experiments. However, MCT1 siRNA treatment inhibited butyrate uptake upto 24 %, whereas it inhibited lactate uptake significantly by 70 %. Treatment with MCT4 siRNA inhibited MCT4 mRNA expression by 75 % and protein expression by 85 % in these cells. MCT4 siRNA inhibited butyrate uptake by 40 %. Further, several non-steroidal anti-inflammatory drugs (NSAIDs) are transported by the butyrate transporter. Finally, MCT4 siRNA inhibited salicylate uptake by 27 % indicating direct evidence for the transport of salicylate by MCT4. These data indicate that MCT1 is the high affinity lactate transporter and MCT4 is the high affinity butyrate transporter in the intestinal epithelial cell line IEC-18.

  18. Predominant role of plasma membrane monoamine transporters in monoamine transport in 1321N1, a human astrocytoma-derived cell line.

    PubMed

    Naganuma, Fumito; Yoshikawa, Takeo; Nakamura, Tadaho; Iida, Tomomitsu; Harada, Ryuichi; Mohsen, Attayeb S; Miura, Yamato; Yanai, Kazuhiko

    2014-05-01

    Monoamine neurotransmitters should be immediately removed from the synaptic cleft to avoid excessive neuronal activity. Recent studies have shown that astrocytes and neurons are involved in monoamine removal. However, the mechanism of monoamine transport by astrocytes is not entirely clear. We aimed to elucidate the transporters responsible for monoamine transport in 1321N1, a human astrocytoma-derived cell line. First, we confirmed that 1321N1 cells transported dopamine, serotonin, norepinephrine, and histamine in a time- and dose-dependent manner. Kinetics analysis suggested the involvement of low-affinity monoamine transporters, such as organic cation transporter (OCT) 2 and 3 and plasma membrane monoamine transporter (PMAT). Monoamine transport in 1321N1 cells was not Na(+) /Cl(-) dependent but was inhibited by decynium-22, an inhibitor of low-affinity monoamine transporters, which supported the importance of low-affinity transporters. RT-PCR assays revealed that 1321N1 cells expressed OCT3 and PMAT but no other neurotransmitter transporters. Another human astrocytoma-derived cell line, U251MG, and primary human astrocytes also exhibited the same gene expression pattern. Gene-knockdown assays revealed that 1321N1 and primary human astrocytes could transport monoamines predominantly through PMAT and partly through OCT3. These results might indicate that PMAT and OCT3 in human astrocytes are involved in monoamine clearance.

  19. Organelle Transport in Cultured Drosophila Cells: S2 Cell Line and Primary Neurons.

    PubMed Central

    Gelfand, Vladimir I.

    2013-01-01

    Drosophila S2 cells plated on a coverslip in the presence of any actin-depolymerizing drug form long unbranched processes filled with uniformly polarized microtubules. Organelles move along these processes by microtubule motors. Easy maintenance, high sensitivity to RNAi-mediated protein knock-down and efficient procedure for creating stable cell lines make Drosophila S2 cells an ideal model system to study cargo transport by live imaging. The results obtained with S2 cells can be further applied to a more physiologically relevant system: axonal transport in primary neurons cultured from dissociated Drosophila embryos. Cultured neurons grow long neurites filled with bundled microtubules, very similar to S2 processes. Like in S2 cells, organelles in cultured neurons can be visualized by either organelle-specific fluorescent dyes or by using fluorescent organelle markers encoded by DNA injected into early embryos or expressed in transgenic flies. Therefore, organelle transport can be easily recorded in neurons cultured on glass coverslips using living imaging. Here we describe procedures for culturing and visualizing cargo transport in Drosophila S2 cells and primary neurons. We believe that these protocols make both systems accessible for labs studying cargo transport. PMID:24300413

  20. Organelle transport in cultured Drosophila cells: S2 cell line and primary neurons.

    PubMed

    Lu, Wen; Del Castillo, Urko; Gelfand, Vladimir I

    2013-11-20

    Drosophila S2 cells plated on a coverslip in the presence of any actin-depolymerizing drug form long unbranched processes filled with uniformly polarized microtubules. Organelles move along these processes by microtubule motors. Easy maintenance, high sensitivity to RNAi-mediated protein knock-down and efficient procedure for creating stable cell lines make Drosophila S2 cells an ideal model system to study cargo transport by live imaging. The results obtained with S2 cells can be further applied to a more physiologically relevant system: axonal transport in primary neurons cultured from dissociated Drosophila embryos. Cultured neurons grow long neurites filled with bundled microtubules, very similar to S2 processes. Like in S2 cells, organelles in cultured neurons can be visualized by either organelle-specific fluorescent dyes or by using fluorescent organelle markers encoded by DNA injected into early embryos or expressed in transgenic flies. Therefore, organelle transport can be easily recorded in neurons cultured on glass coverslips using living imaging. Here we describe procedures for culturing and visualizing cargo transport in Drosophila S2 cells and primary neurons. We believe that these protocols make both systems accessible for labs studying cargo transport.

  1. Expression of xenobiotic transporters in the human renal proximal tubule cell line RPTEC/TERT1.

    PubMed

    Aschauer, Lydia; Carta, Giada; Vogelsang, Nadine; Schlatter, Eberhard; Jennings, Paul

    2015-12-25

    The kidney is a major target for drug-induced injury, primarily due the fact that it transports a wide variety of chemical entities into and out of the tubular lumen. Here, we investigated the expression of the main xenobiotic transporters in the human renal proximal tubule cell line RPTEC/TERT1 at an mRNA and/or protein level. RPTEC/TERT1 cells expressed OCT2, OCT3, OCTN2, MATE1, MATE2, OAT1, OAT3 and OAT4. The functionality of the OCTs was demonstrated by directional transport of the fluorescent dye 4-Di-1-ASP. In addition, P-glycoprotein activity in RPTEC/TERT1 cells was verified by fluorescent dye retention in presence of various P-glycoprotein inhibitors. In comparison to proliferating cells, contact inhibited RPTEC/TERT1 cells expressed increased mRNA levels of several ABC transporter family members and were less sensitive to cyclosporine A. We conclude that differentiated RPTEC/TERT1 cells are well suited for utilisation in xenobiotic transport and pharmacokinetic studies. Copyright © 2014 Elsevier Ltd. All rights reserved.

  2. Energy transport in plasmas produced by a high brightness krypton fluoride laser focused to a line

    NASA Astrophysics Data System (ADS)

    Al-Hadithi, Y.; Tallents, G. J.; Zhang, J.; Key, M. H.; Norreys, P. A.; Kodama, R.

    1994-05-01

    A high brightness krypton fluoride Raman laser (wavelength 0.268 μm) generating 0.3 TW, 12 ps pulses with 20 μrad beam divergence and a prepulse of less than 10-10 has been focused to produce a 10 μm wide line focus (irradiances ˜0.8-4×1015 W cm-2) on plastic targets with a diagnostic sodium fluoride (NaF) layer buried within the target. Axial and lateral transport of energy has been measured by analysis of x-ray images of the line focus and from x-ray spectra emitted by the layer of NaF with varying overlay thicknesses. It is shown that the ratio of the distance between the critical density surface and the ablation surface to the laser focal width controls lateral transport in a similar manner as for previous spot focus experiments. The measured axial energy transport is compared to medusa [J. P. Christiansen, D. E. T. F. Ashby, and K. V. Roberts, Comput. Phys. Commun. 7, 271 (1974)] one-dimensional hydrodynamic code simulations with an average atom post-processor for predicting spectral line intensities. An energy absorption of ˜10% in the code gives agreement with the experimental axial penetration. Various measured line ratios of hydrogen- and helium-like Na and F are investigated as temperature diagnostics in the NaF layer using the ration [R. W. Lee, B. L. Whitten, and R. E. Strout, J. Quant. Spectrosc. Radiat. Transfer 32, 91 (1984)] code.

  3. Energy transport in plasmas produced by a high brightness krypton fluoride laser focused to a line

    SciTech Connect

    Al-Hadithi, Y.; Tallents, G.J. ); Zhang, J. ); Key, M.H.; Norreys, P.A.; Kodama, R. )

    1994-05-01

    A high brightness krypton fluoride Raman laser (wavelength 0.268 [mu]m) generating 0.3 TW, 12 ps pulses with 20 [mu]rad beam divergence and a prepulse of less than 10[sup [minus]10] has been focused to produce a 10 [mu]m wide line focus (irradiances [similar to]0.8--4[times]10[sup 15] W cm[sup [minus]2]) on plastic targets with a diagnostic sodium fluoride (NaF) layer buried within the target. Axial and lateral transport of energy has been measured by analysis of x-ray images of the line focus and from x-ray spectra emitted by the layer of NaF with varying overlay thicknesses. It is shown that the ratio of the distance between the critical density surface and the ablation surface to the laser focal width controls lateral transport in a similar manner as for previous spot focus experiments. The measured axial energy transport is compared to MEDUSA [J. P. Christiansen, D. E. T. F. Ashby, and K. V. Roberts, Comput. Phys. Commun. [bold 7], 271 (1974)] one-dimensional hydrodynamic code simulations with an average atom post-processor for predicting spectral line intensities. An energy absorption of [similar to]10% in the code gives agreement with the experimental axial penetration. Various measured line ratios of hydrogen- and helium-like Na and F are investigated as temperature diagnostics in the NaF layer using the RATION [R. W. Lee, B. L. Whitten, and R. E. Strout, J. Quant. Spectrosc. Radiat. Transfer [bold 32], 91 (1984)] code.

  4. ScintSim1: A new Monte Carlo simulation code for transport of optical photons in 2D arrays of scintillation detectors

    PubMed Central

    Mosleh-Shirazi, Mohammad Amin; Zarrini-Monfared, Zinat; Karbasi, Sareh; Zamani, Ali

    2014-01-01

    Two-dimensional (2D) arrays of thick segmented scintillators are of interest as X-ray detectors for both 2D and 3D image-guided radiotherapy (IGRT). Their detection process involves ionizing radiation energy deposition followed by production and transport of optical photons. Only a very limited number of optical Monte Carlo simulation models exist, which has limited the number of modeling studies that have considered both stages of the detection process. We present ScintSim1, an in-house optical Monte Carlo simulation code for 2D arrays of scintillation crystals, developed in the MATLAB programming environment. The code was rewritten and revised based on an existing program for single-element detectors, with the additional capability to model 2D arrays of elements with configurable dimensions, material, etc., The code generates and follows each optical photon history through the detector element (and, in case of cross-talk, the surrounding ones) until it reaches a configurable receptor, or is attenuated. The new model was verified by testing against relevant theoretically known behaviors or quantities and the results of a validated single-element model. For both sets of comparisons, the discrepancies in the calculated quantities were all <1%. The results validate the accuracy of the new code, which is a useful tool in scintillation detector optimization. PMID:24600168

  5. Improved accuracy of brain oxygen metabolism measurements using multi-distance diffuse correlation spectroscopy and near infrared spectroscopy together with a Monte Carlo light transport model (Conference Presentation)

    NASA Astrophysics Data System (ADS)

    Carp, Stefan A.; Boas, David A.; Selb, Juliette J.

    2017-02-01

    Diffuse correlation spectroscopy (DCS) is being employed alongside near-infrared spectroscopy (NIRS) measurements to track the cerebral oxygen metabolic rate (CMRO2). However, both techniques employ diffusely reflected light that has traveled mostly through extracerebral tissues. Recent studies indicate that depth sensitivity profiles are different for NIRS vs DCS measurements, with DCS appearing to be more sensitive to the brain than NIRS methods for a given source-detector separation. This mismatch can lead to erroneous conclusions with respect to the amount and perhaps even the direction of change in CMRO2. Recently, our group and others have demonstrated the use of Monte Carlo (MC) based multi-layer, multi-distance fitting, which offers increased accuracy for complex tissue structures such as the adult brain. In this paper we employ a Monte Carlo light transport model based on a realistic head geometry that can be derived from MRI scans (if available) or approximated from head shape measurements. We consider DCS and CW-NIRS measurements taken at two or more distances and analyze simulated data generated using a fully segmented adult brain MRI scan. Through simulations, we explore the improvements offered by our method vs. processing the same measurements with a semi-infinite diffusion model and estimate the impact of errors in geometry and optical properties on relative blood flow and CMRO2 changes.

  6. Implementation and display of Computer Aided Design (CAD) models in Monte Carlo radiation transport and shielding applications

    SciTech Connect

    Burns, T.J.

    1994-03-01

    An Xwindow application capable of importing geometric information directly from two Computer Aided Design (CAD) based formats for use in radiation transport and shielding analyses is being developed at ORNL. The application permits the user to graphically view the geometric models imported from the two formats for verification and debugging. Previous models, specifically formatted for the radiation transport and shielding codes can also be imported. Required extensions to the existing combinatorial geometry analysis routines are discussed. Examples illustrating the various options and features which will be implemented in the application are presented. The use of the application as a visualization tool for the output of the radiation transport codes is also discussed.

  7. Shear lines facilitate transport of reactive trace gases from East Asia into the deep tropics.

    NASA Astrophysics Data System (ADS)

    Donets, V.; Atlas, E. L.; Pan, L.; Schauffler, S.; Honomichl, S.; Hornbrook, R. S.; Apel, E. C.; Weinheimer, A. J.; Campos, T. L.; Hall, S. R.; Ullmann, K.; Navarro, M. A.

    2016-12-01

    Rapid industrialization and economic development in Eastern Asia (EA) has in recent decades led to increases in anthropogenic pollutants in the regional atmosphere. This pollutant burden is transported from local and regional sources into the global atmosphere and has been shown to be a significant source of intercontinental and cross-border anthropogenic pollution. This presentation focuses on one significant mechanism of such pollutant transport from EA into the deep tropics. Meteorology of the EA is dominated by the monsoonal low-level wind reversal, which in its winter phase facilitates episodic incursions of cold air masses from Siberia into the Philippine and South China Seas and to the Western Pacific (WP). In that phase cold surface temperatures give rise to stable low-level inversions, resulting in the capping of the boundary layer. In this flow regime wet deposition is almost completely absent, allowing regional pollution to build-up in the lower troposphere. As the cold air surges are carried eastward across EA and into the WP, sweeping off low-level pollution in the process, they also advance equatorward. As the cold air advances southward, heating from the ocean surface reduces the thermal gradient across the frontal boundary, and by the time that air reaches tropical latitudes all that remains of the front is a wind shift referred to as the shear line. North of the shear line, an air mass still contains the diluted pollutants picked up over the source regions in EA. Here we present measurements of chemically reactive trace gases collected during the CONTRAST mission, an airborne research study conducted during January-February, 2014, over the tropical WP Ocean. This presentation describes shear line facilitated transport of pollution into the tropics during boreal winter and its effects on chemical composition of the troposphere in the deep tropics. This is the first analysis that links the phenomenon of shear lines to pollution transport out of EA

  8. Integrated Tiger Series of electron/photon Monte Carlo transport codes: a user's guide for use on IBM mainframes

    SciTech Connect

    Kirk, B.L.

    1985-12-01

    The ITS (Integrated Tiger Series) Monte Carlo code package developed at Sandia National Laboratories and distributed as CCC-467/ITS by the Radiation Shielding Information Center (RSIC) at Oak Ridge National Laboratory (ORNL) consists of eight codes - the standard codes, TIGER, CYLTRAN, ACCEPT; the P-codes, TIGERP, CYLTRANP, ACCEPTP; and the M-codes ACCEPTM, CYLTRANM. The codes have been adapted to run on the IBM 3081, VAX 11/780, CDC-7600, and Cray 1 with the use of the update emulator UPEML. This manual should serve as a guide to a user running the codes on IBM computers having 370 architecture. The cases listed were tested on the IBM 3033, under the MVS operating system using the VS Fortran Level 1.3.1 compiler.

  9. Three-dimensional dynamic Monte Carlo simulations of driven polymer transport through a hole in a wall

    NASA Astrophysics Data System (ADS)

    Chern, Shyh-Shi; Cárdenas, Alfredo E.; Coalson, Rob D.

    2001-10-01

    Three-dimensional dynamic Monte Carlo simulations of polymer translocation through a cylindrical hole in a planar slab under the influence of an external driving force are performed. The driving force is intended to emulate the effect of a static electric field applied in an electrolytic solution containing charged monomer particles, as is relevant to the translocation of certain biopolymers through protein channel pores embedded in cell membranes. The time evolution of the probability distribution of the translocation coordinate (the number of monomers that have passed through the pore) is extracted from three-dimensional (3-D) simulations over a range of polymer chain lengths. These distributions are compared to the predictions of a 1-D Smoluchowski equation model of the translocation coordinate dynamics. Good agreement is found, with the effective diffusion constant for the 1-D Smoluchowski model being nearly independent of chain length.

  10. An indeterministic Monte Carlo technique for fast time of flight photon transport through optically thick turbid media.

    PubMed

    Behin-Ain, S; van Doorn, T; Patterson, J R

    2002-02-01

    A time-resolved indeterministic Monte Carlo (IMC) simulation technique is proposed for the efficient construction of the early part of the temporal point spread function (TPSF) of visible or near infrared photons transmitted through an optically thick scattering medium. By assuming a detected photon is a superposition of photon components, the photon is repropagated from a point in the original path where a significant delay in forward propagation occurred. A weight is then associated with each subsequently detected photon to compensate for shorter components. The technique is shown to reduce the computation time by a factor of at least 4 when simulating the sub-200 picosecond region of the TPSF and hence provides a useful tool for analysis of single photon detection in transillumination imaging.

  11. Monte Carlo study of coherent diffuse photon transport in a homogeneous turbid medium: a degree-of-coherence based approach.

    PubMed

    Moon, Seyoung; Kim, Donghyun; Sim, Eunji

    2008-01-20

    We employ a Monte Carlo (MC) algorithm to investigate the decoherence of diffuse photons in turbid media. For the MC simulation of coherent photons, the degree of coherence, defined as a random variable for a photon packet, is associated with a decoherence function that depends on the scattering angle and is updated as a photon interacts with a medium via scattering. Using a slab model, the effects of medium scattering properties were studied, which reveals that a linear random variable model for the degree of coherence is in better agreement with experimental results than a sinusoidal model and that decoherence is quick for the initial few scattering events followed by a slow and gradual decrease of coherence.

  12. PENGEOM-A general-purpose geometry package for Monte Carlo simulation of radiation transport in material systems defined by quadric surfaces

    NASA Astrophysics Data System (ADS)

    Almansa, Julio; Salvat-Pujol, Francesc; Díaz-Londoño, Gloria; Carnicer, Artur; Lallena, Antonio M.; Salvat, Francesc

    2016-02-01

    The Fortran subroutine package PENGEOM provides a complete set of tools to handle quadric geometries in Monte Carlo simulations of radiation transport. The material structure where radiation propagates is assumed to consist of homogeneous bodies limited by quadric surfaces. The PENGEOM subroutines (a subset of the PENELOPE code) track particles through the material structure, independently of the details of the physics models adopted to describe the interactions. Although these subroutines are designed for detailed simulations of photon and electron transport, where all individual interactions are simulated sequentially, they can also be used in mixed (class II) schemes for simulating the transport of high-energy charged particles, where the effect of soft interactions is described by the random-hinge method. The definition of the geometry and the details of the tracking algorithm are tailored to optimize simulation speed. The use of fuzzy quadric surfaces minimizes the impact of round-off errors. The provided software includes a Java graphical user interface for editing and debugging the geometry definition file and for visualizing the material structure. Images of the structure are generated by using the tracking subroutines and, hence, they describe the geometry actually passed to the simulation code.

  13. MCMini: Monte Carlo on GPGPU

    SciTech Connect

    Marcus, Ryan C.

    2012-07-25

    MCMini is a proof of concept that demonstrates the possibility for Monte Carlo neutron transport using OpenCL with a focus on performance. This implementation, written in C, shows that tracing particles and calculating reactions on a 3D mesh can be done in a highly scalable fashion. These results demonstrate a potential path forward for MCNP or other Monte Carlo codes.

  14. Effect of the normalized prescription isodose line on the magnitude of Monte Carlo vs. pencil beam target dose differences for lung stereotactic body radiotherapy.

    PubMed

    Zheng, Dandan; Zhang, Qinghui; Liang, Xiaoying; Zhu, Xiaofeng; Verma, Vivek; Wang, Shuo; Zhou, Sumin

    2016-07-01

    In lung stereotactic body radiotherapy (SBRT) cases, the pencil beam (PB) dose calculation algorithm is known to overestimate target dose as compared to the more accurate Monte Carlo (MC) algorithm. We investigated whether changing the normalized prescription isodose line affected the magnitude of MC vs. PB target dose differences. Forty-eight patient plans and twenty virtual-tumor phantom plans were studied. For patient plans, four alternative plans prescribed to 60%, 70%, 80%, and 90% isodose lines were each created for 12 patients who previously received lung SBRT treatments. Using 6 MV dynamic conformal arcs, the plans were individually optimized to achieve similar dose coverage and conformity for all plans of the same patient, albeit at the different prescription levels. These plans, having used a PB algorithm, were all recalculated with MC to compare the target dose differences. The relative MC vs. PB target dose variations were investigated by comparing PTV D95, Dmean, and D5 loss at the four prescription levels. The MC-to-PB ratio of the plan heterogeneity index (HI) was also evaluated and compared among different isodose levels. To definitively demonstrate the cause of the isodose line dependence, a simulated phantom study was conducted using simple, spherical virtual tumors planned with uniform block margins. The tumor size and beam energy were also altered in the phantom study to investigate the interplay between these confounding factors and the isodose line effect. The magnitude of the target dose overestimation by PB was greater for higher prescription isodose levels. The MC vs. PB reduction in the target dose coverage indices, D95 and V100 of PTV, were found to monotonically increase with increasing isodose lines from 60% to 90%, resulting in more pronounced target dose coverage deficiency at higher isodose prescription levels. No isodose level-dependent trend was observed for the dose errors in the target mean or high dose indices, Dmean or D5. The

  15. Design of the e-beam transport line for the AFEL

    SciTech Connect

    Wang, T.F.; Chan, K.C.D.; Sheffield, R.L.; Wilson, W.L.

    1991-01-01

    The Advanced Free-Electron Laser (AFEL) currently construction at Los Alamos National Laboratory is a compact high-performance free- electron laser (FE). The design of the AFEL integrates our most advanced accelerator and wiggler components. The 1.2-m-long accelerator produces a high-brightness electron-beam (e-beam) of 200- to 300-A peak current with an energy of 20 MeV. The beamline incorporates variable permanent-magnet quadrupoles and dipoles for electron beam transport. The AFEL will ultimately use 10- to 20-cm-long slotted-tube pulsed microwigglers having a period of 3-mm to 1-cm. In this paper, we shall present the design of the e-beam transport line and discuss the various design considerations involved. 7 refs., 5 figs., 3 tabs.

  16. Transport of tetraethylammonium by a kidney cell line (LLC-PK sub 1 )

    SciTech Connect

    Fauth, C.; Rossier, B.; Roch-Ramel, F. )

    1988-03-01

    The authors investigated whether the LLC-PK{sub 1} epithelial cell lines (which shows many characteristics of proximal tubular cells) also is capable of transporting an organic ion. Suspended LLC-PK{sub 1} cells accumulated tetraethylammonium (TEA). The uptake showed characteristics of a facilitated mechanism; TEA uptake was saturable and temperature-dependent and was inhibited by other organic cations. Quinine and mepiperphenidol were the most potent inhibitors, whereas N{sup 1}-methylnicotinamide and morphine inhibited the transport system only slightly at doses of 10{sup {minus}3} M. Basolateral-to-apical TEA flux through LLC-PK{sub 1} monolayers was five to six times larger than that of mannitol, a nontransported compound, whereas apical-to-basolateral TEA and mannitol fluxes were equal. Only the basolateral-to-apical TEA flux was inhibited by quinine. Under similar experimental conditions, no transport of p-aminohippuric acid was observed. It is concluded that LLC-PK{sub 1} cells are able to transport TEA, as do cells of the proximal tubule.

  17. Transport of intense ion beams and space charge compensation issues in low energy beam lines (invited).

    PubMed

    Chauvin, N; Delferrière, O; Duperrier, R; Gobin, R; Nghiem, P A P; Uriot, D

    2012-02-01

    Over the last few years, the interest of the international scientific community for high power accelerators in the megawatt range has been increasing. For such machines, the ion source has to deliver a beam intensity that ranges from several tens up to a hundred of mA. One of the major challenges is to extract and transport the beam while minimizing the emittance growth and optimizing its injection into the radio frequency quadrupole. Consequently, it is crucial to perform precise simulations and cautious design of the low energy beam transport (LEBT) line. In particular, the beam dynamics calculations have to take into account not only the space charge effects but also the space charge compensation of the beam induced by ionization of the residual gas. The physical phenomena occurring in a high intensity LEBT and their possible effects on the beam are presented, with a particular emphasis on space charge compensation. Then, beam transport issues in different kind of LEBTs are briefly reviewed. The SOLMAXP particle-in-cell code dedicated to the modeling of the transport of charge particles under a space charge compensation regime is described. Finally, beam dynamics simulations results obtained with SOLMAXP are presented in the case of international fusion materials irradiation facility injector.

  18. Mechanisms of gentamicin transport in kidney epithelial cell line (LLC-PK1).

    PubMed

    Saito, H; Inui, K; Hori, R

    1986-09-01

    The characteristics of gentamicin transport have been studied by using cultured kidney epithelial cell line LLC-PK1. The uptake of gentamicin by the LLC-PK1 cells appeared to be linear for 30 min and reached the equilibrium at day 1. Marked stimulation of gentamicin uptake was observed on the development of a confluent cell density, accompanied by the increases of marker enzyme activities and Na+-dependent D-glucose transport in the apical membranes. Gentamicin uptake was inhibited by metabolic inhibitors such as rotenone and 2,4-dinitrophenol, and was inhibited competitively in the presence of other aminoglycosides. Depending on the external calcium concentration, calcium ionophore A23187 stimulated gentamicin uptake, whereas ethylene glycol bis(beta-aminoethyl ether)N,N1-tetraacetic acid, a calcium chelator, inhibited gentamicin uptake. These results suggest that gentamicin uptake by the LLC-PK1 cells may be mediated via specialized transport system, and calcium ion movement may play an important role as a regulatory factor for this transport system.

  19. Transmission line model for strained quantum well lasers including carrier transport and carrier heating effects.

    PubMed

    Xia, Mingjun; Ghafouri-Shiraz, H

    2016-03-01

    This paper reports a new model for strained quantum well lasers, which are based on the quantum well transmission line modeling method where effects of both carrier transport and carrier heating have been included. We have applied this new model and studied the effect of carrier transport on the output waveform of a strained quantum well laser both in time and frequency domains. It has been found that the carrier transport increases the turn-on, turn-off delay times and damping of the quantum well laser transient response. Also, analysis in the frequency domain indicates that the carrier transport causes the output spectrum of the quantum well laser in steady state to exhibit a redshift which has a narrower bandwidth and lower magnitude. The simulation results of turning-on transients obtained by the proposed model are compared with those obtained by the rate equation laser model. The new model has also been used to study the effects of pump current spikes on the laser output waveforms properties, and it was found that the presence of current spikes causes (i) wavelength blueshift, (ii) larger bandwidth, and (iii) reduces the magnitude and decreases the side-lobe suppression ratio of the laser output spectrum. Analysis in both frequency and time domains confirms that the new proposed model can accurately predict the temporal and spectral behaviors of strained quantum well lasers.

  20. Beam Transport of 4 GeV Protons from AGS to the Proton Interrogation Target of the Neutrino Line (Z_line) and Effect of the Air on the Transported Beam

    SciTech Connect

    Tsoupas,N.; Ahrens, L.; Pile, P.; Thieberger, P.; Murray, M.M.

    2008-10-01

    As part of the preparation for the Proton Interrogation Experiment, we have calculated the beam optics for the transport of 4 GeV protons, from the AGS extraction point, to the 'Cross-Section Target Wheel 1' and to the 'Proton Interrogation Target'. In this technical note we present three possible beam-transports each corresponding to a particular Fast Extracted Beam W B setup of the AGS. In addition we present results on the effect of the atmospheric air, (which fills the drift space of the last 100 [m] of the transport line), on the size of the beam, at two locations along the drift space, one location at the middle of the drift space and the other at the end where the 'Proton Interrogation Target' is placed. All the beam transports mentioned above require the removal of the WD1 dipole magnet, which is the first magnet of the W-line, because it acts as a limiting beam aperture, and the magnet is not used in the beam transport. An alternative solution of a beam transport, which does not require the removal of the WD1 magnet, is also presented. In this solution, which models the transport line using the TURTLE computer code[7], the vertical beam sizes at the location of the WD1 magnet is minimized to allow 'lossless' beam transport at the location of the WD1 magnet. A similar solution, but using a MAD model of the line, is also presented.

  1. A new optical design for the BNL isotope production transport line

    SciTech Connect

    Kponou, A.; Alessi, J.G.; Raparia, D.; Mapes, M.; Tsoupas, N.

    1996-10-01

    The 200 MeV linac at BNL has recently been upgraded. As a result, 2.5 times more average beam current can be delivered to the Brookhaven Isotope Resource Center (BIRC), formerly called BLIP, a facility which produces radionuclides and radiopharmaceutical for the medical community, and also supports a research program seeking more effective diagnostic and therapeutic agents. The optics of the beam transport line to BIRC was redesigned to (a) reduce transverse fluctuations of the beam at the target due to any linac energy fluctuations, (b) produce a flat beam distribution at the target, in order to avoid melting certain target materials, and (c) handle the higher beam intensity while keeping radiation levels low. A profile monitor was also modified to monitor the flatness of the beam using the algebraic reconstruction technique (ART). The above improvements will be described, and results of the commissioning of the line during the 1996 running period will be discussed.

  2. Survey and alignment of high energy physics accelerators and transport lines

    SciTech Connect

    Ruland, R.E.

    1992-11-01

    This talk summarizes the survey and alignment processes of accelerators and transport lines and discusses the propagation of errors associated with these processes. The major geodetic principles governing the survey and alignment measurement space are revisited and their relationship to a lattice coordinate system shown. The paper continues with a broad overview about the activities involved in the step by step sequence from initial absolute alignment to final smoothing. Emphasis is given to the relative alignment of components, in particular to the importance of incorporating methods to remove residual systematic effects in surveying and alignment operations.

  3. Computation of radiation transport using feautrier variables. II. Spectrum line formation in moving media

    SciTech Connect

    Mihalas, D.; Kunasz, P.B.

    1986-05-01

    This paper contains a review of methods for solving line transport problems in moving media in terms of the symmetric/antisymmetric radiation-field averages introduced by P. Feautrier. These techniques have proven to be popular and effective in a wide range of astrophysical applications, nd may be useful in other areas of computational physics. We outline the physicl motivation, formulation, and algorithms for both observer-frame and comoving-frame methods, each of which has distinctive advantages and disadvantages. We cite basic references to provide easy access to the astrophysical literature for workers in other fields.

  4. Functional Coding Variation in Recombinant Inbred Mouse Lines Reveals Novel Serotonin Transporter-Associated Phenotypes

    SciTech Connect

    Carneiro, Ana; Airey, David; Thompson, Brent; Zhu, C; Rinchik, Eugene M; Lu, Lu; Chesler, Elissa J; Erikson, Keith; Blakely, Randy

    2009-01-01

    The human serotonin (5-hydroxytryptamine, 5-HT) transporter (hSERT, SLC6A4) figures prominently in the etiology or treatment of many prevalent neurobehavioral disorders including anxiety, alcoholism, depression, autism and obsessive-compulsive disorder (OCD). Here we utilize naturally occurring polymorphisms in recombinant inbred (RI) lines to identify novel phenotypes associated with altered SERT function. The widely used mouse strain C57BL/6J, harbors a SERT haplotype defined by two nonsynonymous coding variants (Gly39 and Lys152 (GK)). At these positions, many other mouse lines, including DBA/2J, encode Glu39 and Arg152 (ER haplotype), assignments found also in hSERT. Synaptosomal 5-HT transport studies revealed reduced uptake associated with the GK variant. Heterologous expression studies confirmed a reduced SERT turnover rate for the GK variant. Experimental and in silico approaches using RI lines (C57Bl/6J X DBA/2J=BXD) identifies multiple anatomical, biochemical and behavioral phenotypes specifically impacted by GK/ER variation. Among our findings are multiple traits associated with anxiety and alcohol consumption, as well as of the control of dopamine (DA) signaling. Further bioinformatic analysis of BXD phenotypes, combined with biochemical evaluation of SERT knockout mice, nominates SERT-dependent 5-HT signaling as a major determinant of midbrain iron homeostasis that, in turn, dictates ironregulated DA phenotypes. Our studies provide a novel example of the power of coordinated in vitro, in vivo and in silico approaches using murine RI lines to elucidate and quantify the system-level impact of gene variation.

  5. Construction and commissioning of direct beam transport line for PF-AR

    NASA Astrophysics Data System (ADS)

    Higashi, Nao; Asaoka, Seiji; Furukawa, Kazuro; Haga, Kaiichi; Harada, Kentaro; Higo, Toshiyasu; Honda, Tohru; Honma, Hiroyuki; Iida, Naoko; Iwase, Hiroshi; Kakihara, Kazuhisa; Kamitani, Takuya; Kikuchi, Mitsuo; Kishimoto, Yuji; Kobayashi, Yukinori; Kodama, Kota; Kudo, Kikuo; Kume, Tatsuya; Mikawa, Katsuhiko; Mimashi, Toshihiro; Miyahara, Fusashi; Miyauchi, Hiroshi; Nagahashi, Shinya; Nakamura, Hajime; Nakamura, Norio; Natsui, Takuya; Nigorikawa, Kazuyuki; Niwa, Yasuhiro; Nogami, Takashi; Obina, Takashi; Ogawa, Yujiro; Ono, Masaaki; Ozaki, Toshiyuki; Sagehashi, Hidenori; Sanami, Toshiya; Sato, Masayuki; Satoh, Masanori; Suwada, Tsuyoshi; Tadano, Mikito; Tahara, Toshihiro; Takai, Ryota; Takaki, Hiroyuki; Takasaki, Seiji; Tanaka, Madoka; Tanimoto, Yasunori; Tawada, Masafumi; Toge, Nobu; Uchiyama, Takashi; Ueda, Akira; Yamada, Yusuke; Yamamoto, Masahiro; Yoshida, Mitsuhiro

    2017-07-01

    PF-AR was constructed as an accumulator ring for TRISTAN, and in the KEKB era it has been revitalized as a 6.5 GeV synchrotron radiation source. The injection energy was 3 GeV and the beam was accelerated to 6.5 GeV prior to the user run. The original beam transport line (BT) from the LINAC to the PF-AR shared its upstream part with the the BT line of KEKB High Energy Ring (HER). The injection-mode change from PF-AR to HER or vice versa needs about 10 minutes for the magnet cycling procedure of the shared part. In SuperKEKB, the upgrade of KEKB, the lifetime of HER is about 10 minutes. The mode-switch operation of the BT is, therefore, not allowed for maintaining the highest luminosity of the SuperKEKB. In order to avoid this problem, a new 6.5 GeV BT line dedicated to PF-AR has been constructed. This also enables the top-up injection for the user run. The commissioning of the new BT line has been completed in this March, and now the first user run has been operated successfully.

  6. The GEANT4 toolkit capability in the hadron therapy field: simulation of a transport beam line

    NASA Astrophysics Data System (ADS)

    Cirrone, G. A. P.; Cuttone, G.; Di Rosa, F.; Raffaele, L.; Russo, G.; Guatelli, S.; Pia, M. G.

    2006-01-01

    At Laboratori Nazionali del Sud of the Instituto Nazionale di Fisica Nucleare of Catania (Sicily, Italy), the first Italian hadron therapy facility named CATANA (Centro di AdroTerapia ed Applicazioni Nucleari Avanzate) has been realized. Inside CATANA 62 MeV proton beams, accelerated by a superconducting cyclotron, are used for the radiotherapeutic treatments of some types of ocular tumours. Therapy with hadron beams still represents a pioneer technique, and only a few centers worldwide can provide this advanced specialized cancer treatment. On the basis of the experience so far gained, and considering the future hadron-therapy facilities to be developed (Rinecker, Munich Germany, Heidelberg/GSI, Darmstadt, Germany, PSI Villigen, Switzerland, CNAO, Pavia, Italy, Centro di Adroterapia, Catania, Italy) we decided to develop a Monte Carlo application based on the GEANT4 toolkit, for the design, the realization and the optimization of a proton-therapy beam line. Another feature of our project is to provide a general tool able to study the interactions of hadrons with the human tissue and to test the analytical-based treatment planning systems actually used in the routine practice. All the typical elements of a hadron-therapy line, such as diffusers, range shifters, collimators and detectors were modelled. In particular, we simulated the Markus type ionization chamber and a Gaf Chromic film as dosimeters to reconstruct the depth (Bragg peak and Spread Out Bragg Peak) and lateral dose distributions, respectively. We validated our simulated detectors comparing the results with the experimental data available in our facility.

  7. ITS version 5.0 :the integrated TIGER series of coupled electron/Photon monte carlo transport codes with CAD geometry.

    SciTech Connect

    Franke, Brian Claude; Kensek, Ronald Patrick; Laub, Thomas William

    2005-09-01

    ITS is a powerful and user-friendly software package permitting state-of-the-art Monte Carlo solution of linear time-independent coupled electron/photon radiation transport problems, with or without the presence of macroscopic electric and magnetic fields of arbitrary spatial dependence. Our goal has been to simultaneously maximize operational simplicity and physical accuracy. Through a set of preprocessor directives, the user selects one of the many ITS codes. The ease with which the makefile system is applied combines with an input scheme based on order-independent descriptive keywords that makes maximum use of defaults and internal error checking to provide experimentalists and theorists alike with a method for the routine but rigorous solution of sophisticated radiation transport problems. Physical rigor is provided by employing accurate cross sections, sampling distributions, and physical models for describing the production and transport of the electron/photon cascade from 1.0 GeV down to 1.0 keV. The availability of source code permits the more sophisticated user to tailor the codes to specific applications and to extend the capabilities of the codes to more complex applications. Version 5.0, the latest version of ITS, contains (1) improvements to the ITS 3.0 continuous-energy codes, (2) multigroup codes with adjoint transport capabilities, (3) parallel implementations of all ITS codes, (4) a general purpose geometry engine for linking with CAD or other geometry formats, and (5) the Cholla facet geometry library. Moreover, the general user friendliness of the software has been enhanced through increased internal error checking and improved code portability.

  8. Modeling of tungsten transport in the linear plasma device PSI-2 with the 3D Monte-Carlo code ERO

    NASA Astrophysics Data System (ADS)

    Marenkov, E.; Eksaeva, A.; Borodin, D.; Kirschner, A.; Laengner, M.; Kurnaev, V.; Kreter, A.; Coenen, J. W.; Rasinski, M.

    2015-08-01

    The ERO code was modified for modeling of plasma-surface interactions and impurities transport in the PSI-2 installation. Results of experiments on tungsten target irradiation with argon plasma were taken as a benchmark for the new version of the code. Spectroscopy data modeled with the code are in good agreement with experimental ones. Main factors contributing to observed discrepancies are discussed.

  9. First-principle-based full-dispersion Monte Carlo simulation of the anisotropic phonon transport in the wurtzite GaN thin film

    SciTech Connect

    Wu, Ruikang; Hu, Run E-mail: luoxb@hust.edu.cn; Luo, Xiaobing E-mail: luoxb@hust.edu.cn

    2016-04-14

    In this study, we developed a first-principle-based full-dispersion Monte Carlo simulation method to study the anisotropic phonon transport in wurtzite GaN thin film. The input data of thermal properties in MC simulations were calculated based on the first-principle method. The anisotropy of thermal conductivity in bulk wurtzite GaN is found to be strengthened by isotopic scatterings and reduced temperature, and the anisotropy reaches 40.08% for natural bulk GaN at 100 K. With the GaN thin film thickness decreasing, the anisotropy of the out-of-plane thermal conductivity is heavily reduced due to both the ballistic transport and the less importance of the low-frequency phonons with anisotropic group velocities. On the contrary, it is observed that the in-plane thermal conductivity anisotropy of the GaN thin film is strengthened by reducing the film thickness. And the anisotropy reaches 35.63% when the natural GaN thin film thickness reduces to 50 nm at 300 K with the degree of specularity being zero. The anisotropy is also improved by increasing the surface roughness of the GaN thin film.

  10. A multi-subband Monte Carlo study on dominance of scattering mechanisms over carrier transport in sub-10-nm Si nanowire FETs.

    PubMed

    Ryu, Hoon

    2016-12-01

    Dominance of various scattering mechanisms in determination of the carrier mobility is examined for silicon (Si) nanowires of sub-10-nm cross-sections. With a focus on p-type channels, the steady-state hole mobility is studied with multi-subband Monte Carlo simulations to consider quantum effects in nanoscale channels. Electronic structures of gate-all-around nanowires are described with a 6-band k · p model. Channel bandstructures and electrostatics under gate biases are determined self-consistently with Schrödinger-Poisson simulations. Modeling results not only indicate that the hole mobility is severely degraded as channels have smaller cross-sections and are inverted more strongly but also confirm that the surface roughness scattering degrades the mobility more severely than the phonon scattering does. The surface roughness scattering affects carrier transport more strongly in narrower channels, showing ∼90 % dominance in determination of the mobility. At the same channel population, [110] channels suffer from the surface roughness scattering more severely than [100] channels do, due to the stronger corner effect and larger population of carriers residing near channel surfaces. With a sound theoretical framework coupled to the spatial distribution of channel carriers, this work may present a useful guideline for understanding hole transport in ultra-narrow Si nanowires.

  11. Modeling the uniform transport in thin film SOI MOSFETs with a Monte-Carlo simulator for the 2D electron gas

    NASA Astrophysics Data System (ADS)

    Lucci, Luca; Palestri, Pierpaolo; Esseni, David; Selmi, Luca

    2005-09-01

    In this paper, we present simulations of some of the most relevant transport properties of the inversion layer of ultra-thin film SOI devices with a self-consistent Monte-Carlo transport code for a confined electron gas. We show that size induced quantization not only decreases the low-field mobility (as experimentally found in [Uchida K, Koga J, Ohba R, Numata T, Takagi S. Experimental eidences of quantum-mechanical effects on low-field mobility, gate-channel capacitance and threshold voltage of ultrathin body SOI MOSFETs, IEEE IEDM Tech Dig 2001;633-6; Esseni D, Mastrapasqua M, Celler GK, Fiegna C, Selmi L, Sangiorgi E. Low field electron and hole mobility of SOI transistors fabricated on ultra-thin silicon films for deep sub-micron technology application. IEEE Trans Electron Dev 2001;48(12):2842-50; Esseni D, Mastrapasqua M, Celler GK, Fiegna C, Selmi L, Sangiorgi E, An experimental study of mobility enhancement in ultra-thin SOI transistors operated in double-gate mode, IEEE Trans Electron Dev 2003;50(3):802-8. [1-3

  12. System and method for radiation dose calculation within sub-volumes of a monte carlo based particle transport grid

    DOEpatents

    Bergstrom, Paul M.; Daly, Thomas P.; Moses, Edward I.; Patterson, Jr., Ralph W.; Schach von Wittenau, Alexis E.; Garrett, Dewey N.; House, Ronald K.; Hartmann-Siantar, Christine L.; Cox, Lawrence J.; Fujino, Donald H.

    2000-01-01

    A system and method is disclosed for radiation dose calculation within sub-volumes of a particle transport grid. In a first step of the method voxel volumes enclosing a first portion of the target mass are received. A second step in the method defines dosel volumes which enclose a second portion of the target mass and overlap the first portion. A third step in the method calculates common volumes between the dosel volumes and the voxel volumes. A fourth step in the method identifies locations in the target mass of energy deposits. And, a fifth step in the method calculates radiation doses received by the target mass within the dosel volumes. A common volume calculation module inputs voxel volumes enclosing a first portion of the target mass, inputs voxel mass densities corresponding to a density of the target mass within each of the voxel volumes, defines dosel volumes which enclose a second portion of the target mass and overlap the first portion, and calculates common volumes between the dosel volumes and the voxel volumes. A dosel mass module, multiplies the common volumes by corresponding voxel mass densities to obtain incremental dosel masses, and adds the incremental dosel masses corresponding to the dosel volumes to obtain dosel masses. A radiation transport module identifies locations in the target mass of energy deposits. And, a dose calculation module, coupled to the common volume calculation module and the radiation transport module, for calculating radiation doses received by the target mass within the dosel volumes.

  13. Design, Modeling and Simulations in the RACE Project: Preliminary study for the development of a transport line

    SciTech Connect

    Maidana, C. O.; Hunt, A. W.; Beller, D.; Folkman, K.

    2007-02-12

    As part of the Reactor Accelerator Coupling Experiment (RACE) a set of preliminary studies were conducted to design a transport beam line that could bring a 25 MeV electron beam from a Linear Accelerator to a neutron-producing target inside a subcritical system. Because of the relatively low energy beam, the beam size and a relatively long beam line (implicating a possible divergence problem) different parameters and models were studied before a final design could be submitted for assembly. This report shows the first results obtained from different simulations of the transport line optics and dynamics.

  14. Use of population pharmacokinetic modeling and Monte Carlo simulation to describe the pharmacodynamic profile of cefditoren in plasma and epithelial lining fluid.

    PubMed

    Lodise, Thomas P; Kinzig-Schippers, Martina; Drusano, George L; Loos, Ulrich; Vogel, Friedrich; Bulitta, Jürgen; Hinder, Markus; Sörgel, Fritz

    2008-06-01

    Cefditoren is a broad-spectrum, oral cephalosporin that is highly active against clinically relevant respiratory tract pathogens, including multidrug-resistant Streptococcus pneumoniae. This study described its pharmacodynamic profile in plasma and epithelial lining fluid (ELF). Plasma and ELF pharmacokinetic data were obtained from 24 patients under fasting conditions. Cefditoren and urea concentrations were determined in plasma and bronchoalveolar lavage fluid by liquid chromatography-tandem mass spectrometry. Concentration-time profiles in plasma and ELF were modeled using a model with three disposition compartments and first-order absorption, elimination, and transfer. Pharmacokinetic parameters were identified in a population pharmacokinetic analysis (big nonparametric adaptive grid with adaptive gamma). Monte Carlo simulation (9,999 subjects) was performed with the ADAPT II program to estimate the probability of target attainment at which the free-cefditoren plasma concentrations (88%) protein binding and total ELF concentrations exceeded the MIC for 33% of the dosing interval for 400 mg cefditoren given orally every 12 h. After the Bayesian step, the overall fits of the model to the data were good, and plots of predicted versus observed concentrations for plasma and ELF showed slopes and intercepts very close to the ideal values of 1.0 and 0.0, respectively. In the plasma probability of target attainment analysis, the probability of achieving a time for which free, or unbound, plasma concentration exceeds the MIC of the organism for 33% of the dosing interval was <80% for a MIC of >0.06 mg/liter. Similar to plasma, the probability of achieving a time above the MIC of 33% was <80% for MIC of >0.06 mg/liter in ELF. Cefditoren was found to have a low probability of achieving a bacteriostatic effect against MICs of >0.06 mg/liter, which includes most S. pneumoniae isolates with intermediate susceptibility to penicillin, when given in the fasting state in both

  15. The effects of magnetic fringe fields on beam dynamics in a beam transport line of a terahertz FEL source

    NASA Astrophysics Data System (ADS)

    Zeng, Han; Xiong, Yongqian; Pei, Yuanji

    2014-11-01

    The transport line used in a terahertz FEL device has to transport electron beam through the entire system efficiently and meet the requirements of the beam parameters at the undulator entrance. Due to space limitations, the size of the magnets (five quadrupoles and two bending magnets) employed in the transport line was limited, and some devices were densely packed. In this paper, analyses of the effect of fringe fields and magnetic interference of magnets are presented. 3D models of these magnets are built and their linear optical properties are compared with those obtained by hard edge models. The results indicated that the effects of these factors are significant and they would cause a mismatch of the beam at the exit of the transport line under the preliminary lattice design. To solve this problem, the beam was re-matched using the particle swarm optimization algorithm.

  16. Differences in the expression of endogenous efflux transporters in MDR1-transfected versus wildtype cell lines affect P-glycoprotein mediated drug transport.

    PubMed

    Kuteykin-Teplyakov, Konstantin; Luna-Tortós, Carlos; Ambroziak, Kamila; Löscher, Wolfgang

    2010-07-01

    P-glycoprotein (Pgp) efflux assays are widely used to identify Pgp substrates. The kidney cell lines Madin-Darby canine kidney (MDCK)-II and LLC-PK1, transfected with human MDR1 (ABCB1) are used to provide recombinant models of drug transport. Endogenous transporters in these cells may contribute to the activities of recombinant transporters, so that drug transport in MDR1-transfected cells is often corrected for the transport obtained in parental (wildtype) cells. However, expression of endogenous transporters may vary between transfected and wildtype cells, so that this correction may cause erroneous data. Here, we have measured the expression of endogenous efflux transporters in transfected and wildtype MDCK-II or LLC cells and the consequences for Pgp-mediated drug transport. Using quantitative real-time RT-PCR, we determined the expression of endogenous Mdr1 mRNA and other efflux transporters in wildtype and MDR1-transfected MDCK-II and LLC cells. Transcellular transport was measured with the test substrate vinblastine. In MDR1-transfected MDCK cells, expression of endogenous (canine) Mdr1 and Mrp2 (Abcc2) mRNA was markedly lower than in wildtype cells, whereas MDR1-transfected LLC cells exhibited comparable Mdr1 but strikingly higher Mrp2 mRNA levels than wildtype cells. As a consequence, transport of vinblastine by human Pgp in efflux experiments was markedly underestimated when transport in MDR1-transfected MDCK cells was corrected for transport obtained in wildtype cells. This problem did not occur in LLC cells. Differences in the expression of endogenous efflux transporters between transfected and wildtype MDCK cells provide a potential bias for in vitro studies on Pgp-mediated drug transport.

  17. Differences in the expression of endogenous efflux transporters in MDR1-transfected versus wildtype cell lines affect P-glycoprotein mediated drug transport

    PubMed Central

    Kuteykin-Teplyakov, Konstantin; Luna-Tortós, Carlos; Ambroziak, Kamila; Löscher, Wolfgang

    2010-01-01

    Background and purpose: P-glycoprotein (Pgp) efflux assays are widely used to identify Pgp substrates. The kidney cell lines Madin-Darby canine kidney (MDCK)-II and LLC-PK1, transfected with human MDR1 (ABCB1) are used to provide recombinant models of drug transport. Endogenous transporters in these cells may contribute to the activities of recombinant transporters, so that drug transport in MDR1-transfected cells is often corrected for the transport obtained in parental (wildtype) cells. However, expression of endogenous transporters may vary between transfected and wildtype cells, so that this correction may cause erroneous data. Here, we have measured the expression of endogenous efflux transporters in transfected and wildtype MDCK-II or LLC cells and the consequences for Pgp-mediated drug transport. Experimental approach: Using quantitative real-time RT-PCR, we determined the expression of endogenous Mdr1 mRNA and other efflux transporters in wildtype and MDR1-transfected MDCK-II and LLC cells. Transcellular transport was measured with the test substrate vinblastine. Key results: In MDR1-transfected MDCK cells, expression of endogenous (canine) Mdr1 and Mrp2 (Abcc2) mRNA was markedly lower than in wildtype cells, whereas MDR1-transfected LLC cells exhibited comparable Mdr1 but strikingly higher Mrp2 mRNA levels than wildtype cells. As a consequence, transport of vinblastine by human Pgp in efflux experiments was markedly underestimated when transport in MDR1-transfected MDCK cells was corrected for transport obtained in wildtype cells. This problem did not occur in LLC cells. Conclusions and implications: Differences in the expression of endogenous efflux transporters between transfected and wildtype MDCK cells provide a potential bias for in vitro studies on Pgp-mediated drug transport. PMID:20590635

  18. Fano effect and bound state in continuum in electron transport through an armchair graphene nanoribbon with line defect.

    PubMed

    Gong, Wei-Jiang; Sui, Xiao-Yan; Wang, Yan; Yu, Guo-Dong; Chen, Xiao-Hui

    2013-07-22

    : Electron transport properties in an armchair graphene nanoribbon are theoretically investigated by considering the presence of line defect. It is found that the line defect causes the abundant Fano effects and bound state in continuum (BIC) in the electron transport process, which are tightly dependent on the width of the nanoribbon. By plotting the spectra of the density of electron states of the line defect, we see that the line defect induces some localized quantum states around the Dirac point and that the different localizations of these states lead to these two kinds of transport results. Next, the Fano effect and BIC phenomenon are detailedly described via the analysis about the influence of the structure parameters. According to the numerical results, we propose such a structure to be a promising candidate for graphene nanoswitch. PACS: 81.05.Uw, 71.55.-i, 73.23.-b, 73.25.+i.

  19. Fano effect and bound state in continuum in electron transport through an armchair graphene nanoribbon with line defect

    PubMed Central

    2013-01-01

    Electron transport properties in an armchair graphene nanoribbon are theoretically investigated by considering the presence of line defect. It is found that the line defect causes the abundant Fano effects and bound state in continuum (BIC) in the electron transport process, which are tightly dependent on the width of the nanoribbon. By plotting the spectra of the density of electron states of the line defect, we see that the line defect induces some localized quantum states around the Dirac point and that the different localizations of these states lead to these two kinds of transport results. Next, the Fano effect and BIC phenomenon are detailedly described via the analysis about the influence of the structure parameters. According to the numerical results, we propose such a structure to be a promising candidate for graphene nanoswitch. PACS 81.05.Uw, 71.55.-i, 73.23.-b, 73.25.+i PMID:23870061

  20. Application of Monte Carlo techniques to optimization of high-energy beam transport in a stochastic environment

    NASA Technical Reports Server (NTRS)

    Parrish, R. V.; Dieudonne, J. E.; Filippas, T. A.

    1971-01-01

    An algorithm employing a modified sequential random perturbation, or creeping random search, was applied to the problem of optimizing the parameters of a high-energy beam transport system. The stochastic solution of the mathematical model for first-order magnetic-field expansion allows the inclusion of state-variable constraints, and the inclusion of parameter constraints allowed by the method of algorithm application eliminates the possibility of infeasible solutions. The mathematical model and the algorithm were programmed for a real-time simulation facility; thus, two important features are provided to the beam designer: (1) a strong degree of man-machine communication (even to the extent of bypassing the algorithm and applying analog-matching techniques), and (2) extensive graphics for displaying information concerning both algorithm operation and transport-system behavior. Chromatic aberration was also included in the mathematical model and in the optimization process. Results presented show this method as yielding better solutions (in terms of resolutions) to the particular problem than those of a standard analog program as well as demonstrating flexibility, in terms of elements, constraints, and chromatic aberration, allowed by user interaction with both the algorithm and the stochastic model. Example of slit usage and a limited comparison of predicted results and actual results obtained with a 600 MeV cyclotron are given.

  1. Hydrogen transport diagnostics by atomic and molecular emission line profiles simultaneously measured for large helical device

    SciTech Connect

    Fujii, K.; Shikama, T.; Hasuo, M.; Goto, M.; Morita, S.

    2013-01-15

    We observe the Balmer-{alpha}, -{beta}, and -{gamma} lines of hydrogen atoms and Q branches of the Fulcher-{alpha} band of hydrogen molecules simultaneously with their polarization resolved for large helical device. From the fit including the line splits and the polarization dependences by the Zeeman effect, the emission locations, intensities, and the temperatures of the atoms and molecules are determined. The emission locations of the hydrogen atoms are determined outside but close to the last closed flux surface (LCFS). The results are consistent with a previous work (Phys. Plasmas 12, 042501 (2005)). On the other hand, the emission locations of the molecules are determined to be in the divertor legs, which is farer from those of the atoms. The kinetic energy of the atoms is 1 {approx} 20 eV, while the rotational temperature of molecules is {approx}0.04 eV. Additionally, substantial wings, which originate from high velocity atoms and are not reproduced by the conventional spectral analysis, are observed in the Balmer line profiles. We develop a one-dimensional model to simulate the transport of the atoms and molecules. The model reproduces the differences of the emission locations of the atoms and molecules when their initial temperatures are assumed to be 3 eV and 0.04 eV, respectively. From the model, the wings of the Balmer-{alpha} line is attributed to the high velocity atoms exist deep inside the LCFS, which are generated by the charge exchange collisions with hot protons there.

  2. Monte Carlo N-Particle Transport Code System Including MCNP6.1, MCNP5-1.60, MCNPX-2.7.0 and Data Libraries.

    SciTech Connect

    GOORLEY, TIM

    2013-07-16

    Version 01 US DOE 10CFR810 Jurisdiction. MCNP6™ is a general-purpose, continuous-energy, generalized-geometry, time-dependent, Monte Carlo radiation-transport code designed to track many particle types over broad ranges of energies. MCNP6 represents the culmination of a multi-year effort to merge the MCNP5™ [X-503] and MCNPX™ [PEL11] codes into a single product comprising all features of both. For those familiar with previous versions of MCNP, you will discover the code has been expanded to handle a multitude of particles and to include model physics options for energies above the cross-section table range, a material burnup feature, and delayed particle production. Expanded and/or new tally, source, and variance-reduction options are available to the user as well as an improved plotting capability. The capability to calculate keff eigenvalues for fissile systems remains a standard feature. Although MCNP6 is simply and accurately described as the merger of MCNP5 and MCNPX capabilities, the result is much more than the sum of these two computer codes. MCNP6 is the result of five years of effort by the MCNP5 and MCNPX code development teams. These groups of people, residing in the Los Alamos National Laboratory's (LANL) X Computational Physics Division, Monte Carlo Codes Group (XCP-3), and Nuclear Engineering and Nonproliferation Division, Systems Design and Analysis Group (NEN-5, formerly D-5), have combined their code development efforts to produce the next evolution of MCNP. While maintenance and bug fixes will continue for MCNP5 v.1.60 and MCNPX v.2.7.0 for upcoming years, new code development capabilities will be developed and released only in MCNP6. In fact, this initial production release of MCNP6 (v. 1.0) contains 16 new features not previously found in either code. These new features include (among others) the abilities to import unstructured mesh geometries from the finite element code Abaqus, to transport photons down to 1.0 eV, to model complete

  3. Monte Carlo N-Particle Transport Code System Including MCNP6.1, MCNP5-1.60, MCNPX-2.7.0 and Data Libraries.

    SciTech Connect

    GOORLEY, TIM

    2013-07-16

    Version 00 US DOE 10CFR810 Jurisdiction. MCNP6™ is a general-purpose, continuous-energy, generalized-geometry, time-dependent, Monte Carlo radiation-transport code designed to track many particle types over broad ranges of energies. MCNP6 represents the culmination of a multi-year effort to merge the MCNP5™ [X-503] and MCNPX™ [PEL11] codes into a single product comprising all features of both. For those familiar with previous versions of MCNP, you will discover the code has been expanded to handle a multitude of particles and to include model physics options for energies above the cross-section table range, a material burnup feature, and delayed particle production. Expanded and/or new tally, source, and variance-reduction options are available to the user as well as an improved plotting capability. The capability to calculate keff eigenvalues for fissile systems remains a standard feature. Although MCNP6 is simply and accurately described as the merger of MCNP5 and MCNPX capabilities, the result is much more than the sum of these two computer codes. MCNP6 is the result of five years of effort by the MCNP5 and MCNPX code development teams. These groups of people, residing in the Los Alamos National Laboratory's (LANL) X Computational Physics Division, Monte Carlo Codes Group (XCP-3), and Nuclear Engineering and Nonproliferation Division, Systems Design and Analysis Group (NEN-5, formerly D-5), have combined their code development efforts to produce the next evolution of MCNP. While maintenance and bug fixes will continue for MCNP5 v.1.60 and MCNPX v.2.7.0 for upcoming years, new code development capabilities will be developed and released only in MCNP6. In fact, this initial production release of MCNP6 (v. 1.0) contains 16 new features not previously found in either code. These new features include (among others) the abilities to import unstructured mesh geometries from the finite element code Abaqus, to transport photons down to 1.0 eV, to model complete

  4. Quantitative assessment of direct and indirect landslide risk along transportation lines in southern India

    NASA Astrophysics Data System (ADS)

    Jaiswal, P.; van Westen, C. J.; Jetten, V.

    2010-06-01

    A quantitative approach for landslide risk assessment along transportation lines is presented and applied to a road and a railway alignment in the Nilgiri hills in southern India. The method allows estimating direct risk affecting the alignments, vehicles and people, and indirect risk resulting from the disruption of economic activities. The data required for the risk estimation were obtained from historical records. A total of 901 landslides were catalogued initiating from cut slopes along the railway and road alignment. The landslides were grouped into three magnitude classes based on the landslide type, volume, scar depth, run-out distance, etc and their probability of occurrence was obtained using frequency-volume distribution. Hazard, for a given return period, expressed as the number of landslides of a given magnitude class per kilometre of cut slopes, was obtained using Gumbel distribution and probability of landslide magnitude. In total 18 specific hazard scenarios were generated using the three magnitude classes and six return periods (1, 3, 5, 15, 25, and 50 years). The assessment of the vulnerability of the road and railway line was based on damage records whereas the vulnerability of different types of vehicles and people was subjectively assessed based on limited historic incidents. Direct specific loss for the alignments (railway line and road), vehicles (train, bus, lorry, car and motorbike) was expressed in monetary value (US), and direct specific loss of life of commuters was expressed in annual probability of death. Indirect specific loss (US) derived from the traffic interruption was evaluated considering alternative driving routes, and includes losses resulting from additional fuel consumption, additional travel cost, loss of income to the local business, and loss of revenue to the railway department. The results indicate that the total loss, including both direct and indirect loss, from 1 to 50 years return period, varies from US 90 840 to US

  5. Identification of transport pathways for citric acid cycle intermediates in the human colon carcinoma cell line, Caco-2.

    PubMed

    Weerachayaphorn, Jittima; Pajor, Ana M

    2008-04-01

    Citric acid cycle intermediates are absorbed from the gastrointestinal tract through carrier-mediated mechanisms, although the transport pathways have not been clearly identified. This study examines the transport of citric acid cycle intermediates in the Caco-2 human colon carcinoma cell line, often used as a model of small intestine. Inulin was used as an extracellular volume marker instead of mannitol since the apparent volume measured with mannitol changed with time. The results show that Caco-2 cells contain at least three distinct transporters, including the Na+-dependent di- and tricarboxylate transporters, NaDC1 and NaCT, and one or more sodium-independent pathways, possibly involving organic anion transporters. Succinate transport is mediated mostly by Na+-dependent pathways, predominantly by NaDC1, but with some contribution by NaCT. RT-PCR and functional characteristics verified the expression of these transporters in Caco-2 cells. In contrast, citrate transport in Caco-2 cells occurs by a combination of Na+-independent pathways, possibly mediated by an organic anion transporter, and Na+-dependent mechanisms. The non-metabolizable dicarboxylate, methylsuccinate, is also transported by a combination of Na+-dependent and -independent pathways. In conclusion, we find that multiple pathways are involved in the transport of di- and tricarboxylates by Caco-2 cells. Since many of these pathways are not found in human intestine, this model may be best suited for studying Na+-dependent transport of succinate by NaDC1.

  6. Radial transport of radiation belt electrons in kinetic field-line resonances

    NASA Astrophysics Data System (ADS)

    Chaston, C. C.; Bonnell, J. W.; Wygant, J. R.; Reeves, G. D.; Baker, D. N.; Melrose, D. B.; Cairns, Iver H.

    2017-08-01

    A representative case study from the Van Allen Probes during a geomagnetic storm recovery phase reveals enhanced electron fluxes at intermediate pitch angles over energies from 100 keV to 5 MeV coincident with broadband low-frequency electromagnetic waves. The statistical properties of these waves are used to build a model for radial diffusion via drift-bounce resonances in kinetic Alfvén eigenmodes/kinetic field-line resonances. Estimated diffusion coefficients indicate timescales for radial transport on the order of hours in storm time events at energies from <100 keV to MeVs over equatorial pitch angles from the edge of the loss cone to nearly perpendicular to the geomagnetic field. The correlation of kinetic resonances with electron depletions and enhancements during storm main phase and recovery, and the rapid diffusion these waves drive, suggests that they may modulate the outer radiation belt.

  7. Quality control and patient dosimetry in digital radiology. On line system: new features and transportability.

    PubMed

    Vano, E; Ten, J I; Fernandez, J M; Prieto, C; Ordiales, J M; Martinez, D

    2008-01-01

    New features have been added to a system (QCONLINE) for auditing patient dosimetric and technical parameters 'on line', working on a digital radiology department and using the information contained in the DICOM header of some modalities. The audit of other parameters than patient doses have been included, setting alarm conditions to alert on malfunction of the X-ray system or bad operation modes, in addition to the evaluation of patient doses. A new module to analyse, collect and process the relevant information transferred by the modality performed procedure step (MPPS) service has been launched. Several examples with the exploitation of the new features are presented. The transportability of the system has been tested in two remote hospitals during several months. The new MPPS module has demonstrated to be a good tool to complement the information existing in the DICOM header. The system allows to help in the optimisation of digital radiology departments managing patient dosimetry and procedure data in real time.

  8. Chloride transport in a human submandibular gland cell line studied by X-ray microanalysis.

    PubMed

    Roomans, G M

    1998-08-01

    Ion transport properties of the human submandibular gland cell line A253 were investigated by X-ray microanalysis. The cells were grown on ultrathin plastic films on titanium grids. After the experiment, where the cells were exposed to various agonists and inhibitors, the specimens were briefly rinsed in distilled water, frozen, and freeze-dried. The elemental composition of the cultured cells most closely resembled that of striated duct cells. Beta-adrenergic stimulation caused a small decrease in the cellular Cl- and K+ concentration, but cholinergic stimulation had no effect. Also stimulation with cAMP caused a decrease in Cl- and K+; this decrease could be inhibited by the chloride channel blocker NPPB. Loss of Cl- and K+ could also be elicited by exposure to a hypotonic solution. The results suggest that there may be several types of chloride channel present in A253 cells.

  9. Characterization of multidrug transporter-mediated efflux of avermectins in human and mouse neuroblastoma cell lines.

    PubMed

    Dalzell, Abigail M; Mistry, Pratibha; Wright, Jayne; Williams, Faith M; Brown, Colin D A

    2015-06-15

    ABC transporters play an important role in the disposition of avermectins in several animal species. In this study the interactions of three key avermectins, abamectin, emamectin and ivermectin, with human and mouse homologues of MDR1 (ABCB1/Abcb1a) and MRP (ABCC/Abcc), transporters endogenously expressed by human SH-SY5Y and mouse N2a neuroblastoma cells were investigated. In both cell lines, retention of the fluorescent dye H33342 was found to be significantly increased in the presence of avermectins and cyclosporin A. These effects were shown to be unresponsive to the BCRP inhibitor Ko-143 and therefore MDR1/Mdr1-dependent. Avermectins inhibited MDR1/Mdr1a-mediated H33342 dye efflux, with apparent Ki values of 0.24±0.08 and 0.18±0.02μM (ivermectin); 0.60±0.07 and 0.56±0.02μM (emamectin) and 0.95±0.08 and 0.77±0.25μM (abamectin) in SH-SY5Y and N2a cells, respectively. There were some apparent affinity differences for MDR1 and Mdr1a within each cell line (affinity for ivermectin>emamectin≥abamectin, P<0.05 by One-Way ANOVA), but importantly, the Ki values for individual avermectins for human MDR1 or mouse Mdr1a were not significantly different. MK571-sensitive retention of GSMF confirmed the expression of MRP/Mrp efflux transporters in both cell lines. Avermectins inhibited MRP/Mrp-mediated dye efflux with IC50 values of 1.58±0.51 and 1.94±0.72μM (ivermectin); 1.87±0.57 and 2.74±1.01μM (emamectin) and 2.25±0.01 and 1.68±0.63μM (abamectin) in SH-SY5Y and N2a cells, respectively. There were no significant differences in IC50 values between individual avermectins or between human MRP and mouse Mrp. Kinetic data for endogenous human MDR1/MRP isoforms in SH-SY5Y cells and mouse Mdr1a/b/Mrp isoforms in N2a cells are comparable for the selected avermectins. All are effluxed at concentrations well above 0.05-0.1μM ivermectin detected in plasma (Ottesen and Campbell, 1994; Ottesen and Campbell, 1994) This is an important finding in the light of

  10. A new medium energy beam transport line for the proton injector of AGS-RHIC

    SciTech Connect

    Okamura, M.; Briscoe, B.; Fite, J.; LoDestro, V.; Raparia, D.; Ritter, J.; Hayashizaki, N.

    2010-09-12

    In Brookhaven National Laboratory (BNL), a 750 keV medium energy beam transport line between the 201 MHz 750 keV proton RFQ and the 200 MeV Alvarez DTL is being modified to get a better transmission of the beam. Within a tight space, high field gradient quadrupoles (65 Tm) and newly designed steering magnets (6.5 mm in length) will be installed considering the cross-talk effects. Also a new half wave length 200 MHz buncher is being prepared. The beam commissioning will be done in this year. To enhance the performance of the proton linacs, the MEBT is being modified. New quadrupole magnets, steering magnets and a half wave length buncher as shown in Figure 7 will be installed and be commissioned soon.

  11. Identification of transporters associated with Etoposide sensitivity of stomach cancer cell lines and methotrexate sensitivity of breast cancer cell lines by quantitative targeted absolute proteomics.

    PubMed

    Obuchi, Wataru; Ohtsuki, Sumio; Uchida, Yasuo; Ohmine, Ken; Yamori, Takao; Terasaki, Tetsuya

    2013-02-01

    Membrane transporter proteins may influence the sensitivity of cancer cells to anticancer drugs that can be recognized as substrates. The purpose of this study was to identify proteins that play a key role in the drug sensitivity of stomach and breast cancer cell lines by measuring the absolute protein expression levels of multiple transporters and other membrane proteins and examining their correlation to drug sensitivity. Absolute protein expression levels of 90 membrane proteins were examined by quantitative targeted absolute proteomics using liquid chromatography-linked tandem mass spectrometry. Among them, 11 and 14 membrane proteins, including transporters, were present in quantifiable amounts in membrane fraction of stomach cancer and breast cancer cell lines, respectively. In stomach cancer cell lines, the protein expression level of multidrug resistance-associated protein 1 (MRP1) was inversely correlated with etoposide sensitivity. MK571, an MRP inhibitor, increased both the cell-to-medium ratio of etoposide and the etoposide sensitivity of MRP1-expressing stomach cancer cell lines. In breast cancer cell lines, the protein expression level of reduced folate carrier 1 (RFC1) was directly correlated with methotrexate (MTX) sensitivity. Initial uptake rate and steady-state cell-to-medium ratio of [(3)H]MTX were correlated with both RFC1 expression level and MTX sensitivity. These results suggest that MRP1 modulates the etoposide sensitivity of stomach cancer cell lines and RFC1 modulates the MTX sensitivity of breast cancer cell lines. Our results indicate that absolute quantification of multiple membrane proteins could be a useful strategy for identification of candidate proteins involved in drug sensitivity.

  12. Orbit error correction on the high energy beam transport line at the KHIMA accelerator system

    NASA Astrophysics Data System (ADS)

    Park, Chawon; Yim, Heejoong; Hahn, Garam; An, Dong Hyun

    2016-09-01

    For the purpose of treatment of various cancers and medical research, a synchrotron based medical machine has been developed under the Korea Heavy Ion Medical Accelerator (KHIMA) project and is scheduled for use to treat patient at the beginning of 2018. The KHIMA synchrotron is designed to accelerate and extract carbon ion (proton) beams with various energies from 110 to 430 MeV/u (60 to 230 MeV). Studies on the lattice design and beam optics for the High Energy Beam Transport (HEBT) line at the KHIMA accelerator system have been carried out using the WinAgile and the MAD-X codes. Because magnetic field errors and misalignments introduce deviations from the design parameters, these error sources should be treated explicitly, and the sensitivity of the machine's lattice to different individual error sources should be considered. Various types of errors, both static and dynamic, have been taken into account and have been consequentially corrected with a dedicated correction algorithm by using the MAD-X program. Based on the error analysis, the optimized correction setup is decided, and the specifications for the correcting magnets of the HEBT lines are determined.

  13. General Purpose Monte Carlo Codes for Neutron and Photon Transport Calculations based on Continuous Energy and Multigroup Methods.

    SciTech Connect

    NAGAYA, YASANOBU

    2008-02-29

    Version 00 (1) Problems to be solved: MVP/GMVP II can solve eigenvalue and fixed-source problems. The multigroup code GMVP can solve forward and adjoint problems for neutron, photon and neutron-photon coupled transport. The continuous-energy code MVP can solve only the forward problems. Both codes can also perform time-dependent calculations. (2) Geometry description: MVP/GMVP employs combinatorial geometry to describe the calculation geometry. It describes spatial regions by the combination of the 3-dimensional objects (BODIes). Currently, the following objects (BODIes) can be used. - BODIes with linear surfaces : half space, parallelepiped, right parallelepiped, wedge, right hexagonal prism - BODIes with quadratic surface and linear surfaces : cylinder, sphere, truncated right cone, truncated elliptic cone, ellipsoid by rotation, general ellipsoid - Arbitrary quadratic surface and torus The rectangular and hexagonal lattice geometry can be used to describe the repeated geometry. Furthermore, the statistical geometry model is available to treat coated fuel particles or pebbles for high temperature reactors. (3) Particle sources: The various forms of energy-, angle-, space- and time-dependent distribution functions can be specified. See Abstract for more detail.

  14. Monte Carlo transport model comparison with 1A GeV accelerated iron experiment: heavy-ion shielding evaluation of NASA space flight-crew foodstuff

    NASA Technical Reports Server (NTRS)

    Stephens, D. L. Jr; Townsend, L. W.; Miller, J.; Zeitlin, C.; Heilbronn, L.

    2002-01-01

    Deep-space manned flight as a reality depends on a viable solution to the radiation problem. Both acute and chronic radiation health threats are known to exist, with solar particle events as an example of the former and galactic cosmic rays (GCR) of the latter. In this experiment Iron ions of 1A GeV are used to simulate GCR and to determine the secondary radiation field created as the GCR-like particles interact with a thick target. A NASA prepared food pantry locker was subjected to the iron beam and the secondary fluence recorded. A modified version of the Monte Carlo heavy ion transport code developed by Zeitlin at LBNL is compared with experimental fluence. The foodstuff is modeled as mixed nuts as defined by the 71st edition of the Chemical Rubber Company (CRC) Handbook of Physics and Chemistry. The results indicate a good agreement between the experimental data and the model. The agreement between model and experiment is determined using a linear fit to ordered pairs of data. The intercept is forced to zero. The slope fit is 0.825 and the R2 value is 0.429 over the resolved fluence region. The removal of an outlier, Z=14, gives values of 0.888 and 0.705 for slope and R2 respectively. c2002 COSPAR. Published by Elsevier Science Ltd. All rights reserved.

  15. Intercomparison of Monte Carlo radiation transport codes to model TEPC response in low-energy neutron and gamma-ray fields.

    PubMed

    Ali, F; Waker, A J; Waller, E J

    2014-10-01

    Tissue-equivalent proportional counters (TEPC) can potentially be used as a portable and personal dosemeter in mixed neutron and gamma-ray fields, but what hinders this use is their typically large physical size. To formulate compact TEPC designs, the use of a Monte Carlo transport code is necessary to predict the performance of compact designs in these fields. To perform this modelling, three candidate codes were assessed: MCNPX 2.7.E, FLUKA 2011.2 and PHITS 2.24. In each code, benchmark simulations were performed involving the irradiation of a 5-in. TEPC with monoenergetic neutron fields and a 4-in. wall-less TEPC with monoenergetic gamma-ray fields. The frequency and dose mean lineal energies and dose distributions calculated from each code were compared with experimentally determined data. For the neutron benchmark simulations, PHITS produces data closest to the experimental values and for the gamma-ray benchmark simulations, FLUKA yields data closest to the experimentally determined quantities.

  16. Monte Carlo transport model comparison with 1A GeV accelerated iron experiment: heavy-ion shielding evaluation of NASA space flight-crew foodstuff

    NASA Technical Reports Server (NTRS)

    Stephens, D. L. Jr; Townsend, L. W.; Miller, J.; Zeitlin, C.; Heilbronn, L.

    2002-01-01

    Deep-space manned flight as a reality depends on a viable solution to the radiation problem. Both acute and chronic radiation health threats are known to exist, with solar particle events as an example of the former and galactic cosmic rays (GCR) of the latter. In this experiment Iron ions of 1A GeV are used to simulate GCR and to determine the secondary radiation field created as the GCR-like particles interact with a thick target. A NASA prepared food pantry locker was subjected to the iron beam and the secondary fluence recorded. A modified version of the Monte Carlo heavy ion transport code developed by Zeitlin at LBNL is compared with experimental fluence. The foodstuff is modeled as mixed nuts as defined by the 71st edition of the Chemical Rubber Company (CRC) Handbook of Physics and Chemistry. The results indicate a good agreement between the experimental data and the model. The agreement between model and experiment is determined using a linear fit to ordered pairs of data. The intercept is forced to zero. The slope fit is 0.825 and the R2 value is 0.429 over the resolved fluence region. The removal of an outlier, Z=14, gives values of 0.888 and 0.705 for slope and R2 respectively. c2002 COSPAR. Published by Elsevier Science Ltd. All rights reserved.

  17. Geochemical Characterization Using Geophysical Data and Markov Chain Monte Carlo Methods: A Case Study at the South Oyster Bacterial Transport Site in Virginia

    SciTech Connect

    Chen, Jinsong; Hubbard, Susan; Rubin, Yoram; Murray, Christopher J.; Roden, Eric E.; Majer, Ernest L.

    2004-12-22

    The paper demonstrates the use of ground-penetrating radar (GPR) tomographic data for estimating extractable Fe(II) and Fe(III) concentrations using a Markov chain Monte Carlo (MCMC) approach, based on data collected at the DOE South Oyster Bacterial Transport Site in Virginia. Analysis of multidimensional data including physical, geophysical, geochemical, and hydrogeological measurements collected at the site shows that GPR attenuation and lithofacies are most informative for the estimation. A statistical model is developed for integrating the GPR attenuation and lithofacies data. In the model, lithofacies is considered as a spatially correlated random variable and petrophysical models for linking GPR attenuation to geochemical parameters were derived from data at and near boreholes. Extractable Fe(II) and Fe(III) concentrations at each pixel between boreholes are estimated by conditioning to the co-located GPR data and the lithofacies measurements along boreholes through spatial correlation. Cross-validation results show that geophysical data, constrained by lithofacies, provided information about extractable Fe(II) and Fe(III) concentration in a minimally invasive manner and with a resolution unparalleled by other geochemical characterization methods. The developed model is effective and flexible, and should be applicable for estimating other geochemical parameters at other sites.

  18. Monte Carlo transport model comparison with 1A GeV accelerated iron experiment: heavy-ion shielding evaluation of NASA space flight-crew foodstuff

    NASA Astrophysics Data System (ADS)

    Stephens, D. L.; Townsend, L. W.; Miller, J.; Zeitlin, C.; Heilbronn, L.

    Deep-space manned flight as a reality depends on a viable solution to the radiation problem. Both acute and chronic radiation health threats are known to exist, with solar particle events as an example of the former and galactic cosmic rays (GCR) of the latter. In this experiment Iron ions of 1A GeV are used to simulate GCR and to determine the secondary radiation field created as the GCR-like particles interact with a thick target. A NASA prepared food pantry locker was subjected to the iron beam and the secondary fluence recorded. A modified version of the Monte Carlo heavy ion transport code developed by Zeitlin at LBNL is compared with experimental fluence. The foodstuff is modeled as mixed nuts as defined by the 71 st edition of the Chemical Rubber Company (CRC) Handbook of Physics and Chemistry. The results indicate a good agreement between the experimental data and the model. The agreement between model and experiment is determined using a linear fit to ordered pairs of data. The intercept is forced to zero. The slope fit is 0.825 and the R 2 value is 0.429 over the resolved fluence region. The removal of an outlier, Z=14, gives values of 0.888 and 0.705 for slope and R 2 respectively.

  19. Efficient evaluation of small failure probability in high-dimensional groundwater contaminant transport modeling via a two-stage Monte Carlo method

    NASA Astrophysics Data System (ADS)

    Zhang, Jiangjiang; Li, Weixuan; Lin, Guang; Zeng, Lingzao; Wu, Laosheng

    2017-03-01

    In decision-making for groundwater management and contamination remediation, it is important to accurately evaluate the probability of the occurrence of a failure event. For small failure probability analysis, a large number of model evaluations are needed in the Monte Carlo (MC) simulation, which is impractical for CPU-demanding models. One approach to alleviate the computational cost caused by the model evaluations is to construct a computationally inexpensive surrogate model instead. However, using a surrogate approximation can cause an extra error in the failure probability analysis. Moreover, constructing accurate surrogates is challenging for high-dimensional models, i.e., models containing many uncertain input parameters. To address these issues, we propose an efficient two-stage MC approach for small failure probability analysis in high-dimensional groundwater contaminant transport modeling. In the first stage, a low-dimensional representation of the original high-dimensional model is sought with Karhunen-Loève expansion and sliced inverse regression jointly, which allows for the easy construction of a surrogate with polynomial chaos expansion. Then a surrogate-based MC simulation is implemented. In the second stage, the small number of samples that are close to the failure boundary are re-evaluated with the original model, which corrects the bias introduced by the surrogate approximation. The proposed approach is tested with a numerical case study and is shown to be 100 times faster than the traditional MC approach in achieving the same level of estimation accuracy.

  20. Comparison of a 3-D multi-group SN particle transport code with Monte Carlo for intracavitary brachytherapy of the cervix uteri.

    PubMed

    Gifford, Kent A; Wareing, Todd A; Failla, Gregory; Horton, John L; Eifel, Patricia J; Mourtada, Firas

    2009-12-03

    A patient dose distribution was calculated by a 3D multi-group S N particle transport code for intracavitary brachytherapy of the cervix uteri and compared to previously published Monte Carlo results. A Cs-137 LDR intracavitary brachytherapy CT data set was chosen from our clinical database. MCNPX version 2.5.c, was used to calculate the dose distribution. A 3D multi-group S N particle transport code, Attila version 6.1.1 was used to simulate the same patient. Each patient applicator was built in SolidWorks, a mechanical design package, and then assembled with a coordinate transformation and rotation for the patient. The SolidWorks exported applicator geometry was imported into Attila for calculation. Dose matrices were overlaid on the patient CT data set. Dose volume histograms and point doses were compared. The MCNPX calculation required 14.8 hours, whereas the Attila calculation required 22.2 minutes on a 1.8 GHz AMD Opteron CPU. Agreement between Attila and MCNPX dose calculations at the ICRU 38 points was within +/- 3%. Calculated doses to the 2 cc and 5 cc volumes of highest dose differed by not more than +/- 1.1% between the two codes. Dose and DVH overlays agreed well qualitatively. Attila can calculate dose accurately and efficiently for this Cs-137 CT-based patient geometry. Our data showed that a three-group cross-section set is adequate for Cs-137 computations. Future work is aimed at implementing an optimized version of Attila for radiotherapy calculations.

  1. SU-F-18C-09: Assessment of OSL Dosimeter Technology in the Validation of a Monte Carlo Radiation Transport Code for CT Dosimetry

    SciTech Connect

    Carver, D; Kost, S; Pickens, D; Price, R; Stabin, M

    2014-06-15

    Purpose: To assess the utility of optically stimulated luminescent (OSL) dosimeter technology in calibrating and validating a Monte Carlo radiation transport code for computed tomography (CT). Methods: Exposure data were taken using both a standard CT 100-mm pencil ionization chamber and a series of 150-mm OSL CT dosimeters. Measurements were made at system isocenter in air as well as in standard 16-cm (head) and 32-cm (body) CTDI phantoms at isocenter and at the 12 o'clock positions. Scans were performed on a Philips Brilliance 64 CT scanner for 100 and 120 kVp at 300 mAs with a nominal beam width of 40 mm. A radiation transport code to simulate the CT scanner conditions was developed using the GEANT4 physics toolkit. The imaging geometry and associated parameters were simulated for each ionization chamber and phantom combination. Simulated absorbed doses were compared to both CTDI{sub 100} values determined from the ion chamber and to CTDI{sub 100} values reported from the OSLs. The dose profiles from each simulation were also compared to the physical OSL dose profiles. Results: CTDI{sub 100} values reported by the ion chamber and OSLs are generally in good agreement (average percent difference of 9%), and provide a suitable way to calibrate doses obtained from simulation to real absorbed doses. Simulated and real CTDI{sub 100} values agree to within 10% or less, and the simulated dose profiles also predict the physical profiles reported by the OSLs. Conclusion: Ionization chambers are generally considered the standard for absolute dose measurements. However, OSL dosimeters may also serve as a useful tool with the significant benefit of also assessing the radiation dose profile. This may offer an advantage to those developing simulations for assessing radiation dosimetry such as verification of spatial dose distribution and beam width.

  2. In vitro transport mechanism of psoralen in a human placental cell line (BeWo cells).

    PubMed

    Guo, Jie; Song, Dianrong; Han, Fang; Zhang, Wei; Wang, Yanan; Wang, Yuhua; Du, Wenxin

    2015-01-01

    The mechanism by which psoralen is transported across the placenta was investigated in the BeWo human placental cell line derived from choriocarcinoma in a transwell assay system using liquid chromatography-mass spectrometry/mass spectrometry detection. Psoralen uptake by BeWo cells increased linearly over the concentration range of 0.01 µM to 100 µM (r (2) = 0.997) and was not saturable. Psoralen uptake by BeWo cells was not affected by temperature (4 °C, room temperature, and 37 °C; p > 0.05). Psoralen transport increased linearly over 180 min (r (2) = 0.988) with 3.08 ± 0.26 %, 5.47 ± 0.21 %, 7.54 ± 0.06 %, 9.40 ± 0.37 %, 11.49 ± 0.31 %, and 12.46 ± 0.61 % transferred from the apical chamber to the basolateral chamber in the transwell assays at 30, 60, 90, 120, 150, and 180 min, respectively. The rate of transport showed the same tendency, increasing linearly from 0.13 ± 0.01 pmol/s to 0.58 ± 0.03 pmol/s over the concentration range of 25 µM to 100 µM (r (2) = 0.989). The apparent permeability coefficient for psoralen (100 µM) was 5.62 ± 0.24 × 10(-6) cm/s and 5.53 ± 0.47 × 10(-6) cm/s before and after treatment with verapamil (100 µM), respectively (p > 0.05). The efflux value for psoralen was approximately 1. These data show that psoralen is well absorbed and crosses the placental barrier via passive diffusion in the BeWo cell line.

  3. Fundamentals of Monte Carlo

    SciTech Connect

    Wollaber, Allan Benton

    2016-06-16

    This is a powerpoint presentation which serves as lecture material for the Parallel Computing summer school. It goes over the fundamentals of the Monte Carlo calculation method. The material is presented according to the following outline: Introduction (background, a simple example: estimating π), Why does this even work? (The Law of Large Numbers, The Central Limit Theorem), How to sample (inverse transform sampling, rejection), and An example from particle transport.

  4. High-magnetic-field transport properties and irreversibility line of single crystals (2212) and ceramics of BPSCCO (2223)

    NASA Astrophysics Data System (ADS)

    Pradhan, A. K.; Chen, C.; Wanklyn, B. M.

    1995-02-01

    We have measured the high-magnetic-field (up to 15 T) transport properties of (BiPb) 2Sr 2Ca 1Cu 2O y (BPSCCO) single crystals and (2223) ceramics. We have extracted the melting line of BPSCCO crystals from the measurements of precise I- V curves when the field is applied parallel to the c-axis and shown that the melting line coincides with the irreversibility line measured by the magnetisation technique. This is explained for the case of weak pinning. The depinning line was found to be 10 to 12 K above the melting line. The observed hump in the magnetoresistance curve above 2 T predicts the depinning of flux from the weak pinning centres when the temperature approaches the depinning temperature. The basic behavior of ceramic BPSCCO, although having a higher Tc, is similar to its single crystal analogue with (2212) phase except for the enhanced depinning line.

  5. Pre-conditioned backward Monte Carlo solutions to radiative transport in planetary atmospheres. Fundamentals: Sampling of propagation directions in polarising media

    NASA Astrophysics Data System (ADS)

    García Muñoz, A.; Mills, F. P.

    2015-01-01

    Context. The interpretation of polarised radiation emerging from a planetary atmosphere must rely on solutions to the vector radiative transport equation (VRTE). Monte Carlo integration of the VRTE is a valuable approach for its flexible treatment of complex viewing and/or illumination geometries, and it can intuitively incorporate elaborate physics. Aims: We present a novel pre-conditioned backward Monte Carlo (PBMC) algorithm for solving the VRTE and apply it to planetary atmospheres irradiated from above. As classical BMC methods, our PBMC algorithm builds the solution by simulating the photon trajectories from the detector towards the radiation source, i.e. in the reverse order of the actual photon displacements. Methods: We show that the neglect of polarisation in the sampling of photon propagation directions in classical BMC algorithms leads to unstable and biased solutions for conservative, optically-thick, strongly polarising media such as Rayleigh atmospheres. The numerical difficulty is avoided by pre-conditioning the scattering matrix with information from the scattering matrices of prior (in the BMC integration order) photon collisions. Pre-conditioning introduces a sense of history in the photon polarisation states through the simulated trajectories. Results: The PBMC algorithm is robust, and its accuracy is extensively demonstrated via comparisons with examples drawn from the literature for scattering in diverse media. Since the convergence rate for MC integration is independent of the integral's dimension, the scheme is a valuable option for estimating the disk-integrated signal of stellar radiation reflected from planets. Such a tool is relevant in the prospective investigation of exoplanetary phase curves. We lay out two frameworks for disk integration and, as an application, explore the impact of atmospheric stratification on planetary phase curves for large star-planet-observer phase angles. By construction, backward integration provides a better

  6. Monte Carlo methods on advanced computer architectures

    SciTech Connect

    Martin, W.R.

    1991-12-31

    Monte Carlo methods describe a wide class of computational methods that utilize random numbers to perform a statistical simulation of a physical problem, which itself need not be a stochastic process. For example, Monte Carlo can be used to evaluate definite integrals, which are not stochastic processes, or may be used to simulate the transport of electrons in a space vehicle, which is a stochastic process. The name Monte Carlo came about during the Manhattan Project to describe the new mathematical methods being developed which had some similarity to the games of chance played in the casinos of Monte Carlo. Particle transport Monte Carlo is just one application of Monte Carlo methods, and will be the subject of this review paper. Other applications of Monte Carlo, such as reliability studies, classical queueing theory, molecular structure, the study of phase transitions, or quantum chromodynamics calculations for basic research in particle physics, are not included in this review. The reference by Kalos is an introduction to general Monte Carlo methods and references to other applications of Monte Carlo can be found in this excellent book. For the remainder of this paper, the term Monte Carlo will be synonymous to particle transport Monte Carlo, unless otherwise noted. 60 refs., 14 figs., 4 tabs.

  7. Functional Characterization Of Peptide Transporters In MDCKII -MDR1 Cell line As A Model For Oral Absorption Studies

    PubMed Central

    Agarwal, Sheetal; Jain, Ritesh; Pal, Dhananjay; K.Mitra, Ashim

    2007-01-01

    MDCKII-MDR1 cell line has been extensively selected as a model to study P-gp-mediated drug efflux. Recently, investigators have employed this cell line for studying influx of peptide prodrug derivatives of parent compounds which are P-gp substrates. Therefore, the objective of this study is to functionally characterize the peptide mediated uptake and transport of [3H] Glycylsarcosine ([3H] Gly-Sar), a model peptide substrate across MDCKII-MDR1 cells. [3H] Gly-Sar uptake from apical (AP) and basolateral (BL) membranes was found to be time dependent and saturable. Michaelis-Menten (Km) constants of [3H] Gly-Sar uptake across the AP and BL directions in MDCKII-MDR1 cell line were found to be 457 ± 37 μM and 464 ± 85 μM respectively. Vmax values in AP and BL directions for the peptide transporters in MDCKII-MDR1 cell line were calculated to be 0.035 ± 0.001 and 0.35 ± 0.034 pmol/min/mg protein respectively. Uptake of [3H] Gly-Sar was significantly inhibited in the presence of aminocephalosporins and ACE-Inhibitors, known substrates for peptide transporters in both the AP and BL directions. Permeability of [3H] Gly-Sar in the BL direction was maximal at pH 4 as compared to pH 5, 6 and 7.4 whereas such permeability in the AP direction was optimal at pH 7.4. Transepithelial transport of [3H] Gly-Sar in the AP-BL direction was significantly lower than from BL-AP direction at all observed pHs. No statistical difference was observed in the transepithelial permeability of [3H] Gly-Sar across both AP and BL directions over 4–10 days of growth period. The present study indicates that peptide transporters are effectively involved in the bidirectional transport of Gly-Sar across MDCKII-MDR1 cell line; the BL peptide transporter can transport Gly-Sar at a greater rate as compared to the AP peptide transporter. Results from these studies suggest the application of MDCKII-MDR1 cell line as a rapid effective tool to study peptide mediated influx of compounds that may be

  8. The inhibitory effects of fluoroquinolones on L-carnitine transport in placental cell line BeWo.

    PubMed

    Hirano, Takeshi; Yasuda, Satoru; Osaka, Yuki; Asari, Masaru; Kobayashi, Masaki; Itagaki, Shirou; Iseki, Ken

    2008-03-03

    L-Carnitine plays an important role in lipid metabolism by facilitating the transport of long-chain fatty acids across the mitochondrial inner membrane followed by fatty acid beta-oxidation. It is known that members of the OCTN family play an important role in L-carnitine transport in the placenta. Investigation of drug-drug or drug-nutrient interaction in the placenta is important for establishment of safety drug medication during pregnancy. The aim of this study was to determine the effects of fluoroquinolones, inhibitors of OCTN2, on L-carnitine transport in the placenta which is known to have a high expression level of OCTN2. We investigated the inhibitory effect of five fluoroquinolones, ciprofloxacin (CPFX), gatifloxacin (GFLX), ofloxacin (OFLX), levofloxacin (LVFX) and grepafloxacin (GPFX), on L-carnitine transport mediated by OCTN2 in placental cell line BeWo cells. We found that all of the fluoroquinolones inhibited L-carnitine transport, GPFX being the strongest inhibitor. We also found that the inhibitory effects of LVFX and GPFX depended on their existence ratio of zwitterionic forms as, we reported previously. Furthermore, we elucidated the LVFX transport mechanism in BeWo cells. LVFX was transported actively by transporters. However, we found that LVFX transport was Na+-independent and l-carnitine had no inhibitory effect on LVFX transport, suggesting that LVFX acts as inhibitor of OCTN2, not as a substrate for OCTN2.

  9. Monte Carlo investigation of charge-transport effects on energy resolution and detection efficiency of pixelated CZT detectors for SPECT/PET applications.

    PubMed

    Myronakis, Marios E; Darambara, Dimitra G

    2011-01-01

    Semiconductor detectors are increasingly considered as alternatives to scintillation crystals for nuclear imaging applications such as positron emission tomography (PET) or single photon emission computed tomography (SPECT). One of the most prominent detector materials is cadmium zinc telluride (CZT), which is currently used in several application-specific nuclear imaging systems. In this work, the charge-transport effects in pixelated CZT detectors in relation to detector pixel size and thickness are investigated for pixels sizes from 0.4 up to 1.6 mm. The determination of an optimum pixel size and thickness for use with photon energies of 140 and 511 keV, suitable for SPECT and PET studies, is attempted using photon detection efficiency and energy resolution as figures of merit. The Monte Carlo method combined with detailed finite element analysis was utilized to realistically model photon interactions in the detector and the signal generation process. The GEANT4 Application for Tomographic Emission (GATE) toolkit was used for photon irradiation and interaction simulations. The COMSOL MULTIPHYSICS software application was used to create finite element models of the detector that included charge drift, diffusion, trapping, and generation. Data obtained from the two methods were combined to generate accurate signal induction at the detector pixels. The energy resolution was calculated as the full width at half maximum of the energy spectrum photopeak. Photon detection efficiency was also calculated. The effects of charge transport within the detector and photon escape from primary pixel of interaction were investigated; the extent of diffusion to lateral pixels was also assessed. Charge transport and signal induction were affected by the position of a pixel in the detector. Edge and corner pixels were less susceptible to lateral diffusion than pixels located in the inner part of the detector. Higher detection efficiency and increased photon escape from primary

  10. SU-E-T-58: A Novel Monte Carlo Photon Transport Simulation Scheme and Its Application in Cone Beam CT Projection Simulation

    SciTech Connect

    Xu, Y; Tian, Z; Jiang, S; Jia, X; Zhou, L

    2015-06-15

    Purpose: Monte Carlo (MC) simulation is an important tool to solve radiotherapy and medical imaging problems. Low computational efficiency hinders its wide applications. Conventionally, MC is performed in a particle-by -particle fashion. The lack of control on particle trajectory is a main cause of low efficiency in some applications. Take cone beam CT (CBCT) projection simulation as an example, significant amount of computations were wasted on transporting photons that do not reach the detector. To solve this problem, we propose an innovative MC simulation scheme with a path-by-path sampling method. Methods: Consider a photon path starting at the x-ray source. After going through a set of interactions, it ends at the detector. In the proposed scheme, we sampled an entire photon path each time. Metropolis-Hasting algorithm was employed to accept/reject a sampled path based on a calculated acceptance probability, in order to maintain correct relative probabilities among different paths, which are governed by photon transport physics. We developed a package gMMC on GPU with this new scheme implemented. The performance of gMMC was tested in a sample problem of CBCT projection simulation for a homogeneous object. The results were compared to those obtained using gMCDRR, a GPU-based MC tool with the conventional particle-by-particle simulation scheme. Results: Calculated scattered photon signals in gMMC agreed with those from gMCDRR with a relative difference of 3%. It took 3.1 hr. for gMCDRR to simulate 7.8e11 photons and 246.5 sec for gMMC to simulate 1.4e10 paths. Under this setting, both results attained the same ∼2% statistical uncertainty. Hence, a speed-up factor of ∼45.3 was achieved by this new path-by-path simulation scheme, where all the computations were spent on those photons contributing to the detector signal. Conclusion: We innovatively proposed a novel path-by-path simulation scheme that enabled a significant efficiency enhancement for MC particle

  11. Light propagation along the pericardium meridian at human wrist as evidenced by the optical experiment and Monte Carlo method.

    PubMed

    Jiang, Yi-fan; Chen, Chang-shui; Liu, Xiao-mei; Liu, Rong-ting; Liu, Song-hao

    2015-04-01

    To explore the characteristics of light propagation along the Pericardium Meridian and its surrounding areas at human wrist by using optical experiment and Monte Carlo method. An experiment was carried out to obtain the distribution of diffuse light on Pericardium Meridian line and its surrounding areas at the wrist, and then a simplified model based on the anatomical structure was proposed to simulate the light transportation within the same area by using Monte Carlo method. The experimental results showed strong accordance with the Monte Carlo simulation that the light propagation along the Pericardium Meridian had an advantage over its surrounding areas at the wrist. The advantage of light transport along Pericardium Merdian line was related to components and structure of tissue, also the anatomical structure of the area that the Pericardium Meridian line runs.

  12. Expression of thirty-six drug transporter genes in human intestine, liver, kidney, and organotypic cell lines.

    PubMed

    Hilgendorf, Constanze; Ahlin, Gustav; Seithel, Annick; Artursson, Per; Ungell, Anna-Lena; Karlsson, Johan

    2007-08-01

    This study was designed to quantitatively assess the mRNA expression of 36 important drug transporters in human jejunum, colon, liver, and kidney. Expression of these transporters in human organs was compared with expression in commonly used cell lines (Caco-2, HepG2, and Caki-1) originating from these organs to assess their value as in vitro transporter system models, and was also compared with data obtained from the literature on expression in rat tissues to assess species differences. Transporters that were highly expressed in the intestine included HPT1, PEPT1, BCRP, MRP2, and MDR1, whereas, in the liver, OCT1, MRP2, OATP-C, NTCP and BSEP were the main transporters. In the kidney, OAT1 was expressed at the highest levels, followed by OAT3, OAT4, MCT5, MDR1, MRP2, OCT2, and OCTN2. The best agreement between human tissue and the representative cell line was observed for human jejunum and Caco-2 cells. Expression in liver and kidney ortholog cell lines was not correlated with that in the associated tissue. Comparisons with rat transporter gene expression revealed significant species differences. Our results allowed a comprehensive quantitative comparison of drug transporter expression in human intestine, liver, and kidney. We suggest that it would be beneficial for predictive pharmacokinetic research to focus on the most highly expressed transporters. We hope that our comparison of rat and human tissue will help to explain the observed species differences in in vivo models, increase understanding of the impact of active transport processes on pharmacokinetics and distribution, and improve the quality of predictions from animal studies to humans.

  13. Parametric study of transport beam lines for electron beams accelerated by laser-plasma interaction

    SciTech Connect

    Scisciò, M.; Antici, P.; Lancia, L.; Migliorati, M.; Mostacci, A.; Palumbo, L.; Papaphilippou, Y.

    2016-03-07

    In the last decade, laser-plasma acceleration of high-energy electrons has attracted strong attention in different fields. Electrons with maximum energies in the GeV range can be laser-accelerated within a few cm using multi-hundreds terawatt (TW) lasers, yielding to very high beam currents at the source (electron bunches with up to tens-hundreds of pC in a few fs). While initially the challenge was to increase the maximum achievable electron energy, today strong effort is put in the control and usability of these laser-generated beams that still lack of some features in order to be used for applications where currently conventional, radio-frequency (RF) based, electron beam lines represent the most common and efficient solution. Several improvements have been suggested for this purpose, some of them acting directly on the plasma source, some using beam shaping tools located downstream. Concerning the latter, several studies have suggested the use of conventional accelerator magnetic devices (such as quadrupoles and solenoids) as an easy implementable solution when the laser-plasma accelerated beam requires optimization. In this paper, we report on a parametric study related to the transport of electron beams accelerated by laser-plasma interaction, using conventional accelerator elements and tools. We focus on both, high energy electron beams in the GeV range, as produced on petawatt (PW) class laser systems, and on lower energy electron beams in the hundreds of MeV range, as nowadays routinely obtained on commercially available multi-hundred TW laser systems. For both scenarios, our study allows understanding what are the crucial parameters that enable laser-plasma accelerators to compete with conventional ones and allow for a beam transport. We show that suitable working points require a tradeoff-combination between low beam divergence and narrow energy spread.

  14. Parametric study of transport beam lines for electron beams accelerated by laser-plasma interaction

    NASA Astrophysics Data System (ADS)

    Scisciò, M.; Lancia, L.; Migliorati, M.; Mostacci, A.; Palumbo, L.; Papaphilippou, Y.; Antici, P.

    2016-03-01

    In the last decade, laser-plasma acceleration of high-energy electrons has attracted strong attention in different fields. Electrons with maximum energies in the GeV range can be laser-accelerated within a few cm using multi-hundreds terawatt (TW) lasers, yielding to very high beam currents at the source (electron bunches with up to tens-hundreds of pC in a few fs). While initially the challenge was to increase the maximum achievable electron energy, today strong effort is put in the control and usability of these laser-generated beams that still lack of some features in order to be used for applications where currently conventional, radio-frequency (RF) based, electron beam lines represent the most common and efficient solution. Several improvements have been suggested for this purpose, some of them acting directly on the plasma source, some using beam shaping tools located downstream. Concerning the latter, several studies have suggested the use of conventional accelerator magnetic devices (such as quadrupoles and solenoids) as an easy implementable solution when the laser-plasma accelerated beam requires optimization. In this paper, we report on a parametric study related to the transport of electron beams accelerated by laser-plasma interaction, using conventional accelerator elements and tools. We focus on both, high energy electron beams in the GeV range, as produced on petawatt (PW) class laser systems, and on lower energy electron beams in the hundreds of MeV range, as nowadays routinely obtained on commercially available multi-hundred TW laser systems. For both scenarios, our study allows understanding what are the crucial parameters that enable laser-plasma accelerators to compete with conventional ones and allow for a beam transport. We show that suitable working points require a tradeoff-combination between low beam divergence and narrow energy spread.

  15. Beam transport radiation shielding for branch lines 2-ID-B and 2-ID-C

    SciTech Connect

    Feng, Y.P.; Lai, B.; McNulty, I.; Dejus, R.J.; Randall, K.J.; Yun, W.

    1995-08-01

    The x-ray radiation shielding requirements beyond the first optics enclosure have been considered for the beam transport of the 2-ID-B and 2-ID-C branch lines of Sector 2 (SRI-CAT) of the APS. The first three optical components (mirrors) of the 2-ID-B branch are contained within the shielded first optics enclosure. Calculations indicate that scattering of the primary synchrotron beam by beamline components outside the enclosure, such as apertures and monochromators, or by gas particles in case of vacuum failure is within safe limits for this branch. A standard 2.5-inch-diameter stainless steel pipe with 1/16-inch-thick walls provides adequate shielding to reduce the radiation dose equivalent rate to human tissue to below the maximum permissible limit of 0.25 mrem/hr. The 2-ID-C branch requires, between the first optics enclosure where only two mirrors are used and the housing for the third mirror, additional lead shielding (0.75 mm) and a minimum approach distance of 2.6 cm. A direct beam stop consisting of at least 4.5 mm of lead is also required immediately downstream of the third mirror for 2-ID-C. Finally, to stop the direct beam from escaping the experimental station, a beam stop consisting of at least 4-mm or 2.5-mm steel is required for the 2-ID-B or 2-ID-C branches, respectively. This final requirement can be met by the vacuum chambers used to house the experiments for both branch lines.

  16. Optimization of Monte Carlo particle transport parameters and validation of a novel high throughput experimental setup to measure the biological effects of particle beams.

    PubMed

    Patel, Darshana; Bronk, Lawrence; Guan, Fada; Peeler, Christopher R; Brons, Stephan; Dokic, Ivana; Abdollahi, Amir; Rittmüller, Claudia; Jäkel, Oliver; Grosshans, David; Mohan, Radhe; Titt, Uwe

    2017-09-07

    Accurate modeling of the relative biological effectiveness (RBE) of particle beams requires increased systematic in vitro studies with human cell lines with care towards minimizing uncertainties in biologic assays as well as physical parameters. In this study, we describe a novel high-throughput experimental setup and an optimized parameterization of the Monte Carlo (MC) simulation technique that is universally applicable for accurate determination of RBE of clinical ion beams. Clonogenic cell-survival measurements on a human lung cancer cell line (H460) are presented using proton irradiation. Experiments were performed at the Heidelberg Ion Therapy Center (HIT) with support from the Deutsches Krebsforschungszentrum (DKFZ) in Heidelberg, Germany using a mono-energetic horizontal proton beam. A custom-made variable range selector was designed for the horizontal beam line using the Geant4 MC toolkit. This unique setup enabled a high-throughput clonogenic assay investigation of multiple, well defined dose and linear energy transfer (LETs) per irradiation for human lung cancer cells (H460) cultured in a 96-well plate. Sensitivity studies based on application of different physics lists in conjunction with different electromagnetic constructors and production threshold values to the MC simulations were undertaken for accurate assessment of the calculated dose and the dose-averaged LET (LETd ). These studies were extended to helium and carbon ion beams. Sensitivity analysis of the MC parameterization revealed substantial dependence of the dose and LETd values on both the choice of physics list and the production threshold values. While the dose and LETd calculations using FTFP_BERT_LIV, FTFP_BERT_EMZ, FTFP_BERT_PEN and QGSP_BIC_EMY physics lists agree well with each other for all three ions, they show large differences when compared to the FTFP_BERT physics list with the default electromagnetic constructor. For carbon ions, the dose corresponding to the largest LETd

  17. Monte Carlo simulations of medical imaging modalities

    SciTech Connect

    Estes, G.P.

    1998-09-01

    Because continuous-energy Monte Carlo radiation transport calculations can be nearly exact simulations of physical reality (within data limitations, geometric approximations, transport algorithms, etc.), it follows that one should be able to closely approximate the results of many experiments from first-principles computations. This line of reasoning has led to various MCNP studies that involve simulations of medical imaging modalities and other visualization methods such as radiography, Anger camera, computerized tomography (CT) scans, and SABRINA particle track visualization. It is the intent of this paper to summarize some of these imaging simulations in the hope of stimulating further work, especially as computer power increases. Improved interpretation and prediction of medical images should ultimately lead to enhanced medical treatments. It is also reasonable to assume that such computations could be used to design new or more effective imaging instruments.

  18. Quantum Gibbs ensemble Monte Carlo

    SciTech Connect

    Fantoni, Riccardo; Moroni, Saverio

    2014-09-21

    We present a path integral Monte Carlo method which is the full quantum analogue of the Gibbs ensemble Monte Carlo method of Panagiotopoulos to study the gas-liquid coexistence line of a classical fluid. Unlike previous extensions of Gibbs ensemble Monte Carlo to include quantum effects, our scheme is viable even for systems with strong quantum delocalization in the degenerate regime of temperature. This is demonstrated by an illustrative application to the gas-superfluid transition of {sup 4}He in two dimensions.

  19. Differential expression of several drug transporter genes in HepG2 and Huh-7 cell lines.

    PubMed

    Louisa, Melva; Suyatna, Frans D; Wanandi, Septelia Inawati; Asih, Puji Budi Setia; Syafruddin, Din

    2016-01-01

    Cell culture techniques have many advantages for investigation of drug transport to target organ like liver. HepG2 and Huh-7 are two cell lines available from hepatoma that can be used as a model for hepatic drug transport. The present study is aimed to analyze the expression level of several drug transporter genes in two hepatoma cell lines, HepG2 and Huh-7 and their response to inhibitors. This is an in vitro study using HepG2 and Huh-7 cells. The expression level of the following drug transporter genes was quantified: P-glycoprotein/multidrug resistance protein 1, Organic Anionic Transporter Protein 1B1 (OATP1B1) and Organic Cationic Transporter-1 (OCT1). Ribonucleic acid was extracted from the cells using Tripure isolation reagent, then gene expression level of the transporters is quantified using Applied Biosystems quantitative reverse transcriptase polymerase chain reaction. Verapamil (P-glycoprotein inhibitor), nelfinavir (OATP1B1 inhibitor), quinidine (OCT1 inhibitor) were used to differentiate the inhibitory properties of these agents to the transporter expressions in HepG2 and Huh-7 cells. Huh-7 shows a higher level of P-glycoprotein, OATP1B1 and OCT1 expressions compared with those of HepG2. Verapamil reduces the expressions of P-glycoprotein in HepG2 and Huh-7; nelfinavir reduces the expression of OATP1B1 in HepG2 and Huh-7; while quinidine reduces the OCT1 gene expressions in HepG2, but not in Huh-7 cells. This study indicates that HepG2 might be a more suitable in vitro model than Huh-7 to study drug transport in hepatocytes involving drug transporters.

  20. Fun at Antarctic grounding lines: Ice-shelf channels and sediment transport

    NASA Astrophysics Data System (ADS)

    Drews, Reinhard; Mayer, Christoph; Eisen, Olaf; Helm, Veit; Ehlers, Todd A.; Pattyn, Frank; Berger, Sophie; Favier, Lionel; Hewitt, Ian H.; Ng, Felix; Fürst, Johannes J.; Gillet-Chaulet, Fabien; Bergeot, Nicolas; Matsuoka, Kenichi

    2017-04-01

    Meltwater beneath the polar ice sheets drains, in part, through subglacial conduits. Landforms created by such drainages are abundant in areas formerly covered by ice sheets during the last glacial maximum. However, observations of subglacial conduit dynamics under a contemporary ice sheet are lacking. We present results from ice-penetrating radar to infer the existence of subglacial conduits upstream of the grounding line of Roi Baudouin Ice Shelf, Antarctica. The conduits are aligned with ice-shelf channels, and underlain by esker ridges formed from sediment deposition due to reduced water outflow speed near the grounding line. In turn, the eskers modify local ice flow to initiate the bottom topography of the ice-shelf channels, and create small surface ridges extending onto the shelf. Relict features on the shelf are interpreted to indicate a history of these interactions and variability of past subglacial drainages. Because ice-shelf channels are loci where intense melting occurs to thin an ice shelf, these findings expose a novel link between subglacial drainage, sedimentation, and ice-shelf stability. To investigate the role of sediment transport beneath ice sheets further, we model the sheet-shelf system of the Ekstömisen catchment, Antarctica. A 3D finite element model (Elmer/ICE) is used to solve the transients full Stokes equation for isotropic, isothermal ice with a dynamic grounding line. We initialize the model with surface topography from the TanDEM-X satellites and by inverting simultaneously for ice viscosity and basal drag using present-day surface velocities. Results produce a flow field which is consitent with sattelite and on-site observations. Solving the age-depth relationship allows comparison with radar isochrones from airborne data, and gives information about the atmospheric/dynamic history of this sector. The flow field will eventually be used to identify potential sediment sources and sinks which we compare with more than 400 km of

  1. Production of energetic light fragments in extensions of the CEM and LAQGSM event generators of the Monte Carlo transport code MCNP6

    NASA Astrophysics Data System (ADS)

    Mashnik, Stepan G.; Kerby, Leslie M.; Gudima, Konstantin K.; Sierk, Arnold J.; Bull, Jeffrey S.; James, Michael R.

    2017-03-01

    We extend the cascade-exciton model (CEM), and the Los Alamos version of the quark-gluon string model (LAQGSM), event generators of the Monte Carlo N -particle transport code version 6 (MCNP6), to describe production of energetic light fragments (LF) heavier than 4He from various nuclear reactions induced by particles and nuclei at energies up to about 1 TeV/nucleon. In these models, energetic LF can be produced via Fermi breakup, preequilibrium emission, and coalescence of cascade particles. Initially, we study several variations of the Fermi breakup model and choose the best option for these models. Then, we extend the modified exciton model (MEM) used by these codes to account for a possibility of multiple emission of up to 66 types of particles and LF (up to 28Mg) at the preequilibrium stage of reactions. Then, we expand the coalescence model to allow coalescence of LF from nucleons emitted at the intranuclear cascade stage of reactions and from lighter clusters, up to fragments with mass numbers A ≤7 , in the case of CEM, and A ≤12 , in the case of LAQGSM. Next, we modify MCNP6 to allow calculating and outputting spectra of LF and heavier products with arbitrary mass and charge numbers. The improved version of CEM is implemented into MCNP6. Finally, we test the improved versions of CEM, LAQGSM, and MCNP6 on a variety of measured nuclear reactions. The modified codes give an improved description of energetic LF from particle- and nucleus-induced reactions; showing a good agreement with a variety of available experimental data. They have an improved predictive power compared to the previous versions and can be used as reliable tools in simulating applications involving such types of reactions.

  2. Improved design of proton source and low energy beam transport line for European Spallation Source

    NASA Astrophysics Data System (ADS)

    Neri, L.; Celona, L.; Gammino, S.; Mascali, D.; Castro, G.; Torrisi, G.; Cheymol, B.; Ponton, A.; Galatà, A.; Patti, G.; Gozzo, A.; Lega, L.; Ciavola, G.

    2014-02-01

    The design update of the European Spallation Source (ESS) accelerator is almost complete and the construction of the prototype of the microwave discharge ion source able to provide a proton beam current larger than 70 mA to the 3.6 MeV Radio Frequency Quadrupole (RFQ) started. The source named PS-ESS (Proton Source for ESS) was designed with a flexible magnetic system and an extraction system able to merge conservative solutions with significant advances. The ESS injector has taken advantage of recent theoretical updates and new plasma diagnostics tools developed at INFN-LNS (Laboratori Nazionali del Sud, Istituto Nazionale di Fisica Nucleare). The design strategy considers the PS-ESS and the low energy beam transport line as a whole, where the proton beam behaves like an almost neutralized non-thermalized plasma. Innovative solutions have been used as hereinafter described. Thermo-mechanical optimization has been performed to withstand the chopped beam and the misaligned focused beam over the RFQ input collimator; the results are reported here.

  3. Design of the low energy beam transport line between CARIBU and the EBIS charge breeder

    SciTech Connect

    Perry, A.; Ostroumov, P. N.; Barcikowski, A.; Dickerson, C.; Kondrashev, S. A.; Mustapha, B.; Savard, G.

    2015-01-09

    An Electron Beam Ion Source Charge Breeder (EBIS-CB) has been developed to breed radioactive beams from the CAlifornium Rare Isotope Breeder Upgrade (CARIBU) facility at ATLAS. The EBIS-CB will replace the existing ECR charge breeder to increase the intensity and improve the purity of reaccelerated radioactive ion beams. The EBIS-CB is in the final stage of off-line commissioning. Currently, we are developing a low energy beam transport (LEBT) system to transfer CARIBU beams to the EBIS-CB. As was originally planned, an RFQ cooler-buncher will precede the EBIS-CB. Recently, it was decided to include a multi-reflection time-of-flight (MR-TOF) mass-spectrometer following the RFQ. MR-TOF is a relatively new technology used to purify beams with a mass-resolving power up to 3×10{sup 5} as was demonstrated in experiments at CERN/ISOLDE. Very high purity singly-charged radioactive ion beams will be injected into the EBIS for charge breeding and due to its inherent properties, the EBIS-CB will maintain the purity of the charge bred beams. Possible contamination of residual gas ions will be greatly suppressed by achieving ultra-high vacuum in the EBIS trap. This paper will present and discuss the design of the LEBT and the overall integration of the EBIS-CB into ATLAS.

  4. Design of the low energy beam transport line between CARIBU and the EBIS charge breeder

    NASA Astrophysics Data System (ADS)

    Perry, A.; Ostroumov, P. N.; Barcikowski, A.; Dickerson, C.; Kondrashev, S. A.; Mustapha, B.; Savard, G.

    2015-01-01

    An Electron Beam Ion Source Charge Breeder (EBIS-CB) has been developed to breed radioactive beams from the CAlifornium Rare Isotope Breeder Upgrade (CARIBU) facility at ATLAS. The EBIS-CB will replace the existing ECR charge breeder to increase the intensity and improve the purity of reaccelerated radioactive ion beams. The EBIS-CB is in the final stage of off-line commissioning. Currently, we are developing a low energy beam transport (LEBT) system to transfer CARIBU beams to the EBIS-CB. As was originally planned, an RFQ cooler-buncher will precede the EBIS-CB. Recently, it was decided to include a multi-reflection time-of-flight (MR-TOF) mass-spectrometer following the RFQ. MR-TOF is a relatively new technology used to purify beams with a mass-resolving power up to 3×105 as was demonstrated in experiments at CERN/ISOLDE. Very high purity singly-charged radioactive ion beams will be injected into the EBIS for charge breeding and due to its inherent properties, the EBIS-CB will maintain the purity of the charge bred beams. Possible contamination of residual gas ions will be greatly suppressed by achieving ultra-high vacuum in the EBIS trap. This paper will present and discuss the design of the LEBT and the overall integration of the EBIS-CB into ATLAS.

  5. Improved design of proton source and low energy beam transport line for European Spallation Source

    SciTech Connect

    Neri, L. Celona, L.; Gammino, S.; Mascali, D.; Castro, G.; Ciavola, G.; Torrisi, G.; Cheymol, B.; Ponton, A.; Galatà, A.; Patti, G.; Gozzo, A.; Lega, L.

    2014-02-15

    The design update of the European Spallation Source (ESS) accelerator is almost complete and the construction of the prototype of the microwave discharge ion source able to provide a proton beam current larger than 70 mA to the 3.6 MeV Radio Frequency Quadrupole (RFQ) started. The source named PS-ESS (Proton Source for ESS) was designed with a flexible magnetic system and an extraction system able to merge conservative solutions with significant advances. The ESS injector has taken advantage of recent theoretical updates and new plasma diagnostics tools developed at INFN-LNS (Laboratori Nazionali del Sud, Istituto Nazionale di Fisica Nucleare). The design strategy considers the PS-ESS and the low energy beam transport line as a whole, where the proton beam behaves like an almost neutralized non-thermalized plasma. Innovative solutions have been used as hereinafter described. Thermo-mechanical optimization has been performed to withstand the chopped beam and the misaligned focused beam over the RFQ input collimator; the results are reported here.

  6. Improved design of proton source and low energy beam transport line for European Spallation Source.

    PubMed

    Neri, L; Celona, L; Gammino, S; Mascali, D; Castro, G; Torrisi, G; Cheymol, B; Ponton, A; Galatà, A; Patti, G; Gozzo, A; Lega, L; Ciavola, G

    2014-02-01

    The design update of the European Spallation Source (ESS) accelerator is almost complete and the construction of the prototype of the microwave discharge ion source able to provide a proton beam current larger than 70 mA to the 3.6 MeV Radio Frequency Quadrupole (RFQ) started. The source named PS-ESS (Proton Source for ESS) was designed with a flexible magnetic system and an extraction system able to merge conservative solutions with significant advances. The ESS injector has taken advantage of recent theoretical updates and new plasma diagnostics tools developed at INFN-LNS (Laboratori Nazionali del Sud, Istituto Nazionale di Fisica Nucleare). The design strategy considers the PS-ESS and the low energy beam transport line as a whole, where the proton beam behaves like an almost neutralized non-thermalized plasma. Innovative solutions have been used as hereinafter described. Thermo-mechanical optimization has been performed to withstand the chopped beam and the misaligned focused beam over the RFQ input collimator; the results are reported here.

  7. Effects of line defects on spin-dependent electronic transport of zigzag MoS2 nanoribbons

    NASA Astrophysics Data System (ADS)

    Li, Xin-Mei; Long, Meng-Qiu; Cui, Li-Ling; Yang, Kai-Wei; Zhang, Dan; Ding, Jia-Feng; Xu, Hui

    2016-01-01

    The nonlinear spin-dependent transport properties in zigzag molybdenum-disulfide nanoribbons (ZMNRs) with line defects are investigated systematically using nonequilibrium Green's function method combined with density functional theory. The results show that the line defects can enhance the electronic transfer ability of ZMNRs. The types and locations of the line defects are found critical in determining the spin polarization and the current-voltage (I-V) characteristics of the line defected ZMNRs. For the same defect type, the total currents of the ribbons with the line defects in the centers are lager than those on the edges. And for the same location, the total currents of the systems with the sulfur (S) line defect are larger than the according systems with the molybdenum (Mo) line defect. All the considered systems present magnetism properties. And in the S line defected systems, the spin reversal behaviors can be observed. In both the spin-up and spin-down states of the Mo line defected systems, there are obvious negative differential resistance behaviors. The mechanisms are proposed for these phenomena.

  8. Effects of line defects on spin-dependent electronic transport of zigzag MoS{sub 2} nanoribbons

    SciTech Connect

    Li, Xin-Mei; Yang, Kai-Wei; Zhang, Dan; Ding, Jia-Feng; Xu, Hui; Long, Meng-Qiu; Cui, Li-Ling

    2016-01-15

    The nonlinear spin-dependent transport properties in zigzag molybdenum-disulfide nanoribbons (ZMNRs) with line defects are investigated systematically using nonequilibrium Green’s function method combined with density functional theory. The results show that the line defects can enhance the electronic transfer ability of ZMNRs. The types and locations of the line defects are found critical in determining the spin polarization and the current-voltage (I-V) characteristics of the line defected ZMNRs. For the same defect type, the total currents of the ribbons with the line defects in the centers are lager than those on the edges. And for the same location, the total currents of the systems with the sulfur (S) line defect are larger than the according systems with the molybdenum (Mo) line defect. All the considered systems present magnetism properties. And in the S line defected systems, the spin reversal behaviors can be observed. In both the spin-up and spin-down states of the Mo line defected systems, there are obvious negative differential resistance behaviors. The mechanisms are proposed for these phenomena.

  9. SU-E-T-472: Characterization of the Very High Energy Electrons, ISO - 250 MeV (VHEE) Beam Generated by ALPHA-X Laser Wakefield Accelerator Beam Line for Utilization in Monte Carlo Simulation for Biomedical Experiment Planning.

    PubMed

    Moskvin, V; Subiel, A; Desrosiers, C; Wiggins, M; Maryanski, M; Mendonca, M; Boyd, M; Sorensen, A; Cipiccia, S; Issac, R; Welsh, G; Brunetti, E; Aniculaesei, C; Jaroszynski, D A

    2012-06-01

    Progress in the development of compact high-energy pulsed laser- plasma wakefield accelerators is opening up the potential for using Very High Energy Electron (VHEEs) beams in the range of 150 - 250 MeV for biomedical studies. Initial experiments using VHEE for this purpose have been carried out using the ALPHA-X laser-plasma wakefield accelerator beam line at the University of Strathclyde, Glasgow, UK. The purpose of this investigation is to use Monte Carlo simulations to plan experiments and compare with characterization of the interaction of the VHEE beam using a dosimeter. An experiment using the VHEE beam to irradiate a muscle-equivalent BANG polymer gel dosimeter has been carried out. Simulations have been used to prepare for the experiments. These were undertaken using the expected average energy for a pulse set and an energy spread approximated by Gaussian distribution. The model was implemented in FLUKA Monte Carlo code with follow up modeling using the Geant4 toolkit. The results have been compared with 1mm̂3 voxel laser CT based measurements of the dose deposited in the BANG dosimeter and with measurement of the induced radioactivity. The results of the measured dose from induced radioactivity have been compared with data from the FLUKA simulations. The beam model based on an average energy of particles in irradiation gives an acceptable estimate of the induced radioactivity and the dose deposited in the BANG dosimeter. Comparison with the dosimeter scanned profiles shows that the structure of the spectra of VHEE beams in the experiment and secondary scattered particles in the beam line should be accounted for in any model. Such model description of the VHEE beam for the ALPHA-X beam line has been developed. Monte Carlo simulations using the FLUKA code is an efficient way to plan a VHEE experiment and analyze data from measurements. © 2012 American Association of Physicists in Medicine.

  10. MO-A-BRD-10: A Fast and Accurate GPU-Based Proton Transport Monte Carlo Simulation for Validating Proton Therapy Treatment Plans

    SciTech Connect

    Wan Chan Tseung, H; Ma, J; Beltran, C

    2014-06-15

    Purpose: To build a GPU-based Monte Carlo (MC) simulation of proton transport with detailed modeling of elastic and non-elastic (NE) protonnucleus interactions, for use in a very fast and cost-effective proton therapy treatment plan verification system. Methods: Using the CUDA framework, we implemented kernels for the following tasks: (1) Simulation of beam spots from our possible scanning nozzle configurations, (2) Proton propagation through CT geometry, taking into account nuclear elastic and multiple scattering, as well as energy straggling, (3) Bertini-style modeling of the intranuclear cascade stage of NE interactions, and (4) Simulation of nuclear evaporation. To validate our MC, we performed: (1) Secondary particle yield calculations in NE collisions with therapeutically-relevant nuclei, (2) Pencil-beam dose calculations in homogeneous phantoms, (3) A large number of treatment plan dose recalculations, and compared with Geant4.9.6p2/TOPAS. A workflow was devised for calculating plans from a commercially available treatment planning system, with scripts for reading DICOM files and generating inputs for our MC. Results: Yields, energy and angular distributions of secondaries from NE collisions on various nuclei are in good agreement with the Geant4.9.6p2 Bertini and Binary cascade models. The 3D-gamma pass rate at 2%–2mm for 70–230 MeV pencil-beam dose distributions in water, soft tissue, bone and Ti phantoms is 100%. The pass rate at 2%–2mm for treatment plan calculations is typically above 98%. The net computational time on a NVIDIA GTX680 card, including all CPU-GPU data transfers, is around 20s for 1×10{sup 7} proton histories. Conclusion: Our GPU-based proton transport MC is the first of its kind to include a detailed nuclear model to handle NE interactions on any nucleus. Dosimetric calculations demonstrate very good agreement with Geant4.9.6p2/TOPAS. Our MC is being integrated into a framework to perform fast routine clinical QA of pencil

  11. Lines

    ERIC Educational Resources Information Center

    Mires, Peter B.

    2006-01-01

    National Geography Standards for the middle school years generally stress the teaching of latitude and longitude. There are many creative ways to explain the great grid that encircles our planet, but the author has found that students in his college-level geography courses especially enjoy human-interest stories associated with lines of latitude…

  12. Lines

    ERIC Educational Resources Information Center

    Mires, Peter B.

    2006-01-01

    National Geography Standards for the middle school years generally stress the teaching of latitude and longitude. There are many creative ways to explain the great grid that encircles our planet, but the author has found that students in his college-level geography courses especially enjoy human-interest stories associated with lines of latitude…

  13. Noble internal transport barriers and radial subdiffusion of toroidal magnetic lines

    NASA Astrophysics Data System (ADS)

    Misguich, J. H.; Reuss, J.-D.; Constantinescu, D.; Steinbrecher, G.; Vlad, M.; Spineanu, F.; Weyssow, B.; Balescu, R.

    2003-11-01

    Internal transport barriers (ITB's) observed in tokamaks are described by a purely magnetic approach. Magnetic line motion in toroidal geometry with broken magnetic surfaces is studied from a previously derived Hamiltonian map in situation of incomplete chaos. This appears to reproduce in a realistic way the main features of a tokamak, for a given safety factor profile and in terms of a single parameter L representing the amplitude of the magnetic perturbation. New results are given concerning the Shafranov shift as function of L. The phase space (psi ,θ ) of the "tokamap" describes the poloidal section of the line trajectories, where psi is the toroidal flux labelling the surfaces. For small values of L, closed magnetic surfaces exist (KAM tori) and island chains begin to appear on rational surfaces for higher values of L, with chaotic zones around hyperbolic points, as expected. Island remnants persist in the chaotic domain for all relevant values of L at the main rational q-values. Single trajectories of magnetic line motion indicate the persistence of a central protected plasma core, surrounded by a chaotic shell enclosed in a double-sided transport barrier: the latter is identified as being composed of two Cantori located on two successive “most-noble” numbers values of the perturbed safety factor, and forming an internal transport barrier (ITB). Magnetic lines which succeed to escape across this barrier begin to wander in a wide chaotic sea extending up to a very robust barrier (as long as Lprecsim 1) which is identified mathematically as a robust KAM surface at the plasma edge. In this case the motion is shown to be intermittent, with long stages of pseudo-trapping in the chaotic shell, or of sticking around island remnants, as expected for a continuous time random walk. For values of Lsucceq 1, above the escape threshold, most magnetic lines succeed to escape out of the external barrier which has become a permeable Cantorus. Statistical analysis of a

  14. Characterization of a Chinese hamster-human hybrid cell line with increased system L amino acid transport activity.

    PubMed Central

    Lobaton, C D; Moreno, A; Oxender, D L

    1984-01-01

    We have studied leucine transport in several Chinese hamster-human hybrid cell lines obtained by fusion of a temperature-sensitive line of Chinese hamster ovary cells, ts025C1, and normal human leukocytes. A hybrid cell line exhibiting a twofold increase in L-leucine uptake over that in the parental cell line was found. This hybrid cell line, 158CnpT-1, was temperature resistant, whereas the parental Chinese hamster ovary mutant, ts025C1, contained a temperature-sensitive leucyl-tRNA synthetase mutation. An examination of the different amino acid transport systems in this hybrid cell line revealed a specific increase of system L activity with no significant changes in systems A and ASC. The Vmax for L-leucine uptake exhibited by the hybrid 158CnpT-1 was twice that in the CHO parental mutant, ts025C1. Cytogenetic analysis showed that the hybrid 158CnpT-1 contains four complete human chromosomes (numbers 4, 5, 10, and 21) and three interspecific chromosomal translocations in a total complement of 34 chromosomes. Biochemical and cytogenetic analysis of segregant clones obtained from hybrid 158CnpT-1 showed that the primary temperature resistance and high system L transport phenotypes can be segregated from this hybrid independently. The loss of the primary temperature resistance was associated with the loss of the human chromosome 5, as previously reported by other laboratories, whereas the loss of the high leucine transport phenotype, which is associated with a lesser degree of temperature resistance, was correlated with the loss of human chromosome 20. Images PMID:6717430

  15. Characterization of a Chinese hamster-human hybrid cell line with increased system L amino acid transport activity.

    PubMed

    Lobaton, C D; Moreno, A; Oxender, D L

    1984-03-01

    We have studied leucine transport in several Chinese hamster-human hybrid cell lines obtained by fusion of a temperature-sensitive line of Chinese hamster ovary cells, ts025C1, and normal human leukocytes. A hybrid cell line exhibiting a twofold increase in L-leucine uptake over that in the parental cell line was found. This hybrid cell line, 158CnpT-1, was temperature resistant, whereas the parental Chinese hamster ovary mutant, ts025C1, contained a temperature-sensitive leucyl-tRNA synthetase mutation. An examination of the different amino acid transport systems in this hybrid cell line revealed a specific increase of system L activity with no significant changes in systems A and ASC. The Vmax for L-leucine uptake exhibited by the hybrid 158CnpT-1 was twice that in the CHO parental mutant, ts025C1. Cytogenetic analysis showed that the hybrid 158CnpT-1 contains four complete human chromosomes (numbers 4, 5, 10, and 21) and three interspecific chromosomal translocations in a total complement of 34 chromosomes. Biochemical and cytogenetic analysis of segregant clones obtained from hybrid 158CnpT-1 showed that the primary temperature resistance and high system L transport phenotypes can be segregated from this hybrid independently. The loss of the primary temperature resistance was associated with the loss of the human chromosome 5, as previously reported by other laboratories, whereas the loss of the high leucine transport phenotype, which is associated with a lesser degree of temperature resistance, was correlated with the loss of human chromosome 20.

  16. Monte Carlo simulations incorporating Mie calculations of light transport in tissue phantoms: Examination of photon sampling volumes for endoscopically compatible fiber optic probes

    SciTech Connect

    Mourant, J.R.; Hielscher, A.H.; Bigio, I.J.

    1996-04-01

    Details of the interaction of photons with tissue phantoms are elucidated using Monte Carlo simulations. In particular, photon sampling volumes and photon pathlengths are determined for a variety of scattering and absorption parameters. The Monte Carlo simulations are specifically designed to model light delivery and collection geometries relevant to clinical applications of optical biopsy techniques. The Monte Carlo simulations assume that light is delivered and collected by two, nearly-adjacent optical fibers and take into account the numerical aperture of the fibers as well as reflectance and refraction at interfaces between different media. To determine the validity of the Monte Carlo simulations for modeling the interactions between the photons and the tissue phantom in these geometries, the simulations were compared to measurements of aqueous suspensions of polystyrene microspheres in the wavelength range 450-750 nm.

  17. Mechanisms of cellular uptake, intracellular transportation, and degradation of CIGB-300, a Tat-conjugated peptide, in tumor cell lines.

    PubMed

    Benavent Acero, Fernando R; Perera Negrin, Yasser; Alonso, Daniel F; Perea, Silvio E; Gomez, Daniel E; Farina, Hernán G

    2014-06-02

    CIGB-300 is a cyclic synthetic peptide that induces apoptosis in malignant cells, elicits antitumor activity in cancer animal models, and shows tumor reduction signs when assayed in first-in-human phase I trial in patients with cervical tumors. CIGB-300 impairs phosphorylation by casein kinase 2 through targeting the substrate's phosphoacceptor domain. CIGB-300 was linked to the cell penetrating peptide Tat to facilitate the delivery into cells. Previously, we showed that CIGB-300 had a differential antiproliferative behavior in different tumor cell lines. In this work, we studied differential antiproliferative behavior in terms of cellular uptake, intracellular transportation, and degradation in tumor cell lines with dissimilar sensitivity to CIGB-300. The internalization of CIGB-300 was studied in different malignant cell lines. We found that the cell membrane heparan sulfate proteoglycans act as main receptors for extracellular CIGB-300 uptake. The most sensitive tumor cell lines showed higher intracellular incorporation of CIGB-300 in comparison to less sensitive cell lines. Furthermore, CIGB-300 uptake is time- and concentration-dependent in all studied cell lines. It was shown that CIGB-300 has the ability to penetrate cells mainly by direct membrane translocation. However, a minor proportion of the peptide uses an energy-dependent endocytic pathway mechanism to gain access into cells. CIGB-300 is internalized and transported into cells preferentially by caveolae-mediated endocytosis. Lysosomes are involved in CIGB-300 degradation; highly sensitive cell lines showed degradation at earlier times compared to low sensitive cells. Altogether, our data suggests a mechanism of internalization, vesicular transportation, and degradation for CIGB-300 in tumor cells.

  18. The alteration of serine transporter activity in a cell line model of amyotrophic lateral sclerosis (ALS).

    PubMed

    Lee, Na-Young; Kim, Yunha; Ryu, Hoon; Kang, Young-Sook

    2017-01-29

    The alteration of d-serine levels is associated with the pathogenesis of sporadic ALS and mutant SOD1 (G93A) animal model of ALS. However, the exact mechanism of d-serine transport is not known in ALS. To better understand the distribution of d-serine in ALS, we determined the activity and the expression of serine transporter in a motor neuronal cell line model of ALS (NSC-34/hSOD1(G93A) cells). The uptake of [(3)H]d-serine was significantly lower in NSC-34/hSOD1(G93A) cells than in control NSC-34 and NSC-34/hSOD1(wt) cells. In contrast, the uptake of [(3)H]l-serine, precursor of d-serine, was markedly increased in NSC-34/hSOD1(G93A) cells compared to control NSC-34 and NSC-34/hSOD1(wt) cells. Both [(3)H]d-serine and [(3)H]l-serine uptake were saturable in these cells. The estimated Michaelis-Menten constant, Km, for d-serine uptakes was higher in NSC-34/hSOD1(G93A) cells than in NSC-34/hSOD1(wt) cells while the Km for l-serine uptake was 2 fold lower in NSC-34/hSOD1(G93A) cells than in control cells. [(3)H]d-serine and [(3)H]l-serine uptakes took place in a Na(+)-dependent manner, and both uptakes were significantly inhibited by system ASC (alanine-serine-cysteine) substrates. As a result of small interfering RNA experiments, we found that ASCT2 (SLC1A5) and ASCT1 (SLC1A4) are involved in [(3)H]d-serine and [(3)H]l-serine uptake in NSC-34/hSOD1(G93A) cells, respectively. The level of SLC1A4 mRNA was significantly increased in NSC-34/hSOD1(G93A) compared to NSC-34 and NSC-34/hSOD1(wt) cells. In contrast, the level of SLC7A10 mRNA was relatively lower in NSC-34/hSOD1(G93A) cells than the control cells. Together, these data suggest that the pathological alteration of d- and l-serine uptakes in ALS is driven by the affinity change of d-and l-serine uptake system.

  19. Bending of protonema cells in a plastid glycolate/glycerate transporter knockout line of Physcomitrella patens.

    PubMed

    Nakahara, Jin; Takechi, Katsuaki; Myouga, Fumiyoshi; Moriyama, Yasuko; Sato, Hiroshi; Takio, Susumu; Takano, Hiroyoshi

    2015-01-01

    Arabidopsis LrgB (synonym PLGG1) is a plastid glycolate/glycerate transporter associated with recycling of 2-phosphoglycolate generated via the oxygenase activity of ribulose-1,5-bisphosphate carboxylase/oxygenase (RuBisCO). We isolated two homologous genes (PpLrgB1 and B2) from the moss Physcomitrella patens. Phylogenetic tree analysis showed that PpLrgB1 was monophyletic with LrgB proteins of land plants, whereas PpLrgB2 was divergent from the green plant lineage. Experiments with PpLrgB-GFP fusion proteins suggested that both PpLrgB1 and B2 proteins were located in chloroplasts. We generated PpLrgB single (∆B1 and ∆B2) and double (∆B1/∆B2)-knockout lines using gene targeting of P. patens. The ∆B1 plants showed decreases in growth and photosynthetic activity, and their protonema cells were bent and accumulated glycolate. However, because ∆B2 and ∆B1/∆B2 plants showed no obvious phenotypic change relative to the wild-type or ∆B1 plants, respectively, the function of PpLrgB2 remains unclear. Arabidopsis LrgB could complement the ∆B1 phenotype, suggesting that the function of PpLrgB1 is the same as that of AtLrgB. When ∆B1 was grown under high-CO2 conditions, all novel phenotypes were suppressed. Moreover, protonema cells of wild-type plants exhibited a bending phenotype when cultured on media containing glycolate or glycerate, suggesting that accumulation of photorespiratory metabolites caused P. patens cells to bend.

  20. Contactless transport of matter in the first five resonance modes of a line-focused acoustic manipulator.

    PubMed

    Foresti, Daniele; Nabavi, Majid; Poulikakos, Dimos

    2012-02-01

    The first five resonance modes for transport of matter in a line-focused acoustic levitation system are investigated. Contactless transport was achieved by varying the height between the radiating plate and the reflector. Transport and levitation of droplets in particular involve two limits of the acoustic forces. The lower limit corresponds to the minimum force required to overcome the gravitational force. The upper limit corresponds to the maximum acoustic pressure beyond which atomization of the droplet occurs. As the droplet size increases, the lower limit increases and the upper limit decreases. Therefore to have large droplets levitated, relatively flat radiation pressure amplitude during the translation is needed. In this study, using a finite element model, the Gor'kov potential was calculated for different heights between the reflector and the radiating plate. The application of the Gor'kov potential was extended to study the range of droplet sizes for which the droplets can be levitated and transported without atomization. It was found that the third resonant mode (H(3)-mode) represents the best compromise between high levitation force and smooth pattern transition, and water droplets of millimeter radius can be levitated and transported. The H(3)-mode also allows for three translation lines in parallel. © 2012 Acoustical Society of America

  1. A demonstration of a transportable radio interferometric surveying system with 3-cm accuracy on a 307-m base line

    NASA Technical Reports Server (NTRS)

    Ong, K. M.; Macdoran, P. F.; Thomas, J. B.; Fliegel, H. F.; Skjerve, L. J.; Spitzmesser, D. J.; Batelaan, P. D.; Paine, S. R.; Newsted, M. G.

    1976-01-01

    A precision geodetic measurement system (Aries, for Astronomical Radio Interferometric Earth Surveying) based on the technique of very long base line interferometry has been designed and implemented through the use of a 9-m transportable antenna and the NASA 64-m antenna of the Deep Space Communications Complex at Goldstone, California. A series of experiments designed to demonstrate the inherent accuracy of a transportable interferometer was performed on a 307-m base line during the period from December 1973 to June 1974. This short base line was chosen in order to obtain a comparison with a conventional survey with a few-centimeter accuracy and to minimize Aries errors due to transmission media effects, source locations, and earth orientation parameters. The base-line vector derived from a weighted average of the measurements, representing approximately 24 h of data, possessed a formal uncertainty of about 3 cm in all components. This average interferometry base-line vector was in good agreement with the conventional survey vector within the statistical range allowed by the combined uncertainties (3-4 cm) of the two techniques.

  2. A demonstration of a transportable radio interferometric surveying system with 3-cm accuracy on a 307-m base line

    NASA Technical Reports Server (NTRS)

    Ong, K. M.; Macdoran, P. F.; Thomas, J. B.; Fliegel, H. F.; Skjerve, L. J.; Spitzmesser, D. J.; Batelaan, P. D.; Paine, S. R.; Newsted, M. G.

    1976-01-01

    A precision geodetic measurement system (Aries, for Astronomical Radio Interferometric Earth Surveying) based on the technique of very long base line interferometry has been designed and implemented through the use of a 9-m transportable antenna and the NASA 64-m antenna of the Deep Space Communications Complex at Goldstone, California. A series of experiments designed to demonstrate the inherent accuracy of a transportable interferometer was performed on a 307-m base line during the period from December 1973 to June 1974. This short base line was chosen in order to obtain a comparison with a conventional survey with a few-centimeter accuracy and to minimize Aries errors due to transmission media effects, source locations, and earth orientation parameters. The base-line vector derived from a weighted average of the measurements, representing approximately 24 h of data, possessed a formal uncertainty of about 3 cm in all components. This average interferometry base-line vector was in good agreement with the conventional survey vector within the statistical range allowed by the combined uncertainties (3-4 cm) of the two techniques.

  3. SU-E-CAMPUS-I-02: Estimation of the Dosimetric Error Caused by the Voxelization of Hybrid Computational Phantoms Using Triangle Mesh-Based Monte Carlo Transport

    SciTech Connect

    Lee, C; Badal, A

    2014-06-15

    Purpose: Computational voxel phantom provides realistic anatomy but the voxel structure may result in dosimetric error compared to real anatomy composed of perfect surface. We analyzed the dosimetric error caused from the voxel structure in hybrid computational phantoms by comparing the voxel-based doses at different resolutions with triangle mesh-based doses. Methods: We incorporated the existing adult male UF/NCI hybrid phantom in mesh format into a Monte Carlo transport code, penMesh that supports triangle meshes. We calculated energy deposition to selected organs of interest for parallel photon beams with three mono energies (0.1, 1, and 10 MeV) in antero-posterior geometry. We also calculated organ energy deposition using three voxel phantoms with different voxel resolutions (1, 5, and 10 mm) using MCNPX2.7. Results: Comparison of organ energy deposition between the two methods showed that agreement overall improved for higher voxel resolution, but for many organs the differences were small. Difference in the energy deposition for 1 MeV, for example, decreased from 11.5% to 1.7% in muscle but only from 0.6% to 0.3% in liver as voxel resolution increased from 10 mm to 1 mm. The differences were smaller at higher energies. The number of photon histories processed per second in voxels were 6.4×10{sup 4}, 3.3×10{sup 4}, and 1.3×10{sup 4}, for 10, 5, and 1 mm resolutions at 10 MeV, respectively, while meshes ran at 4.0×10{sup 4} histories/sec. Conclusion: The combination of hybrid mesh phantom and penMesh was proved to be accurate and of similar speed compared to the voxel phantom and MCNPX. The lowest voxel resolution caused a maximum dosimetric error of 12.6% at 0.1 MeV and 6.8% at 10 MeV but the error was insignificant in some organs. We will apply the tool to calculate dose to very thin layer tissues (e.g., radiosensitive layer in gastro intestines) which cannot be modeled by voxel phantoms.

  4. Transport mechanisms of nicotine across the human intestinal epithelial cell line Caco-2.

    PubMed

    Fukada, Atsuko; Saito, Hideyuki; Inui, Ken-Ichi

    2002-08-01

    Ulcerative colitis is a disease more commonly seen in nonsmokers. Because nicotine was postulated to be a beneficial component of tobacco smoke for ulcerative colitis, various formulations of nicotine have been developed to improve the local bioavailability within the gastrointestinal tissue. In the present study, to characterize the disposition of nicotine in the intestines, we investigated intestinal nicotine transport using Caco-2 cells. Nicotine was predominantly transported across Caco-2 cell monolayers in a unidirectional mode, corresponding to intestinal secretion, by pH-dependent specific transport systems. The specific uptake systems appear to be distinct from organic cation transporters and the transport system for tertiary amines, in terms of its substrate specificity and the pattern of the interaction. These transport systems could play a role in the intestinal accumulation of nicotine from plasma and could also be responsible for the topical delivery of nicotine for ulcerative colitis therapy. These findings could provide useful information for the design of effective nicotine delivery.

  5. MONTE CARLO RADIATION-HYDRODYNAMICS WITH IMPLICIT METHODS

    SciTech Connect

    Roth, Nathaniel; Kasen, Daniel

    2015-03-15

    We explore the application of Monte Carlo transport methods to solving coupled radiation-hydrodynamics (RHD) problems. We use a time-dependent, frequency-dependent, three-dimensional radiation transport code that is special relativistic and includes some detailed microphysical interactions such as resonant line scattering. We couple the transport code to two different one-dimensional (non-relativistic) hydrodynamics solvers: a spherical Lagrangian scheme and a Eulerian Godunov solver. The gas–radiation energy coupling is treated implicitly, allowing us to take hydrodynamical time-steps that are much longer than the radiative cooling time. We validate the code and assess its performance using a suite of radiation hydrodynamical test problems, including ones in the radiation energy dominated regime. We also develop techniques that reduce the noise of the Monte Carlo estimated radiation force by using the spatial divergence of the radiation pressure tensor. The results suggest that Monte Carlo techniques hold promise for simulating the multi-dimensional RHD of astrophysical systems.

  6. Upgrade of the beam transport lines and the beam-abort system and development of a tune compensator in KEKB

    NASA Astrophysics Data System (ADS)

    Iida, Naoko; Kikuchi, Mitsuo; Mimashi, Toshihiro; Nakayama, Hisayoshi; Sakamoto, Yutaka; Satoh, Kotaro; Takasaki, Seiji; Tawada, Masafumi

    2013-03-01

    The KEKB collider achieved a maximum peak luminosity of 2.1×1034 cm-2 s-1 and an integrated luminosity of 1 ab-1 in its ten-year operation. Behind these glorious records there have been uncountable improvements in every subsystem. This paper describes the improvements in the beam transport line, injection kickers, septum magnets, the beam-abort system, and a newly developed pulsed-quadrupole system in detail.

  7. Identification of an organic anion transport system in the human colon carcinoma cell line HT29 clone 19A.

    PubMed

    Abrahamse, S L; Rechkemmer, G

    2001-01-01

    The human colon carcinoma cell line HT29 c1.19A was studied for organic anion transporter activity by determining intracellular fluo-3 and fura-red accumulation and by measuring fluo-3 efflux. Modulators of organic anion transport systems were used to identify the transporters that are involved in dye extrusion. Addition of probenecid to the dye-loading medium, containing 10 microM fluo-3/AM and fura-red/AM, resulted in a dose-dependent increase in fluo-3 and fura-red accumulation in the cells. The increase in fluo-3 accumulation in the cells in the presence of probenecid was explained by the inhibitory effect of this compound on fluo-3 efflux. Fluo-3 efflux from the cells was also inhibited by sulfinpyrazone, another inhibitor of organic anion transport. Substrates of renal probenecid-sensitive organic anion exchange mechanisms as well as modulators of multidrug resistance associated protein (MRP) activity did not influence fluo-3 extrusion rates. However, reducing intracellular ATP contents completely blocked fluo-3 extrusion. Moreover, MK571, an inhibitor of MRP, significantly stimulated dye accumulation, whereas inhibitors of the multidrug resistance gene (MDR1) product Pglycoprotein, cyclosporin A and verapamil, did not. As probenecid inhibits fluo-3 efflux across the apical membrane of cells grown on permeable supports, we conclude that a probenecid-sensitive organic anion transporter is present in the apical membrane of HT29 c1.19A cells. This organic anion transport system differs from MDRI and MRP2.

  8. SABRINA - An interactive geometry modeler for MCNP (Monte Carlo Neutron Photon)

    SciTech Connect

    West, J.T.; Murphy, J.

    1988-01-01

    SABRINA is an interactive three-dimensional geometry modeler developed to produce complicated models for the Los Alamos Monte Carlo Neutron Photon program MCNP. SABRINA produces line drawings and color-shaded drawings for a wide variety of interactive graphics terminals. It is used as a geometry preprocessor in model development and as a Monte Carlo particle-track postprocessor in the visualization of complicated particle transport problem. SABRINA is written in Fortran 77 and is based on the Los Alamos Common Graphics System, CGS. 5 refs., 2 figs.

  9. Paracellular transport through healthy and cystic fibrosis bronchial epithelial cell lines--do we have a proper model?

    PubMed

    Molenda, Natalia; Urbanova, Katarina; Weiser, Nelly; Kusche-Vihrog, Kristina; Günzel, Dorothee; Schillers, Hermann

    2014-01-01

    It has been reported recently that the cystic fibrosis transmembrane conductance regulator (CFTR) besides transcellular chloride transport, also controls the paracellular permeability of bronchial epithelium. The aim of this study was to test whether overexpressing wtCFTR solely regulates paracellular permeability of cell monolayers. To answer this question we used a CFBE41o- cell line transfected with wtCFTR or mutant F508del-CFTR and compered them with parental line and healthy 16HBE14o- cells. Transepithelial electrical resistance (TER) and paracellular fluorescein flux were measured under control and CFTR-stimulating conditions. CFTR stimulation significant decreased TER in 16HBE14o- and also in CFBE41o- cells transfected with wtCFTR. In contrast, TER increased upon stimulation in CFBE41o- cells and CFBE41o- cells transfected with F508del-CFTR. Under non-stimulated conditions, all four cell lines had similar paracellular fluorescein flux. Stimulation increased only the paracellular permeability of the 16HBE14o- cell monolayers. We observed that 16HBE14o- cells were significantly smaller and showed a different structure of cell-cell contacts than CFBE41o- and its overexpressing clones. Consequently, 16HBE14o- cells have about 80% more cell-cell contacts through which electrical current and solutes can leak. Also tight junction protein composition is different in 'healthy' 16HBE14o- cells compared to 'cystic fibrosis' CFBE41o- cells. We found that claudin-3 expression was considerably stronger in 16HBE14o- cells than in the three CFBE41o- cell clones and thus independent of the presence of functional CFTR. Together, CFBE41o- cell line transfection with wtCFTR modifies transcellular conductance, but not the paracellular permeability. We conclude that CFTR overexpression is not sufficient to fully reconstitute transport in CF bronchial epithelium. Hence, it is not recommended to use those cell lines to study CFTR-dependent epithelial transport.

  10. In-situ characterization of wastewater flow and transport from at-grade line sources to shallow groundwater

    NASA Astrophysics Data System (ADS)

    Weldeyohannes, A. O.; Kachanoski, R. G.; Dyck, M. F.

    2011-12-01

    A better understanding of multidimensional unsaturated and saturated flow and transport under boundary conditions typical of on-site wastewater disposal systems is required to assess the risk to groundwater contamination. The main objective of this research is to characterize in-situ wastewater flow and transport from at-grade line sources on a shallow groundwater conditions. The research site was conducted at Wetaskiwin Rest Stop, Alberta, Canada, where ultraviolet disinfected wastewater has been disposed off to the ground via pressurized at-grade line sources since 2007. The site was characterized for wastewater plume and temporal groundwater fluctuation by using Electromagnetic induction (EM31) and (EM38); and by grid of 74 water table wells, 14 piezometers and 11 transducers. Groundwater was analyzed for selected tracers (pH, EC and Cl) and some microbiology (e.g. E. coli). From the results wastewater plume was identified; and wastewater plume center of mass and average flow direction were estimated. Along the horizontal plume center of mass, 30 monitoring wells in 10 nests and 31 temperature sensors in 5 nests were installed to get vertical resolution of the wastewater plume and to track contaminant transport over time. Results, implications and plans for future investigations will be presented. The research output will benefit future research on contaminant fate and transport and groundwater risk assessment plans. Key words: On-site wastewater treatment/disposal system, Wastewater plume, Groundwater contamination.

  11. Transport of poly(acrylic acid) coated 2-line ferrihydrite nanoparticles in saturated aquifer sediments for environmental remediation

    NASA Astrophysics Data System (ADS)

    Xiang, Aishuang; Zhou, Sheng; Koel, Bruce E.; Jaffé, Peter R.

    2014-04-01

    Groundwater remediation using iron oxide and zero-valent iron nanoparticles (NPs) can be effective, but is limited in many applications due to the NP strong retention in groundwater-saturated porous media after injection, the passivation of the porous surface, and the high cost of nanomaterials versus macro scale iron. In this study, we investigated transport of bare and polymer-coated 2-line ferrihydrite NPs (30-300 nm) in saturated aquifer sediments. The influence of poly(acrylic acid) (PAA) polymer coatings was studied on the colloidal stability and transport in sediments packed column tests simulating groundwater flow in saturated sediments. In addition, the influence of calcium cations was investigated by transport measurements using sediments with calcium concentrations in the aqueous phase ranging from 0.5 (typical for most sediments) to 2 mM. Measurements were also made of zeta potential, hydrodynamic diameter, polymer adsorption and desorption properties, and bio-availability of PAA-coated NPs. We found that NP transport through the saturated aquifer sediments was improved by PAA coating and that the transport properties could be tuned by adjusting the polymer concentration. We further discovered that PAA coatings enhanced NP transport, compared to bare NPs, in all calcium-containing experiments tested, however, the presence of calcium always exhibited a negative effect on NP transport. In tests of bioavailability, the iron reduction rate of the coated and bare NPs by Geobacter sulfurreducens was the same, which shows that the PAA coating does not significantly reduce NP Fe(III) bioavailability. Our results demonstrate that much improved transport of iron oxide NP can be achieved in saturated aquifer sediments by introducing negatively charged polyelectrolytes and optimizing polymer concentrations, and furthermore, these coated NPs retain their bioavailability that is needed for applications in bio-environmental remediation.

  12. 47 CFR 69.713 - Common line, traffic-sensitive, and tandem-switched transport services.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... (CONTINUED) COMMON CARRIER SERVICES (CONTINUED) ACCESS CHARGES Pricing Flexibility § 69.713 Common line... pricing flexibility with respect to the following services: (1) Common line services, as described in... described in §§ 69.111(a)(2)(i) and (ii). (b) Phase I triggers. (1) To obtain Phase I pricing...

  13. 47 CFR 69.713 - Common line, traffic-sensitive, and tandem-switched transport services.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... (CONTINUED) COMMON CARRIER SERVICES (CONTINUED) ACCESS CHARGES Pricing Flexibility § 69.713 Common line... pricing flexibility with respect to the following services: (1) Common line services, as described in... described in §§ 69.111(a)(2)(i) and (ii). (b) Phase I triggers. (1) To obtain Phase I pricing...

  14. 47 CFR 69.713 - Common line, traffic-sensitive, and tandem-switched transport services.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... (CONTINUED) COMMON CARRIER SERVICES (CONTINUED) ACCESS CHARGES Pricing Flexibility § 69.713 Common line... pricing flexibility with respect to the following services: (1) Common line services, as described in... described in §§ 69.111(a)(2)(i) and (ii). (b) Phase I triggers. (1) To obtain Phase I pricing...

  15. 47 CFR 69.713 - Common line, traffic-sensitive, and tandem-switched transport services.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... (CONTINUED) COMMON CARRIER SERVICES (CONTINUED) ACCESS CHARGES Pricing Flexibility § 69.713 Common line... pricing flexibility with respect to the following services: (1) Common line services, as described in... described in §§ 69.111(a)(2)(i) and (ii). (b) Phase I triggers. (1) To obtain Phase I pricing...

  16. 47 CFR 69.713 - Common line, traffic-sensitive, and tandem-switched transport services.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... (CONTINUED) COMMON CARRIER SERVICES (CONTINUED) ACCESS CHARGES Pricing Flexibility § 69.713 Common line... pricing flexibility with respect to the following services: (1) Common line services, as described in... described in §§ 69.111(a)(2)(i) and (ii). (b) Phase I triggers. (1) To obtain Phase I pricing...

  17. Effect of oral contraceptives on the transport of chlorpromazine across the CACO-2 intestinal epithelial cell line.

    PubMed

    Brown, Deon; Goosen, Theunis C; Chetty, Mano; Hamman, Josias H

    2003-09-01

    In previous chlorpromazine pharmacokinetic studies a dramatic elevation in blood plasma levels of this drug was observed when taken in combination with oral contraceptives. Different mechanisms have been postulated to explain this observation. The aim of the study was to investigate whether oral contraceptives such as ethinyloestradiol and progesterone enhance the absorption of chlorpromazine by means of inhibiting P-glycoprotein (P-gp) and if this effect is mainly due to ethinyloestradiol or progesterone or their combination. The Caco-2 cell line was used as an in vitro model to study the effects of these compounds on the transport of chlorpromazine. Both apical to basolateral (AP-BL) and basolateral to apical (BL-AP) transport studies were done on chlorpromazine in combination with different compounds. Ethinyloestradiol enhanced the AP-BL cumulative transport of chlorpromazine by 11.5% compared to the control group, which was also statistically significantly higher than the effect caused by progesterone (0.8%). A combination of these two steroidal hormones enhanced the cumulative transport of chlorpromazine by only 2.0% compared to the control group. This indicates the possible existence of separate drug-binding sites for these two hormones and chlorpromazine on P-gp. The drug-binding site (or receptor) for progesterone probably interacts allosterically with the binding site for ethinyloestradiol and thereby decreasing its transport enhancing effects on chlorpromazine.

  18. Interaction of ABC transport proteins with toxic metals at the level of gene and transport activity in the PLHC-1 fish cell line.

    PubMed

    Della Torre, Camilla; Zaja, Roko; Loncar, Jovica; Smital, Tvrtko; Focardi, Silvano; Corsi, Ilaria

    2012-06-25

    The aim of this study was to investigate the interaction of four toxic metals with ABC transport proteins in piscine cell line PLHC-1. Cells were exposed for 24 h to 0.01-1 μM of CdCl(2), HgCl(2), As(2)O(3), or K(2)Cr(2)O(7) and the expression of a series of ABC genes (abcb1, abcc1-4) was determined using qRT-PCR. Using the fluorescent model substrates calcein-AM and monochlorbimane we measured interaction of metals with the transport activity of ABC transporters. P-glycoprotein (P-gp) activity was measured in PLHC-1/dox (P-gp overexpressing cells) while activity and interactions of metals with MRPs was measured in PLHC-1/wt cells. After 24 h exposure, abcc2-4 genes were dose-dependently up-regulated by all metals, while abcb1 and abcc1 were less affected. Up-regulation of abcc2 was more pronounced, with up to 8-fold increase in expression. Abcc3 and abcc4 were moderately inducible by HgCl(2) with 3.3-fold and 2.2-fold, respectively. All metals caused a significant inhibition of both P-gp (2.9- to 4-fold vs. controls) and MRP (1.3- to 1.8-fold) transport activities. Modulation of ABC genes and transport activities was further investigated in PLHC-1/wt cells exposed to 1 μM HgCl(2) for 72 h and in Hg resistant cells selected by long term cultivation of PLHC-1/wt cells in increasing concentrations of HgCl(2). Exposure to HgCl(2) for 72 h induced MRP genes expression and efflux activity. The long term cultivation of PLHC-1/wt cells in HgCl(2), did not cause prolonged up-regulation of the tested abc genes but resulted in higher MRP transport activities as determined by the increased sensitivity of these cells to MK571 (MRP specific inhibitor). Results of the present study indicated specific interaction of metals with selected ABC transport proteins. Modulation of ABC transporters takes place at both transcriptional and functional level. An active involvement of efflux pumps in Hg clearance in fish is suggested. Copyright © 2012 Elsevier Ireland Ltd. All rights

  19. Effect of stereochemistry on the transport of Aca-linked beta-turn peptidomimetics across a human intestinal cell line.

    PubMed

    Tamura, K; Agrios, K A; Vander Velde, D; Aubé, J; Borchardt, R T

    1997-09-01

    Transcellular transport is one of the most important barriers facing the development of new therapeutic agents. However, little is known about the specific effects of structure and particularly stereochemistry on cell permeability. An attractive in vitro model has been developed for the direct assessment of cell transport, using the immortalized human epithelial cell line, Caco-2. The present study assesses the effects of stereochemistry on transport in a commonly used beta-turn model system. Thus, L,L- and L,D-Ala-Ala were cyclized with aminocaproic acid, resulting in macrocycles in which the dipeptides correspond to the i + 1 and i + 2 positions of a beta-turn. The transport of these dipeptides across a Caco-2 cell monolayer was determined, along with corresponding acyclic models (L,L- and L,D-CH3CH2C(O)-Ala-Ala-n-Pr). The transport studies were carried out in the presence and absence of verapamil, a known inhibitor of the apically polarized efflux system present in Caco-2 cells. Both apical-->basolateral and basolateral-->apical transport were measured. Measurements made in the presence of verapamil showed that the cyclic peptides experienced a ca. 4-5-fold difference in intrinsic flux depending on stereochemistry, with the L,D isomer being transported at a higher rate. These differences disappeared in the acyclic cases examined (permeability coefficient ratios of the L,D/L,L isomers were 1.04-1.13). These observations are discussed in terms of the conformations and hydrogen-bonding characteristics of the compounds as determined by NMR spectroscopy.

  20. Bicarbonate-dependent chloride transport drives fluid secretion by the human airway epithelial cell line Calu-3

    PubMed Central

    Shan, Jiajie; Liao, Jie; Huang, Junwei; Robert, Renaud; Palmer, Melissa L; Fahrenkrug, Scott C; O'Grady, Scott M; Hanrahan, John W

    2012-01-01

    Anion and fluid secretion are both defective in cystic fibrosis (CF); however, the transport mechanisms are not well understood. In this study, Cl− and HCO3− secretion was measured using genetically matched CF transmembrane conductance regulator (CFTR)-deficient and CFTR-expressing cell lines derived from the human airway epithelial cell line Calu-3. Forskolin stimulated the short-circuit current (Isc) across voltage-clamped monolayers, and also increased the equivalent short-circuit current (Ieq) calculated under open-circuit conditions. Isc was equivalent to the HCO3− net flux measured using the pH-stat technique, whereas Ieq was the sum of the Cl− and HCO3− net fluxes. Ieq and HCO3− fluxes were increased by bafilomycin and ZnCl2, suggesting that some secreted HCO3− is neutralized by parallel electrogenic H+ secretion. Ieq and fluid secretion were dependent on the presence of both Na+ and HCO3−. The carbonic anhydrase inhibitor acetazolamide abolished forskolin stimulation of Ieq and HCO3− secretion, suggesting that HCO3− transport under these conditions requires catalysed synthesis of carbonic acid. Cl− was the predominant anion in secretions under all conditions studied and thus drives most of the fluid transport. Nevertheless, 50–70% of Cl− and fluid transport was bumetanide-insensitive, suggesting basolateral Cl− loading by a sodium–potassium–chloride cotransporter 1 (NKCC1)-independent mechanism. Imposing a transepithelial HCO3− gradient across basolaterally permeabilized Calu-3 cells sustained a forskolin-stimulated current, which was sensitive to CFTR inhibitors and drastically reduced in CFTR-deficient cells. Net HCO3− secretion was increased by bilateral Cl− removal and therefore did not require apical Cl−/HCO3− exchange. The results suggest a model in which most HCO3− is recycled basolaterally by exchange with Cl−, and the resulting HCO3−-dependent Cl− transport provides an osmotic driving force for

  1. Numerical and experimental study of atomic transport and Balmer line intensity in Linac4 negative ion source

    SciTech Connect

    Shibata, T. Nishida, K.; Hatayama, A.; Mattei, S.; Lettry, J.

    2015-04-08

    Time structure of Balmer H{sub α} line intensity in Linac4 RF plasma has been analyzed by the combined simulation model of atomic transport and Collisional-Radiative models. As a preliminary result, time variation of the line intensity in the ignition phase of RF plasma is calculated and compared with the experimental results by photometry. For the comparison, spatial distribution of the local H{sub α} photon emission rate at each time is calculated from the numerical model. The contribution of the local photon emission rates to the observed line intensity via optical viewing port is also investigated by application of the mock-up of the optical viewing port and the known light source. It has been clarified from the analyses that the higher and the lower peaks of the H{sub α} line intensity observed during 1 RF cycle is mainly due to the different spatial distributions in the electron energy distribution function and the resultant local photon emission rate. These results support previous suggestion that the existence of the capacitive electric field in axial direction leads to the higher/lower peaks of the line intensity.

  2. Drug transporter gene expression in human colorectal tissue and cell lines: modulation with antiretrovirals for microbicide optimization.

    PubMed

    Mukhopadhya, Indrani; Murray, Graeme I; Berry, Susan; Thomson, John; Frank, Bruce; Gwozdz, Garry; Ekeruche-Makinde, Julia; Shattock, Robin; Kelly, Charles; Iannelli, Francesco; Pozzi, Gianni; El-Omar, Emad M; Hold, Georgina L; Hijazi, Karolin

    2016-02-01

    The objectives of this study were to comprehensively assess mRNA expression of 84 drug transporters in human colorectal biopsies and six representative cell lines, and to investigate the alteration of drug transporter gene expression after exposure to three candidate microbicidal antiretroviral (ARV) drugs (tenofovir, darunavir and dapivirine) in the colorectal epithelium. The outcome of the objectives informs development of optimal ARV-based microbicidal formulations for prevention of HIV-1 infection. Drug transporter mRNA expression was quantified from colorectal biopsies and cell lines by quantitative real-time PCR. Relative mRNA expression was quantified in Caco-2 cells and colorectal explants after induction with ARVs. Data were analysed using Pearson's product moment correlation (r), hierarchical clustering and principal component analysis (PCA). Expression of 58 of the 84 transporters was documented in colorectal biopsies, with genes for CNT2, P-glycoprotein (P-gp) and MRP3 showing the highest expression. No difference was noted between individual subjects when analysed by age, gender or anatomical site (rectum or recto-sigmoid) (r = 0.95-0.99). High expression of P-gp and CNT2 proteins was confirmed by immunohistochemical staining. Similarity between colorectal tissue and cell-line drug transporter gene expression was variable (r = 0.64-0.84). PCA showed distinct clustering of human colorectal biopsy samples, with the Caco-2 cells defined as the best surrogate system. Induction of Caco-2 cell lines with ARV drugs suggests that darunavir-based microbicides incorporating tenofovir may result in drug-drug interactions likely to affect distribution of individual drugs to sub-epithelial target cells. These findings will help optimize complex formulations of rectal microbicides to realize their full potential as an effective approach for pre-exposure prophylaxis against HIV-1 infection. © The Author 2015. Published by Oxford University Press on behalf of the

  3. Lagrangian transport near perturbed periodic lines in three-dimensional unsteady flows

    NASA Astrophysics Data System (ADS)

    Speetjens, Michel

    2015-11-01

    Periodic lines formed by continuous strings of periodic points are key organizing entities in the Lagrangian flow topology of certain three-dimensional (3D) time-periodic flows. Such lines generically consist of elliptic and/or hyperbolic points and thus give rise to 3D flow topologies made up of families of concentric closed trajectories embedded in chaotic regions. Weak perturbation destroys the periodic lines and causes said trajectories to coalesce into families of concentric tubes. However, emergence of isolated periodic points near the disintegrating periodic lines and/or partitioning of the original lines into elliptic and hyperbolic segments interrupt the tube formation. This yields incomplete tubes that interact with the (chaotic) environment through their open ends, resulting in intricate and essentially 3D flow topologies These phenomena have been observed in various realistic flows yet the underlying mechanisms are to date only partially understood. This study deepens insight into the (perturbed) Lagrangian dynamics of these flows by way of a linearized representation of the equations of motion near the periodic lines. Predictions on the basis of this investigation are in full (qualitative) agreement with observed behavior in the actual flows

  4. Cell kinetics of differentiation of Na/sup +/-dependent hexose transport in a cultured renal epithelial cell line

    SciTech Connect

    Cook, J.S.; Weiss, E.R.

    1985-01-01

    Fully differentiated cells of the renal proximal tubule have the capability of taking up hexoses across their apical borders by transport coupled to the Na/sup +/-electrochemical gradient. This property is also found in postconfluent cultures of the cloned cell line LLC-PK/sub 1/, a morphologically polarized line of renal cells. Postconfluent cells develop the Na/sup +/-dependent capacity to transport hexoses at their apical surface. This function is not observable during the growth phase of the cultures. To analyze the developmental process at the cellular level a method has been derived to separate transporting cells, expressing the differentiated function, from nontransporting cells. The method is based on the swelling of the cells accompanying the uptake of the nonmetabolizable glucose analog alpha methylglucoside. The swollen cells have a lower buoyant density than the undifferentiated cells and may be separated from them on density gradients. Analysis of the distribution of cells on such gradients shows that after the cells reach confluence the undifferentiated subpopulation is recruited onto the differentiation pathway with a rate constant of 0.2 per day, that 5 to 7 days are required for a cell to traverse this pathway to the fully differentiated state, and that once the maximum uptake capacity is achieved the cells do not develop further.

  5. Transcriptional activation of vesicular monoamine transporter 2 in the pre-B cell line Ea3.123.

    PubMed Central

    Watson, F; Deavall, D G; Macro, J A; Kiernan, R; Dimaline, R

    1999-01-01

    Uptake and storage of monoamines in secretory granules is accomplished by vesicular monoamine transporters, and it is likely that vesicular monoamine transporter 2 (VMAT2) is important for histamine transport in vivo. In the present study we have used the pre-B-cell line Ea3.123 to investigate the mechanisms involved in the transcriptional activation of the VMAT2 gene. In Ea3.123 cells, VMAT2 mRNA abundance was increased following mobilization of intracellular calcium, and this increased mRNA expression was paralleled by changes in l-histidine decarboxylase mRNA, suggesting that VMAT2 may be responsible for sequestration of histamine into secretory vesicles in this cell line. We cloned the 5'-flanking region of the VMAT2 gene and determined its transcriptional start site by primer extension of rat VMAT2 mRNA. There was no TATA or TATA-like sequence upstream of this region; instead there were GC-rich elements, Ca2+/cAMP-response-element- and SP1-binding motifs. Approx. 900 bp upstream of the transcriptional start site was a purine-pyrimidine repeat sequence that may form a Z-DNA structure. A series of 5'-deletional VMAT2-promoter segments cloned upstream of a luciferase reporter were capable of driving transcription and indicated the presence of multiple regulatory elements, while stimulation with ionomycin or PMA resulted in an increased level of the transcriptional activity of the 5'-promoter segments studied. PMID:9882615

  6. Monte Carlo methods in ICF

    SciTech Connect

    Zimmerman, G.B.

    1997-06-24

    Monte Carlo methods appropriate to simulate the transport of x-rays, neutrons, ion and electrons in Inertial Confinement Fusion targets are described and analyzed. The Implicit Monte Carlo method of x-ray transport handles symmetry within indirect drive ICF hohlraums well, but can be improved 50X in efficiency by angular biasing the x-rays towards the fuel capsule. Accurate simulation of thermonuclear burns nd burn diagnostics involves detailed particle source spectra, charged particle ranges, inflight reaction kinematics, corrections for bulk and thermal Doppler effects and variance reduction to obtain adequate statistics for rare events. It is found that the effects of angular Coulomb scattering must be included in models of charged particle transport through heterogeneous materials.

  7. Dietary protein composition influences abundance of peptide and amino acid transporter messenger ribonucleic acid in the small intestine of 2 lines of broiler chicks.

    PubMed

    Gilbert, E R; Li, H; Emmerson, D A; Webb, K E; Wong, E A

    2010-08-01

    This study evaluated the effect of dietary protein composition on mRNA abundance of a peptide transporter (peptide transporter 1, PepT1), amino acid (AA) transporters [Na(+)-independent cationic and zwitterionic AA transporter (b(o,+)AT), excitatory AA transporter 3 (EAAT3), Na(+)-independent cationic and Na(+)-dependent neutral AA transporter 2 (y(+)LAT2), L-type AA transporter 1 (LAT1), and cationic AA transporter 1 (CAT1)], and a digestive enzyme (aminopeptidase N) in 2 lines (A and B) of broilers that differentially express PepT1 mRNA (line B > line A). From d 8 to 15 posthatch, birds were fed 1 of 3 diets. Protein sources included whey protein concentrate, a whey partial hydrolysate (WPH), or a mixture of free AA (AA) identical to the composition of whey. Quantities of mRNA were assayed by real-time PCR in the small intestine of males at d 8, 9, 11, 13, and 15. For all genes except LAT1, abundance of mRNA was greatest in line B birds that consumed the WPH diet (P < 0.006). When mRNA abundance was normalized to beta-actin quantities, this effect disappeared, demonstrating a generalized effect on gene expression in line B birds that consumed the hydrolysate. There was a greater villus height:crypt depth ratio (P < 0.05) in line B birds fed the WPH diet as compared with line A. In conclusion, line B birds, which express greater PepT1, displayed enhanced intestinal mucosal absorptive surface area and differential regulation of PepT1, AA transporters, and aminopeptidase N in response to dietary protein composition.

  8. Full-band Monte Carlo simulation of high-energy carrier transport in single photon avalanche diodes with multiplication layers made of InP, InAlAs, and GaAs

    NASA Astrophysics Data System (ADS)

    Dolgos, Denis; Meier, Hektor; Schenk, Andreas; Witzigmann, Bernd

    2012-05-01

    We investigate the high-energy charge dynamics of electrons and holes in the multiplication process of single photon avalanche diodes. The technologically important multiplication layer materials InP and In0.52Al0.48As, used in near infrared photon detectors, are analyzed and compared with GaAs. We use the full-band Monte Carlo technique to solve the Boltzmann transport equation which improves the state-of-the-art treatment of high-field carrier transport in the multiplication process. As a result of the computationally efficient treatment of the scattering rates and the parallel central processing unit power of modern computer clusters, the full-band Monte Carlo calculation of the breakdown characteristics has become feasible. The breakdown probability features a steeper rise versus the reverse bias for smaller multiplication layer widths for InP, In0.52Al0.48As, and GaAs. Both the time to avalanche breakdown and jitter decrease with shrinking size of the multiplication region for the three examined III-V semiconductors.

  9. CREB1 regulates glucose transport of glioma cell line U87 by targeting GLUT1.

    PubMed

    Chen, Jiaying; Zhang, Can; Mi, Yang; Chen, Fuxue; Du, Dongshu

    2017-06-23

    Glioma is stemmed from the glial cells in the brain, which is accounted for about 45% of all intracranial tumors. The characteristic of glioma is invasive growth, as well as there is no obvious boundary between normal brain tissue and glioma tissue, so it is difficult to resect completely with worst prognosis. The metabolism of glioma is following the Warburg effect. Previous researches have shown that GLUT1, as a glucose transporter carrier, affected the Warburg effect, but the molecular mechanism is not very clear. CREB1 (cAMP responsive element-binding protein1) is involved in various biological processes, and relevant studies confirmed that CREB1 protein regulated the expression of GLUT1, thus mediating glucose transport in cells. Our experiments mainly reveal that the CREB1 could affect glucose transport in glioma cells by regulating the expression of GLUT1, which controlled the metabolism of glioma and affected the progression of glioma.

  10. Transepithelial transport efficiency of bovine collagen hydrolysates in a human Caco-2 cell line model.

    PubMed

    Feng, Mengmeng; Betti, Mirko

    2017-06-01

    Collagen was extracted from raw bovine hide and hydrolyzed by one of three enzymes - Alcalase, Flavourzyme, or trypsin - or by using a combination of two or three of these enzymes. The Alcalase-containing enzymatic hydrolysis treatments generated a greater proportion of hydrolysates with molecular weight (MW) <2kDa (79.8-82.7%). Flavourzyme-containing hydrolysis treatments exhibited the greatest proportion of free amino acids (686-740nmol/mg). The hydrolysates were then subjected to a simulated gastrointestinal (GI) digestion, and transport studies were conducted using a Caco-2 cell model. Due to the lower MW profile, the hydrolyzed collagen showed greater resistance to GI digestion and greater transport efficiency than the unhydrolyzed collagen control. Hydrolysates from a dual enzyme mixture - the Alcalase/Flavourzyme combination - generated the greatest transport efficiency across Caco-2 cell monolayers (21.4%), two-fold more than that of the collagen control. Copyright © 2016 Elsevier Ltd. All rights reserved.

  11. Regulation of membrane transport and metabolism in the HT29 human colonic adenocarcinoma cell line

    SciTech Connect

    Franklin, C.C.

    1989-01-01

    The effects of insulin on glucose transport and metabolism were examined in cultured HT29 human colonic adenocarcinoma cells. The presence of glucose transporters was verified by D-glucose displaceable ({sup 3}H) cytochalasin B binding. Moreover, two classes of insulin binding sites were detected in radioligand binding experiments. Despite the presence of both glucose transporters and insulin receptors, insulin failed to stimulate glucose transport. However, insulin was found to activate glycolysis. These findings suggest that insulin directly influences substrate utilization through the glycolytic pathway in HT29 cells without activating the glucose transport pathway. A Na{sup +}/K{sup +}/Cl{sup {minus}} cotransport pathway was also detected in HT29 cells using {sup 86}Rb{sup +} as a K{sup +} congener. The identity of this pathway as a Na{sup +}/K{sup +}/Cl{sup {minus}} cotransporter has been deduced from the following findings: (1) {sup 86}Rb{sup +} influx was inhibited by loop diuretics, (2) {sup 86}Rb{sup +} influx ceased in the absence of any one of the transported ions, and (3) cotransport exhibited a stoichiometry approaching 1Na{sup +}:1K{sup +}:2Cl{sup {minus}}. Na{sup +}/K{sup +}/Cl{sup {minus}} cotransport was found to be exquisitely sensitive to cellular ATP and cyclic AMP levels. These results suggest that HT29 cells contain a Na{sup +}/K{sup +}/Cl{sup {minus}} cotransport pathway that can be regulated by the second messenger cyclic AMP and is highly sensitive to the metabolic state of the cell. The involvement of protein kinase C in the regulation of Na{sup +}/K{sup +}/Cl{sup {minus}} cotransport was also investigated. Phorbol 12-myristate 13-acetate (PMA), which stimulated protein kinase C activity, produced a transient increase in cotransport followed by a near abolition of cotransport by 2 h.

  12. Altered glycaemia differentially modulates efflux transporter expression and activity in hCMEC/D3 cell line.

    PubMed

    Sajja, Ravi K; Cucullo, Luca

    2015-06-26

    The unique phenotype of blood-brain barrier (BBB) endothelium is partly maintained by abundant expression of ATP-binding cassette superfamily of efflux transporters that strictly restrict the CNS access to toxic substances including xenobiotics in circulation. Previously, we have shown that diabetes-related altered glycemic conditions differentially affect and compromise BBB integrity. However, the impact of diabetes on BBB efflux transporters is less understood. In this study, we examined the effects of single or repeated episodes of hypo-and hyperglycemia on major BBB efflux transporters expression/function in human cerebromicrovascular endothelial cell line (hCMEC/D3). Cells were exposed to normal (5.5 mM), hypo (2.2 mM) or hyper (25 or 35 mM)-glycemic media containing D-glucose for 12h (acute) or two 3h episodes/day of hypo- or hyperglycemia with an intercalated 2h normalglycemic exposure for 3 days ("glycemic variability", see Methods). Acute hypoglycemic exposure (12h) up-regulated BBB endothelial mRNA and protein expression of P-glycoprotein, BCRP and other multidrug resistance associated proteins (MRP1 and 4) paralleled by an increase in transporter-specific efflux activity (∼ 2-fold vs. control). Although, 12h hyperglycemia did not affect the efflux transporter expression (except for MRP4), a significant increase in BCRP activity was observed. By contrast, DNA microarray data revealed that repeated hyperglycemic episodes (but not hypoglycemia) significantly up-regulate P-glycoprotein expression and activity. Thus, this study suggests a differential impact of altered glycemic conditions on major BBB drug efflux transporters expression/function, sensitive to the length of exposure (acute vs. repeated), with an implication for altered CNS drug disposition in diabetic population.

  13. Human Immunodeficiency Virus Protease Inhibitors Serve as Substrates for Multidrug Transporter Proteins MDR1 and MRP1 but Retain Antiviral Efficacy in Cell Lines Expressing These Transporters

    PubMed Central

    Srinivas, Ranga V.; Middlemas, David; Flynn, Pat; Fridland, Arnold

    1998-01-01

    The human immunodeficiency virus type 1 (HIV-1) protease inhibitors (PIs)—saquinavir, ritonavir, nelfinavir, and indinavir—interact with the ABC-type multidrug transporter proteins MDR1 and MRP1 in CEM T-lymphocytic cell lines. Calcein fluorescence was significantly enhanced in MDR1+ CEM/VBL100 and MRP1+ CEM/VM-1-5 cells incubated in the presence of various HIV PIs and calcein acetoxymethyl ester. HIV PIs also enhanced the cytotoxic activity of doxorubicin, a known substrate for MDR1 and MRP1, in both VBL100 and VM-1-5 CEM lines. Saquinavir, ritonavir, and nelfinavir enhanced doxorubicin toxicity in CEM/VBL100 cells by approximately three- to sevenfold. Saquinavir and ritonavir also enhanced doxorubicin toxicity in CEM/VM-1-5 cells. HIV-1 replication was effectively inhibited by the various PIs in all of the cell lines, and the 90% inhibitory concentration for a given compound was comparable between the different cell types. Therefore, overexpression of MDR1 or MRP1 by T lymphocytes is not likely to limit the antiviral efficacy of HIV PI therapy. PMID:9835508

  14. Cyclic AMP, membrane transport and cell division. I. Effects of various chemicals on cyclic AMP levels and rate of transport of neucleosides, hypoxanthine and deoxyglucose in several lines of cultured cells.

    PubMed

    Sheppard, J R; Plagemann, P G

    1975-04-01

    Nutrient transport rates and cyclic AMP levels have been implicated in the regulation of cell proliferation. In the present study, however, changes in intracellular cyclic AMP level in several lines of cultured cells (normal 3T3 and SV40 and polyomavirus-transformed 3T3 cells; 3T6, C6 GLIOMA, MOUSE L, and Novikoff rat hepatoma cells) by treatment with papaverine, prostaglandine E1 or isoproterenol did not correlate with the inhibition of the uridine, hypoxanthine or deoxyglucose transport rates by these chemicals. Transport inhibitions by above chemicals or Persantin or Cytochalasin B occurred in most cell lines in the absence of any measurable change in intracellular cyclic AMP concentration. Furthermore, treatment of several cell lines with 1 mM dibutyryl cyclic AMP had no immediate effect on the transport of uridine, thymidine or deoxyglucose, although the transport capacity of the cells for uridine and thymidine, but not that for deoxyglucose, decreased progressively with time of treatment. We also observed that the uridine transport system of all cell lines derived from 3T3 cells and the hypoxanthine transport system of L cells exhibited high degrees of resistance to inhibition by the various chemicals. On the other hand, deoxyglucose transport was inhibited to about the same extent by these chemicals in all the cell lines investigated.

  15. Expression and adaptive regulation of amino acid transport system A in a placental cell line under amino acid restriction.

    PubMed

    Jones, H N; Ashworth, C J; Page, K R; McArdle, H J

    2006-05-01

    Trans-placental transport of amino acids is vital for the developing fetus. Using the BeWo cell line as a placental model, we investigated the effect of restricting amino acid availability on amino acid transport system type A. BeWo cells were cultured either in amino acid-depleted (without non-essential amino acids) or control media for 1, 3, 5 or 6 h. System A function was analysed using alpha(methyl-amino)isobutyric acid (MeAIB) transcellular transport studies. Transporter (sodium coupled neutral amino acid transporter (SNAT1/2)) expression was analysed at mRNA and protein level by Northern and Western blotting respectively. Localisation was carried out using immunocytochemistry. MeAIB transcellular transport was significantly (P < 0.05) increased by incubation of the cells in amino acid-depleted medium for 1 h, and longer incubation times caused further increases in the rate of transfer. However, the initial response was not accompanied by an increase in SNAT2 mRNA; this occurred only after 3 h and further increased for the rest of the 6-h incubation. Similarly, it took several hours for a significant increase in SNAT2 protein expression. In contrast, relocalisation of existing SNAT2 transporters occurred within 30 min of amino acid restriction and continued throughout the 6-h incubation. When the cells were incubated in medium with even lower amino acid levels (without non-essential plus 0.5 x essential amino acids), SNAT2 mRNA levels showed further significant (P < 0.0001) up-regulation. However, incubation of cells in depleted medium for 6 h caused a significant (P = 0.014) decrease in the expression of SNAT1 mRNA. System L type amino acid transporter 2 (LAT2) expression was not changed by amino acid restriction, indicating that the responses seen in the system A transporters were not a general cell response. These data have shown that placental cells adapt in vitro to nutritional stress and have identified the physiological, biochemical and genomic

  16. Different Behavioral and Physiological Response in two Genetic Lines of Laying Hens Following Transportation

    USDA-ARS?s Scientific Manuscript database

    Physiological and behavioral response to transportation stress were examined in chickens selected for high group productivity and survivability (HGPS) resulting from reduced cannibalism and flightiness in colony cages and in chickens from Dekalb XL (DXL) commercial strain. At 13 wks of age, 96 pulle...

  17. 8 CFR 241.24 - Notice to transportation line of alien's exclusion.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... alien for an additional 7 days beyond the date of the deportation/exclusion order. If, after the third day of this additional 7-day period, the carrier has not made all the necessary transportation arrangements for the excluded alien to be returned to his or her point of embarkation by the end of the...

  18. 8 CFR 241.9 - Notice to transportation line of alien's removal.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... the alien for an additional 7 days beyond the date of the removal order. If, after the third day of this additional 7-day period, the carrier has not made all the necessary transportation arrangements for the alien to be returned to his or her point of embarkation by the end of the additional 7-day...

  19. Structural model of FeoB, the iron transporter from Pseudomonas aeruginosa, predicts a cysteine lined, GTP-gated pore

    PubMed Central

    Seyedmohammad, Saeed; Fuentealba, Natalia Alveal; Marriott, Robert A.J.; Goetze, Tom A.; Edwardson, J. Michael; Barrera, Nelson P.; Venter, Henrietta

    2016-01-01

    Iron is essential for the survival and virulence of pathogenic bacteria. The FeoB transporter allows the bacterial cell to acquire ferrous iron from its environment, making it an excellent drug target in intractable pathogens. The protein consists of an N-terminal GTP-binding domain and a C-terminal membrane domain. Despite the availability of X-ray crystal structures of the N-terminal domain, many aspects of the structure and function of FeoB remain unclear, such as the structure of the membrane domain, the oligomeric state of the protein, the molecular mechanism of iron transport, and how this is coupled to GTP hydrolysis at the N-terminal domain. In the present study, we describe the first homology model of FeoB. Due to the lack of sequence homology between FeoB and other transporters, the structures of four different proteins were used as templates to generate the homology model of full-length FeoB, which predicts a trimeric structure. We confirmed this trimeric structure by both blue-native-PAGE (BN-PAGE) and AFM. According to our model, the membrane domain of the trimeric protein forms a central pore lined by highly conserved cysteine residues. This pore aligns with a central pore in the N-terminal GTPase domain (G-domain) lined by aspartate residues. Biochemical analysis of FeoB from Pseudomonas aeruginosa further reveals a putative iron sensor domain that could connect GTP binding/hydrolysis to the opening of the pore. These results indicate that FeoB might not act as a transporter, but rather as a GTP-gated channel. PMID:26934982

  20. Paracellular Transport through Healthy and Cystic Fibrosis Bronchial Epithelial Cell Lines – Do We Have a Proper Model?

    PubMed Central

    Weiser, Nelly; Kusche-Vihrog, Kristina; Günzel, Dorothee; Schillers, Hermann

    2014-01-01

    It has been reported recently that the cystic fibrosis transmembrane conductance regulator (CFTR) besides transcellular chloride transport, also controls the paracellular permeability of bronchial epithelium. The aim of this study was to test whether overexpressing wtCFTR solely regulates paracellular permeability of cell monolayers. To answer this question we used a CFBE41o– cell line transfected with wtCFTR or mutant F508del-CFTR and compered them with parental line and healthy 16HBE14o– cells. Transepithelial electrical resistance (TER) and paracellular fluorescein flux were measured under control and CFTR-stimulating conditions. CFTR stimulation significant decreased TER in 16HBE14o– and also in CFBE41o– cells transfected with wtCFTR. In contrast, TER increased upon stimulation in CFBE41o– cells and CFBE41o– cells transfected with F508del-CFTR. Under non-stimulated conditions, all four cell lines had similar paracellular fluorescein flux. Stimulation increased only the paracellular permeability of the 16HBE14o– cell monolayers. We observed that 16HBE14o– cells were significantly smaller and showed a different structure of cell-cell contacts than CFBE41o– and its overexpressing clones. Consequently, 16HBE14o– cells have about 80% more cell-cell contacts through which electrical current and solutes can leak. Also tight junction protein composition is different in ‘healthy’ 16HBE14o– cells compared to ‘cystic fibrosis’ CFBE41o– cells. We found that claudin-3 expression was considerably stronger in 16HBE14o– cells than in the three CFBE41o– cell clones and thus independent of the presence of functional CFTR. Together, CFBE41o– cell line transfection with wtCFTR modifies transcellular conductance, but not the paracellular permeability. We conclude that CFTR overexpression is not sufficient to fully reconstitute transport in CF bronchial epithelium. Hence, it is not recommended to use those cell lines to study CFTR

  1. Walking the Line between Reality and Fiction in Online Spaces: Understanding the Effects of Narrative Transportation

    ERIC Educational Resources Information Center

    Gretter, Sarah; Yadav, Aman; Gleason, Benjamin

    2017-01-01

    Recent contentions about "fake news" and misinformation online has shed light on the critical need for media literacy at a global scale. Indeed, digital stories are one of the main forms of communication in the 21st century through blogs, videos-sharing websites, forums, or social networks. However, the line between facts and fiction can…

  2. Space charge compensation in the Linac4 low energy beam transport line with negative hydrogen ions.

    PubMed

    Valerio-Lizarraga, Cristhian A; Lallement, Jean-Baptiste; Leon-Monzon, Ildefonso; Lettry, Jacques; Midttun, Øystein; Scrivens, Richard

    2014-02-01

    The space charge effect of low energy, unbunched ion beams can be compensated by the trapping of ions or electrons into the beam potential. This has been studied for the 45 keV negative hydrogen ion beam in the CERN Linac4 Low Energy Beam Transport using the package IBSimu [T. Kalvas et al., Rev. Sci. Instrum. 81, 02B703 (2010)], which allows the space charge calculation of the particle trajectories. The results of the beam simulations will be compared to emittance measurements of an H(-) beam at the CERN Linac4 3 MeV test stand, where the injection of hydrogen gas directly into the beam transport region has been used to modify the space charge compensation degree.

  3. Space charge compensation in the Linac4 low energy beam transport line with negative hydrogen ions

    SciTech Connect

    Valerio-Lizarraga, Cristhian A.; Lallement, Jean-Baptiste; Lettry, Jacques; Scrivens, Richard; Leon-Monzon, Ildefonso; Midttun, Øystein

    2014-02-15

    The space charge effect of low energy, unbunched ion beams can be compensated by the trapping of ions or electrons into the beam potential. This has been studied for the 45 keV negative hydrogen ion beam in the CERN Linac4 Low Energy Beam Transport using the package IBSimu [T. Kalvas et al., Rev. Sci. Instrum. 81, 02B703 (2010)], which allows the space charge calculation of the particle trajectories. The results of the beam simulations will be compared to emittance measurements of an H{sup −} beam at the CERN Linac4 3 MeV test stand, where the injection of hydrogen gas directly into the beam transport region has been used to modify the space charge compensation degree.

  4. In-line Particulate Transport and Dispersion Modeling Using the Regional Atmospheric Modeling System (RAMS)

    DTIC Science & Technology

    2005-03-01

    hydrometeor category can grow in size through several different processes such as collision coalescence This remains the same Conversion from one hydro ...Model ( WRF ). Use of the GDAS final (FNL) analysis requires the application of a GRIB-to-RALPH format converter, fdgrib, which is available from the same...Visualization Utilities SCIPUFF - Second-order Closure Integrated Puff T&D - Transport and Dispersion WRF - Weather Research and Forecasting Model

  5. Analysis of sediment transport pattern along the coastal line of the Curonian Spit

    NASA Astrophysics Data System (ADS)

    Kovaleva, Olga; Chubarenko, Boris

    2016-04-01

    Among a wide range of approaches for determination of long-shore sediment transport direction changes in grain-size parameters (mean, sorting, skewness) of beach deposits use not so often. There are two trends in alongshore distributions of surface sediments grain-size parameters which may indicate an alongshore transport (McLaren, Bowles, 1985): (a) sediments become finer, sorting and skewness decreases; (b) sediments become coarser, sorting decreases and skewness increases. Over all more than 150 sand samples were collected along the coastline of the Curonian Spit during 2011, 2014 and 2015 summer seasons. The grain-size analysis of the samples were carried out and mentioned above grain-size parameters were calculated. Shore segments with different trends were identified using a running 9-nodes window, level of significance of trend analysis was estimated. Results of the method testing reflected different sediment transportation patterns for different years. However for other areas such as embayed coasts at the Gulf of Finland this method showed presence of one-directed longshore sediment flow. As a result it is possible to say that for straightened coasts such as the Curonian Spit the method allows to determine the alongshore flux pattern formed by the last significant storm event, i.e. to estimate an actual consequence of winds and waves influence in the studied area and can not be used for describing multiannual longshore sediment transport. The work was financed by the Russian Scientific Fund (grant 14-37-00047) and by the Russian Foundation for Basic Research, research projects No. 14-35-50130 and No. 15-35-50613.

  6. Transport characteristics of grepafloxacin and levofloxacin in the human intestinal cell line Caco-2.

    PubMed

    Yamaguchi, H; Yano, I; Saito, H; Inui, K

    2001-11-23

    Transport characteristics of grepafloxacin and levofloxacin across the apical membrane of Caco-2 cells were examined. Both grepafloxacin and levofloxacin uptakes increased rapidly, and were temperature-dependent. Grepafloxacin and levofloxacin uptakes showed concentration-dependent saturation with Michaelis constants of 3.9 and 9.3 mM, respectively. Uptake of grepafloxacin and levofloxacin increased in Cl(-)-free and ATP depleted conditions, suggesting the involvement of an efflux transport system different from the uptake mechanism. However, cyclosporin A, a typical inhibitor of P-glycoprotein, did not affect the uptake of these drugs. Unlabeled grepafloxacin, unlabeled levofloxacin and quinidine inhibited the uptake of grepafloxacin and levofloxacin under Cl(-)-free conditions. Tetraethylammonium, cimetidine, p-aminohippurate, probenecid, amino acids, beta-lactam antibiotic or monocarboxylates did not inhibit the uptake of grepafloxacin and levofloxacin under the same conditions. In conclusion, our results suggested that grepafloxacin and levofloxacin uptakes were mediated by a specific transport system distinct from those for organic cations and anions, amino acids, dipeptides and monocarboxylates.

  7. Verification of Monte Carlo transport codes against measured small angle p-, d-, and t-emission in carbon fragmentation at 600 MeV/nucleon

    SciTech Connect

    Abramov, B. M.; Alekseev, P. N.; Borodin, Yu. A.; Bulychjov, S. A.; Dukhovskoy, I. A.; Krutenkova, A. P.; Martemianov, M. A.; Matsyuk, M. A.; Turdakina, E. N.; Khanov, A. I.; Mashnik, Stepan Georgievich

    2015-02-03

    Momentum spectra of hydrogen isotopes have been measured at 3.5° from 12C fragmentation on a Be target. Momentum spectra cover both the region of fragmentation maximum and the cumulative region. Differential cross sections span five orders of magnitude. The data are compared to predictions of four Monte Carlo codes: QMD, LAQGSM, BC, and INCL++. There are large differences between the data and predictions of some models in the high momentum region. The INCL++ code gives the best and almost perfect description of the data.

  8. Calculs Monte Carlo en transport d'energie pour le calcul de la dose en radiotherapie sur plateforme graphique hautement parallele

    NASA Astrophysics Data System (ADS)

    Hissoiny, Sami

    Dose calculation is a central part of treatment planning. The dose calculation must be 1) accurate so that the medical physicists and the radio-oncologists can make a decision based on results close to reality and 2) fast enough to allow a routine use of dose calculation. The compromise between these two factors in opposition gave way to the creation of several dose calculation algorithms, from the most approximate and fast to the most accurate and slow. The most accurate of these algorithms is the Monte Carlo method, since it is based on basic physical principles. Since 2007, a new computing platform gains popularity in the scientific computing community: the graphics processor unit (GPU). The hardware platform exists since before 2007 and certain scientific computations were already carried out on the GPU. Year 2007, on the other hand, marks the arrival of the CUDA programming language which makes it possible to disregard graphic contexts to program the GPU. The GPU is a massively parallel computing platform and is adapted to data parallel algorithms. This thesis aims at knowing how to maximize the use of a graphics processing unit (GPU) to speed up the execution of a Monte Carlo simulation for radiotherapy dose calculation. To answer this question, the GPUMCD platform was developed. GPUMCD implements the simulation of a coupled photon-electron Monte Carlo simulation and is carried out completely on the GPU. The first objective of this thesis is to evaluate this method for a calculation in external radiotherapy. Simple monoenergetic sources and phantoms in layers are used. A comparison with the EGSnrc platform and DPM is carried out. GPUMCD is within a gamma criteria of 2%-2mm against EGSnrc while being at least 1200x faster than EGSnrc and 250x faster than DPM. The second objective consists in the evaluation of the platform for brachytherapy calculation. Complex sources based on the geometry and the energy spectrum of real sources are used inside a TG-43

  9. A systematic approach to advanced cockpit warning systems for air transport operations: Line pilot preferences

    NASA Technical Reports Server (NTRS)

    Williams, D. H.; Simpson, C. A.

    1976-01-01

    Line pilots (fifty captains, first officers, and flight engineers) from 8 different airlines were administered a structured questionnaire relating to future warning system design and solutions to current warning system problems. This was followed by a semantic differential to obtain a factor analysis of 18 different cockpit warning signals on scales such as informative/distracting, annoying/soothing. Half the pilots received a demonstration of the experimental text and voice synthesizer warning systems before answering the questionnaire and the semantic differential. A control group answered the questionnaire and the semantic differential first, thus providing a check for the stability of pilot preferences with and without actual exposure to experimental systems. Generally, the preference data obtained revealed much consistency and strong agreement among line pilots concerning advance cockpit warning system design.

  10. Going below the line: creating transportable brands for Australia's dark market.

    PubMed

    Carter, S M

    2003-12-01

    To investigate non-point-of-sale cigarette marketing in Australia, one of the "darkest" markets in the world. Analysis of 172 tobacco industry documents. The tobacco industry has continued to market their products despite severe restrictions on legal marketing activity. They made careful plans to circumvent regulation well in advance. In preparation for bans, they chose and strengthened existing brands to enable their continued success in a dark market and prepared the consumer for bans by increasing their spending on below the line activities. Bans reduced the industry's effectiveness and efficiency. After bans new brand launches stopped: instead key existing brands were strengthened via alterations to the product, line extensions, and stretching loopholes in the legislation as far as possible. In line with the general trend towards integrated marketing, a range of activities have been used in combination, including guerrilla marketing, advertising in imported international magazines, altering the pack, sponsorships, brand stretching, event promotions, lifestyle premiums, and the development of corporate websites. The tobacco industry acknowledges that marketing restrictions have an impact, validating their continued use in tobacco control. The industry is extremely creative in circumventing these marketing restrictions, requiring tobacco marketing regulations to be informed by marketing expertise, regularly updated, and to adopt the broadest possible scope. Tobacco control advocates, particularly those communicating with young people, could learn from the creativity of the tobacco industry.

  11. Going below the line: creating transportable brands for Australia's dark market

    PubMed Central

    Carter, S

    2003-01-01

    Objective: To investigate non-point-of-sale cigarette marketing in Australia, one of the "darkest" markets in the world. Design: Analysis of 172 tobacco industry documents. Results: The tobacco industry has continued to market their products despite severe restrictions on legal marketing activity. They made careful plans to circumvent regulation well in advance. In preparation for bans, they chose and strengthened existing brands to enable their continued success in a dark market and prepared the consumer for bans by increasing their spending on below the line activities. Bans reduced the industry's effectiveness and efficiency. After bans new brand launches stopped: instead key existing brands were strengthened via alterations to the product, line extensions, and stretching loopholes in the legislation as far as possible. In line with the general trend towards integrated marketing, a range of activities have been used in combination, including guerrilla marketing, advertising in imported international magazines, altering the pack, sponsorships, brand stretching, event promotions, lifestyle premiums, and the development of corporate websites. Conclusions: The tobacco industry acknowledges that marketing restrictions have an impact, validating their continued use in tobacco control. The industry is extremely creative in circumventing these marketing restrictions, requiring tobacco marketing regulations to be informed by marketing expertise, regularly updated, and to adopt the broadest possible scope. Tobacco control advocates, particularly those communicating with young people, could learn from the creativity of the tobacco industry. PMID:14645953

  12. TRANSPORT

    EPA Science Inventory

    Presentation outline: transport principles, effective solubility; gasoline composition; and field examples (plume diving).
    Presentation conclusions: MTBE transport follows from - phyiscal and chemical properties and hydrology. Field examples show: MTBE plumes > benzene plu...

  13. High intensity proton beam transportation through fringe field of 70 MeV compact cyclotron to beam line targets

    NASA Astrophysics Data System (ADS)

    Zhang, Xu; Li, Ming; Wei, Sumin; Xing, Jiansheng; Hu, Yueming; Johnson, Richard R.; Piazza, Leandro; Ryjkov, Vladimir

    2016-06-01

    From the stripping points, the high intensity proton beam of a compact cyclotron travels through the fringe field area of the machine to the combination magnet. Starting from there the beams with various energy is transferred to the switching magnet for distribution to the beam line targets. In the design of the extraction and transport system for the compact proton cyclotron facilities, such as the 70 MeV in France and the 100 MeV in China, the space charge effect as the beam crosses the fringe field has not been previously considered; neither has the impact on transverse beam envelope coupled from the longitudinal direction. Those have been concerned much more with the higher beam-power because of the beam loss problem. In this paper, based on the mapping data of 70 MeV cyclotron including the fringe field by BEST Cyclotron Inc (BEST) and combination magnet field by China Institute of Atomic Energy (CIAE), the beam extraction and transport are investigated for the 70 MeV cyclotron used on the SPES project at Istituto Nazionale di Fisica Nucleare, Laboratori Nazionali di Legnaro (INFN-LNL). The study includes the space charge effect and longitudinal and transverse coupling mentioned above, as well as the matching of beam optics using the beam line for medical isotope production as an example. In addition, the designs of the ±45° switching magnets and the 60° bending magnet for the extracted beam with the energy from 35 MeV to 70 MeV have been made. Parts of the construction and field measurements of those magnets have been done as well. The current result shows that, the design considers the complexity of the compact cyclotron extraction area and fits the requirements of the extraction and transport for high intensity proton beam, especially at mA intensity levels.

  14. Transport mechanism for L-lactic acid in human myocytes using human prototypic embryonal rhabdomyosarcoma cell line (RD cells).

    PubMed

    Kobayashi, Masaki; Fujita, Itaru; Itagaki, Shirou; Hirano, Takeshi; Iseki, Ken

    2005-07-01

    Monocarboxylate transporter (MCT), which cotransport L-lactic acid and protons across cell membranes, are important for regulation of muscle pH. However, it has not been demonstrated in detail whether MCT isoform contribute to the transport of L-lactic acid in skeletal muscle. The aim of this study was to characterize L-lactic acid transport using an human rhabdomyosarcoma (RD) cell line as a model of human skeletal muscle. mRNAs of MCT 1, 2 and 4 were found to be expressed in RD cells. The [14C] L-lactic acid uptake was concentration-dependent with a Km of 1.19 mM. This Km value was comparable to its Km values for MCT1 or MCT2. MCT1 mRNA was found to be present markedly greater than that MCT2. Therefore, MCT1 most probably acts on L-lactic acid uptake at RD cells. [14C] L-Lactic acid efflux in RD cells was inhibited by alpha-cyano-4-hydroxycinnamate (CHC) but not by butyric acid, a substrate of MCT1. Accordingly, MCT2 or MCT4 is responsible for L-lactic acid efflux by RD cells. MCT4 mRNA was found to be present significantly greater than that MCT2. We conclude that MCT1 is responsible for L-lactic acid uptake and L-lactic acid efflux is mediated by MCT4 in RD cells.

  15. Extending Observational Volume and Heat Transport Records of the Indonesian Throughflow Using Repeat Expendable Bathythermograph (XBT) Lines

    NASA Astrophysics Data System (ADS)

    Vranes, K.; Gordon, A.; Susanto, D.

    2004-12-01

    The Indonesian Throughflow (ITF) is the only tropical link between ocean basins on the planet, carrying roughly 10\\times 106 m3/s (10 Sv) of thermocline water from the Pacific Ocean to the Indian Ocean. The ITF varies on interannual and decadal time scales, forced by ENSO, the Asian monsoons and interannual climate variability in the Indian Ocean basin. To date, direct current measurements of the ITF have been limited to two years duration, which is not enough to fully describe this Pacific-to-Indian connection on long-period scales. Recent measurements taken from December 1996 to July 1998 in the Makassar Strait of the Indonesian seas provide a detailed vertical and temporal picture of the ITF through its main channel, but only provide 1.7 years of record. Temperature data from a repeat expendable bathythermograph (XBT) program have been collected between Shark Bay, Australia and Sunda Strait between Sumatra and Java, Indonesia since 1982. This repeat line is perpendicular to the path of ITF outflow into the Indian Ocean South Equatorial Current at 12ºS, allowing for geostrophic calculations of ITF volume transport into the Indian Ocean. A geostrophic transport time series is constructed from the Australia-Indonesia repeat XBT line and compared to the Makassar time series, finding excellent correlations for the 1.7-year duration of the Makassar series. It is inferred that the repeat XBT line may serve as an appropriate proxy record for interior ITF flow, extending the observational record of the ITF for at least two decades. The twenty-year record of ITF flow is most strongly influenced by ENSO, but is significantly influenced by other climatic process.

  16. Design and Performance Test of Superconducting Transport Solenoid for D-Line at J-PARC Muon Science Facility

    NASA Astrophysics Data System (ADS)

    Tanaka, Yasuyuki; Semba, Tomoyuki; Nakajima, Shotaro; Hagiwara, Yoshiaki; Kido, Shuichi; Murata, Yukihiro; Sasaki, Ken-ichi; Shimomura, Koichiro; Kawamura, Naritoshi; Strasser, Patrick; Makida, Yasuhiro; Ohhata, Hirokatsu; Kurosawa, Noriyuki; Miyake, Yasuhiro

    2017-09-01

    A superconducting transport solenoid for Decay Muon Line (D-line) at J-PARC Muon Science Facility was newly designed and manufactured. It was designed to generate a magnetic field in relatively large region (warm bore diameter 0.2 m), while keeping the same outer dimensions, connection interfaces to the existing refrigerator and the power supply of the previous machine [1-3]. Major changes of both solenoids are the reduction of the central magnetic field, the equipment of a warm bore and the adoption of the high Tc current leads. After the installation to the beam line, the initial cooling test, the excitation test and the emergency shutdown test at the rated current were conducted by KEK in order to confirm cryogenic and magnetic performance. These tests were successfully performed with no damege and indicated the solenoid was precisely manufactured and fulfilled the requirements. The solenoid has been under operation since July, 2015. This report describes the design, the manufacturing process, the magnetic field measurement at room temperature and the results of performance tests conducted by KEK.

  17. Filament wound metal lined propellant tanks for future Earth-to-orbit transports

    NASA Technical Reports Server (NTRS)

    Macconochie, Ian O.; Davis, Robert B.; Freeman, William T., Jr.

    1988-01-01

    For future Earth-to-orbit transport vehicles, reusability and lighter weights are sought for the main propellant tanks. To achieve this, a filament wound tank with a metal liner and an intermediate layer of foam-filled honeycomb is proposed. A hydrogen tank is used as an example. To accommodate mismatches in the expansion of liner and overwrap a design is proposed wherin the liner is configured so that the extension of the liner under pressure matches the expected contraction of the same liner due to the presence of a cryogen. In operation, the liner is pressurized at a rate such that the pressure strain matches the contraction due to decrease in temperature. As an alternate approach, compressive pre-stress is placed in the liner such that it will not separate from the overwrap. A finite element program is used to show stresses in the liner and overwrap for various tank pressures for the pre-stressed liner concept. A fracture mechanics analysis is made of the liners to determine tank life. The tank concept shown has a similar weight to the Shuttle external hydrogen tank, but the filament wound tank is expected to be reusable. Integration of the propellant tanks into a future transport vehicle is discussed.

  18. Anomalous, quasilinear, and percolative regimes for magnetic-field-line transport in axially symmetric turbulence

    PubMed

    Zimbardo; Veltri; Pommois

    2000-02-01

    We studied a magnetic turbulence axisymmetric around the unperturbed magnetic field for cases having different ratios l( ||)/l( perpendicular). We find, in addition to the fact that a higher fluctuation level deltaB/B(0) makes the system more stochastic, that by increasing the ratio l( ||)/l( perpendicular) at fixed deltaB/B(0), the stochasticity increases. It appears that the different transport regimes can be organized in terms of the Kubo number R=(deltaB/B(0))(l( ||)/l( perpendicular)). The simulation results are compared with the two analytical limits, that is the percolative limit and the quasilinear limit. When R<1 weak chaos, closed magnetic surfaces, and anomalous transport regimes are found. When R approximately 1 the diffusion regime is Gaussian, and the quasilinear scaling of the diffusion coefficient D( perpendicular) approximately (deltaB/B(0))(2) is recovered. Finally, for R>1 the percolation scaling of the diffusion coefficient D( perpendicular) approximately (deltaB/B(0))(0.7) is obtained.

  19. Comparison of Two Accelerators for Monte Carlo Radiation Transport Calculations, NVIDIA Tesla M2090 GPU and Intel Xeon Phi 5110p Coprocessor: A Case Study for X-ray CT Imaging Dose Calculation

    NASA Astrophysics Data System (ADS)

    Liu, Tianyu; Xu, X. George; Carothers, Christopher D.

    2014-06-01

    Hardware accelerators are currently becoming increasingly important in boosting high performance computing sys- tems. In this study, we tested the performance of two accelerator models, NVIDIA Tesla M2090 GPU and Intel Xeon Phi 5110p coprocessor, using a new Monte Carlo photon transport package called ARCHER-CT we have developed for fast CT imaging dose calculation. The package contains three code variants, ARCHER - CTCPU, ARCHER - CTGPU and ARCHER - CTCOP to run in parallel on the multi-core CPU, GPU and coprocessor architectures respectively. A detailed GE LightSpeed Multi-Detector Computed Tomography (MDCT) scanner model and a family of voxel patient phantoms were included in the code to calculate absorbed dose to radiosensitive organs under specified scan protocols. The results from ARCHER agreed well with those from the production code Monte Carlo N-Particle eXtended (MCNPX). It was found that all the code variants were significantly faster than the parallel MCNPX running on 12 MPI processes, and that the GPU and coprocessor performed equally well, being 2.89~4.49 and 3.01~3.23 times faster than the parallel ARCHER - CTCPU running with 12 hyperthreads.

  20. Quantitative Kα line spectroscopy for energy transport in ultra-intense laser plasma interaction

    NASA Astrophysics Data System (ADS)

    Zhang, Z.; Nishimura, H.; Fujioka, S.; Arikawa, Y.; Nakai, M.; Chen, H.; Park, J.; Williams, G. J.; Ozaki, T.; Shiraga, H.; Kojima, S.; Johzaki, T.; Sunahara, A.; Miyanaga, N.; Kawanaka, J.; Nakata, Y.; Jitsuno, T.; Azechi, H.

    2016-03-01

    Absolute Ka line spectroscopy is proposed for studying laser-plasma interactions taking place in the cone-guided fast ignition targets. X-ray spectra ranging from 20 to 100 keV were quantitatively measured with a Laue spectrometer. The absolute sensitivities of the Laue spectrometer system were calibrated using pre-characterized laser-produced x-ray sources and radioisotopes. The integrated reflectivity for the crystal is in good agreement with predictions by an open c