Sample records for causap csar pedrocchi

  1. CSAR-web: a web server of contig scaffolding using algebraic rearrangements.

    PubMed

    Chen, Kun-Tze; Lu, Chin Lung

    2018-05-04

    CSAR-web is a web-based tool that allows the users to efficiently and accurately scaffold (i.e. order and orient) the contigs of a target draft genome based on a complete or incomplete reference genome from a related organism. It takes as input a target genome in multi-FASTA format and a reference genome in FASTA or multi-FASTA format, depending on whether the reference genome is complete or incomplete, respectively. In addition, it requires the users to choose either 'NUCmer on nucleotides' or 'PROmer on translated amino acids' for CSAR-web to identify conserved genomic markers (i.e. matched sequence regions) between the target and reference genomes, which are used by the rearrangement-based scaffolding algorithm in CSAR-web to order and orient the contigs of the target genome based on the reference genome. In the output page, CSAR-web displays its scaffolding result in a graphical mode (i.e. scalable dotplot) allowing the users to visually validate the correctness of scaffolded contigs and in a tabular mode allowing the users to view the details of scaffolds. CSAR-web is available online at http://genome.cs.nthu.edu.tw/CSAR-web.

  2. Application of the docking program SOL for CSAR benchmark.

    PubMed

    Sulimov, Alexey V; Kutov, Danil C; Oferkin, Igor V; Katkova, Ekaterina V; Sulimov, Vladimir B

    2013-08-26

    This paper is devoted to results obtained by the docking program SOL and the post-processing program DISCORE at the CSAR benchmark. SOL and DISCORE programs are described. SOL is the original docking program developed on the basis of the genetic algorithm, MMFF94 force field, rigid protein, precalculated energy grid including desolvation in the frame of simplified GB model, vdW, and electrostatic interactions and taking into account the ligand internal strain energy. An important SOL feature is the single- or multi-processor performance for up to hundreds of CPUs. DISCORE improves the binding energy scoring by the local energy optimization of the ligand docked pose and a simple linear regression on the base of available experimental data. The docking program SOL has demonstrated a good ability for correct ligand positioning in the active sites of the tested proteins in most cases of CSAR exercises. SOL and DISCORE have not demonstrated very exciting results on the protein-ligand binding free energy estimation. Nevertheless, for some target proteins, SOL and DISCORE were among the first in prediction of inhibition activity. Ways to improve SOL and DISCORE are discussed.

  3. First demonstration of in vivo mapping for regional brain monoacylglycerol lipase using PET with [11C]SAR127303.

    PubMed

    Yamasaki, Tomoteru; Mori, Wakana; Zhang, Yiding; Hatori, Akiko; Fujinaga, Masayuki; Wakizaka, Hidekatsu; Kurihara, Yusuke; Wang, Lu; Nengaki, Nobuki; Ohya, Tomoyuki; Liang, Steven H; Zhang, Ming-Rong

    2018-08-01

    Monoacylglycerol lipase (MAGL) is a main regulator of the endocannabinoid system within the central nervous system (CNS). Recently, [ 11 C]SAR127303 was developed as a promising radioligand for MAGL imaging. In this study, we aimed to quantify regional MAGL concentrations in the rat brain using positron emission tomography (PET) with [ 11 C]SAR127303. An irreversible two-tissue compartment model (2-TCMi, k 4  = 0) analysis was conducted to estimate quantitative parameters (k 3 , K i 2-TCMi , and λk 3 ). These parameters were successfully obtained with high identifiability (<10 %COV) for the following regions ranked in order from highest to lowest: cingulate cortex > striatum > hippocampus > thalamus > cerebellum > hypothalamus ≈ pons. In vitro autoradiographs using [ 11 C]SAR127303 showed a heterogeneous distribution of radioactivity, as seen in the PET images. The K i 2-TCMi and λk 3 values correlated relatively highly with in vitro binding (r > 0.4, P < 0.005). The K i 2-TCMi values showed high correlation and low underestimation (<10%) compared with the slope of a Patlak plot analysis with linear regression (K i Patlak ). In conclusion, we successfully estimated regional net uptake value of [ 11 C]SAR127303 reflecting MAGL concentrations in rat brain regions for the first time. Copyright © 2018 Elsevier Inc. All rights reserved.

  4. Hepatobiliary transport kinetics of the conjugated bile acid tracer 11C-CSar quantified in healthy humans and patients by positron emission tomography.

    PubMed

    Ørntoft, Nikolaj Worm; Munk, Ole Lajord; Frisch, Kim; Ott, Peter; Keiding, Susanne; Sørensen, Michael

    2017-08-01

    Hepatobiliary secretion of bile acids is an important liver function. Here, we quantified the hepatic transport kinetics of conjugated bile acids using the bile acid tracer [N-methyl- 11 C]cholylsarcosine ( 11 C-CSar) and positron emission tomography (PET). Nine healthy participants and eight patients with varying degrees of cholestasis were examined with 11 C-CSar PET and measurement of arterial and hepatic venous blood concentrations of 11 C-CSar. Results are presented as median (range). The hepatic intrinsic clearance was 1.50 (1.20-1.76) ml blood/min/ml liver tissue in healthy participants and 0.46 (0.13-0.91) in patients. In healthy participants, the rate constant for secretion of 11 C-CSar from hepatocytes to bile was 0.36 (0.30-0.62)min -1 , 20 times higher than the rate constant for backflux from hepatocytes to blood (0.02, 0.005-0.07min -1 ). In the patients, rate constant for transport from hepatocyte to bile was reduced to 0.12 (0.006-0.27)min -1 , 2.3times higher than the rate constant for backflux to blood (0.05, 0.04-0.09). The increased backflux did not fully normalize exposure of the hepatocyte to bile acids as mean hepatocyte residence time of 11 C-CSar was 2.5 (1.6-3.1)min in healthy participants and 6.4 (3.1-23.7)min in patients. The rate constant for transport of 11 C-CSar from intrahepatic to extrahepatic bile was 0.057 (0.023-0.11)min -1 in healthy participants and only slightly reduced in patients 0.039 (0.017-0.066). This first in vivo quantification of individual steps involved in the hepatobiliary secretion of a conjugated bile acid in humans provided new insight into cholestatic disease. Positron emission tomography (PET) using the radiolabelled bile acid ( 11 C-CSar) enabled quantification of the individual steps of the hepatic transport of bile acids from blood to bile in man. Cholestasis reduced uptake and secretion and increased backflux to blood. These findings improve our understanding of cholestatic liver diseases and may support

  5. CSAR 2014: A Benchmark Exercise Using Unpublished Data from Pharma.

    PubMed

    Carlson, Heather A; Smith, Richard D; Damm-Ganamet, Kelly L; Stuckey, Jeanne A; Ahmed, Aqeel; Convery, Maire A; Somers, Donald O; Kranz, Michael; Elkins, Patricia A; Cui, Guanglei; Peishoff, Catherine E; Lambert, Millard H; Dunbar, James B

    2016-06-27

    The 2014 CSAR Benchmark Exercise was the last community-wide exercise that was conducted by the group at the University of Michigan, Ann Arbor. For this event, GlaxoSmithKline (GSK) donated unpublished crystal structures and affinity data from in-house projects. Three targets were used: tRNA (m1G37) methyltransferase (TrmD), Spleen Tyrosine Kinase (SYK), and Factor Xa (FXa). A particularly strong feature of the GSK data is its large size, which lends greater statistical significance to comparisons between different methods. In Phase 1 of the CSAR 2014 Exercise, participants were given several protein-ligand complexes and asked to identify the one near-native pose from among 200 decoys provided by CSAR. Though decoys were requested by the community, we found that they complicated our analysis. We could not discern whether poor predictions were failures of the chosen method or an incompatibility between the participant's method and the setup protocol we used. This problem is inherent to decoys, and we strongly advise against their use. In Phase 2, participants had to dock and rank/score a set of small molecules given only the SMILES strings of the ligands and a protein structure with a different ligand bound. Overall, docking was a success for most participants, much better in Phase 2 than in Phase 1. However, scoring was a greater challenge. No particular approach to docking and scoring had an edge, and successful methods included empirical, knowledge-based, machine-learning, shape-fitting, and even those with solvation and entropy terms. Several groups were successful in ranking TrmD and/or SYK, but ranking FXa ligands was intractable for all participants. Methods that were able to dock well across all submitted systems include MDock,1 Glide-XP,2 PLANTS,3 Wilma,4 Gold,5 SMINA,6 Glide-XP2/PELE,7 FlexX,8 and MedusaDock.9 In fact, the submission based on Glide-XP2/PELE7 cross-docked all ligands to many crystal structures, and it was particularly impressive to see

  6. Blind Pose Prediction, Scoring, and Affinity Ranking of the CSAR 2014 Dataset.

    PubMed

    Martiny, Virginie Y; Martz, François; Selwa, Edithe; Iorga, Bogdan I

    2016-06-27

    The 2014 CSAR Benchmark Exercise was focused on three protein targets: coagulation factor Xa, spleen tyrosine kinase, and bacterial tRNA methyltransferase. Our protocol involved a preliminary analysis of the structural information available in the Protein Data Bank for the protein targets, which allowed the identification of the most appropriate docking software and scoring functions to be used for the rescoring of several docking conformations datasets, as well as for pose prediction and affinity ranking. The two key points of this study were (i) the prior evaluation of molecular modeling tools that are most adapted for each target and (ii) the increased search efficiency during the docking process to better explore the conformational space of big and flexible ligands.

  7. A 3D Reconstruction Strategy of Vehicle Outline Based on Single-Pass Single-Polarization CSAR Data.

    PubMed

    Leping Chen; Daoxiang An; Xiaotao Huang; Zhimin Zhou

    2017-11-01

    In the last few years, interest in circular synthetic aperture radar (CSAR) acquisitions has arisen as a consequence of the potential achievement of 3D reconstructions over 360° azimuth angle variation. In real-world scenarios, full 3D reconstructions of arbitrary targets need multi-pass data, which makes the processing complex, money-consuming, and time expending. In this paper, we propose a processing strategy for the 3D reconstruction of vehicle, which can avoid using multi-pass data by introducing a priori information of vehicle's shape. Besides, the proposed strategy just needs the single-pass single-polarization CSAR data to perform vehicle's 3D reconstruction, which makes the processing much more economic and efficient. First, an analysis of the distribution of attributed scattering centers from vehicle facet model is presented. And the analysis results show that a smooth and continuous basic outline of vehicle could be extracted from the peak curve of a noncoherent processing image. Second, the 3D location of vehicle roofline is inferred from layover with empirical insets of the basic outline. At last, the basic line and roofline of the vehicle are used to estimate the vehicle's 3D information and constitute the vehicle's 3D outline. The simulated and measured data processing results prove the correctness and effectiveness of our proposed strategy.

  8. CSAR (Combat, Search and Rescue) Aide: Design Requirements for a Combat Search and Rescue Decision Support System for Joint Rescue Coordination Centers

    DTIC Science & Technology

    1989-06-01

    with acetate depicting intelligence estimates of the order of battle (updated manually by intelligence specialists), in regulations, manuals , and a...mundane tasks (e.g. typing messages, filling out forms, and chasing down data) must be performed manually . The possibility of an important fact...formulate the requirements for CSAR AIDE. 2-1 D?cisiion Support Systems A Decision Support System (DSS) is a "systea ( manual or automated) that

  9. Using LiCSAR as a fast-response system for the detection and the monitoring of volcanic unrest

    NASA Astrophysics Data System (ADS)

    Albino, F.; Biggs, J.; Hatton, E. L.; Spaans, K.; Gaddes, M.; McDougall, A.

    2017-12-01

    Based on the Smithsonian Institution volcano database, a total of 13256 volcanoes exist on Earth with 1273 having evidence of eruptive or unrest activity during the Holocene. InSAR techniques have proven their ability to detect and to quantify volcanic ground deformation on a case-by-case basis. However, the use of InSAR for the daily monitoring of every active volcano requires the development of automatic processing that can provide information in a couple of hours after a new radar acquisition. The LiCSAR system (http://comet.nerc.ac.uk/COMET-LiCS-portal/) answers this requirement by processing the vast amounts of data generated daily by the EU's Sentinel-1 satellite constellation. It provides now high-resolution deformation data for the entire Alpine-Himalayan seismic belt. The aim of our study is to extend LiCSAR system to the purpose of volcano monitoring. For each active volcano, the last Sentinel products calculated (phase, coherence and amplitude) will be available online in the COMET Volcano Deformation Database. To analyse this large amount of InSAR products, we develop an algorithm to automatically detect ground deformation signals as well as changes in coherence and amplitude in the time series. This toolbox could be a powerful fast-response system for helping volcanological observatories to manage new or ongoing volcanic crisis. Important information regarding the spatial and the temporal evolution of each ground deformation signal will also be added to the COMET database. This will benefit to better understand the conditions in which volcanic unrest leads to an eruption. Such worldwide survey enables us to establish a large catalogue of InSAR products, which will also be suitable for further studies (mapping of new lava flows, modelling of magmatic sources, evaluation of stress interactions).

  10. Automated large-scale file preparation, docking, and scoring: evaluation of ITScore and STScore using the 2012 Community Structure-Activity Resource benchmark.

    PubMed

    Grinter, Sam Z; Yan, Chengfei; Huang, Sheng-You; Jiang, Lin; Zou, Xiaoqin

    2013-08-26

    In this study, we use the recently released 2012 Community Structure-Activity Resource (CSAR) data set to evaluate two knowledge-based scoring functions, ITScore and STScore, and a simple force-field-based potential (VDWScore). The CSAR data set contains 757 compounds, most with known affinities, and 57 crystal structures. With the help of the script files for docking preparation, we use the full CSAR data set to evaluate the performances of the scoring functions on binding affinity prediction and active/inactive compound discrimination. The CSAR subset that includes crystal structures is used as well, to evaluate the performances of the scoring functions on binding mode and affinity predictions. Within this structure subset, we investigate the importance of accurate ligand and protein conformational sampling and find that the binding affinity predictions are less sensitive to non-native ligand and protein conformations than the binding mode predictions. We also find the full CSAR data set to be more challenging in making binding mode predictions than the subset with structures. The script files used for preparing the CSAR data set for docking, including scripts for canonicalization of the ligand atoms, are offered freely to the academic community.

  11. A Second Quorum-Sensing System Regulates Cell Surface Properties but Not Phenazine Antibiotic Production in Pseudomonas aureofaciens

    PubMed Central

    Zhang, Zhongge; Pierson, Leland S.

    2001-01-01

    The root-associated biological control bacterium Pseudomonas aureofaciens 30-84 produces a range of exoproducts, including protease and phenazines. Phenazine antibiotic biosynthesis by phzXYFABCD is regulated in part by the PhzR-PhzI quorum-sensing system. Mutants defective in phzR or phzI produce very low levels of phenazines but wild-type levels of exoprotease. In the present study, a second genomic region of strain 30-84 was identified that, when present in trans, increased β-galactosidase activity in a genomic phzB::lacZ reporter and partially restored phenazine production to a phzR mutant. Sequence analysis identified two adjacent genes, csaR and csaI, that encode members of the LuxR-LuxI family of regulatory proteins. No putative promoter region is present upstream of the csaI start codon and no lux box-like element was found in either the csaR promoter or the 30-bp intergenic region between csaR and csaI. Both the PhzR-PhzI and CsaR-CsaI systems are regulated by the GacS-GacA two-component regulatory system. In contrast to the multicopy effects of csaR and csaI in trans, a genomic csaR mutant (30-84R2) and a csaI mutant (30-84I2) did not exhibit altered phenazine production in vitro or in situ, indicating that the CsaR-CsaI system is not involved in phenazine regulation in strain 30-84. Both mutants also produced wild-type levels of protease. However, disruption of both csaI and phzI or both csaR and phzR eliminated both phenazine and protease production completely. Thus, the two quorum-sensing systems do not interact for phenazine regulation but do interact for protease regulation. Additionally, the CsaI N-acylhomoserine lactone (AHL) signal was not recognized by the phenazine AHL reporter 30-84I/Z but was recognized by the AHL reporters Chromobacterium violaceum CV026 and Agrobacterium tumefaciens A136(pCF240). Inactivation of csaR resulted in a smooth mucoid colony phenotype and formation of cell aggregates in broth, suggesting that CsaR is involved in

  12. Comparing laser induced plasmas formed in diode and excimer pumped alkali lasers.

    PubMed

    Markosyan, Aram H

    2018-01-08

    Lasing on the D 1 transition (6 2 P 1/2 → 6 2 S 1/2 ) of cesium can be reached in both diode and excimer pumped alkali lasers. The first uses D 2 transition (6 2 S 1/2 → 6 2 P 3/2 ) for pumping, whereas the second is pumped by photoexcitation of ground state Cs-Ar collisional pairs and subsequent dissociation of diatomic, electronically-excited CsAr molecules (excimers). Despite lasing on the same D 1 transition, differences in pumping schemes enables chemical pathways and characteristic timescales unique for each system. We investigate unavoidable plasma formation during operation of both systems side by side in Ar/C 2 H 6 /Cs.

  13. Comparing laser induced plasmas formed in diode and excimer pumped alkali lasers

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Markosyan, Aram H.

    Here, lasing on the D 1 transition (6 2P 1/2 → 6 2S 1/2) of cesium can be reached in both diode and excimer pumped alkali lasers. The first uses D 2 transition (6 2S 1/2 → 6 2P 3/2) for pumping, whereas the second is pumped by photoexcitation of ground state Cs-Ar collisional pairs and subsequent dissociation of diatomic, electronically-excited CsAr molecules (excimers). Despite lasing on the same D 1 transition, differences in pumping schemes enables chemical pathways and characteristic timescales unique for each system. We investigate unavoidable plasma formation during operation of both systems side by side inmore » Ar/C 2H 6/Cs.« less

  14. Comparing laser induced plasmas formed in diode and excimer pumped alkali lasers

    DOE PAGES

    Markosyan, Aram H.

    2018-01-05

    Here, lasing on the D 1 transition (6 2P 1/2 → 6 2S 1/2) of cesium can be reached in both diode and excimer pumped alkali lasers. The first uses D 2 transition (6 2S 1/2 → 6 2P 3/2) for pumping, whereas the second is pumped by photoexcitation of ground state Cs-Ar collisional pairs and subsequent dissociation of diatomic, electronically-excited CsAr molecules (excimers). Despite lasing on the same D 1 transition, differences in pumping schemes enables chemical pathways and characteristic timescales unique for each system. We investigate unavoidable plasma formation during operation of both systems side by side inmore » Ar/C 2H 6/Cs.« less

  15. Jobs CSAR Act of 2009

    THOMAS, 111th Congress

    Sen. Snowe, Olympia J. [R-ME

    2009-04-02

    Senate - 04/02/2009 Read twice and referred to the Committee on Commerce, Science, and Transportation. (All Actions) Tracker: This bill has the status IntroducedHere are the steps for Status of Legislation:

  16. Initial Assessment, Nation Assistance Opportunities, Sula Valley, Honduras Central America

    DTIC Science & Technology

    1991-04-01

    Trapero Comunicaciones , Obras Pdblicas y Transporte (Communications, Public Works and Transportation) Dr. C~sar Castellanos - Ministry of Salud Pablica y...Engineer, Sub-SecreLario de Comunicaciones y Transporte (Communications and Transportation) A-1 Mr. Mauro Membreho - Minister of Communications, Public

  17. DOE Office of Scientific and Technical Information (OSTI.GOV)

    W. L. Poe, Jr.; P.F. Wise

    The U.S. Department of Energy (DOE) is preparing a proposal to construct, operate 2nd monitor, and eventually close a repository at Yucca Mountain in Nye County, Nevada, for the geologic disposal of spent nuclear fuel (SNF) and high-level radioactive waste (HLW). As part of this effort, DOE has prepared a viability assessment and an assessment of potential consequences that may exist if the repository is not constructed. The assessment of potential consequences if the repository is not constructed assumes that all SNF and HLW would be left at the generator sites. These include 72 commercial generator sites (three commercial facilitymore » pairs--Salem and Hope Creek, Fitzpatrick and Nine Mile Point, and Dresden and Morris--would share common storage due to their close proximity to each other) and five DOE sites across the country. DOE analyzed the environmental consequences of the effects of the continued storage of these materials at these sites in a report titled Continued Storage Analysis Report (CSAR; Reference 1 ) . The CSAR analysis includes a discussion of the degradation of these materials when exposed to the environment. This document describes the environmental parameters that influence the degradation analyzed in the CSAR. These include temperature, relative humidity, precipitation chemistry (pH and chemical composition), annual precipitation rates, annual number of rain-days, and annual freeze/thaw cycles. The document also tabulates weather conditions for each storage site, evaluates the degradation of concrete storage modules and vaults in different regions of the country, and provides a thermal analysis of commercial SNF in storage.« less

  18. Cyclosporin A-induced gingival overgrowth in the rat: a histological, ultrastructural and histomorphometric evaluation.

    PubMed

    Ayanoglou, C M; Lesty, C

    1999-01-01

    This investigation was undertaken to further study cyclosporin A (CsA)-induced gingival overgrowth. Thirty mg/kg/d of vehicle or CsA solutions were given orally to 6-wk-old male Sprague-Dawley rats. After 4, 9, 14 and 19 wk 2 control and 2 experimental rats were anaesthetized, tissues fixed by intracardiac perfusion of fixative solution and jaws processed for Epon inclusion. Histological and ultrastructural studies conducted in a gingival portion (free gingiva) revealed the presence of hyalinization areas and of multinucleated cells (MCs) containing collagen fibrils (connective tissue), of amorphous areas and disorders of keratinization (epithelia). Histomorphometric evaluation indicated that in the CsA rats the mean cross-sectional area of the free gingiva was 2.52-fold increased compared to the controls. The connective tissue comprised 41.43% of this area (instead of 31.49% in controls). Additional histomorphometric evaluation was performed in 3 groups of free gingival portions: control (C group), CsA-non-respondent (CsA-nR) and CsA-respondent (CsA-R). The cross-sectional gingival areas studied were slightly lower than the mean area of all the control sites previously defined (groups C and CsA-nR) or showed the higher degrees of enlargement (CsA-R). In the CsA-R group the mean cross-sectioned area of the vessel profiles was increased and the number of fibroblast profiles decreased. In the CsA-nR group the number of vessel profiles and that of MCs profiles were increased. In the epithelia of the CsA-R group were increased (a) keratinized epithelia: thickness; thickness of the inner and of the outer compartments; surface area of spinous cell profiles; (b) oral gingival epithelium: number of cell layers (inner compartment); (c) oral sulcular epithelium: surface area of granular cell profiles; (d) junctional epithelium: thickness; number of cell layers. These results indicate that (a) the CsA induced modifications are not limited to enlarged gingiva (b) the

  19. Towards a physical interpretation of substituent effect: Quantum chemical interpretation of Hammett substituent constants

    NASA Astrophysics Data System (ADS)

    Varaksin, Konstantin S.; Szatylowicz, Halina; Krygowski, Tadeusz M.

    2017-06-01

    Quantitative description of substituent effects is of a great importance especially in organic chemistry and QSAR-type treatments. The proposed approaches: substituent effect stabilization energy (SESE) and charge of the substituent active region (cSAR) provide substituent effect characteristics, physically independent of the Hammett's substituent constants, σ. To document abilities of these descriptors the B3LYP/6-311++G(d,p) method is employed to examine changes in properties of a reaction center Y (Y = COOH or COO- groups) and a transmitting moiety (benzene ring) due to substituent effects in a series of meta- and para-X-substituted benzoic acid and benzoate anion derivatives (X = NMe2, NH2, OH, OMe, CH3, H, F, Cl, CF3, CN, CHO, COMe, CONH2, COOH, NO2, NO). The transmitting moiety is described by aromaticity indices HOMA and NICS(1). Furthermore, an advantage of the cSAR characteristic is the ability to use it to describe both electron donating/accepting properties of a substituent as well as a reaction center. It allows demonstration of the reverse substituent effects of COOH and COO- groups on substituent X.

  20. A Simple Model for Fine Structure Transitions in Alkali-Metal Noble-Gas Collisions

    DTIC Science & Technology

    2015-03-01

    63 33 Effect of Scaling the VRG(R) Radial Coupling Fit Parameter, V0, for KHe, KNe, and KAr...64 ix Figure Page 34 Effect of Scaling the VRG(R) Radial Coupling Fit Parameter, V0, for RbHe, RbNe, and...RbAr . . . . . . . . . . . . . . . . . . . . . . . . . 64 35 Effect of Scaling the VRG(R) Radial Coupling Fit Parameter, V0, for CsHe, CsNe, and CsAr

  1. Absence of magnetic order in low-dimensional (RKKY) systems

    NASA Astrophysics Data System (ADS)

    Pedrocchi, Fabio; Leggett, Anthony; Loss, Daniel

    2012-02-01

    We extend the Mermin-Wagner theorem to a system of lattice spins which are spin-coupled to itinerant and interacting charge carriers. We use the Bogoliubov inequality to rigorously prove that neither (anti-) ferromagnetic nor helical long-range order is possible in one and two dimensions at any finite temperature. Our proof applies to a wide class of models including any form of electron-electron and single-electron interactions that are independent of spin. In the presence of Rashba or Dresselhaus spin-orbit interactions (SOI) magnetic order is not excluded and intimately connected to equilibrium spin currents. However, in the special case when Rashba and Dresselhaus SOIs are tuned to be equal, magnetic order is excluded again. This opens up a new possibility to control magnetism electrically. [4pt] References: D. Loss, F. L. Pedrocchi, and A. J. Leggett, Phys. Rev. Lett. 107, 107201 (2011).

  2. Support vector regression scoring of receptor-ligand complexes for rank-ordering and virtual screening of chemical libraries.

    PubMed

    Li, Liwei; Wang, Bo; Meroueh, Samy O

    2011-09-26

    The community structure-activity resource (CSAR) data sets are used to develop and test a support vector machine-based scoring function in regression mode (SVR). Two scoring functions (SVR-KB and SVR-EP) are derived with the objective of reproducing the trend of the experimental binding affinities provided within the two CSAR data sets. The features used to train SVR-KB are knowledge-based pairwise potentials, while SVR-EP is based on physicochemical properties. SVR-KB and SVR-EP were compared to seven other widely used scoring functions, including Glide, X-score, GoldScore, ChemScore, Vina, Dock, and PMF. Results showed that SVR-KB trained with features obtained from three-dimensional complexes of the PDBbind data set outperformed all other scoring functions, including best performing X-score, by nearly 0.1 using three correlation coefficients, namely Pearson, Spearman, and Kendall. It was interesting that higher performance in rank ordering did not translate into greater enrichment in virtual screening assessed using the 40 targets of the Directory of Useful Decoys (DUD). To remedy this situation, a variant of SVR-KB (SVR-KBD) was developed by following a target-specific tailoring strategy that we had previously employed to derive SVM-SP. SVR-KBD showed a much higher enrichment, outperforming all other scoring functions tested, and was comparable in performance to our previously derived scoring function SVM-SP.

  3. Strategic and Operational Relevance of Heavy Lift in the United States Marine Corps: CH-53E Program

    DTIC Science & Technology

    2002-05-01

    strategic and operational relevance of the capabilities of the CH-53E: - Operation EASTERN EXIT - The recovery of Basher 52 (Captain Scott O’Grady Rescue...that were required, but also carried a significant payload. Recovery of Basher 52 Captain Scott O’Grady’s F-16 was shot down while flying over Bosnia...theater Combat Search And Rescue (CSAR) assets. When the call to recover Basher 52 came in, the CH-53E was the aircraft of choice. The CH-53E could not

  4. Physical states and finite-size effects in Kitaev's honeycomb model: Bond disorder, spin excitations, and NMR line shape

    NASA Astrophysics Data System (ADS)

    Zschocke, Fabian; Vojta, Matthias

    2015-07-01

    Kitaev's compass model on the honeycomb lattice realizes a spin liquid whose emergent excitations are dispersive Majorana fermions and static Z2 gauge fluxes. We discuss the proper selection of physical states for finite-size simulations in the Majorana representation, based on a recent paper by F. L. Pedrocchi, S. Chesi, and D. Loss [Phys. Rev. B 84, 165414 (2011), 10.1103/PhysRevB.84.165414]. Certain physical observables acquire large finite-size effects, in particular if the ground state is not fermion-free, which we prove to generally apply to the system in the gapless phase and with periodic boundary conditions. To illustrate our findings, we compute the static and dynamic spin susceptibilities for finite-size systems. Specifically, we consider random-bond disorder (which preserves the solubility of the model), calculate the distribution of local flux gaps, and extract the NMR line shape. We also predict a transition to a random-flux state with increasing disorder.

  5. Design definition study of a lift/cruise fan technology V/STOL aircraft. Volume 1: Navy operational aircraft

    NASA Technical Reports Server (NTRS)

    1975-01-01

    Aircraft were designed and sized to meet Navy mission requirements. Five missions were established for evaluation: anti-submarine warfare (ASW), surface attack (SA), combat search and rescue (CSAR), surveillance (SURV), and vertical on-board delivery (VOD). All missions were performed with a short takeoff and a vertical landing. The aircraft were defined using existing J97-GE gas generators or reasonable growth derivatives in conjunction with turbotip fans reflecting LF460 type technology. The multipurpose aircraft configuration established for U.S. Navy missions utilizes the turbotip driven lift/cruise fan concept for V/STOL aircraft.

  6. Application of a Boson Expansion Formalism Based on the Random Phase Approximation to Samarium Isotopes

    NASA Astrophysics Data System (ADS)

    Jamaluddin, Muzhar Bin

    The Boson Expansion Theory of Kishimoto and Tamura has proved to be very successful in describing quadrupole collective motions in even-even nuclei. This theory, however, involves a complicated transformation from the Tamm-Dancoff phonons to the phonons of the Random Phase Approximation. In this thesis a Boson Expansion formalism, derived directly from the Random Phase Approximation and set forth by Pedracchi and Tamura, is used to derive the boson forms of the nuclear Hamiltonian and the electromagnetic transition operator. Detailed discussions of the formalism of Pedrocchi and Tamura and its extension needed to perform realistic calculations are presented. The technique used to deriving the boson forms and the formulae used in the calculations are also given a thorough treatment to demonstrate the simplicity of this approach. Finally, the theory is tested by applying it to calculate the energy levels and some electromagnetic properties of the Samarium isotopes. The results show that the present theory is capable of describing the range of behavior from a vibrational to a rotational character of the Samarium isotopes as good as the previous theory.

  7. The C.SAR Cougar, an Example of Optimization of an Existing Helicopter. (Le Cougar C.SAR, un exemple d’optimisation d’un helicoptere existant)

    DTIC Science & Technology

    2000-04-01

    Jefferson Davis Highway, Suite 1204, Arlington, VA 22202-4302, and to the Office of Management and Budget, Paperwork Reduction Project (0704-0188...PERFORMING ORGANIZATION NAME(S) AND ADDRESS(ES) EUROCOPTER Aeroport International de Marseille-Provence 13725 Marseille Cedex France 9. SPONSORING/MONITORING...P.JAILLET & T. GIACINO EUROCOPTER AMroport International de Marseille-Provence 13725 Marseille Cedex, France 0. Sommaire: Les principales exigences pour ce

  8. Application of a Boson Expansion formalism based on the Random Phase Approximation to samarium isotopes

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Jamaluddin, M.B.

    1986-01-01

    The Boson Expansion Theory of Kishimoto and Tamura has proved to be very successful in describing quadrupole collective motions in even-even nuclei. This theory, however, involves a complicated transformation from the Tamm-Dancoff phonons to the phonons of the random Phase Approximation. In this thesis a Boson Expansion formalism, derived directly from the Random Phase Approximation and set forth by Pedracchi and Tamura, is used to derive the boson forms of the nuclear Hamiltonian and the electromagnetic transition operator. Detailed discussions of the formalism of Pedrocchi and Tamura and its extension needed to perform realistic calculations are presented. The technique usedmore » to deriving the boson forms and the formulae used in the calculations are also given a thorough treatment to demonstrate the simplicity of this approach. Finally, the theory is tested by applying it to calculate the energy levels and some electromagnetic properties of the Samarium isotopes. The results show that the present theory is capable of describing the range of behavior from a vibrational to a rotational character of the Samarium isotopes as well as the previous theory.« less

  9. CSAR-eXit: The Future of Air Force Combat Search and Rescue

    DTIC Science & Technology

    2010-04-01

    lines is high. At the same time the DoD must remain a trusted steward of the nation’s talent and treasure. It is our Soldiers, Sailors, Airmen and...never accept defeat, never quit, and never leave a fallen comrade.” General Peter J . Schoomaker Chief of Staff, United States Army In the post 9...1 Dec 1946 – 8 Jul 1952 The last line of the Air Force Vision states, “We will excel as stewards of all Air Force resources in service to the

  10. Self-correcting quantum memory with a boundary

    NASA Astrophysics Data System (ADS)

    Hutter, Adrian; Wootton, James R.; Röthlisberger, Beat; Loss, Daniel

    2012-11-01

    We study the two-dimensional toric-code Hamiltonian with effective long-range interactions between its anyonic excitations induced by coupling the toric code to external fields. It has been shown that such interactions allow an arbitrary increase in the lifetime of the stored quantum information by making L, the linear size of the memory, larger [Chesi , Phys. Rev. APLRAAN1050-294710.1103/PhysRevA.82.022305 82, 022305 (2010)]. We show that for these systems the choice of boundary conditions (open boundaries as opposed to periodic boundary conditions) is not a mere technicality; the influence of anyons produced at the boundaries becomes in fact dominant for large enough L. This influence can be either beneficial or detrimental. In particular, we study an effective Hamiltonian proposed by Pedrocchi [Phys. Rev. BPRBMDO1098-012110.1103/PhysRevB.83.115415 83, 115415 (2011)] that describes repulsion between anyons and anyon holes. For this system, we find a lifetime of the stored quantum information that grows exponentially in L2 for both periodic and open boundary conditions, although the exponent in the latter case is found to be less favorable. However, L is upper bounded through the breakdown of the perturbative treatment of the underlying Hamiltonian.

  11. The Boson Expansion Theory as the Nuclear Structure Theory for the Heavy Nuclei.

    NASA Astrophysics Data System (ADS)

    Kim, Hyoung-Bae

    1987-09-01

    Sometime ago, Kishimoto and Tamura developed a formalism of boson expansion theory (BET), and then Weeks and Tamura showed that it fitted many experimental data of collective nuclei. This formalism has recently been simplified significantly by Pedrocchi, Jamaluddin and Tamura. The new and old theories are very closely related but are not exactly the same. It has thus been desired to see whether the new theory can also fit data, and to show that it indeed works well constitutes a major part of this thesis. It is in fact seen that a number of data of Sm, Os and Pt isotopes are explained nicely. Since the new form of the theory is rather simple, it permits us to take into account easily the effects of noncollective states to the behavior of collective states. This thesis shows that a remarkably improved fit to data of magnetic moments of Sm isotopes is achieved in this way. The thesis discusses one additional subject. It is a result of an effort made to improve the BET by removing as much as possible the error due to the use of the BCS theory. This was done by applying a method developed by Li to the Dyson form of BET. A way to develop this work further is suggested.

  12. Heterogeneous propellant internal ballistics: criticism and regeneration

    NASA Astrophysics Data System (ADS)

    Glick, R. L.

    2011-10-01

    Although heterogeneous propellant and its innately nondeterministic, chemically discrete morphology dominates applications, ballisticcharacterization deterministic time-mean burning rate and acoustic admittance measures' absence of explicit, nondeterministic information requires homogeneous propellant with a smooth, uniformly regressing burning surface: inadequate boundary conditions for heterogeneous propellant grained applications. The past age overcame this dichotomy with one-dimensional (1D) models and empirical knowledge from numerous, adequately supported motor developments and supplementary experiments. However, current cost and risk constraints inhibit this approach. Moreover, its fundamental science approach is more sensitive to incomplete boundary condition information (garbage-in still equals garbage-out) and more is expected. This work critiques this situation and sketches a path forward based on enhanced ballistic and motor characterizations in the workplace and approximate model and apparatus developments mentored by CSAR DNS capabilities (or equivalent).

  13. The boson expansion theory as the nuclear structure theory for the heavy nuclei

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Kim, H.B.

    1987-01-01

    Sometime sago, Kishimoto and Tamura developed a formalism of boson expansion theory (BET), and then Weeks and Tamura showed that it fitted many experimental data of collective nuclei. This formalism has recently been simplified significantly be Pedrocchi, Jamaluddin and Tamura. The new and old theories are very closely related but are not exactly the same. It has thus been desired to see whether the new theory can also fit data, and to show that it indeed works well constitutes a major part of this thesis. It is in fact seen that a number of data of Sm, Os and Ptmore » isotopes are explained nicely. Since the new form of the theory is rather simple, it permits us to take into account easily the effects of noncollective states to the behavior of collective states. This thesis shows that are remarkably improved fit to data of magnetic moments of SM isotopes is achieved in this way. The thesis discusses one additional subject. It is a result of an effort made to improve the BET by removing as much as possible the error due to the use of the BCS theory. This was done by applying a method developed by Li to the Dyson form of BET. A way to develop this work further is suggested.« less

  14. Houston-Galveston Navigation Channels Texas Project. Report 1. Galveston Bay Field Investigation

    DTIC Science & Technology

    1994-07-01

    Botim (Continued) 1810 14.8 2.8 314 1909 14.6 3.2 312 2018 14.0 3.3 308 2109 14.0 3.1 310 2210 14.0 2.3 319 2311 13.8 0.6 324 0011 14.3 0.8 139 0110...0.6 360 1216 3.0 0.4 345 1321 3.0 0.3 318 1412 3.0 0.4 345 1520 3.0 0.7 12 1619 3.0 1.0 10 1723 3.0 1.4 360 1615 3.0 1.5 354 1924 3.0 1.5 350 2018 3.0...nhV jispunded S~d~mM csar n_____ _____ 1811 10.2 24.25 30 1915 10.2 21.76 30 2018 10.5 20.07 26 2115 10.2 19.23 40 2214 10.0 18.22 10 2313 10.5 19.74

  15. REGIONAL BINNING FOR CONTINUED STORAGE OF SPENT NUCLEAR FUEL AND HIGH-LEVEL WASTES

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    W. Lee Poe, Jr

    1998-10-01

    In the Continued Storage Analysis Report (CSAR) (Reference 1), DOE decided to analyze the environmental consequences of continuing to store the commercial spent nuclear fuel (SNF) at 72 commercial nuclear power sites and DOE-owned spent nuclear fuel and high-level waste at five Department of Energy sites by region rather than by individual site. This analysis assumes that three commercial facilities pairs--Salem and Hope Creek, Fitzpatrick and Nine-Mile Point, and Dresden and Moms--share common storage due to their proximity to each other. The five regions selected for this analysis are shown on Figure 1. Regions 1, 2, and 3 are themore » same as those used by the Nuclear Regulatory Commission in their regulatory oversight of commercial power reactors. NRC Region 4 was subdivided into two regions to more appropriately define the two different climates that exist in NRC Region 4. A single hypothetical site in each region was assumed to store all the SNF and HLW in that region. Such a site does not exist and has no geographic location but is a mathematical construct for analytical purposes. To ensure that the calculated results for the regional analyses reflect appropriate inventory, facility and material degradation, and radionuclide transport, the waste inventories, engineered barriers, and environmental conditions for the hypothetical sites were developed from data for each of the existing sites within the given region. Weighting criteria to account for the amount and types of SNF and HLW at each site were used in the development of the environmental data for the regional site, such that the results of the analyses for the hypothetical site were representative of the sum of the results of each actual site if they had been modeled independently. This report defines the actual site data used in development of this hypothetical site, shows how the individual site data was weighted to develop the regional site, and provides the weighted data used in the CSAR

  16. AN F-16 COMMUNITY PUSHED TO THE LIMIT: CAN THEY HANDLE ADDING COMBAT SEARCH AND RESCUE (CSAR)

    DTIC Science & Technology

    2015-10-01

    recovery. Traditionally, the HH-60G Pave Hawk is the RV expected to be used in a majority of scenarios. An article from www.military.com stated that...the HH-60G Pave Hawk is the U.S. Air Force’s primary combat search and rescue helicopter used by Air Force special tactics teams and pararescuemen...16 This aircraft is a version of the Army Black Hawk helicopter that has been modified to meet the needs of the Air Force.17 The locations of

  17. A Combat Search and Rescue (CSAR) Role for the CV-22: It’s Coming, Get Ready

    DTIC Science & Technology

    2008-04-01

    STUDY SHOULD INCLUDE THE FOREGOING STATEMENT. QUOTATION FROM, ABSTRACTION FROM, OR REPRODUCTION OF ALL OR ANY PART OF THIS DOCUMENT IS PERMITTED...naval-technology.com. IInaval-technology.com. 1I CH-53E Super Stallion - Heavy-Lift Helicopter. 2007. http://www.naval-technology.com/projects/ch-53e...accessed March 19,2008). Olson, Eric. AFSOC Mission Guidanc.e Letter. U.S. Special Operations Command, October 2007. Pike, John. IICH-53E Super Stallion

  18. Three-dimensional landing zone ladar

    NASA Astrophysics Data System (ADS)

    Savage, James; Goodrich, Shawn; Burns, H. N.

    2016-05-01

    Three-Dimensional Landing Zone (3D-LZ) refers to a series of Air Force Research Laboratory (AFRL) programs to develop high-resolution, imaging ladar to address helicopter approach and landing in degraded visual environments with emphasis on brownout; cable warning and obstacle avoidance; and controlled flight into terrain. Initial efforts adapted ladar systems built for munition seekers, and success led to a the 3D-LZ Joint Capability Technology Demonstration (JCTD) , a 27-month program to develop and demonstrate a ladar subsystem that could be housed with the AN/AAQ-29 FLIR turret flown on US Air Force Combat Search and Rescue (CSAR) HH-60G Pave Hawk helicopters. Following the JCTD flight demonstration, further development focused on reducing size, weight, and power while continuing to refine the real-time geo-referencing, dust rejection, obstacle and cable avoidance, and Helicopter Terrain Awareness and Warning (HTAWS) capability demonstrated under the JCTD. This paper summarizes significant ladar technology development milestones to date, individual LADAR technologies within 3D-LZ, and results of the flight testing.

  19. Elemental depth profiles and plasma etching rates of positive-tone electron beam resists after sequential infiltration synthesis of alumina

    NASA Astrophysics Data System (ADS)

    Ozaki, Yuki; Ito, Shunya; Hiroshiba, Nobuya; Nakamura, Takahiro; Nakagawa, Masaru

    2018-06-01

    By scanning transmission electron microscopy and energy dispersive X-ray spectroscopy (STEM–EDS), we investigated the elemental depth profiles of organic electron beam resist films after the sequential infiltration synthesis (SIS) of inorganic alumina. Although a 40-nm-thick poly(methyl methacrylate) (PMMA) film was entirely hybridized with alumina, an uneven distribution was observed near the interface between the substrate and the resist as well as near the resist surface. The uneven distribution was observed around the center of a 100-nm-thick PMMA film. The thicknesses of the PMMA and CSAR62 resist films decreased almost linearly as functions of plasma etching period. The comparison of etching rate among oxygen reactive ion etching, C3F8 reactive ion beam etching (RIBE), and Ar ion beam milling suggested that the SIS treatment enhanced the etching resistance of the electron beam resists to chemical reactions rather than to ion collisions. We proposed oxygen- and Ar-assisted C3F8 RIBE for the fabrication of silica imprint molds by electron beam lithography.

  20. Multi-quantum excitation in optically pumped alkali atom: rare gas mixtures

    NASA Astrophysics Data System (ADS)

    Galbally-Kinney, K. L.; Rawlins, W. T.; Davis, S. J.

    2014-03-01

    Diode-pumped alkali laser (DPAL) technology offers a means of achieving high-energy gas laser output through optical pumping of the D-lines of Cs, Rb, and K. The exciplex effect, based on weak attractive forces between alkali atoms and polarizable rare gas atoms (Ar, Kr, Xe), provides an alternative approach via broadband excitation of exciplex precursors (XPAL). In XPAL configurations, we have observed multi-quantum excitation within the alkali manifolds which result in infrared emission lines between 1 and 4 μm. The observed excited states include the 42FJ states of both Cs and Rb, which are well above the two-photon energy of the excitation laser in each case. We have observed fluorescence from multi-quantum states for excitation wavelengths throughout the exciplex absorption bands of Cs-Ar, Cs-Kr, and Cs-Xe. The intensity scaling is roughly first-order or less in both pump power and alkali concentration, suggesting a collisional energy pooling excitation mechanism. Collisional up-pumping appears to present a parasitic loss term for optically pumped atomic systems at high intensities, however there may also be excitation of other lasing transitions at infrared wavelengths.

  1. Comparative study of diode-pumped alkali vapor laser and exciplex-pumped alkali laser systems and selection principal of parameters

    NASA Astrophysics Data System (ADS)

    Huang, Wei; Tan, Rongqing; Li, Zhiyong; Han, Gaoce; Li, Hui

    2017-03-01

    A theoretical model based on common pump structure is proposed to analyze the output characteristics of a diode-pumped alkali vapor laser (DPAL) and XPAL (exciplex-pumped alkali laser). Cs-DPAL and Cs-Ar XPAL systems are used as examples. The model predicts that an optical-to-optical efficiency approaching 80% can be achieved for continuous-wave four- and five-level XPAL systems with broadband pumping, which is several times the pumped linewidth for DPAL. Operation parameters including pumped intensity, temperature, cell's length, mixed gas concentration, pumped linewidth, and output coupler are analyzed for DPAL and XPAL systems based on the kinetic model. In addition, the predictions of selection principal of temperature and cell's length are also presented. The concept of the equivalent "alkali areal density" is proposed. The result shows that the output characteristics with the same alkali areal density but different temperatures turn out to be equal for either the DPAL or the XPAL system. It is the areal density that reflects the potential of DPAL or XPAL systems directly. A more detailed analysis of similar influences of cavity parameters with the same areal density is also presented.

  2. Multiphysics Application Coupling Toolkit

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Campbell, Michael T.

    2013-12-02

    This particular consortium implementation of the software integration infrastructure will, in large part, refactor portions of the Rocstar multiphysics infrastructure. Development of this infrastructure originated at the University of Illinois DOE ASCI Center for Simulation of Advanced Rockets (CSAR) to support the center's massively parallel multiphysics simulation application, Rocstar, and has continued at IllinoisRocstar, a small company formed near the end of the University-based program. IllinoisRocstar is now licensing these new developments as free, open source, in hopes to help improve their own and others' access to infrastructure which can be readily utilized in developing coupled or composite software systems;more » with particular attention to more rapid production and utilization of multiphysics applications in the HPC environment. There are two major pieces to the consortium implementation, the Application Component Toolkit (ACT), and the Multiphysics Application Coupling Toolkit (MPACT). The current development focus is the ACT, which is (will be) the substrate for MPACT. The ACT itself is built up from the components described in the technical approach. In particular, the ACT has the following major components: 1.The Component Object Manager (COM): The COM package provides encapsulation of user applications, and their data. COM also provides the inter-component function call mechanism. 2.The System Integration Manager (SIM): The SIM package provides constructs and mechanisms for orchestrating composite systems of multiply integrated pieces.« less

  3. M.Y.S.P.A.C.E. : Multinational Youth Studying Practical Applications of Climatic Events

    NASA Astrophysics Data System (ADS)

    Mckay, M.; Arvedson, J. P.; Arvedson, P.

    2014-12-01

    M.Y. S.P.A.C.E. (Multinational Youth Studying Practical Applications of Climatic Events) is an international collaboration of high school students engaged in self-selected research projects on the local impact of global environmental issues. Students work with their own, trained, Teacher Leaders at their school sites using both locally generated and satellite-based remote-sensing data with support from the National Oceanic and Atmospheric Administration (NOAA) and the National Aeronautics and Space Administration (NASA). Teams from each school meet at the annual Satellites & Education Conference to discover global trends in their collective data and present their findings. Students learn and practice techniques of scientific investigation; methods of data processing, analysis and interpretation; leadership; and effective communication. They work with NOAA and NASA scientists and engineers, experience university campus life, and can apply for special internships at selected university research centers such as the Center for Energy and Sustainability (CE&S), the Center for Spatial Analysis and Remote Sensing (CSARS), and graduate research opportunities in Geosciences and Environment. The M.Y. S.P.A.C.E. Program is an initiative of the Satellites & Education Conference, which is produced by the non-profit Satellite Educators Association. It is administered from the campus of California State University, Los Angeles. NOAA, NASA, and the NOAA-CREST West grant support the program. It is aligned with NOAA goals of building excitement about careers in science, math, engineering and technology.

  4. Theoretical model and simulations for a cw exciplex pumped alkali laser.

    PubMed

    Huang, Wei; Tan, Rongqing; Li, Zhiyong; Lu, Xiaochuan

    2015-12-14

    The Exciplex Pumped Alkali Laser (XPAL) system, which is similar to DPAL (Diode Pumped Alkali vapor Laser), has been demonstrated in mixtures of Cs vapor, Ar, with and without ethane. Unlike DPAL, it uses the broadband absorption blue satellite of the alkali D2 line, created by naturally occuring collision pairs. For example, Cs-Ar collision pairs have an absorption width which is as wide as the one of commercial semiconductor diode lasers. A continuous wave XPAL four-level theoretical model is presented in this paper. More factors are considered, such as the spectral dependence of pumped laser absorption for broadband pumping and the longitudinal population variation. Some intra-cavity details, such as longitudinal distributions of pumped laser and alkali laser, can also be solved well. The predictions of optical-to-optical efficiency as a function of temperature and pumped laser intensity are presented. The model predicts that there is an optimum value of temperature or pumped laser intensity. The analysis of the influence of cell length on optical-to-optical efficiency shows that a better performance can be achieved when using longer cell. The prediction of influence of Ar concentration and reflectivity of output coupler shows that higher optical-to-optical efficiency could be achieved if lower reflectivity of output coupler and higher Ar concentration are used. The optical-to-optical efficiency as high as 84% achieved by optimizing configuration with the pumped intensity of 5 × 10⁷ W/cm² presented shows that broadband pumped four-level XPAL system has a potential of high optical-to-optical efficiency.

  5. D3R Grand Challenge 2015: Evaluation of Protein-Ligand Pose and Affinity Predictions

    PubMed Central

    Gathiaka, Symon; Liu, Shuai; Chiu, Michael; Yang, Huanwang; Stuckey, Jeanne A; Kang, You Na; Delproposto, Jim; Kubish, Ginger; Dunbar, James B.; Carlson, Heather A.; Burley, Stephen K.; Walters, W. Patrick; Amaro, Rommie E.; Feher, Victoria A.; Gilson, Michael K.

    2017-01-01

    The Drug Design Data Resource (D3R) ran Grand Challenge 2015 between September 2015 and February 2016. Two targets served as the framework to test community docking and scoring methods: (i) HSP90, donated by AbbVie and the Community Structure Activity Resource (CSAR), and (ii) MAP4K4, donated by Genentech. The challenges for both target datasets were conducted in two stages, with the first stage testing pose predictions and the capacity to rank compounds by affinity with minimal structural data; and the second stage testing methods for ranking compounds with knowledge of at least a subset of the ligand-protein poses. An additional sub-challenge provided small groups of chemically similar HSP90 compounds amenable to alchemical calculations of relative binding free energy. Unlike previous blinded Challenges, we did not provide cognate receptors or receptors prepared with hydrogens and likewise did not require a specified crystal structure to be used for pose or affinity prediction in Stage 1. Given the freedom to select from over 200 crystal structures of HSP90 in the PDB, participants employed workflows that tested not only core docking and scoring technologies, but also methods for addressing water-mediated ligand-protein interactions, binding pocket flexibility, and the optimal selection of protein structures for use in docking calculations. Nearly 40 participating groups submitted over 350 prediction sets for Grand Challenge 2015. This overview describes the datasets and the organization of the challenge components, summarizes the results across all submitted predictions, and considers broad conclusions that may be drawn from this collaborative community endeavor. PMID:27696240

  6. D3R grand challenge 2015: Evaluation of protein-ligand pose and affinity predictions

    NASA Astrophysics Data System (ADS)

    Gathiaka, Symon; Liu, Shuai; Chiu, Michael; Yang, Huanwang; Stuckey, Jeanne A.; Kang, You Na; Delproposto, Jim; Kubish, Ginger; Dunbar, James B.; Carlson, Heather A.; Burley, Stephen K.; Walters, W. Patrick; Amaro, Rommie E.; Feher, Victoria A.; Gilson, Michael K.

    2016-09-01

    The Drug Design Data Resource (D3R) ran Grand Challenge 2015 between September 2015 and February 2016. Two targets served as the framework to test community docking and scoring methods: (1) HSP90, donated by AbbVie and the Community Structure Activity Resource (CSAR), and (2) MAP4K4, donated by Genentech. The challenges for both target datasets were conducted in two stages, with the first stage testing pose predictions and the capacity to rank compounds by affinity with minimal structural data; and the second stage testing methods for ranking compounds with knowledge of at least a subset of the ligand-protein poses. An additional sub-challenge provided small groups of chemically similar HSP90 compounds amenable to alchemical calculations of relative binding free energy. Unlike previous blinded Challenges, we did not provide cognate receptors or receptors prepared with hydrogens and likewise did not require a specified crystal structure to be used for pose or affinity prediction in Stage 1. Given the freedom to select from over 200 crystal structures of HSP90 in the PDB, participants employed workflows that tested not only core docking and scoring technologies, but also methods for addressing water-mediated ligand-protein interactions, binding pocket flexibility, and the optimal selection of protein structures for use in docking calculations. Nearly 40 participating groups submitted over 350 prediction sets for Grand Challenge 2015. This overview describes the datasets and the organization of the challenge components, summarizes the results across all submitted predictions, and considers broad conclusions that may be drawn from this collaborative community endeavor.

  7. Comparative study of DPAL and XPAL systems and selection principal of parameters

    NASA Astrophysics Data System (ADS)

    Huang, Wei; Tan, Rongqing; Li, Zhiyong; Han, Gaoce; Li, Hui

    2016-10-01

    A theoretical model based on common pump structure is proposed to analyze the laser output characteristics of DPAL (Diode pumped alkali vapor laser) and XPAL (Exciplex pumped alkali laser) in this paper. The model predicts that an optical-to-optical efficiency approaching 80% can be achieved for continuous-wave four- and five-XPAL systems with broadband pumping which is several times of pumped linewidth for DPAL. Operation parameters including pumped intensity, temperature, cell' s length, mixed gas concentration, pumped linewidth and output mirror reflectivity are analyzed for DPAL and XPAL systems basing on the kinetic model. The result shows a better performance in Cs-Ar XPAL laser with requirements of relatively high Ar concentration, high pumped intensity and high temperature. Comparatively, for Cs-DPAL laser, lower temperature and lower pumped intensity should be acquired. In addition, the predictions of selection principal of temperature and cell's length are also presented. The conception of the equivalent "alkali areal density" is proposed in this paper. It is defined as the product of the alkali density and cell's length. The result shows that the output characteristics of DPAL (or XPAL) system with the same alkali areal density but different temperatures turn out to be equal. It is the areal density that reflects the potential of DPAL or XPAL systems directly. A more detailed analysis of similar influences of cavity parameters with the same areal density is also presented. The detailed results of continuous-wave DPAL and XPAL performances as a function of pumped laser linewidth and mixed gas pressure are presented along with an analysis of influences of output coupler.

  8. Synthesis and Preclinical Evaluation of Sulfonamido-based [11C-Carbonyl]-Carbamates and Ureas for Imaging Monoacylglycerol Lipase

    PubMed Central

    Wang, Lu; Mori, Wakana; Cheng, Ran; Yui, Joji; Hatori, Akiko; Ma, Longle; Zhang, Yiding; Rotstein, Benjamin H.; Fujinaga, Masayuki; Shimoda, Yoko; Yamasaki, Tomoteru; Xie, Lin; Nagai, Yuji; Minamimoto, Takafumi; Higuchi, Makoto; Vasdev, Neil; Zhang, Ming-Rong; Liang, Steven H.

    2016-01-01

    Monoacylglycerol lipase (MAGL) is a 33 kDa member of the serine hydrolase superfamily that preferentially degrades 2-arachidonoylglycerol (2-AG) to arachidonic acid in the endocannabinoid system. Inhibition of MAGL is not only of interest for probing the cannabinoid pathway but also as a therapeutic and diagnostic target for neuroinflammation. Limited attempts have been made to image MAGL in vivo and a suitable PET ligand for this target has yet to be identified and is urgently sought to guide small molecule drug development in this pathway. Herein we synthesized and evaluated the physiochemical properties of an array of eleven sulfonamido-based carbamates and ureas with a series of terminal aryl moieties, linkers and leaving groups. The most potent compounds were a novel MAGL inhibitor, N-((1-(1H-1,2,4-triazole-1-carbonyl)piperidin-4-yl) methyl)-4-chlorobenzenesulfonamide (TZPU; IC50 = 35.9 nM), and the known inhibitor 1,1,1,3,3,3-hexafluoropropan-2-yl 4-(((4-chlorophenyl)sulfonamido) methyl)piperidine-1-carboxylate (SAR127303; IC50 = 39.3 nM), which were also shown to be selective for MAGL over fatty acid amide hydrolase (FAAH), and cannabinoid receptors (CB1 & CB2). Both of these compounds were radiolabeled with carbon-11 via [11C]COCl2, followed by comprehensive ex vivo biodistribution and in vivo PET imaging studies in normal rats to determine their brain permeability, specificity, clearance and metabolism. Whereas TZPU did not show adequate specificity to warrant further evaluation, [11C]SAR127303 was advanced for preliminary PET neuroimaging studies in nonhuman primate. The tracer showed good brain permeability (ca. 1 SUV) and heterogeneous regional brain distribution which is consistent with the distribution of MAGL. PMID:27279908

  9. Broad-spectrum in vitro antibacterial activities of clay minerals against antibiotic-susceptible and antibiotic-resistant bacterial pathogens

    PubMed Central

    HAYDEL, SHELLEY E.; REMENIH, CHRISTINE M.; WILLIAMS, LYNDA B.

    2008-01-01

    SYNOPSIS Objectives The capacity to properly address the worldwide incidence of infectious diseases lies in the ability to detect, prevent, and effectively treat these infections. Therefore, identifying and analyzing inhibitory agents are worthwhile endeavors in an era when few new classes of effective antimicrobials have been developed. The use of geological nanomaterials to heal skin infections has been evident since the earliest recorded history, and specific clay minerals may prove valuable in the treatment of bacterial diseases, including infections for which there are no effective antibiotics, such as Buruli ulcer and multi-drug resistant infections. Methods We have subjected two iron-rich clay minerals, which have previously been used to treat Buruli ulcer patients, to broth culture testing of antibiotic-susceptible and -resistant pathogenic bacteria to assess the feasibility of using clay minerals as therapeutic agents. Results One specific mineral, CsAg02, demonstrated bactericidal activity against pathogenic Escherichia coli, extended-spectrum β-lactamase (ESBL) E. coli, S. enterica serovar Typhimurium, Pseudomonas aeruginosa, and Mycobacterium marinum and a combined bacteriostatic/bactericidal effect against Staphylococcus aureus, penicillin-resistant S. aureus (PRSA), methicillin-resistant S. aureus (MRSA), and Mycobacterium smegmatis, while another mineral with similar structure and bulk crystal chemistry, CsAr02, had no effect on or enhanced bacterial growth. The <0.2 μm fraction of CsAg02 and CsAg02 heated to 200°C or 550°C retained bactericidal activity, while cation-exchanged CsAg02 and CsAg02 heated to 900°C no longer killed E. coli. Conclusions Our results indicate that specific mineral products have intrinsic, heat-stable antibacterial properties, which could provide an inexpensive treatment against numerous human bacterial infections. PMID:18070832

  10. Benchmarking the QUAD4/TRIA3 element

    NASA Technical Reports Server (NTRS)

    Pitrof, Stephen M.; Venkayya, Vipperla B.

    1993-01-01

    The QUAD4 and TRIA3 elements are the primary plate/shell elements in NASTRAN. These elements enable the user to analyze thin plate/shell structures for membrane, bending and shear phenomena. They are also very new elements in the NASTRAN library. These elements are extremely versatile and constitute a substantially enhanced analysis capability in NASTRAN. However, with the versatility comes the burden of understanding a myriad of modeling implications and their effect on accuracy and analysis quality. The validity of many aspects of these elements were established through a series of benchmark problem results and comparison with those available in the literature and obtained from other programs like MSC/NASTRAN and CSAR/NASTRAN. Never-the-less such a comparison is never complete because of the new and creative use of these elements in complex modeling situations. One of the important features of QUAD4 and TRIA3 elements is the offset capability which allows the midsurface of the plate to be noncoincident with the surface of the grid points. None of the previous elements, with the exception of bar (beam), has this capability. The offset capability played a crucial role in the design of QUAD4 and TRIA3 elements. It allowed modeling layered composites, laminated plates and sandwich plates with the metal and composite face sheets. Even though the basic implementation of the offset capability is found to be sound in the previous applications, there is some uncertainty in relatively simple applications. The main purpose of this paper is to test the integrity of the offset capability and provide guidelines for its effective use. For the purpose of simplicity, references in this paper to the QUAD4 element will also include the TRIA3 element.

  11. Quantitative PET of liver functions

    PubMed Central

    Keiding, Susanne; Sørensen, Michael; Frisch, Kim; Gormsen, Lars C; Munk, Ole Lajord

    2018-01-01

    Improved understanding of liver physiology and pathophysiology is urgently needed to assist the choice of new and upcoming therapeutic modalities for patients with liver diseases. In this review, we focus on functional PET of the liver: 1) Dynamic PET with 2-deoxy-2-[18F]fluoro-D-galactose (18F-FDGal) provides quantitative images of the hepatic metabolic clearance K met (mL blood/min/mL liver tissue) of regional and whole-liver hepatic metabolic function. Standard-uptake-value (SUV) from a static liver 18F-FDGal PET/CT scan can replace K met and is currently used clinically. 2) Dynamic liver PET/CT in humans with 11C-palmitate and with the conjugated bile acid tracer [N-methyl-11C]cholylsarcosine (11C-CSar) can distinguish between individual intrahepatic transport steps in hepatic lipid metabolism and in hepatic transport of bile acid from blood to bile, respectively, showing diagnostic potential for individual patients. 3) Standard compartment analysis of dynamic PET data can lead to physiological inconsistencies, such as a unidirectional hepatic clearance of tracer from blood (K 1; mL blood/min/mL liver tissue) greater than the hepatic blood perfusion. We developed a new microvascular compartment model with more physiology, by including tracer uptake into the hepatocytes from the blood flowing through the sinusoids, backflux from hepatocytes into the sinusoidal blood, and re-uptake along the sinusoidal path. Dynamic PET data include information on liver physiology which cannot be extracted using a standard compartment model. In conclusion, SUV of non-invasive static PET with 18F-FDGal provides a clinically useful measurement of regional and whole-liver hepatic metabolic function. Secondly, assessment of individual intrahepatic transport steps is a notable feature of dynamic liver PET. PMID:29755841

  12. Quantitative PET of liver functions.

    PubMed

    Keiding, Susanne; Sørensen, Michael; Frisch, Kim; Gormsen, Lars C; Munk, Ole Lajord

    2018-01-01

    Improved understanding of liver physiology and pathophysiology is urgently needed to assist the choice of new and upcoming therapeutic modalities for patients with liver diseases. In this review, we focus on functional PET of the liver: 1) Dynamic PET with 2-deoxy-2-[ 18 F]fluoro- D -galactose ( 18 F-FDGal) provides quantitative images of the hepatic metabolic clearance K met (mL blood/min/mL liver tissue) of regional and whole-liver hepatic metabolic function. Standard-uptake-value ( SUV ) from a static liver 18 F-FDGal PET/CT scan can replace K met and is currently used clinically. 2) Dynamic liver PET/CT in humans with 11 C-palmitate and with the conjugated bile acid tracer [ N -methyl- 11 C]cholylsarcosine ( 11 C-CSar) can distinguish between individual intrahepatic transport steps in hepatic lipid metabolism and in hepatic transport of bile acid from blood to bile, respectively, showing diagnostic potential for individual patients. 3) Standard compartment analysis of dynamic PET data can lead to physiological inconsistencies, such as a unidirectional hepatic clearance of tracer from blood ( K 1 ; mL blood/min/mL liver tissue) greater than the hepatic blood perfusion. We developed a new microvascular compartment model with more physiology, by including tracer uptake into the hepatocytes from the blood flowing through the sinusoids, backflux from hepatocytes into the sinusoidal blood, and re-uptake along the sinusoidal path. Dynamic PET data include information on liver physiology which cannot be extracted using a standard compartment model. In conclusion , SUV of non-invasive static PET with 18 F-FDGal provides a clinically useful measurement of regional and whole-liver hepatic metabolic function. Secondly, assessment of individual intrahepatic transport steps is a notable feature of dynamic liver PET.

  13. COMET-LICSAR: Systematic Deformation Monitoring of Fault Zones and Volcanoes with the Sentinel-1 Constellation

    NASA Astrophysics Data System (ADS)

    Spaans, K.; Wright, T. J.; Hooper, A. J.; Hatton, E. L.; González, P. J.; Bhattarai, S.; Biggs, J.; Crippa, P.; Ebmeier, S. K.; Elliott, J.; Gaddes, M.; Li, Z.; Parsons, B.; Qiu, Q.; McDougall, A.; Walters, R. J.; Weiss, J. R.; Ziebart, M.

    2017-12-01

    The Sentinel-1 constellation represents a major advance in our ability to monitor our planet's hazardous tectonic and volcanic zones. Here we present the latest progress from COMET (*), where we are now providing deformation results to the community for volcanoes and the tectonic belts (**). COMET now responds routinely to most significant continental earthquakes - Sentinel-1 allows us to do this within a few days for most earthquakes. For example, after the M7.8 Kaikoura (New Zealand) earthquake we supplied a processed interferogram to the community just 5 hours and 37 minutes after the Sentinel-1 acquisition. By the end of 2017, we will be producing interferogram products systematically for all earthquakes larger than M 6.0. For deformation data to be useful for preparedness, we need accuracy on the order of 1 mm/yr or better. This requires mass processing of long time series of radar acquisitions. We are currently (July 2017) processing interferograms systematically for the entire Alpine-Himalayan belt ( 9000 x 2000 km) using our LiCSAR chain, making interferograms and coherence products available to the community. By December 2017, we plan to process a wider tectonic area and the majority of subaerial volcanoes. We currently serve displacement and coherence grids, but plan to provide average deformation rates and time series. Results are available through our dedicated portal (**), and are being linked to the ESA G-TEP and EPOS during 2017. We will show the latest results for tectonics and volcanism, and discuss how these can be used to build value-added products, including (i) maps of tectonic strain (ii) maps of seismic hazard (iii) volcano deformation alerts. The accuracy of these products will improve as the number of data products acquired by Sentinel-1 increases, and as the time series lengthen. *http://comet.nerc.ac.uk**http://comet.nerc.ac.uk/COMET-LiCS-portal/

  14. COMET-LICSAR: Systematic Deformation Monitoring of Fault Zones and Volcanoes with the Sentinel-1 Constellation

    NASA Astrophysics Data System (ADS)

    Spaans, K.; Wright, T. J.; Hooper, A. J.; Hatton, E. L.; González, P. J.; Bhattarai, S.; Biggs, J.; Crippa, P.; Ebmeier, S. K.; Elliott, J.; Gaddes, M.; Li, Z.; Parsons, B.; Qiu, Q.; McDougall, A.; Walters, R. J.; Weiss, J. R.; Ziebart, M.

    2016-12-01

    The Sentinel-1 constellation represents a major advance in our ability to monitor our planet's hazardous tectonic and volcanic zones. Here we present the latest progress from COMET (*), where we are now providing deformation results to the community for volcanoes and the tectonic belts (**). COMET now responds routinely to most significant continental earthquakes - Sentinel-1 allows us to do this within a few days for most earthquakes. For example, after the M7.8 Kaikoura (New Zealand) earthquake we supplied a processed interferogram to the community just 5 hours and 37 minutes after the Sentinel-1 acquisition. By the end of 2017, we will be producing interferogram products systematically for all earthquakes larger than M 6.0. For deformation data to be useful for preparedness, we need accuracy on the order of 1 mm/yr or better. This requires mass processing of long time series of radar acquisitions. We are currently (July 2017) processing interferograms systematically for the entire Alpine-Himalayan belt ( 9000 x 2000 km) using our LiCSAR chain, making interferograms and coherence products available to the community. By December 2017, we plan to process a wider tectonic area and the majority of subaerial volcanoes. We currently serve displacement and coherence grids, but plan to provide average deformation rates and time series. Results are available through our dedicated portal (**), and are being linked to the ESA G-TEP and EPOS during 2017. We will show the latest results for tectonics and volcanism, and discuss how these can be used to build value-added products, including (i) maps of tectonic strain (ii) maps of seismic hazard (iii) volcano deformation alerts. The accuracy of these products will improve as the number of data products acquired by Sentinel-1 increases, and as the time series lengthen. *http://comet.nerc.ac.uk**http://comet.nerc.ac.uk/COMET-LiCS-portal/

  15. Preliminary Assessment of Wind and Wave Retrieval from Chinese Gaofen-3 SAR Imagery

    PubMed Central

    Sun, Jian

    2017-01-01

    The Chinese Gaofen-3 (GF-3) synthetic aperture radar (SAR) launched by the China Academy of Space Technology (CAST) has operated at C-band since September 2016. To date, we have collected 16/42 images in vertical-vertical (VV)/horizontal-horizontal (HH) polarization, covering the National Data Buoy Center (NDBC) buoy measurements of the National Oceanic and Atmospheric Administration (NOAA) around U.S. western coastal waters. Wind speeds from NDBC in situ buoys are up to 15 m/s and buoy-measured significant wave height (SWH) has ranged from 0.5 m to 3 m. In this study, winds were retrieved using the geophysical model function (GMF) together with the polarization ratio (PR) model and waves were retrieved using a new empirical algorithm based on SAR cutoff wavelength in satellite flight direction, herein called CSAR_WAVE. Validation against buoy measurements shows a 1.4/1.9 m/s root mean square error (RMSE) of wind speed and a 24/23% scatter index (SI) of SWH for VV/HH polarization. In addition, wind and wave retrieval results from 166 GF-3 images were compared with the European Centre for Medium-Range Weather Forecasts (ECMWF) re-analysis winds, as well as the SWH from the WaveWatch-III model, respectively. Comparisons show a 2.0 m/s RMSE for wind speed with a 36% SI of SWH for VV-polarization and a 2.2 m/s RMSE for wind speed with a 37% SI of SWH for HH-polarization. Our work gives a preliminary assessment of the wind and wave retrieval results from GF-3 SAR images for the first time and will provide guidance for marine applications of GF-3 SAR. PMID:28757571

  16. istar: a web platform for large-scale protein-ligand docking.

    PubMed

    Li, Hongjian; Leung, Kwong-Sak; Ballester, Pedro J; Wong, Man-Hon

    2014-01-01

    Protein-ligand docking is a key computational method in the design of starting points for the drug discovery process. We are motivated by the desire to automate large-scale docking using our popular docking engine idock and thus have developed a publicly-accessible web platform called istar. Without tedious software installation, users can submit jobs using our website. Our istar website supports 1) filtering ligands by desired molecular properties and previewing the number of ligands to dock, 2) monitoring job progress in real time, and 3) visualizing ligand conformations and outputting free energy and ligand efficiency predicted by idock, binding affinity predicted by RF-Score, putative hydrogen bonds, and supplier information for easy purchase, three useful features commonly lacked on other online docking platforms like DOCK Blaster or iScreen. We have collected 17,224,424 ligands from the All Clean subset of the ZINC database, and revamped our docking engine idock to version 2.0, further improving docking speed and accuracy, and integrating RF-Score as an alternative rescoring function. To compare idock 2.0 with the state-of-the-art AutoDock Vina 1.1.2, we have carried out a rescoring benchmark and a redocking benchmark on the 2,897 and 343 protein-ligand complexes of PDBbind v2012 refined set and CSAR NRC HiQ Set 24Sept2010 respectively, and an execution time benchmark on 12 diverse proteins and 3,000 ligands of different molecular weight. Results show that, under various scenarios, idock achieves comparable success rates while outperforming AutoDock Vina in terms of docking speed by at least 8.69 times and at most 37.51 times. When evaluated on the PDBbind v2012 core set, our istar platform combining with RF-Score manages to reproduce Pearson's correlation coefficient and Spearman's correlation coefficient of as high as 0.855 and 0.859 respectively between the experimental binding affinity and the predicted binding affinity of the docked conformation. istar

  17. Space-based observatories providing key data for climate change applications

    NASA Astrophysics Data System (ADS)

    Lecomte, J.; Juillet, J. J.

    2016-12-01

    The Sentinel-1 & 3 mission are part of the Copernicus program, previously known as GMES (Global Monitoring for Environment and Security), whose overall objective is to support Europe's goals regarding sustainable development and global governance of the environment by providing timely and quality data, information, services and knowledge. This European Earth Observation program is led by the European Commission and the space infrastructure is developed under the European Space Agency leadership. Many services will be developed through the Copernicus program among different thematic areas. The climate change is one of this thematic area and the Sentinel-1 & 3 satellites will provide key space-based observations in this area. The Sentinel-1 mission is based on a constellation of 2 identical satellites each one embarking C-SAR Instrument and provides capability for continuous radar mapping of the Earth with enhanced revisit frequency, coverage, timeliness and reliability for operational services and applications requiring long time series. In particular, Sentinel 1 provides all-weather, day-and-night estimates of soil moisture, wind speed and direction, sea ice, continental ice sheets and glaciers. The Sentinel-3 mission will mainly be devoted to the provision of Ocean observation data in routine, long term (20 years of operations) and continuous fashion with a consistent quality and a very high level of availability. Among these data, very accurate surface temperatures and topography measurements will be provided and will constitute key indicators, once ingested in climate change models, for identifying climate drivers and expected climate impacts. The paper will briefly recall the satellite architectures, their main characteristics and performance. The inflight performance and key features of their images or data of the 3 satellites namely Sentinel 1A, 1B and 3A will be reviewed to demonstrate the quality and high scientific potential of the data as well as their

  18. Sentinel-1 backscatter sensitivity to vegetation dynamics at the field scale.

    NASA Astrophysics Data System (ADS)

    Vreugdenhil, Mariette; Eder, Alexander; Bauer-Marschallinger, Bernhard; Cao, Senmao; Naeimi, Vahid; Oismueller, Markus; Strauss, Peter; Wagner, Wolfgang

    2017-04-01

    Vegetation monitoring is pivotal to improve our understanding of the role vegetation dynamics play in the global carbon-, energy- and hydrological cycle. And with the increasing stress on food supply due to the growing world populating and changing climate, vegetation monitoring is of great importance in agricultural areas. By closely tracking crop conditions, droughts and subsequent crop losses could be mitigated. Sensors operating in the microwave domain are sensitive to several surface characteristics, including soil moisture and vegetation. Hence, spaceborne microwave remote sensing provides the means to monitor vegetation and soil conditions on different scales, ranging from field scale to global scale. However, it also presents a challenge since multiple combinations of soil and vegetation characteristics can lead to a similar measurement. Copernicus Sentinel-1 (S-1) is a series of two satellites, developed by the European Space Agency (ESA) , which carry C-band Synthetic Aperture Radars. The C-SAR sensors provide VV, HH, VH and HV backscatter at a 5 m by 20 m spatial resolution. The temporal revisit time of the two satellites is 3-6 days. With their unique capacity for temporally dense and spatially detailed data, the S-1 satellite series provides for the first time the chance to investigate vegetation dynamics at high temporal and spatial resolution. The aim of this study is to assess the sensitivity of Sentinel-1 backscatter to vegetation dynamics. The study is performed in the Hydrological Open Air Laboratory (HOAL), which is a 66 hectare large catchment located in Petzenkirchen, Austria. In the HOAL several vegetation parameters were measured during the course of the growing season (2016) at the overpass time of S-1a. Vegetation height was obtained ten times for the whole catchment, using georeferenced photos made by a motorized paraglider and a Land Surface Model. In addition, vegetation water content, Leaf Area Index and soil moisture were measured in

  19. Sentinel-1 Mission Overview and Implementation Status

    NASA Astrophysics Data System (ADS)

    Davidson, M.; Attema, E.; Snoeij, P.; Levrini, G.

    2009-04-01

    Sentinel-1 is an imaging radar mission at C-band consisting of a constellation of two satellites aimed at providing continuity of all-weather day-and-night supply of imagery for user services. Special emphasis is placed on services identified in ESA's GMES service elements program and on projects funded by the European Union Framework Programmes. Three priorities (fast-track services) for the mission have been identified by user consultation working groups of the European Union: Marine Core Services, Land Monitoring and Emergency Services. These cover applications such as: - Monitoring sea ice zones and the arctic environment - Surveillance of marine environment - Monitoring land surface motion risks - Mapping of land surfaces: forest, water and soil, agriculture - Mapping in support of humanitarian aid in crisis situations. The Sentinel 1 space segment will be designed and built by an industrial consortium with Thales Alenia Space Italia as prime contractor and EADS Astrium GmbH as C-SAR instrument responsible. Data products from current and previous ESA missions including ERS-1, ERS-2 and Envisat missions form the basis for many of the pilot GMES services. Consequently Sentinel-1 data maintain data quality levels of the Agency‘s previous SAR missions in terms of spatial resolution, sensitivity, accuracy, polarization and wavelength. Nonetheless, the Sentinel-1 synthetic aperture radar (SAR) constellation represents a completely new approach to SAR mission design by ESA in direct response to the operational needs for SAR data expressed under the EU-ESA Global Monitoring for Environment and Security (GMES) programme. The Sentinel-1 constellation is expected to provide near daily coverage over Europe and Canada, global coverage all independent of weather with delivery of radar data within 1 hour of acquisition - all vast improvements with respect to the existing SAR systems. The continuity of C-band SAR data combined with the greatly improved data provision is