Expression profile of circular RNAs in human gastric cancer tissues

PubMed Central

Huang, You-Sheng; Jie, Na; Zou, Ke-Jian; Weng, Yang

2017-01-01

Circular RNAs (circRNAs) represent a newly identified class of non-coding RNA molecules, which interfere with gene transcription by adsorbing microRNAs (miRNAs). CircRNAs serve important roles in disease development and have the potential to serve as a novel class of biomarkers for clinical diagnosis. However, the role of circRNAs in the occurrence and development of gastric cancer (GC) remains unclear. In the present study, the expression profiles of circRNAs were compared between GC and adjacent normal tissues using a circRNA microarray, following which quantitative polymerase chain reaction (qPCR) was used to confirm the results of the circRNA microarray. Compared with the adjacent, normal mucosal tissues, 16 circRNAs were upregulated and 84 circRNAs were downregulated in GC. A total of 10 circRNAs were selected for validation in three pairs of GC and adjacent noncancerous tissues. The qPCR results were consistent with the findings of the microarray-based expression analysis. Of the circRNAs studied, only circRNA-0026 (hsa_circ_0000026) exhibited significantly different expression in GC (2.8-fold, P=0.001). Furthermore, online Database for Annotation, Visualization and Integrated Discovery annotation was used to predict circRNA-targeted miRNA-gene interactions. The analysis revealed that circRNA-0026 may regulate RNA transcription, RNA metabolism, gene expression, gene silencing and other biological functions in GC. In conclusion, differential expression of circRNAs may be associated with GC tumorigenesis, and circRNA-0026 is a promising biomarker for GC diagnosis and targeted therapy. PMID:28737829

Circular RNA hsa_circ_0008344 regulates glioblastoma cell proliferation, migration, invasion, and apoptosis.

PubMed

Zhou, Jinxu; Wang, Hongxiang; Chu, Junsheng; Huang, Qilin; Li, Guangxu; Yan, Yong; Xu, Tao; Chen, Juxiang; Wang, Yuhai

2018-04-24

Recent studies have found circular RNAs (circRNAs) involved in the biological process of cancers. However, little is known about their functional roles in glioblastoma. Human circRNA microarray analysis was performed to screen the expression profile of circRNAs in IDH1 wild-type glioblastoma tissue. The expression of hsa_circ_0008344 in glioblastoma and normal brain samples was quantified by qRT-PCR. Functional experiments were performed to investigate the biological functions of hsa_circ_0008344, including MTT assay, colony formation assay, transwell assay, and cell apoptosis assay. CircRNA microarray revealed a total of 417 abnormally expressed circRNAs (>1.5-fold, P < .05) in glioblastoma tissue compared with the adjacent normal brain. Hsa_circ_0008344, among the top differentially expressed circRNAs, was significantly upregulated in IDH1 wild-type glioblastoma. Further in vitro studies showed that knockdown of hsa_circ_0008344 suppressed glioblastoma cell proliferation, colony formation, migration, and invasion, but increased cell apoptotic rate. Hsa_circ_0008344 is upregulated in glioblastoma and may contribute to the progression of this malignancy. © 2018 Wiley Periodicals, Inc.

High-Throughput Data of Circular RNA Profiles in Human Temporal Cortex Tissue Reveals Novel Insights into Temporal Lobe Epilepsy.

PubMed

Li, Jiaxin; Lin, Haijun; Sun, Zhenrong; Kong, Guanyi; Yan, Xu; Wang, Yujiao; Wang, Xiaoxuan; Wen, Yanhua; Liu, Xiang; Zheng, Hongkun; Jia, Mei; Shi, Zhongfang; Xu, Rong; Yang, Shaohua; Yuan, Fang

2018-01-01

Circular RNAs (circRNAs) are a class of long noncoding RNAs with a closed loop structure that regulate gene expression as microRNA sponges. CircRNAs are more enriched in brain tissue, but knowledge of the role of circRNAs in temporal lobe epilepsy (TLE) has remained limited. This study is the first to identify the global expression profiles and characteristics of circRNAs in human temporal cortex tissue from TLE patients. Temporal cortices were collected from 17 TLE patients and 17 non-TLE patients. Total RNA was isolated, and high-throughput sequencing was used to profile the transcriptome of dysregulated circRNAs. Quantitative PCR was performed for the validation of changed circRNAs. In total, 78983 circRNAs, including 15.29% known and 84.71% novel circRNAs, were detected in this study. Intriguingly, 442 circRNAs were differentially expressed between the TLE and non-TLE groups (fold change≥2.0 and FDR≤0.05). Of these circRNAs, 188 were up-regulated, and 254 were down-regulated in the TLE patient group. Eight circRNAs were validated by real-time PCR. Remarkably, circ-EFCAB2 was intensely up-regulated, while circ-DROSHA expression was significantly lower in the TLE group than in the non-TLE group (P<0.05). Bioinformatic analysis revealed that circ-EFCAB2 binds to miR-485-5p to increase the expression level of the ion channel CLCN6, while circ-DROSHA interacts with miR-1252-5p to decrease the expression level of ATP1A2. The dysregulations of circRNAs may reflect the pathogenesis of TLE and circ-EFCAB2 and circ-DROSHA might be potential therapeutic targets and biomarkers in TLE patients. © 2018 The Author(s). Published by S. Karger AG, Basel.

Circular BANP, an upregulated circular RNA that modulates cell proliferation in colorectal cancer.

PubMed

Zhu, Mingchen; Xu, Yijun; Chen, Yun; Yan, Feng

2017-04-01

Circular RNAs (circRNAs) are recently identified as widespread and diverse endogenous noncoding RNAs that may harbor vital functions in human and animals. However, the role of circRNAs in the process of tumorigenesis and development of colorectal cancer (CRC) remains vague. Here we characterized the circRNA expression profile from three paired CRC cancerous and adjacent normal tissues by human circRNA array, and identified 136 significantly overexpressed circRNAs and 243 downregulated circRNAs in CRC cancerous tissues (>2-fold changes). We further validated one circRNA generated from Exon 5-11 of BANP gene, termed circ-BANP. In addition, RT-PCR result showed that circ-BANP was overexpressed in 35 CRC cancerous tissues. Knockdown of circ-BANP with siRNA significantly attenuate the proliferation of CRC cells. In summary, our findings demonstrated that dysregulated circ-BANP appears to have an important role in CRC cells and could serve as a prognostic and therapeutic marker for CRC. Copyright © 2016 Elsevier Masson SAS. All rights reserved.

CircRNA-0004904, CircRNA-0001855, and PAPP-A: Potential Novel Biomarkers for the Prediction of Preeclampsia.

PubMed

Jiang, Min; Lash, Gendie E; Zhao, Xueqing; Long, Yan; Guo, Caijiao; Yang, Hongling

2018-05-07

Circular RNAs (circRNAs) are transcribed prevalently in the genome; however, their potential roles in multiple cardiovascular diseases, particularly preeclampsia (PE), are not yet well understood. This study investigated the expression profiles of circRNAs and explored circRNA-mediated pregnancy-associated plasma protein A (PAPP-A) expression as a potential biomarker for PE before 20 weeks of pregnancy. A nested case-control two-phase screening/validation study was performed in pregnant women before 20 weeks of gestation (before clinical diagnosis) at Guangzhou Women and Children's Medical Center from 2012 to 2015. In the screening phase, circRNA expression profiles of blood cells were assessed using a human circRNA microarray, which was designed to detect simultaneously 5396 circRNAs, in 5 patients with PE and 5 age- and gestational week-matched controls. In the validation phase, 18 circRNAs in blood cells predicted by bioinformatics tools were validated by quantitative reverse transcription PCR in a cohort of 60 patients (PE and age-, gestational week-, and sample storage time-matched controls). Then, we examined the involvement of circRNAs in PE-related pathways via interactions with miRNAs by multiple bioinformatics approaches. Bioinformatics analysis predicted that hsa_circ_0004904 and hsa_circ_0001855 miRNA sponges directly target PAPP-A. PAPP-A was verified in the serum of the same cohort of patients using an enzyme-linked immunosorbent assay. Finally, we combined PAPP-A with circRNAs to create a novel preclinical diagnostic model for PE with logistic regression and evaluated the efficiency of this model with receiver operating curve analysis. Volcano plot analysis using various parameters showed that circRNAs were differentially expressed among both groups (P < 0.01, fold change > 2). In the screening phase, we found that 2178 circRNAs were differentially expressed between the control and PE groups, in which 884 circRNAs were downregulated and 1294 circRNAs were upregulated in the PE group compared with the control group. In the validation phase, two circRNAs, hsa_circ_0004904 and hsa_circ_0001855, were significantly upregulated in PE patients compared with healthy pregnant women (P < 0.05). PAPP-A expression levels, related to the two circRNAs based on bioinformatics prediction, were increased in the PE group compared with the control group. The area under the curve of the combined model was 0.94 in the predicted PE subjects. This is the first study to report circRNA profiling in patients with PE prior to the onset of symptoms. Our data suggested that hsa_circ_0004904 and hsa_circ_0001855 combined with PAPP-A might be promising biomarkers for the detection of PE. Moreover, circRNAs may provide new insights into the potential mechanisms underlying the pathophysiology of PE. © 2018 The Author(s). Published by S. Karger AG, Basel.

RNA-binding Protein Trinucleotide repeat-containing 6A Regulates the Formation of Circular RNA 0006916, with Important Functions in Lung Cancer Cells.

PubMed

Dai, Xin; Zhang, Nan; Cheng, Ying; Yang, Ti; Chen, Yingnan; Liu, Zhenzhong; Wang, Zhishan; Yang, Chengfeng; Jiang, Yiguo

2018-05-03

Circular RNAs (circRNAs) are widespread and diverse endogenous RNAs distinct from traditional linear RNAs, which may regulate gene expression in eukaryotes. However, the function of human circRNAs, including their potential role in lung cancer, remains largely unknown. We screened the circRNA circ0006916, which was evidently down-regulated in 16HBE-T cells (anti-benzopyrene-trans-7, 8-dihydrodiol-9, 10-epoxide-transformed human bronchial epithelial cells), and in A549 and H460 cell lines. Silencing of circ0006916, but not its parental gene homer scaffolding protein 1 (HOMER1), promoted cell proliferation via speeding up the cell cycle process rather than by inhibiting apoptosis; conversely, overexpression of circ0006916 had the opposite effect. Luciferase screening assay indicated that circ0006916 bound to miR-522-3p and inhibited pleckstrin homology domain and leucine rich repeat protein phosphatase 1 (PHLPP1) activity. We also explored the effect of the RNA-binding protein trinucleotide repeat-containing 6A (TNRC6A) on circ0006916 production. Circ0006916 expression was decreased after silencing TNRC6A. TNRC6A bound to the intron regions around the circRNA-forming exons of circ0006916, as shown by RNA immunoprecipitation assay combined with sequencing analysis. The association of circ0006916 with TNRC6A was further verified by RNA pull-down assays. We then constructed a carrier and confirmed that TNRC6A binding to the flanked intron region of circ0006916 was necessary for generation of circ0006916. These results demonstrate that TNRC6A regulates the biogenesis of the circRNA circ0006916, which has a regulatory role in cell growth.

Circular RNA hsa_circ_0001982 Promotes Breast Cancer Cell Carcinogenesis Through Decreasing miR-143.

PubMed

Tang, Yi-Yin; Zhao, Ping; Zou, Tian-Ning; Duan, Jia-Jun; Zhi, Rong; Yang, Si-Yuan; Yang, De-Chun; Wang, Xiao-Li

2017-11-01

Circular RNAs (circRNAs) are a type of noncoding RNAs generated from back-splicing, which have been verified to mediate multiple tumorigenesis. With the development of high-throughput sequencing, massive circRNAs are discovered in tumorous tissue. However, the potential physiological effect of circRNAs in breast cancer is still unknown. The purpose of this study is to investigate the expression profile of circRNA in breast cancer tissue and explore the in-depth regulatory mechanism in breast cancer tumorigenesis. In the present study, we screened the circRNA expression profiles in breast cancer tissue using circRNA microarray analysis. Totally 1705 circRNAs were identified to be significantly aberrant. Among these dysregulated circRNAs, hsa_circ_0001982 was markedly overexpressed in breast cancer tissue and cell lines. Bioinformatics analysis predicted that miR-143 acted as target of hsa_circ_0001982, which was confirmed by Dual-luciferase reporter assay. Loss-of-function and rescue experiments revealed that hsa_circ_0001982 knockdown suppressed breast cancer cell proliferation and invasion and induced apoptosis by targeting miR-143. In summary, our study preliminarily investigates the circRNA expression in breast cancer tissue and explores the role of competing endogenous RNA (ceRNA) mechanism in the progression, providing a novel insight for breast cancer tumorigenesis.

Circular RNA circZFR contributes to papillary thyroid cancer cell proliferation and invasion by sponging miR-1261 and facilitating C8orf4 expression.

PubMed

Wei, Hong; Pan, Lin; Tao, Deyou; Li, Rongguo

2018-06-08

In recent years, more and more circular RNAs (circRNAs) have been identified in multiple tissues and cells. Increasing evidences show circRNAs play important roles in human cancers. However, the role of circRNAs in papillary thyroid carcinoma (PTC) remains largely unknown. In this study, we identified a new circRNA circZFR that was significantly upregulated in PTC tissues compared to adjacent normal tissues. Furthermore, circZFR expression level was negatively correlated with clinical severity. We found that circZFR knockdown dramatically inhibited the proliferation, migration and invasion of PTC cells in vitro. Mechanistically, we found circZFR could promote C8orf4 expression via serving as a competing endogenous RNA (ceRNA) of miR-1261 in PTC cells. Rescue assays indicated that restoration of C8orf4 significantly attenuated the inhibitory effects of circZFR knockdown on PTC cell proliferation, migration and invasion. In summary, our findings demonstrated that circRNA circZFR exerted oncogenic roles via regulating miR-1261/C8orf4 axis in PTC, which suggested circZFR might be a potential therapeutic target. Copyright © 2018 Elsevier Inc. All rights reserved.

Genome-wide Identification and characterization of circular RNAs in the rice blast fungus Magnaporthe oryzae.

PubMed

Yuan, Jialan; Wang, Zhao; Xing, Junjie; Yang, Qingyong; Chen, Xiao-Lin

2018-04-30

Numerous circRNAs have been identified in different organisms, but little attention has been addressed on fungal circRNAs. Here, we identified a total of 8,848 circRNAs from the model plant pathogenic fungus M. oryzae. 5,840 circRNAs were identified from mycelium, 2,721 circRNAs from conidium, while only 287 circRNAs from both tissues. This indicated that most of the M. oryzae circRNAs were specifically expressed in mycelium or in conidium. Parental genes of circRNAs in mycelium were enriched in basic metabolisms required for normal growth, while in conidium, they were enriched in biogenesis of storages potentially used for infection. M. oryzae circRNAs could also bind to miRNAs, suggesting they may also function as sponges in fungi. This study suggested M. oryzae circRNAs could play important roles in regulation of growth and development.

Circular RNA hsa_circ_0010729 regulates vascular endothelial cell proliferation and apoptosis by targeting the miR-186/HIF-1α axis.

PubMed

Dang, Rui-Ying; Liu, Feng-Li; Li, Yan

2017-08-19

Circular RNAs (circRNAs) are a group of non-protein-coding RNAs generated from back splicing. Emerging evidence has demonstrated its vital regulation on angiogenesis. However, the underlying mechanism responsible for circRNAs effects on vascular endothelial cells is still unclear. In the present study, we screened the expression profiles and investigated the physiological role of circRNAs in hypoxia-induced human umbilical vein endothelial cells (HUVECs). Using circRNA microarray analysis, we identified 36 circRNAs that were significantly dysregulated including 14 down-regulated circRNAs and 22 up-regulated with 2-fold change (P < 0.05). From the over-expressed circRNAs, hsa_circ_0010729 was selected as candidate circRNA and which was validated to be significantly up-regulated using RT-PCR. In loss-of-function experiments of HUVECs, hsa_circ_0010729 knockdown suppressed the proliferation and migration ability and enhanced apoptosis. Bioinformatic prediction and luciferase assay revealed that hsa_circ_0010729 and hypoxia inducible factor 1 alpha (HIF-1α) were targeted by miR-186. Validation experiments verified that hsa_circ_0010729 was co-expressed with HIF-1α, being negatively correlated with miR-186. Moreover, rescue experiments demonstrated that miR-186 inhibitor could reverse the role of hsa_circ_0010729 knockdown on HUVECs progression. Overall, the present study identifies the crucial regulation of hsa_circ_0010729 on vascular endothelial cell proliferation and apoptosis via targeting miR-186/HIF-1α axis. Copyright © 2017 Elsevier Inc. All rights reserved.

Circular RNA expression profile of articular chondrocytes in an IL-1β-induced mouse model of osteoarthritis.

PubMed

Zhou, Zhibin; Du, Di; Chen, Aimin; Zhu, Lei

2018-02-20

Osteoarthritis (OA) is a widely prevalent degenerative joint disease characterized by articular cartilage degradation and joint inflammation. The pathogenesis of OA remains unclear, leading to a lack of effective treatment. Previous studies have reported that circular RNAs (circRNAs) are involved in the development of various diseases. However, the function of circRNAs and their roles in OA is largely unknown. Therefore, we aimed to investigate changes in circRNA expression and predict their functions in OA by using bioinformatics analysis. An OA model was established in mouse articular chondrocytes (MACs) treated by interleukin-1β (IL-1β), and then the circRNA profile was screened by Next Generation Sequencing. By comparing circRNA expression in IL-1β- treated MACs and normal controls, differentially expressed circRNAs were identified during OA pathogenesis, and differential expression levels of selected circRNAs were validated by qRT-PCR. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses were employed to predict the functions of these circRNAs. Because circRNAs can act as "miRNA sponges", we also constructed a circRNA-miRNA network to predict their functions. A total of 255 circRNAs were found to be differentially expressed in IL-1β-treated MACs (p≤0.05; fold-change≥2) from the expression of the normal controls. Among them, 119 circRNAs were significantly up-regulated, and the other 136 were down-regulated. Seven circRNAs were randomly selected to verify the reliability of these profiles by quantitative qRT-PCR. After obtaining the parental genes of differentially expressed circRNA, the top 30 enrichment GO entries and KEGG pathways were annotated. Then, two significantly differentially expressed circRNAs (mmu-circRNA-30365 and mmu-circRNA-36866) were identified and selected for further analysis, meanwhile a circRNA-miRNA regulation network was created and the top five most likely functional-related target miRNAs of the circRNAs were collected. Although the exact mechanisms and biological functions of these circRNAs in the development of OA need further exploration, our findings do suggest that the differentially expressed circRNAs were involved in the pathogenesis of OA. Thus, our study brings us closer to understanding the pathogenic mechanisms and finding new molecular targets for the clinical treatment of osteoarthritis. Copyright © 2017 Elsevier B.V. All rights reserved.

Circular RNA profile identifies circPVT1 as a proliferative factor and prognostic marker in gastric cancer.

PubMed

Chen, Jie; Li, Yan; Zheng, Qiupeng; Bao, Chunyang; He, Jian; Chen, Bin; Lyu, Dongbin; Zheng, Biqiang; Xu, Yu; Long, Ziwen; Zhou, Ye; Zhu, Huiyan; Wang, Yanong; He, Xianghuo; Shi, Yingqiang; Huang, Shenglin

2017-03-01

Circular RNAs (circRNAs) comprise a novel class of widespread non-coding RNAs that may regulate gene expression in eukaryotes. However, the characterization and function of circRNAs in human cancer remain elusive. Here we identified at least 5500 distinct circRNA candidates and a series of circRNAs that are differentially expressed in gastric cancer (GC) tissues compared with matched normal tissues. We further characterized one circRNA derived from the PVT1 gene and termed it as circPVT1. The expression of circPVT1 is often upregulated in GC tissues due to the amplification of its genomic locus. circPVT1 may promote cell proliferation by acting as a sponge for members of the miR-125 family. The level of circPVT1 was observed as an independent prognostic marker for overall survival and disease-free survival of patients with GC. Our findings suggest that circPVT1 is a novel proliferative factor and prognostic marker in GC. Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.

Differential circular RNAs expression in ovary during oviposition in honey bees.

PubMed

Chen, Xiao; Shi, Wei; Chen, Chao

2018-04-27

Circular RNAs (circRNAs) are non-coding RNAs newly identified and play important roles in RNA regulation. The mechanism and function of circRNAs have been reported in some species. However, little is known regarding circRNAs in honey bees. In this study, we analyzed circRNAs through bioinformatics, and predicted 12,211 circRNAs in the ovary of honey bee queens. 1340, 175 and 100 circRNAs were differentially expressed in comparisons of egg-laying queens vs virgin queens, egg-laying inhibited queens vs egg-laying queens and egg-laying recovery queens vs egg-laying inhibited queens. Further, functional annotation of differentially expressed circRNAs revealed several pathways that are closely related to ovary activation and oviposition, including insulin secretion and calcium signaling pathways. Moreover, the potential interactions among circRNAs, miRNAs, lncRNAs and mRNAs were investigated. Ame_circ_0005197 and ame_circ_0016640 were observed to sponge several reproductive related miRNAs. These findings demonstrate that circRNAs have potential effects in ovary activation and oviposition of honey bees. Copyright © 2018. Published by Elsevier Inc.

Circular RNAs and exosomes in cancer: a mysterious connection.

PubMed

Hou, J; Jiang, W; Zhu, L; Zhong, S; Zhang, H; Li, J; Zhou, S; Yang, S; He, Y; Wang, D; Chen, X; Deng, F; Zhang, Q; Wang, J; Hu, J; Zhang, W; Ding, L; Zhao, J; Tang, J

2018-03-13

Circular RNAs (CircRNAs) are a type of non-coding RNAs (NcRNAs) with a closed annular structure. Until next-generation sequencing (NGS) is developed, the misunderstanding of circRNAs 'splicing error' has changed, and the mysterious veil of circRNAs has been revealed. NGS provides an approach to investigate circRNAs. Many scholars point out that circRNAs may play an important role in many diseases, especially cancer. At the same time, exosomes, as a kind of extracellular vesicles loaded with many contents, are a hotspot in recent years. They can act as 'messengers' between cells, especially in cancer. Lately, it is interesting circRNAs are enriched and stable in exosomes, also called exo-circRNAs, and there have been several articles on circRNAs associated with exosomes. In this review, we summarize the characteristics of circRNAs, especially its main functions. Then, we briefly introduce exosomes and their function in cancer. Finally, the known relation between circRNAs and exosomes is discussed. With further researches, exo-circRNAs may be a novel pathway for cancer diagnosis and targeted therapy.

Overexpressing circular RNA hsa_circ_0002052 impairs osteosarcoma progression via inhibiting Wnt/β-catenin pathway by regulating miR-1205/APC2 axis.

PubMed

Wu, Zhen; Shi, Wangping; Jiang, Chendi

2018-08-25

Circular RNAs (circRNAs) are a novel class of noncoding RNAs, whose importance in cancer has been gradually acknowledged. However, the functions of circRNAs in tumorigenesis have not been fully understood. In the present study, we identified a novel circRNA hsa_circ_0002052 significantly downregulated in osteosarcoma (OS) tissues and cell lines. Moreover, we found that hsa_circ_0002052 could act as a biomarker to indicate the prognosis of OS patients. Functionally, we showed that hsa_circ_0002052 overexpression significantly suppressed OS cell proliferation, migration and invasion while promoting apoptosis in vitro. Similarly, in vivo assay indicated that ectopic expression of hsa_circ_0002052 impaired OS cell growth. In terms of mechanism, we found that hsa_circ_0002052 inhibited miR-1205 while miR1205 targeted APC2, a negative regulator of Wnt/β-catenin signaling pathway. By releasing the inhibition of miR-1205 on APC2 expression, hsa_circ_0002052 suppressed the activation of Wnt/β-catenin signaling pathway, leading to attenuated OS progression. Taken together, our study for the first time revealed a suppressive circRNA hsa_circ_0002052 involved in OS progression. Our study suggested hsa_circ_0002052/miR-1205/APC2/Wnt/β-catenin axis might be a potential target for OS therapy. Copyright © 2018 Elsevier Inc. All rights reserved.

Circular RNA hsa_circ_0001564 regulates osteosarcoma proliferation and apoptosis by acting miRNA sponge.

PubMed

Song, Yu-Ze; Li, Ji-Feng

2018-01-15

Circular RNAs (circRNAs) is a novel type of non-coding RNAs generated from back splicing, which has been verified to mediate multiple tumorigenesis. However, the role of circRNA in osteosarcoma is still unclear. In the present study, we preliminarily screened the circRNAs expression profiles in osteosarcoma and investigated the potential regulation mechanism. The circRNAs expression profiles in osteosarcoma were screened using circRNA microarray analysis, and results showed that there were 1152 circRNAs up-regulated and 915 circRNAs down-regulated in tumor tissue compared to adjacent tissue. Hsa_circ_0001564, located at 5q35.3 and its associated-gene symbol is CANX, was one of the significantly overexpressed circRNAs in osteosarcoma tissue, as well as in osteosarcoma cell lines. In functional experiments, hsa_circ_001564 knockdown significantly suppressed the proliferation activity, induced cell cycle arrest in G0/G1 phase, and promoted apoptosis in HOS and MG-63 cells. Subsequently, we explored the probable mechanism of hsa_circ_001564, and fortunately, bioinformatics analysis revealed that miR-29c-3p contained the complementary binding region with hsa_circ_0001564, which was confirmed by dual-luciferase reporter assay. Moreover, rescue experiments illustrated that miR-29c-3p could reverse the oncogenesis effect of hsa_circ_001564. Our study discovers that hsa_circ_0001564 acts as miR-29c-3p sponge to mediate the tumorigenicity, which could act as a potential biomarker for the osteosarcoma and provide a novel insight for competing endogenous RNAs (ceRNAs) mechanism in osteosarcoma. Copyright © 2017 Elsevier Inc. All rights reserved.

Investigation of Oxygen and Hydrogen Associated Charge Trapping and Electrical Characteristics of Silicon Nitride Films for Mnos Devices.

NASA Astrophysics Data System (ADS)

Xu, Dan

Silicon nitride (Si_3N _4) and silicon oxynitride (SiO _{rm x}N_ {rm y}) films in the form of metal -nitride-oxide-silicon (MNOS) structures were investigated to determine the correlation between their electrical characteristics and the nature of the chemical bonding so as to provide guidelines for the next generation of nonvolatile memory devices. The photoionization cross section of electron traps in the oxynitride films of MNOS devices were also measured as a function photon energy and oxygen concentration of the silicon oxynitride films. An effective photoionization cross section associated with electron traps was determined to be between 4.9 times 10 ^{-19} cm^2 to 10.8 times 10^ {-19} cm^2 over the photon energy of 2.06 eV to 3.1 eV for silicon oxynitride films containing 7 atomic % to 17 atomic % of oxygen. The interface state density of metal-nitride-oxide -silicon (MNOS) devices was investigated as a function of processing conditions. The interface state density around the midgap of the oxide-silicon interface of the MNOS structures for deposition temperature between 650^ circC to 850^circC increased from 1.1 to 8.2 times 10 ^{11} cm^ {-2}eV^{-1}, for as-deposited silicon nitride films; but decreased from 5.0 to 3.5 times 10^ {11} cm^{-2} eV^{-1}, for films annealed in nitrogen at 900^circC for 60 minutes; and further decreased and remained constant at 1.5 times 10^{11 } cm^{-2}eV ^{-1}, for films which were further annealed in hydrogen at 900^ circC for an additional 60 minutes. The interface state density increase was due to an increase in the loss of hydrogen at the interfacial region and also due to an increase in the thermal stress caused by differences in thermal expansion coefficients of silicon nitride and silicon dioxide films at higher deposition temperatures. The interface state density was subject to two opposing influences; an increase by thermal stress, and a reduction by hydrogen compensation of these states. The photocurrent-voltage (photoI-V) technique in combination with internal photo-electric technique were employed to determine the trapped charge density and its centroid as a function of processing conditions. Results showed that the trapped charge density was of the order of 10^{18} cm ^{-3}. However, the charge trapping density increased about 30% as the atomic percentage of hydrogen decreased from 6 to 2 atomic %.

Expression profile of circular RNAs in infantile hemangioma detected by RNA-Seq.

PubMed

Li, Jun; Li, Qian; Chen, Ling; Gao, Yanli; Li, Jingyun

2018-05-01

Circular RNAs (circRNAs) have emerged as a novel class of widespread non-coding RNAs, and they play crucial roles in various biological processes. However, the characterization and function of circRNAs in infantile hemangioma (IH) remain elusive. In this study, we used RNA-Seq and circRNA prediction to study and characterize the circRNAs in IH tissue and a matched normal skin control. Specific circRNAs were verified using real-time polymerase chain reaction. We found that of the 9811 identified circRNAs, 249 candidates were differentially expressed, including 124 upregulated and 125 downregulated circRNAs in the IH group compared with the matched normal skin control group. A set of differentially expressed circRNAs (in particular, hsa_circRNA001885 and hsa_circRNA006612 expression) were confirmed using qRT-PCR. Gene ontology and pathway analysis revealed that compared to matched normal skin tissues, many processes that were over-represented in IH group were related to the binding, protein binding, gap junction, and focal adhesion. Specific circRNAs were associated with several micro-RNAs (miRNAs) predicted using miRanda. Altogether, our findings highlight the potential importance of circRNAs in the biology of IH and its response to treatment.

Circular RNA WDR77 target FGF-2 to regulate vascular smooth muscle cells proliferation and migration by sponging miR-124.

PubMed

Chen, Junjiang; Cui, Lianqun; Yuan, Jingliang; Zhang, Yuqing; Sang, Hongjun

2017-12-09

Increasing evidences have revealed the important role of circular RNAs (circRNAs) in cardiovascular system disease. Whereas, the expression profiles and in-depth regulation of circRNAs on vascular smooth muscle cells (VSMCs) is still undetermined. In present study, our research team performed circRNAs microarray analysis to present the circRNAs expression profiles in high glucose induced VSMCs in vitro. Results showed that total of 983 circRNAs were discovered to be differentially expressed, and of these, 458 were upregulated and 525 were downregulated. Moreover, 31 circRNAs were up-regulated and 22 circRNAs were down-regulated with 2 fold change (P < 0.05). One of an up-regulated circRNA, circWDR77, was identified. In vitro cell assay, circWDR77 silencing significantly inhibited the proliferation and migration. Bioinformatics methods discovered that miR-124 and fibroblast growth factor 2 (FGF-2) were downstream targets of circWDR77. The RNA sequence complementary binding was validated by RNA immunoprecipitation (RIP) and/or luciferase reporter assay. Further function validation experiments revealed that circWDR77 regulated VSMCs proliferation and migration via targeting miR-124/FGF2. Taken together, present study firstly reveals the circRNAs expression profiles in high glucose induced VSMCs and identifies the role of circWDR77-miR-124-FGF2 regulatory pathway in VSMCs proliferation and migration, which might provide a new theoretical basis for diabetes mellitus correlated vasculopathy. Copyright © 2017 Elsevier Inc. All rights reserved.

Genome-Wide Identification of Circular RNAs as a Novel Class of Putative Biomarkers for an Ocular Surface Disease.

PubMed

Li, Xiu-Miao; Ge, Hui-Min; Yao, Jin; Zhou, Yun-Fan; Yao, Mu-Di; Liu, Chang; Hu, Hai-Tao; Zhu, Yun-Xi; Shan, Kun; Yan, Biao; Jiang, Qin

2018-06-27

Pterygium is a common ocular surface disease with an unknown etiology and threatens vision as it invades into the cornea. Circular RNAs (circRNAs) are a novel class of RNA transcripts that participate in several physiological and pathological processes. However, the role of circRNAs in pathogenesis of pterygium remains largely unknown. Genome-wide circRNA expression profiling was performed to identify pterygium -related circRNAs. GO analysis, pathway analysis, and miRNA response elements analysis was performed to predict the function of differentially expressed circRNAs in pterygium. MTT assays, Ki67 staining, Transwell assay, Hoechst 33342 staining, and Calcein-AM/PI staining were performed to determine the effect of circRNA silencing on pterygium fibroblast and epithelial cell function. Approximately 669 circRNAs were identified to be abnormally expressed in pterygium tissues. GO analysis demonstrated that the host genes of differentially expressed circRNAs were targeted to extracellular matrix organization (ontology: biological process), cytoplasm (ontology: cellular component), and protein binding (ontology: molecular function). Pathway analysis showed that dysregulated circRNAs-mediated regulatory networks were mostly enriched in focal adhesion signaling pathway. Notably, circ_0085020 (circ-LAPTM4B) was shown as a potential biomarker for pterygium. circ_0085020 (circ-LAPTM4B) silencing affected the viability, proliferation, migration, and apoptosis of pterygium fibroblast and epithelial cells in vitro. This study provides evidence that circRNAs are involved in the pathogenesis of pterygium and might constitute promising targets for the therapeutic intervention of pterygium. © 2018 The Author(s). Published by S. Karger AG, Basel.

Screening differential circular RNA expression profiles reveal that hsa_circ_0128298 is a biomarker in the diagnosis and prognosis of hepatocellular carcinoma.

PubMed

Chen, Dawei; Zhang, Chenyue; Lin, Jiamao; Song, Xinyu; Wang, Haiyong

2018-01-01

The aim of this study was to analyze the diagnostic and prognostic values of the circular RNA (circRNA) hsa_circ_0128298 in hepatocellular carcinoma (HCC). The global circRNA expression was measured using circRNA microarray using three pairs of cancer and noncancerous tissues from HCC patients. The microarray analysis revealed that two circRNAs were differentially expressed in the three pairs of cancerous and noncancerous tissues. The higher levels of two representative circRNAs, such as hsa_circ_0128298 and hsa_circ_0091582, were further confirmed by real-time polymerase chain reaction. In addition, the association between the expression level of hsa_circ_0128298 and the clinicopathological features of patients with HCC was further analyzed. The clinical diagnosis value was confirmed by receiver operating characteristic (ROC) curve analysis. Independent prognostic factors of patient outcome were identified using the Cox regression model. The survival data were analyzed by the Kaplan-Meier method, and the differences were evaluated using log-rank tests. Two-sided P -values <0.05 were considered statistically significant. The expression levels of hsa_circ_0128298 in HCC were significantly higher than those of paratumorous tissues ( P <0.001). Additionally, hsa_circ_0128298 was a diagnostic factor, with the area under the ROC curve of 0.668 (95% CI =0.503-0.794, P <0.001). The sensitivity and specificity values were 0.716 and 0.815, respectively. The AFP and hsa_circ_0128298 expression levels were independent prognostic factors. The overall survival of patients with low hsa_circ_0128298 expression was significantly higher than that of patients with high hsa_circ_0128298 expression. hsa_circ_0128298 may promote proliferation and metastasis and potentially represents a novel diagnostic and prognostic biomarker for HCC patients. However, studies with larger sample size are needed to confirm our conclusion.

Circular RNA circ-CBFB promotes proliferation and inhibits apoptosis in chronic lymphocytic leukemia through regulating miR-607/FZD3/Wnt/β-catenin pathway.

PubMed

Xia, Liang; Wu, Linlin; Bao, Jing; Li, Qingsheng; Chen, Xiaowen; Xia, Hailong; Xia, Ruixiang

2018-06-15

Circular RNA (circRNA) belongs to the non-coding RNA family and is involved in various human cancers, such as lung cancer and colorectal cancer. Nevertheless, whether circRNA expression is related to chronic lymphocytic leukemia (CLL) progression remains largely unclear. In our study, we investigated the role of circ-CBFB in CLL. We found that circ-CBFB was markedly overexpressed in CLL cells compared to normal controls. Furthermore, we found that circ-CBFB could serve as a diagnostic and prognostic biomarker for CLL patients. We also explored the physiological function of circ-CBFB. We found that circ-CBFB knockdown significantly suppressed CLL cell proliferation, arrested cell cycle progression, and induced cellular apoptosis. In terms of its mechanism, we identified circ-CBFB as a sponge of miR-607, which targeted FZD3. By inhibiting miR-607 availability, circ-CBFB promoted FZD3 expression, leading to the activation of the Wnt/β-catenin pathway and consequent CLL progression. Taken together, our findings revealed that the circ-CBFB/miR-607/FZD3/Wnt/β-catenin regulatory signaling cascade contributes to CLL progression. Copyright © 2018 Elsevier Inc. All rights reserved.

Circular RNA hsa_circ_0008039 promotes breast cancer cell proliferation and migration by regulating miR-432-5p/E2F3 axis.

PubMed

Liu, Yanhua; Lu, Cuntao; Zhou, Yizhou; Zhang, Zhihong; Sun, Li

2018-07-20

As the development of sequencing technology, more and more circular RNAs (circRNAs) are identified in human cancer tissues. Increasing evidences imply circRNAs are important regulators in tumor progression. Nevertheless, how circRNAs participate in breast cancer development and progression is not well understood. In the present study, we identified a novel circRNA hsa_circ_0008039 with upregulated expression level in breast cancer tissues. By functional experiments, we found that hsa_circ_0008039 depletion significantly suppressed the proliferation, arrested cell-cycle progression and reduced migration in breast cancer. Mechanistic investigations suggested that hsa_circ_0008039 served as a competing endogenous RNA (ceRNA) of miR-432-5p. Subsequently, E2F3 was identified as the functional target of miR-432-5p and overexpression of hsa_circ_0008039 elevated E2F3 expression in breast cancer. On the whole, our study indicated that hsa_circ_0008039 exerted oncogenic roles in breast cancer and suggested the hsa_circ_0008039/miR-432-5p/E2F3 axis might be a potential therapeutic target. Copyright © 2018 Elsevier Inc. All rights reserved.

CircRNA accumulation in the aging mouse brain

PubMed Central

Gruner, Hannah; Cortés-López, Mariela; Cooper, Daphne A.; Bauer, Matthew; Miura, Pedro

2016-01-01

Circular RNAs (circRNAs) are a newly appreciated class of RNAs expressed across diverse phyla. These enigmatic transcripts are most commonly generated by back-splicing events from exons of protein-coding genes. This results in highly stable RNAs due to the lack of free 5′ and 3′ ends. CircRNAs are enriched in neural tissues, suggesting that they might have neural functions. Here, we sought to determine whether circRNA accumulation occurs during aging in mice. Total RNA-seq profiling of young (1 month old) and aged (22 month old) cortex, hippocampus and heart samples was performed. This led to the confident detection of 6,791 distinct circRNAs across these samples, including 675 novel circRNAs. Analysis uncovered a strong bias for circRNA upregulation during aging in neural tissues. These age-accumulation trends were verified for individual circRNAs by RT-qPCR and Northern analysis. In contrast, comparison of aged versus young hearts failed to reveal a global trend for circRNA upregulation. Age-accumulation of circRNAs in brain tissues was found to be largely independent from linear RNA expression of host genes. These findings suggest that circRNAs might play biological roles relevant to the aging nervous system. PMID:27958329

CircDOCK1 suppresses cell apoptosis via inhibition of miR-196a-5p by targeting BIRC3 in OSCC

PubMed Central

Wang, Liping; Wei, Yongxiang; Yan, Yongyong; Wang, Haiyan; Yang, Jiantin; Zheng, Zhichao; Zha, Jun; Bo, Peng; Tang, Yinghua; Guo, Xueqi; Chen, Weihong; Zhu, Xinxin; Ge, Linhu

2018-01-01

Oral squamous cell carcinoma (OSCC) is the most frequent oral cancer in the world, accounting for more than 90% of all oral cancer diagnosis. Circular RNAs (circRNAs) are large types of non-coding RNAs, demonstrating a great capacity of regulating the expression of genes. However, most of the functions of circRNAs are still unknown. Recent research revealed that circRNAs could serve as a miRNA-sponge, consequently regulating the expression of target genes indirectly, including oncogenes. In this study, we built an apoptotic model with TNF-α, and then we confirmed a circRNA associated with the apoptosis of OSCC cells, circDOCK1 by comparing the expression profile of circRNAs in an apoptotic model with that in untreated OSCC cells. We ascertained the presence of circDOCK1 with qRT-PCR and circRNA sequencing. The knockdown of the expression of circDOCK1 led to the increase of apoptosis. Utilizing multiple bioinformatics methods, we predicted the interactions among circRNAs, miRNAs and genes, and built the circDOCK1/miR-196a-5p/BIRC3 axis. Both the silencing of circDOCK1 with small interfering RNA and the upregulation of the expression of miR-196a-5p with mimics led OSCC cells to increase apoptosis and decrease BIRC3 formation. We further confirmed this outcome by comparing the expression of circDOCK1, miR-196a-5p and BIRC3 in oral squamous carcinoma tissue with those in para-carcinoma tissue, and examining the expression profile of circRNAs in oral squamous carcinoma tissue and para-carcinoma tissue with microarray. Our results demonstrated that circDOCK1 regulated BIRC3 expression by functioning as a competing endogenous RNA (ceRNA) and participated in the process of OSCC apoptosis. Thus, we propose that circDOCK1 could represent a novel potential biomarker and therapeutic target of OSCC. PMID:29286141

Circular RNA 0068669 as a new biomarker for hepatocellular carcinoma metastasis.

PubMed

Yao, Ting; Chen, Qingqing; Shao, Zhouwei; Song, Zhihua; Fu, Liyun; Xiao, Bingxiu

2018-05-21

Circular RNAs (circRNAs) play important roles in disease occurrence. However, the roles of circRNAs in the diagnosis of hepatocellular carcinoma (HCC) are largely unknown. The aim of this study is to investigate the clinical diagnostic values of hsa_circ_0068669 (Alias: hsa_circ_103561), one of the representative HCC-associated circRNAs. Hsa_circ_0068669 expression levels in HCC tissues, HCC cell lines, and chronic hepatitis tissues were detected by real-time quantitative reverse transcription-polymerase chain reaction. Its expression levels between HCC tissues and adjacent non-tumorous tissues were analyzed using paired t test. Independent t test and one-way analysis of variance (ANOVA) were performed to analyze the relationships between hsa_circ_0068669 expression levels and clinicopathological factors of patients with HCC. A receiver operating characteristic (ROC) curve was established to estimate the value of hsa_circ_0068669 as a biomarker in HCC. Hsa_circ_0068669 expression was significantly downregulated in HCC tissues and HCC cell lines compared with paired non-tumorous tissues and normal hepatic cell line, respectively. Moreover, hsa_circ_0068669 expression in HCC tissues was decreased comparing with chronic hepatitis tissues. Furthermore, hsa_circ_0068669 expression was correlated with microvascular invasion and TNM stages. Our findings indicate that hsa_circ_0068669 might be served as a novel potential biomarker for HCC metastasis. © 2018 Wiley Periodicals, Inc.

A novel plasma circular RNA circFARSA is a potential biomarker for non-small cell lung cancer.

PubMed

Hang, Dong; Zhou, Jing; Qin, Na; Zhou, Wen; Ma, Hongxia; Jin, Guangfu; Hu, Zhibin; Dai, Juncheng; Shen, Hongbing

2018-06-01

Emerging evidence indicates that circular RNAs (circRNAs) are implicated in cancer development. This study aimed to evaluate whether circulating circRNAs may serve as novel biomarkers for non-small cell lung cancer (NSCLC). We used RNA sequencing (RNA-seq) and quantitative real-time PCR to explore cancer-related circRNAs. Bioinformatics and functional analyses were performed to reveal biological effects of circRNAs on lung cancer cells. A total of 5471 distinct circRNAs were identified by total RNA-seq, in which 185 were differentially expressed between cancerous and adjacent normal tissues. A circRNA derived from exon 5-7 of the FARSA gene, termed circFARSA, was observed to increase in cancerous tissues (P = 0.016), and was more abundant in patients' plasma than controls (P < 0.001). Overexpression of circFARSA in A549 cell line significantly promoted cell migration and invasion. In silico analysis suggested that circFARSA might sponge miR-330-5p and miR-326, thereby relieving their inhibitory effects on oncogene fatty acid synthase. Summarily, this study revealed circRNA profile of NSCLC for the first time and provided the evidence of plasma circFARSA as a potential noninvasive biomarker for this malignancy. © 2018 The Authors. Cancer Medicine published by John Wiley & Sons Ltd.

CircRNAs in the tree shrew (Tupaia belangeri) brain during postnatal development and aging.

PubMed

Lu, CaiXia; Sun, XiaoMei; Li, Na; Wang, WenGuang; Kuang, DeXuan; Tong, PinFen; Han, YuanYuan; Dai, JieJie

2018-04-30

Circular RNAs (circRNAs) are a novel type of non-coding RNA expressed across different species and tissues. At present, little is known about the expression and function of circRNAs in the tree shrew brain. In this study, we used RNA-seq to identify 35,007 circRNAs in hippocampus and cerebellum samples from infant (aged 47-52 days), young (aged 15-18 months), and old (aged 78-86 months) tree shrews. We observed no significant changes in the total circRNA expression profiles in different brain regions over time. However, circRNA tended to be downregulated in the cerebellum over time. Real-time RT-PCR analysis verified the presence of circRNAs. KEGG analysis indicated the occurrence of ubiquitin-mediated proteolysis, the MAPK signaling pathway, phosphatidylinositol signaling system, long-term depression, the rap1 signaling pathway, and long-term potentiation in both brain regions. We also observed that 29,087 (83.1%) tree shrew circRNAs shared homology with human circRNAs. The competing endogenous RNA networks suggested novel_circRNA_007362 potential functions as a 24-miRNAs sponge to regulate UBE4B expression. Thus, we obtained comprehensive circRNA expression profiles in the tree shrew brain during postnatal development and aging, which might help to elucidate the functions of circRNAs during brain aging and in age-related diseases.

Circular RNA circNASP modulates the malignant behaviors in osteosarcoma via miR-1253/FOXF1 pathway.

PubMed

Huang, Lipeng; Chen, Mangmang; Pan, Jun; Yu, Weiyang

2018-06-02

Increasing evidences demonstrate that circular RNAs (circRNAs) serve as essential regulators in various human diseases, including cancer. However, the study on circRNA function in osteosarcoma (OS) is just emerging. In the present study, we screened out a novel circRNA termed circNASP which was significantly upregulated in OS tissues compared to adjacent normal tissues. We found that circNASP knockdown dramatically inhibited the proliferation, cell cycle progression and invasion of OS cells. Moreover, we showed that circNASP expression was positively correlated with tumor size and metastasis in OS patients. In terms of mechanism, we found that circNASP acts as a sponge of miR-1253 targeting FOXF1 in OS cells. By inhibiting miR-1253 availability, circNASP promoted FOXF1 expression. Rescue assays indicated that inhibition of miR-1253 could significantly reverse the effects of circNASP knockdown on OS cell proliferation and invasion while restoration of FOXF1 rescued the proliferation and invasion of OS cells transfected with miR-1253 mimics. Taken together, our findings demonstrated that circNASP contributes to malignant behaviors of OS cells by miR-1253/FOXF1 pathway, which suggested circNASP/miR-1253/FOXF1axis might be a potential therapeutic target. Copyright © 2018 Elsevier Inc. All rights reserved.

Circular RNA profiling reveals an abundant circHIPK3 that regulates cell growth by sponging multiple miRNAs.

PubMed

Zheng, Qiupeng; Bao, Chunyang; Guo, Weijie; Li, Shuyi; Chen, Jie; Chen, Bing; Luo, Yanting; Lyu, Dongbin; Li, Yan; Shi, Guohai; Liang, Linhui; Gu, Jianren; He, Xianghuo; Huang, Shenglin

2016-04-06

Circular RNAs (circRNAs) represent a class of widespread and diverse endogenous RNAs that may regulate gene expression in eukaryotes. However, the regulation and function of human circRNAs remain largely unknown. Here we generate ribosomal-depleted RNA sequencing data from six normal tissues and seven cancers, and detect at least 27,000 circRNA candidates. Many of these circRNAs are differently expressed between the normal and cancerous tissues. We further characterize one abundant circRNA derived from Exon2 of the HIPK3 gene, termed circHIPK3. The silencing of circHIPK3 but not HIPK3 mRNA significantly inhibits human cell growth. Via a luciferase screening assay, circHIPK3 is observed to sponge to 9 miRNAs with 18 potential binding sites. Specifically, we show that circHIPK3 directly binds to miR-124 and inhibits miR-124 activity. Our results provide evidence that circular RNA produced from precursor mRNA may have a regulatory role in human cells.

Sensing Self and Foreign Circular RNAs by Intron Identity.

PubMed

Chen, Y Grace; Kim, Myoungjoo V; Chen, Xingqi; Batista, Pedro J; Aoyama, Saeko; Wilusz, Jeremy E; Iwasaki, Akiko; Chang, Howard Y

2017-07-20

Circular RNAs (circRNAs) are single-stranded RNAs that are joined head to tail with largely unknown functions. Here we show that transfection of purified in vitro generated circRNA into mammalian cells led to potent induction of innate immunity genes and confers protection against viral infection. The nucleic acid sensor RIG-I is necessary to sense foreign circRNA, and RIG-I and foreign circRNA co-aggregate in cytoplasmic foci. CircRNA activation of innate immunity is independent of a 5' triphosphate, double-stranded RNA structure, or the primary sequence of the foreign circRNA. Instead, self-nonself discrimination depends on the intron that programs the circRNA. Use of a human intron to express a foreign circRNA sequence abrogates immune activation, and mature human circRNA is associated with diverse RNA binding proteins reflecting its endogenous splicing and biogenesis. These results reveal innate immune sensing of circRNA and highlight introns-the predominant output of mammalian transcription-as arbiters of self-nonself identity. Copyright © 2017 Elsevier Inc. All rights reserved.

Non-coding effects of circular RNA CCDC66 promote colon cancer growth and metastasis

PubMed Central

Hsiao, Kuei-Yang; Lin, Ya-Chi; Gupta, Sachin Kumar; Chang, Ning; Yen, Laising; Sun, H. Sunny; Tsai, Shaw-Jenq

2018-01-01

Circular RNA (circRNA) is a class of non-coding RNA whose functions remain mostly unknown. Recent studies indicate circRNA may be involved in disease pathogenesis, but direct evidence is scarce. Here we characterize the functional role of a novel circRNA, circCCDC66, in colorectal cancer (CRC). RNA-Seq data from matched normal and tumor colon tissue samples identified numerous circRNAs specifically elevated in cancer cells, several of which were verified by quantitative RT-PCR. CircCCDC66 expression was elevated in polyps and colon cancer and was associated with poor prognosis. Gain-of-function and loss-of-function studies in CRC cell-lines demonstrated that circCCDC66 controlled multiple pathological processes, including cell proliferation, migration, invasion, and anchorage-independent growth. In-depth characterization revealed that circCCDC66 exerts its function via regulation of a subset of oncogenes, and knockdown of circCCDC66 inhibited tumor growth and cancer invasion in xenograft and orthotopic mouse models, respectively. Taken together, these findings highlight a novel oncogenic function of circRNA in cancer progression and metastasis. PMID:28249903

Circular RNA hsa_circ_0016788 regulates hepatocellular carcinoma tumorigenesis through miR-486/CDK4 pathway.

PubMed

Guan, Zheng; Tan, Jing; Gao, Wei; Li, Xin; Yang, Yuandong; Li, Xiaogang; Li, Yingchao; Wang, Qiang

2018-06-19

Recent studies have revealed that circular RNAs (circRNAs) play important roles in the tumorigenesis of human cancer, including hepatocellular carcinoma (HCC). In present study, we screen the circular RNA expression profiles in HCC tissue and investigate the molecular roles on HCC tumorigenesis. Human circRNA microarray analysis showed there were total 1,245 differently expressed circular RNAs, including 756 up-regulated circRNAs and 489 down-regulated circRNAs, in three pairs of HCC tissue and adjacent normal tissue. Hsa_circ_0016788 was identified to be up-regulated in both HCC tissue and cell lines. Loss-of-functional experiments in vivo and vitro revealed that hsa_circ_0016788 silencing inhibited the proliferation, invasion and promoted the apoptosis in vitro, and inhibited the tumor growth in vivo. Bioinformatics tools and luciferase reporter assay validated that miR-486 targeted hsa_circ_0016788 and CDK4 accompanying with negatively correlated expression, suggesting the hsa_circ_0016788/miR-486/CDK4 pathway. Receiver operating characteristic (ROC) curve showed that hsa_circ_0016788 had high diagnostic value (AUC = 0.851). In summary, results reveal the role of hsa_circ_0016788/miR-486/CDK4 in HCC tumorigenesis, providing a novel therapeutic target for HCC. © 2018 Wiley Periodicals, Inc.

Comprehensive analysis of differentially expressed profiles of Alzheimer’s disease associated circular RNAs in an Alzheimer’s disease mouse model

PubMed Central

Huang, Jin-Lan; Qin, Mei-Chun; Zhou, Yan; Xu, Zhe-Hao; Yang, Si-man; Zhang, Fan; Zhong, Jing; Liang, Ming-Kun; Chen, Ben; Zhang, Wen-Yan

2018-01-01

Circular RNAs (circRNAs), a novel kind of non-coding RNA, have received increasing attention for their involvement in pathogenesis of Alzheimer’s disease (AD); however, few studies have reported in the characterization and function of AD associated circRNAs. Here the expression profiles of circRNAs in 5- and 10-month-old SAMP8 mice were identified using circRNA microarray and found that 85 dysregulated circRNAs were observed in 10-month-old SAMP8 versus control mice and 231 circRNAs exhibited differential expression in 10-month-old SAMP8 versus 5-month-old SAMP8. One most significantly dysregulated circRNA, mmu_circRNA_017963, was select for Gene Oncology (GO) and pathway analysis. The results showed that mmu_circRNA_017963 was strongly related with autophagosome assembly, exocytosis, apoptotic process, transport and RNA splicing and highly associated with synaptic vesicle cycle, spliceosome, glycosaminoglycan and SNARE interactions in vesicular transport pathways. Collectively, this study was the first to describe circRNAs expression in different ages of SAMP8 and will contribute to the understanding of the regulatory roles of circRNAs in AD pathogenesis and provide a valuable resource for the diagnosis and therapy of AD. PMID:29448241

Initial Checkout Results of the Compact Infrared Camera (circ) for Earth Observation

NASA Astrophysics Data System (ADS)

Kato, E.; Katayama, H.; Sakai, M.; Nakajima, Y.; Kimura, T.; Nakau, K.; Tonooka, H.

2015-04-01

Compact Infrared Camera (CIRC) is a technology-demonstration instrument equipped with an uncooled infrared array detector (microbolometer) for space application. CIRC is the first microbolometer sensor without a calibration function in orbit, like a shutter system or an onboard blackbody. The main objective of the CIRC is to detect wildfires, which are major and chronic disasters affecting various countries of Southeast Asia, particularly considering the effects of global warming and climate change. The CIRC achieves a small size (approximately 200 mm), light mass (approximately 3 kg), and low electrical power consumption (<20 W) by employing athermal optics and a shutterless system. The CIRC can be consequently mounted on multiple satellites to enable highfrequency observation. Installation of CIRCs on the ALOS-2 and on the JEM/CALET is expected to increase observation frequency. We present the initial check-out results of the CIRC onboard ALOS-2. Since the initial check-out phase (July 4-14, 2014), the CIRC has acquired the images of Earth. CIRC was demonstrated to function according to its intended design. After the early calibration validation phase, which confirmed the temperature accuracy of observed data, CIRC data has been available to the public January 2015 onward. We also introduce a few observational results about wildfire, volcanoes, and heat-island.

Circular RNA circMYO9B facilitates breast cancer cell proliferation and invasiveness via upregulating FOXP4 expression by sponging miR-4316.

PubMed

Wang, Nan; Gu, Yuanting; Li, Lin; Wang, Fang; Lv, Pengwei; Xiong, Youyi; Qiu, Xinguang

2018-04-24

Recently, circular RNAs (circRNAs) have been demonstrated as essential regulators in human cancers. However, the function and mechanism of circRNAs in breast cancer (BC) remain largely unknown and require to be investigated. In the present study, we found that circMYO9B was highly expressed in BC tissues by bioinformatics analysis. And we showed that circMYO9B expression was positively correlated with patients' prognosis. Moreover, we found that circMYO9B knockdown significantly suppressed the proliferation, migration and invasion of BC cells in vitro. In vivo assays also indicated that circMYO9B silence delayed tumor growth. In mechanism, we found that circMYO9B promoted the expression of FOXP4 by sponging miR-4316 in BC cells. We showed that the expression of miR-4316 was inversely associated with that of circMYO9B or FOXP4 in BC tissues. Finally, we found that restoration of FOXP4 expression significantly reversed the effects of circMYO9B knockdown on BC cell proliferation, migration and invasion. In conclusion, our findings demonstrated a key role of circMYO9B/miR-4316/FOXP4 axis in regulating BC progression. Copyright © 2018. Published by Elsevier Inc.

RNA-Seq profiling of circular RNAs in human laryngeal squamous cell carcinomas.

PubMed

Lu, Cheng; Shi, Xi; Wang, Amanda Y; Tao, Yuan; Wang, Zhenxiao; Huang, Chaoping; Qiao, Yuehua; Hu, Hongyi; Liu, Liangfa

2018-05-01

Abnormal expression of non-coding circular RNAs (circRNAs) have been reported in many types of tumors. circRNA have been suggested to be an ideal candidate biomarker for diagnostic and therapeutic implications in cancers. The aim of this study was to assess the circRNA expression profile of laryngeal squamous cell carcinomas (LSCC). The biopsy samples from patients with LSCC were obtained intra-operatively. The circRNA expression was performed using secondary sequencing. Among 10 patients with LSCC, 2 were well differentiated, 3 were moderately differentiated and 5 were adjunctive samples with normal and LSCC tissues. A total of 21,444 distinct circRNA candidates were detected. Among them, we defined the statistical criteria for selecting aberrant-expressed circRNA using a q-value of < 0.001 with a fold change of > 2.0 or < 0.5. A total of 29 circRNA were upregulated and 19 circRNA were downregulated significantly in the LSCC tissues. The intersection of these dysregulated circRNAs of normal-well differentiated set and normal-moderately differentiated set was then assessed to narrow the upregulated and downregulated circRNAs down to 18 and 5 respectively. Furthermore, an association of the circRNA-miRNA-mRNA was investigated, showing that 20 dysregulated circRNA successfully predicted an interaction with several cancer-related miRNAs. Finally, a further KEGG analysis showed that PPAR, Axon guidance, Wnt and Cell cycle signaling pathway were key putative pathways in the process of LSCC. hsa_circ:chr20:31876585-31,897,648 was found to be able to differentiate most of LSCC from the matching normal tissues. This observational study demonstrated dysregulation of circRNA in LSCC, which may have an impact on development of potential biomarkers in this disease. Validation of down-regulation of hsa_circ:chr20:31876585-31,897,648 in LSCC compared to each adjunctive tissue by Q-RT-PCR, indicating that hsa_circ:chr20:31876585-31,897,648 may be a novel promising tumor suppresser in LSCC.

Circular RNA PVT1 expression and its roles in acute lymphoblastic leukemia.

PubMed

Hu, Jiaojiao; Han, Qi; Gu, Yan; Ma, Jinlong; McGrath, Mary; Qiao, Fengchang; Chen, Baoan; Song, Chunhua; Ge, Zheng

2018-04-25

The roles of circular RNA PVT1 (circPVT1) are explored in the patients with acute lymphoblastic leukemia (ALL). The circPVT1 level was detected by qRT-PCR and western blot. The apoptotic cells were examined by the annexin V assay in lentiviral shRNA knockdown cells. circPVT1 was highly expressed in ALL compared with normal bone marrow samples. circPVT1 expression was also significantly higher in ALL cell lines. circPVT1 knockdown inhibited cell proliferation and induced cell apoptosis through suppression of its neighbor gene c-Myc, and antiapoptotic Bcl-2 protein expression. circPVT1 is upregulated in ALL. Silencing circPVT1 results in cell growth arrest and apoptosis of the cells. Our results also suggested a therapeutic potential of targeting circPVT1 in ALL.

Circular RNA MYLK as a competing endogenous RNA promotes bladder cancer progression through modulating VEGFA/VEGFR2 signaling pathway.

PubMed

Zhong, Zhenyu; Huang, Mengge; Lv, Mengxin; He, Yunfeng; Duan, Changzhu; Zhang, Luyu; Chen, Junxia

2017-09-10

Accumulating evidences indicate that circular RNAs (circRNAs) play a vital role in modulating gene expression. However, the mechanisms underlying circRNAs remain largely elusive. Here, we screened circRNA and mRNA expression profiles of bladder carcinoma (BC) using microarray analysis. We found that circRNA-MYLK and VEGFA were significantly up-regulated and co-expressed in BC. Importantly, circRNA-MYLK levels were related to the progression of stage and grade of BC. Mechanistically, we demonstrated that circRNA-MYLK could directly bind to miR-29a and relieve suppression for target VEGFA, which activated VEGFA/VEGFR2 signaling pathway. Functionally, we found that ectopically expressing circRNA-MYLK accelerated cell proliferation, migration, tube formation of HUVEC and rearranged cytoskeleton. Moreover, up-regulating circRNA-MYLK promoted epithelial-mesenchymal transition (EMT). Whereas circRNA-MYLK knockdown decreased cell proliferation, motility, and induced apoptosis. Finally, up-regulating circRNA-MYLK promoted the growth, angiogenesis and metastasis of BC xenografts. Taken together, this study demonstrated for the first time that circRNA-MYLK might function as competing endogenous RNA (ceRNA) for miR-29a, which could contribute to EMT and the development of BC through activating VEGFA/VEGFR2 and downstream Ras/ERK signaling pathway. Our data suggest that circRNA-MYLK would be a promising target for BC diagnosis and therapy. Copyright © 2017 Elsevier B.V. All rights reserved.

Circular RNA Profiling and Bioinformatic Modeling Identify Its Regulatory Role in Hepatic Steatosis.

PubMed

Guo, Xing-Ya; He, Chong-Xin; Wang, Yu-Qin; Sun, Chao; Li, Guang-Ming; Su, Qing; Pan, Qin; Fan, Jian-Gao

2017-01-01

Circular RNAs (circRNAs) exhibit a wide range of physiological and pathological activities. To uncover their role in hepatic steatosis, we investigated the expression profile of circRNAs in HepG2-based hepatic steatosis induced by high-fat stimulation. Differentially expressed circRNAs were subjected to validation using QPCR and functional analyses using principal component analysis, hierarchical clustering, target prediction, gene ontology (GO), and pathway annotation, respectively. Bioinformatic integration established the circRNA-miRNA-mRNA regulatory network so as to identify the mechanisms underlying circRNAs' metabolic effect. Here we reported that hepatic steatosis was associated with a total of 357 circRNAs. Enrichment of transcription-related GOs, especially GO: 0006355, GO: 004589, GO: 0045944, GO: 0045892, and GO: 0000122, demonstrated their specific actions in transcriptional regulation. Lipin 1 (LPIN1) was recognized to mediate the transcriptional regulatory effect of circRNAs on metabolic pathways. circRNA-miRNA-mRNA network further identified the signaling cascade of circRNA_021412/miR-1972/LPIN1, which was characterized by decreased level of circRNA_021412 and miR-1972-based inhibition of LPIN1. LPIN1-induced downregulation of long chain acyl-CoA synthetases (ACSLs) expression finally resulted in the hepatosteatosis. These findings identify circRNAs to be important regulators of hepatic steatosis. Transcription-dependent modulation of metabolic pathways may underlie their effects, partially by the circRNA_021412/miR-1972/LPIN1 signaling.

Circular RNA hsa_circ_0000673 promotes hepatocellular carcinoma malignance by decreasing miR-767-3p targeting SET.

PubMed

Jiang, Weidong; Wen, Dacheng; Gong, Lulu; Wang, Yu; Liu, Zefeng; Yin, Fangying

2018-06-02

The importance of circular RNAs (circRNAs) in human cancers has gradually been acknowledged. In hepatocellular carcinoma (HCC), several circRNAs have been reported to regulate tumor growth and metastasis. However, the role of hsa_circ_0000673 in HCC remains largely unknown. In this study, we found that hsa_circ_0000673 was significantly upregulated in HCC tissues compared to adjacent non-tumor tissues. Moreover, we found that hsa_circ_0000673 knockdown markedly inhibited the proliferation and invasion of HCC cells in vitro. Besides, hsa_circ_0000673 silence led to delayed tumor growth in vivo. In terms of mechanism, we showed that hsa_circ_0000673 directly associated with miR-767-3p in HCC cells. Via inhibiting miR-767-3p, hsa_circ_0000673 promoted HCC cell proliferation and invasion. Furthermore, we demonstrated that SET was a downstream effector of hsa_circ_0000673/miR-767-3p signaling. We showed that miR-767-3p could significantly promote SET expression by sponging miR-767-3p in HCC cells. Finally, rescue assays indicated that SET expression was essential for the effects of hsa_circ_0000673/miR-767-3p signaling on HCC cell proliferation and invasion. Taken together, our findings demonstrated that hsa_circ_0000673 promoted HCC malignant behaviors via regulating miR-767-3p/SET pathway. Copyright © 2018 Elsevier Inc. All rights reserved.

Regulatory Role of Circular RNAs and Neurological Disorders.

PubMed

Floris, Gabriele; Zhang, Longbin; Follesa, Paolo; Sun, Tao

2017-09-01

Circular RNAs (circRNAs) are a class of long noncoding RNAs that are characterized by the presence of covalently linked ends and have been found in all life kingdoms. Exciting studies in regulatory roles of circRNAs are emerging. Here, we summarize classification, characteristics, biogenesis, and regulatory functions of circRNAs. CircRNAs are found to be preferentially expressed along neural genes and in neural tissues. We thus highlight the association of circRNA dysregulation with neurodegenerative diseases such as Alzheimer's disease. Investigation of regulatory role of circRNAs will shed novel light in gene expression mechanisms during development and under disease conditions and may identify circRNAs as new biomarkers for aging and neurodegenerative disorders.

Circular RNA: an emerging key player in RNA world.

PubMed

Meng, Xianwen; Li, Xue; Zhang, Peijing; Wang, Jingjing; Zhou, Yincong; Chen, Ming

2017-07-01

Insights into the circular RNA (circRNA) exploration have revealed that they are abundant in eukaryotic transcriptomes. Diverse genomic regions can generate different types of RNA circles, implying their diversity. Covalently closed loop structures elevate the stability of this new type of noncoding RNA. High-throughput sequencing analyses suggest that circRNAs exhibit tissue- and developmental-specific expression, indicating that they may play crucial roles in multiple cellular processes. Strikingly, several circRNAs could function as microRNA sponges and regulate gene transcription, highlighting a new class of important regulators. Here, we review the recent advances in knowledge of endogenous circRNA biogenesis, properties and functions. We further discuss the current findings about circRNAs in human diseases. In plants, the roles of circRNAs remain a mystery. Online resources and bioinformatics identification of circRNAs are essential for the analysis of circRNA biology, although different strategies yield divergent results. The understanding of circRNA functions remains limited; however, circRNAs are enriching the RNA world, acting as an emerging key player. © The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Noncoding Effects of Circular RNA CCDC66 Promote Colon Cancer Growth and Metastasis.

PubMed

Hsiao, Kuei-Yang; Lin, Ya-Chi; Gupta, Sachin Kumar; Chang, Ning; Yen, Laising; Sun, H Sunny; Tsai, Shaw-Jenq

2017-05-01

Circular RNA (circRNA) is a class of noncoding RNA whose functions remain mostly unknown. Recent studies indicate circRNA may be involved in disease pathogenesis, but direct evidence is scarce. Here, we characterize the functional role of a novel circRNA, circCCDC66, in colorectal cancer. RNA-Seq data from matched normal and tumor colon tissue samples identified numerous circRNAs specifically elevated in cancer cells, several of which were verified by quantitative RT-PCR. CircCCDC66 expression was elevated in polyps and colon cancer and was associated with poor prognosis. Gain-of-function and loss-of-function studies in colorectal cancer cell lines demonstrated that circCCDC66 controlled multiple pathological processes, including cell proliferation, migration, invasion, and anchorage-independent growth. In-depth characterization revealed that circCCDC66 exerts its function via regulation of a subset of oncogenes, and knockdown of circCCDC66 inhibited tumor growth and cancer invasion in xenograft and orthotopic mouse models, respectively. Taken together, these findings highlight a novel oncogenic function of circRNA in cancer progression and metastasis. Cancer Res; 77(9); 2339-50. ©2017 AACR . ©2017 American Association for Cancer Research.

Profiling and bioinformatic analysis of circular RNA expression regulated by c-Myc.

PubMed

Gou, Qiheng; Wu, Ke; Zhou, Jian-Kang; Xie, Yuxin; Liu, Lunxu; Peng, Yong

2017-09-22

The c-Myc transcription factor is involved in cell proliferation, cell cycle and apoptosis by activating or repressing transcription of multiple genes. Circular RNAs (circRNAs) are widely expressed non-coding RNAs participating in the regulation of gene expression. Using a high-throughput microarray assay, we showed that Myc regulates the expression of certain circRNAs. A total of 309 up- and 252 down-regulated circRNAs were identified. Among them, randomly selected 8 circRNAs were confirmed by real-time PCR. Subsequently, Myc-binding sites were found to generally exist in the promoter regions of differentially expressed circRNAs. Based on miRNA sponge mechanism, we constructed circRNAs/miRNAs network regulated by Myc, suggesting that circRNAs may widely regulate protein expression through miRNA sponge mechanism. Lastly, we took advantage of Gene Ontology and KEGG analyses to point out that Myc-regulated circRNAs could impact cell proliferation through affecting Ras signaling pathway and pathways in cancer. Our study for the first time demonstrated that Myc transcription factor regulates the expression of circRNAs, adding a novel component of the Myc tumorigenic program and opening a window to investigate the function of certain circRNAs in tumorigenesis.

Profiling and bioinformatics analyses reveal differential circular RNA expression in radioresistant esophageal cancer cells.

PubMed

Su, Huafang; Lin, Fuqiang; Deng, Xia; Shen, Lanxiao; Fang, Ya; Fei, Zhenghua; Zhao, Lihao; Zhang, Xuebang; Pan, Huanle; Xie, Deyao; Jin, Xiance; Xie, Congying

2016-07-28

Acquired radioresistance during radiotherapy is considered as the most important reason for local tumor recurrence or treatment failure. Circular RNAs (circRNAs) have recently been identified as microRNA sponges and involve in various biological processes. The purpose of this study is to investigate the role of circRNAs in the radioresistance of esophageal cancer. Total RNA was isolated from human parental cell line KYSE-150 and self-established radioresistant esophageal cancer cell line KYSE-150R, and hybridized to Arraystar Human circRNA Array. Quantitative real-time PCR was used to confirm the circRNA expression profiles obtained from the microarray data. Bioinformatic tools including gene ontology (GO) analysis, KEGG pathway analysis and network analysis were done for further assessment. Among the detected candidate 3752 circRNA genes, significant upregulation of 57 circRNAs and downregulation of 17 circRNAs in human radioresistant esophageal cancer cell line KYSE-150R were observed compared with the parental cell line KYSE-150 (fold change ≥2.0 and P < 0.05). There were 9 out of these candidate circRNAs were validated by real-time PCR. GO analysis revealed that numerous target genes, including most microRNAs were involved in the biological processes. There were more than 400 target genes enrichment on Wnt signaling pathway. CircRNA_001059 and circRNA_000167 were the two largest nodes in circRNA/microRNA co-expression network. Our study revealed a comprehensive expression and functional profile of differentially expressed circRNAs in radioresistant esophageal cancer cells, indicating possible involvement of these dysregulated circRNAs in the development of radiation resistance.

Circular RNA hsa_circ_0000745 may serve as a diagnostic marker for gastric cancer.

PubMed

Huang, Mei; He, Yi-Ren; Liang, Li-Chuan; Huang, Qiang; Zhu, Zhi-Qiang

2017-09-14

To determine whether circular RNAs (circRNAs) are involved in pathological processes of gastric cancer (GC). Three circRNAs with differential expression in GC and colorectal cancer were randomly selected for validation by quantitative reverse transcription-polymerase chain reaction (qRT-PCR), using 20 pairs of gastric tissues and normal tissues. Based on the predicted circRNA-miRNA network, we then focused on hsa_circ_0000745, which was found to be down-regulated in 20 GC tissues compared with normal tissues. The hsa_circ_0000745 levels were further analyzed by qRT-PCR in 60 GC tissues and paired adjacent non-tumor tissues, as well as 60 plasma samples from GC patients and 60 plasma samples from healthy controls. The associations between the levels of hsa_circ_0000745 and the clinicopathological features of GC patients were statistically assessed. A receiver operating characteristic (ROC) curve was used to evaluate the diagnostic value of hsa_circ_0000745 in GC. Hsa_circ_0000745 was down-regulated in GC tissues vs non-tumorous tissues ( P < 0.001) and in plasma samples from patients with GC vs healthy controls ( P < 0.001). The expression level of hsa_circ_0000745 in GC tissues correlated with tumor differentiation, while the expression level in plasma correlated with tumor-node-metastasis stage. The area under the ROC curve (AUC) of hsa_circ_0000745 in plasma was 0.683, suggesting good diagnostic value. Plasma hsa_circ_0000745 level combined with carcinoembryogenic antigen (CEA) level increased the AUC to 0.775. Hsa_circ_0000745 plays an important role in GC and its expression level in plasma in combination with CEA level is a promising diagnostic marker for this malignancy.

Circular RNA circITGA7 inhibits colorectal cancer growth and metastasis by modulating the Ras pathway and upregulating transcription of its host gene ITGA7.

PubMed

Li, Xiaomin; Wang, Jianjun; Zhang, Chao; Lin, Chun; Zhang, Jianming; Zhang, Wei; Zhang, Wenjuan; Lu, Yanxia; Zheng, Lin; Li, Xuenong

2018-06-26

Circular RNAs (circRNAs) are significantly dysregulated in various cancer types. However, the roles and mechanisms of circRNAs in cancer remain largely unknown. In this study, we demonstrated that a novel circRNA (circITGA7) and its linear host gene ITGA7 are both significantly downregulated in colorectal cancer (CRC) tissues and cell lines. These decreased expression levels correlated with CRC progression. Functional assays demonstrated that ectopic circITGA7 expression suppressed the growth and metastasis of CRC cell in vitro and in vivo. Knockdown of circITGA7 or ITGA7 promoted the proliferation and migration of CRC cells in vitro and enhanced CRC growth in vivo. Mechanistically, we found that circITGA7 is a negative regulator of the Ras signalling pathway and ITGA7 is associated with cytokine-related signalling pathways through RNA-seq and KEGG enrichment analysis. In addition, circITGA7 binds to miR-370-3p to antagonize its suppression of NF1, which is a well-known negative regulator of the Ras pathway. Finally, circITGA7 upregulates the transcription of ITGA7 by suppressing RREB1 via the Ras pathway. In conclusion, our findings indicate a suppressor role of circITGA7 and ITGA7 in CRC and reveal that circITGA7 inhibits proliferation and metastasis of CRC cells by suppressing the Ras signalling pathway and promoting the transcription of ITGA7, suggesting that circITGA7 is a potential target for CRC treatment. This article is protected by copyright. All rights reserved. This article is protected by copyright. All rights reserved.

Diverse alternative back-splicing and alternative splicing landscape of circular RNAs

PubMed Central

Zhang, Xiao-Ou; Dong, Rui; Zhang, Yang; Zhang, Jia-Lin; Luo, Zheng; Zhang, Jun; Chen, Ling-Ling; Yang, Li

2016-01-01

Circular RNAs (circRNAs) derived from back-spliced exons have been widely identified as being co-expressed with their linear counterparts. A single gene locus can produce multiple circRNAs through alternative back-splice site selection and/or alternative splice site selection; however, a detailed map of alternative back-splicing/splicing in circRNAs is lacking. Here, with the upgraded CIRCexplorer2 pipeline, we systematically annotated different types of alternative back-splicing and alternative splicing events in circRNAs from various cell lines. Compared with their linear cognate RNAs, circRNAs exhibited distinct patterns of alternative back-splicing and alternative splicing. Alternative back-splice site selection was correlated with the competition of putative RNA pairs across introns that bracket alternative back-splice sites. In addition, all four basic types of alternative splicing that have been identified in the (linear) mRNA process were found within circRNAs, and many exons were predominantly spliced in circRNAs. Unexpectedly, thousands of previously unannotated exons were detected in circRNAs from the examined cell lines. Although these novel exons had similar splice site strength, they were much less conserved than known exons in sequences. Finally, both alternative back-splicing and circRNA-predominant alternative splicing were highly diverse among the examined cell lines. All of the identified alternative back-splicing and alternative splicing in circRNAs are available in the CIRCpedia database (http://www.picb.ac.cn/rnomics/circpedia). Collectively, the annotation of alternative back-splicing and alternative splicing in circRNAs provides a valuable resource for depicting the complexity of circRNA biogenesis and for studying the potential functions of circRNAs in different cells. PMID:27365365

Downregulation of circular RNA hsa_circ_0001649 indicates poor prognosis for retinoblastoma and regulates cell proliferation and apoptosis via AKT/mTOR signaling pathway.

PubMed

Xing, Lichen; Zhang, Leiming; Feng, Yali; Cui, Zhe; Ding, Lin

2018-06-01

Retinoblastoma (RB) is the most common intraocular malignancy in infants and children with high mortality rate in developing countries. Emerging evidence demonstrated that abnormally expressed circular RNAs (circRNAs) are involved in tumorigenesis and progression in several malignancies. However, their clinical values, biological functions and mechanisms in RB has not been reported before. Recently, hsa_circ_0001649 was found to play imperative roles in cholangiocarcinoma, gastric cancer, and hepatocellular carcinoma. In the current study, qRT-PCR was performed to detect the expression of hsa_circ_0001649 in RB samples and cells. The correlations between hsa_circ_0001649 expression and clinicopathologic characteristics were further analyzed. In addition, we up-regulated hsa_circ_0001649 in Y79 cells and knocked down hsa_circ_0001649 in WERI-Rb1 cells to explore its effect on cell proliferation and apoptosis. The animal study was performed to confirm the in vitro results. Furthermore, AKT/mTOR signaling pathway was detected to clarify the molecular mechanisms of hsa_circ_0001649 exerts in RB cell growth. The results indicated that hsa_circ_0001649 was decreased in RB tissues and cells, and this downregulation was associated with larger tumor size and advanced intraocular international retinoblastoma classify (IIRC) stage in RB patients. Additionally, hsa_circ_0001649 could act as an independent prognostic predictor for overall survival in patients with RB. Moreover, hsa_circ_0001649 inhibits cell growth and promotes cell apoptosis in RB cells. AKT/mTOR signaling pathway is involved in the cell growth alteration affected by hsa_circ_0001649. Overall, hsa_circ_0001649 might be a potentially useful prognostic biomarker and therapeutic target for RB. Copyright © 2018. Published by Elsevier Masson SAS.

Hsa_circ_0001649: A circular RNA and potential novel biomarker for hepatocellular carcinoma.

PubMed

Qin, Meilin; Liu, Gang; Huo, Xisong; Tao, Xuemei; Sun, Xiaomeng; Ge, Zhouhong; Yang, Juan; Fan, Jia; Liu, Lei; Qin, Wenxin

2016-01-01

It has been shown that circular RNA (circRNA) is associated with human cancers, however, few studies have been reported in hepatocellular carcinoma (HCC). To estimate clinical values of a circular RNA, Hsa_circ_0001649, in HCC. Expression level of hsa_circ_0001649 was detected in HCC and paired adjacent liver tissues by real-time quantitative reverse transcription-polymerase chain reactions (qRT-PCRs). Differences in expression level of hsa_circ_0001649 were analyzed using the paired t-test. Tests were performed between clinical information and hsa_circ_0001649 expression level by analysis of variance (ANOVA) or welch t-test and a receiver operating characteristics (ROC) curve was established to estimate the value of hsa_circ_0001649 expression as a biomarker in HCC. hsa_circ_0001649 expression was significantly downregulated in HCC tissues (p = 0.0014) based on an analysis of 89 paired samples of HCC and adjacent liver tissues and the area under the ROC curve (AUC) was 0.63. Furthermore, hsa_circ_0001649 expression was correlated with tumor size (p = 0.045) and the occurrence of tumor embolus (p = 0.017) in HCC. We first found hsa_circ_0001649 was significantly downregulated in HCC. Our findings indicate hsa_circ_0001649 might serve as a novel potential biomarker for HCC and may function in tumorigenesis and metastasis of HCC.

hsa_circ_0013958: a circular RNA and potential novel biomarker for lung adenocarcinoma.

PubMed

Zhu, Xiaoli; Wang, Xiyong; Wei, Shuzhen; Chen, Yan; Chen, Yang; Fan, Xiaobo; Han, Shuhua; Wu, Guoqiu

2017-07-01

Circular RNAs (circRNAs) are associated with cancer progression and metastasis, although little is known about their role in lung adenocarcinoma (LAC). In the present study, microarrays were first used to screen for tumour-specific circRNA candidates in LAC tissue. Thirty-nine circRNAs were found to be up-regulated and 20 were down-regulated (fold change > 2.0). Among them, hsa_circ_0013958 was further confirmed to be up-regulated in all of the LAC tissues, cells and plasma. In addition, hsa_circ_0013958 levels were associated with TNM stage (P = 0.009) and lymphatic metastasis (P = 0.006). The area under the receiver operating characteristic curve was 0.815 (95% confidence interval = 0.727-0.903; P < 0.001). In addition, to further illustrate the bioactivities of hsa_circ_0013958 in LAC, siRNA-mediated inhibition of hsa_circ_0013958 was performed in vitro. The results showed that hsa_circ_0013958 promoted cell proliferation and invasion and inhibited cell apoptosis in LAC. Moreover, hsa_circ_0013958 was identified as a sponge of miR-134, and thus it up-regulated oncogenic cyclin D1, which plays a pivotal role in the development of non-small cell lung cancer. In conclusion, our results suggested that hsa_circ_0013958 could be used as a potential non-invasive biomarker for the early detection and screening of LAC. © 2017 Federation of European Biochemical Societies.

Circular RNA profile in gliomas revealed by identification tool UROBORUS.

PubMed

Song, Xiaofeng; Zhang, Naibo; Han, Ping; Moon, Byoung-San; Lai, Rose K; Wang, Kai; Lu, Wange

2016-05-19

Recent evidence suggests that many endogenous circular RNAs (circRNAs) may play roles in biological processes. However, the expression patterns and functions of circRNAs in human diseases are not well understood. Computationally identifying circRNAs from total RNA-seq data is a primary step in studying their expression pattern and biological roles. In this work, we have developed a computational pipeline named UROBORUS to detect circRNAs in total RNA-seq data. By applying UROBORUS to RNA-seq data from 46 gliomas and normal brain samples, we detected thousands of circRNAs supported by at least two read counts, followed by successful experimental validation on 24 circRNAs from the randomly selected 27 circRNAs. UROBORUS is an efficient tool that can detect circRNAs with low expression levels in total RNA-seq without RNase R treatment. The circRNAs expression profiling revealed more than 476 circular RNAs differentially expressed in control brain tissues and gliomas. Together with parental gene expression, we found that circRNA and its parental gene have diversified expression patterns in gliomas and control brain tissues. This study establishes an efficient and sensitive approach for predicting circRNAs using total RNA-seq data. The UROBORUS pipeline can be accessed freely for non-commercial purposes at http://uroborus.openbioinformatics.org/. © The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research.

Circular RNA Myosin Light Chain Kinase (MYLK) Promotes Prostate Cancer Progression through Modulating Mir-29a Expression.

PubMed

Dai, Yuanqing; Li, Dongjie; Chen, Xiong; Tan, Xinji; Gu, Jie; Chen, Mingquan; Zhang, Xiaobo

2018-05-25

BACKGROUND In developed countries, prostate cancer (PCa) is a frequently diagnosed cancer with the second highest fatality rate. Circular RNAs (circRNAs) are a class of endogenous non-coding RNAs (ncRNAs) stably expressed in cells and involved in a series of carcinomas. However, few research studies have reported on the role of circRNAs in PCa. MATERIAL AND METHODS We used qRT-PCR to detect the expression of circMYLK (circRNA ID: hsa_circ_0141940) and miR-29a in PCa tissues and cell lines. MTT, colony formation, and TUNEL assays were performed to analysis the cell viability of PCa cells. Transwell and wound scratch assays were performed to investigate the cell invasion and migration of PCa cells. RESULTS In the present study, we confirmed that circMYLK expression level was significantly higher in PCa samples and PCa cells than in normal tissues and normal prostatic cells. The upregulated circRNA-MYLK promoted PCa cells proliferation, invasion, and migration; however, si-circRNA-MYLK significantly accelerated the PCa cell apoptosis. We also observed that the aforementioned function of circRNA-MYLK on PCa cells was affected through targeting miR-29a. CONCLUSIONS We confirmed circRNA-MYLK was an oncogene in PCa and revealed a novel mechanism underlying circRNA-MYLK in PC progression.

Vertical-Cavity Surface-Emitting Lasers: Design, Fabrication and Characterization

NASA Astrophysics Data System (ADS)

Geels, Randall Scott

The theory, design, fabrication, and testing of vertical-cavity surface-emitting lasers (VCSELs) is explored in depth. The design of the distributed Bragg reflector (DBR) mirrors is thoroughly treated and both analytic and numerical approaches for computing the reflectivity are covered. The electrical properties of the DBR mirrors are also considered and graded interfaces are found to be critical in reducing the series voltage drop in the mirrors. Thickness variations due to growth rate uncertainties are considered and the permissible thickness inaccuracies are discussed. Layer thickness variations of several percent can be tolerated without large changes in the threshold current. The growth of VCSELs by molecular beam epitaxy (MBE) is described in detail as is the device processing technology for broad area as well as small area devices. Results from numerous devices are reported. Broad area in-plane lasers were used to characterize the material and determine the internal parameters. Broad area VCSELs were fabricated to determine the characteristics of the VCSEL cavity. Small area VCSELs were fabricated and extensively tested. Measured and derived parameters from small area devices include: threshold current (~0.7 mA), peak output power (>3 mW), maximum operation temperature (>110^ circC), output power at 100^ circC (~0.4 mW), and linewidth (85 MHz). The near field, far field, and polarization characteristics were also measured.

Circular RNAs and hereditary bone diseases.

PubMed

Zhai, Naixiang; Lu, Yanqin; Wang, Yanzhou; Ren, Xiuzhi; Han, Jinxiang

2018-02-01

Circular RNA (circRNA) is a non-linear form of RNA derived from exonic, intronic, and exon-intron gene regions. circRNAs are characterized by covalent closed loops, highly stable nuclease resistance, and specific expression in species and developmental stages. CircRNA molecules have been identified as playing roles in the regulation of cell transcription, transcriptional expression after translation, interactions with microRNAs, and protein coding. A high stability and tissue- and disease-specific expression allow circRNAs to serve as potential biomarkers both for diseases and prognosis. CircRNAs function in bone remodeling by directly participating in bone-related signaling pathways and by forming the circRNA-miRNA-mRNA axis. Studies have seldom reported on the low incidence of circRNAs in genetic bone disorders. The current study reviews the characteristics of circRNAs and recent research on their role in rare hereditary bone diseases.

Circular RNA of cattle casein genes are highly expressed in bovine mammary gland.

PubMed

Zhang, ChunLei; Wu, Hui; Wang, YanHong; Zhu, ShiQi; Liu, JunQiang; Fang, XingTang; Chen, Hong

2016-06-01

Recent studies have revealed that, in addition to hormones and other protein factors, noncoding RNA molecules play an important regulatory role in milk protein synthesis. Circular RNAs (circRNAs) are universally expressed noncoding RNA species that have been proposed recently to regulate the expression of their parental genes. In the present study, the deep RNA-sequencing technique known as RNA-seq was used to compare expression profiles of circRNAs from 2 pooled RNA samples from cow mammary gland on d 90 and 250 postpartum and to identify the key circRNAs involved in lactation. A total of 4,804 and 4,048 circRNAs were identified in the cow mammary gland on d 90 and 250 postpartum, respectively, of which only 2,231 circRNAs were co-expressed at both lactation stages, suggesting high stage specificity in the circRNAs. The enrichment of some Gene Ontology terms for the circRNA parental genes differed between lactation stages. Among the top 10 enriched Gene Ontology terms, vesicle, endoplasmic reticulum, and mitochondrial lumen were more common on lactation d 90. All 4 casein-coding genes (CSN1S1, CSN1S2, CSN2, and CSN3) produced circRNAs in the cattle mammary gland. In total, 80 circRNAs were identified from these 4 genes; circRNAs from CSN1S1 had very high abundance, and 3 of them accounted for 36% of all the circRNAs expressed in the mammary gland on lactation d 90. Three circRNAs from CSN1S1, 1 circRNA from CSN1S2, and 1 circRNA from CSN2 were all more highly expressed on lactation d 90 than on lactation d 250, as confirmed by quantitative PCR. These circRNAs had several target sites for the microRNA miR-2284 family and were predicted to target CSN1S1 and CSN2 mRNA, suggesting their potential involvement in regulating expression of the casein genes. Copyright © 2016 American Dairy Science Association. Published by Elsevier Inc. All rights reserved.

Microarray expression profile of circular RNAs in chronic thromboembolic pulmonary hypertension

PubMed Central

Miao, Ran; Wang, Ying; Wan, Jun; Leng, Dong; Gong, Juanni; Li, Jifeng; Liang, Yan; Zhai, Zhenguo; Yang, Yuanhua

2017-01-01

Abstract Background: Chronic thromboembolic pulmonary hypertension (CTEPH) is a rare but debilitating and life-threatening complication of acute pulmonary embolism. Circular RNAs (circRNAs), presenting as covalently closed continuous loops, are RNA molecules with covalently joined 3′- and 5′-ends formed by back-splicing events. circRNAs may be significant biological molecules to understand disease mechanisms and to identify biomarkers for disease diagnosis and therapy. The aim of this study was to investigate the potential roles of circRNAs in CTEPH. Methods: Ten human blood samples (5 each from CTEPH and control groups) were included in the Agilent circRNA chip. The differentially expressed circRNAs were evaluated using t test, with significance set at a P value of < .05. A functional enrichment analysis for differentially expressed circRNAs was performed using DAVID online tools, and a Kyoto Encyclopedia of Genes and Genomes pathway enrichment analysis for target genes of miRNAs was performed using the R package clusterProfiler. Furthermore, miRNAs that interacted with differentially expressed circRNAs were predicted using the miRanda package. mRNAs that had clear biological functions and were regulated by miRNAs were predicted using miRWalk2.0 and then combined into a circRNA–miRNA–mRNA network. Results: In total, 351 differentially expressed circRNAs (122 upregulated and 229 downregulated) between CTEPH and control groups were obtained; among these circRNAs, hsa_circ_0002062 and hsa_circ_0022342 might be important because they can regulate 761 (e.g., hsa-miR-942–5p) and 453 (e.g., hsa-miR-940) miRNAs, respectively. Target genes (e.g., cyclin-dependent kinase 6) of hsa-miR-942–5p were mainly enriched in cancer-related pathways, whereas target genes (e.g., CRK-Like Proto-Oncogene, Adaptor Protein) of hsa-miR-940 were enriched in the ErbB signaling pathway. Therefore, these pathways are potentially important in CTEPH. Conclusions: Our findings suggested that hsa_circ_0002062 and hsa_circ_0022342 may be key circRNAs for CTEPH development and that their targeted regulation may be an effective approach for treating CTEPH. PMID:28682884

RBM20 Regulates Circular RNA Production From the Titin Gene.

PubMed

Khan, Mohsin A F; Reckman, Yolan J; Aufiero, Simona; van den Hoogenhof, Maarten M G; van der Made, Ingeborg; Beqqali, Abdelaziz; Koolbergen, Dave R; Rasmussen, Torsten B; van der Velden, Jolanda; Creemers, Esther E; Pinto, Yigal M

2016-10-14

RNA-binding motif protein 20 (RBM20) is essential for normal splicing of many cardiac genes, and loss of RBM20 causes dilated cardiomyopathy. Given its role in splicing, we hypothesized an important role for RBM20 in forming circular RNAs (circRNAs), a novel class of noncoding RNA molecules. To establish the role of RBM20 in the formation of circRNAs in the heart. Here, we performed circRNA profiling on ribosomal depleted RNA from human hearts and identified the expression of thousands of circRNAs, with some of them regulated in disease. Interestingly, we identified 80 circRNAs to be expressed from the titin gene, a gene that is known to undergo highly complex alternative splicing. We show that some of these circRNAs are dynamically regulated in dilated cardiomyopathy but not in hypertrophic cardiomyopathy. We generated RBM20-null mice and show that they completely lack these titin circRNAs. In addition, in a cardiac sample from an RBM20 mutation carrier, titin circRNA production was severely altered. Interestingly, the loss of RBM20 caused only a specific subset of titin circRNAs to be lost. These circRNAs originated from the RBM20-regulated I-band region of the titin transcript. We show that RBM20 is crucial for the formation of a subset of circRNAs that originate from the I-band of the titin gene. We propose that RBM20, by excluding specific exons from the pre-mRNA, provides the substrate to form this class of RBM20-dependent circRNAs. © 2016 American Heart Association, Inc.

Circ-UBR5: An exonic circular RNA and novel small nuclear RNA involved in RNA splicing.

PubMed

Qin, Meilin; Wei, Gang; Sun, Xiaomeng

2018-06-24

Circular RNAs (circRNAs) are class of non-coding RNAs formed by back-splicing events as loops, and could be found in all types of organisms. They play important and diverse roles in cell development, growth, and tumorigenesis, but functions of the majority of circRNAs remain enigmatic. Particularly functional phenotypes of great majority of circRNAs are not obvious. Here we randomly selected a circRNA circ-UBR5, which has no obvious functional phenotype in non-small cell lung cancer (NSCLC) cells from our previous research findings, to explore its potential function in cells. Differential expression of circ-UBR5 was detected in paired samples of tumorous tissues and adjacent nontumorous tissues from 59 patients with NSCLC by real-time quantitative reverse transcription-polymerase chain reactions (qRT-PCRs). Results showed circ-UBR5 expression was significantly downregulated in NSCLC tissues (p < 0.001) and was correlated with tumor differentiation (p = 0.00126), suggesting circ-UBR5 might serve as an index of NSCLC differentiation. Our findings indicated circ-UBR5 could bind splicing regulatory factor QKI, KH domain containing RNA binding (QKI) and NOVA alternative splicing regulator 1 (NOVA1) and U1 small nuclear RNA (snRNA) in the nucleus, revealing circ-UBR5 might be a novel snRNA involved in RNA splicing regulatory process. Moreover, we first presented a highly efficient strategy for finding specific circRNA binding proteins using Human Protein Microarray (Huprot™ Protoarray). Copyright © 2018 The Authors. Published by Elsevier Inc. All rights reserved.

33 CFR Appendix A to Part 154 - Guidelines for Detonation Flame Arresters

Code of Federal Regulations, 2010 CFR

2010-07-01

... (CG-522). 1. Scope 1.1This standard provides the minimum requirements for design, construction.../Circ. 373/Rev. 1—Revised Standards for the Design, Testing and Locating of Devices to Prevent the... maximum design pressure drop for that maximum flow rate. 6.1.10Maximum operating pressure. 7. Materials 7...

Circular RNA and gene expression profiles in gastric cancer based on microarray chip technology.

PubMed

Sui, Weiguo; Shi, Zhoufang; Xue, Wen; Ou, Minglin; Zhu, Ying; Chen, Jiejing; Lin, Hua; Liu, Fuhua; Dai, Yong

2017-03-01

The aim of the present study was to screen gastric cancer (GC) tissue and adjacent tissue for differences in mRNA and circular (circRNA) expression, to analyze the differences in circRNA and mRNA expression, and to investigate the circRNA expression in gastric carcinoma and its mechanism. circRNA and mRNA differential expression profiles generated using Agilent microarray technology were analyzed in the GC tissues and adjacent tissues. qRT-PCR was used to verify the differential expression of circRNAs and mRNAs according to the interactions between circRNAs and miRNAs as well as the possible existence of miRNA and mRNA interactions. We found that: i) the circRNA expression profile revealed 1,285 significant differences in circRNA expression, with circRNA expression downregulated in 594 samples and upregulated in 691 samples via interactions with miRNAs. The qRT-PCR validation experiments showed that hsa_circRNA_400071, hsa_circRNA_000543 and hsa_circRNA_001959 expression was consistent with the microarray analysis results. ii) 29,112 genes were found in the GC tissues and adjacent tissues, including 5,460 differentially expressed genes. Among them, 2,390 differentially expressed genes were upregulated and 3,070 genes were downregulated. Gene Ontology (GO) analysis of the differentially expressed genes revealed these genes involved in biological process classification, cellular component classification and molecular function classification. Pathway analysis of the differentially expressed genes identified 83 significantly enriched genes, including 28 upregulated genes and 55 downregulated genes. iii) 69 differentially expressed circRNAs were found that might adsorb specific miRNAs to regulate the expression of their target gene mRNAs. The conclusions are: i) differentially expressed circRNAs had corresponding miRNA binding sites. These circRNAs regulated the expression of target genes through interactions with miRNAs and might become new molecular biomarkers for GC in the future. ii) Differentially expressed genes may be involved in the occurrence of GC via a variety of mechanisms. iii) CD44, CXXC5, MYH9, MALAT1 and other genes may have important implications for the occurrence and development of GC through the regulation, interaction, and mutual influence of circRNA-miRNA-mRNA via different mechanisms.

Reduced expression of circRNA hsa_circ_0003159 in gastric cancer and its clinical significance.

PubMed

Tian, Mengqian; Chen, Ruoyu; Li, Tianwen; Xiao, Bingxiu

2018-03-01

Circular RNAs (circRNAs) play a crucial role in the occurrence of several diseases including cancers. However, little is known about circRNAs' diagnostic values for gastric cancer, one of the worldwide most common diseases of mortality. The hsa_circ_0003159 levels in 108 paired gastric cancer tissues and adjacent non-tumorous tissues from surgical patients with gastric cancer were first detected by real-time quantitative reverse transcription-polymerase chain reaction. Then, the relationships between hsa_circ_0003159 expression levels in gastric cancer tissues and the clinicopathological factors of patients with gastric cancer were analyzed. Finally, its diagnostic value was evaluated through the receiver operating characteristic curve. Compared with paired adjacent non-tumorous tissues, hsa_circ_0003159 expression was significantly down-regulated in gastric cancer tissues. What is more, we found that hsa_circ_0003159 expression levels were significantly negatively associated with gender, distal metastasis, and tumor-node-metastasis stage. All of the results suggest that hsa_circ_0003159 may be a potential cancer marker of patients with gastric cancer. © 2017 Wiley Periodicals, Inc.

Using circular RNA as a novel type of biomarker in the screening of gastric cancer.

PubMed

Li, Peifei; Chen, Shengcan; Chen, Huilin; Mo, Xiaoyan; Li, Tianwen; Shao, Yongfu; Xiao, Bingxiu; Guo, Junming

2015-04-15

Circular RNAs (circRNAs), a class of endogenous RNAs, have emerged as an enigmatic class of RNAs. Little is known about their value in the diagnosis of cancers. The targeted circRNA of this study was selected using two circRNA databases: CircBase (http://circbase.org/) and circ2Traits (http://gyanxet-beta.com/circdb/). Divergent primers, rather than commonly used convergent primers, for the circRNA were designed. The circRNA levels in 101 paired gastric cancer tissues and adjacent nontumorous tissues from surgical gastric cancer patients and 36 paired plasma samples from preoperative and postoperative gastric cancer patients were analyzed by real-time quantitative reverse transcription-polymerase chain reaction (qRT-PCR). The specificity of the amplified products was measured by melting curve analysis and DNA sequencing. To observe the stability of circRNA, three randomly selected samples of gastric cancer tissues were stored at room temperature, 4°C and -20°C, and then, their circRNA levels were analyzed. To verify the reproducibility of qRT-PCR, circRNA levels were detected in a set of specimens (n=15) in two independent experiments with an interval of one day. Then, the correlation of their Ct values was determined. The relationships between circRNA expression levels and clinicopathological factors of patients with gastric cancer were further analyzed by one-way analysis of variance. A receiver operating characteristic (ROC) curve was established to evaluate the diagnostic value. Hsa_circ_002059, a typical circular RNA, was first found to be significantly downregulated in gastric cancer tissues compared with paired adjacent nontumorous tissues (p<0.001). Its levels in plasma collected from postoperative gastric cancer patients were found significantly different from those from preoperative gastric cancer patients. The area under the ROC curve was 0.73. Importantly, we further found that lower expression levels were significantly correlated with distal metastasis (P=0.036), TNM stage (P=0.042), gender (P=0.002) and age (P=0.022). The stability of circRNAs and the reproducibility of the qRT-PCR method for detecting circRNA levels were determined. These results suggested that circRNAs are highly stable in mammalian cells and that one specific circRNA, hsa_circ_002059, may be a potential novel and stable biomarker for the diagnosis of gastric carcinoma. Copyright © 2015 Elsevier B.V. All rights reserved.

Chemical Beam Epitaxial Growth of Indium Phosphide Using Alternative, Safer Phosphorus Sources

NASA Astrophysics Data System (ADS)

Kim, Chungwoo

1995-11-01

Chemical beam epitaxy (CBE) is a relatively new III-V semiconductor growth technique that combines important advantages of molecular beam epitaxy (MBE) and organometallic vapor phase epitaxy (OMVPE). Although CBE grown-InP using phosphine (PH_3) combined with trimethylindium (TMIn) or triethylindium (TEIn) has produced high quality material comparable to OMVPE-and gas source MBE-grown InP, the highly hazardous and toxic nature of PH_3 is becoming a main obstacle to mass production of semiconductor devices. In this dissertation, InP epilayers were grown using tertiarybutylphosphine (TBP) and bisphosphinoethane (BPE) as possible replacements for PH_3, together with ethyldimethylindium (EDMIn) as the indium source. For the first time, InP epilayers have been grown using TBP and EDMIn by CBE. The surface morphology and the electrical and optical properties improved with increasing substrate and cracker cell temperatures and input V/III ratio. High quality n-type InP epilayers with electron mobilities of up to 3830 cm^2/Vs and net carrier concentrations of approximately 6 times 10^{14} cm^{-3} at room temperature were achieved at a growth temperature of 500^ circC using a V/III ratio of 70 and a TBP cracker cell temperature of 900^circ C. Strong band-edge emission was observed at growth temperatures between 460 and 500^circ C. The bound exciton halfwidth of the sample grown at 500^circC was as narrow as 3.6 meV at 14 K with a barely observable acceptor related peak indicating a very low concentration of acceptors. For growth of InP using BPE and EDMIn, good surface morphologies were obtained at a substrate temperature of 485^circC using V/III ratios of >=q53. At fixed growth and cracker cell temperatures of 485 and 800^circ C, respectively, the net carrier concentration at a V/III ratio of 53 was 7.8 times 10 ^{15} at room temperature and 3.2 times 10^{15} cm^{-3} at 77 K with respective electron mobilities of 3,630 and 21,800 cm^2 /Vs. The 14 K PL spectra were dominated by band -edge emission and exhibited very weak acceptor related peak intensities for InP layers grown at 485^ circC for several different V/III ratios and cracker cell temperatures. The narrowest value of FWHM for the band edge emission was 3.5 meV at 14 K.

Construction and analysis of circular RNA molecular regulatory networks in liver cancer.

PubMed

Ren, Shuangchun; Xin, Zhuoyuan; Xu, Yinyan; Xu, Jianting; Wang, Guoqing

2017-01-01

Liver cancer is the sixth most prevalent cancer, and the third most frequent cause of cancer-related deaths. Circular RNAs (circRNAs), a kind of special endogenous ncRNAs, have been coming back to the forefront of cancer genomics research. In this study, we used a systems biology approach to construct and analyze the circRNA molecular regulatory networks in the context of liver cancer. We detected a total of 127 differentially expressed circRNAs and 3,235 differentially expressed mRNAs. We selected the top-5 upregulated circRNAs to construct a circRNA-miRNA-mRNA network. We enriched the pathways and gene ontology items and determined their participation in cancer-related pathways such as p53 signaling pathway and pathways involved in angiogenesis and cell cycle. Quantitative real-time PCR was performed to verify the top-five circRNAs. ROC analysis showed circZFR, circFUT8, circIPO11 could significantly distinguish the cancer samples, with an AUC of 0.7069, 0.7575, and 0.7103, respectively. Our results suggest the circRNA-miRNA-mRNA network may help us further understand the molecular mechanisms of tumor progression in liver cancer, and reveal novel biomarkers and therapeutic targets.

Circular RNA hsa_circ_0023404 exerts an oncogenic role in cervical cancer through regulating miR-136/TFCP2/YAP pathway.

PubMed

Zhang, Jianhua; Zhao, Xinyuan; Zhang, Jin; Zheng, Xuerong; Li, Fenxia

2018-06-22

Cervical cancer (CC) is one of the most prevalent malignances among women. However, the mechanism underlying CC development remains elusive. Recently, circular RNAs (circRNAs) have been known as important regulators in tumorigenesis. Whether circRNAs are involved in CC requires to be determined. In the present study, we found that circRNA hsa_circ_0023404 was significantly upregulated in CC tissues compared to adjacent normal tissues. And its overexpression was correlated with poor prognosis in CC patients. Functionally, we showed that knockdown of hsa_circ_0023404 significantly suppressed the proliferation, arrested the cell-cycle progression and inhibited cell migration and invasion in CC. In terms of mechanism, we found that hsa_circ_0023404 acted as a sponge of miR-136 and miR-136 targeted TFCP2, which is an activator of YAP signaling pathway. We showed that hsa_circ_0023404 activated YAP pathway in CC via promoting TFCP2 expression by sponging miR-136, leading to CC development and progression. Taken together, our study for the first time demonstrated the pivot role of hsa_circ_0023404 and revealed a novel regulatory loop of hsa_circ_0023404/miR-136/TFCP2/YAP axis in CC progression. Copyright © 2018 Elsevier Inc. All rights reserved.

Downregulated circular RNA hsa_circ_0001649 regulates proliferation, migration and invasion in cholangiocarcinoma cells.

PubMed

Xu, Yi; Yao, Yue; Zhong, Xiangyu; Leng, Kaiming; Qin, Wei; Qu, Lijun; Cui, Yunfu; Jiang, Xingming

2018-02-05

Cholangiocarcinoma (CCA) is one of the most aggressive malignancies with increasing worldwide incidence and is characterized by unfavorable prognosis due to its early invasive characteristics and poor response to chemotherapy or radiotherapy. Accumulating evidence has indicated that aberrantly expressed circular RNAs (circRNAs) are involved in cancer development and progression. However, their clinical values and biological roles in CCA remain unclear. Hsa_circ_0001649, a novel cancer-related circRNA, has been previously reported to be downregulated in hepatocellular carcinoma and gastric cancer. In the present study, qRT-PCR was carried out to measure the expression of hsa_circ_0001649 in CCA tissue samples and cell lines, and the correlation between hsa_circ_0001649 expression and clinicopathologic features was analyzed. The biological functions of hsa_circ_0001649 in CCA cells were evaluated both in vitro and in vivo. As a result, hsa_circ_0001649 was aberrantly downregulated in CCA tissues and cells, and this downregulation was associated with tumor size and differentiation grade in CCA. In addition, hsa_circ_0001649 overexpression caused tumor suppressive effects via inhibiting cell proliferation, migration and invasion; inducing cell apoptosis in KMBC and Huh-28 cells. On the contrary, silencing of hsa_circ_0001649 caused the opposite phenotypes. Furthermore, tumor xenograft study confirmed the in vitro results. Collectively, our findings suggest that hsa_circ_0001649 might be a rational CCA-related therapeutic target. Copyright © 2018 Elsevier Inc. All rights reserved.

A landscape of circular RNA expression in the human heart.

PubMed

Tan, Wilson L W; Lim, Benson T S; Anene-Nzelu, Chukwuemeka G O; Ackers-Johnson, Matthew; Dashi, Albert; See, Kelvin; Tiang, Zenia; Lee, Dominic Paul; Chua, Wee Woon; Luu, Tuan D A; Li, Peter Y Q; Richards, Arthur Mark; Foo, Roger S Y

2017-03-01

Circular RNA (circRNA) is a newly validated class of single-stranded RNA, ubiquitously expressed in mammalian tissues and possessing key functions including acting as microRNA sponges and as transcriptional regulators by binding to RNA-binding proteins. While independent studies confirm the expression of circRNA in various tissue types, genome-wide circRNA expression in the heart has yet to be described in detail. We performed deep RNA-sequencing on ribosomal-depleted RNA isolated from 12 human hearts, 25 mouse hearts and across a 28-day differentiation time-course of human embryonic stem cell-derived cardiomyocytes. Using purpose-designed bioinformatics tools, we uncovered a total of 15 318 and 3017 cardiac circRNA within human and mouse, respectively. Their abundance generally correlates with the abundance of their cognate linear RNA, but selected circRNAs exist at disproportionately higher abundance. Top highly expressed circRNA corresponded to key cardiac genes including Titin (TTN), RYR2, and DMD. The most abundant cardiac-expressed circRNA is a cytoplasmic localized single-exon circSLC8A1-1. The longest human transcript TTN alone generates up to 415 different exonic circRNA isoforms, the majority (83%) of which originates from the I-band domain. Finally, we confirmed the expression of selected cardiac circRNA by RT-PCR, Sanger sequencing and single molecule RNA-fluorescence in situ hybridization. Our data provide a detailed circRNA expression landscape in hearts. There is a high-abundance of specific cardiac-expressed circRNA. These findings open up a new avenue for future investigation into this emerging class of RNA. Published on behalf of the European Society of Cardiology. All rights reserved. © The Author 2016. For Permissions, please email: journals.permissions@oup.com.

Circular RNA In Invasive and Recurrent Clinical Nonfunctioning Pituitary Adenomas: Expression Profiles and Bioinformatic Analysis.

PubMed

Wang, Jianpeng; Wang, Dong; Wan, Dehong; Ma, Qingxia; Liu, Qian; Li, Jiye; Li, Zhaojian; Gao, Yang; Jiang, Guohui; Ma, Leina; Liu, Jia; Li, Chuzhong

2018-06-14

The invasion and recurrence of clinical nonfunctioning pituitary adenomas (NFA) often lead to surgical treatment failure. Circular RNAs (circRNAs) are a novel class of RNAs whose 3' and 5' ends are joined together and have been shown to play important roles in cancer development. Up to now, the roles of circRNAs remain unclear in invasive and recurrent NFA. We detected and summarized the circRNA expression pattern in 75 NFA tissues from 10 non-invasive cases and 65 invasive cases and 9 pairs NFA tumor tissues from 9 recurrent cases by circRNA microarrays. Accordingly, functional enrichment analysis and pathway analysis were performed and circRNA-microRNA(miRNA) network were generated by bioinformatic analysis tools. 5 new invasive NFA samples and 5 non-invasive NFA samples were collected to measure the microarray results. 570 dysregulated circRNAs (Invasive Tumor vs. Non-invasive Tumor) and 10 up-regulated circRNAs (Recurrent tumor Tissue vs. First surgery tumor Tissue) were identified based on the situation (FC>2, P<0.05). The parental genes of the dysregulated circRNAs in the comparison between invasion tumor and non-invasion tumor were found to be enriched in some cell adhesion signaling pathways such as Focal adhesion, Hippo signaling pathway, PI3K-Akt signaling pathway, and Adherens junction. The circRNA-miRNA network showed that the dysregulated circRNA may function as miRNA sponges. This is the first study to conduct and comprehensively analyze the circRNA expression profile in invasive and recurrent NFA. Our finding will provide evidence for the significance of circRNAs in NFA diagnosis, prognosis and clinical treatment. Copyright © 2018 Elsevier Inc. All rights reserved.

On-orbit performance of the Compact Infrared Camera (CIRC) onboard ALOS-2

NASA Astrophysics Data System (ADS)

Sakai, Michito; Katayama, Haruyoshi; Kato, Eri; Nakajima, Yasuhiro; Kimura, Toshiyoshi; Nakau, Koji

2015-10-01

Compact Infrared Camera (CIRC) is a technology demonstration instrument equipped with an uncooled infrared array detector (microbolometer) for space application. Microbolometers have an advantage of not requiring cooling system such as a mechanical cooler and are suitable for resource-limited sensor systems. Another characteristic of the CIRC is its use of an athermal optical system and a shutterless system. The CIRC is small in size (approximately 200 mm), is light weight (approximately 3 kg), and has low electrical power consumption (<20 W) owing to these characteristics. The main objective of CIRC is to detect wildfires, which are major and chronic disasters affecting various countries of Southeast Asia, particularly considering the effects of global warming and climate change. One of the CIRCs was launched in May 24, 2014 as a technology demonstration payload of the Advanced Land Observation Satellite-2 (ALOS- 2). Since the initial functional verification phase (July 4-14, 2014), the CIRC has demonstrated functions according to its intended design. We also confirmed that the noise equivalent differential temperature of the CIRC observation data is less than 0.2 K, the temperature accuracy is within ±4 K, and the spatial resolution is less than 210 m in the calibration validation phase after the initial functional verification phase. The CIRC also detects wildfires in various areas and observes volcano activities and urban heat islands in the operational phase. The other CIRC will be launched in 2015 onboard the CALorimetric Electron Telescope (CALET) of the Japanese Experiment Module (JEM) of the International Space Station. Installation of the CIRCs on the ALOS-2 and on the JEM/CALET is expected to increase the observation frequency. In this study, we present the on-orbit performance including observational results of the CIRC onboard the ALOS-2 and the current status of the CIRC onboard the JEM/CALET.

Screening circular RNA related to chemotherapeutic resistance in breast cancer.

PubMed

Gao, Danfeng; Zhang, Xiufen; Liu, Beibei; Meng, Dong; Fang, Kai; Guo, Zijian; Li, Lihua

2017-09-01

We aimed to identify circular RNAs (circRNAs) associated with breast cancer chemoresistance. CircRNA microarray expression profiles were obtained from Adriamycin (ADM) resistant MCF-7 breast cancer cells (MCF-7/ADM) and parental MCF-7 cells and were validated using quantitative real-time reverse transcription PCR. The expression data were analyzed bioinformatically. We detected 3093 circRNAs and identified 18 circRNAs that are differentially expressed between MCF-7/ADM and MCF-7 cells; after validating by quantitative real-time reverse transcription PCR, we predicted the possible miRNAs and potential target genes of the seven upregulated circRNAs using TargetScan and miRanda. The bioinformatics analysis revealed several target genes related to cancer-related signaling pathways. Additionally, we discovered a regulatory role of the circ_0006528-miR-7-5p-Raf1 axis in ADM-resistant breast cancer. These results revealed that circRNAs may play a role in breast cancer chemoresistance and that hsa_circ_0006528 might be a promising candidate for further functional analysis.

The Landscape of Circular RNA Expression Profiles in Papillary Thyroid Carcinoma Based on RNA Sequencing.

PubMed

Lan, Xiabin; Xu, Jiajie; Chen, Chao; Zheng, Chuanming; Wang, Jiafeng; Cao, Jun; Zhu, Xuhang; Ge, Minghua

2018-05-25

Papillary thyroid carcinoma (PTC) is the most common type of thyroid cancer. However, the molecular mechanisms responsible for its tumorigenesis and progression remain largely unknown. Circular RNA (circRNA) is a novel type of noncoding RNA that can serve as an ideal biomarker due to its stability. Recent evidence suggests that circRNAs play important roles in tumorigenesis. This study aims to investigate circRNA expression profiles and their potential biological functions in PTC. High-throughput RNA sequencing was used to assess circRNA expression profiles in PTC, and quantitative real-time polymerase chain reaction (qRT-PCR) was used to validate dysregulated circRNAs. Receiver operating characteristic (ROC) curves were generated to evaluate the diagnostic value of circRNAs for PTC. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses were employed to determine the biological functions of differentially expressed circRNAs. Bioinformatic analyses were applied to predict interactions between circRNAs and microRNAs (miRNAs), and a circRNA-miRNA-mRNA network was constructed using Cytoscape software. We identified a number of differentially expressed circRNAs in PTC tissues compared with paired normal thyroid tissues, with chr5: 160757890-160763776-, chr12: 40696591-40697936+, chr7: 22330794-22357656-, and chr21: 16386665-16415895- being upregulated, and chr7: 91924203-91957214+, chr2: 179514891-179516047-, chr9: 16435553-16437522-, and chr22: 36006931-36007153- being downregulated. These findings were confirmed by qRT-PCR, and ROC curves indicated that they can serve as potential biomarkers for PTC. GO and KEGG pathway analyses showed that some of these circRNAs are related to cancers. Additionally, bioinformatic analyses revealed a potential competing-endogenous-RNA-regulating network among circRNAs, miRNAs, and mRNAs. Our study results depict the landscape of circRNA expression profiles in PTC and also provide potential biomarkers for PTC. Further functional and mechanistic studies of these circRNAs may improve our understanding of PTC tumorigenesis. © 2018 The Author(s). Published by S. Karger AG, Basel.

Circular RNA expression profiles in placental villi from women with gestational diabetes mellitus.

PubMed

Yan, Linping; Feng, Jie; Cheng, Feng; Cui, Xianwei; Gao, Lingjuan; Chen, Yajun; Wang, Fei; Zhong, Tianying; Li, Yun; Liu, Lan

2018-04-15

Circular RNAs (circRNAs) have recently been shown to exert their effects on multiple pathological processes by acting as microRNA (miRNA) sponges. However, the roles of circRNAs in gestational diabetes mellitus (GDM) are largely unknown. This study aimed to identify the circRNAs involved in GDM and predict their potential biological functions. We first performed next-generation sequencing (NGS) to generate unbiased placental villi circRNA expression profiles of GDM and normal controls. In total, 48,270 circRNAs from the placental villi of the two groups were sequenced. Of these, 227 circRNAs were significantly up-regulated and 255 circRNAs were significantly down-regulated. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) biological pathway analyses demonstrated that glycometabolism and lipometabolism processes, which are important in GDM development, were significantly enriched. Further analysis showed that most of the circRNAs harbored miRNA binding sites, and some were associated with GDM. These results showed that circRNAs are aberrantly expressed in the placental villi of GDM patients and play potential roles in the development of GDM. Copyright © 2018 Elsevier Inc. All rights reserved.

Integrative analysis of circRNAs acting as ceRNAs involved in ethylene pathway in tomato.

PubMed

Wang, Yunxiang; Wang, Qing; Gao, Lipu; Zhu, Benzhong; Luo, Yunbo; Deng, Zhiping; Zuo, Jinhua

2017-11-01

Circular RNAs (circRNAs) are a large class of non-coding endogenous RNAs that could act as competing endogenous RNAs (ceRNAs) to terminate the mRNA targets' suppression of miRNAs. To elucidate the intricate regulatory roles of circRNAs in the ethylene pathway in tomato fruit, deep sequencing and bioinformatics methods were performed. After strict screening, a total of 318 circRNAs were identified. Among these circRNAs, 282 were significantly differentially expressed among wild-type and sense-/antisense-LeERF1 transgenic tomato fruits. Besides, 1254 target genes were identified and a large amount of them were found to be involved in ethylene pathway. In addition, a sophisticated regulatory model consisting of circRNAs, target genes and ethylene was set up. Importantly, 61 circRNAs were found to be potential ceRNAs to combine with miRNAs and some of the miRNAs had been revealed to participate in the ethylene signaling pathway. This research further raised the possibility that the ethylene pathway in tomato fruit may be under the regulation of various circRNAs and provided a new perspective of the roles of circRNAs. © 2017 Scandinavian Plant Physiology Society.

Circular RNA hsa_circRNA_103809 promotes lung cancer progression via facilitating ZNF121-dependent MYC expression by sequestering miR-4302.

PubMed

Liu, Wei; Ma, Weiming; Yuan, Yuan; Zhang, Youwei; Sun, Sanyuan

2018-06-12

Lung cancer characterized with malignant cell growth is the leading cause of cancer-related deaths. In recent years, several circular RNAs (circRNAs) have been reported to participate in lung cancer progression. However, the correlation between circular RNA (circRNA) and lung cancer still remains to be further investigated. In this study, we screened out a highly expressed circular RNA hsa_circRNA_103809 in lung cancer tissues. We showed hsa_circRNA_103809 could serve as a prognostic biomarker for patients with lung cancer. Furthermore, we found that hsa_circRNA_103809 knockdown significantly suppressed lung cancer cell proliferation and invasion in vitro and delayed tumor growth in vivo. In mechanism, we identified hsa_circRNA_103809 as a sponge of miR-4302 targeting ZNF121. By sequestering miR-4302, hsa_circRNA_103809 promoted the expression of ZNF121 which consequently enhanced MYC protein level in lung cancer cells. Through rescue assays, we demonstrated hsa_circRNA_103809 contributed to lung cancer cell proliferation and invasion via facilitating ZNF121-dependent MYC expression by sponging miR-4302. In conclusion, our findings illustrated a novel hsa_circRNA_103809/miR-4302/ZNF121/MYC regulatory signaling pathway in lung cancer progression. Copyright © 2018 Elsevier Inc. All rights reserved.

A potential risk factor of essential hypertension in case-control study: Circular RNA hsa_circ_0037911.

PubMed

Bao, Xingjie; Zheng, Shuying; Mao, Shuqi; Gu, Tianlun; Liu, Shike; Sun, Jihan; Zhang, Lina

2018-04-15

Essential hypertension (EH) is a high prevalence with multifactorial diseases. Human studies on the impact of genes on this disease are just in the initial stage, the mechanism of gene regulation is still remains unclear. Circular RNAs (circRNAs) as a continuous cycle of covalent closure, RNA molecules added to the 3'-5' end covalently bound by the formation of incidental event. CircRNAs may be an important biomolecule in revealing the molecule regulate mechanisms of EH. The circRNAs were selected and validated with qRT-PCR followed. Our experiment was conducted with case-control studies among 200 EH participants. The t-test was used to evaluate the different expression of circRNAs and miRNAs, the significance of which was set as p < 0.05. The hsa_circ_0037911 expression level in EH cases were significantly higher than healthy controls (p = 0.005). There was still important significance when adjusted by logistic regression (adjusted p = 0.026). We also found that hsa_circ_0037911 was an effective marker of EH (area under curve = 0.627; p = 0.002). The levels of hsa_circ_0037911 were significantly differences in gender, BMI, smoking and drinking among EH cases. There was a positive correlation between Serum creatinine (Scr) and hsa_circ_0037911. Our findings suggested that higher expression hsa_circ_0037911 may be key circRNAs for EH development by changing the concentration of Scr and could be a stable biomarker for early diagnosis of EH. Copyright © 2018 Elsevier Inc. All rights reserved.

Androgen-responsive circular RNA circSMARCA5 is up-regulated and promotes cell proliferation in prostate cancer.

PubMed

Kong, Zhe; Wan, Xuechao; Zhang, Yalong; Zhang, Pu; Zhang, Yingyi; Zhang, Xiaona; Qi, Xiaoxiang; Wu, Hai; Huang, Jianfeng; Li, Yao

2017-11-25

Prostate cancer (PCa) is one of the most commonly diagnosed cancers in males worldwide. Circular RNA (circRNA) is a unique class of RNA transcribed by RNA polymerase II characterized by jointing 3' and 5' ends together via exon or intron circularization. However, the molecular functions of circRNAs in prostate cancer have rarely been explored. In present study, we found circ-SMARCA5 was up-regulated in prostate cancer samples compared to match normal tissues. We also observed circ-SMARCA5 expression was significantly induced after DHT treatment. Functional experiments showed circ-SMARCA5 acted as an oncogene in prostate cancer by promoting cell cycle and inhibiting cell apoptosis. We thought this study provided useful information for exploring circRNAs as potential therapeutic and prognostic targets for prostate cancer. Copyright © 2017. Published by Elsevier Inc.

Identification and Characterization of Circular RNAs As a New Class of Putative Biomarkers in Human Blood

PubMed Central

Peters, Oliver; Rajewsky, Nikolaus

2015-01-01

Covalently closed circular RNA molecules (circRNAs) have recently emerged as a class of RNA isoforms with widespread and tissue specific expression across animals, oftentimes independent of the corresponding linear mRNAs. circRNAs are remarkably stable and sometimes highly expressed molecules. Here, we sequenced RNA in human peripheral whole blood to determine the potential of circRNAs as biomarkers in an easily accessible body fluid. We report the reproducible detection of thousands of circRNAs. Importantly, we observed that hundreds of circRNAs are much higher expressed than corresponding linear mRNAs. Thus, circRNA expression in human blood reveals and quantifies the activity of hundreds of coding genes not accessible by classical mRNA specific assays. Our findings suggest that circRNAs could be used as biomarker molecules in standard clinical blood samples. PMID:26485708

Circular RNA alterations are involved in resistance to avian leukosis virus subgroup-J-induced tumor formation in chickens.

PubMed

Zhang, Xinheng; Yan, Yiming; Lei, Xiaoya; Li, Aijun; Zhang, Huanmin; Dai, Zhenkai; Li, Xinjian; Chen, Weiguo; Lin, Wencheng; Chen, Feng; Ma, Jingyun; Xie, Qingmei

2017-05-23

Avian leukosis virus subgroup (ALV-J) is an oncogenic neoplasm-inducing retrovirus that causes significant economic losses in the poultry industry. Recent studies have demonstrated circular RNAs (circRNAs) are implicated in pathogenic processes; however, no research has indicated circRNAs are involved in resistance to disease. In this study, over 1800 circRNAs were detected by circRNA sequencing of liver tissues from ALV-J-resistant (n = 3) and ALV-J-susceptible chickens (n = 3). 32 differentially expressed circRNAs were selected for analyzing including 12 upregulated in ALV-J-resistant chickens and 20 upregulated in ALV-J-susceptible chickens, besides, the top five microRNAs (miRNAs) for 12 upregulated circRNAs in ALV-J-resistant chickens were analyzed. Gene ontology and KEGG pathway analyses were performed for miRNA target genes, the predicted genes were mainly involved in immune pathways. This study provides the first evidence that circRNA alterations are involved in resistance to ALV-J-induced tumor formation. We propose circRNAs may help to mediate tumor induction and development in chickens.

Circular RNA Expression Profile of Pancreatic Ductal Adenocarcinoma Revealed by Microarray.

PubMed

Li, Haimin; Hao, Xiaokun; Wang, Huimin; Liu, Zhengcai; He, Yong; Pu, Meng; Zhang, Hongtao; Yu, Hengchao; Duan, Juanli; Qu, Shibin

2016-01-01

Circular RNAs (circRNAs) are a special novel type of a stable, diverse and conserved noncoding RNA in mammalian cells. Particularly in cancer, circRNAs have been reported to be widely involved in the physiological/pathological process of life. However, it is unclear whether circRNAs are specifically involved in pancreatic ductal adenocarcinoma (PDAC). We investigated the expression profile of circRNAs in six PDAC cancer samples and paired adjacent normal tissues using microarray. A high-throughput circRNA microarray was used to identify dysregulated circular RNAs in six PDAC patients. Bioinformatic analyses were applied to study these differentially expressed circRNAs. Furthermore, quantitative reverse transcription polymerase chain reaction (qRT-PCR) was performed to confirm these results. We revealed and confirmed that a number of circRNAs were dysregulated, which suggests a potential role in pancreatic cancer. this study demonstrates that clusters of circRNAs are aberrantly expressed in PDAC compared with normal samples and provides new potential targets for the future treatment of PDAC and novel insights into PDAC biology. © 2016 The Author(s) Published by S. Karger AG, Basel.

Circular RNAs: A novel type of biomarker and genetic tools in cancer

PubMed Central

Han, Yi-Neng; Xia, Sheng-Qiang; Zhang, Yuan-Yuan; Zheng, Jun-Hua; Li, Wei

2017-01-01

Circular RNAs (circRNAs) are a novel type of universal and diverse endogenous noncoding RNAs (ncRNAs) and they form a covalently closed continuous loop without 5′ or 3′ tails unlike linear RNAs. Most circRNAs are presented with characteristics of abundance, stability, conservatism, and often exhibiting tissue/developmental-stage-specific expression. CircRNAs are generated either from exons or introns by back splicing or lariat introns. CircRNAs play important roles as miRNA sponges, gene transcription and expression regulators, RNA-binding protein (RBP) sponges and protein/peptide translators. Emerging evidence revealed the function of circRNAs in cancer and may potentially serve as a required novel biomarker and therapeutic target for cancer treatment. In this review, we discuss about the origins, characteristics and functions of circRNA and how they work as miRNA sponges, gene transcription and expression regulators, RBP sponges in cancer as well as current research methods of circRNAs, providing evidence for the significance of circRNAs in cancer diagnosis and clinical treatment. PMID:28969093

Circular RNA: A new star of noncoding RNAs.

PubMed

Qu, Shibin; Yang, Xisheng; Li, Xiaolei; Wang, Jianlin; Gao, Yuan; Shang, Runze; Sun, Wei; Dou, Kefeng; Li, Haimin

2015-09-01

Circular RNAs (circRNAs) are a novel type of RNA that, unlike linear RNAs, form a covalently closed continuous loop and are highly represented in the eukaryotic transcriptome. Recent studies have discovered thousands of endogenous circRNAs in mammalian cells. CircRNAs are largely generated from exonic or intronic sequences, and reverse complementary sequences or RNA-binding proteins (RBPs) are necessary for circRNA biogenesis. The majority of circRNAs are conserved across species, are stable and resistant to RNase R, and often exhibit tissue/developmental-stage-specific expression. Recent research has revealed that circRNAs can function as microRNA (miRNA) sponges, regulators of splicing and transcription, and modifiers of parental gene expression. Emerging evidence indicates that circRNAs might play important roles in atherosclerotic vascular disease risk, neurological disorders, prion diseases and cancer; exhibit aberrant expression in colorectal cancer (CRC) and pancreatic ductal adenocarcinoma (PDAC); and serve as diagnostic or predictive biomarkers of some diseases. Similar to miRNAs and long noncoding RNAs (lncRNAs), circRNAs are becoming a new research hotspot in the field of RNA and could be widely involved in the processes of life. Herein, we review the formation and properties of circRNAs, their functions, and their potential significance in disease. Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.

Profiling and Validation of the Circular RNA Repertoire in Adult Murine Hearts.

PubMed

Jakobi, Tobias; Czaja-Hasse, Lisa F; Reinhardt, Richard; Dieterich, Christoph

2016-08-01

For several decades, cardiovascular disease has been the leading cause of death throughout all countries. There is a strong genetic component to many disease subtypes (e.g., cardiomyopathy) and we are just beginning to understand the relevant genetic factors. Several studies have related RNA splicing to cardiovascular disease and circular RNAs (circRNAs) are an emerging player. circRNAs, which originate through back-splicing events from primary transcripts, are resistant to exonucleases and typically not polyadenylated. Initial functional studies show clear phenotypic outcomes for selected circRNAs. We provide, for the first time, a comprehensive catalogue of RNase R-resistant circRNA species for the adult murine heart. This work combines state-of-the-art circle sequencing with our novel DCC software to explore the circRNA landscape of heart tissue. Overall, we identified 575 circRNA species that pass a beta-binomial test for enrichment (false discovery rate of 1%) in the exonuclease-treated sequencing sample. Several circRNAs can be directly attributed to host genes that have been previously described as associated with cardiovascular disease. Further studies of these candidate circRNAs may reveal disease-relevant properties or functions of specific circRNAs. Copyright © 2016 The Authors. Production and hosting by Elsevier Ltd.. All rights reserved.

Genome-wide maps of m6A circRNAs identify widespread and cell-type-specific methylation patterns that are distinct from mRNAs

PubMed Central

Zhou, Chan; Molinie, Benoit; Daneshvar, Kaveh; Pondick, Joshua V.; Wang, Jinkai; Van Wittenberghe, Nicholas O.; Xing, Yi; Giallourakis, Cosmas C.; Mullen, Alan C.

2017-01-01

Summary N6-methyladenosine (m6A) is the most abundant internal modification of mRNAs and is implicated in all aspects of post-transcriptional RNA metabolism. However, little is known about m6A modifications to circular (circ) RNAs. We developed a computational pipeline (AutoCirc) that together with depletion of ribosomal RNA and m6A immunoprecipitation defined thousands of m6A-circRNAs, with cell-type-specific expression. The presence of m6A-circRNAs is corroborated by interaction between circRNAs and YTHDF1/YTHDF2, proteins that read m6A sites in mRNAs, and by reduced m6A levels upon depletion of METTL3, the m6A writer. Despite sharing m6A readers and writers, m6A-circRNAs are frequently derived from exons that are not methylated in mRNAs, while mRNAs that are methylated on the same exons that compose m6A-circRNAs exhibit less stability, in a process regulated by YTHDF2. These results expand our understanding of the breadth of m6A modifications and uncover regulation of circRNAs through m6A modification. PMID:28854373

Circular RNA HIPK3 promotes gallbladder cancer cell growth by sponging microRNA-124.

PubMed

Kai, Ding; Yannian, Liao; Yitian, Chen; Dinghao, Gong; Xin, Zhao; Wu, Ji

2018-06-18

Recent studies have implied that circHIPK3, an abundant circular RNA (circRNA), participates in tumorigenesis and cancer progression. Its expression and potential functions in human gallbladder cancer were examined in this study. We show that circHIPK3 is upregulated in human gallbladder cancer cells. But its level is low in gallbladder epithelial cells. circHIPK3 silencing by targeted siRNA potently inhibited survival and proliferation of established and primary human gallbladder cancer cells, while inducing cell apoptosis. Conversely, ectopic over-expression of circHIPK3 can further promote cancer cell proliferation. In gallbladder cancer cells, circHIPK3 sponged the tumor-suppressive microRNA-124 (miR-124) to sequester and inhibit its activity, thereby leading to increased expression of miR-124 targets, including ROCK1 (rho-associated protein kinase 1) and CDK6 (rho-associated protein kinase). Ectopic over-expression of miR-124 b y a lentiviral vector mimicked and abolished actions by circHIPK3 siRNA in gallbladder cancer cells. At last, we show that circHIPK3 is upregulated in human gallbladder cancer tissues, which is correlated with miR-124 downregulation and ROCK1-CDK6 upregulation. Together, we conclude that circHIPK3 promotes gallbladder cancer cell growth possibly by sponging miR-124. The over-expressed circHIPK3 could be a novel therapeutic target and diagnosis marker of human gallbladder cancer. Copyright © 2018. Published by Elsevier Inc.

Circular RNA circMAN2B2 facilitates lung cancer cell proliferation and invasion via miR-1275/FOXK1 axis.

PubMed

Ma, Xuemei; Yang, Xiaodong; Bao, Wenhua; Li, Shumin; Liang, Shanshan; Sun, Yunhui; Zhao, Yunwei; Wang, Jing; Zhao, Chenxu

2018-04-15

Lung cancer remains a leading cause of cancer-related deaths worldwide. In the past years, increasing reports indicate that circular RNAs (circRNAs) exert a great important role in human cancers, including lung cancer. However, the knowledge about circRNA in lung cancer remains very little so far. In the present study, we screened out a highly expressed novel circRNA named circMAN2B2 in lung cancer tissues. We investigated the function of circMAN2B2 and found that circMAN2B2 knockdown significantly inhibited cell proliferation and invasion in both H1299 and A549 lung cancer cells. Mechanistically, we found that circMAN2B2 could sponge miR-1275 to inhibit its level. Through a series of functional experiments, we dissected the role of miR-1275 in lung cancer and proved the anti-tumor role of miR-1275. Furthermore, we found that miR-1275 exerted its role in lung cancer by regulating FOXK1 expression. In addition, we demonstrated that restoration of FOXK1 could rescue circMAN2B2 knockdown-induced repression of cell proliferation and invasion. Taken together, our study demonstrated that circMAN2B2 acts as an oncogenic role in lung cancer through promoting FOXK1 expression by sponging miR-1275. Copyright © 2018 Elsevier Inc. All rights reserved.

Identification and Characterization of Hypoxia-Regulated Endothelial Circular RNA.

PubMed

Boeckel, Jes-Niels; Jaé, Nicolas; Heumüller, Andreas W; Chen, Wei; Boon, Reinier A; Stellos, Konstantinos; Zeiher, Andreas M; John, David; Uchida, Shizuka; Dimmeler, Stefanie

2015-10-23

Circular RNAs (circRNAs) are noncoding RNAs generated by back splicing. Back splicing has been considered a rare event, but recent studies suggest that circRNAs are widely expressed. However, the expression, regulation, and function of circRNAs in vascular cells is still unknown. Here, we characterize the expression, regulation, and function of circRNAs in endothelial cells. Endothelial circRNAs were identified by computational analysis of ribo-minus RNA generated from human umbilical venous endothelial cells cultured under normoxic or hypoxic conditions. Selected circRNAs were biochemically characterized, and we found that the majority of them lacks polyadenylation, is resistant to RNase R digestion and localized to the cytoplasm. We further validated the hypoxia-induced circRNAs cZNF292, cAFF1, and cDENND4C, as well as the downregulated cTHSD1 by reverse transcription polymerase chain reaction in cultured endothelial cells. Cloning of cZNF292 validated the predicted back splicing of exon 4 to a new alternative exon 1A. Silencing of cZNF292 inhibited cZNF292 expression and reduced tube formation and spheroid sprouting of endothelial cells in vitro. The expression of pre-mRNA or mRNA of the host gene was not affected by silencing of cZNF292. No validated microRNA-binding sites for cZNF292 were detected in Argonaute high-throughput sequencing of RNA isolated by cross-linking and immunoprecipitation data sets, suggesting that cZNF292 does not act as a microRNA sponge. We show that the majority of the selected endothelial circRNAs fulfill all criteria of bona fide circRNAs. The circRNA cZNF292 exhibits proangiogenic activities in vitro. These data suggest that endothelial circRNAs are regulated by hypoxia and have biological functions. © 2015 American Heart Association, Inc.

Decreased expression of hsa_circ_0137287 predicts aggressive clinicopathologic characteristics in papillary thyroid carcinoma.

PubMed

Lan, Xiabin; Cao, Jun; Xu, Jiajie; Chen, Chao; Zheng, Chuanming; Wang, Jiafeng; Zhu, Xuhang; Zhu, Xin; Ge, Minghua

2018-05-22

Circular RNA (circRNA) is a new type of noncoding RNA that can serve as ideal biomarkers. Evidence has showed that circRNAs play an important role in carcinogenesis and cancer development. However, little is known about the diagnostic value of circRNAs in papillary thyroid carcinoma (PTC) as well as their associations with clinicopathologic characteristics of patients with PTC. The expression levels of hsa_circ_0137287 were detected in 120 PTC and 60 adjacent noncancerous thyroid tissues by quantitative real-time polymerase chain reaction. The relationships between the expression of hsa_circ_0137287 in PTC and the clinicopathologic factors were analyzed. Finally, receiver operating characteristic (ROC) curves were generated to assess the diagnostic value of hsa_circ_0137287 as a biomarker for PTC. The expression of hsa_circ_0137287 was significantly downregulated in PTC tissues compared with adjacent noncancerous tissues (P < .0001). Downregulation of hsa_circ_0137287 correlated with aggressive clinicopathologic characteristics of PTC such as extrathyroidal extension (P < .001), lymph node metastasis (P = .022), advanced T stage (P < .001) and larger tumor size (P < .001). The ROC curves revealed that hsa_circ_0137287 had a potential diagnostic value in predicting malignancy, extrathyroidal extension and lymph node metastasis. The area under curves were 0.8973 (95% CI = 0.8452-0.9494, P < .0001), 0.6885 (95%CI = 0.5908-0.7862, P = .0009), and 0.6691(95%CI = 0.5641-0.7742, P = .0034), respectively. Our findings suggest that hsa_circ_0137287 may serve as a novel biomarker for PTC. © 2018 Wiley Periodicals, Inc.

Analysis of human ES cell differentiation establishes that the dominant isoforms of the lncRNAs RMST and FIRRE are circular.

PubMed

Izuogu, Osagie G; Alhasan, Abd A; Mellough, Carla; Collin, Joseph; Gallon, Richard; Hyslop, Jonathon; Mastrorosa, Francesco K; Ehrmann, Ingrid; Lako, Majlinda; Elliott, David J; Santibanez-Koref, Mauro; Jackson, Michael S

2018-04-20

Circular RNAs (circRNAs) are predominantly derived from protein coding genes, and some can act as microRNA sponges or transcriptional regulators. Changes in circRNA levels have been identified during human development which may be functionally important, but lineage-specific analyses are currently lacking. To address this, we performed RNAseq analysis of human embryonic stem (ES) cells differentiated for 90 days towards 3D laminated retina. A transcriptome-wide increase in circRNA expression, size, and exon count was observed, with circRNA levels reaching a plateau by day 45. Parallel statistical analyses, controlling for sample and locus specific effects, identified 239 circRNAs with expression changes distinct from the transcriptome-wide pattern, but these all also increased in abundance over time. Surprisingly, circRNAs derived from long non-coding RNAs (lncRNAs) were found to account for a significantly larger proportion of transcripts from their loci of origin than circRNAs from coding genes. The most abundant, circRMST:E12-E6, showed a > 100X increase during differentiation accompanied by an isoform switch, and accounts for > 99% of RMST transcripts in many adult tissues. The second most abundant, circFIRRE:E10-E5, accounts for > 98% of FIRRE transcripts in differentiating human ES cells, and is one of 39 FIRRE circRNAs, many of which include multiple unannotated exons. Our results suggest that during human ES cell differentiation, changes in circRNA levels are primarily globally controlled. They also suggest that RMST and FIRRE, genes with established roles in neurogenesis and topological organisation of chromosomal domains respectively, are processed as circular lncRNAs with only minor linear species.

Identification of differentially expressed circular RNAs in human colorectal cancer.

PubMed

Zhang, Peili; Zuo, Zhigui; Shang, Wenjing; Wu, Aihua; Bi, Ruichun; Wu, Jianbo; Li, Shaotang; Sun, Xuecheng; Jiang, Lei

2017-03-01

Circular RNA, a class of non-coding RNA, is a new group of RNAs and is related to tumorigenesis. Circular RNAs are suggested to be ideal candidate biomarkers with potential diagnostic and therapeutic implications. However, little is known about their expression in human colorectal cancer. In our study, differentially expressed circular RNAs were detected using circular RNA array in paired tumor and adjacent non-tumorous tissues from six colorectal cancer patients. Expression levels of selected circular RNAs (hsa_circRNA_103809 and hsa_circRNA_104700) were measured by real-time polymerase chain reaction in 170 paired colorectal cancer samples for validation. Statistical analyses were conducted to investigate the association between hsa_circRNA_103809 and hsa_circRNA_104700 expression levels and respective patient clinicopathological features. Receiver operating characteristic curve was constructed to evaluate the diagnostic values. Our results indicated that there were 125 downregulated and 76 upregulated circular RNAs in colorectal cancer tissues compared with normal tissues. We also first demonstrated that the expression levels of hsa_circRNA_103809 ( p < 0.0001) and hsa_circRNA_104700 ( p = 0.0003) were significantly lower in colorectal cancer than in normal tissues. The expression level of hsa_circRNA_103809 was significantly correlated with lymph node metastasis ( p = 0.021) and tumor-node-metastasis stage ( p = 0.011), and the expression level of hsa_circRNA_104700 was significantly correlated with distal metastasis ( p = 0.036). The area under receiver operating characteristic curves of hsa_circRNA_103809 and hsa_circRNA_104700 were 0.699 ( p < 0.0001) and 0.616 ( p < 0.0001), respectively. In conclusion, these results suggest that hsa_circRNA_103809 and hsa_circRNA_104700 may be potentially involved in the development of colorectal cancer and serve as potential biomarkers for the diagnosis of colorectal cancer.

Searching for a Cosmological Preferred Direction with 147 Rotationally Supported Galaxies

NASA Astrophysics Data System (ADS)

Zhou, Yong; Zhao, Zhi-Chao; Chang, Zhe

2017-10-01

It is well known that the Milgrom’s modified Newtonian dynamics (MOND) explains well the mass discrepancy problem in galaxy rotation curves. The MOND predicts a universal acceleration scale below which the Newtonian dynamics is still invalid. We get the universal acceleration scale of 1.02 × 10-10 m s-2 by using the Spitzer Photometry and Accurate Rotation Curves (SPARC) data set. Milgrom suggested that the acceleration scale may be a fingerprint of cosmology on local dynamics and related to the Hubble constant g † ˜ cH 0. In this paper, we use the hemisphere comparison method with the SPARC data set to investigate possible spatial anisotropy on the acceleration scale. It is found that the hemisphere of the maximum acceleration scale is in the direction (l,b)=(175\\buildrel{\\circ}\\over{.} {5}-{10^\\circ }+{6^\\circ }, -6\\buildrel{\\circ}\\over{.} {5}-{3^\\circ }+{9^\\circ }) with g †,max = 1.10 × 10-10 m s-2, while the hemisphere of the minimum acceleration scale is in the opposite direction (l,b)=(355\\buildrel{\\circ}\\over{.} {5}-{10^\\circ }+{6^\\circ }, 6\\buildrel{\\circ}\\over{.} {5}-{9^\\circ }+{3^\\circ }) with g †,min = 0.76 × 10-10 m s-2. The level of anisotropy reaches up to 0.37 ± 0.04. Robust tests show that such an anisotropy cannot be reproduced by a statistically isotropic data set. We also show that the spatial anisotropy on the acceleration scale is less correlated with the non-uniform distribution of the SPARC data points in the sky. In addition, we confirm that the anisotropy of the acceleration scale does not depend significantly on other physical parameters of the SPARC galaxies. It is interesting to note that the maximum anisotropy direction found in this paper is close with other cosmological preferred directions, particularly the direction of the “Australia dipole” for the fine structure constant.

TTBK2 circular RNA promotes glioma malignancy by regulating miR-217/HNF1β/Derlin-1 pathway.

PubMed

Zheng, Jian; Liu, Xiaobai; Xue, Yixue; Gong, Wei; Ma, Jun; Xi, Zhuo; Que, Zhongyou; Liu, Yunhui

2017-02-20

Circular RNAs are a subgroup of non-coding RNAs and generated by a mammalian genome. Herein, the expression and function of circular RNA circ-TTBK2 were investigated in human glioma cells. Fluorescence in situ hybridization and quantitative real-time PCR were conducted to profile the cell distribution and expression of circ-TTBK2 and microRNA-217 (miR-217) in glioma tissues and cells. Immunohistochemical and western blot were used to determine the expression of HNF1β and Derlin-1 in glioma tissues and cells. Stable knockdown of circ-TTBK2 or overexpression of miR-217 glioma cell lines (U87 and U251) were established to explore the function of circ-TTBK2 and miR-217 in glioma cells. Further, luciferase reports and RNA immunoprecipitation were used to investigate the correlation between circ-TTBK2 and miR-217. Cell Counting Kit-8, transwell assays, and flow cytometry were used to investigate circ-TTBK2 and miR-217 function including cell proliferation, migration and invasion, and apoptosis, respectively. ChIP assays were used to ascertain the correlations between HNF1β and Derlin-1. We found that circ-TTBK2 was upregulated in glioma tissues and cell lines, while linear TTBK2 was not dysregulated in glioma tissues and cells. Enhanced expression of circ-TTBK2 promoted cell proliferation, migration, and invasion, while inhibited apoptosis. MiR-217 was downregulated in glioma tissues and cell lines. We also found that circ-TTBK2, but not linear TTBK2, acted as miR-217 sponge in a sequence-specific manner. In addition, upregulated circ-TTBK2 decreased miR-217 expression and there was a reciprocal negative feedback between them in an Argonaute2-dependent manner. Moreover, reintroduction of miR-217 significantly reversed circ-TTBK2-mediated promotion of glioma progression. HNF1β was a direct target of miR-217, and played oncogenic role in glioma cells. Remarkably, circ-TTBK2 knockdown combined with miR-217 overexpression led to tumor regression in vivo. These results demonstrated a novel role circ-TTBK2 in the glioma progression.

Circular RNA profiles in mouse lung tissue induced by radon.

PubMed

Pei, Weiwei; Tao, Lijing; Zhang, Leshuai W; Zhang, Shuyu; Cao, Jianping; Jiao, Yang; Tong, Jian; Nie, Jihua

2017-04-07

Radon is a known human lung carcinogen, whose underlying carcinogenic mechanism remains unclear. Recently, circular RNA (circRNA), a class of endogenous non-protein coding RNAs that contain a circular loop, was found to exhibit multiple biological effects. In this study, circRNA profiles in mouse lung tissues between control and radon exposure were analyzed. Six mice were exposed to radon at concentration of 100,000 Bq/m 3 , 12 h/d, for up to cumulative doses of 60 working level months (WLM). H&E staining and immunohistochemistry of caspase-3 were used to detect the damages in lung tissue. The lung tissue of control and exposed group were selected for circRNA microarray study. The circRNA/microRNA interaction was analyzed by starBase prediction software. 5 highest expressing circRNAs were selected by real-time PCR to validate the consistency in mouse lung tissue exposed to radon. Inflammatory reaction was found in mouse lung tissue exposed to radon, and caspase-3 expression was significantly increased. Microarray screening revealed 107 up-regulated and 83 down-regulated circRNAs, among which top 30 circRNAs with the highest fold changes were chosen for further analysis, with 5 microRNAs binding sites listed for each circRNA. Consistency of the top 5 circRNAs with the highest expressions were confirmed in mice exposed with 60WLM of radon. Mouse lung tissue was severely injured when exposed to radon through pathological diagnosis and immunohistochemical analysis. A series of differentially expressed circRNAs demonstrated that they may play an important role in pulmonary toxicity induced by radon.

Identification of the tumor‑suppressive function of circular RNA FOXO3 in non‑small cell lung cancer through sponging miR‑155.

PubMed

Zhang, Yanni; Zhao, Hui; Zhang, Lichuan

2018-06-01

Circular RNAs (circRNAs) are a class of endo-genous noncoding RNAs that have been demonstrated to be potential regulators in the development and progression of various types of human cancer. However, little is known about their roles in cancer initiation and progression, particular in non‑small cell lung cancer (NSCLC). In the present study, the expression level of circRNA‑forkhead box O3 class (FOXO3) in NSCLC specimens was determined and its functional role was investigated in NSCLC cells. By performing Taq‑man based RT‑qPCR, it was identified that circRNA‑FOXO3 was downregulated in NSCLC tissues and cell lines. Receiver operating curve analysis indicated that circRNA‑FOXO3 had a relatively higher diagnostic accuracy. The functional relevance was further examined by biological assays. circRNA‑FOXO3 significantly promoted the ability of cell proliferation, migration and invasion of NSCLC cells. The linear isomer of circRNA‑FOXO3, FOXO3 gene, was identified as a downstream target. RNA immunoprecipitation indicated that circRNA‑FOXO3 sequestering miR‑155, which further promoted linear FOXO3 expression. In addition, gain and loss functional assays indicated that circRNA‑FOXO3 served an anti‑oncogenic role through sequestering miR‑155 and enhancing FOXO3 expression. These results suggest that circRNA‑FOXO3 is a tumor‑suppressor in NSCLC and may serve as a promising therapeutic target. Therefore, restoration of circRNA‑FOXO3 expression could be a future approach to develop a novel treatment strategy.

Androgen receptor (AR) promotes clear cell renal cell carcinoma (ccRCC) migration and invasion via altering the circHIAT1/miR-195-5p/29a-3p/29c-3p/CDC42 signals.

PubMed

Wang, Kefeng; Sun, Yin; Tao, Wei; Fei, Xiang; Chang, Chawnshang

2017-05-28

Increasing evidence has demonstrated that the androgen receptor (AR) plays important roles to promote the metastasis of clear cell renal cell carcinoma (ccRCC). The detailed mechanisms, especially how AR functions via altering the circular RNAs (circRNAs) remain unclear. Here we identified a new circRNA (named as circHIAT1) whose expression was lower in ccRCCs than adjacent normal tissues. Targeting AR could suppress ccRCC cell progression via increasing circHIAT1 expression. ChIP assay and luciferase assay demonstrated that AR suppressed circHIAT1 expression via regulating its host gene, Hippocampus Abundant Transcript 1 (HIAT1) expression at the transcriptional level. The consequences of AR-suppressed circHIAT1 resulted in deregulating miR-195-5p/29a-3p/29c-3p expressions, which increased CDC42 expression to enhance ccRCC cell migration and invasion. Increasing this newly identified signal via circHIAT1 suppressed AR-enhanced ccRCC cell migration and invasion. Together, these results suggested that circHIAT1 functioned as a metastatic inhibitor to suppress AR-enhanced ccRCC cell migration and invasion. Targeting this newly identified AR-circHIAT1-mediated miR-195-5p/29a-3p/29c-3p/CDC42 signals may help us develop potential new therapies to better suppress ccRCC metastasis. Copyright © 2017 Elsevier B.V. All rights reserved.

High-purity circular RNA isolation method (RPAD) reveals vast collection of intronic circRNAs.

PubMed

Panda, Amaresh C; De, Supriyo; Grammatikakis, Ioannis; Munk, Rachel; Yang, Xiaoling; Piao, Yulan; Dudekula, Dawood B; Abdelmohsen, Kotb; Gorospe, Myriam

2017-07-07

High-throughput RNA sequencing methods coupled with specialized bioinformatic analyses have recently uncovered tens of thousands of unique circular (circ)RNAs, but their complete sequences, genes of origin and functions are largely unknown. Given that circRNAs lack free ends and are thus relatively stable, their association with microRNAs (miRNAs) and RNA-binding proteins (RBPs) can influence gene expression programs. While exoribonuclease treatment is widely used to degrade linear RNAs and enrich circRNAs in RNA samples, it does not efficiently eliminate all linear RNAs. Here, we describe a novel method for the isolation of highly pure circRNA populations involving RNase R treatment followed by Polyadenylation and poly(A)+ RNA Depletion (RPAD), which removes linear RNA to near completion. High-throughput sequencing of RNA prepared using RPAD from human cervical carcinoma HeLa cells and mouse C2C12 myoblasts led to two surprising discoveries: (i) many exonic circRNA (EcircRNA) isoforms share an identical backsplice sequence but have different body sizes and sequences, and (ii) thousands of novel intronic circular RNAs (IcircRNAs) are expressed in cells. In sum, isolating high-purity circRNAs using the RPAD method can enable quantitative and qualitative analyses of circRNA types and sequence composition, paving the way for the elucidation of circRNA functions. Published by Oxford University Press on behalf of Nucleic Acids Research 2017.

The circRNA interactome–innovative hallmarks of the intra- and extracellular radiation response

PubMed Central

O'Leary, Valerie Bríd; Smida, Jan; Matjanovski, Martina; Brockhaus, Corinna; Winkler, Klaudia; Moertl, Simone; Ovsepian, Saak Victor; Atkinson, Michael John

2017-01-01

Generated by Quaking (QKI), circular RNAs (circRNAs) are newly recognised non-coding RNA (ncRNA) members characterised by tissue specificity, increased stability and enrichment within exosomes. Studies have shown that ionizing radiation (IR) can influence ncRNA transcription. However, it is unknown whether circRNAs or indeed QKI are regulated by IR. Microarray circRNA profiling and next generation sequencing revealed that circRNA expression was altered by low and medium dose exposure sourced predominantly from genes influencing the p53 pathway. CircRNAs KIRKOS-71 and KIRKOS-73 transcribed from the WWOX (WW Domain Containing Oxidoreductase) tumor suppressor (a p53 regulator) responded within hours to IR. KIRKOS-71 and KIRKOS-73 were present in exosomes yet exhibited differential transcript clearance between irradiated cell lines. Dual-quasar labelled probes and in-situ hybridization demonstrated the intercellular distribution of KIRKOS-71 and KIRKOS-73 predominantly within the perinucleus. QKI knockdown removed nuclear expression of these circRNAs with no significant effect on cytosolic KIRKOS-71 and KIRKOS-73. Distinct QKI transcription between cell lines and its augmented interaction with KIRKOS-71 and KIRKOS-73 was noted post IR. This foremost study provides evidence that QKI and circRNAs partake in the cellular irradiation response. KIRKOS-71 and KIRKOS-73 as stable secreted circRNAs may afford vital characteristics worth syphoning as promising diagnostic radiotherapy biomarkers. PMID:29108237

High-purity circular RNA isolation method (RPAD) reveals vast collection of intronic circRNAs

PubMed Central

De, Supriyo; Grammatikakis, Ioannis; Munk, Rachel; Yang, Xiaoling; Piao, Yulan; Dudekula, Dawood B.; Gorospe, Myriam

2017-01-01

Abstract High-throughput RNA sequencing methods coupled with specialized bioinformatic analyses have recently uncovered tens of thousands of unique circular (circ)RNAs, but their complete sequences, genes of origin and functions are largely unknown. Given that circRNAs lack free ends and are thus relatively stable, their association with microRNAs (miRNAs) and RNA-binding proteins (RBPs) can influence gene expression programs. While exoribonuclease treatment is widely used to degrade linear RNAs and enrich circRNAs in RNA samples, it does not efficiently eliminate all linear RNAs. Here, we describe a novel method for the isolation of highly pure circRNA populations involving RNase R treatment followed by Polyadenylation and poly(A)+ RNA Depletion (RPAD), which removes linear RNA to near completion. High-throughput sequencing of RNA prepared using RPAD from human cervical carcinoma HeLa cells and mouse C2C12 myoblasts led to two surprising discoveries: (i) many exonic circRNA (EcircRNA) isoforms share an identical backsplice sequence but have different body sizes and sequences, and (ii) thousands of novel intronic circular RNAs (IcircRNAs) are expressed in cells. In sum, isolating high-purity circRNAs using the RPAD method can enable quantitative and qualitative analyses of circRNA types and sequence composition, paving the way for the elucidation of circRNA functions. PMID:28444238

Breast Cancer Chemotherapy and Your Heart

MedlinePlus

... Circ: Cardiovascular Imaging → Circ: Cardiovascular Interventions → Circ: Cardiovascular Quality & ... published June 23, 2014 Christine Unitt From the Cardio-Oncology Program (C.U., K.M., J.M.) and ...

Novel insight into circular RNA HECTD1 in astrocyte activation via autophagy by targeting MIR142-TIPARP: Implications for cerebral ischemic stroke.

PubMed

Han, Bing; Zhang, Yuan; Zhang, Yanhong; Bai, Ying; Chen, Xufeng; Huang, Rongrong; Wu, Fangfang; Leng, Shuo; Chao, Jie; Zhang, John H; Hu, Gang; Yao, Honghong

2018-06-25

Circular RNAs (circRNAs) are highly expressed in the central nervous system and are involved in the regulation of physiological and pathophysiological processes. However, the potential role of circRNAs in stroke remains largely unknown. Here, using a circRNA microarray, we showed that circular RNA Hectd1 (circHectd1) levels were significantly increased in ischemic brain tissues in transient middle cerebral artery occlusion (tMCAO) mouse stroke models and further validated this finding in plasma samples from acute ischemic stroke (AIS) patients. Knockdown of circHectd1 expression significantly decreased infarct areas, attenuated neuronal deficits, and ameliorated astrocyte activation in tMCAO mice. Mechanistically, circHECTD1 functions as an endogenous MIR142 (microRNA 142) sponge to inhibit MIR142 activity, resulting in the inhibition of TIPARP (TCDD inducible poly[ADP-ribose] polymerase) expression with subsequent inhibition of astrocyte activation via macroautophagy/autophagy. Taken together, the results of our study indicate that circHECTD1 and its coupling mechanism are involved in cerebral ischemia, thus providing translational evidence that circHECTD1 can serve as a novel biomarker of and therapeutic target for stroke.

Increased circular RNA hsa_circ_0012673 acts as a sponge of miR-22 to promote lung adenocarcinoma proliferation.

PubMed

Wang, Xiyong; Zhu, Xiaoli; Zhang, Hongming; Wei, Shuzhen; Chen, Yan; Chen, Yang; Wang, Fei; Fan, Xiaobo; Han, Shuhua; Wu, Guoqiu

2018-02-19

Recent reports have indicated that circular RNA (circRNA) may regulate Lung adenocarcinoma (LAC) development. Our previous studies showed that hsa_circ_0012673 was up-regulated in a circRNA microarray. However, its expression level in LAC has not been verified, and the underlying molecular mechanisms in LAC are unknown. In this study, we found that the expression of hsa_circ_0012673 was up-regulated in LAC tissues compared to pair-matched adjacent non-tumor tissues (P = 0.0079), and that the expression level was associated with tumour size (P = 0.015). Furthermore, hsa_circ_0012673 was primarily localized in the cytoplasm and promoted cell proliferation of LAC cells by sponging miR-22, which targeted erb-b2 receptor tyrosine kinase 3 (ErbB3) in LAC. Hsa_circ_0012673 promotes LAC proliferation by suppressing miR-22, which targets ErbB3. Copyright © 2018 Elsevier Inc. All rights reserved.

Circular RNA: a new star in neurological diseases.

PubMed

Li, Tao-Ran; Jia, Yan-Jie; Wang, Qun; Shao, Xiao-Qiu; Lv, Rui-Juan

2017-08-01

Circular RNAs (circRNAs) are novel endogenous non-coding RNAs characterized by the presence of a covalent bond linking the 3' and 5' ends generated by backsplicing. In this review, we summarize a number of the latest theories regarding the biogenesis, properties and functions of circRNAs. Specifically, we focus on the advancing characteristics and functions of circRNAs in the brain and neurological diseases. CircRNAs exhibit the characteristics of species conservation, abundance and tissue/developmental-stage-specific expression in the brain. We also describe the relationship between circRNAs and several neurological diseases and highlight their functions in neurological diseases.

Re-analysis of long non-coding RNAs and prediction of circRNAs reveal their novel roles in susceptible tomato following TYLCV infection.

PubMed

Wang, Jinyan; Yang, Yuwen; Jin, Lamei; Ling, Xitie; Liu, Tingli; Chen, Tianzi; Ji, Yinghua; Yu, Wengui; Zhang, Baolong

2018-06-04

Long Noncoding-RNAs (LncRNAs) are known to be involved in some biological processes, but their roles in plant-virus interactions remain largely unexplored. While circular RNAs (circRNAs) have been studied in animals, there has yet to be extensive research on them in a plant system, especially in tomato-tomato yellow leaf curl virus (TYLCV) interaction. In this study, RNA transcripts from the susceptible tomato line JS-CT-9210 either infected with TYLCV or untreated, were sequenced in a pair-end strand-specific manner using ribo-zero rRNA removal library method. A total of 2056 lncRNAs including 1767 long intergenic non-coding RNA (lincRNAs) and 289 long non-coding natural antisense transcripts (lncNATs) were obtained. The expression patterns in lncRNAs were similar in susceptible tomato plants between control check (CK) and TYLCV infected samples. Our analysis suggested that lncRNAs likely played a role in a variety of functions, including plant hormone signaling, protein processing in the endoplasmic reticulum, RNA transport, ribosome function, photosynthesis, glulathione metabolism, and plant-pathogen interactions. Using virus-induced gene silencing (VIGS) analysis, we found that reduced expression of the lncRNA S-slylnc0957 resulted in enhanced resistance to TYLCV in susceptible tomato plants. Moreover, we identified 184 circRNAs candidates using the CircRNA Identifier (CIRI) software, of which 32 circRNAs were specifically expressed in untreated samples and 83 circRNAs in TYLCV samples. Approximately 62% of these circRNAs were derived from exons. We validated the circRNAs by both PCR and Sanger sequencing using divergent primers, and found that most of circRNAs were derived from the exons of protein coding genes. The silencing of these circRNAs parent genes resulted in decreased TYLCV virus accumulation. In this study, we identified novel lncRNAs and circRNAs using bioinformatic approaches and showed that these RNAs function as negative regulators of TYLCV infection. Moreover, the expression patterns of lncRNAs in susceptible tomato plants were different from that of resistant tomato plants, while exonic circRNAs expression positively associated with their respective protein coding genes. This work provides a foundation for elaborating the novel roles of lncRNAs and circRNAs in susceptible tomatoes following TYLCV infection.

Advances in bioartificial liver assist devices.

PubMed

Patzer, J F

2001-11-01

Rapid advances in development of bioartificial liver assist devices (BLADs) are exciting clinical interest in the application of BLAD technology for support of patients with acute liver failure. Four devices (Circe Biomedical HepatAssist, Vitagen ELAD, Gerlach BELS, and Excorp Medical BLSS) that rely on hepatocytes cultured in hollow-fiber membrane technology are currently in various stages of clinical evaluation. Several alternative approaches for culture and perfusion of hepatocytes have been evaluated in preclinical, large animal models of liver failure, or at a laboratory scale. Engineering design issues with respect to xenotransplantation, BLAD perfusion, hepatocyte functionality and culture maintenance, and ultimate distribution of a BLAD to a clinical site are delineated.

Hsa_circ_0054633 in peripheral blood can be used as a diagnostic biomarker of pre-diabetes and type 2 diabetes mellitus.

PubMed

Zhao, Zhenzhou; Li, Xuejie; Jian, Dongdong; Hao, Peiyuan; Rao, Lixin; Li, Muwei

2017-03-01

The purpose of the current study was to investigate the characteristic expression of circular RNAs (circRNAs) in the peripheral blood of type 2 diabetes mellitus (T2DM) patients and their potential as diagnostic biomarkers for pre-diabetes and T2DM. CircRNAs in the peripheral blood from six healthy individuals and six T2DM patients were collected for microarray analysis, and an independent cohort study consisting of 20 normal cases, 20 pre-diabetes patients and 20 T2DM patients was conducted to verify the five chosen circRNAs. We then tested hsa_circ_0054633 in a third cohort (control group, n = 60; pre-diabetes group, n = 63; and T2DM group, n = 64) by quantitative real-time polymerase chain reaction (Q-PCR). In total, 489 circRNAs were discovered to be differentially expressed between the two groups, and of these, 78 were upregulated and 411 were downregulated in the T2DM group. Five circRNAs were then selected as candidate biomarkers and further verified in a second cohort. Hsa_circ_0054633 was found to have the largest area under the curve (AUC). The diagnostic capacity of hsa_circ_0054633 was tested in a third cohort. After introducing the risk factors of T2DM, the hsa_circ_0054633 AUCs for the diagnosis of pre-diabetes and T2DM slightly increased from 0.751 (95% confidence interval [0.666-0.835], P < 0.001) to 0.841 ([0.773-0.910], P < 0.001) and from 0.793 ([0.716-0.871], P < 0.001) to 0.834 ([0.762-0.905], P < 0.001), respectively. Hsa_circ_0054633 presented a certain diagnostic capability for pre-diabetes and T2DM.

Circular RNA expression alterations are involved in OGD/R-induced neuron injury.

PubMed

Lin, Shao-Peng; Ye, Shan; Long, Youming; Fan, Yongxiang; Mao, Hai-Feng; Chen, Mei-Ting; Ma, Qiu-Jie

2016-02-26

Cerebral ischemia-reperfusion injury (IRI) is a common clinical pathological process, and it is a key step in causing further ischemic organ damage. The mechanism of cerebral IRI is still not fully understood, leading to a lack of effective treatment. It has been demonstrated that circular RNAs (circRNAs) can act as miRNA sponges and play an important role in regulating gene expression through a circRNA-miRNA-gene pathway. The specific role of circRNAs in the pathogenesis of cerebral IRI, however, is still unclear. Thus, in the present study, we investigated circRNA expression differences in HT22 cells with oxygen-glucose deprivation/reoxygenation (OGD/R) versus normal controls. The results from circRNA microarrays revealed that 15 circRNAs were significantly altered in the OGD/R model (p < 0.05) compared with the control group. Among them, 3 were significantly up-regulated, and the other 12 were down-regulated. Furthermore, the up-regulated expression of mmu-circRNA-015947 was verified using quantitative real-time polymerase chain reaction (qRT-PCR). Bioinformatics analysis revealed that up-regulated expression of mmu-circRNA-015947 could interact with miRNAs (mmu-miR-188-3p, mmu-miR-329-5p, mmu-miR-3057-3p, mmu-miR-5098 and mmu-miR-683) and thereby enhance target gene expression. KEGG pathway analysis predicted that mmu-circRNA-015947 may participate in apoptosis-related, metabolism-related and immune-related pathways, which are known to be involved in the pathogenesis of IRI. This research suggests that the overlapping expression of mmu-circRNA-015947 might be involved in the process of cerebral IRI and presents a novel molecular target for clinical therapy. Copyright © 2016 Elsevier Inc. All rights reserved.

Hsa_circ_0001649: A circular RNA and potential novel biomarker for colorectal cancer.

PubMed

Ji, Wenxin; Qiu, Chunli; Wang, Mao; Mao, Ning; Wu, Shaofeng; Dai, Yinhai

2018-02-26

The circRNAs are differentially expressed in a wide range of cancers in regulating their initiation and progression, and could be used to make a diagnosis for some diseases like tumor as a new biomarker. However, the correlation and the mechanism of action between circRNAs and colorectal cancer (CRC) are still unclear. In this study, by using qRT-PCRs, we detected the expression level of hsa_circ_0001649 in tissue and serum samples from CRC patients, and the cultured cell has been detected. We found that the hsa_circ_0001649 in CRC is significantly lower than the expression level of correspondent nontumorous tissues (n = 64, P < 0.01). We also tested the HCT116 cell lines, and the similar result is observed (n = 15, P < 0.01). Moreover, we detected the serum samples obtained before and after surgery, showing significantly the expression level of hsa_circ_0001649 in the same patient is up-regulated after surgery (n = 18, P < 0.01). Besides, we analyzed the correlation between clinicopathological date and the expression level of hsa_circ_0001649, we found that hsa_circ_0001649 expression level is closely associated with pathological differentiation (P = 0.037), and the result also illustrated that the expression level of hsa_circ_0001649 is no direct correlation with age, gender, TMN stage, lymphatic metastasis, CEA, CA19-9, and CA-724 levels. The area under the receiver operating characteristic (ROC) curve was 0.857. In conclusion, this study showed that the expression level of hsa_circ_0001649 was down-regulated in CRC and could use it as a new biomarker for specific and sensitive inspection of CRC. Copyright © 2018 Elsevier Inc. All rights reserved.

Evidence for Low Black Hole Spin and Physically Motivated Accretion Models from Millimeter-VLBI Observations of Sagittarius A*

NASA Astrophysics Data System (ADS)

Broderick, Avery E.; Fish, Vincent L.; Doeleman, Sheperd S.; Loeb, Abraham

2011-07-01

Millimeter very long baseline interferometry (mm-VLBI) provides the novel capacity to probe the emission region of a handful of supermassive black holes on sub-horizon scales. For Sagittarius A* (Sgr A*), the supermassive black hole at the center of the Milky Way, this provides access to the region in the immediate vicinity of the horizon. Broderick et al. have already shown that by leveraging spectral and polarization information as well as accretion theory, it is possible to extract accretion-model parameters (including black hole spin) from mm-VLBI experiments containing only a handful of telescopes. Here we repeat this analysis with the most recent mm-VLBI data, considering a class of aligned, radiatively inefficient accretion flow (RIAF) models. We find that the combined data set rules out symmetric models for Sgr A*'s flux distribution at the 3.9σ level, strongly favoring length-to-width ratios of roughly 2.4:1. More importantly, we find that physically motivated accretion flow models provide a significantly better fit to the mm-VLBI observations than phenomenological models, at the 2.9σ level. This implies that not only is mm-VLBI presently capable of distinguishing between potential physical models for Sgr A*'s emission, but further that it is sensitive to the strong gravitational lensing associated with the propagation of photons near the black hole. Based upon this analysis we find that the most probable magnitude, viewing angle, and position angle for the black hole spin are a = 0.0+0.64 + 0.86, \\theta ={68^\\circ }^{+5^\\circ +9^\\circ }_{-20^\\circ -28^\\circ }, and \\xi ={-52^\\circ }^{+17^\\circ +33^\\circ }_{-15^\\circ -24^\\circ } east of north, where the errors quoted are the 1σ and 2σ uncertainties.

Circular RNA Signature Predicts Gemcitabine Resistance of Pancreatic Ductal Adenocarcinoma.

PubMed

Shao, Feng; Huang, Mei; Meng, Futao; Huang, Qiang

2018-01-01

Gemcitabine resistance is currently the main problem of chemotherapy for advanced pancreatic cancer patients. The resistance is thought to be caused by altered drug metabolism or reduced apoptosis of cancer cells. However, the underlying mechanism of Gemcitabine resistance in pancreatic cancer remains unclear. In this study, we established Gemcitabine resistant PANC-1 (PANC-1-GR) cell lines and compared the circular RNAs (circRNAs) profiles between PANC-1 cells and PANC-1-GR cells by RNA sequencing. Differentially expressed circRNAs were demonstrated using scatter plot and cluster heatmap analysis. Gene ontology and pathway analysis were performed to systemically map the genes which are functionally associated to those differentially expressed circRNAs identified from our data. The expression of the differentially expressed circRNAs picked up by RNAseq in PANC-1-GR cells was further validated by qRT-PCR and two circRNAs were eventually identified as the most distinct targets. Consistently, by analyzing plasma samples form pancreatic ductal adenocarcinoma (PDAC) patients, the two circRNAs showed more significant expression in the Gemcitabine non-responsive patients than the responsive ones. In addition, we found that silencing of the two circRNAs could restore the sensitivity of PANC-1-GR cells to Gemcitabine treatment, while over-expression of them could increase the resistance of normal PANC-1 and MIA PACA-2 cells, suggesting that they might serve as drug targets for Gemcitabine resistance. Furthermore, the miRNA interaction networks were also explored based on the correlation analysis of the target microRNAs of these two circRNAs. In conclusion, we successfully established new PANC-1-GR cells, systemically characterized the circRNA and miRNA profiles, and identified two circRNAs as novel biomarkers and potential therapeutic targets for Gemcitabine non-responsive PDAC patients.

Circular RNAs in Cancer – Lessons Learned From microRNAs

PubMed Central

Dragomir, Mihnea; Calin, George A.

2018-01-01

Circular RNAs (circRNA) are RNA molecules built from fragments of linear pre-messenger RNAs and other linear RNA species through a process termed “back-splicing” in which the 3′ and 5′ ends are joined together giving rise to a covalently uninterrupted loop. circRNAs are not new members of the RNA world; they were first discovered in the early 1990s. The novelty is their abundance in the mammalian cells, as recently thousands of circRNAs were discovered and annotated. The biogenesis of circRNAs is a partially characterized process, regulated by three different mechanisms: exon skipping, intron pairing, and RNA-binding proteins. On the other hand, the function of circRNAs remains largely unknown and only a handful of singular reports describe in detail the biological roles of some circular transcripts. In a very short period of time, numerous circRNAs were associated with various cancer types and were also identified in bodily fluids with the potential of being disease-specific biomarkers. In this review, we briefly describe the biogenesis and function of circRNAs and present the circular transcripts that were more than once reported in literature to be associated with cancer. Finally, we point out some of the difficulties encountered in the study of circRNAs in cancer, as we consider that taking these into account could accelerate and improve our understanding of the biologic and translational use of circRNAs in human diseases. PMID:29911069

Identification of circular RNA in the Bombyx mori silk gland.

PubMed

Gan, Huaiyan; Feng, Tieshan; Wu, Yuqian; Liu, Chun; Xia, Qingyou; Cheng, Tingcai

2017-10-01

Bombyx mori is an economically important holometabolous lepidopteran insect. In B. mori endogenous noncoding RNAs such as microRNAs (miRNAs) and Piwi-interacting RNAs play crucial biological functions in metamorphosis and sex determination. In addition, circular RNAs (circRNAs) have been recently identified as noncoding RNAs in most common model organisms and show potential as gene regulators. However, to date, there have been few studies on the circRNAs present in the B. mori genome conducted to date. Here, we identified 3916 circRNAs by deep circular transcriptome sequencing using the silk gland of B. mori. 3155 circRNAs were found to be derived from 1727 parental genes. The circRNAs displayed tissue-specific expression between the middle silk gland (MSG) and posterior silk gland (PSG), with 2532 and 880 being upregulated circRNAs in the MSG and PSG, respectively. Gene Ontology and Kyoto Encyclopedia of Genes and Genomes pathway analyses showed that the parental genes from the MSG and PSG were generally annotated to similar categories and pathways. The interaction network of circRNAs and miRNAs showed that circRNAs might act as miRNA sponges or interact with miRNAs in some other way. Overall, the results revealed the complicated patterns of circRNAs in the B. mori silk gland providing a new angle from which to explore the mechanisms of complex gene regulation and efficient silk protein synthesis. Copyright © 2017 Elsevier Ltd. All rights reserved.

circRNA Mediates Silica-Induced Macrophage Activation Via HECTD1/ZC3H12A-Dependent Ubiquitination

PubMed Central

Zhou, Zewei; Jiang, Rong; Yang, Xiyue; Guo, Huifang; Fang, Shencun; Zhang, Yingming; Cheng, Yusi; Wang, Jing; Yao, Honghong; Chao, Jie

2018-01-01

Rationale: Phagocytosis of silicon dioxide (SiO2) into lung cells causes an inflammatory cascade that results in fibroblast proliferation and migration, followed by fibrosis. Circular RNAs (circRNAs) are a subclass of non-coding RNAs detected within mammalian cells; however, researchers have not determined whether circRNAs are involved in the pathophysiological process of silicosis. The upstream molecular mechanisms and functional effects on cell apoptosis, proliferation and migration were investigated to elucidate the role of circRNAs in SiO2-induced inflammation in pulmonary macrophages. Methods: Primary cultures of alveolar macrophages from healthy donors and patients as well as the RAW264.7 macrophage cell line were used to explore the functions of circHECTD1 (HECT domain E3 ubiquitin protein ligase 1) in macrophage activation. Results: The results of the experiments indicated that 1) SiO2 concomitantly decreased circHECTD1 levels and increased HECTD1 protein expression; 2) circHECTD1 and HECTD1 were involved in SiO2-induced macrophage activation via ubiquitination; and 3) SiO2-activated macrophages promoted fibroblast proliferation and migration via the circHECTD1/HECTD1 pathway. Tissue samples from silicosis patients confirmed the upregulation of HECTD1. Conclusions: Our study elucidated a link between SiO2-induced macrophage activation and the circHECTD1/HECTD1 pathway, thereby providing new insight into the potential use of HECTD1 in the development of novel therapeutic strategies for treating silicosis. PMID:29290828

circRNA Mediates Silica-Induced Macrophage Activation Via HECTD1/ZC3H12A-Dependent Ubiquitination.

PubMed

Zhou, Zewei; Jiang, Rong; Yang, Xiyue; Guo, Huifang; Fang, Shencun; Zhang, Yingming; Cheng, Yusi; Wang, Jing; Yao, Honghong; Chao, Jie

2018-01-01

Rationale: Phagocytosis of silicon dioxide (SiO 2 ) into lung cells causes an inflammatory cascade that results in fibroblast proliferation and migration, followed by fibrosis. Circular RNAs (circRNAs) are a subclass of non-coding RNAs detected within mammalian cells; however, researchers have not determined whether circRNAs are involved in the pathophysiological process of silicosis. The upstream molecular mechanisms and functional effects on cell apoptosis, proliferation and migration were investigated to elucidate the role of circRNAs in SiO 2 -induced inflammation in pulmonary macrophages. Methods: Primary cultures of alveolar macrophages from healthy donors and patients as well as the RAW264.7 macrophage cell line were used to explore the functions of circHECTD1 (HECT domain E3 ubiquitin protein ligase 1) in macrophage activation. Results: The results of the experiments indicated that 1) SiO 2 concomitantly decreased circHECTD1 levels and increased HECTD1 protein expression; 2) circHECTD1 and HECTD1 were involved in SiO 2 -induced macrophage activation via ubiquitination; and 3) SiO 2 -activated macrophages promoted fibroblast proliferation and migration via the circHECTD1/HECTD1 pathway. Tissue samples from silicosis patients confirmed the upregulation of HECTD1. Conclusions: Our study elucidated a link between SiO 2 -induced macrophage activation and the circHECTD1/HECTD1 pathway, thereby providing new insight into the potential use of HECTD1 in the development of novel therapeutic strategies for treating silicosis.

Induction of tumor apoptosis through a circular RNA enhancing Foxo3 activity.

PubMed

Du, William W; Fang, Ling; Yang, Weining; Wu, Nan; Awan, Faryal Mehwish; Yang, Zhenguo; Yang, Burton B

2017-02-01

Circular RNAs are a class of non-coding RNAs that are receiving extensive attention. Despite reports showing circular RNAs acting as microRNA sponges, the biological functions of circular RNAs remain largely unknown. We show that in patient tumor samples and in a panel of cancer cells, circ-Foxo3 was minimally expressed. Interestingly, during cancer cell apoptosis, the expression of circ-Foxo3 was found to be significantly increased. We found that silencing endogenous circ-Foxo3 enhanced cell viability, whereas ectopic expression of circ-Foxo3 triggered stress-induced apoptosis and inhibited the growth of tumor xenografts. Also, expression of circ-Foxo3 increased Foxo3 protein levels but repressed p53 levels. By binding to both, circ-Foxo3 promoted MDM2-induced p53 ubiquitination and subsequent degradation, resulting in an overall decrease of p53. With low binding affinity to Foxo3 protein, circ-Foxo3 prevented MDM2 from inducing Foxo3 ubiquitination and degradation, resulting in increased levels of Foxo3 protein. As a result, cell apoptosis was induced by upregulation of the Foxo3 downstream target PUMA.

Circ-ZNF609 Is a Circular RNA that Can Be Translated and Functions in Myogenesis.

PubMed

Legnini, Ivano; Di Timoteo, Gaia; Rossi, Francesca; Morlando, Mariangela; Briganti, Francesca; Sthandier, Olga; Fatica, Alessandro; Santini, Tiziana; Andronache, Adrian; Wade, Mark; Laneve, Pietro; Rajewsky, Nikolaus; Bozzoni, Irene

2017-04-06

Circular RNAs (circRNAs) constitute a family of transcripts with unique structures and still largely unknown functions. Their biogenesis, which proceeds via a back-splicing reaction, is fairly well characterized, whereas their role in the modulation of physiologically relevant processes is still unclear. Here we performed expression profiling of circRNAs during in vitro differentiation of murine and human myoblasts, and we identified conserved species regulated in myogenesis and altered in Duchenne muscular dystrophy. A high-content functional genomic screen allowed the study of their functional role in muscle differentiation. One of them, circ-ZNF609, resulted in specifically controlling myoblast proliferation. Circ-ZNF609 contains an open reading frame spanning from the start codon, in common with the linear transcript, and terminating at an in-frame STOP codon, created upon circularization. Circ-ZNF609 is associated with heavy polysomes, and it is translated into a protein in a splicing-dependent and cap-independent manner, providing an example of a protein-coding circRNA in eukaryotes. Copyright © 2017 The Authors. Published by Elsevier Inc. All rights reserved.

Development of the compact infrared camera (CIRC) for Earth observation

NASA Astrophysics Data System (ADS)

Naitoh, Masataka; Katayama, Haruyoshi; Harada, Masatomo; Nakamura, Ryoko; Kato, Eri; Tange, Yoshio; Sato, Ryota; Nakau, Koji

2017-11-01

The Compact Infrared Camera (CIRC) is an instrument equipped with an uncooled infrared array detector (microbolometer). We adopted the microbolometer, because it does not require a cooling system such as a mechanical cooler, and athermal optics, which does not require an active thermal control of optics. This can reduce the size, cost, and electrical power consumption of the sensor. The main mission of the CIRC is to demonstrate the technology for detecting wildfire, which are major and chronic disasters affecting many countries in the Asia-Pacific region. It is possible to increase observational frequency of wildfires, if CIRCs are carried on a various satellites by taking advantages of small size and light weight. We have developed two CIRCs. The first will be launched in JFY 2013 onboard Advanced Land Observing Satellite-2 (ALOS- 2), and the second will be launched in JFY 2014 onboard CALorimetric Electron Telescope (CALET) of the Japanese Experiment Module (JEM) at the International Space Station(ISS). We have finished the ground Calibration of the first CIRC onboard ALOS-2. In this paper, we provide an overview of the CIRC and its results of ground calibration.

Circular RNA Expression: Its Potential Regulation and Function.

PubMed

Salzman, Julia

2016-05-01

In 2012, a new feature of eukaryotic gene expression emerged: ubiquitous expression of circular RNA (circRNA) from genes traditionally thought to express messenger or linear noncoding (nc)RNA only. CircRNAs are covalently closed, circular RNA molecules that typically comprise exonic sequences and are spliced at canonical splice sites. This feature of gene expression was first recognized in humans and mouse, but it quickly emerged that it was common across essentially all eukaryotes studied by molecular biologists. CircRNA abundance, and even which alternatively spliced circRNA isoforms are expressed, varies by cell type and can exceed the abundance of the traditional linear mRNA or ncRNA transcript. CircRNAs are enriched in the brain and increase in abundance during fetal development. Together, these features raise fundamental questions regarding the regulation of circRNA in cis and in trans, and its function. Copyright © 2016. Published by Elsevier Ltd.

FUCHS-towards full circular RNA characterization using RNAseq.

PubMed

Metge, Franziska; Czaja-Hasse, Lisa F; Reinhardt, Richard; Dieterich, Chistoph

2017-01-01

Circular RNAs (circRNAs) belong to a recently re-discovered species of RNA that emerge during RNA maturation through a process called back-splicing. A downstream 5' splice site is linked to an upstream 3' splice site to form a circular transcript instead of a canonical linear transcript. Recent advances in next-generation sequencing (NGS) have brought circRNAs back into the focus of many scientists. Since then, several studies reported that circRNAs are differentially expressed across tissue types and developmental stages, implying that they are actively regulated and not merely a by-product of splicing. Though functional studies have shown that some circRNAs could act as miRNA-sponges, the function of most circRNAs remains unknown. To expand our understanding of possible roles of circular RNAs, we propose a new pipeline that could fully characterizes candidate circRNA structure from RNAseq data-FUCHS: FU ll CH aracterization of circular RNA using RNA- S equencing. Currently, most computational prediction pipelines use back-spliced reads to identify circular RNAs. FUCHS extends this concept by considering all RNA-seq information from long reads (typically >150 bp) to learn more about the exon coverage, the number of double break point fragments, the different circular isoforms arising from one host-gene, and the alternatively spliced exons within the same circRNA boundaries. This new knowledge will enable the user to carry out differential motif enrichment and miRNA seed analysis to determine potential regulators during circRNA biogenesis. FUCHS is an easy-to-use Python based pipeline that contributes a new aspect to the circRNA research.

Circular RNA expression profiles in hippocampus from mice with perinatal glyphosate exposure.

PubMed

Yu, Ning; Tong, Yun; Zhang, Danni; Zhao, Shanshan; Fan, Xinli; Wu, Lihui; Ji, Hua

2018-07-02

Glyphosate is the active ingredient in numerous herbicide formulations. The roles of glyphosate in embryo-toxicity and neurotoxicity have been reported in human and animal models. Recently, several studies have reported evidence linking neurodevelopmental disorders (NDDs) with gestational glyphosate exposure. However, the role of glyphosate in neuronal development is still not fully understood. Our previous study found that perinatal glyphosate exposure resulted in differential microRNA expression in the prefrontal cortex of mouse offspring. However, the mechanism of glyphosate-induced neurotoxicity in the developing brain is still not fully understood. Considering the pivotal role of Circular RNAs (circRNAs) in the regulation of gene expression, a circRNA microarray method was used in this study to investigate circRNA expression changes in the hippocampus of mice with perinatal glyphosate exposure. The circRNA microarrays revealed that 663 circRNAs were significantly altered in the perinatal glyphosate exposure group compared with the control group. Among them, 330 were significantly upregulated, and the other 333 were downregulated. Furthermore, the relative expression levels of mmu-circRNA-014015, mmu-circRNA-28128 and mmu-circRNA-29837 were verified using quantitative real-time polymerase chain reaction (qRT-PCR). Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses demonstrated that stress-associated steroid metabolism pathways, such as aldosterone synthesis and secretion pathways, may be involved in the neurotoxicity of glyphosate. These results showed that circRNAs are aberrantly expressed in the hippocampus of mice with perinatal glyphosate exposure and play potential roles in glyphosate-induced neurotoxicity. Copyright © 2018 Elsevier Inc. All rights reserved.

Comprehensive circular RNA expression profile in radiation-treated HeLa cells and analysis of radioresistance-related circRNAs.

PubMed

Yu, Duo; Li, Yunfeng; Ming, Zhihui; Wang, Hongyong; Dong, Zhuo; Qiu, Ling; Wang, Tiejun

2018-01-01

Cervical cancer is one of the most common cancers in women worldwide. Malignant tumors develop resistance mechanisms and are less sensitive to or do not respond to irradiation. With the development of high-throughput sequencing technologies, circular RNA (circRNA) has been identified in an increasing number of diseases, especially cancers. It has been reported that circRNA can compete with microRNAs (miRNAs) to change the stability or translation of target RNAs, thus regulating gene expression at the transcriptional level. However, the role of circRNAs in cervical cancer and the radioresistance mechanisms of HeLa cells are unknown. The objective of this study is to investigate the role of circRNAs in radioresistance in HeLa cells. High-throughput sequencing and bioinformatics analysis of irradiated and sham-irradiated HeLa cells. The reliability of high-throughput RNA sequencing was validated using quantitative real-time polymerase chain reaction. The most significant circRNA functions and pathways were selected by Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses. A circRNA-miRNA-target gene interaction network was used to find circRNAs associated with radioresistance. Moreover, a protein-protein interaction network was constructed to identify radioresistance-related hub proteins. High-throughput sequencing allowed the identification of 16,893 circRNAs involved in the response of HeLa cells to radiation. Compared with the control group, there were 153 differentially expressed circRNAs, of which 76 were up-regulated and 77 were down-regulated. GO covered three domains: biological process (BP), cellular component (CC) and molecular function (MF). The terms assigned to the BP domain were peptidyl-tyrosine dephosphorylation and regulation of cell migration. The identified CC terms were cell-cell adherens junction, nucleoplasm and cytosol, and the identified MF terms were protein binding and protein tyrosine phosphatase activity. The top five KEGG pathways were MAPK signaling pathway, endocytosis, axon guidance, neurotrophin signaling pathway, and SNARE interactions in vesicular transport. The protein-protein interaction analysis indicated that 19 proteins might be hub proteins. CircRNAs may play a major role in the response to radiation. These findings may improve our understanding of the role of circRNAs in radioresistance in HeLa cells and allow the development of novel therapeutic approaches.

Étude par diffraction des rayons X de la nitruration plasma d'un acier 304L Influence sur l'oxydation à 1000 ^{circ}C

NASA Astrophysics Data System (ADS)

Marot, L.; Buscail, H.; Straboni, A.; Riffard, F.; Caudron, E.; Cueff, R.

2002-07-01

This work presents the influence of various nitridation parameters on the 304L steel oxidation at 1000 ^{circ}C, in air under atmospheric pressure. Nitridation temperatures were ranging between 300 ^{circ}C and 430 ^{circ}C with exposure times lasting from 2 to 8 hours. At 300 and 430 ^{circ}C, the nitridation treatment leads to the solid solution surface formation γ-N without any nitride formation. After oxidation at 1000 ^{circ}C of blank specimens, X ray diffraction reveals the FeCr2O4 spinel formation. This oxide does not act as a good diffusion barrier. With nitrogen treated specimens, the higher the nitridation temperature is and the longer the exposure time is, better is the oxidation behaviour at 1000 ^{circ}C. We then observe that the Cr{1,3}Fe{0,7}O3 oxide is more present in the oxide sale from the very beginning of the oxidation test which is correlated to a final lower mass gain. Cette étude porte sur l'influence des paramètres de nitruration plasma sur l'oxydation de l'acier 304L à 1000 ^{circ}C, sous air, à la pression atmosphérique. Les températures employées lors de la nitruration ont été de 300 ^{circ}C et 430 ^{circ}C pour des durées de nitruration variant entre 2 et 8 heures. A 300 et 430 ^{circ}C, la nitruration conduit à la formation d'une solution solide γ-N en surface sans provoquer la formation de nitrures. Après oxydation à 1000 ^{circ}C du 304L non nitruré, la diffraction des rayons X révèle la formation d'une couche de type spinelle FeCr2O4 qui ne semble pas jouer le rôle de barrière de diffusion. Pour les échantillons préalablement nitrurés, plus la température de nitruration est élevée et plus la durée du traitement est longue, meilleur est le comportement en oxydation. Nous observons alors l'oxyde Cr{1,3}Fe{0,7}O3 en proportion importante dès le début de l'oxydation et une prise de masse finale plus faible.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Balaji, Bhaskaran; Cholis, Ilias; Fox, Patrick J.

We analyze the gamma-ray sky at energies of 0.5 to 50 GeV using the undecimated wavelet transform on the sphere. Focusing on the innermore » $$60^{\\circ} \\times 60^{\\circ}$$ of the sky, we identify and characterize four separate residuals beyond the expected Milky Way diffuse emission. We detect the \\textit{Fermi} Bubbles, finding compelling evidence that they are diffuse in nature and contain very little small-scale structure. We detect the "cocoon" inside the Southern Bubble, and we also identify its northern counterpart above 2 GeV. The Northern Cocoon lies along the same axis but is $$\\sim 30 \\%$$ dimmer than the southern one. We characterize the Galactic center excess, which we find extends up to $$20^{\\circ}$$ in $|b|$. At latitudes $$|b| \\leq 5^{\\circ}$$ we find evidence for power in small angular scales that could be the result of point-source contributions, but for $$|b| \\geq 5^{\\circ}$$ the Galactic center excess is dominantly diffuse in its nature. Our findings show that either the Galactic center excess and {\\it Fermi} Bubbles connect smoothly or that the Bubbles brighten significantly below $$15^\\circ$$ in latitude. We find that the Galactic center excess appears off-center by a few degrees towards negative $$\\ell$$. Additionally, we find and characterize two emissions along the Galactic disk centered at $$\\ell \\simeq +25^{\\circ}$$ and $$-20^{\\circ}$$. These emissions are significantly more elongated along the Galactic disk than the Galactic center excess.« less

Circular Noncoding RNA HIPK3 Mediates Retinal Vascular Dysfunction in Diabetes Mellitus.

PubMed

Shan, Kun; Liu, Chang; Liu, Bai-Hui; Chen, Xue; Dong, Rui; Liu, Xin; Zhang, Yang-Yang; Liu, Ban; Zhang, Shu-Jie; Wang, Jia-Jian; Zhang, Sheng-Hai; Wu, Ji-Hong; Zhao, Chen; Yan, Biao

2017-10-24

The vascular complications of diabetes mellitus are the major causes of morbidity and mortality among people with diabetes. Circular RNAs are a class of endogenous noncoding RNAs that regulate gene expression in eukaryotes. In this study, we investigated the role of circular RNA in retinal vascular dysfunction induced by diabetes mellitus. Quantitative polymerase chain reactions, Sanger sequencing, and Northern blots were conducted to detect circular HIPK3 (circHIPK3) expression pattern on diabetes mellitus-related stresses. MTT (3-[4,5-dimethythiazol-2-yl]-2,5-diphenyl tetrazolium bromide) assays, EdU (5-ethynyl-2'-deoxyuridine) incorporation assays, Transwell migration assays, and Matrigel assays were conducted to detect the role of circHIPK3 in retinal endothelial cell function in vitro. Retinal trypsin digestion, vascular permeability assays, and ELISA assays were conducted to detect the role of circHIPK3 in retinal vascular dysfunction in vivo. Bioinformatics analysis, luciferase activity assays, RNA pull-down assays, and in vitro studies were conducted to reveal the mechanism of circHIPK3-mediated retinal vascular dysfunction. circHIPK3 expression was significantly upregulated in diabetic retinas and retinal endothelial cells following stressors related to diabetes mellitus. circHIPK3 silencing or overexpressing circHIPK3 changed retinal endothelial cell viability, proliferation, migration, and tube formation in vitro. circHIPK3 silencing in vivo alleviated retinal vascular dysfunction, as shown by decreased retinal acellular capillaries, vascular leakage, and inflammation. circHIPK3 acted as an endogenous miR-30a-3p sponge to sequester and inhibit miR-30a-3p activity, which led to increased vascular endothelial growth factor-C, FZD4, and WNT2 expression. Ectopic expression of miR-30a-3p mimicked the effect of circHIPK3 silencing on vascular endothelial phenotypes in vivo and in vitro. The circular RNA circHIPK3 plays a role in diabetic retinopathy by blocking miR-30a function, leading to increased endothelial proliferation and vascular dysfunction. These data suggest that circular RNA is a potential target to control diabetic proliferative retinopathy. © 2017 American Heart Association, Inc.

Systematic identification and comparison of expressed profiles of lncRNAs and circRNAs with associated co-expression and ceRNA networks in mouse germline stem cells

PubMed Central

Wu, Ji

2017-01-01

Accumulating evidence indicates that long noncoding RNAs (lncRNAs) and circular RNAs (circRNAs) involve in germ cell development. However, little is known about the functions and mechanisms of lncRNAs and circRNAs in self-renewal and differentiation of germline stem cells. Therefore, we explored the expression profiles of mRNAs, lncRNAs, and circRNAs in male and female mouse germline stem cells by high-throughput sequencing. We identified 18573 novel lncRNAs and 18822 circRNAs in the germline stem cells and further confirmed the existence of these lncRNAs and circRNAs by RT-PCR. The results showed that male and female germline stem cells had similar GDNF signaling mechanism. Subsequently, 8115 mRNAs, 3996 lncRNAs, and 921 circRNAs exhibited sex-biased expression that may be associated with germline stem cell acquisition of the sex-specific properties required for differentiation into gametes. Gene Ontology (GO) and KEGG pathway enrichment analyses revealed different functions for these sex-biased lncRNAs and circRNAs. We further constructed correlated expression networks including coding–noncoding co-expression and competing endogenous RNAs with bioinformatics. Co-expression analysis showed hundreds of lncRNAs were correlated with sex differences in mouse germline stem cells, including lncRNA Gm11851, lncRNA Gm12840, lncRNA 4930405O22Rik, and lncRNA Atp10d. CeRNA network inferred that lncRNA Meg3 and cirRNA Igf1r could bind competitively with miRNA-15a-5p increasing target gene Inha, Acsl3, Kif21b, and Igfbp2 expressions. These findings provide novel perspectives on lncRNAs and circRNAs and lay a foundation for future research into the regulating mechanisms of lncRNAs and circRNAs in germline stem cells. PMID:28404936

Foreskin reconstruction vs circumcision in distal hypospadias.

PubMed

Rampersad, Rajay; Nyo, Yoke Lin; Hutson, John; O'Brien, Mike; Heloury, Yves

2017-10-01

The purpose of the study was to determine if there were differences in the complication rates between foreskin reconstruction (FR) and circumcision (CIRC) in distal hypospadias repairs. The primary outcomes were urethrocutaneous fistula (UF) and dehiscence. The data of distal hypospadias operated between 2005 and 2013 were retrospectively reviewed. The inclusion criteria were any distal hypospadias repair that required an urethroplasty. The exclusion criteria were follow-up <1 year, redo procedures, chordee greater than 20°, and incomplete data. Univariate and multivariate analysis was performed on the results. 213 patients were included (95 FR and 118 CIRC). The 2 groups were comparable for age at surgery 19.32 months in FR and 14.25 months in CIRC. Mathieu repair was more common in FR (47/95-49.47%) than in CIRC (45/118-38.14%). The total subsequent procedures required were 23 in FR and 57 in CIRC. The incidence of UF was 6.3% (6/95) in FR and 27.1% (32/118) in CIRC (p < 0.001, OR 5.52, 95% CI 2.2-13.9). Complete dehiscence rates were 3.16% (3/95) FR vs 11.02% (13/118) for CIRC (p = 0.037, OR 3.8, 95% CI 1.05-13.74). The incidence of patients requiring reoperation was 18.9% (18/95) in FR versus 45.8% (54/118) in CIRC (p < 0.001, OR 3.61, 95% CI 1.93-6.76). Foreskin Reconstruction conferred a significantly lower rate of complications, particularly the UF rate, dehiscence rate, and number of patients that required reoperation. Our rate of complications in the CIRC group is much higher than other published data.

Integrative analysis of Arabidopsis thaliana transcriptomics reveals intuitive splicing mechanism for circular RNA.

PubMed

Sun, Xiaoyong; Wang, Lin; Ding, Jiechao; Wang, Yanru; Wang, Jiansheng; Zhang, Xiaoyang; Che, Yulei; Liu, Ziwei; Zhang, Xinran; Ye, Jiazhen; Wang, Jie; Sablok, Gaurav; Deng, Zhiping; Zhao, Hongwei

2016-10-01

A new regulatory class of small endogenous RNAs called circular RNAs (circRNAs) has been described as miRNA sponges in animals. Using 16 Arabidopsis thaliana RNA-Seq data sets, we identified 803 circRNAs in RNase R-/non-RNase R-treated samples. The results revealed the following features: Canonical and noncanonical splicing can generate circRNAs; chloroplasts are a hotspot for circRNA generation; furthermore, limited complementary sequences exist not only in introns, but also in the sequences flanking splice sites. The latter finding suggests that multiple combinations between complementary sequences may facilitate the formation of the circular structure. Our results contribute to a better understanding of this novel class of plant circRNAs. © 2016 Federation of European Biochemical Societies.

[Circular RNA in human disease and their potential clinic significance].

PubMed

Chen, Yonghua; Li, Cheng; Tan, Chunlu; Mai, Gang; Liu, Xubao

2017-02-10

Circular RNAs (circ RNAs) are a novel type of RNA that, unlike linear RNAs, form a covalently closed continuous loop and are highly represented in the eukaryotic transcriptome. They share a stable structure, high expression and often exhibit tissue/developmental-stage-specific expression. Emerging evidence indicates that circRNAs might play important roles in human disease, such as cancer, neurological disorders and atherosclerotic vascular disease risk. The huge potentials of circRNAs are recently being discovered from the laboratory to the clinic. CircRNAs might be developed as a potential novel and stable biomarker and potential drugs used in disease diagnosis and treatment. Here, we review the current understanding of the roles of circRNAs in human disease and their potential clinic significance in disease.

Circular non-coding RNA ANRIL modulates ribosomal RNA maturation and atherosclerosis in humans

PubMed Central

Holdt, Lesca M.; Stahringer, Anika; Sass, Kristina; Pichler, Garwin; Kulak, Nils A.; Wilfert, Wolfgang; Kohlmaier, Alexander; Herbst, Andreas; Northoff, Bernd H.; Nicolaou, Alexandros; Gäbel, Gabor; Beutner, Frank; Scholz, Markus; Thiery, Joachim; Musunuru, Kiran; Krohn, Knut; Mann, Matthias; Teupser, Daniel

2016-01-01

Circular RNAs (circRNAs) are broadly expressed in eukaryotic cells, but their molecular mechanism in human disease remains obscure. Here we show that circular antisense non-coding RNA in the INK4 locus (circANRIL), which is transcribed at a locus of atherosclerotic cardiovascular disease on chromosome 9p21, confers atheroprotection by controlling ribosomal RNA (rRNA) maturation and modulating pathways of atherogenesis. CircANRIL binds to pescadillo homologue 1 (PES1), an essential 60S-preribosomal assembly factor, thereby impairing exonuclease-mediated pre-rRNA processing and ribosome biogenesis in vascular smooth muscle cells and macrophages. As a consequence, circANRIL induces nucleolar stress and p53 activation, resulting in the induction of apoptosis and inhibition of proliferation, which are key cell functions in atherosclerosis. Collectively, these findings identify circANRIL as a prototype of a circRNA regulating ribosome biogenesis and conferring atheroprotection, thereby showing that circularization of long non-coding RNAs may alter RNA function and protect from human disease. PMID:27539542

Circular RNAs are long-lived and display only minimal early alterations in response to a growth factor

PubMed Central

Enuka, Yehoshua; Lauriola, Mattia; Feldman, Morris E.; Sas-Chen, Aldema; Ulitsky, Igor; Yarden, Yosef

2016-01-01

Circular RNAs (circRNAs) are widespread circles of non-coding RNAs with largely unknown function. Because stimulation of mammary cells with the epidermal growth factor (EGF) leads to dynamic changes in the abundance of coding and non-coding RNA molecules, and culminates in the acquisition of a robust migratory phenotype, this cellular model might disclose functions of circRNAs. Here we show that circRNAs of EGF-stimulated mammary cells are stably expressed, while mRNAs and microRNAs change within minutes. In general, the circRNAs we detected are relatively long-lived and weakly expressed. Interestingly, they are almost ubiquitously co-expressed with the corresponding linear transcripts, and the respective, shared promoter regions are more active compared to genes producing linear isoforms with no detectable circRNAs. These findings imply that altered abundance of circRNAs, unlike changes in the levels of other RNAs, might not play critical roles in signaling cascades and downstream transcriptional networks that rapidly commit cells to specific outcomes. PMID:26657629

Foxo3 circular RNA promotes cardiac senescence by modulating multiple factors associated with stress and senescence responses.

PubMed

Du, William W; Yang, Weining; Chen, Yu; Wu, Zhong-Kai; Foster, Francis Stuart; Yang, Zhenguo; Li, Xiangmin; Yang, Burton B

2017-05-07

Circular RNAs are a subclass of non-coding RNAs detected within mammalian cells. This study was designed to test the roles of a circular RNA circ-Foxo3 in senescence using in vitro and in vivo approaches. Using the approaches of molecular and cellular biology, we show that a circular RNA generated from a member of the forkhead family of transcription factors, Foxo3, namely circ-Foxo3, was highly expressed in heart samples of aged patients and mice, which was correlated with markers of cellular senescence. Doxorubicin-induced cardiomyopathy was aggravated by ectopic expression of circ-Foxo3 but was relieved by silencing endogenous circ-Foxo3. We also found that silencing circ-Foxo3 inhibited senescence of mouse embryonic fibroblasts and that ectopic expression of circ-Foxo3 induced senescence. We found that circ-Foxo3 was mainly distributed in the cytoplasm, where it interacted with the anti-senescent protein ID-1 and the transcription factor E2F1, as well as the anti-stress proteins FAK and HIF1α. We conclude that ID-1, E2F1, FAK, and HIF1α interact with circ-Foxo3 and are retained in the cytoplasm and could no longer exert their anti-senescent and anti-stress roles, resulting in increased cellular senescence. Published on behalf of the European Society of Cardiology. All rights reserved. © The Author 2016. For permissions please email: journals.permissions@oup.com.

Identification of Prostate Cancer-Specific Circular RNAs

DTIC Science & Technology

2016-12-01

they often have regulatory functions. For example, circRNAs can serve as endogenous microRNA sponges to neutralize the microRNA function. However, it...circRNAs is the capability to serve as sponges to neutralize the endogenous microRNAs. In this regard, all of these circRNAs had the potential to

Circular RNA expression in basal cell carcinoma.

PubMed

Sand, Michael; Bechara, Falk G; Sand, Daniel; Gambichler, Thilo; Hahn, Stephan A; Bromba, Michael; Stockfleth, Eggert; Hessam, Schapoor

2016-05-01

Circular RNAs (circRNAs), are nonprotein coding RNAs consisting of a circular loop with multiple miRNA, binding sites called miRNA response elements (MREs), functioning as miRNA sponges. This study was performed to identify differentially expressed circRNAs and their MREs in basal cell carcinoma (BCC). Microarray circRNA expression profiles were acquired from BCC and control followed by qRT-PCR validation. Bioinformatical target prediction revealed multiple MREs. Sequence analysis was performed concerning MRE interaction potential with the BCC miRNome. We identified 23 upregulated and 48 downregulated circRNAs with 354 miRNA response elements capable of sequestering miRNA target sequences of the BCC miRNome. The present study describes a variety of circRNAs that are potentially involved in the molecular pathogenesis of BCC.

Altered expression pattern of circular RNAs in primary and metastatic sites of epithelial ovarian carcinoma.

PubMed

Ahmed, Ikhlak; Karedath, Thasni; Andrews, Simeon S; Al-Azwani, Iman K; Mohamoud, Yasmin Ali; Querleu, Denis; Rafii, Arash; Malek, Joel A

2016-06-14

Recently, a class of endogenous species of RNA called circular RNA (circRNA) has been shown to regulate gene expression in mammals and their role in cellular function is just beginning to be understood. To investigate the role of circRNAs in ovarian cancer, we performed paired-end RNA sequencing of primary sites, peritoneal and lymph node metastases from three patients with stage IIIC ovarian cancer. We developed an in-house computational pipeline to identify and characterize the circRNA expression from paired-end RNA-Seq libraries. This pipeline revealed thousands of circular isoforms in Epithelial Ovarian Carcinoma (EOC). These circRNAs are enriched for potentially effective miRNA seed matches. A significantly larger number of circRNAs are differentially expressed between tumor sites than mRNAs. Circular and linear expression exhibits an inverse trend for many cancer related pathways and signaling pathways like NFkB, PI3k/AKT and TGF-β typically activated for mRNA in metastases are inhibited for circRNA expression. Further, circRNAs show a more robust expression pattern across patients than mRNA forms indicating their suitability as biomarkers in highly heterogeneous cancer transcriptomes. The consistency of circular RNA expression may offer new candidates for cancer treatment and prognosis.

A High Resolution Survey of the Galactic Plane at 408 MHz

NASA Astrophysics Data System (ADS)

Tung, A. K.; Kothes, R.; Landecker, T. L.; Geisbüsch, J.; Del Rizzo, D.; Taylor, A. R.; Brunt, C. M.; Gray, A. D.; Dougherty, S. M.

2017-10-01

The interstellar medium is a complex “ecosystem” with gas constituents in the atomic, molecular and ionized states, dust, magnetic fields, and relativistic particles. The Canadian Galactic Plane Survey has imaged these constituents at multiple radio and infrared frequencies with angular resolution of the order of arcminutes. This paper presents radio continuum data at 408 MHz over the area of 52^\\circ ≤slant {\\ell }≤slant 193^\\circ , -6\\buildrel{\\circ}\\over{.} 5≤slant b≤slant 8\\buildrel{\\circ}\\over{.} 5, with an extension to b=21^\\circ in the range of 97^\\circ ≤slant {\\ell }≤slant 120^\\circ , with angular resolution 2\\buildrel{ \\prime}\\over{.} 8× 2\\buildrel{ \\prime}\\over{.} 8 cosecδ. Observations were made with the Synthesis Telescope at the Dominion Radio Astrophysical Observatory as part of the Canadian Galactic Plane Survey. The calibration of the survey using existing radio source catalogs is described. The accuracy of 408 MHz flux densities from the data is 6%. Information on large structures has been incorporated into the data using the single-antenna survey of Haslam et al. The paper presents the data, describes how it can be accessed electronically, and gives examples of applications of the data to ISM research.

Altered expression pattern of circular RNAs in primary and metastatic sites of epithelial ovarian carcinoma

PubMed Central

Ahmed, Ikhlak; Karedath, Thasni; Andrews, Simeon S.; Al, Iman K.; Mohamoud, Yasmin Ali; Querleu, Denis; Rafii, Arash; Malek, Joel A.

2016-01-01

Recently, a class of endogenous species of RNA called circular RNA (circRNA) has been shown to regulate gene expression in mammals and their role in cellular function is just beginning to be understood. To investigate the role of circRNAs in ovarian cancer, we performed paired-end RNA sequencing of primary sites, peritoneal and lymph node metastases from three patients with stage IIIC ovarian cancer. We developed an in-house computational pipeline to identify and characterize the circRNA expression from paired-end RNA-Seq libraries. This pipeline revealed thousands of circular isoforms in Epithelial Ovarian Carcinoma (EOC). These circRNAs are enriched for potentially effective miRNA seed matches. A significantly larger number of circRNAs are differentially expressed between tumor sites than mRNAs. Circular and linear expression exhibits an inverse trend for many cancer related pathways and signaling pathways like NFkB, PI3k/AKT and TGF-β typically activated for mRNA in metastases are inhibited for circRNA expression. Further, circRNAs show a more robust expression pattern across patients than mRNA forms indicating their suitability as biomarkers in highly heterogeneous cancer transcriptomes. The consistency of circular RNA expression may offer new candidates for cancer treatment and prognosis. PMID:27119352

Identification and integrated analysis of differentially expressed lncRNAs and circRNAs reveal the potential ceRNA networks during PDLSC osteogenic differentiation.

PubMed

Gu, Xiuge; Li, Mengying; Jin, Ye; Liu, Dongxu; Wei, Fulan

2017-12-02

Researchers have been exploring the molecular mechanisms underlying the control of periodontal ligament stem cell (PDLSC) osteogenic differentiation. Recently, long noncoding RNAs (lncRNAs) and circular RNAs (circRNAs) were shown to function as competitive endogenous RNAs (ceRNAs) to regulate the effect of microRNAs (miRNAs) on their target genes during cell differentiation. However, comprehensive identification and integrated analysis of lncRNAs and circRNAs acting as ceRNAs during PDLSC osteogenic differentiation have not been performed. PDLSCs were derived from healthy human periodontal ligament and cultured separately with osteogenic induction and normal media for 7 days. Cultured PDLSCs were positive for STRO-1 and CD146 and negative for CD31 and CD45. Osteo-induced PDLSCs showed increased ALP (alkaline phosphatase) activity and up-regulated expression levels of the osteogenesis-related markers ALP, Runt-related transcription factor 2 and osteocalcin. Then, a total of 960 lncRNAs and 1456 circRNAs were found to be differentially expressed by RNA sequencing. The expression profiles of eight lncRNAs and eight circRNAs were measured with quantitative real-time polymerase chain reaction and were shown to agree with the RNA-seq results. Furthermore, the potential functions of lncRNAs and circRNAs as ceRNAs were predicted based on miRanda and were investigated using Gene Ontology and Kyoto Encyclopedia of Genes and Genomes analysis. In total, 147 lncRNAs and 1382 circRNAs were predicted to combine with 148 common miRNAs and compete for miRNA binding sites with 744 messenger RNAs. These mRNAs were predicted to significantly participate in osteoblast differentiation, the MAPK pathway, the Wnt pathway and the signaling pathways regulating pluripotency of stem cells. Among them, lncRNAs coded as TCONS_00212979 and TCONS_00212984, as well as circRNA BANP and circRNA ITCH, might interact with miRNA34a and miRNA146a to regulate PDLSC osteogenic differentiation via the MAPK pathway. This study comprehensively identified lncRNAs/circRNAs and first integrated their potential ceRNA function during PDLSC osteogenic differentiation. These findings suggest that specific lncRNAs and circRNAs might function as ceRNAs to promote PDLSC osteogenic differentiation and periodontal regeneration.

Circular RNA 0000096 affects cell growth and migration in gastric cancer.

PubMed

Li, Peifei; Chen, Huilin; Chen, Shengcan; Mo, Xiaoyan; Li, Tianwen; Xiao, Bingxiu; Yu, Rui; Guo, Junming

2017-02-28

Circular RNAs (circRNAs) are a class of non-coding RNAs broadly expressed in cells of various species. Their role in cancers, especially in gastric cancer, is poorly understood. Circular RNA 0000096 (hsa_circ_0000096) levels in 101 paired gastric cancer tissues and adjacent non-tumorous tissues from patients with gastric cancer were detected by real-time quantitative reverse transcription-polymerase chain reaction. A receiver operating characteristic curve was generated to evaluate the diagnostic value of hsa_circ_0000096. RNA interference was used to manipulate the expression of hsa_circ_0000096. Its biological effects were evaluated by flow cytometry, real-time cell analysis, a wound scratch assay, western blot analysis and xenograft models. Hsa_circ_0000096 was found to be significantly downregulated in gastric cancer tissues and gastric cancer cell lines compared with paired adjacent non-tumorous tissues and normal gastric epithelial cells (P<0.001). Moreover, knockdown of hsa_circ_0000096 significantly inhibited cell proliferation and migration in vitro and in vivo. The results of both immunohistochemical and western blot analyses showed that the protein levels of cyclin D1, cyclin-dependent kinase 6 (CDK6), matrix metalloproteinase-2 and MMP-9 were significantly reduced in vitro and in vivo. A gastric cancer xenograft nude mouse model indicated that Ki67 and VEGF were reduced in a dose-dependent manner following knockdown of hsa_circ_0000096. However, the expression of E-cadherin increased. Hsa_circ_0000096 may be used as a potential novel biomarker for gastric cancer. It affects gastric cancer cell growth and migration by regulating cyclin D1, CDK6, MMP-2 and MMP-9.

Circular RNA participates in the carcinogenesis and the malignant behavior of cancer.

PubMed

Zhao, Zhen-Jun; Shen, Jun

2017-05-04

Circular RNAs (circRNAs) are long, non-coding RNAs that result from the non-canonical splicing of linear pre-mRNAs. However, the characteristics and the critical role of circRNA in co-/post-transcriptional regulation were not well recognized until the "microRNA sponge" function of circRNA is discovered. Recent studies have mainly been devoted to the function of the circular RNA sponge for miR-7 (ciRS-7) and sex-determining region Y (SRY) by targeting microRNA-7 (miR-7) and microRNA-138 (miR-138), respectively. In this review, we illustrate the specific role of circRNAs in a wide variety of cancers and in regulating the biological behavior of cancers via miR-7 or miR-138 regulation. Furthermore, circRNA, together with its gene silencing ability, also shows its potential in RNA interference (RNAi) therapy by binding to target RNAs, which provides a novel perspective in cancer treatment. Thus, this review concerns the biogenesis, biological function, oncogenesis, progression and possible therapies for cancer involving circRNAs.

Circular RNA participates in the carcinogenesis and the malignant behavior of cancer

PubMed Central

Zhao, Zhen-Jun; Shen, Jun

2017-01-01

Abstract Circular RNAs (circRNAs) are long, non-coding RNAs that result from the non-canonical splicing of linear pre-mRNAs. However, the characteristics and the critical role of circRNA in co-/post-transcriptional regulation were not well recognized until the “microRNA sponge” function of circRNA is discovered. Recent studies have mainly been devoted to the function of the circular RNA sponge for miR-7 (ciRS-7) and sex-determining region Y (SRY) by targeting microRNA-7 (miR-7) and microRNA-138 (miR-138), respectively. In this review, we illustrate the specific role of circRNAs in a wide variety of cancers and in regulating the biological behavior of cancers via miR-7 or miR-138 regulation. Furthermore, circRNA, together with its gene silencing ability, also shows its potential in RNA interference (RNAi) therapy by binding to target RNAs, which provides a novel perspective in cancer treatment. Thus, this review concerns the biogenesis, biological function, oncogenesis, progression and possible therapies for cancer involving circRNAs. PMID:26649774

Triple differential cross-sections of Ne (2s2) in coplanar to perpendicular plane geometry

NASA Astrophysics Data System (ADS)

Chen, L. Q.; Khajuria, Y.; Chen, X. J.; Xu, K. Z.

2003-10-01

The distorted wave Born approximation (DWBA) with the spin averaged static exchange potential has been used to calculate the triple differential cross-sections (TDCSs) for Ne (2s^2) ionization by electron impact in coplanar to perpendicular plane symmetric geometry at 110.5 eV incident electron energy. The present theoretical results at gun angles Psi = 0^circ (coplanar symmetric geometry) and Psi = 90^circ (perpendicular plane geometry) are in satisfactory agreement with the available experimental data. A deep interference minimum appears in the TDCS in the coplanar symmetric geometry and a strong peak at scattering angle xi = 90^circ caused by the single collision mechanism has been observed in the perpendicular plane geometry. The TDCSs at the gun angles Psi = 30^circ, and Psi = 60^circ are predicted.

Circular RNAs: Regulators of Cancer-Related Signaling Pathways and Potential Diagnostic Biomarkers for Human Cancers

PubMed Central

Yang, Zuozhang; Xie, Lin; Han, Lei; Qu, Xin; Yang, Yihao; Zhang, Ya; He, Zewei; Wang, Yu; Li, Jing

2017-01-01

Circular RNAs (circRNAs) are newly discovered endogenous non-coding RNAs featuring structural stability, high abundance, and tissue-specific expression. CircRNAs are prevalent and conserved in mammalian cells. They are involved in cellular processes and regulate gene expression at the transcriptional or post-transcriptional level by interacting with microRNAs (miRNAs) and other molecules. Recent studies have shown that circRNAs play an important role in the progression of various human diseases including atherosclerosis, nervous system disorders, diabetes, and cancer. In this review, we summarize the advances on endogenous circRNAs in eukaryotic cells and elucidate their diagnostic and prognostic significance in human cancers. Especially, we highlight the involvement of circRNAs in signal transduction pathways as well as their clinical potential to serve as biomarkers. PMID:28839467

Microarray analysis of circular RNA expression profiles associated with gemcitabine resistance in pancreatic cancer cells.

PubMed

Xu, Chao; Yu, Yue; Ding, Fei

2018-07-01

Pancreatic cancer (PC) is one of the most malignant tumors of the digestive system due to its rapid progression, metastasis and resistance to chemotherapy. Gemcitabine (GEM) chemotherapy is the first‑choice treatment for advanced PC. However, the effect of GEM‑based chemotherapy on PC is limited due to the development of chemoresistance, and the molecular mechanisms underlying this resistance have yet to be investigated. Circular RNAs (circRNAs), which can function as microRNA sponges, have been found to be involved in the development of several types of cancer. However, research on circRNAs in PC drug resistance is limited. In the present study, the GEM‑resistant PC cell line, SWl990/GZ, was successfully established by treating parental SWl990 cells in vitro with increasing concentrations of GEM in culture medium intermittently for 10 months. By analyzing the expression profiles of circRNAs in microarray between SWl990/GZ and parental SW1990 cells, we identified 26 upregulated and 55 downregulated circRNAs (fold change ≥2 and P<0.05) among 12,866 detected circRNAs in SWl990/GZ compared with SW1990 cells. Furthermore, the changes in the expression of six representative circRNAs was validated by reverse transcription‑quantitative PCR. In addition, Kyoto Encyclopedia of Genes and Genomes pathway analysis and Gene Ontology analysis were performed. These analyses revealed that the dysregulated circRNAs regulated several cancer‑related pathways, such as the mitogen‑activated protein kinase (MAPK) and mammalian target of rapamycin (mTOR) signaling pathways, and may be involved in the biological process of the regulation of chemoresistance, including nucleic acid metabolic process and cellular response to stress. The present study undertook a comprehensive expression analysis and revealed the functional profiles of differentially expressed circRNAs associated with GEM‑resistance in PC, thereby indicating the possible participation of these dysregulated circRNAs in the development of chemoresistance and providing novel potential therapeutic targets for PC.

Detection and Analysis of Circular RNAs by RT-PCR.

PubMed

Panda, Amaresh C; Gorospe, Myriam

2018-03-20

Gene expression in eukaryotic cells is tightly regulated at the transcriptional and posttranscriptional levels. Posttranscriptional processes, including pre-mRNA splicing, mRNA export, mRNA turnover, and mRNA translation, are controlled by RNA-binding proteins (RBPs) and noncoding (nc)RNAs. The vast family of ncRNAs comprises diverse regulatory RNAs, such as microRNAs and long noncoding (lnc)RNAs, but also the poorly explored class of circular (circ)RNAs. Although first discovered more than three decades ago by electron microscopy, only the advent of high-throughput RNA-sequencing (RNA-seq) and the development of innovative bioinformatic pipelines have begun to allow the systematic identification of circRNAs (Szabo and Salzman, 2016; Panda et al ., 2017b; Panda et al ., 2017c). However, the validation of true circRNAs identified by RNA sequencing requires other molecular biology techniques including reverse transcription (RT) followed by conventional or quantitative (q) polymerase chain reaction (PCR), and Northern blot analysis (Jeck and Sharpless, 2014). RT-qPCR analysis of circular RNAs using divergent primers has been widely used for the detection, validation, and sometimes quantification of circRNAs (Abdelmohsen et al ., 2015 and 2017; Panda et al ., 2017b). As detailed here, divergent primers designed to span the circRNA backsplice junction sequence can specifically amplify the circRNAs and not the counterpart linear RNA. In sum, RT-PCR analysis using divergent primers allows direct detection and quantification of circRNAs.

Using circular RNA hsa_circ_0000190 as a new biomarker in the diagnosis of gastric cancer.

PubMed

Chen, Shijun; Li, Tianwen; Zhao, Qianfu; Xiao, Bingxiu; Guo, Junming

2017-03-01

Circular RNAs (circRNA) are an abundant class of non-coding RNAs in mammalian cells. However, their value in the diagnosis of cancers remains unknown. In this study, we focused on hsa_circ_0000190, which was found to be down-regulated in gastric cancer tissues in our previous microarray screening. The hsa_circ_0000190 levels in 104 paired gastric cancer tissues and adjacent non-tumor tissues, 104 plasma samples from patients with gastric cancer and 104 plasma samples from health controls were detected by quantitative reverse transcription-polymerase chain reaction (qRT-PCR). Then, the association between the expression level of hsa_circ_0000190 and the clinicopathological features of patients with gastric cancer was further analyzed. A receiver operating characteristic (ROC) curve was generated to evaluate the diagnostic value. Hsa_circ_0000190 was first found to be down-regulated in gastric cancer tissues (P<0.001) and plasma samples from patients with gastric cancer (P<0.001). Its expression levels were significantly correlated with tumor diameter (P=0.034), lymphatic metastasis (P=0.026), distal metastasis (P=0.001), TNM stage (P=0.001), and CA19-9 levels (P=0.019). The areas under the ROC curve (AUC) of hsa_circ_0000190 in tissues and plasma were up to 0.75 and 0.60, respectively. The sensitivity and specificity of the combination were 0.712 and 0.750; the AUC was increased to 0.775. These results indicated that hsa_circ_0000190 may be a novel non-invasive biomarker for the diagnosis of gastric cancer. Its AUC, sensitivity and specificity are better than commonly used biomarkers such as CEA and CA19-9. Copyright © 2017 Elsevier B.V. All rights reserved.

RNA circularization strategies in vivo and in vitro

PubMed Central

Petkovic, Sonja; Müller, Sabine

2015-01-01

In the plenitude of naturally occurring RNAs, circular RNAs (circRNAs) and their biological role were underestimated for years. However, circRNAs are ubiquitous in all domains of life, including eukaryotes, archaea, bacteria and viruses, where they can fulfill diverse biological functions. Some of those functions, as for example playing a role in the life cycle of viral and viroid genomes or in the maturation of tRNA genes, have been elucidated; other putative functions still remain elusive. Due to the resistance to exonucleases, circRNAs are promising tools for in vivo application as aptamers, trans-cleaving ribozymes or siRNAs. How are circRNAs generated in vivo and what approaches do exist to produce ring-shaped RNAs in vitro? In this review we illustrate the occurrence and mechanisms of RNA circularization in vivo, survey methods for the generation of circRNA in vitro and provide appropriate protocols. PMID:25662225

[Research Progress of CircRNA and Its Application Prospect in Forensic Medicine].

PubMed

Tu, C Y; Jin, K D; Shao, C C; Liu, B N; Zhang, Y Q; Xie, J H; Shen, Y W

2018-02-01

Circular RNA （circRNA） is a type of noncoding RNA with tissue specificity and high stability, which forms a closed continuous loop and is abundantly expressed in tissue cells. According to recent research, the regulatory function of circRNA elucidating in the occurrence and development of disease shows a potential for diagnosing clinical disease and revealing disease mechanism. This paper reviews the biological characteristics, analysis methods of circRNA and its research progress in clinical application as biomarker, and outlooks its application in the field of forensic medicine. Copyright© by the Editorial Department of Journal of Forensic Medicine.

Detecting Circular RNAs by RNA Fluorescence In Situ Hybridization.

PubMed

Zirkel, Anne; Papantonis, Argyris

2018-01-01

Fluorescence in situ hybridization (FISH) coupled to high-resolution microscopy is a powerful method for analyzing the subcellular localization of RNA. However, the detection of circular RNAs (circRNAs) using microscopy is challenging because the only feature of a circRNA that can be used for the probe design is its junction. Circular RNAs are expressed at varying levels, and for their efficient monitoring by FISH, background fluorescence levels need to be kept low. Here, we describe a FISH protocol coupled to high-precision localizations using a single fluorescently labeled probe spanning the circRNA junction; this allows circRNA detection in mammalian cells with high signal-to-noise ratios.

Circular RNAs: An emerging type of RNA in cancer.

PubMed

Hou, Li-Dan; Zhang, Jing

2017-03-01

Circular RNAs (circRNAs), a novel type of widespread and diverse endogenous non-coding RNAs (ncRNAs), which are different from the linear RNAs, form a covalently closed continuous loop without 5' or 3' polarities. The majority of circRNAs are abundant, conserved and stable across different species, and exhibit tissue/developmental-stage-specific characteristics. They are generated primarily through a type of alternative RNA splicing called "back-splicing," in which a downstream splice donor is joined to an upstream splice acceptor through splice skipping or direct splice. Recent studies have discovered circRNAs function as microRNA sponges, binding with RNA-associated proteins to form RNA-protein complexes and then regulating gene transcription and translation into polypeptides. Emerging evidence indicates that circRNAs play important roles in the regulation of the development and progression of multiple cancers by serving as potential diagnostic and predictive biomarkers involved in tumor growth and invasion and providing new strategies for cancer diagnosis and targeted therapy. In this review, we briefly delineate the diversity and characteristics of circRNAs and discuss the highlights of the biogenesis of circRNAs and their potential functions in tumor.

Pion Elastic Scattering and the (pion Pion' Proton) Reaction on HELIUM-4 in the DELTA(3,3) Region

NASA Astrophysics Data System (ADS)

Jones, Mark Kevin

This dissertation presents measurements and analyses of pi^+ and pi ^{-} elastic scattering, and ( pi^{+}, pi^ {+^'}p) and ( pi^{-},pi^{-^ '}p) reactions on ^4 He. Both experiments were done at the Los Alamos Meson Physics Facility using the Energetic Pion Channel and Spectrometer. The ^4He( pi,pi) elastic scattering cross sections were measured for pi^{+} scattering at scattering angles theta _{lab} = 110^circ -170^circ and five incident energies between T_{pi } = 90 and 180 MeV. Elastic pi ^{-} cross sections were measured only at T_{pi} = 180 MeV. The ^4He(pi, pi' p) angular correlation functions were measured for pi^{+} and pi^{-} at T_{pi} = 180 and theta_{pi^' } = 30^circ, 40 ^circ, 60^circ , 80^circ and at T _pi = 140 MeV and theta_{pi^'} = 40^circ. Using scintillators at eight angles the protons were detected in coincidence with the inelastically scattered pions. In the ^4He(pi, pi^' p) experiment unexpectedly large ratios R_{pi p} = {sigma(pi^{+}, pi^{+} p)}over{sigma( pi^{-},pi^{-} p)} of up to 50 were observed near the quasi -free angle in the angular correlation functions summed over 30.5 to 39.5 MeV in ^4He excitation energy. The (pi,pi' p) data were analyzed by a distorted wave impulse approximation code 3DEE (Ch 82), (Re 82). 3DEE models the ( pi,pi' p) reaction as a pion -induced proton knock-out and includes distortions in the incident pion, the outgoing pion, and the emitted proton waves. The calculations give R_{pi p} between 6 and 9 at all proton and pion angles. The pi^{+} calculations reproduce the absolute pi^ {+} cross sections fairly well. The pi^{-} calculations have a peak in the angular correlation function near the quasi-free angle, in contrast to the pi^ {-} data which displays a flat distribution. At proton angles near 180^circ in the center of mass of the struck mass 4 system, the measured pi^{-} cross sections are larger than the pi^ {+} cross section which is the reverse of the ratio at 0^circ. These features of the measured pi^- cross sections indicate that interference between a quasi -free process and another process is important in the ( pi,pi^' p) reaction. The measurement of ^4He( pi,pi) elastic scattering data at theta_pi = 110 ^circ-170^circ extends the angular range of previous ^4He(pi,pi) data measured at EPICS. The experiment provides high quality elastic scattering data at backward angles. The pi^{-} elastic cross section at T_pi = 180 MeV measured for this dissertation when extrapolated to theta _{cm} = 180^circ is about a factor of two smaller than the cross section measured previously at CERN (Ref. (Bi 78)). The data were analyzed using a microscopic optical model and by a phase shift fit.

ZKSCAN1 gene and its related circular RNA (circZKSCAN1) both inhibit hepatocellular carcinoma cell growth, migration, and invasion but through different signaling pathways.

PubMed

Yao, Zhicheng; Luo, Jingyan; Hu, Kunpeng; Lin, Jizong; Huang, He; Wang, Qiangliang; Zhang, Peng; Xiong, Zhiyong; He, Chonghua; Huang, Zejian; Liu, Bo; Yang, Yang

2017-04-01

There is increasing evidence that circular RNA (circRNA) are involved in cancer development, but the regulation and function of human circRNA remain largely unknown. In this study, we demonstrated that ZKSCAN1, a zinc finger family gene, is expressed in both linear and circular (circZKSCAN1) forms of RNA in human hepatocellular carcinoma (HCC) tissues and cell lines. Here, we analyzed a cohort of 102 patients and found that expression of both ZKSCAN1mRNA and circZKSCAN1 was significantly lower (P < 0.05) in the HCC samples compared with that in matched adjacent nontumorous tissues by reverse transcription PCR (RT-PCR). The low expression level of ZKSCAN1 was only associated with tumor size (P = 0.032), while the cirZKSCAN1 levels varied in patients with different tumor numbers (P < 0.01), cirrhosis (P = 0.031), vascular invasion (P = 0.002), or microscopic vascular invasion (P = 0.002), as well as with the tumor grade (P < 0.001). Silencing both ZKSCAN1mRNA and circZKSCAN1 promoted cell proliferation, migration, and invasion. In contrast, overexpression of both forms of RNA repressed HCC progression in vivo and in vitro. Silencing or overexpression of both forms of RNA did not interfere with each other. RNA-seq revealed a very different molecular basis for the observed effects; ZKSCAN1mRNA mainly regulated cellular metabolism, while circZKSCAN1 mediated several cancer-related signaling pathways, suggesting a nonredundant role for ZKSCAN1mRNA and circRNA. In conclusion, our results revealed two post-translational products (ZKSCAN1mRNA and circZKSCAN1) that cooperated closely with one another to inhibit growth, migration, and invasion of HCC. cirZKSCAN1 might be a useful marker for the diagnosis of HCC. © 2017 The Authors. Published by FEBS Press and John Wiley & Sons Ltd.

Fibre Optic Temperature Sensors Using Fluorescent Phenomena.

NASA Astrophysics Data System (ADS)

Selli, Raman Kumar

Available from UMI in association with The British Library. A number of fibre optic sensors based on fluorescent phenomena using low cost electronic and optical filtering techniques, for temperature sensing applications are described and discussed. The initial device developed uses the absorption edge change of an optical glass to monitor changes in temperature with a second wavelength reference channel being generated from a fluorescent material, neodymium doped in glass. This device demonstrates the working of the self-referencing principle in a practical device tested over the temperature range of -60^circ C to 200^circC. This initial device was improved by incorporating a microprocessor and by modifying the processing electronic circuitry. An alternative probe was constructed which used a second fibre placed along-side the addressing fibre in contrast to the original device where the fibre is placed at the opposite end of the addressing fibre. A device based on the same principle but with different absorption glasses and a different fluorescent medium, crystalline ruby, was also examined. This device operated at a lower wavelength region compared to the infra -red working region of the first device. This work illustrated the need to make an appropriate choice of sensor absorption glass so that the cheaper indicator type LEDs, which operated at lower wavelengths, may be used. Ruby is a fluorescent material which is characterized by each emission wavelength having its own temperature characteristics. The integrated energy output over the complete emission spectrum is independent of temperature. This provided a means of generating a reference from the complete spectrum while a small frequency band gave a temperature dependent output. This characteristic of ruby was used to develop a temperature measuring device. A final system which utilises the temperature dependent decay-time emission properties of crystalline ruby was developed. In this case the ruby was excited by sinusoidally modulated light. This system employs a single indicator type green LED to excite the ruby sample and a single very sensitive silicon photodiode detector with an integral amplifier for low optical signal detection. Both of these components were inexpensive. The system yielded very high performance levels in terms of precision and resolution which has the potential for commercial exploitation. The different devices developed are compared and contrasted in the light of the commercial instruments on the market and other published data.

Etude des interdiffusions en phase solide dans le contact Er/GaAs

NASA Astrophysics Data System (ADS)

Députier, S.; Guivarc'h, A.; Caulet, J.; Minier, M.; Guérin, R.

1994-05-01

Solid state interdiffusions between a thin film of erbium deposited under vacuum conditions and (001) and (111) GaAs substrates were investigated in the temperature range 350-800 ^{circ}C. Complementary analysis methods (RBS, X-ray diffraction) allow us to point out, according to annealing temperatures, successives steps of the interaction corresponding to different mixtures of phases, essentially binaries. These steps are strongly depending on the GaAs substrate orientation, especially the final step of the interdiffusions. On (001) GaAs, only two steps have been observed : no visible interaction is noticed between erbium and GaAs before 600 ^{circ}C ; the interaction begins at 600 ^{circ}C, evolves slightly and leads at 800 ^{circ}C to the nominal composition " Er{10}GaAs " which corresponds to a mixture of several phases Er5Ga3, Er and ErAs. On (111) GaAs, several steps of interaction have been found ; first of all, erbium reacts with the substrate at 400 ^{circ}C (Er5Ga3 + Er mixture), then the reaction is continuing at 600 ^{circ}C (Er5Ga3 + Er + ErAs mixture) before reaching at 800 ^{circ}C the nominal composition " Er{1,5}GaAs ", which is in fact a mixture of the three binaries ErAs + ErGa2 + Er3Ga5. It can be noticed that the 800 ^{circ}C annealing is not sufficient to reach the mixture of the phases ErAs + Ga which, according to the ternary phase diagram, should be the final stage of the interaction Er/GaAs. The analysis of the Er/GaAs interdiffusions shows that ErAs is the " key " compound around which the interaction progresses. This compound appears as an ideal candidate to realize epitaxial ErAs/GaAs heterostructures. Les interdiffusions en phase solide entre une couche mince d'erbium déposée dans des conditions d'ultra-vide et des substrats de GaAs orientés (001) et (111) ont été étudiées après des traitements thermiques d'une heure entre 350 et 800 ^{circ}C. L'utilisation de techniques complémentaires d'analyse (RBS, diffraction X) a permis de mettre en évidence, en fonction de la température de recuit, plusieurs étapes successives d'interaction correspondant à des mélanges de phases, essentiellement des binaires. Elles dépendent fortement de l'orientation du substrat de GaAs, en particulier l'étape finale des interactions. Sur GaAs (001), seules deux étapes ont été observées : avant 600 ^{circ}C, il n'y a pas d'interaction visible de l'erbium avec le substrat ; celle-ci ne s'amorce qu'à 600 ^{circ}C pour n'évoluer ensuite que faiblement et conduire, à 800 ^{circ}C, à une composition nominale " Er{10}GaAs ", mélange des phases Er5Ga3 + Er + ErAs. Sur GaAs (111), plusieurs étapes d'interaction sont observées : l'erbium réagit avec le substrat dès 400 ^{circ}C (mélange des phases Er5Ga3 + Er), puis l'interaction se poursuit à 600 ^{circ}C (mélange Er5Ga3 + Er + ErAs) avant d'atteindre à 800 ^{circ}C la composition nominale " Er{1,5}GaAs ", constituée d'un mélange de grains des trois binaires ErAs + ErGa2 + Er3Ga5. Il faut noter que le recuit à 800 ^{circ}C n'est pas suffisant pour atteindre le mélange de phases Ga + ErAs qui, selon le diagramme ternaire, devrait être le stade ultime de l'interaction Er/GaAs. L'analyse des interdiffusions Er/GaAs montre que ErAs est le composé " clé " autour duquel pivote l'interaction Er/GaAs. Ce composé apparaît comme un candidat idéal pour la réalisation d'hétérostructures épitaxiées ErAs/GaAs.

Inducing circular RNA formation using the CRISPR endoribonuclease Csy4

PubMed Central

Borchardt, Erin K.; Meganck, Rita M.; Vincent, Heather A.; Ball, Christopher B.; Ramos, Silvia B.V.; Moorman, Nathaniel J.; Marzluff, William F.; Asokan, Aravind

2017-01-01

Circular RNAs (circRNAs) are highly stable, covalently closed RNAs that are regulated in a spatiotemporal manner and whose functions are largely unknown. These molecules have the potential to be incorporated into engineered systems with broad technological implications. Here we describe a switch for inducing back-splicing of an engineered circRNA that relies on the CRISPR endoribonuclease, Csy4, as an activator of circularization. The endoribonuclease activity and 3′ end-stabilizing properties of Csy4 are particularly suited for this task. Coexpression of Csy4 and the circRNA switch allows for the removal of downstream competitive splice sites and stabilization of the 5′ cleavage product. This subsequently results in back-splicing of the 5′ cleavage product into a circRNA that can translate a reporter protein from an internal ribosomal entry site (IRES). Our platform outlines a straightforward approach toward regulating splicing and could find potential applications in synthetic biology as well as in studying the properties of different circRNAs. PMID:28223408

A Meta-Analysis of the Diagnostic Accuracy of Circular RNAs in Digestive System Malignancy.

PubMed

Chen, Zhiqiang; Zhang, Long; Han, Guoyong; Zuo, Xueliang; Zhang, Yao; Zhu, Qin; Wu, Jindao; Wang, Xuehao

2018-01-01

Circular RNAs (circRNAs), a novel class of noncoding RNAs, have been found to be dysregulated in various cancers. However, the clinical application value of these circRNAs in digestive system cancers remains to be clarified. We aimed to comprehensively explore the potential role of circRNAs as diagnostic indicators in digestive system malignancies. Relevant studies were systematically retrieved from PubMed, Web of Science and the Cochrane Library. The data that were required to complete 2 × 2 contingency tables were obtained from the included studies. Stratified analyses by cancer type, sample size and publication year were performed. Thirteen studies with 2,276 individuals were included in the meta-analysis. The pooled sensitivity and specificity of circRNAs in the diagnosis of digestive system malignancy were 0.72 [95% confidence interval (CI): 0.65-0.77] and 0.77 (95% CI: 0.72-0.81), respectively. The overall positive likelihood ratio was 3.09 (95% CI: 2.64-3.62), and the overall negative likelihood ratio was 0.37 (95% CI: 0.31-0.44). The pooled diagnostic odds ratio was 8.38 (95% CI: 6.86-10.25), and the overall area under the curve was 0.81 (95% CI: 0.77-0.84), indicating good discriminative ability of circRNAs as biomarkers for digestive system malignancy. circRNAs distinguish patients with digestive system cancer from controls with relatively high diagnostic accuracy. circRNAs may be used as potential biomarkers for the diagnosis of digestive system malignancy. © 2018 The Author(s). Published by S. Karger AG, Basel.

Circular RNA_LARP4 inhibits cell proliferation and invasion of gastric cancer by sponging miR-424-5p and regulating LATS1 expression.

PubMed

Zhang, Jing; Liu, Hui; Hou, Lidan; Wang, Ge; Zhang, Rui; Huang, Yanxia; Chen, Xiaoyu; Zhu, Jinshui

2017-09-11

Non-coding RNAs (ncRNAs) have been shown to regulate gene expression involved in tumor progression of multiple malignancies. Our previous studies indicated that large tumor suppressor kinase 1 (LATS1), a core part of Hippo signaling pathway, functions as a tumor suppressor in gastric cancer (GC). But, the underlying molecular mechanisms by which ncRNAs modulate LATS1 expression in GC remain undetermined. The correlation of LATS1 and has-miR-424-5p (miR-424) expression with clinicopathological characteristics and prognosis of GC patients was analyzed by TCGA RNA-sequencing data. A novel circular RNA_LARP4 (circLARP4) was identified to sponge miR-424 by circRNA expression profile and bioinformatic analysis. The binding site between miR-424 and LATS1 or circLARP4 was verified using dual luciferase assay and RNA immunoprecipitation (RIP) assay. The expression and localization of circLARP4 in GC tissues were investigated by fluorescence in situ hybridization (FISH). MTT, colony formation, Transwell and EdU assays were performed to assess the effects of miR-424 or circLARP4 on cell proliferation and invasion. Increased miR-424 expression or decreased LATS1 expression was associated with pathological stage and unfavorable prognosis of GC patients. Ectopic expression of miR-424 promoted proliferation and invasion of GC cells by targeting LATS1 gene. Furthermore, circLARP4 was mainly localized in the cytoplasm and inhibited biological behaviors of GC cells by sponging miR-424. The expression of circLARP4 was downregulated in GC tissues and represented an independent prognostic factor for overall survival of GC patients. circLARP4 may act as a novel tumor suppressive factor and a potential biomarker in GC.

Silica-induced initiation of circular ZC3H4 RNA/ZC3H4 pathway promotes the pulmonary macrophage activation.

PubMed

Yang, Xiyue; Wang, Jing; Zhou, Zewei; Jiang, Rong; Huang, Jie; Chen, Lulu; Cao, Zhouli; Chu, Han; Han, Bing; Cheng, Yusi; Chao, Jie

2018-06-01

Phagocytosis of silicon dioxide (SiO 2 ) into lung cells causes an inflammatory cascade that results in fibroblast proliferation and migration, followed by fibrosis. Circular RNAs (circRNAs) are a subclass of noncoding RNAs that are present within mammalian cells; however, researchers have not determined whether circRNAs are involved in the pathophysiologic process of silicosis. To elucidate the role of these RNAs in SiO 2 -induced inflammation in pulmonary macrophages, we investigated the upstream molecular mechanisms and functional effects of circRNAs on cell apoptosis, proliferation, and migration. Primary cultures of alveolar macrophages from healthy donors and from patients and the RAW264.7 macrophage cell line were used to explore the functions of circZC3H4 RNA in macrophage activation. The experimental results indicated the following: 1) SiO 2 concomitantly increased circZC3H4 RNA expression and increased ZC3H4 protein levels; 2) circular ZC3H4 (circZC3H4) RNA and ZC3H4 protein participated in SiO 2 -induced macrophage activation; and 3) SiO 2 -activated macrophages promoted fibroblast proliferation and migration via the circZC3H4 RNA/ZC3H4 pathway. The up-regulation of the ZC3H4 protein was confirmed in tissue samples from patients with silicosis. Our study elucidates a link between SiO 2 -induced macrophage activation and the circZC3H4 RNA/ZC3H4 pathway, thereby providing novel insight into the potential use of ZC3H4 to develop novel therapeutic strategies for silicosis.-Yang, X., Wang, J., Zhou, Z., Jiang, R., Huang, J., Chen, L., Cao, Z., Chu, H., Han, B., Cheng, Y., Chao, J. Silica-induced initiation of circular ZC3H4 RNA/ZC3H4 pathway promotes the pulmonary macrophage activation.

First Data Release of the ESO-ARO Public Survey SAMPLING—SMT “All-sky” Mapping of Planck Interstellar Nebulae in the Galaxy

NASA Astrophysics Data System (ADS)

Wang, Ke; Zahorecz, Sarolta; Cunningham, Maria R.; Tóth, L. Viktor; Liu, Tie; Lu, Xing; Wang, Yuan; Cosentino, Giuliana; Sung, Ren-Shiang; Sokolov, Vlas; Wang, Shen; Wang, Yuwei; Zhang, Zhiyu; Li, Di; Kim, Kee-Tae; Tatematsu, Ken’ichi; Testi, Leonardo; Wu, Yuefang; Yang, Ji; SAMPLING Collaboration

2018-01-01

We make the first data release (DR1) of the ongoing ESO Public Survey SAMPLING (http://dx.doi.org/10.7910/DVN/0L8NHX). DR1 comprises of 124 fields distributed in $70^\\circ < l < 216^\\circ$, $-35^\\circ < b < 25^\\circ$. The 12CO and 13CO (2-1) cubes are gridded in $8"$ pixels, with an effective resolution of $36"$. The channel width is 0.33 km/s and the RMS noise is $T_{\\rm mb}<0.2$ K. Once completed, SAMPLING and complementary surveys will initiate the first major step forward to characterize molecular clouds and star formation on truly Galactic scales.

What device would be best for early infant male circumcision in east and southern Africa? Provider experiences and opinions with three different devices in Kenya.

PubMed

Bailey, Robert C; Nyaboke, Irene; Otieno, Fredrick O

2017-01-01

Voluntary medical male circumcision (VMMC) reduces risk of HIV acquisition in heterosexual men by approximately 60%. As some countries approach targets for proportions of adolescents and adults circumcised, some are considering early infant male circumcision (EIMC) as a means to achieve sustainability of VMMC for long term reduction of HIV incidence. Evaluations of specialized devices for EIMC are important to provide programs with information required to make informed decisions about how to design safe, effective EIMC programs. We provide assessments by 11 providers with experience in Kenya employing all three of the devices most likely to be considered by various EIMC programs in east and Southern Africa. There was no one device that was seen to be clearly superior to the others. Each had its own advantages and disadvantages. Provider preferences were situation-specific. Most preferred the Mogen Clamp if they themselves were performing the procedure. However, most were concerned that not everyone will have the skills necessary for optimal safety. If someone else were circumcising their son, most would opt for the AccuCirc because of the risk of severing the glans when using the Mogen. A minority preferred the PrePex, but only if the baby received local anesthesia, not EMLA cream (a eutectic mixture of lidocaine 2.5% and prilocaine 2.5%), as presently prescribed by the manufacturer. In the context of a national EIMC program, all participants agreed that AccuCirc would be the device they would recommend due to protection of the glans from laceration and to the provision of a pre-assembled sterile kit that overcomes the need for additional supplies or autoclaving. All agreed that scaling up EIMC, integrating it with existing maternal child health services, will face significant challenges, not least of which is persuading already over-burdened providers to take on additional workload. These results will be useful to programmers considering introduction of EIMC services in sub-Saharan African settings.

Enhanced breast cancer progression by mutant p53 is inhibited by the circular RNA circ-Ccnb1.

PubMed

Fang, Ling; Du, William W; Lyu, Juanjuan; Dong, Jun; Zhang, Chao; Yang, Weining; He, Alina; Kwok, Yat Sze Sheila; Ma, Jian; Wu, Nan; Li, Feiya; Awan, Faryal Mehwish; He, Chengyan; Yang, Bing L; Peng, Chun; MacKay, Helen J; Yee, Albert J; Yang, Burton B

2018-05-23

TP53 mutations occur in many different types of cancers that produce mutant p53 proteins. The mutant p53 proteins have lost wild-type p53 activity and gained new functions that contribute to malignant tumor progression. Different p53 mutations create distinct profiles in loss of wild-type p53 activity and gain of functions. Targeting the consequences generated by the great number of p53 mutations would be extremely complex. Therefore, in this study we used a workaround and took advantage of the fact that mutant p53 cannot bind H2AX. Using this, we developed a new approach to repress the acquisition of mutant p53 functions. We show here that the delivery of a circular RNA circ-Ccnb1 inhibited the function of three p53 mutations. By microarray analysis and real-time PCR, we detected decreased circ-Ccnb1 expression levels in patients bearing breast carcinoma. Ectopic delivery of circ-Ccnb1 inhibited tumor growth and extended mouse viability. Using proteomics, we found that circ-Ccnb1 precipitated p53 in p53 wild-type cells, but instead precipitated Bclaf1 in p53 mutant cells. Further experiments showed that H2AX serves as a bridge, linking the interaction of circ-Ccnb1 and wild-type p53, thus allowing Bclaf1 to bind Bcl2 resulting in cell survival. In the p53 mutant cells, circ-Ccnb1 formed a complex with H2AX and Bclaf1, resulting in the induction of cell death. We found that this occurred in three p53 mutations. These results shed light on the possible development of new approaches to inhibit the malignancy of p53 mutations.

Circular RNAs (circRNAs) in Health and Disease

PubMed Central

Haque, Shahnaz; Harries, Lorna W.

2017-01-01

Splicing events do not always produce a linear transcript. Circular RNAs (circRNAs) are a class of RNA that are emerging as key new members of the gene regulatory milieu, which are produced by back-splicing events within genes. In circRNA formation, rather than being spliced in a linear fashion, exons can be circularised by use of the 3′ acceptor splice site of an upstream exon, leading to the formation of a circular RNA species. circRNAs have been demonstrated across species and have the potential to present genetic information in new orientations distinct from their parent transcript. The importance of these RNA players in gene regulation and normal cellular homeostasis is now beginning to be recognised. They have several potential modes of action, from serving as sponges for micro RNAs and RNA binding proteins, to acting as transcriptional regulators. In accordance with an important role in the normal biology of the cell, perturbations of circRNA expression are now being reported in association with disease. Furthermore, the inherent stability of circRNAs conferred by their circular structure and exonuclease resistance, and their expression in blood and other peripheral tissues in association with endosomes and microvesicles, renders them excellent candidates as disease biomarkers. In this review, we explore the state of knowledge on this exciting class of transcripts in regulating gene expression and discuss their emerging role in health and disease. PMID:29182528

The Circular RNA Interacts with STAT3, Increasing Its Nuclear Translocation and Wound Repair by Modulating Dnmt3a and miR-17 Function.

PubMed

Yang, Zhen-Guo; Awan, Faryal Mehwish; Du, William W; Zeng, Yan; Lyu, Juanjuan; Wu, De; Gupta, Shaan; Yang, Weining; Yang, Burton B

2017-09-06

Delayed or impaired wound healing is a major health issue worldwide, especially in patients with diabetes and atherosclerosis. Here we show that expression of the circular RNA circ-Amotl1 accelerated healing process in a mouse excisional wound model. Further studies showed that ectopic circ-Amotl1 increased protein levels of Stat3 and Dnmt3a. The increased Dnmt3a then methylated the promoter of microRNA miR-17, decreasing miR-17-5p levels but increasing fibronectin expression. We found that Stat3, similar to Dnmt3a and fibronectin, was a target of miR-17-5p. Decreased miR-17-5p levels would increase expression of fibronectin, Dnmt3a, and Stat3. All of these led to increased cell adhesion, migration, proliferation, survival, and wound repair. Furthermore, we found that circ-Amotl1 not only increased Stat3 expression but also facilitated Stat3 nuclear translocation. Thus, the ectopic expressed circ-Amotl1 and Stat3 were mainly translocated to nucleus. In the presence of circ-Amotl1, Stat3 interacted with Dnmt3a promoter with increased affinity, facilitating Dnmt3a transcription. Ectopic application of circ-Amotl1 accelerating wound repair may shed light on skin wound healing clinically. Copyright © 2017. Published by Elsevier Inc.

Inducing circular RNA formation using the CRISPR endoribonuclease Csy4.

PubMed

Borchardt, Erin K; Meganck, Rita M; Vincent, Heather A; Ball, Christopher B; Ramos, Silvia B V; Moorman, Nathaniel J; Marzluff, William F; Asokan, Aravind

2017-05-01

Circular RNAs (circRNAs) are highly stable, covalently closed RNAs that are regulated in a spatiotemporal manner and whose functions are largely unknown. These molecules have the potential to be incorporated into engineered systems with broad technological implications. Here we describe a switch for inducing back-splicing of an engineered circRNA that relies on the CRISPR endoribonuclease, Csy4, as an activator of circularization. The endoribonuclease activity and 3' end-stabilizing properties of Csy4 are particularly suited for this task. Coexpression of Csy4 and the circRNA switch allows for the removal of downstream competitive splice sites and stabilization of the 5' cleavage product. This subsequently results in back-splicing of the 5' cleavage product into a circRNA that can translate a reporter protein from an internal ribosomal entry site (IRES). Our platform outlines a straightforward approach toward regulating splicing and could find potential applications in synthetic biology as well as in studying the properties of different circRNAs. © 2017 Borchardt et al.; Published by Cold Spring Harbor Laboratory Press for the RNA Society.

The Continuous Intercomparison of Radiation Codes (CIRC): Phase I Cases

NASA Technical Reports Server (NTRS)

Oreopoulos, Lazaros; Mlawer, Eli; Delamere, Jennifer; Shippert, Timothy; Turner, David D.; Miller, Mark A.; Minnis, Patrick; Clough, Shepard; Barker, Howard; Ellingson, Robert

2007-01-01

CIRC aspires to be the successor to ICRCCM (Intercomparison of Radiation Codes in Climate Models). It is envisioned as an evolving and regularly updated reference source for GCM-type radiative transfer (RT) code evaluation with the principle goal to contribute in the improvement of RT parameterizations. CIRC is jointly endorsed by DOE's Atmospheric Radiation Measurement (ARM) program and the GEWEX Radiation Panel (GRP). CIRC's goal is to provide test cases for which GCM RT algorithms should be performing at their best, i.e, well characterized clear-sky and homogeneous, overcast cloudy cases. What distinguishes CIRC from previous intercomparisons is that its pool of cases is based on observed datasets. The bulk of atmospheric and surface input as well as radiative fluxes come from ARM observations as documented in the Broadband Heating Rate Profile (BBHRP) product. BBHRP also provides reference calculations from AER's RRTM RT algorithms that can be used to select the most optimal set of cases and to provide a first-order estimate of our ability to achieve radiative flux closure given the limitations in our knowledge of the atmospheric state.

Analyzing the interactions of mRNAs, miRNAs, lncRNAs and circRNAs to predict competing endogenous RNA networks in glioblastoma.

PubMed

Yuan, Yang; Jiaoming, Li; Xiang, Wang; Yanhui, Liu; Shu, Jiang; Maling, Gou; Qing, Mao

2018-05-01

Cross-talk between competitive endogenous RNAs (ceRNAs) may play a critical role in revealing potential mechanisms of tumor development and physiology. Glioblastoma is the most common type of malignant primary brain tumor, and the mechanisms of tumor genesis and development in glioblastoma are unclear. Here, to investigate the role of non-coding RNAs and the ceRNA network in glioblastoma, we performed paired-end RNA sequencing and microarray analyses to obtain the expression profiles of mRNAs, lncRNAs, circRNAs and miRNAs. We identified that the expression of 501 lncRNAs, 1999 mRNAs, 2038 circRNAs and 143 miRNAs were often altered between glioblastoma and matched normal brain tissue. Gene ontology and Kyoto Encyclopedia of Genes and Genomes pathway analyses were performed on these differentially expressed mRNAs and miRNA-mediated target genes of lncRNAs and circRNAs. Furthermore, we used a multi-step computational framework and several bioinformatics methods to construct a ceRNA network combining mRNAs, miRNAs, lncRNAs and circRNA, based on co-expression analysis between the differentially expressed RNAs. We identified that plenty of lncRNAs, CircRNAs and their downstream target genes in the ceRNA network are related to glutamatergic synapse, suggesting that glutamate metabolism is involved in glioma biological functions. Our results will accelerate the understanding of tumorigenesis, cancer progression and even therapeutic targeting in glioblastoma.

circ-SHKBP1 Regulates the Angiogenesis of U87 Glioma-Exposed Endothelial Cells through miR-544a/FOXP1 and miR-379/FOXP2 Pathways.

PubMed

He, Qianru; Zhao, Lini; Liu, Yunhui; Liu, Xiaobai; Zheng, Jian; Yu, Hai; Cai, Heng; Ma, Jun; Liu, Libo; Wang, Ping; Li, Zhen; Xue, Yixue

2018-03-02

Circular RNAs (circRNAs) are a type of endogenous non-coding RNAs, which have been considered to mediate diverse tumorigenesis including angiogenesis. The present study aims to elucidate the potential role and molecular mechanism of circ-SHKBP1 in regulating the angiogenesis of U87 glioma-exposed endothelial cells (GECs). The expression of circ-SHKBP1, but not linear SHKBP1, was significantly upregulated in GECs compared with astrocyte-exposed endothelial cells (AECs). circ-SHKBP1 knockdown inhibited the viability, migration, and tube formation of GECs dramatically. The expressions of miR-379/miR-544a were downregulated in GECs, and circ-SHKBP1 functionally targeted miR-544a/miR-379 in an RNA-induced silencing complex (RISC) manner. Dual-luciferase reporter assay demonstrated that forkhead box P1/P2 (FOXP1/FOXP2) were targets of miR-544a/miR-379. The expressions of FOXP1/FOXP2 were upregulated in GECs, and silencing of FOXP1/FOXP2 inhibited the viability, migration, and tube formation of GECs. Meanwhile, FOXP1/FOXP2 promoted angiogenic factor with G patch and FHA domains 1 (AGGF1) expression at the transcriptional level. Furthermore, knockdown of AGGF1 suppressed the viability, migration, and tube formation of GECs via phosphatidylinositol 3-kinase (PI3K)/AKT and extracellular signal-regulated kinase (ERK)1/2 pathways. Taken together, the present study demonstrated that circ-SHKBP1 regulated the angiogenesis of GECs through miR-544a/FOXP1 and miR-379/FOXP2 pathways, and these findings might provide a potential target and effective strategy for combined therapy of gliomas. Copyright © 2017 The Authors. Published by Elsevier Inc. All rights reserved.

The Effects of Basal Insulin Suspension at the Start of Exercise on Blood Glucose Levels During Continuous Versus Circuit-Based Exercise in Individuals with Type 1 Diabetes on Continuous Subcutaneous Insulin Infusion.

PubMed

Zaharieva, Dessi; Yavelberg, Loren; Jamnik, Veronica; Cinar, Ali; Turksoy, Kamuran; Riddell, Michael C

2017-06-01

Exercise causes glycemic disturbances in individuals with type 1 diabetes (T1D). Continuous moderate-intensity aerobic exercise (CON) generally lowers blood glucose (BG) levels and often leads to hypoglycemia. In comparison, circuit-based exercise (CIRC) may attenuate the drop in BG. The goal of this study is to contrast the effects of basal insulin suspension at the onset of two different forms of exercise (CON vs. CIRC). Twelve individuals (six men and six women) with T1D on insulin pump therapy were recruited for the study. All participants completed a maximal aerobic fitness test and two 40-min exercise sessions, consisting of either continuous treadmill walking or a circuit workout. Basal insulin infusion was stopped at the onset of exercise and resumed in recovery. After providing an initial reference value, volunteers were blinded to their [BG] and were asked to estimate their levels during exercise. Oxygen consumption (47.5 ± 7.5 vs. 54.5 ± 13.5 mL·kg -1 ·min -1 , P = 0.03) and heart rate (122 ± 20 vs. 144 ± 20 bpm, P = 0.003) were lower in CON vs. CIRC. Despite the lower workload, BG levels dropped more with CON vs. CIRC (delta BG = -3.8 ± 1.5 vs. -0.5 ± 3.0 mmol/L for CON vs. CIRC, respectively, P = 0.001). Participants were able to estimate their BG more accurately during CON (r = 0.83) vs. CIRC (r = 0.33) based on a regression analysis. Despite a lower intensity of exercise, with full basal insulin suspension at the start of exercise, CON results in a larger drop in BG vs. CIRC. These findings have implications for single hormone-based artificial pancreas development for exercise. While this study does not negate the importance of frequent capillary BG monitoring during exercise, it does suggest that if persons are knowledgeable about their pre-exercise BG levels, they can accurately perceive the changes in BG during CON, but not during CIRC.

Dynamic Organization of lncRNA and Circular RNA Regulators Collectively Controlled Cardiac Differentiation in Humans.

PubMed

Li, Yongsheng; Zhang, Jinwen; Huo, Caiqin; Ding, Na; Li, Junyi; Xiao, Jun; Lin, Xiaoyu; Cai, Benzhi; Zhang, Yunpeng; Xu, Juan

2017-10-01

Advances in developmental cardiology have increased our understanding of the early aspects of heart differentiation. However, understanding noncoding RNA (ncRNA) transcription and regulation during this process remains elusive. Here, we constructed transcriptomes for both long noncoding RNAs (lncRNAs) and circular RNAs (circRNAs) in four important developmental stages ranging from early embryonic to cardiomyocyte based on high-throughput sequencing datasets, which indicate the high stage-specific expression patterns of two ncRNA types. Additionally, higher similarities of samples within each stage were found, highlighting the divergence of samples collected from distinct cardiac developmental stages. Next, we developed a method to identify numerous lncRNA and circRNA regulators whose expression was significantly stage-specific and shifted gradually and continuously during heart differentiation. We inferred that these ncRNAs are important for the stages of cardiac differentiation. Moreover, transcriptional regulation analysis revealed that the expression of stage-specific lncRNAs is controlled by known key stage-specific transcription factors (TFs). In addition, circRNAs exhibited dynamic expression patterns independent from their host genes. Functional enrichment analysis revealed that lncRNAs and circRNAs play critical roles in pathways that are activated specifically during heart differentiation. We further identified candidate TF-ncRNA-gene network modules for each differentiation stage, suggesting the dynamic organization of lncRNAs and circRNAs collectively controlled cardiac differentiation, which may cause heart-related diseases when defective. Our study provides a foundation for understanding the dynamic regulation of ncRNA transcriptomes during heart differentiation and identifies the dynamic organization of novel key lncRNAs and circRNAs to collectively control cardiac differentiation. Copyright © 2017. Published by Elsevier B.V.

Quantifying circular RNA expression from RNA-seq data using model-based framework.

PubMed

Li, Musheng; Xie, Xueying; Zhou, Jing; Sheng, Mengying; Yin, Xiaofeng; Ko, Eun-A; Zhou, Tong; Gu, Wanjun

2017-07-15

Circular RNAs (circRNAs) are a class of non-coding RNAs that are widely expressed in various cell lines and tissues of many organisms. Although the exact function of many circRNAs is largely unknown, the cell type-and tissue-specific circRNA expression has implicated their crucial functions in many biological processes. Hence, the quantification of circRNA expression from high-throughput RNA-seq data is becoming important to ascertain. Although many model-based methods have been developed to quantify linear RNA expression from RNA-seq data, these methods are not applicable to circRNA quantification. Here, we proposed a novel strategy that transforms circular transcripts to pseudo-linear transcripts and estimates the expression values of both circular and linear transcripts using an existing model-based algorithm, Sailfish. The new strategy can accurately estimate transcript expression of both linear and circular transcripts from RNA-seq data. Several factors, such as gene length, amount of expression and the ratio of circular to linear transcripts, had impacts on quantification performance of circular transcripts. In comparison to count-based tools, the new computational framework had superior performance in estimating the amount of circRNA expression from both simulated and real ribosomal RNA-depleted (rRNA-depleted) RNA-seq datasets. On the other hand, the consideration of circular transcripts in expression quantification from rRNA-depleted RNA-seq data showed substantial increased accuracy of linear transcript expression. Our proposed strategy was implemented in a program named Sailfish-cir. Sailfish-cir is freely available at https://github.com/zerodel/Sailfish-cir . tongz@medicine.nevada.edu or wanjun.gu@gmail.com. Supplementary data are available at Bioinformatics online. © The Author (2017). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com

Fissuration en relaxation des aciers inoxydables austénitiques au voisinage des soudures

NASA Astrophysics Data System (ADS)

Auzoux, Q.; Allais, L.; Gourgues, A. F.; Pineau, A.

2003-03-01

Des fissures intergranulaires peuvent se développer au voisinage des soudures des aciers inoxydables austénitiques lorsqu'ils sont réchauffés dans le domaine de température compris entre 500^{circ}C et 700^{circ}C. A ces températures, les contraintes résiduelles post-soudage se relaxent par déformation viscoplastique. Il peut arriver que ces zones proches de la soudure soient tellement fragiles, qu'elles ne puissent accommoder cette faible déformation. Afin de préciser quelles peuvent être les modifications microstructurales qui conduisent à une telle fragilisation, on a examiné les microstructures de ces zones et révélé ainsi un écrouissage résiduel, responsable d'une forte élévation de la dureté. On a pu reproduire par hypertrempe puis laminage entre 400^{circ}C et 600^{circ}C une microstructure similaire. Des essais mécaniques (traction, fluage, relaxation, sur éprouvettes lisses et pré-fissurées) ont été réalisés à 550^{circ}C et à 600^{circ}C sur ces zones affectées simulées et sur un état de référence hypertrempé. Ils ont montré que l'écrouissage diminuait la ductilité dans le domaine de rupture intergranulaire, sans modifier qualitativement le mécanisme d'endommagement. Pendant la pré-déformation les incompatibilités de déformation entre grains conduiraient à l'existence de contraintes locales élevées qui favoriseraient la germination des cavités intergranulaires.

The Climate Impacts Research Consortium: Lessons Learned from the Evaluation of Co-production projects

NASA Astrophysics Data System (ADS)

Sokolovska, I.; Andrepont, J. A.; Lach, D.

2017-12-01

The Pacific Northwest Climate Impacts Research Consortium (CIRC) is a climate-science-to-climate-action team funded by the National Oceanic and Atmospheric Administration (NOAA), member of NOAA's Regional Integrated Sciences and Assessments (RISA) program. The internal evaluation of the last 6 years of CIRC's work focused on the co-production of knowledge process. The evaluation was based on CIRC's Reflection and Logic model and used a mixed methods design. During regular monthly meetings in 2014/15, all CIRC PIs reflected on the co-production process and presented their evaluation of the projects they worked on. Additionally, we conducted semi-structured interviews with CIRC participants, purposefully targeting key informants. The Climate Impacts Research Consortium teams also administered surveys to assess participants' experiences of the coproduction process as they were engaging in it. Identifying and cultivating an informant from the local stakeholder group with deep, accessible roots within the target community can lead to better coproduction results than having to build those relationships from naught. Across projects, most participants agreed that the project increased their understanding of their area's hazards and by the end of the project most participants were confident the project would produce useful results for themselves. Finally, most participants intended to share what they had learned from this experience with their colleagues and we found that co-production built capacities necessary for communities to incorporate climate change in discussions even after the end of CIRC's participation. During the projects, the involvement of non-traditional participants along with experts was critical to success and a lot of work and preparation needs to be put into the planning of any co-production meeting to overcome various barriers to communication and build trust.

Antiviral Immunity and Circular RNA: No End in Sight.

PubMed

Cadena, Cristhian; Hur, Sun

2017-07-20

In this issue of Molecular Cell, two papers by Chen et al. (2017) and Li et al. (2017) describe new insights into circRNA biogenesis and function, connecting circRNAs to innate immune pathways. Copyright © 2017 Elsevier Inc. All rights reserved.

CIRCE: The Canarias InfraRed Camera Experiment for the Gran Telescopio Canarias

NASA Astrophysics Data System (ADS)

Eikenberry, Stephen S.; Charcos, Miguel; Edwards, Michelle L.; Garner, Alan; Lasso-Cabrera, Nestor; Stelter, Richard D.; Marin-Franch, Antonio; Raines, S. Nicholas; Ackley, Kendall; Bennett, John G.; Cenarro, Javier A.; Chinn, Brian; Donoso, H. Veronica; Frommeyer, Raymond; Hanna, Kevin; Herlevich, Michael D.; Julian, Jeff; Miller, Paola; Mullin, Scott; Murphey, Charles H.; Packham, Chris; Varosi, Frank; Vega, Claudia; Warner, Craig; Ramaprakash, A. N.; Burse, Mahesh; Punnadi, Sunjit; Chordia, Pravin; Gerarts, Andreas; Martín, Héctor De Paz; Calero, María Martín; Scarpa, Riccardo; Acosta, Sergio Fernandez; Sánchez, William Miguel Hernández; Siegel, Benjamin; Pérez, Francisco Francisco; Martín, Himar D. Viera; Losada, José A. Rodríguez; Nuñez, Agustín; Tejero, Álvaro; González, Carlos E. Martín; Rodríguez, César Cabrera; Sendra, Jordi Molgó; Rodriguez, J. Esteban; Cáceres, J. Israel Fernádez; García, Luis A. Rodríguez; Lopez, Manuel Huertas; Dominguez, Raul; Gaggstatter, Tim; Lavers, Antonio Cabrera; Geier, Stefan; Pessev, Peter; Sarajedini, Ata; Castro-Tirado, A. J.

The Canarias InfraRed Camera Experiment (CIRCE) is a near-infrared (1-2.5μm) imager, polarimeter and low-resolution spectrograph operating as a visitor instrument for the Gran Telescopio Canarias (GTC) 10.4-m telescope. It was designed and built largely by graduate students and postdocs, with help from the University of Florida (UF) astronomy engineering group, and is funded by the UF and the US National Science Foundation. CIRCE is intended to help fill the gap in near-infrared capabilities prior to the arrival of Especrografo Multiobjecto Infra-Rojo (EMIR) to the GTC and will also provide the following scientific capabilities to compliment EMIR after its arrival: high-resolution imaging, narrowband imaging, high-time-resolution photometry, imaging polarimetry, and low resolution spectroscopy. In this paper, we review the design, fabrication, integration, lab testing, and on-sky performance results for CIRCE. These include a novel approach to the opto-mechanical design, fabrication, and alignment.

Regional assessment of Climate change impacts in the Mediterranean: the CIRCE project

NASA Astrophysics Data System (ADS)

Iglesias, A.

2011-12-01

The CIRCE project has developed for the first time an assessment of the climate change impacts in the Mediterranean area. The objectives of the project are: to predict and to quantify physical impacts of climate change in the Mediterranean area; to evaluate the consequences of climate change for the society and the economy of the populations located in the Mediterranean area; to develop an integrated approach to understand combined effects of climate change; and to identify adaptation and mitigation strategies in collaboration with regional stakeholders. The CIRCE Project, coordinated by the Instituto Nazionale di Geofisca e Vulcanologia, started on 1st April 2007 and ended in a policy conference in Rome on June 2011. CIRCE involves 64 partners from Europe, Middle East and North Africa working together to evaluate the best strategies of adaptation to the climate change in the Mediterranean basin. CIRCE wants to understand and to explain how climate will change in the Mediterranean area bringing together the natural sciences community and social community in a new integrated and comprehensive way. The project has investigated how global and Mediterranean climates interact, how the radiative properties of the atmosphere and the radiative fluxes vary, the interaction between cloudiness and aerosol, the modifications in the water cycle. Recent observed modifications in the climate variables and detected trends will be compared. The economic and social consequences of climate change are evaluated by analysing direct impacts on migration, tourism and energy markets together with indirect impacts on the economic system. CIRCE has produced results about the consequences on agriculture, forests and ecosystems, human health and air quality. The variability of extreme events in the future scenario and their impacts is also assessed. A rigorous common framework, including a set of quantitative indicators developed specifically for the Mediterranean environment was be developed and used in collaboration with regional stakeholders. Possible adaptation and mitigation strategies were be identified. The integrated results discussed by the project CIRCE will be presented in the first Regional Assessment of Climate Change in the Mediterranean area, to be published in September 2011 and will make a powerful contribution to the definition and evaluation of adaptation and mitigation strategies.

Best packing of identical helices

NASA Astrophysics Data System (ADS)

Huh, Youngsik; Hong, Kyungpyo; Kim, Hyoungjun; No, Sungjong; Oh, Seungsang

2016-10-01

In this paper we prove the unique existence of a ropelength-minimizing conformation of the θ-spun double helix in a mathematically rigorous way, and find the minimal ropelength {{{Rop}}}* (θ )=-\\tfrac{8π }{t} where t is the unique solution in [-θ ,0] of the equation 2-2\\cos (t+θ )={t}2. Using this result, the pitch angles of the standard, triple and quadruple helices are around 39.3771^\\circ , 42.8354^\\circ and 43.8351^\\circ , respectively, which are almost identical with the approximated pitch angles of the zero-twist structures previously known by Olsen and Bohr. We also find the ropelength of the standard N-helix.

Detecting circular RNAs: bioinformatic and experimental challenges

PubMed Central

Szabo, Linda; Salzman, Julia

2017-01-01

The pervasive expression of circular RNAs (circRNAs) is a recently discovered feature of gene expression in highly diverged eukaryotes. Numerous algorithms that are used to detect genome-wide circRNA expression from RNA sequencing (RNA-seq) data have been developed in the past few years, but there is little overlap in their predictions and no clear gold-standard method to assess the accuracy of these algorithms. We review sources of experimental and bioinformatic biases that complicate the accurate discovery of circRNAs and discuss statistical approaches to address these biases. We conclude with a discussion of the current experimental progress on the topic. PMID:27739534

Detection and Reconstruction of Circular RNAs from Transcriptomic Data.

PubMed

Zheng, Yi; Zhao, Fangqing

2018-01-01

Recent studies have shown that circular RNAs (circRNAs) are a novel class of abundant, stable, and ubiquitous noncoding RNA molecules in eukaryotic organisms. Comprehensive detection and reconstruction of circRNAs from high-throughput transcriptome data is an initial step to study their biogenesis and function. Several tools have been developed to deal with this issue, but they require many steps and are difficult to use. To solve this problem, we provide a protocol for researchers to detect and reconstruct circRNA by employing CIRI2, CIRI-AS, and CIRI-full. This protocol can not only simplify the usage of above tools but also integrate their results.

Temperature dependence of yields from multi-foil SPES target

NASA Astrophysics Data System (ADS)

Corradetti, S.; Biasetto, L.; Manzolaro, M.; Scarpa, D.; Andrighetto, A.; Carturan, S.; Prete, G.; Zanonato, P.; Stracener, D. W.

2011-10-01

The temperature dependence of neutron-rich isotope yields was studied within the framework of the HRIBF-SPES Radioactive Ion Beams (RIB) project. On-line release measurements of fission fragments from a uranium carbide target at ensuremath 1600 {}^{circ}C , ensuremath 1800 {}^{circ}C and ensuremath 2000 {}^{circ}C were performed at ORNL (USA). The fission reactions were induced by a 40MeV proton beam accelerated into a uranium carbide target coupled to a plasma ion source. The experiments allowed for tests of performance of the SPES multi-foil target prototype loaded with seven UC2/graphite discs (ratio C/ U = 4 with density about 4g/cm3.

Numerical and Experimental Studies of Transient Natural Convection with Density Inversion

NASA Astrophysics Data System (ADS)

Mizutani, Satoru; Ishiguro, Tatsuji; Kuwahara, Kunio

1996-11-01

In beer manufacturing process, we cool beer in storage tank down from 8 to -1 ^circC. The understanding of cooling process is very important for designing a fermentation tank. In this paper, flow and temperature distribution in a rectangular enclosure was studied. The unsteady incompressible Navier-Stokes equations were integrated by using the multi-directional third-order upwind finite difference method(MUFDM). A parabolic density-temperature relationship was assumed in water which has the maximum density at 3.98 ^circC. Cooling down from 8 to 0 ^circC of water in 10 cm cubical enclosure (Ra=10^7) was numerically done by keeping a vertical side wall at 0 ^circC. Vortex was caused by density inversion of water which was cooled bellow 4 ^circC, and it rose near the cold wall and reached water surface after 33 min from the start of cooling. Finally, cooling proceeded from upper surface. At the aim of verifing the accuracy of the numerical result, temperature distribution under the same condition was experimentally visualized using temperature sensitive liquid crystal. The results will be presented by using video movie. Comparison between the computation and the experiment showed that the present direct simulation based on the MUFDM was powerful tool for the understanding of the natural convection with density inversion and the application of cooling phenomenon to the design of beer storage tanks.

Interconnecting sensors and people to improve the knowledge and sustainable management in rural and alpine environment: the CIRCE project

NASA Astrophysics Data System (ADS)

Cavallo, Eugenio; Biddoccu, Marcella; Bagagiolo, Giorgia; De Marziis, Massimo; Gaia Forni, Emanuela; Alemanno, Laura; Ferraris, Stefano; Canone, Davide; Previati, Maurizio; Turconi, Laura; Arattano, Massimo; Coviello, Velio

2016-04-01

Environmental sensor monitoring is continuously developing, both in terms of quantity (i.e. measurement sites), and quality (i.e. technological innovation). Environmental monitoring is carried out by either public or private entities for their own specific purposes, such as scientific research, civil protection, support to industrial and agricultural activities, services for citizens, security, education, and information. However, the acquired dataset could be cross-appealing, hence, being interesting for purposes that diverted from their main intended use. The CIRCE project (Cooperative Internet-of-Data Rural-alpine Community Environment) aimed to gather, manage, use and distribute data obtained from sensors and from people, in a multipurpose approach. The CIRCE project was selected within a call for tender launched by Piedmont Region (in collaboration with CSI Piemonte) in order to improve the digital ecosystem represented by YUCCA, an open source platform oriented to the acquisition, sharing and reuse of data resulting both from real-time and on-demand applications. The partnership of the CIRCE project was made by scientific research bodies (IMAMOTER-CNR, IRPI-CNR, DIST) together with SMEs involved in environmental monitoring and ICT sectors (namely: 3a srl, EnviCons srl, Impresa Verde Cuneo srl, and NetValue srl). Within the project a shared network of agro-meteo-hydrological sensors has been created. Then a platform and its interface for collection, management and distribution of data has been developed. The CIRCE network is currently constituted by a total amount of 171 sensors remotely connected and originally belonging to different networks. They are settled-up in order to monitor and investigate agro-meteo-hydrological processes in different rural and mountain areas of Piedmont Region (NW-Italy), including some very sensitive locations, but difficult to access. Each sensor network differs from each other, in terms of purpose of monitoring, monitored parameters, instrumentation, system architecture, data acquisition and communication processes. In addition to real-time data, the CIRCE database includes many historical datasets, which were uniformed to the adopted database architecture. Such datasets were collected before the implementation of the project both from the connected sensors, and from sensors no longer active. In order to attempt to reduce the gap between the research community and end users, specific APP for smartphones and tablets were created. Such tools facilitate the access and the enrichment of the CIRCE database both for the hydrological section (APP IDRO) than for the agro-meteorological section (APP AGRO). Non-specialists may participate in enrichment of the sensor punctual data with sending qualitative and quantitative information about the observed processes (e.g. watercourse levels, erosion processes, presence of pathogens, damage pictures, etc.). The territorial investigation and the data acquisition also involved groups of citizens (namely farmers, technician and volunteers), that were engaged in creating and testing the informatics tools, according with the "Living Lab" approach. Finally, the CIRCE platform was interfaced with the YUCCA platform, allowing an open access to the CIRCE dataset and its integration in the SmartDataNet system of the Regione Piemonte public administration. The CIRCE project was funded by EU FESR, by Italian Government and Regione Piemonte within the programme Regione Piemonte POR/FESR 2007-2013.

1964 Annual Typhoon Report

DTIC Science & Technology

1995-01-01

15/11 17’/13 -. 15/10 -25/-. 18/13 CIRC 25 MI DLA”OPENE CIRc 20MIDIAOPENN T’ERUE OVAL 20 MI DlilE- WAKIS OPENN OVAL 20 MI DIA E-WAXIS 10MI N-S OPENN...20 2W4 2W . . . . . . . . . . . ,,, . . . . _., . , ~ wAKI I . “ 24s, . . .. . . . .-., . ,. -.. . , l“”””” 15w..- -.. . . 16w

46 CFR 162.161-2 - Incorporation by reference.

Code of Federal Regulations, 2012 CFR

2012-10-01

.../Circ. 848) (June 4, 2008), (“MSC.1/Circ. 1267”), IBR approved for § 162.161-6. (c) National Fire...: SPECIFICATIONS AND APPROVAL ENGINEERING EQUIPMENT Fixed Clean Agent Fire Extinguishing Systems § 162.161-2... is available from the sources listed below. It is also available for inspection at the National...

Circular RNA alterations are involved in resistance to avian leukosis virus subgroup-J-induced tumor formation in chickens

USDA-ARS?s Scientific Manuscript database

Avian leukosis virus subgroup (ALV-J) is an oncogenic neoplasm-inducing retrovirus that causes significant economic losses in the poultry industry. Recent studies have demonstrated circular RNAs (circRNAs) are implicated in pathogenic processes; however, no research has indicated circRNAs are invol...

Circular RNA HIPK2 regulates astrocyte activation via cooperation of autophagy and ER stress by targeting MIR124-2HG.

PubMed

Huang, Rongrong; Zhang, Yuan; Han, Bing; Bai, Ying; Zhou, Rongbin; Gan, Guangming; Chao, Jie; Hu, Gang; Yao, Honghong

2017-10-03

Circular RNAs are a subclass of noncoding RNAs in mammalian cells; however, whether these RNAs are involved in the regulation of astrocyte activation is largely unknown. Here, we have shown that the circular RNA HIPK2 (circHIPK2) functions as an endogenous microRNA-124 (MIR124-2HG) sponge to sequester MIR124-2HG and inhibit its activity, resulting in increased sigma non-opioid intracellular receptor 1 (SIGMAR1/OPRS1) expression. Knockdown of circHIPK2 expression significantly inhibited astrocyte activation via the regulation of autophagy and endoplasmic reticulum (ER) stress through the targeting of MIR124-2HG and SIGMAR1. These findings were confirmed in vivo in mouse models, as microinjection of a circHIPK2 siRNA lentivirus into mouse hippocampi inhibited astrocyte activation induced by methamphetamine or lipopolysaccharide (LPS). These findings provide novel insights regarding the specific contribution of circHIPK2 to astrocyte activation in the context of drug abuse as well as for the treatment of a broad range of neuroinflammatory disorders.

Growth condition dependence of photoluminescence polarization in (100) GaAs/AlGaAs quantum wells at room temperature

DOE Office of Scientific and Technical Information (OSTI.GOV)

Iba, Satoshi; Saito, Hidekazu; Yuasa, Shinji

2015-08-28

We conducted systematic measurements on the carrier lifetime (τ{sub c}), spin relaxation time (τ{sub s}), and circular polarization of photoluminescence (P{sub circ}) in (100) GaAs/AlGaAs multiple quantum wells grown by molecular beam epitaxy (MBE). The τ{sub c} values are strongly affected by MBE growth conditions (0.4–9 ns), whereas the τ{sub s} are almost constant at about 0.13 ns. The result suggests that spin detection efficiency [τ{sub s}/(τ{sub c} + τ{sub s})], which is expected to be proportional to a steady-state P{sub circ}, is largely dependent on growth condition. We confirmed that the P{sub circ} has similar dependence on growth condition to those of τ{submore » s}/(τ{sub c} + τ{sub s}) values. The study thus indicates that choosing the appropriate growth condition of the QW is indispensable for obtaining a high P{sub circ} from a spin-polarized light-emitting diode (spin-LED)« less

Identifying circRNA-associated-ceRNA networks in the hippocampus of Aβ1-42-induced Alzheimer's disease-like rats using microarray analysis

PubMed Central

Wang, Zhe; Xu, Panpan; Chen, Biyue; Zhang, Zheyu; Zhang, Chunhu; Zhan, Qiong; Huang, Siqi; Xia, Zi-an

2018-01-01

Alzheimer’s disease (AD) is the most common form of dementia worldwide. Accumulating evidence indicates that non-coding RNAs are strongly implicated in AD-associated pathophysiology. However, the role of these ncRNAs remains largely unknown. In the present study, we used microarray analysis technology to characterize the expression patterns of circular RNAs (circRNAs), microRNAs (miRNAs), and mRNAs in hippocampal tissue from Aβ1-42-induced AD model rats, to integrate interaction data and thus provide novel insights into the mechanisms underlying AD. A total of 555 circRNAs, 183 miRNAs and 319 mRNAs were identified to be significantly dysregulated (fold-change ≥ 2.0 and p-value < 0.05) in the hippocampus of AD rats. Quantitative real-time polymerase chain reaction (qRT-PCR) was then used to validate the expression of randomly-selected circRNAs, miRNAs and mRNAs. Next, GO and KEGG pathway analyses were performed to further investigate ncRNAs biological functions and potential mechanisms. In addition, we constructed circRNA-miRNA and competitive endogenous RNA (ceRNA) regulatory networks to determine functional interactions between ncRNAs and mRNAs. Our results suggest the involvement of different ncRNA expression patterns in the pathogenesis of AD. Our findings provide a novel perspective for further research into AD pathogenesis and might facilitate the development of novel therapeutics targeting ncRNAs. PMID:29706607

Whole-Transcriptome Analysis of CD133+CD144+ Cancer Stem Cells Derived from Human Laryngeal Squamous Cell Carcinoma Cells.

PubMed

Wu, Yongyan; Zhang, Yuliang; Niu, Min; Shi, Yong; Liu, Hongliang; Yang, Dongli; Li, Fei; Lu, Yan; Bo, Yunfeng; Zhang, Ruiping; Li, Zhenyu; Luo, Hongjie; Cui, Jiajia; Sang, Jiangwei; Xiang, Caixia; Gao, Wei; Wen, Shuxin

2018-06-27

CD133+CD44+ cancer stem cells previously isolated from laryngeal squamous cell carcinoma (LSCC) cell lines showed strong malignancy and tumorigenicity. However, the molecular mechanism underlying the enhanced malignancy remained unclear. Cell proliferation assay, spheroid-formation experiment, RNA sequencing (RNA-seq), miRNA-seq, bioinformatic analysis, quantitative real-time PCR, migration assay, invasion assay, and luciferase reporter assay were used to identify differentially expressed mRNAs, lncRNAs, circRNAs and miRNAs, construct transcription regulatory network, and investigate functional roles and mechanism of circRNA in CD133+CD44+ laryngeal cancer stem cells. Differentially expressed genes in TDP cells were mainly enriched in the biological processes of cell differentiation, regulation of autophagy, negative regulation of cell death, regulation of cell growth, response to hypoxia, telomere maintenance, cellular response to gamma radiation, and regulation of apoptotic signaling, which are closely related to the malignant features of tumor cells. We constructed the regulatory network of differentially expressed circRNAs, miRNAs and mRNAs. qPCR findings for the expression of key genes in the network were consistent with the sequencing data. Moreover, our data revealed that circRNA hg19_circ_0005033 promotes proliferation, migration, invasion, and chemotherapy resistance of laryngeal cancer stem cells. This study provides potential biomarkers and targets for LSCC diagnosis and therapy, and provide important evidences for the heterogeneity of LSCC cells at the transcription level. © 2018 The Author(s). Published by S. Karger AG, Basel.

Transverse Quark Spin Effects in SIDIS and Drell Yan Scattering

NASA Astrophysics Data System (ADS)

Gamberg, Leonard

2006-10-01

The connection between quark orbital angular momentum and final state interactions for transversely polarized quarks in unpolarized hadrons suggests significant azimuthal asymmetries in pion production in semi-inclusive deep inelastic scattering (SIDIS) (e p->e^'X π) as well as in di- lepton production in Drell Yan (p p->&+circ;&-circ;X and &-circ;p->&+circ;&-circ;X) scattering. When transverse momentum of the reaction, PT is on the order of or less than λqcd, that is PT˜kT where kT is intrinsic transverse quark momentum, these effects are characterized in term of naive time reversal odd (so called T-odd) transverse momentum dependent (TMD) parton distribution and fragmentation functions. At these moderate transverse momentum scales we estimate the size of the 2φ azimuthal asymmetry in SIDIS and Drell Yan scattering in the parton spectator framework. In the former case we consider this so called ``Boer-Mulders'' effect for a proposed experiment at the upgraded CLAS-12 GeV detector at Jefferson LAB. In the latter case we consider this asymmetry for proton anti-proton collider, as well as π nucleon fixed target experiments. We also consider competing contributions to these asymmetries from perturbative QCD (pQCD) contributions which emerge when PT> λqcd. Evidence of a strong dependence on transverse momentum would indicate the presence of T-odd structures in unpolarized SIDIS and Drell Yan scattering, implying that transversity properties of the nucleon can be accessed without invoking beam or target polarization.

Identifying circRNA-associated-ceRNA networks in the hippocampus of Aβ1-42-induced Alzheimer's disease-like rats using microarray analysis.

PubMed

Wang, Zhe; Xu, Panpan; Chen, Biyue; Zhang, Zheyu; Zhang, Chunhu; Zhan, Qiong; Huang, Siqi; Xia, Zi-An; Peng, Weijun

2018-04-27

Alzheimer's disease (AD) is the most common form of dementia worldwide. Accumulating evidence indicates that non-coding RNAs are strongly implicated in AD-associated pathophysiology. However, the role of these ncRNAs remains largely unknown. In the present study, we used microarray analysis technology to characterize the expression patterns of circular RNAs (circRNAs), microRNAs (miRNAs), and mRNAs in hippocampal tissue from Aβ 1-42 -induced AD model rats, to integrate interaction data and thus provide novel insights into the mechanisms underlying AD. A total of 555 circRNAs, 183 miRNAs and 319 mRNAs were identified to be significantly dysregulated (fold-change ≥ 2.0 and p -value < 0.05) in the hippocampus of AD rats. Quantitative real-time polymerase chain reaction (qRT-PCR) was then used to validate the expression of randomly-selected circRNAs, miRNAs and mRNAs. Next, GO and KEGG pathway analyses were performed to further investigate ncRNAs biological functions and potential mechanisms. In addition, we constructed circRNA-miRNA and competitive endogenous RNA (ceRNA) regulatory networks to determine functional interactions between ncRNAs and mRNAs. Our results suggest the involvement of different ncRNA expression patterns in the pathogenesis of AD. Our findings provide a novel perspective for further research into AD pathogenesis and might facilitate the development of novel therapeutics targeting ncRNAs.

Circular RNA cSMARCA5 inhibits growth and metastasis in hepatocellular carcinoma.

PubMed

Yu, Jian; Xu, Qing-Guo; Wang, Zhen-Guang; Yang, Yuan; Zhang, Ling; Ma, Jin-Zhao; Sun, Shu-Han; Yang, Fu; Zhou, Wei-Ping

2018-06-01

In recent years, circular RNAs (circRNAs) have been shown to have critical regulatory roles in cancer biology. However, the contributions of circRNAs to hepatocellular carcinoma (HCC) remain largely unknown. cSMARCA5 (a circRNA derived from exons 15 and 16 of the SMARCA5 gene, hsa_circ_0001445) was identified by RNA-sequencing and validated by quantitative reverse transcription PCR. The role of cSMARCA5 in HCC progression was assessed both in vitro and in vivo. circRNAs in vivo precipitation, luciferase reporter assay, biotin-coupled microRNA capture and fluorescence in situ hybridization were conducted to evaluate the interaction between cSMARCA5 and miR-17-3p/miR-181b-5p. The expression of cSMARCA5 was lower in HCC tissues, because of the regulation of DExH-Box Helicase 9, an abundant nuclear RNA helicase. The downregulation of cSMARCA5 in HCC was significantly correlated with aggressive characteristics and served as an independent risk factor for overall survival and recurrence-free survival in patients with HCC after hepatectomy. Our in vivo and in vitro data indicated that cSMARCA5 inhibits the proliferation and migration of HCC cells. Mechanistically, we found that cSMARCA5 could promote the expression of TIMP3, a well-known tumor suppressor, by sponging miR-17-3p and miR-181b-5p. These results reveal an important role of cSMARCA5 in the growth and metastasis of HCC and provide a fresh perspective on circRNAs in HCC progression. Herein, we studied the role of cSMARCA5, a circular RNA, in hepatocellular carcinoma. Our in vitro and in vivo data showed that cSMARCA5 inhibits the growth and migration of hepatocellular carcinoma cells, making it a potential therapeutic target. Copyright © 2018 European Association for the Study of the Liver. Published by Elsevier B.V. All rights reserved.

Geologic investigation of layered mound of Henry Crater, Mars: Implications for history of ancient hydrological activities in the region

NASA Astrophysics Data System (ADS)

Sarkar, Samarpita; Sinha, Rishitosh Kumar; Banerjee, Debabrata; Vijayan, S.

2016-07-01

Craters around the Schiaparelli Basin (sim460 km diameter; 2.71^circS 16.77^circE) on Mars are distributed in a unique combination that includes infilled craters with mound on their floors. The mounds have preserved intriguing layers in stratigraphy that has exposed pristine sets of geomorphic and geochemical signatures bearing strong implications towards understanding geological history of Mars. With a view to avail the maximum scientific benefit from this unique geological assemblage on Mars, we have carried out remote analysis of stratigraphy of layers exposed over Henry crater's (sim150 km diameter; 10.79^circN 23.45^circE) mound (rising sim2km from floor) to infer the origin and episodes of geological events occurred in the region. Henry crater is situated approximately 500 km northeast of Schiaparelli Basin. Using crater counting technique the age of the topmost surface of the crater mound is found to be sim3.64 Ga since the exposure of this strata post complete infilling. The stratigraphy of consistent and conformable layers in the crater interior acts as a proxy of the long-lived event of sediment deposition in a rather quiescent condition. Distinct layering can be traced across the crater from the mound to the crater wall across the floor. Evidence for differential erosion of deposited materials, wherein local geological setup developed in the different parts of the crater interior is preserved. Using MRO HiRISE & CTX images, distinct spatial distribution of morphological features distributed in stratigraphy is observed that reveals the dominant geological agents behind their formation, viz. temporal hydrological and eolian processes. The morphological features were aided with an understanding of the composition of the exposed sedimentary succession. MRO CRISM based mineralogical investigation reveals diagnostic signature of the hydrated sulfate mineral Kieserite. Based on the thermodynamic properties of Kieserite and apparent lack of desiccation cracks in the scale of observation, it is inferred that the water level inside the crater did not experience fluctuation. Rather on systematic compilation of the mineralogical and morphological data, it is inferred that the mound formation process was gradual and can be correlated with the water level inside the crater at various stages during the recession stage.

Studies of Plasma-Sprayed Alumina

NASA Astrophysics Data System (ADS)

Ilavsky, Jan

1994-05-01

Phase transformations and porosity of the plasma sprayed alumina deposits were examined. The dependence of the phase transformations on deposit chemistry was established. Porosity changes during heat treatment were studied and a model for the porosity is proposed. A novel technique in the field of plasma sprayed deposits--small-angle neutron scattering (SANS)--was successfully applied. Deposits were manufactured using the water-stabilized plasma spray system, PAL160, with an input of 160 kW. Phase transformations of the plasma sprayed alumina deposits were studied using XRD and DTA. The deposits were manufactured from 99.9% alumina, alumina-chromia (1.5% Cr_2O_3), gray alumina (3.7% TiO_2) and alumina -titania (17% TiO_2). The addition of chromia increases the temperature of the alpha phase formation by about 40^circ C and the addition of TiO_2 reduces this temperature by about 150^circ C for gray alumina and by about 175^ circC for alumina-titania. The amount of metastable theta phase was found to depend on the chemistry of the feedstock. Porosities of the deposits, made from alumina and gray alumina, were studied using mercury intrusion porosimetry, weighing method (Archimedean porosimetry), image analysis and SANS. Samples were studied in the as -sprayed condition and after heat treatment for 2 hours at 1300^circC and 1500 ^circC. Porosity depends on the deposit chemistry and on the heat treatment and varies from 5% to about 11%. Different porosity measurement techniques yield different results. Surface areas of 1.5 to 7.5 times 10^4 cm^2 /cm^3 (times 10^6 m^{ -1}) were measured using SANS and depend on heat treatment and on the deposit chemistry. The phase transformations can be associated with an increase in pore surface area and decrease in surface area at 1500 ^circC can be associated with sintering. The effective pore radius, R_{ rm eff}, as measured by SANS is a measure of the pore sizes in the 0.08 to 10 μm size range. The R_{rm eff} depends on deposit chemistry and is about 0.7 to 0.9 μm for all deposits, but the gray alumina deposit, heat treated at 1500^ circC for 2h, exhibits an R_ {rm eff} of 2.2 mu m. This increase can be associated with sintering.

A Novel Regulatory Mechanism of Smooth Muscle α-Actin Expression by NRG-1/circACTA2/miR-548f-5p Axis.

PubMed

Sun, Yan; Yang, Zhan; Zheng, Bin; Zhang, Xin-Hua; Zhang, Man-Li; Zhao, Xue-Shan; Zhao, Hong-Ye; Suzuki, Toru; Wen, Jin-Kun

2017-09-01

Neuregulin-1 (NRG-1) includes an extracellular epidermal growth factor-like domain and an intracellular domain (NRG-1-ICD). In response to transforming growth factor-β1, its cleavage by proteolytic enzymes releases a bioactive fragment, which suppresses the vascular smooth muscle cell (VSMC) proliferation by activating ErbB (erythroblastic leukemia viral oncogene homolog) receptor. However, NRG-1-ICD function in VSMCs remains unknown. Here, we characterize the function of NRG-1-ICD and underlying mechanisms in VSMCs. Immunofluorescence staining, Western blotting, and quantitative real-time polymerase chain reaction showed that NRG-1 was expressed in rat, mouse, and human VSMCs and was upregulated and cleaved in response to transforming growth factor-β1. In the cytoplasm of HASMCs (human aortic smooth muscle cells), the NRG-1-ICD participated in filamentous actin formation by interacting with α-SMA (smooth muscle α-actin). In the nucleus, the Nrg-1-ICD induced circular ACTA2 (alpha-actin-2; circACTA2) formation by recruitment of the zinc-finger transcription factor IKZF1 (IKAROS family zinc finger 1) to the first intron of α-SMA gene. We further confirmed that circACTA2, acting as a sponge binding microRNA (miR)-548f-5p, interacted with miR-548f-5p targeting 3' untranslated region of α-SMA mRNA, which in turn relieves miR-548f-5p repression of the α-SMA expression and thus upregulates α-SMA expression, thereby facilitating stress fiber formation and cell contraction in HASMCs. Accordingly, in vivo studies demonstrated that the localization of the interaction of circACTA2 with miR-548f-5p is significantly decreased in human intimal hyperplastic arteries compared with normal arteries, implicating that dysregulation of circACTA2 and miR-548f-5p expression is involved in intimal hyperplasia. These results suggest that circACTA2 mediates NRG-1-ICD regulation of α-SMA expression in HASMCs via the NRG-1-ICD/circACTA2/miR-548f-5p axis. Our data provide a molecular basis for fine-tuning α-SMA expression and VSMC contraction by transcription factor, circular RNA, and microRNA. © 2017 American Heart Association, Inc.

Speckle Interferometry at the US Naval Observatory. XIII

DTIC Science & Technology

2007-10-01

18443+3940 ............................. STF 2382 AB 6.394 348.9 2.35 1 0.3 0.06 Mason et al. (2004a) 0.2 0.03 Novakovic & Todorovic (2005) 18443+3940...1952, Bull. Astron. Paris, 16, 263 Novakovic , B., & Todorovic, N. 2005, Circ. d’Inf. 157 Olevic, D. 2002, Circ. d’Inf. 147 Olevic, D., & Cvetkovic, Z

Identification of aberrantly expressed circRNAs in subgroup J avian leucosis virus induced tumor livers by RNA sequencing

USDA-ARS?s Scientific Manuscript database

ALV-J (subgroup J avian leucosis virus) is a kind of oncogenic exogenous retrovirus and diseases associated with ALV-J have caused severe reproduction problems in the poultry industry worldwide. However, the pathogenesis of ALV-J-induced tumor formation is still unclear. In recent years, circRNAs ar...

Linear circuit analysis program for IBM 1620 Monitor 2, 1311/1443 data processing system /CIRCS/

NASA Technical Reports Server (NTRS)

Hatfield, J.

1967-01-01

CIRCS is modification of IBSNAP Circuit Analysis Program, for use on smaller systems. This data processing system retains the basic dc, transient analysis, and FORTRAN 2 formats. It can be used on the IBM 1620/1311 Monitor I Mod 5 system, and solves a linear network containing 15 nodes and 45 branches.

Circular RNAs: analysis, expression and potential functions

PubMed Central

Salzman, Julia

2016-01-01

Just a few years ago, it had been assumed that the dominant RNA isoforms produced from eukaryotic genes were variants of messenger RNA, functioning as intermediates in gene expression. In early 2012, however, a surprising discovery was made: circular RNA (circRNA) was shown to be a transcriptional product in thousands of human and mouse genes and in hundreds of cases constituted the dominant RNA isoform. Subsequent studies revealed that the expression of circRNAs is developmentally regulated, tissue and cell-type specific, and shared across the eukaryotic tree of life. These features suggest important functions for these molecules. Here, we describe major advances in the field of circRNA biology, focusing on the regulation of and functional roles played by these molecules. PMID:27246710

Size dependent anomalous dielectric behavior in nanoparticle Gd2 O 3 : SiO2 glass composite system

NASA Astrophysics Data System (ADS)

Mukherjee, Sudip; Lin, Yu-Hsing; Kao, Ting-Hui; Chou, C. C.; Yang, H. D.

2011-03-01

Gd 2 O3 (0.5 mol%) nanoparticles have been synthesized in a silica glass matrix by the sol-gel method at calcination temperatures of 700& circ; C and above. Compared with the parent material Si O2 , this nano-glass composite system shows enhancement of dielectric constant and diffuse phase transition along with magnetodielectric effect around room temperature. Observed conduction mechanism is found to be closely related to the thermally activated oxygen vacancies. Magnetodielectric behavior is strongly associated with magnetoresistance changes, depending on the nanoparticle size and separation. Such a material might be treated as a potential candidate for device miniaturization.

Deuterated silicon nitride photonic devices for broadband optical frequency comb generation

NASA Astrophysics Data System (ADS)

Chiles, Jeff; Nader, Nima; Hickstein, Daniel D.; Yu, Su Peng; Briles, Travis Crain; Carlson, David; Jung, Hojoong; Shainline, Jeffrey M.; Diddams, Scott; Papp, Scott B.; Nam, Sae Woo; Mirin, Richard P.

2018-04-01

We report and characterize low-temperature, plasma-deposited deuterated silicon nitride thin films for nonlinear integrated photonics. With a peak processing temperature less than 300$^\\circ$C, it is back-end compatible with pre-processed CMOS substrates. We achieve microresonators with a quality factor of up to $1.6\\times 10^6 $ at 1552 nm, and $>1.2\\times 10^6$ throughout $\\lambda$ = 1510 -- 1600 nm, without annealing or stress management. We then demonstrate the immediate utility of this platform in nonlinear photonics by generating a 1 THz free spectral range, 900-nm-bandwidth modulation-instability microresonator Kerr comb and octave-spanning, supercontinuum-broadened spectra.

Constraints on Short, Hard Gamma-Ray Burst Beaming Angles from Gravitational Wave Observations

NASA Astrophysics Data System (ADS)

Williams, D.; Clark, J. A.; Williamson, A. R.; Heng, I. S.

2018-05-01

The first detection of a binary neutron star merger, GW170817, and an associated short gamma-ray burst confirmed that neutron star mergers are responsible for at least some of these bursts. The prompt gamma-ray emission from these events is thought to be highly relativistically beamed. We present a method for inferring limits on the extent of this beaming by comparing the number of short gamma-ray bursts (SGRBs) observed electromagnetically with the number of neutron star binary mergers detected in gravitational waves. We demonstrate that an observing run comparable to the expected Advanced LIGO (aLIGO) 2016–2017 run would be capable of placing limits on the beaming angle of approximately θ \\in (2\\buildrel{\\circ}\\over{.} 88,14\\buildrel{\\circ}\\over{.} 15), given one binary neutron star detection, under the assumption that all mergers produce a gamma-ray burst, and that SGRBs occur at an illustrative rate of {{ \\mathcal R }}grb}=10 {Gpc}}-3 {yr}}-1. We anticipate that after a year of observations with aLIGO at design sensitivity in 2020, these constraints will improve to θ \\in (8\\buildrel{\\circ}\\over{.} 10,14\\buildrel{\\circ}\\over{.} 95), under the same efficiency and SGRB rate assumptions.

A Novel, Highly Stable Fold of the Immunoglobulin Binding Domain of Streptococcal Protein G

NASA Astrophysics Data System (ADS)

Gronenborn, Angela M.; Filpula, David R.; Essig, Nina Z.; Achari, Aniruddha; Whitlow, Marc; Wingfield, Paul T.; Marius Clore, G.

1991-08-01

The high-resolution three-dimensional structure of a single immunoglobulin binding domain (B1, which comprises 56 residues including the NH_2-terminal Met) of protein G from group G Streptococcus has been determined in solution by nuclear magnetic resonance spectroscopy on the basis of 1058 experimental restraints. The average atomic root-mean-square distribution about the mean coordinate positions is 0.27 angstrom (overset{circ}{mathrm A}) for the backbone atoms, 0.65 overset{circ}{mathrm A} for all atoms, and 0.39 overset{circ}{mathrm A} for atoms excluding disordered surface side chains. The structure has no disulfide bridges and is composed of a four-stranded β sheet, on top of which lies a long helix. The central two strands (β 1 and β 4), comprising the NH_2- and COOH-termini, are parallel, and the outer two strands (β 2 and β 3) are connected by the helix in a +3x crossover. This novel topology (-1, +3x, -1), coupled with an extensive hydrogen-bonding network and a tightly packed and buried hydrophobic core, is probably responsible for the extreme thermal stability of this small domain (reversible melting at 87^circC).

Simulator of human visual perception

NASA Astrophysics Data System (ADS)

Bezzubik, Vitalii V.; Belashenkov, Nickolai R.

2016-04-01

Difference of Circs (DoC) model allowing to simulate the response of neurons - ganglion cells as a reaction to stimuli is represented and studied in relation with representation of receptive fields of human retina. According to this model the response of neurons is reduced to execution of simple arithmetic operations and the results of these calculations well correlate with experimental data in wide range of stimuli parameters. The simplicity of the model and reliability of reproducing of responses allow to propose the conception of a device which can simulate the signals generated by ganglion cells as a reaction to presented stimuli. The signals produced according to DoC model are considered as a result of primary processing of information received from receptors independently of their type and may be sent to higher levels of nervous system of living creatures for subsequent processing. Such device may be used as a prosthesis for disabled organ.

circHECTD1 promotes the silica-induced pulmonary endothelial-mesenchymal transition via HECTD1.

PubMed

Fang, Shencun; Guo, Huifang; Cheng, Yusi; Zhou, Zewei; Zhang, Wei; Han, Bing; Luo, Wei; Wang, Jing; Xie, Weiping; Chao, Jie

2018-03-14

Excessive proliferation and migration of fibroblasts contribute to pulmonary fibrosis in silicosis, and both epithelial cells and endothelial cells participate in the accumulation of fibroblasts via the epithelial-mesenchymal transition (EMT) and the endothelial-mesenchymal transition (EndMT), respectively. A mouse endothelial cell line (MML1) was exposed to silicon dioxide (SiO 2 , 50 μg/cm 2 ), and immunofluorescence and western blot analyses were performed to evaluate levels of specific endothelial and mesenchymal markers and to elucidate the mechanisms by which SiO 2 induces the EndMT. Functional changes were evaluated by analyzing cell migration and proliferation. The mRNA and circular RNA (circRNA) levels were measured using qPCR and fluorescent in situ hybridization (FISH). Lung tissue samples from both Tie2-GFP mice exposed to SiO 2 and silicosis patients were applied to confirm the observations from in vitro experiments. Based on the results from the current study, SiO 2 increased the expression of mesenchymal markers (type I collagen (COL1A1), type III collagen (COL3A1) and alpha smooth muscle actin (α-SMA/Acta2)) and decreased the expression of endothelial markers (vascular endothelial cadherin (VE-Cad/Cdh 5) and platelet endothelial cell adhesion molecule-1 (PECAM1)), indicating the occurrence of the EndMT in response to SiO 2 exposure both in vivo and in vitro. SiO 2 concomitantly increased circHECTD1 expression, which, in turn, inhibited HECTD1 protein expression. SiO 2 -induced increases in cell proliferation, migration, and changes in marker levels were restored by either a small interfering RNA (siRNA) targeting circHECTD1 or overexpression of HECTD1 via the CRISPR/Cas9 system, confirming the involvement of the circHECTD1/HECTD1 pathway in the EndMT. Moreover, tissue samples from SiO 2 -exposed mice and silicosis patients confirmed the EndMT and change in HECTD1 expression. Our findings reveal a potentially new function for the circHECTD1/HECTD1 pathway and suggest a possible mechanism of fibrosis in patients with pulmonary silicosis.

A Multiwavelength Study of the Segue 3 Cluster

NASA Astrophysics Data System (ADS)

Hughes, Joanne; Lacy, Brianna; Sakari, Charli; Wallerstein, George; Davis, Christoper Evan; Schiefelbein, Spencer; Corrin, Olivia; Joudi, Hanah; Le, Donna; Haynes, Rose Marie

2017-08-01

We present new SDSS and Washington photometry of the young outer-halo stellar system Segue 3. Combined with archival VI-observations, our most consistent results yield Z=0.006+/- 0.001, {log}({Age})=9.42+/- 0.08, {(m-M)}0=17.35+/- 0.08, and E(B-V)=0.09+/- 0.01, with a high binary fraction of 0.39 ± 0.05 derived using the Padova models. We confirm that mass-segregation has occurred, supporting the hypothesis that this cluster is being tidally disrupted. A three-parameter King model yields a cluster radius of {r}{cl}=0\\mathop{.}\\limits^\\circ 017+/- 0\\mathop{.}\\limits^\\circ 007, a core radius of {r}{{c}}=0\\mathop{.}\\limits^\\circ 003+/- 0\\mathop{.}\\limits^\\circ 001, and a tidal radius of {r}{{t}}=0\\mathop{.}\\limits^\\circ 04+/- 0\\mathop{.}\\limits^\\circ 02. A comparison of Padova and Dartmouth model-grids indicates that the cluster is not significantly α-enhanced, with a mean [{Fe}/{{H}}]=-{0.55}-0.12+0.15 dex, and a population age of only 2.6 ± 0.4 Gyr. We rule out a statistically significant age spread at the main-sequence turnoff because of a narrow subgiant branch, and discuss the role of stellar rotation and cluster age, using Dartmouth and Geneva models: approximately 70% of the Seg 3 stars at or below the main-sequence turnoff have enhanced rotation. Our results for Segue 3 indicate that it is younger and more metal-rich than all previous studies have reported to date. From colors involving Washington C and SDSS-u filters, we identify several giants and a possible blue straggler for future follow-up spectroscopic studies, and we produce spectral energy distributions of previously known members and potential Segue 3 sources with Washington (CT 1), Sloan (ugri), and VI-filters. Segue 3 shares the characteristics of unusual stellar systems that have likely been stripped from external dwarf galaxies as they are being accreted by the Milky Way, or that have been formed during such an event. Its youth, metallicity, and location are all inconsistent with Segue 3 being a cluster native to the Milky Way.

Identification of Novel Long Non-coding and Circular RNAs in Human Papillomavirus-Mediated Cervical Cancer

PubMed Central

Wang, Hongbo; Zhao, Yingchao; Chen, Mingyue; Cui, Jie

2017-01-01

Cervical cancer is the third most common cancer worldwide and the fourth leading cause of cancer-associated mortality in women. Accumulating evidence indicates that long non-coding RNAs (lncRNAs) and circular RNAs (circRNAs) may play key roles in the carcinogenesis of different cancers; however, little is known about the mechanisms of lncRNAs and circRNAs in the progression and metastasis of cervical cancer. In this study, we explored the expression profiles of lncRNAs, circRNAs, miRNAs, and mRNAs in HPV16 (human papillomavirus genotype 16) mediated cervical squamous cell carcinoma and matched adjacent non-tumor (ATN) tissues from three patients with high-throughput RNA sequencing (RNA-seq). In total, we identified 19 lncRNAs, 99 circRNAs, 28 miRNAs, and 304 mRNAs that were commonly differentially expressed (DE) in different patients. Among the non-coding RNAs, 3 lncRNAs and 44 circRNAs are novel to our knowledge. Functional enrichment analysis showed that DE lncRNAs, miRNAs, and mRNAs were enriched in pathways crucial to cancer as well as other gene ontology (GO) terms. Furthermore, the co-expression network and function prediction suggested that all 19 DE lncRNAs could play different roles in the carcinogenesis and development of cervical cancer. The competing endogenous RNA (ceRNA) network based on DE coding and non-coding RNAs showed that each miRNA targeted a number of lncRNAs and circRNAs. The link between part of the miRNAs in the network and cervical cancer has been validated in previous studies, and these miRNAs targeted the majority of the novel non-coding RNAs, thus suggesting that these novel non-coding RNAs may be involved in cervical cancer. Taken together, our study shows that DE non-coding RNAs could be further developed as diagnostic and therapeutic biomarkers of cervical cancer. The complex ceRNA network also lays the foundation for future research of the roles of coding and non-coding RNAs in cervical cancer. PMID:28970820

Fabrication and Electrical Characterization of Deep-Submicron Trench-Isolated CMOS Device Structures.

NASA Astrophysics Data System (ADS)

Perera, Asanga Hiran

The magnitude of the extrinsic parasitic MOSFET series resistance was experimentally evaluated in the deep -submicron domain and its consequence on device performance was determined. The series resistance of depletion mode MOSFET test structures were measured for source-drain sizes as small as 0.2 μm by 0.3 μm at room temperature and 100^ circK. To build the test structures a multilevel -full electron beam lithography fabrication process was developed with a pattern overlay accuracy of 75 nm. A new positive tone novalac resist, SYSTEM-9, was developed for electron beam application. The resist had moderate sensitivity, 19-30 muC/cm ^2, and a contrast up to 14. Interrupted development and reduced developer temperature resulted in contrast enhancements of up to 125%. SYSTEM-9 had a two or three times better dry etch resistance than PMMA. A shallow trench isolation technology capable of defining 0.2 μm wide active areas was developed. A rapid thermal annealing based silicidation scheme using TiSi_2 was established. MOSFET sidewall spacer formation using PECVD SiO_2 was calibrated. Antimony and gallium were investigated as possible alternatives to arsenic and boron, respectively, and well behaved substrate diodes were successfully fabricated. Two new patterning techniques for the metal bi-layer metalization of TiW and Al, based on liftoff and reactive ion etching, were developed. The source drain resistance of the test structures was measured at room temperature and at 100^ circK. An LN_2 flushed cold chuck for low temperature device probing was designed and constructed. The temperature dependence of the current voltage characteristics and the extracted series resistance proved that current flow in the contacts was tunneling dominated. The extrinsic source-drain resistance increased rapidly as the contact size decreased below 0.5 mum, and showed an almost two order of magnitude change, when the source-drain area was reduced from 2 x 1.7 mum^2 to 0.2 x 0.3 mum^2 . The effect of this resistance increase on a CMOS inverter switching speed was estimated. A first order empirical model to predict the series resistance was also formulated. Good correspondence was observed between results from the device simulator PISCES-2B and measured data for larger source-drain sizes.

Circular RNA - New member of noncoding RNA with novel functions.

PubMed

Hsiao, Kuei-Yang; Sun, H Sunny; Tsai, Shaw-Jenq

2017-06-01

A growing body of evidence indicates that circular RNAs are not simply a side product of splicing but a new class of noncoding RNAs in higher eukaryotes. The progression for the studies of circular RNAs is accelerated by combination of several advanced technologies such as next generation sequencing, gene silencing (small interfering RNAs) and editing (CRISPR/Cas9). More and more studies showed that dysregulated expression of circular RNAs plays critical roles during the development of several human diseases. Herein, we review the current advance of circular RNAs for their biosynthesis, molecular functions, and implications in human diseases. Impact statement The accumulating evidence indicate that circular RNA (circRNA) is a novel class of noncoding RNA with diverse molecular functions. Our review summarizes the current hypotheses for the models of circRNA biosynthesis including the direct interaction between upstream and downstream introns and lariat-driven circularization. In addition, molecular functions such as a decoy of microRNA (miRNA) termed miRNA sponge, transcriptional regulator, and protein-like modulator are also discussed. Finally, we reviewed the potential roles of circRNAs in neural system, cardiovascular system as well as cancers. These should provide insightful information for studying the regulation and functions of circRNA in other model of human diseases.

Coupling of a 3D Finite Element Model of Cardiac Ventricular Mechanics to Lumped Systems Models of the Systemic and Pulmonic Circulation

PubMed Central

Kerckhoffs, Roy C. P.; Neal, Maxwell L.; Gu, Quan; Bassingthwaighte, James B.; Omens, Jeff H.; McCulloch, Andrew D.

2010-01-01

In this study we present a novel, robust method to couple finite element (FE) models of cardiac mechanics to systems models of the circulation (CIRC), independent of cardiac phase. For each time step through a cardiac cycle, left and right ventricular pressures were calculated using ventricular compliances from the FE and CIRC models. These pressures served as boundary conditions in the FE and CIRC models. In succeeding steps, pressures were updated to minimize cavity volume error (FE minus CIRC volume) using Newton iterations. Coupling was achieved when a predefined criterion for the volume error was satisfied. Initial conditions for the multi-scale model were obtained by replacing the FE model with a varying elastance model, which takes into account direct ventricular interactions. Applying the coupling, a novel multi-scale model of the canine cardiovascular system was developed. Global hemodynamics and regional mechanics were calculated for multiple beats in two separate simulations with a left ventricular ischemic region and pulmonary artery constriction, respectively. After the interventions, global hemodynamics changed due to direct and indirect ventricular interactions, in agreement with previously published experimental results. The coupling method allows for simulations of multiple cardiac cycles for normal and pathophysiology, encompassing levels from cell to system. PMID:17111210

β Pictoris' inner disk in polarized light and new orbital parameters for β Pictoris b

DOE PAGES

Millar-Blanchaer, Maxwell A.; Graham, James R.; Pueyo, Laurent; ...

2015-09-16

Here, we present H-band observations of β Pic with the Gemini Planet Imager's (GPI's) polarimetry mode that reveal the debris disk between ~0farcs3 (6 AU) and ~1farcs7 (33 AU), while simultaneously detecting β Pic b. The polarized disk image was fit with a dust density model combined with a Henyey–Greenstein scattering phase function. The best-fit model indicates a disk inclined to the line of sight (more » $$\\phi =85\\buildrel{\\circ}\\over{.} {27}_{-0.19}^{+0.26}$$) with a position angle (PA) $${\\theta }_{\\mathrm{PA}}=30\\buildrel{\\circ}\\over{.} {35}_{-0.28}^{+0.29}$$ (slightly offset from the main outer disk, $${\\theta }_{\\mathrm{PA}}\\approx 29^\\circ $$), that extends from an inner disk radius of $${23.6}_{-0.6}^{+0.9}\\;\\mathrm{AU}$$ to well outside GPI's field of view.« less

The Formation, Transport Properties and Microstructure of 45 Degrees (001) Tilt Grain Boundaries in Yttrium BARIUM(2) COPPER(3) OXYGEN(7-X) Thin Films

NASA Astrophysics Data System (ADS)

Vuchic, Boris Vukan

1995-01-01

Most high angle grain boundaries in high-T _{c} superconductors exhibit weak link behavior. The Josephson-like properties of these grain boundaries can be used for many device applications such as superconducting quantum interference devices (SQUIDs). The structure-property relationship of different types of 45 ^circ (001) YBa_2 Cu_3O_{7-x} thin film grain boundary junctions are examined to study their weak link nature. A technique, termed sputter-induced epitaxy, is developed to form 45^circ (001) tilt grain boundaries in YBa_2Cu _3O_{7-x} thin films on (100) MgO substrates. A low voltage ion bombardment pre-growth substrate treatment is used to modify the epitaxial orientation relationship between the thin film and the substrate in selected regions. By modifying the orientation of the thin film, grain boundary junctions can be placed in any configuration on the substrate. A variety of pre-growth sputtering conditions in conjunction with atomic force microscopy and Rutherford backscatter spectrometry are used to determine the role of the ions in modifying the substrate surface. Sputter-induced epitaxy is extended to a multilayer MgO/LaAlO_3 substrate, allowing integration of the sputter -induced epitaxy junctions into multilayer structures. The low temperature transport properties of the sputter-induced epitaxy junctions and a set of bi-epitaxial grain boundaries are studied. Individual grain boundaries are isolated and characterized for resistance vs. temperature, current vs. voltage as a function of temperature and magnetic field behavior. Resistive and superconducting grain boundaries are compared. Microstructural analysis is performed using scanning electron microscopy, transmission electron microscopy and high resolution electron microscopy (HREM). Marked differences are observed in the microstructure of resistive and superconducting grain boundaries. HREM studies suggest the importance of the local atomic scale structure of the grain boundary in transport properties. A phenomenological grain boundary model is proposed to describe the structure -property relationship of the boundaries.

Solid State Reaction of Thin Metal Films with MERCURY(1-X)CADMIUM(X)TELLURIDE.

NASA Astrophysics Data System (ADS)

Ehsani, Hassan

The solid state reactions of both e-beam evaporation and sputter deposition of thin layers of Cu, Co, and Ni onto CdTe and Hg_{0.8}Cd _{0.2}Te have been investigated using Transmission Electron Microscopy and Auger Electron Spectroscopy. For a Cu overlayer deposited by either method on CdTe(111) and Hg_{0.8}Cd _{0.2}Te substrates, we observed formation of a relatively thick region of Cu _{rm 2-x}Te (superlattice structure), even though the heat of reactions ( DeltaH_{rm R} ) are positive as calculated using bulk parameters. Deposition of Co onto Hg_{0.8 }Cd_{0.2}Te substrates reacted to form the gamma -phase (Co_3Te_4) at room temperature in the case of deposition by sputtering, and at 150^circC annealing temperature in the case of deposition by e-beam evaporation. This compound was stable at room and elevated temperatures (100 ^circC, 200^ circC, 300^circC, and 400^circC). On the other hand Co did not react with CdTe (at temperature less than 300^circC) instead, generation of Te was observed. The Te generated in the case of sputter deposition and fast deposition (8-10A) e-beam evaporation was polycrystalline whereas, in the case of slow deposition (0.3-0.5A) e-beam evaporation it was amorphous. Auger depth profile indicated that the amount of excess Te in the case of sputter deposition was larger in compared with deposition by e-beam evaporation. The excess Te was distributed throughout the Co film. The results of Ni deposited onto Hg_ {0.8}Cd_{0.2} Te or CdTe substrate were somewhat similar to the Co cases. Ni reacted with Hg_{0.8 }Cd_{0.2}Te at room temperature in either deposition system to form the delta-phase (NiTe-Ni _2Te). From the results of this work it is clear that the solid produced as a result of either e-beam or sputter deposition has a higher free energy than that of a metal layer on contact with the substrate. This result indicates importance of kinetics in the formation of the interface structure of metals deposited on Hg_{0.8 }Cd_{0.2}Te substrates. (Abstract shortened with permission of author.).

KELT-20b: A Giant Planet with a Period of P ˜ 3.5 days Transiting the V ˜ 7.6 Early A Star HD 185603

NASA Astrophysics Data System (ADS)

Lund, Michael B.; Rodriguez, Joseph E.; Zhou, George; Gaudi, B. Scott; Stassun, Keivan G.; Johnson, Marshall C.; Bieryla, Allyson; Oelkers, Ryan J.; Stevens, Daniel J.; Collins, Karen A.; Penev, Kaloyan; Quinn, Samuel N.; Latham, David W.; Villanueva, Steven, Jr.; Eastman, Jason D.; Kielkopf, John F.; Oberst, Thomas E.; Jensen, Eric L. N.; Cohen, David H.; Joner, Michael D.; Stephens, Denise C.; Relles, Howard; Corfini, Giorgio; Gregorio, Joao; Zambelli, Roberto; Esquerdo, Gilbert A.; Calkins, Michael L.; Berlind, Perry; Ciardi, David R.; Dressing, Courtney; Patel, Rahul; Gagnon, Patrick; Gonzales, Erica; Beatty, Thomas G.; Siverd, Robert J.; Labadie-Bartz, Jonathan; Kuhn, Rudolf B.; Colón, Knicole D.; James, David; Pepper, Joshua; Fulton, Benjamin J.; McLeod, Kim K.; Stockdale, Christopher; Calchi Novati, Sebastiano; DePoy, D. L.; Gould, Andrew; Marshall, Jennifer L.; Trueblood, Mark; Trueblood, Patricia; Johnson, John A.; Wright, Jason; McCrady, Nate; Wittenmyer, Robert A.; Johnson, Samson A.; Sergi, Anthony; Wilson, Maurice; Sliski, David H.

2017-11-01

We report the discovery of KELT-20b, a hot Jupiter transiting a V˜ 7.6 early A star, HD 185603, with an orbital period of P≃ 3.47 days. Archival and follow-up photometry, Gaia parallax, radial velocities, Doppler tomography, and AO imaging were used to confirm the planetary nature of KELT-20b and characterize the system. From global modeling we infer that KELT-20 is a rapidly rotating (v\\sin {I}* ≃ 120 {km} {{{s}}}-1) A2V star with an effective temperature of {T}{eff}={8730}-260+250 K, mass of {M}* ={1.76}-0.20+0.14 {M}⊙ , radius of {R}* ={1.561}-0.064+0.058 {R}⊙ , surface gravity of {log}{g}* ={4.292}-0.020+0.017, and age of ≲ 600 {Myr}. The planetary companion has a radius of {R}P={1.735}-0.075+0.070 {R}{{J}}, a semimajor axis of a={0.0542}-0.0021+0.0014 au, and a linear ephemeris of {{BJD}}{TDB}=2457503.120049+/- 0.000190 +E(3.4741070+/- 0.0000019). We place a 3σ upper limit of ˜ 3.5 {M}{{J}} on the mass of the planet. Doppler tomographic measurements indicate that the planetary orbit normal is well aligned with the projected spin axis of the star (λ =3\\buildrel{\\circ}\\over{.} 4+/- 2\\buildrel{\\circ}\\over{.} 1). The inclination of the star is constrained to 24\\buildrel{\\circ}\\over{.} 4< {I}* < 155\\buildrel{\\circ}\\over{.} 6, implying a three-dimensional spin-orbit alignment of 1\\buildrel{\\circ}\\over{.} 3< \\psi < 69\\buildrel{\\circ}\\over{.} 8. KELT-20b receives an insolation flux of ˜ 8× {10}9 {erg} {{{s}}}-1 {{cm}}-2, implying an equilibrium temperature of of ˜2250 K, assuming zero albedo and complete heat redistribution. Due to the high stellar {T}{eff}, KELT-20b also receives an ultraviolet (wavelength d≤slant 91.2 nm) insolation flux of ˜ 9.1× {10}4 {erg} {{{s}}}-1 {{cm}}-2, possibly indicating significant atmospheric ablation. Together with WASP-33, Kepler-13 A, HAT-P-57, KELT-17, and KELT-9, KELT-20 is the sixth A star host of a transiting giant planet, and the third-brightest host (in V) of a transiting planet.

Radiation-Induced Damage to Nucleic Acid Constituents

NASA Astrophysics Data System (ADS)

Kim, Heasook

The objective of this research was to identify the primary free radical species produced by ionizing radiation in DNA. The ultimate goal would be to use these data obtained from model compounds to analyze radiation-induced damage in DNA itself. The different single crystals were studied in detail. The first was the sodium salt of guanosine-3 ^':5^' -cyclic monophosphate (cyclic GMP). The results of studies on crystals irradiated at 4.2^ circK distinguished two species. One of these species exhibited a non-exchangeable proton coupling that was characterized by ENDOR spectroscopy and shown to be sigma proton. The spin density on C8 was deduced from the ENDOR hyperfine coupling tensor and found to be 0.15. The second species also exhibited a non-exchangeable sigma proton coupling and a beta proton coupling. The spin densities on C8 and N9 were deduced from ENDOR measurements to be 0.09 and 0.36. The former is attributed to the oxidation product and the latter to the primary reduction product. These products are respectively the guanine cation and anion. The second single crystal studied was a sodium salt of 2^'-deoxyguanosine -5^'-monophosphate tetrahydrate. The ESR and ENDOR spectra obtained from this crystal after x-irradiation at 4.2^circK were complex and the paramagnetic species were tentatively identified as ionic species. The third DNA model compound studied was thymidine. Single crystal of thymidine were irradiated at 1.6^ circK and at 4.2^circ K. The lower temperature preserved a more primitive stage of the radiation damage process. ENDOR measurements distinguished three paramagnetic species. The most interesting component of the paramagnetic absorption in crystals irradiated at 1.6^circK is attributed to trapped electron. These electrons are stabilized by the electrostatic fields generated by hydroxy dipoles. The hyperfine couplings between the trapped electron and the proton of these polar groups were deduced from ENDOR measurements. The ESR and ENDOR measurements described in this report were carried out DNA model compounds x-irradiated and measured at lower temperatures than reported previously. The experiments have demonstrated that an earlier stage of radiation damage can sometimes be stabilized and characterized in single crystals by maintaining the sample at 1.4 ^circK. (Abstract shortened with permission of author.).

Etude du comportement et de la modélisation viscoplastique du zircaloy 4recristallisé sous chargements monotones et cycliques uni et multiaxes

NASA Astrophysics Data System (ADS)

Delobelle, P.; Robinet, P.

1994-08-01

The results of experiment performed on a recrystallized zircaloy 4 alloy in the intermediate temperature domain 20 leqslant T leqslant 400 ^{circ}C are presented. To characterize the anisotropy, especially at 350 ^{circ}C, the tests were made under both monotonic and cyclic uni- and bidirectional loadings, i.e. tension-compression, tension-torsion and tension-internal pressure tests. The different anisotropy coefficients and especially R^p = \\varepsilon^p_{θθ} /\\varepsilon^ p _ {{^-_-}{^-_-} } seem to be temperature independent. An important feature of the behavior of this alloy in the neighbourhood of 300 ^{circ}C is attributed to the dislocations-point defects interactions (dynamic strain aging), phenomena often observed in the solid solutions. For the 2D cyclic non proportional loadings it is shown that a weak supplementary hardening appears, which is a function of the degree of the phase lag. We propose to particularize and to apply a unified viscoplastic model with internal variables to the considered alloy, as the model as already been developed and identified elsewhere for other isotropic materials. From a general point of view the introduction of the anisotropy in the model is made by four tensors of rank 4 ; [ M] is assigned to the flow directions, [ N] to the linear parts of the kinematical hardening variables and [ Q] , [ R] respectively to the dynamic and static recoveries of these tensorial variables. This phenomenological formulation leads to a correct representation of the set of the experimental results presented at 350 ^{circ}C, which provides an a posteriori confirmation of the formalism used. On étudie, entre 20 et 400 ^{circ}C, à l'aide d'essais sous chargements multiaxiaux monotones et cycliques (traction, torsion et pression interne) les propriétés viscoplastiques anisotropes de tube de zircaloy 4 recristallisé. A la température de 350 ^{circ}C, l'anisotropie a été quantifiée de façon détaillée. Les quelques résultats obtenus à la température ambiante ainsi que l'indépendance du rapport R^p = \\varepsilon^p_{θθ}/\\varepsilon^ p_{{^-_-}{^-_-} } avec la température laissent supposer que l'ensemble des coefficients d'anisotropie ne dépendent pas de la température. Par contre, la fluidité de cet alliage présente un minimum très marqué au voisinage de 300 ^{circ}C. Ce comportement est imputable au vieillissement dynamique fréquemment observé dans les solutions solides d'insertion. Lors d'un chargement cyclique hors phase (traction-torsion déphasée à 90^{circ}) ce matériau présente un léger durcissement supplémentaire. On propose l'extension au cas du zircaloy 4 de la formulation d'un modèle viscoplastique unifié développé et identifié par ailleurs sur d'autres matériaux initialement isotropes. D'une manière générale, l'introduction de l'anisotropie dans ce modèle s'effectue par l'intermédiaire de quatre tenseurs d'ordre 4 affectant les directions d'écoulement [ M] , les parties linéaires des écrouissages cinématiques [ N] , ainsi que les restaurations dynamiques [ Q] et statiques [ R] de ces mêmes variables d'écrouissage. L'identification de ce modèle est discutée et réalisée à 350 ^{circ}C. On montre l'adéquation du formalisme à appréhender l'ensemble des caractéristiques mécaniques de cet alliage.

Nearby groups of galaxies in the Hercules-Bootes constellations

NASA Astrophysics Data System (ADS)

Karachentsev, I. D.; Kashibadze, O. G.; Karachentseva, V. E.

2017-04-01

We consider a sample of 412 galaxies with radial velocities $V_{\\rm LG} < 2500$ km s$^{-1}$ situated in the sky region of ${\\rm RA}=13^h\\hspace{-0.4em}.\\,0$ ... $19^h\\hspace{-0.4em}.\\,0$, ${\\rm Dec}=+10^{\\circ}$ ... $+40^{\\circ}$ between the Local Void and the Supergalactic plane. One hundred and eighty-one of them have individual distance estimates. Peculiar velocities of the galaxies as a function of Supergalactic latitude SGB show signs of Virgocentric infall at $SGB < 10^{\\circ}$ and motion from the Local Void at $SGB > 60^{\\circ}$. A half of the Hercules-Bootes galaxies belong to 17 groups and 29 pairs, with the richest group around NGC5353. A typical group is characterized by the velocity dispersion of $67$ km s$^{-1}$, the harmonic radius of $182$ kpc, the stellar mass of $4.3 \\times10^{10} M_{\\odot}$ and the virial-to-stellar mass ratio of $32$. The binary galaxies have the mean radial velocity difference of $37$ km s$^{-1}$, the projected separation of $96$ kpc, the mean integral stellar mass of $2.6\\times 10^9 M_{\\odot}$ and the mean virial-to-stellar mass ratio of about $8$. The total dark-matter-to-stellar mass ratio in the considered sky region amounts to $37$ being almost the same as that in the Local Volume.

The Mid-plane of the Main Asteroid Belt

NASA Astrophysics Data System (ADS)

Cambioni, Saverio; Malhotra, Renu

2018-03-01

We measure the mid-plane of the main asteroid belt by using the observational data of a nearly complete and unbiased sample of asteroids and find that it has inclination \\bar{I}=0\\buildrel{\\circ}\\over{.} 93+/- 0\\buildrel{\\circ}\\over{.} 04 and longitude of ascending node \\bar{{{Ω }}}=87\\buildrel{\\circ}\\over{.} 6+/- 2\\buildrel{\\circ}\\over{.} 6 (in J2000 ecliptic-equinox coordinate system). This plane differs significantly from previously published measurements, and it is also distinctly different than the solar system’s invariable plane as well as Jupiter’s orbit plane. The mid-plane of the asteroid belt is theoretically expected to be a slightly warped sheet whose local normal is controlled by the gravity of the major planets. Specifically, its inclination and longitude of ascending node varies with semimajor axis and time (on secular timescales) and is defined by the forced solution of secular perturbation theory; the ν 16 nodal secular resonance is predicted to cause a significant warp of the mid-plane in the inner asteroid belt. We test the secular theory by measuring the current location of the asteroids’ mid-plane in finer semimajor axis bins. We find that the measured mid-plane in the middle and outer asteroid belt is consistent, within the 3σ confidence level, with the prediction of secular perturbation theory, but a notable discrepancy is present in the inner asteroid belt near ∼2 au.

Reference values for blood pressure response to cycle ergometry in the first two decades of life: comparison with patients with a repaired coarctation of the aorta.

PubMed

Kaafarani, Mirna; Schroer, Christian; Takken, Tim

2017-12-01

Hemodynamic responses to exercise are used as markers of diagnosis for cardiac diseases, systolic blood pressure (SBP) especially. However, the reference values for SBP in children at peak exertion level are outdated. This study aimed to establish current reference values for SBP, rate pressure product (RPP), and circulatory power (CircP). Data from children who previously underwent cardiopulmonary exercise testing were categorized as healthy (N = 184; age 12.6 ± 2.9 years), and CoA patients (N = 25; age 13.0 ± 3.2 years). With the Lambda-Mu-Sigma (LMS) method, percentile curves were made for SBP, CircP, and RPP in function of peak work rate (Wpeak). Data of CoA patients were used to validate the reference values. Wpeak was the best predictor of peak SBP during exercise. The prediction equations for SBP, CircP and RPP were: (0.2853 x Wpeak) + 111.46; (10.56 x Wpeak) + 2550.2 and (61.879 x Wpeak) + 19.887, respectively. CoA patients showed significantly increased values for peak SBP (Z-score 1.063 ± 1.347). This study provides reference values for SBP, RPP, and CircP at peak exercise. These values can be used for objective evaluation of participants 6-18 years of age in a Dutch population.

Synthesis, Characterization, and Crystallization of Syndiotactic Alternating Ethylene-Propylene Crystalline Copolymer and its Blends.

NASA Astrophysics Data System (ADS)

Chien, Haoyang

A syndiotactic alternating ethylene-propylene (SYN-ALT-EP) crystalline copolymer was synthesized by complete hydrogenation, using a diimide reduction, of syndiotactic cis-1,4-poly(pentadiene-1,3) (CIS-PPD). The microstructure was studied by both high resolution nuclear magnetic resonance (NMR) spectroscopy and also fourier transform infra-red (FTIR) spectroscopy. The number average length of syndiotactic sequences is about 69 which indicates a high degree of syndiotacticity (97%) in the microstructure of this copolymer. The single FTIR absorbance at 733 cm^{ -1} without any splitting suggests an alternating arrangement of ethylene and propylene units. The solution state characterization of SYN-ALT -EP was studied by gel permeation chromatography using on -line measurements of multi-angle laser light scattering (MALLS), single capillary viscosities (VISC), and concentrations by differential refractive index (DRI) detectors. The Mark-Houwink-Sakurada parameters of "K" and "a" in THF at 30^circC are determined to be 8.99 times 10^ {-5} and 0.8, respectively. The universal GPC calibration curve can be applied to this copolymer in THF at 30^circC. Two different molecular relaxation processes ( alpha and beta relaxations) were found via dynamic mechanical (DM) analysis below room temperature: an alpha relaxation (around -60^ circC) and a beta relaxation (around -125^circ C). The apparent activation energy of the alpha relaxation is 285 kJ/mol, and the activation energy of the beta relaxation is 43 kJ/mol based on the Arrhenius equation. Molecular motion in SYN-ALT-EP copolymer was probed by solid state ^{13}C NMR experiments. At temperatures above T_{rm g} there are two major molecular motions in this copolymer: a backbone motion (the rotational motion about single bonds) and a methyl side group rotation. The backbone motion is frozen below T_{rm g}, but the methyl rotation still occurs. As the temperature is further decreased to about -175 ^circC, well below the beta -transition observed in DM analysis, the methyl side group rotation slows down, suggesting that the methyl rotation may be associated with the observed beta relaxation process. The equilibrium melting temperature is 55 +/- 1^circC; the equilibrium heat of fusion is 8.8 +/- 0.3 kJ/mol. The overall crystallization kinetics show an Avrami exponent (n) that qualitatively increases with crystallization temperature during primary crystallization. The transition from Regime II to Regime III is observed near T_{rm c} = 26 ^circC based on linear crystal growth rate experiments. The fold surface free energy ( sigma_{rm e}) is determined to be 33 erg/cm^2. A monoclinic crystal unit cell was determined (a = 11.19A b = 11.82A c = 9.00A gamma = 67.03^circ) from the fiber pattern via wide angle x-ray diffraction experiments (WAXD). A banded spherulitic morphology was observed by polarized light microscopy (PLM) and transmission electron microscopy (TEM). Such texture is characteristic of the co-twisting of growing lamellae. The morphology changes from regularly banded spherulites to non-regularly banded spherulites and may be correlated with the Regime III to Regime II transition. A plate-like single crystal morphology was also observed by polarized light microscopy after a melt crystallization at small supercooling conditions. Blends of SYN-ALT-EP/IPP, SYN-ALT-EP/HDPE, and SYN-ALT-EP/LDPE were made and examined. Neither T _{rm g} shifting nor co-crystallization using different blending compositions were observed. Therefore, only limited, if any, miscibility exists in these blends.

UHE Cosmic Ray Observations Using the Cygnus Water - Array

NASA Astrophysics Data System (ADS)

Dion, Cynthia L.

1995-01-01

The CYGNUS water-Cerenkov array, consisting of five surface water-Cerenkov detectors, was built in the CYGNUS extensive air shower array at Los Alamos, New Mexico (latitude 36^circ N, longitude 107^circ W, altitude 2310 meters) to search for point sources of ultra-high energy particles (>1014 eV per particle) with the CYGNUS extensive air shower array. The water-Cerenkov detectors are used to improve the angular resolution of the extensive air shower array. This experiment searches for point sources of UHE gamma-radiation that may be of galactic or extra-galactic origin. The data set from December 1991 to January 1994 consists of data from both the water-Cerenkov array and the CYGNUS extensive air shower array. These data are combined, and the angular resolution of this combined data set is measured to be 0.34^circ+0.03 ^circ-0.04^circ. The measurement is made by observing the cosmic-ray shadowing of the Sun and the Moon. Using a subset of these data, three potential sources of UHE emission are studied: the Crab Pulsar, and the active galactic nuclei Markarian 421 and Markarian 501. A search is conducted for continuous emission from these three sources, and emission over shorter time scales. This experiment is particularly sensitive to emission over these shorter time scales. There is no evidence of UHE emission from these three sources over any time scales studied, and upper bounds to the flux of gamma radiation are determined. The flux upper limit for continuous emission from the Crab Pulsar is found to be 1.2times10^ {-13}/rm cm^2/s above 70 TeV. The flux upper limit for continuous emission from Markarian 421 is found to be 1.3times10^ {-13}/rm cm^2/s above 50 TeV. The flux upper limit for continuous emission from Markarian 501 is found to be 3.8times10^ {-13}/rm cm^2/s above 50 TeV.

Characterization and Analysis of Whole Transcriptome of Giant Panda Spleens: Implying Critical Roles of Long Non-Coding RNAs in Immunity.

PubMed

Peng, Rui; Liu, Yuliang; Cai, Zhigang; Shen, Fujun; Chen, Jiasong; Hou, Rong; Zou, Fangdong

2018-01-01

Giant pandas, an endangered species, are a powerful symbol of species conservation. Giant pandas may suffer from a variety of diseases. Owing to their highly specialized diet of bamboo, giant pandas are thought to have a relatively weak ability to resist diseases. The spleen is the largest organ in the lymphatic system. However, there is little known about giant panda spleen at a molecular level. Thus, clarifying the regulatory mechanisms of spleen could help us further understand the immune system of the giant panda as well as its conservation. The two giant panda spleens were from two male individuals, one newborn and one an adult, in a non-pathological condition. The whole transcriptomes of mRNA, lncRNA, miRNA, and circRNA in the two spleens were sequenced using the Illumina HiSeq platform. EBseq and IDEG6 were used to observe the differentially expressed genes (DEGs) between these two spleens. Gene Ontology and KEGG analyses were used to annotate the function of DEGs. Furthermore, networks between non-coding RNAs and protein-coding genes were constructed to investigate the relationship between non-coding RNAs and immune-associated genes. By comparative analysis of the whole transcriptomes of these two spleens, we found that one of the major roles of lncRNAs could be involved in the regulation of immune responses of giant panda spleens. In addition, our results also revealed that microRNAs and circRNAs may have evolved to regulate a large set of biological processes of giant panda spleens, and circRNAs may function as miRNA sponges. To our knowledge, this is the first report of lncRNAs and circRNAs in giant panda, which could be a useful resource for further giant panda research. Our study reveals the potential functional roles of miRNAs, lncRNAs, and circRNAs in giant panda spleen. © 2018 The Author(s). Published by S. Karger AG, Basel.

Hydrodésazotation de la pyridine sous pression atmosphérique catalysée par des oxynitrures de Ni, Mo, et des oxynitrures mixtes MoNi, MoPNi, AlNi et AlPNi

NASA Astrophysics Data System (ADS)

Elkamel, K.; Elidrissi, M.; Yacoubi, A.; Nadiri, A.; Abouarnadasse, S.

1998-11-01

Hydrodenitrogenation of pyridine has been realised, under atmospheric pressure, in the presence of oxynitride catalysts of molybdenum, nickel and their solid solutions as well as on mixed catalysts MoNi, MoPNi, AlNi and AlPNi. In all cases, the main reaction products are n-pentane and N-pentylpiperidine, at any conversion. Kinetic results suggest that the conversion of pyridine, on nickel oxynitride, proceeds through successive steps with hydrogenation as rate-limiting. Molybdenum oxynitride and Mo-Ni-N solid solutions tested in the temperature range 500 circC-450 circC, showed a good structural and catalytic stability, but a low catalytic activity. On the other hand, nickel oxynitride catalyst yielded higher activity at much lower temperatures (190 circC-250 circC). X-rays analysis indicates that the used catalyst was entirely reduced to metallic nickel, which is the active phase. Under the same experimental conditions, mixed catalysts are relatively less active but more selective than nickel oxynitride into n-pentane formation. La réaction d'hydrodésazotation de la pyridine a été réalisée, sous pression atmosphérique, en présence de catalyseurs oxynitrures de molybdène, de nickel et leurs solutions solides ainsi que sur les catalyseurs mixtes MoNi, MoPNi, AlNi et AlPNi. Dans tous les cas, les principaux produits de réaction observés sont le n-pentane et la N- pentylpipéridine, quel que soit le taux de conversion. Les résultats cinétiques obtenus en régime intégral, en présence de l'oxynitrure de nickel, suggèrent un schéma réactionnel successif où l'hydrogénation de la pyridine serait l'étape limitante. L'oxynitrure de molybdène et les solutions solides Mo-Ni-N, testés à des températures supérieures ou égales à 500 circC, ont montré une bonne stabilité catalytique et structurale mais une faible activité catalytique. En revanche, l'oxynitrure de nickel présente une activité catalytique plus importante à des températures de réaction beaucoup plus basses (190 circC 250 circC). Cependant, l'analyse aux rayons X du catalyseur usagé, indique qu'il est entièrement réduit à l'état métallique; ceci laisse supposer que le nickel métallique est la phase active. Dans les mêmes conditions expérimentales, les catalyseurs mixtes sont relativement moins actifs que l'oxynitrure de nickel, mais plus sélectifs vis-à-vis de la formation du n-pentane.

Evidence for a Neutral Iron Line Generated by MeV Protons from Supernova Remnants Interacting with Molecular Clouds

NASA Astrophysics Data System (ADS)

Nobukawa, Kumiko K.; Nobukawa, Masayoshi; Koyama, Katsuji; Yamauchi, Shigeo; Uchiyama, Hideki; Okon, Hiromichi; Tanaka, Takaaki; Uchida, Hiroyuki; Tsuru, Takeshi G.

2018-02-01

Supernova remnants (SNRs) have been prime candidates for Galactic cosmic-ray accelerators. When low-energy cosmic-ray protons (LECRp) collide with interstellar gas, they ionize neutral iron atoms and emit the neutral iron line (Fe I Kα) at 6.40 keV. We search for the iron K-shell line in seven SNRs from the Suzaku archive data of the Galactic plane in the 6^\\circ ≲ l≲ 40^\\circ ,| b| < 1^\\circ region. All of these SNRs interact with molecular clouds. We discover Fe I Kα line emissions from five SNRs (W28, Kes 67, Kes 69, Kes 78, and W44). The spectra and morphologies suggest that the Fe I Kα line is produced by interactions between LECRp and the adjacent cold gas. The proton energy density is estimated to be ≳10–100 eV cm‑3, which is more than 10 times higher than that in the ambient interstellar medium.

Quasars in the Galactic Anti-Center Area from LAMOST DR3

NASA Astrophysics Data System (ADS)

Huo, Zhi-Ying; Liu, Xiao-Wei; Shi, Jian-Rong; Xiang, Mao-Sheng; Huang, Yang; Yuan, Hai-Bo; Zhang, Jian-Nan; Zhang, Wei; Wang, Jian-Ling; Wu, Yu-Zhong; Cao, Zi-Huang; Zhang, Yong; Hou, Yong-Hui; Wang, Yue-Fei

2017-03-01

We present a sample of quasars discovered in an area near the Galactic Anti-Center covering 150^\\circ ≤ l≤ 210^\\circ and | b| ≤ 30^\\circ , based on LAMOST Data Release 3 (DR3). This sample contains 151 spectroscopically confirmed quasars. Among them 80 are newly discovered with LAMOST. All these quasars are very bright, with i magnitudes peaking around 17.5 mag. All the new quasars were discovered serendipitously from objects that were originally targeted with LAMOST as stars having bluer colors, except for a few candidates targeted as variable, young stellar objects. This bright quasar sample at low Galactic latitudes will help fill the gap in the spatial distribution of known quasars near the Galactic disk that are used to construct an astrometric reference frame for the purpose of accurate proper motion measurements that can be applied to, for example, Gaia. They are also excellent tracers to probe the kinematics and chemistry of the interstellar medium in the Milky Way disk and halo via absorption line spectroscopy.

Bioartificial liver assist devices in support of patients with liver failure.

PubMed

Patzer II, John F; Lopez, Roberto C; Zhu, Yue; Wang, Zi-Fa; Mazariegos, George V; Fung, John J

2002-02-01

Bioartificial liver assist devices (BALs) offer an opportunity for critical care physicians and transplant surgeons to stabilize patients prior to orthotopic liver transplantation. Such devices may also act as a bridge to transplant, providing liver support to patients awaiting transplant, or as support for patients post living-related donor transplant. Four BAL devices that rely on hepatocytes cultured in hollow fiber membrane cartridges (Circe Biomedical HepatAssist(r), Vitagen ELADTM, Gerlach BELS, and Excorp Medical BLSS) are currently in various stages of clinical evaluation. Comparison of the four devices shows that several unique approaches based upon the same overall system architecture are possible. Preliminary results of the Excorp Medical BLSS Phase I safety evaluation at the University of Pittsburgh, after treating four patients (F, 41, acetominophen-induced, two support periods; M, 50, Wilson's disease, one support period; F, 53, acute alcoholic hepatitis, two support periods; F, 24, chemotherapy-induced, one support period, are presented. All patients presented with hypoglycemia and transient hypotension at the start of extracorporeal perfusion. Hypoglycemia was treated by IV dextrose and the transient hypotension responded positively to IV fluid bolus. Heparin anticoagulation was used only in the second patient. No serious or adverse events were noted in the four patients. Moderate Biochemical response to support was noted in all patients. More complete characterization of the safety of the BLSS requires completion of the Phase I safety evaluation.

Hsa-circRNA11783-2 in peripheral blood is correlated with coronary artery disease and type 2 diabetes mellitus.

PubMed

Li, Xuejie; Zhao, Zhenzhou; Jian, Dongdong; Li, Wentao; Tang, Haiyu; Li, Muwei

2017-11-01

The purpose of this study was to identify the expression characteristics of circular RNAs in the peripheral blood of coronary artery disease patients and type 2 diabetes mellitus patients. Circular RNA in the peripheral blood from 6 control individuals, 6 coronary artery disease patients, 6 type 2 diabetes mellitus patients and 6 coronary artery disease combined with type 2 diabetes mellitus patients was collected for microarray analysis, and a further independent cohort consisting of 20 normal individuals, 20 type 2 diabetes mellitus subjects and 20 coronary artery disease subjects was used to verify the expression of five circular RNAs chosen for further analysis. The findings were then tested in a third cohort using quantitative real-time polymerase chain reaction. In total, 40 circular RNAs differentially expressed between the three experimental groups and the control group were identified by microarray analysis: 13 were upregulated in the experimental groups, while 27 were downregulated. Of the five circular RNAs chosen for further analysis, three were significantly downregulated in the experimental groups. The crude odds ratios and adjusted odds ratios of hsa-circRNA11783-2 showed significant differences in both the coronary artery disease group and type 2 diabetes mellitus group. We then verified hsa-circRNA11783-2 in the third cohort, and it remained closely related to both coronary artery disease and type 2 diabetes mellitus. Hsa-circRNA11783-2 is closely related to both coronary artery disease and type 2 diabetes mellitus.

Quality factor and dose equivalent investigations aboard the Soviet Space Station Mir

NASA Astrophysics Data System (ADS)

Bouisset, P.; Nguyen, V. D.; Parmentier, N.; Akatov, Ia. A.; Arkhangel'Skii, V. V.; Vorozhtsov, A. S.; Petrov, V. M.; Kovalev, E. E.; Siegrist, M.

1992-07-01

Since Dec 1988, date of the French-Soviet joint space mission 'ARAGATZ', the CIRCE device, had recorded dose equivalent and quality factor values inside the Mir station (380-410 km, 51.5 deg). After the initial gas filling two years ago, the low pressure tissue equivalent proportional counter is still in good working conditions. Some results of three periods are presented. The average dose equivalent rates measured are respectively 0.6, 0.8 and 0.6 mSv/day with a quality factor equal to 1.9. Some detailed measurements show the increasing of the dose equivalent rates through the SAA and near polar horns. The real time determination of the quality factors allows to point out high linear energy transfer events with quality factors in the range 10-20.

Vieillissement comparé de trois polymères conducteurs

NASA Astrophysics Data System (ADS)

Jolly, R.; Pairis, S.; Pétrescu, C.

1998-06-01

We compared ageing resistance of polypyrrole (PPY), polyaniline (PANI) and polyethylene dioxithiophene (PEDT) samples, protected or not by an oxygene barrier vinylydene polychloride layer (PVDC), by recording the variations of their respective electrical conductivity. A first 550 hours at 100 circCC ageing test allows us to choose the most efficient formulation of PVDC. Selected samples have been aged at 70 circC. After 1300 hours of ageing, protected PEDT's sample electrical conductivity was 98% of its initial value, whereas PPY's was 75% and PANI's 50%. The same differences have been found for the non protected materials. Nous avons comparé la tenue au vieillissement d'échantillons de polypyrrole (PPY), polyaniline (PANI), et polyéthylène dioxythiophène (PEDT), protégés ou non par une couche de polychlorure de vinylydène (PVDC) barrière à l'oxygène, en suivant l'évolution dans le temps de leur conductivité électrique par l'intermédiaire de leur résistance. Un premier test de vieillissement de 550 heures à 100 circC a permis de sélectionner les formulations de PVDC les plus efficaces. Les échantillons sélectionnés ont été mis à vieillir à 70 circC. Après 1300 heures, le PEDT protégé conserve 98 % de sa conductivité initiale, le PPY 75 %, et la PANI 50 %. On retrouve les mêmes différences pour les matériaux non protégés.

Wide-field 12CO (J=2-1) and 13CO (J=2-1) Observations toward the Aquila Rift and Serpens Molecular Cloud Complexes. I. Molecular Clouds and Their Physical Properties

NASA Astrophysics Data System (ADS)

Nakamura, Fumitaka; Dobashi, Kazuhito; Shimoikura, Tomomi; Tanaka, Tomohiro; Onishi, Toshikazu

2017-03-01

We present the results of wide-field 12CO (J=2{--}1) and 13CO (J=2{--}1) observations toward the Aquila Rift and Serpens molecular cloud complexes (25^\\circ < l< 33^\\circ and 1^\\circ < b< 6^\\circ ) at an angular resolution of 3.‧4 (≈ 0.25 pc) and at a velocity resolution of 0.079 km s-1 with velocity coverage of -5 {km} {{{s}}}-1< {V}{LSR}< 35 {km} {{{s}}}-1. We found that the 13CO emission better traces the structures seen in the extinction map, and derived the {X}{13{CO}}-factor of this region. Applying SCIMES to the 13CO data cube, we identified 61 clouds and derived their mass, radii, and line widths. The line width-radius relation of the identified clouds basically follows those of nearby molecular clouds. The majority of the identified clouds are close to virial equilibrium, although the dispersion is large. By inspecting the 12CO channel maps by eye, we found several arcs that are spatially extended to 0.°2-3° in length. In the longitude-velocity diagrams of 12CO, we also found two spatially extended components that appear to converge toward Serpens South and the W40 region. The existence of two components with different velocities and arcs suggests that large-scale expanding bubbles and/or flows play a role in the formation and evolution of the Serpens South and W40 cloud.

Spin-Orbit Misalignments of Three Jovian Planets via Doppler Tomography

NASA Astrophysics Data System (ADS)

Johnson, Marshall C.; Cochran, William D.; Addison, Brett C.; Tinney, Chris G.; Wright, Duncan J.

2017-10-01

We present measurements of the spin-orbit misalignments of the hot Jupiters HAT-P-41 b and WASP-79 b, and the aligned warm Jupiter Kepler-448 b. We obtain these measurements with Doppler tomography, where we spectroscopically resolve the line profile perturbation during the transit due to the Rossiter-McLaughlin effect. We analyze time series spectra obtained during portions of five transits of HAT-P-41 b, and find a value of the spin-orbit misalignment of λ =-{22.1}-6.0{+0.8^\\circ }. We reanalyze the radial velocity Rossiter-McLaughlin data on WASP-79 b obtained by Addison et al. using Doppler tomographic methodology. We measure λ =-{99.1}-3.9{+4.1^\\circ }, consistent with but more precise than the value found by Addison et al. For Kepler-448 b we perform a joint fit to the Kepler light curve, Doppler tomographic data, and a radial velocity data set from Lillo-Box et al. We find an approximately aligned orbit (λ =-{7.1}-2.8{+4.2^\\circ }), in agreement with the value found by Bourrier et al. Through analysis of the Kepler light curve we measure a stellar rotation period of {P}{rot}=1.27+/- 0.11 days, and use this to argue that the full three-dimensional spin-orbit misalignment is small, \\psi ˜ 0^\\circ . Based in part on observations obtained with the Hobby-Eberly Telescope, which is a joint project of the University of Texas at Austin, the Pennsylvania State University, Stanford University, Ludwig-Maximilians-Universität München, and Georg-August-Universität Göttingen.

Multiple Isoforms of ANRIL in Melanoma Cells: Structural Complexity Suggests Variations in Processing.

PubMed

Sarkar, Debina; Oghabian, Ali; Bodiyabadu, Pasani K; Joseph, Wayne R; Leung, Euphemia Y; Finlay, Graeme J; Baguley, Bruce C; Askarian-Amiri, Marjan E

2017-06-27

The long non-coding RNA ANRIL , antisense to the CDKN2B locus, is transcribed from a gene that encompasses multiple disease-associated polymorphisms. Despite the identification of multiple isoforms of ANRIL , expression of certain transcripts has been found to be tissue-specific and the characterisation of ANRIL transcripts remains incomplete. Several functions have been associated with ANRIL . In our judgement, studies on ANRIL functionality are premature pending a more complete appreciation of the profusion of isoforms. We found differential expression of ANRIL exons, which indicates that multiple isoforms exist in melanoma cells. In addition to linear isoforms, we identified circular forms of ANRIL ( circANRIL ). Further characterisation of circANR IL in two patient-derived metastatic melanoma cell lines (NZM7 and NZM37) revealed the existence of a rich assortment of circular isoforms. Moreover, in the two melanoma cell lines investigated, the complements of circANRIL isoforms were almost completely different. Novel exons were also discovered. We also found the family of linear ANRIL was enriched in the nucleus, whilst the circular isoforms were enriched in the cytoplasm and they differed markedly in stability. With respect to the variable processing of circANRIL species, bioinformatic analysis indicated that intronic Arthrobacter luteus (Alu) restriction endonuclease inverted repeats and exon skipping were not involved in selection of back-spliced exon junctions. Based on our findings, we hypothesise that " ANRIL " has wholly distinct dual sets of functions in melanoma. This reveals the dynamic nature of the locus and constitutes a basis for investigating the functions of ANRIL in melanoma.

The IceCube Neutrino Observatory, the Pierre Auger Observatory and the Telescope Array: Joint Contribution to the 34th International Cosmic Ray Conference (ICRC 2015)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Aartsen, M.G.; et al.

2015-11-06

We have conducted three searches for correlations between ultra-high energy cosmic rays detected by the Telescope Array and the Pierre Auger Observatory, and high-energy neutrino candidate events from IceCube. Two cross-correlation analyses with UHECRs are done: one with 39 cascades from the IceCube `high-energy starting events' sample and the other with 16 high-energy `track events'. The angular separation between the arrival directions of neutrinos and UHECRs is scanned over. The same events are also used in a separate search using a maximum likelihood approach, after the neutrino arrival directions are stacked. To estimate the significance we assume UHECR magnetic deflections to be inversely proportional to their energy, with valuesmore » $$3^\\circ$$, $$6^\\circ$$ and $$9^\\circ$$ at 100 EeV to allow for the uncertainties on the magnetic field strength and UHECR charge. A similar analysis is performed on stacked UHECR arrival directions and the IceCube sample of through-going muon track events which were optimized for neutrino point-source searches.« less

Compact disk error measurements

NASA Technical Reports Server (NTRS)

Howe, D.; Harriman, K.; Tehranchi, B.

1993-01-01

The objectives of this project are as follows: provide hardware and software that will perform simple, real-time, high resolution (single-byte) measurement of the error burst and good data gap statistics seen by a photoCD player read channel when recorded CD write-once discs of variable quality (i.e., condition) are being read; extend the above system to enable measurement of the hard decision (i.e., 1-bit error flags) and soft decision (i.e., 2-bit error flags) decoding information that is produced/used by the Cross Interleaved - Reed - Solomon - Code (CIRC) block decoder employed in the photoCD player read channel; construct a model that uses data obtained via the systems described above to produce meaningful estimates of output error rates (due to both uncorrected ECC words and misdecoded ECC words) when a CD disc having specific (measured) error statistics is read (completion date to be determined); and check the hypothesis that current adaptive CIRC block decoders are optimized for pressed (DAD/ROM) CD discs. If warranted, do a conceptual design of an adaptive CIRC decoder that is optimized for write-once CD discs.

Leptonic CP phase determined by an equation involving PMNS matrix elements

NASA Astrophysics Data System (ADS)

Ke, Hong-Wei; Zhou, Jia-Hui; Li, Xue-Qian

2017-04-01

Several approximate equalities among the matrix elements of the Cabibbo-Kobayashi-Maskawa (CKM) and Pontecorvo-Maki-Nakagawa-Sakata (PMNS) matrices imply that hidden symmetries may exist and be common for both quark and neutrino sectors. The charge parity (CP) phase of the CKM matrix ({δ }{CKM}) is involved in these equalities and can be investigated when these equalities turn into several equations. As we substitute those experimentally measured values of the three mixing angles into the equations for quarks, it is noted that one of the equations which holds exactly has a solution {δ }{CKM}=({68.95}-1.15+1.15)^\\circ . That value accords with ({69.1}-3.85+2.02)^\\circ determined from available data. Generalizing the scenario to the lepton sector, the same equality determines the leptonic CP phase {δ }{PMNS} to be ({275.20}-1.15+1.15)^\\circ . Thus we predict the value of {δ }{PMNS} from the equation. So far there is no direct measurement on {δ }{PMNS}, but a recent analysis based on the neutrino oscillation data prefers a phase close to 270°.

The DECam Plane Survey: Optical Photometry of Two Billion Objects in the Southern Galactic Plane

NASA Astrophysics Data System (ADS)

Schlafly, E. F.; Green, G. M.; Lang, D.; Daylan, T.; Finkbeiner, D. P.; Lee, A.; Meisner, A. M.; Schlegel, D.; Valdes, F.

2018-02-01

The DECam Plane Survey is a five-band optical and near-infrared survey of the southern Galactic plane with the Dark Energy Camera at Cerro Tololo. The survey is designed to reach past the main-sequence turn-off of old populations at the distance of the Galactic center through a reddening E(B-V) of 1.5 mag. Typical single-exposure depths are 23.7, 22.8, 22.3, 21.9, and 21.0 mag (AB) in the grizY bands, with seeing around 1\\prime\\prime . The footprint covers the Galactic plane with | b| ≲ 4^\\circ , 5^\\circ > l> -120^\\circ . The survey pipeline simultaneously solves for the positions and fluxes of tens of thousands of sources in each image, delivering positions and fluxes of roughly two billion stars with better than 10 mmag precision. Most of these objects are highly reddened and deep in the Galactic disk, probing the structure and properties of the Milky Way and its interstellar medium. The fully-processed images and derived catalogs are publicly available.

Effect of Aerogel Anisotropy in Superfluid 3He-A

NASA Astrophysics Data System (ADS)

Zimmerman, A. M.; Li, J. I. A.; Pollanen, J.; Collett, C. A.; Gannon, W. J.; Halperin, W. P.

2014-03-01

Two theories have been advanced to describe the effects of anisotropic impurity introduced by stretched silica aerogel on the orientation of the orbital angular momentum l& circ; in superfluid 3He-A. These theories disagree on whether the anisotropy will orient l& circ; perpendicular[2] or parallel[3] to the strain axis. In order to examine this question we have produced and characterized a homogeneous aerogel sample with uniaxial anisotropy introduced during growth, corresponding to stretching of the aerogel. These samples have been shown to stabilize two new chiral states;[4] the higher temperature state being the subject of the present study. Using pulsed NMR we have performed experiments on 3He-A imbibed in this sample in two orientations: strain parallel and perpendicular to the applied magnetic field. From the NMR frequency shifts as a function of tip angle and temperature, we find that the angular momentum l& circ; is oriented along the strain axis, providing evidence for the theory advanced by Sauls. This work was supported by the National Science Foundation, DMR-1103625.

Propriétés électrostrictives de céramiques massives du type PbMg{1/3}Nb{2/3}O3 (PMN)

NASA Astrophysics Data System (ADS)

Lattard, E.; Lejeune, M.; Abelard, P.

1994-07-01

Loop hysteresis, dielectric and electrostrictive properties of bulk ceramics (1 - x) PbMg{1/3}Nb{2/3}O3 - xPbTiO3 - yMgO for x = 0, 5, 10 % and y = 0, 6, 12 % have been investigated. An initial lead oxide magnesium excess stabilises the perovskite structure during its formation and leads to an improvement of the electrical properties. These materials are relaxor type ferroelectrics with high permittivities in a large space of temperature around - 12 ^circC for x = 0 % to + 45 ^circC for x = 10 %. They exhibit, at 25 ^circC, large electrostrictive longitudinal (x_3 = Δ e/e) and transversal (x_1 = Δ d/d) strains without hysteresis, under an electric field of ± 2 kV/mm and at low frequency (F = 20 mHz) : x_3 = 3.5 × 10^{-4} and x_1 =10^{-4} for PMN 0.12-MgO and x_3 = 10^{-3} and x_1 = 2 × 10^{-4} for 0.9 PMN-0.1 PT-0.12 MgO. Additions of titanium improve the polarization of material which largely contribute to large strains whereas electrostrictive coefficients Q_{ij} (x_i = Q_{ij} \\cdot P_j^2), determined at 25 ^circC, slightly increase with PbTiO3 percent (for a constant magnesium excess). Les propriétés diélectriques, d'hystérésis de polarisation et électrostrictives (déformation sous champ électrique) ont été étudiées sur des composés massifs du type (1 - x) PbMg{1/3}Nb{2/3}O3 - xPbTiO3 - y Mgo pour x = 0, 5, 10 % et y = 0, 6, 12 %. L'excès initial d'oxyde de magnésium stabilise la phase pérovskite lors de sa formation et permet d'éviter la dégradation des propriétés électriques observée sur un composé de type PMN stœchiométrique. Ces matériaux sont des relaxeurs ferroélectriques caractérisés par une transition ferroélectrique diffuse. Les permittivités sont élevées dans un domaine de température centré autour de - 12 ^circC pour x = 0 % à + 45 ^circC pour x = 10 %. Ils présentent, à 25 ^circC, des déformations notables en mode longitudinal (x_3 = Δ e/e) et transversal (x_1 = Δ d/d), dépourvues d'hystérèse, d'origine électrostrictive (pour des champs électriques de l'ordre du kV/mm, à très basse fréquence, F = 20 mHz), soit quand E = ± 2 kV/mm, x_3 = 3,5 × 10^{-4} et x_1 = 10^{-4} pour PMN-0,12 MgO, et x_3 = 10^{-3} et x_1 = 2 × 10^{-4} pour 0,9 PMN-0,01 PT-0, 12 MgO. L'apport de titane permet d'augmenter la polarisabilité, facteur prépondérant à de grandes déformations. Parallèlement, les coefficients électrostrictifs Q_{ij} (x_i = Q_{ij} \\cdot p^2_j), calculés à 25 ^circC, croissent faiblement lorsque le pourcentage de PbTiO3 augmente, à taux de magnésium constant.

A Review of Anthropometric Data of German Air Force and United States Air Force Flying Personnel 1967-1968

DTIC Science & Technology

1975-04-01

Circ. Level (r.) 9. Radialn (r.) 10. Lower Arm Circ. Level (r.) 11. Stylion (r.) 12. Base of Hand (r.) 13. -ase of Thumb (r.) 14. Glabella 15. Min...the skin ,rease at the proximal edge of the palm. BASE OF THUMB - the point at which the extended base of the hand line intersects the radial borter...BONE the small bone of the hand just distal to the bend of the wrist or the base of the thumb . NECK POINT the point marking the intersection of the

Quantitative Proteomics Reveals the Regulatory Networks of Circular RNA CDR1as in Hepatocellular Carcinoma Cells.

PubMed

Yang, Xue; Xiong, Qian; Wu, Ying; Li, Siting; Ge, Feng

2017-10-06

Circular RNAs (circRNAs), a class of widespread endogenous RNAs, play crucial roles in diverse biological processes and are potential biomarkers in diverse human diseases and cancers. Cerebellar-degeneration-related protein 1 antisense RNA (CDR1as), an oncogenic circRNA, is involved in human tumorigenesis and is dysregulated in hepatocellular carcinoma (HCC). However, the molecular mechanisms underlying CDR1as functions in HCC remain unclear. Here we explored the functions of CDR1as and searched for CDR1as-regulated proteins in HCC cells. A quantitative proteomics strategy was employed to globally identify CDR1as-regulated proteins in HCC cells. In total, we identified 330 differentially expressed proteins (DEPs) upon enhanced CDR1as expression in HepG2 cells, indicating that they could be proteins regulated by CDR1as. Bioinformatic analysis revealed that many DEPs were involved in cell proliferation and the cell cycle. Further functional studies of epidermal growth factor receptor (EGFR) found that CDR1as exerts its effects on cell proliferation at least in part through the regulation of EGFR expression. We further confirmed that CDR1as could inhibit the expression of microRNA-7 (miR-7). EGFR is a validated target of miR-7; therefore, CDR1as may exert its function by regulating EGFR expression via targeting miR-7 in HCC cells. Taken together, we revealed novel functions and underlying mechanisms of CDR1as in HCC cells. This study serves as the first proteome-wide analysis of a circRNA-regulated protein in cells and provides a reliable and highly efficient method for globally identifying circRNA-regulated proteins.

Electron Emission in Highly Charged Ion-Atom Collisions

NASA Astrophysics Data System (ADS)

Liao, Chunlei

1995-01-01

This dissertation addresses the problem of electron emission in highly charged ion-atom collisions. The study is carried out by measuring doubly differential cross sections (DDCS) of emitted electrons for projectiles ranging from fluorine up to gold at ejection angles (theta _{L}) from 0^circ to 70^circ with respect to the beam direction. Prominent features are a very strong forward peaked angular distribution of emitted electrons and the appearance of strong diffraction structures in the binary encounter electron (BEe) region for projectiles heavier than chlorine. This is in clear contradiction to the results found with fluorine projectiles, where the BEe production increases slightly with increasing theta_{L} and no structure is observed in the BEe region. Both can be understood in the impulse approximation as elastic scattering of quasi free target electrons in the projectile potential. Our measurements also show that the violation of q ^2 scaling of the DDCS previously established for 0^circ electron spectra persists for all emission angles and almost all electron energies. In ion-atom collisions, besides electrons from target, electrons from projectile ionization are also presented in the emitted electron spectra. Using electron-projectile coincidence technique, different collision channels can be separated. In order to eliminate the speculations of contributions from projectile related capture and loss channels, coincidence studies of diffraction structures are initiated. In the 0^circ electron spectrum of 0.3 MeV/u I^{6+} impacting on H_2, strong autoionization peaks are observed on the shoulders of the cusp peak. The energies of these autoionization lines in the projectile rest frame are determined by high-resolution electron spectroscopy, and collision mechanism is probed by electron-charge state selected projectile coincidence technique.

Testing the Isotropic Universe Using the Gamma-Ray Burst Data of Fermi/GBM

NASA Astrophysics Data System (ADS)

Řípa, Jakub; Shafieloo, Arman

2017-12-01

The sky distribution of gamma-ray bursts (GRBs) has been intensively studied by various groups for more than two decades. Most of these studies test the isotropy of GRBs based on their sky number density distribution. In this work, we propose an approach to test the isotropy of the universe through inspecting the isotropy of the properties of GRBs such as their duration, fluences, and peak fluxes at various energy bands and different timescales. We apply this method on the Fermi/Gamma-ray Burst Monitor (GBM) data sample containing 1591 GRBs. The most noticeable feature we found is near the Galactic coordinates l≈ 30^\\circ , b≈ 15^\\circ , and radius r≈ 20^\\circ {--}40^\\circ . The inferred probability for the occurrence of such an anisotropic signal (in a random isotropic sample) is derived to be less than a percent in some of the tests while the other tests give results consistent with isotropy. These are based on the comparison of the results from the real data with the randomly shuffled data samples. Considering the large number of statistics we used in this work (some of which are correlated with each other), we can anticipate that the detected feature could be a result of statistical fluctuations. Moreover, we noticed a considerably low number of GRBs in this particular patch, which might be due to some instrumentation or observational effects that can consequently affect our statistics through some systematics. Further investigation is highly desirable in order to clarify this result, e.g., utilizing a larger future Fermi/GBM data sample as well as data samples of other GRB missions and also looking for possible systematics.

The Evolution of the Surface of Symmetry of the Interplanetary Dust from 24° to 5° Elongation

NASA Astrophysics Data System (ADS)

Stenborg, Guillermo; Howard, Russell A.

2017-10-01

The white-light STEREO/SECCHI images include light scattered by dust in orbit about the Sun (the F-corona). We analyzed the evolution of the symmetry axis of the F-corona between 2007 and 2012 in the elongation range covered by the STEREO-A/HI-1 instrument (4°-24° elongation) to characterize the plane of symmetry of the zodiacal dust cloud. The symmetry axes both above and below the ecliptic plane were derived separately without assuming any particular functional form. No noticeable time dependence was observed. However, we did find an evolution with elongation of both the inclination I and the ascending node {{{Ω }}}A of the inferred plane of symmetry. Both parameters appeared fairly constant in the outer half of the elongation range studied (I=˜ 3\\buildrel{\\circ}\\over{.} 7,{{{Ω }}}A=˜ 83^\\circ ; values close to those of Venus’s orbit). Then, they start to evolve, becoming I=˜ 6^\\circ (I.e., a trend toward the solar equatorial plane) and {{{Ω }}}A=˜ 57^\\circ at about 5° elongation. This variation indicates that the zodiacal dust cloud exhibits a warped plane of symmetry, with an estimated center of symmetry at about 0.5 {R}⊙ from the Sun’s center on the side of the heliosphere containing Jupiter. We found a marginal difference between the inclination of the axes below and above the ecliptic. This is suggestive of an increased dust density distribution at certain fixed longitudes, which could be explained by the dust deposition of Kreutz Sun-grazing comets. We conjecture that the circumsolar dust is mainly affected by gravitational forces, other forces becoming dominant only where the more rapid changes occur.

Finding Distant Galactic HII Regions

NASA Astrophysics Data System (ADS)

Anderson, L. D.; Armentrout, W. P.; Johnstone, B. M.; Bania, T. M.; Balser, Dana S.; Wenger, Trey V.; Cunningham, V.

2015-12-01

The WISE Catalog of Galactic H ii Regions contains ˜2000 H ii region candidates lacking ionized gas spectroscopic observations. All candidates have the characteristic H ii region mid-infrared morphology of WISE 12 μ {{m}} emission surrounding 22 μ {{m}} emission, and additionally have detected radio continuum emission. We here report Green Bank Telescope hydrogen radio recombination line and radio continuum detections in the X-band (9 GHz; 3 cm) of 302 WISE H ii region candidates (out of 324 targets observed) in the zone 225^\\circ ≥slant {\\ell }≥slant -20^\\circ , | {\\text{}}b| ≤slant 6^\\circ . Here we extend the sky coverage of our H ii region Discovery Survey, which now contains nearly 800 H ii regions distributed across the entire northern sky. We provide LSR velocities for the 302 detections and kinematic distances for 131 of these. Of the 302 new detections, 5 have ({\\ell },{\\text{}}b,v) coordinates consistent with the Outer Scutum-Centaurus Arm (OSC), the most distant molecular spiral arm of the Milky Way. Due to the Galactic warp, these nebulae are found at Galactic latitudes >1° in the first Galactic quadrant, and therefore were missed in previous surveys of the Galactic plane. One additional region has a longitude and velocity consistent with the OSC but lies at a negative Galactic latitude (G039.183-01.422 -54.9 {km} {{{s}}}-1). With Heliocentric distances >22 kpc and Galactocentric distances >16 kpc, the OSC H ii regions are the most distant known in the Galaxy. We detect an additional three H ii regions near {\\ell }≃ 150^\\circ whose LSR velocities place them at Galactocentric radii >19 kpc. If their distances are correct, these nebulae may represent the limit to Galactic massive star formation.

Inter-annual Tropospheric Aerosol Variability in Late Twentieth Century and its Impact on Tropical Atlantic and West African Climate by Direct and Semi-direct Effects

DOE Office of Scientific and Technical Information (OSTI.GOV)

Evans, Katherine J; Hack, James J; Truesdale, John

A new high-resolution (0.9more » $$^{\\circ}$$x1.25$$^{\\circ}$$ in the horizontal) global tropospheric aerosol dataset with monthly resolution is generated using the finite-volume configuration of Community Atmosphere Model (CAM4) coupled to a bulk aerosol model and forced with recent estimates of surface emissions for the latter part of twentieth century. The surface emissions dataset is constructed from Coupled Model Inter-comparison Project (CMIP5) decadal-resolution surface emissions dataset to include REanalysis of TROpospheric chemical composition (RETRO) wildfire monthly emissions dataset. Experiments forced with the new tropospheric aerosol dataset and conducted using the spectral configuration of CAM4 with a T85 truncation (1.4$$^{\\circ}$$x1.4$$^{\\circ}$$) with prescribed twentieth century observed sea surface temperature, sea-ice and greenhouse gases reveal that variations in tropospheric aerosol levels can induce significant regional climate variability on the inter-annual timescales. Regression analyses over tropical Atlantic and Africa reveal that increasing dust aerosols can cool the North African landmass and shift convection southwards from West Africa into the Gulf of Guinea in the spring season in the simulations. Further, we find that increasing carbonaceous aerosols emanating from the southwestern African savannas can cool the region significantly and increase the marine stratocumulus cloud cover over the southeast tropical Atlantic ocean by aerosol-induced diabatic heating of the free troposphere above the low clouds. Experiments conducted with CAM4 coupled to a slab ocean model suggest that present day aerosols can shift the ITCZ southwards over the tropical Atlantic and can reduce the ocean mixed layer temperature beneath the increased marine stratocumulus clouds in the southeastern tropical Atlantic.« less

The VLBA Extragalactic Proper Motion Catalog and a Measurement of the Secular Aberration Drift

NASA Astrophysics Data System (ADS)

Truebenbach, Alexandra E.; Darling, Jeremy

2017-11-01

We present a catalog of extragalactic proper motions created using archival VLBI data and our own VLBA astrometry. The catalog contains 713 proper motions, with average uncertainties of ˜24 μas yr-1, including 40 new or improved proper motion measurements using relative astrometry with the VLBA. The observations were conducted in the X-band and yielded positions with uncertainties of ˜70 μas. We add 10 new redshifts using spectroscopic observations taken at Apache Point Observatory and Gemini North. With the VLBA Extragalactic Proper Motion Catalog, we detect the secular aberration drift—the apparent motion of extragalactic objects caused by the solar system’s acceleration around the Galactic center—at a 6.3σ significance. We model the aberration drift as a spheroidal dipole, with the square root of the power equal to 4.89 ± 0.77 μas yr-1, an amplitude of 1.69 ± 0.27 μas yr-1, and an apex at (275\\buildrel{\\circ}\\over{.} 2+/- 10\\buildrel{\\circ}\\over{.} 0, -29\\buildrel{\\circ}\\over{.} 4+/- 8\\buildrel{\\circ}\\over{.} 8). Our dipole model detects the aberration drift at a higher significance than some previous studies, but at a lower amplitude than expected or previously measured. The full aberration drift may be partially removed by the no-net-rotation constraint used when measuring archival extragalactic radio source positions. Like the cosmic microwave background dipole, which is induced by the observer’s motion, the aberration drift signal should be subtracted from extragalactic proper motions in order to detect cosmological proper motions, including the Hubble expansion, long-period stochastic gravitational waves, and the collapse of large-scale structure.

A Green Bank Telescope Survey of Large Galactic H II Regions

NASA Astrophysics Data System (ADS)

Anderson, L. D.; Armentrout, W. P.; Luisi, Matteo; Bania, T. M.; Balser, Dana S.; Wenger, Trey V.

2018-02-01

As part of our ongoing H II Region Discovery Survey (HRDS), we report the Green Bank Telescope detection of 148 new angularly large Galactic H II regions in radio recombination line (RRL) emission. Our targets are located at a declination of δ > -45^\\circ , which corresponds to 266^\\circ > {\\ell }> -20^\\circ at b=0^\\circ . All sources were selected from the Wide-field Infrared Survey Explorer Catalog of Galactic H II Regions, and have infrared angular diameters ≥slant 260\\prime\\prime . The Galactic distribution of these “large” H II regions is similar to that of the previously known sample of Galactic H II regions. The large H II region RRL line width and peak line intensity distributions are skewed toward lower values, compared with that of previous HRDS surveys. We discover seven sources with extremely narrow RRLs < 10 {km} {{{s}}}-1. If half the line width is due to turbulence, these seven sources have thermal plasma temperatures < 1100 {{K}}. These temperatures are lower than any measured for Galactic H II regions, and the narrow-line components may arise instead from partially ionized zones in the H II region photodissociation regions. We discover G039.515+00.511, one of the most luminous H II regions in the Galaxy. We also detect the RRL emission from three H II regions with diameters > 100 {pc}, making them some of the physically largest known H II regions in the Galaxy. This survey completes the HRDS H II region census in the Northern sky, where we have discovered 887 H II regions and more than doubled the size of the previously known census of Galactic H II regions.

A Ulysses Detection of Secondary Helium Neutrals

NASA Astrophysics Data System (ADS)

Wood, Brian E.; Müller, Hans-Reinhard; Witte, Manfred

2017-12-01

The Interstellar Boundary EXplorer (IBEX) mission has recently studied the flow of interstellar neutral He atoms through the solar system and discovered the existence of a secondary He flow that likely originates in the outer heliosheath. We find evidence for this secondary component in Ulysses data. By coadding hundreds of Ulysses He beam maps together to maximize signal-to-noise ratio, we identify a weak signal that is credibly associated with the secondary component. Assuming a laminar flow from infinity, we infer the following He flow parameters: V=12.8+/- 1.9 km s-1, λ =74\\buildrel{\\circ}\\over{.} 4+/- 1\\buildrel{\\circ}\\over{.} 8, β =-10\\buildrel{\\circ}\\over{.} 5+/- 4\\buildrel{\\circ}\\over{.} 1, and T=3000+/- 1100 K; where λ and β are the ecliptic longitude and latitude direction in J2000 coordinates. The secondary component has a density that is 4.9 ± 0.9% that of the primary component. These measurements are reasonably consistent with measurements from IBEX, with the exception of temperature, where our temperature is much lower than IBEX’s T = 9500 K. Even the higher IBEX temperature is suspiciously low compared to expectactions for the outer heliosheath source region. The implausibly low temperatures are due to the incorrect assumption of a laminar flow instead of a diverging one, given that the flow in the outer heliosheath source region will be deflecting around the heliopause. As for why the IBEX and Ulysses T values are different, difficulties with background subtraction in the Ulysses data are a potential source of concern, but the discrepancy may also be another effect of the improper laminar flow assumption, which could affect the IBEX and Ulysses analyses differently.

High-mass Starless Clumps in the Inner Galactic Plane: The Sample and Dust Properties

NASA Astrophysics Data System (ADS)

Yuan, Jinghua; Wu, Yuefang; Ellingsen, Simon P.; Evans, Neal J., II; Henkel, Christian; Wang, Ke; Liu, Hong-Li; Liu, Tie; Li, Jin-Zeng; Zavagno, Annie

2017-07-01

We report a sample of 463 high-mass starless clump (HMSC) candidates within -60^\\circ < l< 60^\\circ and -1^\\circ < b< 1^\\circ . This sample has been singled out from 10,861 ATLASGAL clumps. None of these sources are associated with any known star-forming activities collected in SIMBAD and young stellar objects identified using color-based criteria. We also make sure that the HMSC candidates have neither point sources at 24 and 70 μm nor strong extended emission at 24 μm. Most of the identified HMSCs are infrared dark, and some are even dark at 70 μm. Their distribution shows crowding in Galactic spiral arms and toward the Galactic center and some well-known star-forming complexes. Many HMSCs are associated with large-scale filaments. Some basic parameters were attained from column density and dust temperature maps constructed via fitting far-infrared and submillimeter continuum data to modified blackbodies. The HMSC candidates have sizes, masses, and densities similar to clumps associated with Class II methanol masers and H II regions, suggesting that they will evolve into star-forming clumps. More than 90% of the HMSC candidates have densities above some proposed thresholds for forming high-mass stars. With dust temperatures and luminosity-to-mass ratios significantly lower than that for star-forming sources, the HMSC candidates are externally heated and genuinely at very early stages of high-mass star formation. Twenty sources with equivalent radii {r}{eq}< 0.15 pc and mass surface densities {{Σ }}> 0.08 g cm-2 could be possible high-mass starless cores. Further investigations toward these HMSCs would undoubtedly shed light on comprehensively understanding the birth of high-mass stars.

Loss of a mammalian circular RNA locus causes miRNA deregulation and affects brain function.

PubMed

Piwecka, Monika; Glažar, Petar; Hernandez-Miranda, Luis R; Memczak, Sebastian; Wolf, Susanne A; Rybak-Wolf, Agnieszka; Filipchyk, Andrei; Klironomos, Filippos; Cerda Jara, Cledi Alicia; Fenske, Pascal; Trimbuch, Thorsten; Zywitza, Vera; Plass, Mireya; Schreyer, Luisa; Ayoub, Salah; Kocks, Christine; Kühn, Ralf; Rosenmund, Christian; Birchmeier, Carmen; Rajewsky, Nikolaus

2017-09-22

Hundreds of circular RNAs (circRNAs) are highly abundant in the mammalian brain, often with conserved expression. Here we show that the circRNA Cdr1as is massively bound by the microRNAs (miRNAs) miR-7 and miR-671 in human and mouse brains. When the Cdr1as locus was removed from the mouse genome, knockout animals displayed impaired sensorimotor gating-a deficit in the ability to filter out unnecessary information-which is associated with neuropsychiatric disorders. Electrophysiological recordings revealed dysfunctional synaptic transmission. Expression of miR-7 and miR-671 was specifically and posttranscriptionally misregulated in all brain regions analyzed. Expression of immediate early genes such as Fos , a direct miR-7 target, was enhanced in Cdr1as -deficient brains, providing a possible molecular link to the behavioral phenotype. Our data indicate an in vivo loss-of-function circRNA phenotype and suggest that interactions between Cdr1as and miRNAs are important for normal brain function. Copyright © 2017 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.

High rate constitutive modeling of aluminium alloy tube

NASA Astrophysics Data System (ADS)

Salisbury, C. P.; Worswick, M. J.; Mayer, R.

2006-08-01

As the need for fuel efficient automobiles increases, car designers are investigating light-weight materials for automotive bodies that will reduce the overall automobile weight. Aluminium alloy tube is a desirable material to use in automotive bodies due to its light weight. However, aluminium suffers from lower formability than steel and its energy absorption ability in a crash event after a forming operation is largely unknown. As part of a larger study on the relationship between crashworthiness and forming processes, constitutive models for 3mm AA5754 aluminium tube were developed. A nominal strain rate of 100/s is often used to characterize overall automobile crash events, whereas strain rates on the order of 1000/s can occur locally. Therefore, tests were performed at quasi-static rates using an Instron test fixture and at strain rates of 500/s to 1500/s using a tensile split Hopkinson bar. High rate testing was then conducted at rates of 500/s, 1000/s and 1500/s at 21circC, 150circC and 300circC. The generated data was then used to determine the constitutive parameters for the Johnson-Cook and Zerilli-Armstrong material models.

Low-latitude Ionospheric Research using the CIRCE Mission

NASA Astrophysics Data System (ADS)

Dymond, K.; Nicholas, A. C.; Budzien, S. A.; Stephan, A. W.

2016-12-01

The Coordinated Ionospheric Reconstruction Cubesat Experiment (CIRCE) is a dual-satellite mission consisting of two 6U CubeSats actively maintaining a lead-follow configuration in the same orbit with a launch planned for the 2018-2019 time frame. These nano-satellites will each feature two 1U ultraviolet photometers, observing the 135.6 nm emission of atomic oxygen at nighttime. The primary objective is to characterize the two-dimensional distribution of electrons in the Equatorial Ionization Anomaly (EIA). The methodology used to reconstruct the nighttime ionosphere employs continuous UV photometry from four distinct viewing angles in combination with an additional data source, such as in situ plasma density measurements or a wide-band beacon data, with advanced image space reconstruction algorithm tomography techniques. The COSMIC/FORMOSAT-3 (CF3) constellation featured six Tiny Ionospheric Photometers, a compact UV sensor design which served as the pathfinder for the CIRCE instruments. The TIP instruments on the CF3 satellites demonstrated detection of ionospheric bubbles before they had penetrated the peak of the F-region ionosphere. We present our mission concept, simulations illustrating the imaging capability of the sensor suite, and a range of science questions addressable using such a system.

Magnetic Properties and Microstructure of Some 2:17 High Temperature Magnets

NASA Astrophysics Data System (ADS)

Meng-Burany, X.; Hadjipanayis, George C.; Chui, S. T.

1997-03-01

Recent DOD demands for electric vehicle/plane applications require the use of magnets with operating temperatures > 450^circ C . Of existing high performance magnets, only the Sm(Co,Fe,Cu,Zr)z precipitation--hardened magnets have an operating temperature (300^circ C) which is close to the desired temperature and this makes these magnets potential candidates for further optimization studies. We have started a systematic study and modeling of the high temperature magnetic properties of several commercial magnets and other specially designed magnets supplied to us by Crucible Research. All the samples studied had a room temperature coercivity above 15 kOe. The coercivity was found to decrease with increasing temperature, with values of less than 4 kOe at 450^circ C , except for one sample which had a better temperature dependence with a coercivity above 6 kOe. TEM studies showed a cellular microstructure in all samples. The sample with better temperature properties had a smaller cell size but thicker cell walls. Lorentz electron microscopy studies are underway to image the domain walls and study their interaction with the cellular structure. The results of these studies will hopefully help us to understand the composition--microstructure--property relation in these magnets.

The Effect of Two Methods of Pomegranate (Punica granatum L) Juice Extraction on Quality During Storage at $4^\\circ$ C.

PubMed

Miguel, Graça; Dandlen, Susana; Antunes, Dulce; Neves, Alcinda; Martins, Denise

2004-01-01

The effect of two extraction methods of pomegranate juice on its quality and stability was evaluated. The first method consisted of separation of the seeds from fruits and centrifugation. The second method consisted of squeezing fruit halves with an electric lemon squeezer. During a period of 72 hours of cold storage at $4^\\circ$ C, the juices were evaluated for the presence of sugars, organic acids, and anthocyanins. Delphinidin 3-glucoside was identified to be the major anthocyanin present at the level of 45-69 mg/L. Among the organic acids, oxalic and tartaric acids dominated. The major sugars detected in pomegranate juice were glucose and sucrose. No significant differences in the content of sugars, organic acids, or anthocyanins in juices obtained through application of the two different extraction methods were detected, with the exception of the drastic decrease of cyanidin $3,5$ -diglucoside level in juice obtained by seed centrifugation. The pH did not show differences between treatments. Titrable acidity and the level of sugars expressed as ${}^{\\circ}$ Brix decreased after 32 and 15 hours after extraction, respectively, when juice was obtained by centrifuging the seeds.

Matériaux diélectriques à base de K_2Sr4Nb{10}O_{30} présentant des courbes \\varepsilon'_r = f (T) plates avec de hautes constantes diélectriques

NASA Astrophysics Data System (ADS)

Tribotté, B.; Desgardin, G.

1997-06-01

Type II ferroelectric ceramics are used in multilayers capacitors with high volume capacitance. Among different specifications concerning the variation of the dielectric constant versus temperature, one of the most restrictive class, the X7R one, allows only a variation of ±15 percent of the 25 ^{circ}C value of the permittivity in the wide range, -55 ^{circ}C to +125 ^{circ}C. Previous investigations have proved the interest to mix the niobate K2Sr4Nb{10}O{30}, with a Tetragonal Tungsten Bronze (TTB) structure, with perovskites as minor agents like Pb(Mg{1/3}Nb{2/3})O3, to obtain flat curves \\varepsilon'_r = f (T) with dielectric constant above 6000. To point out the mechanism leading to such curves, the influence of the introduction of different cations like Mg^{2+} or Pb^{2+} in the TTB structure has been studied. In the present work, we show that K2Sr{4}Nb{10}O{30}-based materials, without the presence of perovskite phase from XRD, can also exhibit \\varepsilon'_r= f (T) curves with a flat profile. Les céramiques ferroélectriques de type II sont couramment utilisées dans les condensateurs multicouches à forte capacité volumique. Parmi différentes classes concernant la variation de la constante diélectrique en fonction de la température, une des plus sévères, la X7R, autorise seulement une variation de ±15% de la capacité par rapport à celle à 25 ^{circ}C dans un large domaine de température, de -55 ^{circ}C à +125 ^{circ}C. Des études récentes ont prouvé l'intérêt de mélanger le niobate K2Sr4Nb{10}O{30}, de structure de type Bronze Quadratique de Tungstène (BQT), avec des pérovskites en faible proportion comme Pb(Mg{1/3}Nb{2/3})O3, pour obtenir des courbes plates \\varepsilon'_r = f (T), correspondant à des constantes moyennes superieures à 6000. Pour mettre en évidence le mécanisme conduisant à de telles courbes, nous avons étudié l'influence de l'introduction de différents cations comme Mg^{2+} ou Pb^{2+} dans la structure BQT. Dans ce travail, nous montrons que des matériaux à base de K2Sr4Nb{10}O{30}, sans présence simultanée de phase pérovskite d'après la diffraction des rayons X, peuvent conduire à des courbes \\varepsilon'_r= f (T) à caractère plat.

A new AMS facility in Caserta/Italy

NASA Astrophysics Data System (ADS)

Terrasi, F.; Rogalla, D.; De Cesare, N.; D'Onofrio, A.; Lubritto, C.; Marzaioli, F.; Passariello, I.; Rubino, M.; Sabbarese, C.; Casa, G.; Palmieri, A.; Gialanella, L.; Imbriani, G.; Roca, V.; Romano, M.; Sundquist, M.; Loger, R.

2007-06-01

A new AMS system has been installed at Center for Isotopic Research on Cultural and Environmental Heritage (CIRCE) in Caserta/Italy. It was built by National Electrostatics Corp. Middleton, WI/USA, and arrived at CIRCE in the middle of January 2005; the installation and the acceptance tests were completed at the end of February 2005. At first, the system is intended for Radiocarbon AMS; for future Al and Be AMS only minor upgrades are needed and the magnets are designed to bend heavy isotopes like Uranium. Concerning Radiocarbon AMS, the first measurements of unknown samples, prepared in the internal preparation laboratory, already yielded results of high precision and 14C dating is in full swing.

On the topological stability of continuous functions in certain spaces related to Fourier series

NASA Astrophysics Data System (ADS)

Lebedev, Vladimir V.

2010-04-01

We show that the following properties of a continuous function f on the circle \\mathbb T are equivalent: the sequence \\widehat{f\\circ h} of the Fourier coefficients of the superposition f\\circ h belongs to the weak l^1 for every homeomorphism h of the circle onto itself; f is a function of bounded quadratic variation. We obtain similar results for spaces of functions whose sequence of Fourier coefficients belongs to the weak l^p, 1, for spaces A_p of functions f with \\widehat{f}\\in l^p, for the Sobolev spaces W_2^\\lambda, and for other spaces of functions on \\mathbb T. Under rather general assumptions on a space \\mathbb X of functions on the circle, we give a necessary condition for a given continuous function f to stay in \\mathbb X for every change of variable. We also consider the multidimensional case, which is essentially different from the one-dimensional case. In particular, we show that if p<2 and f is a continuous function on the torus \\mathbb T^d, d\\ge2, such that f\\circ h\\in A_p(\\mathbb T^d) for every homeomorphism h\\colon \\mathbb T^d\\to\\mathbb T^d, then f is constant.

CLAS g10 Analysis on Single Photopion Productions from Deuterium

NASA Astrophysics Data System (ADS)

Chen, Wei

2006-04-01

Photopion productions from nucleons are essential probes of the transition from meson-nucleon degrees of freedom to quark-gluon degrees of freedom in exclusive processes. The cross sections of these processes are also advantageous, for the investigation of the oscillatory behavior around the quark counting prediction, since they decrease relatively slower with energy compared with other photon-induced processes. Recent data from JLab experiment E94-104 [1,2] show dramatic change in the scaled differential cross-section from the γn ->&-circ;p and γp ->&+circ;n processes in the center of mass energy between 1.8 GeV to about 2.4 GeV. We are carrying out a CLAS approved analysis [3] of the JLab CLAS g10 data on the γn ->&-circ;p to investigate this dramatic behavior in much finer photon energy bins. Furthermore, the angular dependence of the scaling behavior for this process will also be studied in detail. We will report the status of the analysis in this presentation. References: [1] L.Y. Zhu et al., Phys. Rev. Lett. 91, 022003 (2003).[2] L.Y. Zhu et al., Phys. Rev. C 71, 044603 (2005); nucl-ex/0409018.[3] http://www.tunl.duke.edu/˜mep/clas/caapion.pdf

The Dusty Galactic Center as Seen by SCUBA-2

NASA Astrophysics Data System (ADS)

Parsons, H.; Dempsey, J. T.; Thomas, H. S.; Berry, D.; Currie, M. J.; Friberg, P.; Wouterloot, J. G. A.; Chrysostomou, A.; Graves, S.; Tilanus, R. P. J.; Bell, G. S.; Rawlings, M. G.

2018-02-01

We present new JCMT SCUBA-2 observations of the Galactic Center region from 355^\\circ < l< 5^\\circ and b< +/- 1^\\circ , covering 10 × 2 square degrees along the Galactic Plane to a depth of 43 mJy beam‑1 at 850 μm and 360 mJy beam‑1 at 450 μm. We describe the mapping strategy and reduction method used. We present 12CO(3-2) observations of selected regions in the field. We derive the molecular-line conversion factors (mJy beam‑1 per K km s‑1) at 850 and 450 μm, which are then used to obtain the amount of contamination in the continuum maps due to 12CO(3-2) emission in the 850 μm band. Toward the fields where the CO contamination has been accounted for, we present an 850 μm CO-corrected compact source catalog. Finally, we look for possible physical trends in the CO contamination with respect to column density, mass, and concentration. No trends were seen in the data despite the recognition of three contributors to CO contamination: opacity, shocks, and temperature, which would be expected to relate to physical conditions. These SCUBA-2 Galactic Center data and catalog are available via https://doi.org/10.11570/17.0009.

Polarization Spectroscopy and Collisions in NaK

NASA Astrophysics Data System (ADS)

Wolfe, C. M.; Ashman, S.; Huennekens, J.; Beser, B.; Bai, J.; Lyyra, A. M.

2009-05-01

We report current work to study transfer of population and orientation in collisions of NaK molecules with argon and potassium atoms using polarization labeling (PL) and laser-induced fluorescence (LIF) spectroscopy. In the PL experiment, a circularly polarized pump laser excites a specific NaK A^1&+circ;(v=16, J) <- X^1&+circ;(v=0, J±1) transition, creating an orientation (non-uniform MJ level distribution) in both levels. The linear polarized probe laser is scanned over various 3^1π(v=8, J' ±1) <- A^1&+circ;(v=16, J') transitions. The probe laser passes through a crossed linear polarizer before detection, and signal is recorded if the probe laser polarization has been modified by the vapor (which occurs when it comes into resonance with an oriented level). In addition to strong direct transitions (J' = J), we also observe weak collisional satellite lines (J' = J±n with n = 1, 2, 3, ...) indicating that orientation is transferred to adjacent rotational levels during a collision. An LIF experiment (with linear polarized pump and probe beams) gives information on the collisional transfer of population. From these data, cross sections for both processes can be determined. We experimentally distinguish collisions of NaK with argon atoms from collisions with alkali atoms.

Collisional Transfer of Population and Orientation in NaK

NASA Astrophysics Data System (ADS)

Wolfe, C. M.; Ashman, S.; Huennekens, J.; Beser, B.; Bai, J.; Lyyra, A. M.

2010-03-01

We report current work to study transfer of population and orientation in collisions of NaK molecules with argon and potassium atoms using polarization labeling (PL) and laser- induced fluorescence (LIF) spectroscopy. In the PL experiment, a circularly polarized pump laser excites a specific NaK A^1&+circ;(v'=16, J') <- X^1&+circ;(v''=0, J'±1) transition, creating an orientation (non-uniform MJ' level distribution) in both levels. The linearly polarized probe laser is scanned over various 3^1π(v, J'±1) <- A^1&+circ;(v'=16, J') transitions. The probe laser passes through a crossed linear polarizer before detection, and signal is recorded if the probe laser polarization has been modified by the vapor (which occurs when it comes into resonance with an oriented level). Using both spectroscopic methods, analysis of weak collisional satellite lines adjacent to these directly populated lines, as a function of argon buffer gas pressure and cell temperature, allows us to discern separately the effects collisions with argon atoms and potassium atoms have on the population and orientation of the molecule. In addition, code has been written which provides a theoretical analysis of the process, through a solution of the density matrix equations of motion for the system.

Multimodal RNA-seq using single-strand, double-strand, and CircLigase-based capture yields a refined and extended description of the C. elegans transcriptome.

PubMed

Lamm, Ayelet T; Stadler, Michael R; Zhang, Huibin; Gent, Jonathan I; Fire, Andrew Z

2011-02-01

We have used a combination of three high-throughput RNA capture and sequencing methods to refine and augment the transcriptome map of a well-studied genetic model, Caenorhabditis elegans. The three methods include a standard (non-directional) library preparation protocol relying on cDNA priming and foldback that has been used in several previous studies for transcriptome characterization in this species, and two directional protocols, one involving direct capture of single-stranded RNA fragments and one involving circular-template PCR (CircLigase). We find that each RNA-seq approach shows specific limitations and biases, with the application of multiple methods providing a more complete map than was obtained from any single method. Of particular note in the analysis were substantial advantages of CircLigase-based and ssRNA-based capture for defining sequences and structures of the precise 5' ends (which were lost using the double-strand cDNA capture method). Of the three methods, ssRNA capture was most effective in defining sequences to the poly(A) junction. Using data sets from a spectrum of C. elegans strains and stages and the UCSC Genome Browser, we provide a series of tools, which facilitate rapid visualization and assignment of gene structures.

ALMA and GMRT Constraints on the Off-axis Gamma-Ray Burst 170817A from the Binary Neutron Star Merger GW170817

NASA Astrophysics Data System (ADS)

Kim, S.; Schulze, S.; Resmi, L.; González-López, J.; Higgins, A. B.; Ishwara-Chandra, C. H.; Bauer, F. E.; de Gregorio-Monsalvo, I.; De Pasquale, M.; de Ugarte Postigo, A.; Kann, D. A.; Martín, S.; Oates, S. R.; Starling, R. L. C.; Tanvir, N. R.; Buchner, J.; Campana, S.; Cano, Z.; Covino, S.; Fruchter, A. S.; Fynbo, J. P. U.; Hartmann, D. H.; Hjorth, J.; Jakobsson, P.; Levan, A. J.; Malesani, D.; Michałowski, M. J.; Milvang-Jensen, B.; Misra, K.; O’Brien, P. T.; Sánchez-Ramírez, R.; Thöne, C. C.; Watson, D. J.; Wiersema, K.

2017-12-01

Binary neutron-star mergers (BNSMs) are among the most readily detectable gravitational-wave (GW) sources with the Laser Interferometer Gravitational-wave Observatory (LIGO). They are also thought to produce short γ-ray bursts (SGRBs) and kilonovae that are powered by r-process nuclei. Detecting these phenomena simultaneously would provide an unprecedented view of the physics during and after the merger of two compact objects. Such a Rosetta Stone event was detected by LIGO/Virgo on 2017 August 17 at a distance of ∼44 Mpc. We monitored the position of the BNSM with Atacama Large Millimeter/submillimeter Array (ALMA) at 338.5 GHz and the Giant Metrewave Radio Telescope (GMRT) at 1.4 GHz, from 1.4 to 44 days after the merger. Our observations rule out any afterglow more luminous than 3× {10}26 {erg} {{{s}}}-1 {{Hz}}-1 in these bands, probing >2–4 dex fainter than previous SGRB limits. We match these limits, in conjunction with public data announcing the appearance of X-ray and radio emission in the weeks after the GW event, to templates of off-axis afterglows. Our broadband modeling suggests that GW170817 was accompanied by an SGRB and that the γ-ray burst (GRB) jet, powered by {E}{AG,{iso}}∼ {10}50 erg, had a half-opening angle of ∼ 20^\\circ , and was misaligned by ∼ 41^\\circ from our line of sight. The data are also consistent with a more collimated jet: {E}{AG,{iso}}∼ {10}51 erg, {θ }1/2,{jet}∼ 5^\\circ ,{θ }{obs}∼ 17^\\circ . This is the most conclusive detection of an off-axis GRB afterglow and the first associated with a BNSM-GW event to date. We use the viewing angle estimates to infer the initial bulk Lorentz factor and true energy release of the burst.

Proton Resonance Spectroscopy in CALCIUM-40.

NASA Astrophysics Data System (ADS)

Warthen, Barry Joseph

1987-09-01

The differential cross sections for the ^{39}K(p,p_{ rm o})^{39}K and ^{39}K(p,alpha_ {rm o})^{36}Ar reactions have been measured for E_{ rm p} = 1.90 to 4.02 MeV at laboratory angles theta = 90^ circ, 108^circ, 150^circ and 165^ circ. Data were taken with the Triangle Universities Nuclear Laboratory (TUNL) KN Van de Graaff accelerator and the associated high resolution system. The targets consisted of 1-2 mug/cm^2 of potassium carbonate (K_2CO _3), enriched to 99.97% ^{39}K, evaporated onto gold coated carbon backings. Excitation functions were measured in proton energy steps varying from 100 to 400 eV. The energy region studied corresponds to an excitation energy range in the ^{40}Ca nucleus of E_{rm x} = 10.2 to 12.3 MeV. A multi-level multi-channel R-matrix based computer code was used to fit the experimental excitation functions. Resonance parameters obtained include resonance energy, spin, parity, partial widths, and channel spin and orbital angular momentum mixing ratios. Of the 248 resonances observed in the proton channel, 148 were also observed in the alpha channel. A fit to the observed level density yielded a nuclear temperature of 1.5 MeV. The data were compared with predictions of statistical theories of energy levels for both level spacing and reduced width distributions. The alpha reduced widths agree with the Porter-Thomas distribution and suggest that only 5-10% of the states with alpha widths were not observed. The summed strength in each of the alpha channels represents a significant fraction of the Wigner limit for these channels. The proton channels, on the other hand, generally have much smaller fractions. The two proton s-wave strength functions are equal and thus show no evidence for spin-exchange forces in the nucleon-nucleus interaction.

The Continual Intercomparison of Radiation Codes: Results from Phase I

NASA Technical Reports Server (NTRS)

Oreopoulos, Lazaros; Mlawer, Eli; Delamere, Jennifer; Shippert, Timothy; Cole, Jason; Iacono, Michael; Jin, Zhonghai; Li, Jiangnan; Manners, James; Raisanen, Petri;

Aquaporin-1 shifts the critical transmural pressure to compress the aortic intima and change transmural flow: theory and implications.

PubMed

Joshi, Shripad; Jan, Kung-Ming; Rumschitzki, David S

2015-12-01

Transmural-pressure (ΔP)-driven plasma advection carries macromolecules into the vessel wall, the earliest prelesion atherosclerotic event. The wall's hydraulic conductivity, LP, the water flux-to-ΔP ratio, is high at low pressures, rapidly decreases, and remains flat to high pressures (Baldwin AL, Wilson LM. Am J Physiol Heart Circ Physiol 264: H26-H32, 1993; Nguyen T, Toussaint, Xue JD, Raval Y, Cancel CB, Russell LM, Shou S, Sedes Y, Sun O, Yakobov Y, Tarbell JM, Jan KM, Rumschitzki DS. Am J Physiol Heart Circ Physiol 308: H1051-H1064, 2015; Tedgui A, Lever MJ. Am J Physiol Heart Circ Physiol. 247: H784-H791, 1984. Shou Y, Jan KM, Rumschitzki DS. Am J Physiol Heart Circ Physiol 291: H2758-H2771, 2006) due to pressure-induced subendothelial intima (SI) compression that causes endothelial cells to partially block internal elastic laminar fenestrae. Nguyen et al. showed that rat and bovine aortic endothelial cells express the membrane protein aquaporin-1 (AQP1) and transmural water transport is both transcellular and paracellular. They found that LP lowering by AQP1 blocking was perplexingly ΔP dependent. We hypothesize that AQP1 blocking lowers average SI pressure; therefore, a lower ΔP achieves the critical force/area on the endothelium to partially block fenestrae. To test this hypothesis, we improve the approximate model of Huang et al. (Huang Y, Rumschitzki D, Chien S, Weinbaum SS. Am J Physiol Heart Circ Physiol 272: H2023-H2039, 1997) and extend it by including transcellular AQP1 water flow. Results confirm the observation by Nguyen et al.: wall LP and water transport decrease with AQP1 disabling. The model predicts 1) low-pressure LP experiments correctly; 2) AQP1s contribute 30-40% to both the phenomenological endothelial + SI and intrinsic endothelial LP; 3) the force on the endothelium for partial SI decompression with functioning AQP1s at 60 mmHg equals that on the endothelium at ∼43 mmHg with inactive AQP1s; and 4) increasing endothelial AQP1 expression increases wall LP and shifts the ΔP regime where LP drops to significantly higher ΔP than in Huang et al. Thus AQP1 upregulation (elevated wall LP) might dilute and slow low-density lipoprotein binding to SI extracellular matrix, which may be beneficial for early atherogenesis. Copyright © 2015 the American Physiological Society.

Solid Solution, Mass Transport, and Crystal Growth Studies of Cadmium Iron Selenide.

NASA Astrophysics Data System (ADS)

Huang, Xuejun

Cadmium iron selenide, a semimagnetic semiconductor, has been investigated. Solid solubilities of iron in CdSe were determined at temperatures between 650^ circC and 1100^circC, using the X-ray diffraction Debye-Scherrer powder technique. The solubility limits of Fe in CdSe increase with the temperatures to reach a maximum of about 19.5 mole % FeSe_ {1.24} at 925^circ C, and then decrease with further increasing temperature. Solidification phenomena of the Cd-Fe-Se solid solutions were observed employing optical microscopy, which reveals a typical divorced, eutectic type, nonequilibrium solidification. The combination of the X-ray diffraction and the microscopic investigations yielded a pseudo-binary, eutectic type phase diagram of the Cd-Fe-Se system. Partial pressures of the major vapor species in the Cd-Fe-Se physical and the Cd-Fe-Se-Iodine chemical vapor transport systems were calculated. The partial pressure of gaseous iron species of the PVT system may be neglected compared to those of Cd and Se_2^ecies. This suggests that cadmium iron selenide crystals cannot be grown by the PVT method. For the PVT experiments, using the as-synthesized (CdSe)_ {0.90}(FeSe_{1.24})_{0.10 } source materials, crystals with compositions of 6-8 mole % FeSe_{1.24} were grown at a source temperature of 1000^ circC and a DeltaT of 12^circC. These result are contradictory to the thermodynamic predictions, and were further investigated employing specially purified source materials. Iron contents in the crystals grown in these experiments are close to zero. The transport of iron in the initial mass transport experiments may be due to the chemical impurities (most likely the metal chlorides) in the as-synthesized source materials. Mass transport experiments of the Cd-Fe-Se-Iodine CVT system were performed as a function of source temperatures, the degrees of undercooling (DeltaT), and initial iodine pressures. Promising parameters for the growth of cadmium iron selenide single crystals by the CVT method, e.g., the source temperatures of 800-850 ^circC, initial iodine pressures of 0.5-1.0 atm, and DeltaT of 10 -20^circC, were established. Mass fluxes of cadmium iron selenide were computed using a one -dimensional diffusion equation. The overall trends of the computed mass flux as a function of growth conditions are consistent with the experimental results. However, differences between the theoretical and experimental mass fluxes may be due to the uncertainties of the thermochemical data used and the approximations made in these estimations. Single crystals of cadmium iron selenide with compositions of 6.5-8.5 mole % FeSe_{1.24 } and of about 5 mm edge lengths were successfully grown from the (CdSe)_{0.90 }(FeSe_{1.24})_{0.10} source materials by the CVT method. Compositions of various portions of the bulk crystals are nearly constant along its axis within the error limits, indicating that the crystals possess reasonable compositional uniformity. The indices of the crystal surfaces were obtained by the X -ray diffraction Laue method. The (0001) and (1011) planes usually developed as the natural facets on the surfaces, and (1010) and(1120) as the cleavage planes. A promising chemical etchant for cadmium iron selenide crystals was developed, consisting of about 20 vol. % concentrated HNO_3, 60 vol. % glacial CH _3COOH, and 20 vol. % concentrated H _2SO_4 acids. Etch pit densities of the grown crystals are in the range of 5times10 ^4-rm5times10^5/cm ^2..

Processing, Characteristics, and Optical Properties of Wet Chemically Derived Planar Dielectric Waveguides.

NASA Astrophysics Data System (ADS)

Weisenbach, Lori Ann

An experimental study of the processing and attenuation characteristics of solution derived, thin film, planar waveguides was made. In this study, the densification and attenuation characteristics of a variety of compositions were compared. To insure that the effects measured reflected compositional differences and not processing artifacts, guidelines for the reproducible fabrication of optical quality layers, irrespective of composition, were established. A broad range of compositions were prepared and an effort was made to keep the various solution syntheses as simple and similar as possible. The densification and attenuation of binary SiO _2-TiO_2 compositions was measured, then compared to the densification and attenuation of SiO_2-TiO_2 -R_{rm x}O _{rm y} (where R = Al or Zn) ternary compositions. Film densification was not strongly dependent upon composition, and was successfully modelled using the Lorentz-Lorenz relation, assuming the open volume in the undensified films were filled with adsorbed water. The attenuation measured at 632.8 nm did not vary with composition, except for the Zn ternary samples. Waveguides with losses of <1dB/cm could be fabricated from all other compositions. Waveguide attenuation was measured for films of different thickness, and compared to modelled predictions. The attenuation increased as layer thickness decreased, suggesting the predominance of the surface scattering contribution. To confirm that absorption losses were negligible, the wavelength dependence of the waveguides was measured. The wavelength dependence varied with composition, suggesting the absorption varied with composition. Possible mechanisms of absorption in the waveguides were discussed; the interaction of the atmosphere with the film structure is proposed as the cause of the deterioration. Film development for the binary SiO_2 -TiO_2 films was also studied as a function of increased firing time at 500^ circC. Multiple firings at 500^ circC increased the film density and the resistance to deterioration, but also increased the surface roughness of the films. Increased surface roughness, increased the scattering losses measured for the guide. The application of solution derived thin films was demonstrated with the successful fabrication of a novel optical device. The fabrication of the Single Leakage -Channel Grating Coupler illustrated specific design tolerances could be met and the resulting device performance near the theoretical maximum.

A Decade of MWC 758 Disk Images: Where Are the Spiral-arm-driving Planets?

NASA Astrophysics Data System (ADS)

Ren, Bin; Dong, Ruobing; Esposito, Thomas M.; Pueyo, Laurent; Debes, John H.; Poteet, Charles A.; Choquet, Élodie; Benisty, Myriam; Chiang, Eugene; Grady, Carol A.; Hines, Dean C.; Schneider, Glenn; Soummer, Rémi

2018-04-01

Large-scale spiral arms have been revealed in scattered light images of a few protoplanetary disks. Theoretical models suggest that such arms may be driven by and corotate with giant planets, which has called for remarkable observational efforts to look for them. By examining the rotation of the spiral arms for the MWC 758 system over a 10 year timescale, we are able to provide dynamical constraints on the locations of their perturbers. We present reprocessed Hubble Space Telescope (HST)/NICMOS F110W observations of the target in 2005, and the new Keck/NIRC2 L‧-band observations in 2017. MWC 758's two well-known spiral arms are revealed in the NICMOS archive at the earliest observational epoch. With additional Very Large Telescope (VLT)/SPHERE data, our joint analysis leads to a pattern speed of 0\\buildrel{\\circ}\\over{.} {6}-0\\buildrel{\\circ\\over{.} 6}+3\\buildrel{\\circ\\over{.} 3} {yr}}-1 at 3σ for the two major spiral arms. If the two arms are induced by a perturber on a near-circular orbit, its best-fit orbit is at 89 au (0.″59), with a 3σ lower limit of 30 au (0.″20). This finding is consistent with the simulation prediction of the location of an arm-driving planet for the two major arms in the system.

Low-latitude ionospheric research using the CIRCE Mission: instrumentation overview

NASA Astrophysics Data System (ADS)

Dymond, K. F.; Nicholas, A. C.; Budzien, S. A.; Stephan, A. W.; Marquis, P.; Brown, C. M.; Finne, T.; Wolfram, K. D.

2017-08-01

The Coordinated Ionospheric Reconstruction Cubesat Experiment (CIRCE) is a dual-satellite mission consisting of two 6U CubeSats actively maintaining a lead-follow configuration in the same orbit with a launch planned for the 2018-2019 time-frame. These nanosatellites will each feature two 1U size ultraviolet photometers, observing the 135.6 nm emission of atomic oxygen at nighttime. The primary objective is to characterize the two-dimensional distribution of electrons in the orbital plane of the vehicles with special emphasis on studying the morphology of the Equatorial Ionization Anomaly (EIA). The methodology used to reconstruct the nighttime ionosphere employs continuous UV photometry from four distinct viewing angles in combination with an additional data source, such as in situ plasma density measurements or a wide-band beacon data, with advanced image space reconstruction algorithm tomography techniques. The COSMIC/FORMOSAT-3 (CF3) constellation featured six Tiny Ionospheric Photometers, compact UV sensors which served as the pathfinder for the CIRCE instruments. The TIP instruments on the CF3 satellites demonstrated detection of ionospheric bubbles before they had penetrated the peak of the F-region ionosphere, showed the temporal evolution of the EIA, and observed a Medium Scale Travelling Ionospheric Disturbance. We present our mission concept, some pertinent information regarding the instrument design, the results of simulations illustrating the imaging capability of the sensor suite, and a range of science questions addressable using such a system.

Photometric and spectral studies of the eclipsing polar CRTS CSS081231 J071126+440405

NASA Astrophysics Data System (ADS)

Borisov, N. V.; Gabdeev, M. M.; Shimansky, V. V.; Katysheva, N. A.; Kolbin, A. I.; Shugarov, S. Yu.; Goranskij, V. P.

2016-01-01

We present the results of the study of the eclipsing polar CRTS CSS081231 J071126+440405. Photometric observations allowed us to refine the orbital period of the system P_ circ = 0_ \\cdot ^d 0.08137673. Considerable changes in the appearance of the object's spectra have occurred over the period of September 20-21, 2001: the slope of the continuum changed from "red" to "blue", and the variability of the line profiles over the duration of the orbital period has also changed. Doppler maps have shown a shift of the emission line-forming region along the accretion stream closer to the white dwarf. We measured the duration of the eclipse of the system and imposed constraints on the inclination angle 78_ \\cdot ^ circ 7 < i < 79_ \\cdot ^ circ 3. The derived radial velocity amplitude was used to obtain the basic parameters of the system: M 1 = 0.86 ± 0.08 M ⊙, M 2 = 0.18 ± 0.02 M ⊙, q = 0.21 ± 0.01, R L2 = 0.20 ± 0.03 R ⊙, A = 0.80 ± 0.03 R ⊙. The spectra of the object exhibit cyclotron harmonics. Their comparison with model spectra allowed us to determine the parameters of the accretion column: B = 31-34 MG, T e = 10-12 keV, θ = 80-90°, and Λ = 105.

A neutron-star-driven X-ray flash associated with supernova SN 2006aj.

PubMed

Mazzali, Paolo A; Deng, Jinsong; Nomoto, Ken'ichi; Sauer, Daniel N; Pian, Elena; Tominaga, Nozomu; Tanaka, Masaomi; Maeda, Keiichi; Filippenko, Alexei V

2006-08-31

Supernovae connected with long-duration gamma-ray bursts (GRBs) are hyper-energetic explosions resulting from the collapse of very massive stars ( approximately 40 M\\circ, where M\\circ is the mass of the Sun) stripped of their outer hydrogen and helium envelopes. A very massive progenitor, collapsing to a black hole, was thought to be a requirement for the launch of a GRB. Here we report the results of modelling the spectra and light curve of SN 2006aj (ref. 9), which demonstrate that the supernova had a much smaller explosion energy and ejected much less mass than the other GRB-supernovae, suggesting that it was produced by a star whose initial mass was only approximately 20 M\\circ. A star of this mass is expected to form a neutron star rather than a black hole when its core collapses. The smaller explosion energy of SN 2006aj is matched by the weakness and softness of GRB 060218 (an X-ray flash), and the weakness of the radio flux of the supernova. Our results indicate that the supernova-GRB connection extends to a much broader range of stellar masses than previously thought, possibly involving different physical mechanisms: a 'collapsar' (ref. 8) for the more massive stars collapsing to a black hole, and magnetic activity of the nascent neutron star for the less massive stars.

Detecting and characterizing circular RNAs

PubMed Central

Jeck, William R.; Sharpless, Norman E.

2014-01-01

Circular RNA transcripts were first identified in the early 1990s but knowledge of these species has remained limited, as their study has been difficult through traditional methods of RNA analysis. Now, novel bioinformatic approaches coupled with biochemical enrichment strategies and deep sequencing have allowed comprehensive studies of circular RNA species. Recent studies have revealed thousands of endogenous circular RNAs (circRNAs) in mammalian cells, some of which are highly abundant and evolutionarily conserved. Evidence is emerging that some circRNAs might regulate microRNA (miRNA) function, and roles in transcriptional control have also been suggested. Therefore, study of this class of non-coding RNAs has potential implications for therapeutic and research applications. We believe the key future challenge to the field will be to understand the regulation and function of these unusual molecules. PMID:24811520

Injector Design for a Model Electron Ring at the University of Maryland

NASA Astrophysics Data System (ADS)

Godlove, T.; Bernal, S.; Deng, J. J.; Li, Y.; Reiser, M.; Wang, J. G.; Zou, Y.

1997-05-01

A model electron recirculator is being developed at the University of Maryland. It employs a 10-keV, space-charge-dominated beam injected into a 1.8-m radius ring equipped with a strong-focusing lattice based on printed-circuit quadrupoles and dipoles. The motivation and general features are described in separate papers. Here we describe the design for injecting a single-turn bunch into the ring. The system includes a low-emittance e-gun, matching section, pulsed dipole and Panofsky quadrupole. The dipole at the injection point must deflect the beam -10^circ during entry and +10^circ after entry, with about 25 ns transition time. The Panofsky quadrupole must be off during entry and on for subsequent laps, with a similar rise time.

Measuring the charged pion polarizability in the gamma gamma -> pi+pi- reaction

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lawrence, David W.; Miskimen, Rory A.; Mushkarenkov, Alexander Nikolaevich

2013-08-01

Development has begun of a new experiment to measure the charged pion polarizabilitymore » $$\\alpha_{\\pi}-\\beta_{\\pi}$$. The charged pion polarizability ranks among the most important tests of low-energy QCD presently unresolved by experiment. Analogous to precision measurements of $$\\pi^{\\circ}\\rightarrow\\gamma\\gamma$$ that test the intrinsic odd-parity (anomalous) sector of QCD, the pion polarizability tests the intrinsic even-parity sector of QCD. The measurement will be performed using the $$\\gamma\\gamma\\rightarrow\\pi^{+{}}\\pi^{-{}}$$ cross section accessed via the Primakoff mechanism on nuclear targets using the GlueX detector in Hall D at Jefferson Lab. The linearly polarized photon source in Hall-D will be utilized to separate the Primakoff cross-section from coherent $$\\rho^{\\circ}$$ production.« less

An S 4 model inspired from self-complementary neutrino mixing

NASA Astrophysics Data System (ADS)

Zhang, Xinyi

2018-03-01

We build an S 4 model for neutrino masses and mixings based on the self-complementary (SC) neutrino mixing pattern. The SC mixing is constructed from the self-complementarity relation plus {δ }CP}=-\\tfrac{π }{2}. We elaborately construct the model at a percent level of accuracy to reproduce the structure given by the SC mixing. After performing a numerical study on the model’s parameter space, we find that in the case of normal ordering, the model can give predictions on the observables that are compatible with their 3σ ranges, and give predictions for the not-yet observed quantities like the lightest neutrino mass m 1 ∈ [0.003, 0.010] eV and the Dirac CP violating phase {δ }CP}\\in [256.72^\\circ ,283.33^\\circ ].

Determination of Phobos' rotational parameters by an inertial frame bundle block adjustment

NASA Astrophysics Data System (ADS)

Burmeister, Steffi; Willner, Konrad; Schmidt, Valentina; Oberst, Jürgen

2018-01-01

A functional model for a bundle block adjustment in the inertial reference frame was developed, implemented and tested. This approach enables the determination of rotation parameters of planetary bodies on the basis of photogrammetric observations. Tests with a self-consistent synthetic data set showed that the implementation converges reliably toward the expected values of the introduced unknown parameters of the adjustment, e.g., spin pole orientation, and that it can cope with typical observational errors in the data. We applied the model to a data set of Phobos using images from the Mars Express and the Viking mission. With Phobos being in a locked rotation, we computed a forced libration amplitude of 1.14^circ ± 0.03^circ together with a control point network of 685 points.

Grain Oriented Perovskite Layer Structure Ceramics for High-Temperature Piezoelectric Applications

NASA Astrophysics Data System (ADS)

Fuierer, Paul Anton

The perovskite layer structure (PLS) compounds have the general formula (A^{2+}) _2(B^{5+})_2 O_7, or (A^ {3+})_2(B^{4+ })_2O_7, and crystallize in a very anisotropic layered structure consisting of parallel slabs made up of perovskite units. Several of these compounds possess the highest Curie temperatures (T_{rm c} ) of any known ferroelectrics. Two examples are Sr_2Nb_2O _7 with T_{rm c} of 1342^circC, and La_2Ti_2O _7 with T_{rm c} of 1500^circC. This thesis is an investigation of PLS ceramics and their feasibility as a high temperature transducer material. Piezoelectricity in single crystals has been measured, but the containerless float zone apparatus necessary to grow high quality crystals of these refractory compounds is expensive and limited to a small number of research groups. Previous attempts to pole polycrystalline Sr_2Nb _2O_7 have failed, and to this point piezoelectricity has been absent. The initiative taken in this research was to investigate PLS ceramics by way of composition and processing schemes such that polycrystalline bodies could be electrically poled. The ultimate objective then was to demonstrate piezoelectricity in PLS ceramics, especially at high temperatures. Donor-doping of both La_2Ti _2O_7 and Sr_2Nb_2O _7 was found to increase volume resistivities at elevated temperatures, an important parameter to consider during the poling process. Sr_2Ta _2O_7 (T _{rm c} = -107 ^circC) was used to make solid solution compositions with moderately high Curie temperatures, of about 850^circC, and lower coercive fields. A hot-forging technique was employed to produce ceramics with high density (>99% of theoretical) and high degree of grain orientation (>90%). Texturing was characterized by x-ray diffraction and microscopy. Considerable anisotropy was observed in physical and electrical properties, including thermal expansion, resistivity, dielectric constant, and polarization. The direction perpendicular to the forging axis proved to be the ferroelectric "easy" direction, indicating that the polar axis lies in the plane of the plate-like grains. Hot-forged samples were poled at 40 to 50 KV/cm at 200^circC. Several compounds in the La_2Ti_2O _7-Sr_2Nb _2O_7-Sr _2Ta_2O_7 ternary system were shown to be piezoelectric. From appropriately oriented cuts, the dielectric, elastic, and piezoelectric coefficients were determined by the resonance method. Relative to commercial piezoelectric ceramics such as Pb(ZrTi)O_3, hot-forged PLS ceramics were found to have high frequency constants, low compliance, low electromechanical coupling, low piezoelectric coefficients, and high mechanical quality factors. For Sr_2(Nb_{0.5 }Ta_{0.5})_2 O_7, N_{32 } = 2216 Hz-m, s_{32} = 8.37 times 10^ {-12} m^2/N, k _{32} = 3.60%, d _{32} = 2.40 pC/N, and Q _{rm m} = 5290. This material was also shown to resist depoling when exposed to temperatures as high as 650^circC. Hot-forged PLS compounds offer a new family of ferroelectric ceramics that may prove to be useful as high temperature materials for electronic transducers or filters.

Thermoacoustic Emission Induced by Deeply-Penetrating Radiation and its Application to Biomedical Imaging.

NASA Astrophysics Data System (ADS)

Liew, Soo Chin

Thermoacoustic emissions induced by 2450 MHz microwave pulses in water, tissue-simulating phantoms and dog kidneys have been detected. The analytic signal magnitude has been employed in generating 'A-mode' images with excellent depth resolution. Thermoacoustic emissions have also been detected from the dose-gradient at the beam edges of a 4 MeV x-ray beam in water. These results establish the feasibility of employing thermoacoustic signals in generating diagnostic images, and in locating x-ray beam edges during radiation therapy. A theoretical model for thermoacoustic imaging using a directional transducer has been developed, which may be used in the design of future thermoacoustic imaging system, and in facilitating comparisons with other types of imaging systems. A method of characterizing biological tissues has been proposed, which relates the power spectrum of the detected thermoacoustic signals to the autocorrelation function of the thermoacoustic source distribution in the tissues. The temperature dependence of acoustic signals induced by microwave pulses in water has been investigated. The signal amplitudes vary with temperature as the thermal expansion of water, except near 4^circ C. The signal waveforms show a gradual phase change as the temperature changes from below 4^ circ to above 4^circ C. This anomaly is due to the presence of a nonthermal component detected near 4^circC, whose waveform is similar to the derivative of the room temperature signal. The results are compared to a model based on a nonequilibrium relaxation mechanism proposed by Pierce and Hsieh. The relaxation time was found to be (0.20 +/- 0.02) ns and (0.13 +/- 0.02) ns for 200 ns and 400 ns microwave pulse widths, respectively. A microwave-induced thermoacoustic source capable of launching large aperture, unipolar ultrasonic plane wave pulses in water has been constructed. This source consists of a thin water layer trapped between two dielectric media. Due to the large mismatch in the dielectric constants, the incident microwaves undergo multiple reflections between the dielectric boundaries trapping the water, resulting in an enhanced specific microwave absorption in the thin water layer. This source may be useful in ultrasonic scattering and attenuation experiments.

Supernova Remnants in the UWIFE and UWISH2 Surveys

NASA Astrophysics Data System (ADS)

Lee, Yong-Hyun

2016-06-01

We have searched for near-infrared [Fe II] (1.644 μm) and H2 1-0 S(1) (2.122 μm) emission features associated with Galactic supernova remnants (SNRs) using the narrow-band imaging surveys UWIFE/ UWISH2 (UKIRT Widefield Infrared Survey for [Fe II] / H2 ). Both surveys cover about 180 square degrees of the first Galactic quadrant (7 {circ} < l < 62 {circ} ; -1.5 {circ} < b < +1.5 {circ} ), and a total of 79 SNRs are falling in the survey area among the currently known 294 Galactic SNRs. The images show diffuse structures as deep as the surface brightness limit of 10^(-19) W m^(-2) arcsec^(-2) which is comparable with a 5σ detection limit of point sources of 18 mag. In order to inspect the narrow-band features, we subtracted H and K-band continuum images obtained from the UKIDSS GPS (UKIRT Infrared Deep Sky Survey of the Galactic Plane) from the [Fe II] and H2 narrow-band images, respectively. By this time, we have found 19 [Fe II]- and 18 H2 -emitting SNRs, and these are likely to increase in future as we inspect the images in more detail. Some of the SNRs show bright, complex, and interesting structures that have never been reported in previous studies. Since [Fe II] and H2 lines trace dense atomic and molecular gases associated with SNR shocks, our results can help us understand the environment and evolution of individual SNRs. Among the SNRs showing both [Fe II] and H2 emission lines, some SNRs show the “[Fe II]-H2 reversal” phenomenon, i.e., the H2 emission features are detected outside the [Fe II] emission boundary. This is opposite to the standard picture: If the shocks are driven by the same blast wave, we expect the H2 filaments to be closer to the explosion center than the [Fe II] filaments. In this presentation, we show several examples of such SNRs detected in our study, and present high resolution (R 40,000) H and K-band spectra of H2 emission features obtained by using IGRINS (Immersion Grating Infrared Spectrograph).

Safety and Efficacy of Cryoballoon Ablation for Paroxysmal Atrial Fibrillation in Japan　- Results From the Japanese Prospective Post-Market Surveillance Study.

PubMed

Okumura, Ken; Matsumoto, Kazuo; Kobayashi, Yoshinori; Nogami, Akihiko; Hokanson, Robert B; Kueffer, Fred

2016-07-25

Outcomes of cryoballoon ablation for paroxysmal atrial fibrillation (PAF) have been reported in the Western countries but not in Japan. The CRYO-Japan PMS study was a single-arm, observational, multicenter, prospective study of the 2nd-generation cryoballoon Arctic Front Advance(TM). We evaluated device- and procedure-related complications and clinical outcomes at 6 months. The 616 patients (male, 72%; mean age, 63±11 years) were enrolled from 33 Japanese hospitals. Of all patients, 610 had PAF, and procedural data were analyzed in 607. A subset of 328 patients was followed for 6 months for the primary efficacy analysis. AF recurrence outside the 3-month blanking period or repeat ablation was considered treatment failure. Pulmonary vein isolation was achieved in 606/607 patients (99.8%); 1 patient (0.3%) had a repeat ablation during the blanking period. Freedom from AF at 6 months was 88.4% (95% CI: 84.1-91.6%). Device- and/or procedure-related adverse events included phrenic nerve injury unresolved at hospital discharge in 9/616 patients (1.5%), which resolved within 6 months in 7, pericardial effusion in 5/616 (0.8%), and tamponade in 4/616 (0.6%). One non-device-related death from pneumonia was reported 6 days post-procedure. Cryoballoon ablation is safe and effective for Japanese PAF patients, with 88.4% AF freedom at 6 months post-ablation. (Circ J 2016; 80: 1744-1749).

Preeclampsia

MedlinePlus

... 2018 Preeclampsia Anne Marie Valente, MD; Katherine E. Economy, MD W omen are at risk for elevations ... 10.1161/CIRCULATIONAHA.113.003858 e344 Valente and Economy  Preeclampsia   e345 Downloaded from http: / / circ. ahajournals. org/ ...

Measurements and Modeling of III-V Solar Cells at High Temperatures up to 400 $${}^{\\circ}$$ C

DOE Office of Scientific and Technical Information (OSTI.GOV)

Perl, Emmett E.; Simon, John; Geisz, John F.

2016-09-01

In this paper, we study the performance of 2.0 eV Al0.12Ga0.39In0.49P and 1.4 eV GaAs solar cells over a temperature range of 25-400 degrees C. The temperature-dependent J01 and J02 dark currents are extracted by fitting current-voltage measurements to a two-diode model. We find that the intrinsic carrier concentration ni dominates the temperature dependence of the dark currents, open-circuit voltage, and cell efficiency. To study the impact of temperature on the photocurrent and bandgap of the solar cells, we measure the quantum efficiency and illuminated current-voltage characteristics of the devices up to 400 degrees C. As the temperature is increased,more » we observe no degradation to the internal quantum efficiency and a decrease in the bandgap. These two factors drive an increase in the short-circuit current density at high temperatures. Finally, we measure the devices at concentrations ranging from ~30 to 1500 suns and observe n = 1 recombination characteristics across the entire temperature range. These findings should be a valuable guide to the design of any system that requires high-temperature solar cell operation.« less

An Analysis of Transiting Hot Jupiters Observed with K2: WASP-55b and WASP-75b

NASA Astrophysics Data System (ADS)

Clark, B. J. M.; Anderson, D. R.; Hellier, C.; Turner, O. D.; Močnik, T.

2018-03-01

We present our analysis of the K2 short-cadence data of two previously known hot Jupiter exoplanets: WASP-55b and WASP-75b. The high precision of the K2 light curves enabled us to search for transit timing and duration variations, rotational modulation, starspots, phase-curve variations and additional transiting planets. We identified stellar variability in the WASP-75 light curve which may be an indication of rotational modulation, with an estimated period of 11.2 ± 1.5 days. We combined this with the spectroscopically measured v\\sin ({i}* ) to calculate a possible line of sight projected inclination angle of {i}* =41^\\circ +/- 16^\\circ . We also perform a global analysis of K2 and previously published data to refine the system parameters.

Effect of annealing and In content on the properties of electron beam evaporated ZnO films

NASA Astrophysics Data System (ADS)

Mohamed, S. H.; Ali, H. M.; Mohamed, H. A.; Salem, A. M.

2005-08-01

The effect of both annealing and In content on the properties of ZnO films prepared by electron beam evaporation were investigated. The evaporation was carried out at room temperature from bulk samples prepared by sintering technique. X-ray diffraction showed that the structure of ZnO-In{2}O{3} films depends on both the In content and annealing temperature. Amorphous, highly transparent and relatively low resistive films which can be suitable for the usage as transparent electrode of organic light-emitting diode were obtained upon annealing at 300 circC. Partially crystalline, highly transparent and highly resistive films which can be used in piezoelectric applications were obtained upon annealing at 500 circC. For each composition the refractive index has no monotonic variation upon increasing annealing temperature.

Uranium beam characterization at CIRCE for background and contamination determinations.

PubMed

De Cesare, M; De Cesare, N; D'Onofrio, A; Fifield, L K; Gialanella, L; Terrasi, F

2015-09-01

The Accelerator Mass Spectrometry (AMS) is the most sensitive technique, compared either to the Inductively Coupled Plasma (ICP-MS) or Thermal Ionization (TI-MS) mass spectrometer, for the actinide (e.g. (236)U, (x)Pu isotopes) measurements. They are present in environmental samples at the ultra trace level since atmospheric tests of Nuclear Weapons (NWs) performed in the past, deliberate dumping of nuclear waste, nuclear fuel reprocessing, on a large scale, and operation of Nuclear Power Plants (NPPs), on a small scale, have led to the release of a wide range of radioactive nuclides in the environment. At the Center for Isotopic Research on Cultural and Environmental heritage (CIRCE) in Caserta, Italy, an upgraded actinide AMS system, based on a 3-MV pelletron tandem accelerator, has been developed and routinely operated. At CIRCE a charge state distribution as a function of terminal voltage, the beam emittance, measured in the 20° actinides dedicated beam line, as well as the energy and position validation of the U ions were performed in order to determine the best measurement conditions. A (236)U/(238)U isotopic ratio background level of about 5×10(-12) or 3×10(-13), depending on the Time of Flight-Energy (TOF-E) configurations, as well as the spatial distribution of the (235)U, (238)U interferences ions and a (236)U contamination mass of about 0.5 fg have been determined. Copyright © 2015 Elsevier Ltd. All rights reserved.

Polarization-dependent electromagnetic responses of ultrathin and highly flexible asymmetric terahertz metasurfaces

NASA Astrophysics Data System (ADS)

Burrow, Joshua A.; Yahiaoui, Riad; Sarangan, Andrew; Agha, Imad; Mathews, Jay; Searles, Thomas A.

2017-12-01

We report the polarization-dependent electromagnetic response from a series of novel terahertz (THz) metasurfaces where asymmetry is introduced through the displacement of two adjacent metallic arms separated by a distance $\\delta$. For all polarization states, the symmetric metasurface exhibits a low quality (Q) factor fundamental dipole mode. By breaking the symmetry, we experimentally observe a secondary dipole-like mode with a Q factor nearly $9\\times$ higher than the fundamental resonance. As $\\delta$ increases, the fundamental dipole mode $f_{1}$ redshifts and the secondary mode $f_{2}$ blueshifts creating a highly transmissive spectral window. Polarization-dependent measurements reveal a full suppression of $f_{2}$ for all asymmetries at $\\theta \\geq 60^\\circ$. Furthermore, at $\\delta \\geq 60 \\text{ }\\mu\\text{m}$, we observe a polarization selective electromagnetic induced transparency (EIT) for the fundamental mode. This work paves the way for applications in filtering, sensing and slow-light devices common to other high Q factor THz metasurfaces with EIT-like response.

Issues in Stratospheric Ozone Depletion.

NASA Astrophysics Data System (ADS)

Lloyd, Steven Andrew

Following the announcement of the discovery of the Antarctic ozone hole in 1985 there have arisen a multitude of questions pertaining to the nature and consequences of polar ozone depletion. This thesis addresses several of these specific questions, using both computer models of chemical kinetics and the Earth's radiation field as well as laboratory kinetic experiments. A coupled chemical kinetic-radiative numerical model was developed to assist in the analysis of in situ field measurements of several radical and neutral species in the polar and mid-latitude lower stratosphere. Modeling was used in the analysis of enhanced polar ClO, mid-latitude diurnal variation of ClO, and simultaneous measurements of OH, HO_2, H_2 O and O_3. Most importantly, such modeling was instrumental in establishing the link between the observed ClO and BrO concentrations in the Antarctic polar vortex and the observed rate of ozone depletion. The principal medical concern of stratospheric ozone depletion is that ozone loss will lead to the enhancement of ground-level UV-B radiation. Global ozone climatology (40^circS to 50^ circN latitude) was incorporated into a radiation field model to calculate the biologically accumulated dosage (BAD) of UV-B radiation, integrated over days, months, and years. The slope of the annual BAD as a function of latitude was found to correspond to epidemiological data for non-melanoma skin cancers for 30^circ -50^circN. Various ozone loss scenarios were investigated. It was found that a small ozone loss in the tropics can provide as much additional biologically effective UV-B as a much larger ozone loss at higher latitudes. Also, for ozone depletions of > 5%, the BAD of UV-B increases exponentially with decreasing ozone levels. An important key player in determining whether polar ozone depletion can propagate into the populated mid-latitudes is chlorine nitrate, ClONO_2 . As yet this molecule is only indirectly accounted for in computer models and field measurements. Therefore a laboratory prototype of an instrument to measure ClONO _2 concentrations in situ was developed, adapting techniques recently developed in this research group to measure ClO concentrations at the part-per-trillion level. The detection scheme involves heating a flowing air sample to almost 500K, thermally dissociating ClONO _2 into ClO and NO_2 , and measuring the resulting ClO concentration by titrating with NO to produce Cl atoms, which are detected by resonance fluoresence. The calibration of this technique is very sensitive to flow parameters (temperature, pressure, flow velocity, added NO concentration, and homogeneity of flow). The issues developed in this thesis contribute to our understanding of the mechanisms of stratospheric ozone depletion and its potential global impact. It is becoming increasingly apparent that our ability to predict the future course of global ozone depletion is critically dependent on our ability to reproduce in situ and remote measurements with numerical models.

2006 Washington State collision data summary : highways only

DOT National Transportation Integrated Search

2007-01-01

This report covers collisions on all State Highways (includes Interstates and State Highways only) in Washington State for the year 2006. : Tables and charts show frequency and rate of collisions, multi-year trends, collision types, contributing circ...

Study of 236U/238U ratio at CIRCE using a 16-strip silicon detector with a TOF system

NASA Astrophysics Data System (ADS)

De Cesare, M.; De Cesare, N.; D'Onofrio, A.; Gialanella, L.; Terrasi, F.

2015-04-01

Accelerator Mass Spectrometry (AMS) is presently the most sensitive technique for the measurement of long-lived actinides, e.g. 236U and xPu isotopes. A new actinide AMS system, based on a 3-MV pelletron tandem accelerator, is operated at the Center for Isotopic Research on Cultural and Environmental Heritage (CIRCE) in Caserta, Italy. In this paper we report on the procedure adopted to increase the 236U abundance sensitivity as low as possible. The energy and position determinations of the 236U ions, using a 16-strip silicon detector have been obtained. A 236U/238U isotopic ratio background level of about 2.9×10-11 was obtained, summing over all the strips, using a Time of Flight-Energy (TOF-E) system with a 16-strip silicon detector (4.9×10-12 just with one strip).

Triple Differential Cross Sections for Ionization of Laser-Aligned Mg Atoms by electron impact

NASA Astrophysics Data System (ADS)

Amami, Sadek; Madison, Don; Nixon, Kate; Murray, Andrew

2013-09-01

3DW (3-body distorted wave) triple differential cross sections have been calculated for electron impact ionization of magnesium atoms aligned by lasers. Calculations have been performed for the kinematics of the experiment performed by Kate Nixon and Andrew Murray at Manchester, England [K. L. Nixon and A. J. Murray 2011 Phys. Rev. Lett. 106, 123201]. An incident projectile was produced with energy of 41.91eV, scattered and ejected electrons were detected with equal energies (E1 =E2 =20eV), the scattered projectile was detected at a fixed angle of 30deg, and the ejected electrons were detected at angles ranging between 0circ; - 180circ; . The theoretical 3DW results will be compared with the experimental data. This work is supported by the US National Science Foundation under Grant.No.PHY-1068237.

Detection of Another Molecular Bubble in the Galactic Center

NASA Astrophysics Data System (ADS)

Tsujimoto, Shiho; Oka, Tomoharu; Takekawa, Shunya; Yamada, Masaya; Tokuyama, Sekito; Iwata, Yuhei; Roll, Justin A.

2018-04-01

The l=-1\\buildrel{\\circ}\\over{.} 2 region in the Galactic center has a high CO J = 3–2/J = 1–0 intensity ratio and extremely broad velocity width. This paper reports the detection of five expanding shells in the l=-1\\buildrel{\\circ}\\over{.} 2 region based on the CO J = 1–0, 13CO J = 1–0, CO J = 3–2, and SiO J = 8–7 line data sets obtained with the Nobeyama Radio Observatory 45 m telescope and James Clerk Maxwell Telescope. The kinetic energy and expansion time of the expanding shells are estimated to be {10}48.3{--50.8} erg and {10}4.7{--5.0} yr, respectively. The origin of these expanding shells is discussed. The total kinetic energy of 1051 erg and the typical expansion time of ∼105 yr correspond to multiple supernova explosions at a rate of 10‑5–10‑4 yr‑1. This indicates that the l=-1\\buildrel{\\circ}\\over{.} 2 region may be a molecular bubble associated with an embedded massive star cluster, although the absence of an infrared counterpart makes this interpretation somewhat controversial. The expansion time of the shells increases as the Galactic longitude decreases, suggesting that the massive star cluster is moving from Galactic west to east with respect to the interacting molecular gas. We propose a model wherein the cluster is moving along the innermost x 1 orbit and the interacting gas collides with it from the Galactic eastern side.

Experimental Investigation of Oblique Wing Aerodynamics at Low Speed

DTIC Science & Technology

2007-03-01

0\\circ’); grid on; title(’\\it C_L vs \\alpha no winglets (50 mph)’,’FontWeight’,’bold’,’FontSize’,11); xlabel(’Angle of Attack (\\alpha)’); ylabel

Surface Structure and Surface Electronic States Related to Plasma Cleaning of Silicon and Germanium

NASA Astrophysics Data System (ADS)

Cho, Jaewon

This thesis discusses the surface structure and the surface electronic states of Si and Ge(100) surfaces as well as the effects of oxidation process on the silicon oxide/Si(100) interface structure. The H-plasma exposure was performed in situ at low temperatures. The active species, produced in the H-plasma by the rf-excitation of H_2 gas, not only remove microcontaminants such as oxygen and carbon from the surface, but also passivate the surface with atomic hydrogen by satisfying the dangling bonds of the surface atoms. The surfaces were characterized by Angle Resolved UV-Photoemission Spectroscopy (ARUPS) and Low Energy Electron Diffraction (LEED). In the case of Si(100), H-plasma exposure produced ordered H-terminated crystallographic structures with either a 2 x 1 or 1 x 1 LEED pattern. The hydride phases, found on the surfaces of the cleaned Si(100), were shown to depend on the temperature of the surface during H-plasma cleaning. The electronic states for the monohydride and dihydride phases were identified by ARUPS. When the plasma cleaned surface was annealed, the phase transition from the dihydride to monohydride was observed. The monohydride Si-H surface bond was stable up to 460^circC, and the dangling bond surface states were identified after annealing at 500^circC which was accompanied by the spectral shift. The H-terminated surface were characterized to have a flat band structure. For the Ge(100) surface, an ordered 2 x 1 monohydride phase was obtained from the surface cleaned at 180 ^circC. After plasma exposure at <=170^circC a 1 x 1 surface was observed, but the ARUPS indicated that the surface was predominantly composed of disordered monohydride structures. After annealing above the H-dissociation temperatures, the shift in the spectrum was shown to occur with the dangling bond surface states. The H-terminated surfaces were identified to be unpinned. The interface structure of silicon oxide/Si(100) was studied using ARUPS. Spectral shifts were observed, which were dependent on the processes of surface preparation and oxidation. The shift was characterized in association with the band bending. The origins of the spectral shifts were discussed, including defects at interface and H-passivation in Si. The interface structure is considered to be dependent on the surface preparation and oxidation process.

46 CFR 160.115-5 - Incorporation by reference.

Code of Federal Regulations, 2012 CFR

2012-10-01

... for §§ 160.115-7, 160.115-13, and 160.115-15. (4) MSC/Circular 980, Standardized Life-saving Appliance Evaluation and Test Report Forms, (February 13, 2001), IBR approved for § 160.115-13 (“IMO MSC Circ. 980...

Electron energy and electron trajectories in an inverse free-electron laser accelerator based on a novel electrostatic wiggler

NASA Astrophysics Data System (ADS)

Nikrah, M.; Jafari, S.

2016-06-01

We expand here a theory of a high-gradient laser-excited electron accelerator based on an inverse free-electron laser (inverse-FEL), but with innovations in the structure and design. The electrostatic wiggler used in our scheme, namely termed the Paul wiggler, is generated by segmented cylindrical electrodes with applied oscillatory voltages {{V}\\text{osc}}(t) over {{90}\\circ} segments. The inverse-FEL interaction can be described by the equations that govern the electron motion in the combined fields of both the laser pulse and Paul wiggler field. A numerical study of electron energy and electron trajectories has been made using the fourth-order Runge-Kutta method. The results indicate that the electron attains a considerable energy at short distances in this device. It is found that if the electron has got sufficient suitable wiggler amplitude intensities, it can not only gain higher energy in longer distances, but also can retain it even after the passing of the laser pulse. In addition, the results reveal that the electron energy gains different peaks for different initial axial velocities, so that a suitable small initial axial velocity of e-beam produces substantially high energy gain. With regard to the transverse confinement of the electron beam in a Paul wiggler, there is no applied axial guide magnetic field in this device.

The Stirling engine as a low cost tool to educate mechanical engineers

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gros, J.; Munoz, M.; Moreno, F.

1995-12-31

The University of Zaragoza through CIRCE, the New Enterprise foundation, an Opel foundation and the local Government of Aragon have been developed a program to introduce the Stirling Engine as a low cost tool to educate students in mechanical engineering. The promotion of a prize like GNAT Power organized by the magazine Model Engineer in London, has improved the practical education of students in the field of mechanical devices and thermal engines. Two editions of the contest, 1993 and 1994, awarded the greatest power Stirling engine made by only using a little candle of paraffin as a heat source. Fourmore » engines were presented in the first edition, with an average power of about 100 mW, and seven engines in the second one, achieving a power of about 230 mW. Presentations in Technical Schools and the University have been carried out. Also low cost tools have been made for measuring an electronic device to draw the real internal pressure volume diagram using a PC. A very didactic software to design classic kinematic alpha, beta and gamma engines plus Ringbom beta and gamma engines has been created. A book is going to be published (in Spanish) explaining the design of small Stirling engines as a way to start with low cost research in thermal engines, a very difficult target with IC engines.« less

Computing the Polarimetric and Photometric Variability of Be Stars

NASA Astrophysics Data System (ADS)

Marr, K. C.; Jones, C. E.; Halonen, R. J.

2018-01-01

We investigate variations in the linear polarization as well as in the V-band and B-band color–magnitudes for classical Be star disks. We present two models: disks with enhanced disk density and disks that are tilted or warped from the stellar equatorial plane. In both cases, we predict variation in observable properties of the system as the disk rotates. We use a non-LTE radiative transfer code BEDISK (Sigut & Jones) in combination with a Monte Carlo routine that includes multiple scattering (Halonen et al.) to model classical Be star systems. We find that a disk with an enhanced density region that is one order of magnitude denser than the disk’s base density shows as much as ∼ 0.2 % variability in the polarization while the polarization position angle varies by ∼ 8^\\circ . The ΔV magnitude for the same system shows variations of up to ∼ 0.4 mag while the Δ(B–V) color varies by at most ∼ 0.01 mag. We find that disks tilted from the equatorial plane at small angles of ∼ 30^\\circ more strongly reflect the values of polarization and color–magnitudes reported in the literature than disks tilted at larger angles. For this model, the linear polarization varies by ∼ 0.3 % , the polarization position angle varies by ∼ 60^\\circ , the ΔV magnitude varies up to 0.35 mag, and the Δ(B–V) color varies by up to 0.1 mag. We find that the enhanced disk density models show ranges of polarization and color–magnitudes that are commensurate with what is reported in the literature for all sizes of the density-enhanced regions. From this, we cannot determine any preference for small or large density-enhanced regions.

Solar Cycle Variability Induced by Tilt Angle Scatter in a Babcock-Leighton Solar Dynamo Model

NASA Astrophysics Data System (ADS)

Karak, Bidya Binay; Miesch, Mark

2017-09-01

We present results from a three-dimensional Babcock-Leighton (BL) dynamo model that is sustained by the emergence and dispersal of bipolar magnetic regions (BMRs). On average, each BMR has a systematic tilt given by Joy’s law. Randomness and nonlinearity in the BMR emergence of our model produce variable magnetic cycles. However, when we allow for a random scatter in the tilt angle to mimic the observed departures from Joy’s law, we find more variability in the magnetic cycles. We find that the observed standard deviation in Joy’s law of {σ }δ =15^\\circ produces a variability comparable to the observed solar cycle variability of ˜32%, as quantified by the sunspot number maxima between 1755 and 2008. We also find that tilt angle scatter can promote grand minima and grand maxima. The time spent in grand minima for {σ }δ =15^\\circ is somewhat less than that inferred for the Sun from cosmogenic isotopes (about 9% compared to 17%). However, when we double the tilt scatter to {σ }δ =30^\\circ , the simulation statistics are comparable to the Sun (˜18% of the time in grand minima and ˜10% in grand maxima). Though the BL mechanism is the only source of poloidal field, we find that our simulations always maintain magnetic cycles even at large fluctuations in the tilt angle. We also demonstrate that tilt quenching is a viable and efficient mechanism for dynamo saturation; a suppression of the tilt by only 1°-2° is sufficient to limit the dynamo growth. Thus, any potential observational signatures of tilt quenching in the Sun may be subtle.

Metformin-Induced Changes of the Coding Transcriptome and Non-Coding RNAs in the Livers of Non-Alcoholic Fatty Liver Disease Mice.

PubMed

Guo, Jun; Zhou, Yuan; Cheng, Yafen; Fang, Weiwei; Hu, Gang; Wei, Jie; Lin, Yajun; Man, Yong; Guo, Lixin; Sun, Mingxiao; Cui, Qinghua; Li, Jian

2018-01-01

Recent studies have suggested that changes in non-coding mRNA play a key role in the progression of non-alcoholic fatty liver disease (NAFLD). Metformin is now recommended and effective for the treatment of NAFLD. We hope the current analyses of the non-coding mRNA transcriptome will provide a better presentation of the potential roles of mRNAs and long non-coding RNAs (lncRNAs) that underlie NAFLD and metformin intervention. The present study mainly analysed changes in the coding transcriptome and non-coding RNAs after the application of a five-week metformin intervention. Liver samples from three groups of mice were harvested for transcriptome profiling, which covered mRNA, lncRNA, microRNA (miRNA) and circular RNA (circRNA), using a microarray technique. A systematic alleviation of high-fat diet (HFD)-induced transcriptome alterations by metformin was observed. The metformin treatment largely reversed the correlations with diabetes-related pathways. Our analysis also suggested interaction networks between differentially expressed lncRNAs and known hepatic disease genes and interactions between circRNA and their disease-related miRNA partners. Eight HFD-responsive lncRNAs and three metformin-responsive lncRNAs were noted due to their widespread associations with disease genes. Moreover, seven miRNAs that interacted with multiple differentially expressed circRNAs were highlighted because they were likely to be associated with metabolic or liver diseases. The present study identified novel changes in the coding transcriptome and non-coding RNAs in the livers of NAFLD mice after metformin treatment that might shed light on the underlying mechanism by which metformin impedes the progression of NAFLD. © 2018 The Author(s). Published by S. Karger AG, Basel.

The Thermoluminescent Response of Several Phosphors to Monoenergetic Photon Beams with Energies from 275 TO 2,550 EV.

NASA Astrophysics Data System (ADS)

Carrillo Beltran, Ricardo Enrique

The thermoluminescent (TL) response of LiF:Mg,Ti (TLD-100) and CaF_2:Dy (TLD-200) to monoenergetic photon beams was measured for photons with energies between 275 and 2,550 eV produced by the Aladdin synchrotron accelerator of the UW-Madison. The change of the TL response, as measured by the 130-215 ^circC integrated light output for TLD-100, the 170-250^circC TL interval for TLD-200 and the height of the main dosimetric peak at 200^circC for both phosphors as a function of total energy deposited up to saturation is described. Glow curves were determined for TLDs annealed in helium and irradiated at various photon energies. Glow curves showing the adverse effect of air annealing upon the TL sensitivity of these phosphors are presented as well. Supralinearity factors for each TLD type were calculated using the integrated TL and the main peak height and are listed for the photon energy beams employed. High surface doses were achieved with these irradiations because of the short mean free path of the photons and the even shorter range of the freed electrons, both plotted. Despite the shallower penetration of the photons in TLD-200 as compared to TLD-100, the former phosphor was found to be more suitable for routine use as a synchrotron radiation monitor because its TL properties change very little with photon energy as shown by its constant glow curve obtained. TLD-100 glow curve, either from a chip or a crystal, changed according to the photon energy employed; this adverse effect was more pronounced with the chips.

Numerical implementation of magneto-acousto-electrical tomography (MAET) using a linear phased array transducer

NASA Astrophysics Data System (ADS)

Soner Gözü, Mehmet; Zengin, Reyhan; Güneri Gençer, Nevzat

2018-02-01

In this study, the performance and implementation of magneto-acousto-electrical tomography (MAET) is investigated using a linear phased array (LPA) transducer. The goal of MAET is to image the conductivity distribution in biological bodies. It uses the interaction between ultrasound and a static magnetic field to generate velocity current density distribution inside the body. The resultant voltage due to velocity current density is sensed by surface electrodes attached on the body. In this study, the theory of MAET is reviewed. A 16-element LPA transducer with 1 MHz excitation frequency is used to provide beam directivity and steerability of acoustic waves. Different two-dimensional numerical models of breast and tumour are formed to analyze the multiphysics problem coupled with acoustics and electromagnetic fields. In these models, velocity current density distributions are obtained for pulse type ultrasound excitations. The static magnetic field is assumed as 1 T. To sense the resultant voltage caused by the velocity current density, it is assumed that two electrodes are attached on the surface of the body. The performance of MAET is shown through sensitivity matrix analysis. The sensitivity matrix is obtained for two transducer positions with 13 steering angles between -30\\circ to 30\\circ with 5\\circ angular intervals. For the reconstruction of the images, truncated singular value decomposition method is used with different signal-to-noise ratio (SNR) values (20 dB, 40 dB, 60 dB and 80 dB). The resultant images show that the perturbation (5 mm  ×  5 mm) placed 35 mm depth can be detected even if the SNR is 20 dB.

Pre-test analysis of protected loss of primary pump transients in CIRCE-HERO facility

NASA Astrophysics Data System (ADS)

Narcisi, V.; Giannetti, F.; Del Nevo, A.; Tarantino, M.; Caruso, G.

2017-11-01

In the frame of LEADER project (Lead-cooled European Advanced Demonstration Reactor), a new configuration of the steam generator for ALFRED (Advanced Lead Fast Reactor European Demonstrator) was proposed. The new concept is a super-heated steam generator, double wall bayonet tube type with leakage monitoring [1]. In order to support the new steam generator concept, in the framework of Horizon 2020 SESAME project (thermal hydraulics Simulations and Experiments for the Safety Assessment of MEtal cooled reactors), the ENEA CIRCE pool facility will be refurbished to host the HERO (Heavy liquid mEtal pRessurized water cOoled tubes) test section to investigate a bundle of seven full scale bayonet tubes in ALFRED-like thermal hydraulics conditions. The aim of this work is to verify thermo-fluid dynamic performance of HERO during the transition from nominal to natural circulation condition. The simulations have been performed with RELAP5-3D© by using the validated geometrical model of the previous CIRCE-ICE test section [2], in which the preceding heat exchanger has been replaced by the new bayonet bundle model. Several calculations have been carried out to identify thermal hydraulics performance in different steady state conditions. The previous calculations represent the starting points of transient tests aimed at investigating the operation in natural circulation. The transient tests consist of the protected loss of primary pump, obtained by reducing feed-water mass flow to simulate the activation of DHR (Decay Heat Removal) system, and of the loss of DHR function in hot conditions, where feed-water mass flow rate is absent. According to simulations, in nominal conditions, HERO bayonet bundle offers excellent thermal hydraulic behavior and, moreover, it allows the operation in natural circulation.

Tudor-staphylococcal nuclease regulates the expression and biological function of alkylglycerone phosphate synthase via nuclear factor-κB and microRNA-127 in human glioma U87MG cells.

PubMed

Zhang, Yongqiang; Jia, Jun; Li, Ying; Chen, Yan-Ge; Huang, Huan; Qiao, Yang; Zhu, Yu

2018-06-01

Glioma is one of the malignant tumor types detrimental to human health; therefore, it is important to find novel targets and therapeutics for this tumor. The downregulated expression of Tudor-staphylococcal nuclease (SN) and alkylglycerone phosphate synthase (AGPS) can decrease cancer malignancy, and the overexpression of them can the increase viability and migration potential of various tumor cell types; however, the role of AGPS in the proliferation and migration of glioma, and the association of Tudor-SN and AGPS in human glioma is not clear. In the present study, it was determined that AGPS silencing suppressed the proliferation and migration potential of glioma U87MG cells, and suppressed the expression of the circular RNAs circ-ubiquitin-associated protein 2, circ-zinc finger protein 292 and circ-homeodomain-interacting protein kinase 3, and the long non-coding RNAs H19 imprinted maternally expressed transcript (non-protein coding), colon cancer-associated transcript 1 (non-protein coding) and hepatocellular carcinoma upregulated long non-coding RNA. Furthermore, Tudor-SN silencing suppressed the expression of AGPS; however, nuclear factor (NF)-κB and microRNA (miR)-127 retrieval experiments partially reduced the expression of AGPS. Additionally, it was determined that Tudor-SN silencing suppressed the activity of the mechanistic target of rapamycin (mTOR) signaling pathway, and NF-κB and miR-127 retrieval experiments partially reduced the activity of mTOR. Therefore, it was considered that NF-κB and miR-127 may be the mediators of Tudor-SN-regulated AGPS via the mTOR signaling pathway. These results improve on our knowledge of the mechanisms underlying Tudor-SN and AGPS in human glioma.

The Landscape of MicroRNA, Piwi-Interacting RNA, and Circular RNA in Human Saliva

PubMed Central

Bahn, Jae Hoon; Zhang, Qing; Li, Feng; Chan, Tak-Ming; Lin, Xianzhi; Kim, Yong; Wong, David T.W.; Xiao, Xinshu

2015-01-01

BACKGROUND Extracellular RNAs (exRNAs) in human body fluids are emerging as effective biomarkers for detection of diseases. Saliva, as the most accessible and noninvasive body fluid, has been shown to harbor exRNA biomarkers for several human diseases. However, the entire spectrum of exRNA from saliva has not been fully characterized. METHODS Using high-throughput RNA sequencing (RNA-Seq), we conducted an in-depth bioinformatic analysis of noncoding RNAs (ncRNAs) in human cell-free saliva (CFS) from healthy individuals, with a focus on microRNAs (miRNAs), piwi-interacting RNAs (piRNAs), and circular RNAs (circRNAs). RESULTS Our data demonstrated robust reproducibility of miRNA and piRNA profiles across individuals. Furthermore, individual variability of these salivary RNA species was highly similar to those in other body fluids or cellular samples, despite the direct exposure of saliva to environmental impacts. By comparative analysis of >90 RNA-Seq data sets of different origins, we observed that piRNAs were surprisingly abundant in CFS compared with other body fluid or intracellular samples, with expression levels in CFS comparable to those found in embryonic stem cells and skin cells. Conversely, miRNA expression profiles in CFS were highly similar to those in serum and cerebrospinal fluid. Using a customized bioinformatics method, we identified >400 circRNAs in CFS. These data represent the first global characterization and experimental validation of circRNAs in any type of extracellular body fluid. CONCLUSIONS Our study provides a comprehensive landscape of ncRNA species in human saliva that will facilitate further biomarker discoveries and lay a foundation for future studies related to ncRNAs in human saliva. PMID:25376581

D/H Toward BD+28 4211: First FUSE Results

NASA Technical Reports Server (NTRS)

Sonneborne, George; Andre, M.; Oliveira, C.; Friedman, S. D.; Howk, J. C.; Kruk, J. W.; Moos, H. W.; Oegerle, W. R.; Sembach, K. R.; Chayer, P.;

Mass and abundance 236U sensitivities at CIRCE

NASA Astrophysics Data System (ADS)

De Cesare, M.; De Cesare, N.; D'Onofrio, A.; Fifield, L. K.; Gialanella, L.; Terrasi, F.

2015-10-01

The actinides (e.g. 236U and xPu isotopes) are present in environmental samples at the ultra trace level since atmospheric tests of NWs (Nuclear Weapons) performed in the past, deliberate dumping of nuclear waste, nuclear fuel reprocessing, on a large scale and operation of NPPs (Nuclear Power Plants) on a small scale have led to the release of a wide range of radioactive nuclides in the environment. Their detection requires the most sensitive AMS (Accelerator Mass Spectrometry) techniques and at the Center for Isotopic Research on Cultural and Environmental heritage (CIRCE) in Caserta, Italy, an upgraded actinide AMS system, based on a 3-MV pelletron tandem accelerator, has been operated. In this paper the progress made in order to push the 236U mass sensitivity and 236U/238U isotopic ratio down to the natural levels is reported. A uranium contamination mass of about 0.05 μg and a 236U/238U isotopic ratio sensitivities at the level of 3.2 × 10-13 are presently achievable.

Ultra-High Precision Half-Life Measurement for the Superallowed &+circ; Emitter ^26Al^m

NASA Astrophysics Data System (ADS)

Finlay, P.; Demand, G.; Garrett, P. E.; Leach, K. G.; Phillips, A. A.; Sumithrarachchi, C. S.; Svensson, C. E.; Triambak, S.; Grinyer, G. F.; Leslie, J. R.; Andreoiu, C.; Cross, D.; Austin, R. A. E.; Ball, G. C.; Bandyopadhyay, D.; Djongolov, M.; Ettenauer, S.; Hackman, G.; Pearson, C. J.; Williams, S. J.

2009-10-01

The calculated nuclear structure dependent correction for ^26Al^m (δC-δNS= 0.305(27)% [1]) is smaller by nearly a factor of two than the other twelve precision superallowed cases, making it an ideal case to pursue a reduction in the experimental errors contributing to the Ft value. An ultra-high precision half-life measurement for the superallowed &+circ; emitter ^26Al^m has been made at the Isotope Separator and Accelerator (ISAC) facility at TRIUMF in Vancouver, Canada. A beam of ˜10^5 ^26Al^m/s was delivered in October 2007 and its decay was observed using a 4π continuous gas flow proportional counter as part of an ongoing experimental program in superallowed Fermi β decay studies. With a statistical precision of ˜0.008%, the present work represents the single most precise measurement of any superallowed half-life to date. [4pt] [1] I.S. Towner and J.C. Hardy, Phys. Rev. C 79, 055502 (2009).

Ultra-High Precision Half-Life Measurement for the Superallowed &+circ; Emitter ^26Al^m

NASA Astrophysics Data System (ADS)

Finlay, P.; Demand, G.; Garrett, P. E.; Leach, K. G.; Phillips, A. A.; Sumithrarachchi, C. S.; Svensson, C. E.; Triambak, S.; Ball, G. C.; Bandyopadhyay, D.; Djongolov, M.; Ettenauer, S.; Hackman, G.; Pearson, C. J.; Williams, S. J.; Andreoiu, C.; Cross, D.; Austin, R. A. E.; Grinyer, G. F.; Leslie, J. R.

2008-10-01

The calculated nuclear structure dependent correction for ^26Al^m (δC-δNS= 0.305(27)% [1]) is smaller by nearly a factor of two than the other twelve precision superallowed cases, making it an ideal case to pursue a reduction in the experimental errors contributing to the Ft value. An ultra-high precision half-life measurement for the superallowed &+circ; emitter ^26Al^m has been made using a 4π continuous gas flow proportional counter as part of an ongoing experimental program in superallowed Fermi β decay studies at the Isotope Separator and Accelerator (ISAC) facility at TRIUMF in Vancouver, Canada, which delivered a beam of ˜10^5 ^26Al^m/s in October 2007. With a statistical precision of ˜0.008%, the present work represents the single most precise measurement of any superallowed half-life to date. [1] I.S. Towner and J.C. Hardy, Phys. Rev. C 77, 025501 (2008).

Substitutional Cd and Cd-Oxygen Vacancy Complexes in ZrO2 and Ce-doped ZrO_2

NASA Astrophysics Data System (ADS)

Zacate, Matthew O.; Karapetrova, E.; Platzer, R.; Gardner, J. A.; Evenson, W. E.; Sommers, J. A.

1996-03-01

We are using Perturbed Angular Correlation Spectroscopy (PAC) to study oxygen vacancy (V_O) dynamics in tetragonal ZrO2 and Ce-doped ZrO_2. PAC requires a radioactive probe atom, Cd in this study, which sits substitutionally for a Zr ion. Cd is doubly-negatively charged relative to the lattice and attracts doubly-positively charged V_Os. Pure tetragonal zirconia exists only above 950 ^circC and in this temperature range, the V_Os are very mobile. Above 950 ^circC we observe V_Os rapidly hopping about the Cd allowing us to determine the VO concentration and the trapping energy. We have been Ce-doping to stabilize the tetragonal phase to lower temperature to determine the electric field gradient the Cd experiences due to a stationary V_O. As a consequence of the Ce-doping, we observe a local lattice distortion about the Cd which increases with Ce-doping.

HD 202206: A Circumbinary Brown Dwarf System

NASA Astrophysics Data System (ADS)

Benedict, G. Fritz; Harrison, Thomas E.

2017-06-01

Using Hubble Space Telescope Fine Guidance Sensor astrometry and previously published radial velocity measures, we explore the exoplanetary system HD 202206. Our modeling results in a parallax, {π }{abs}=21.96+/- 0.12 milliseconds of arc, a mass for HD 202206 B of {{ M }}B={0.089}-0.006+0.007 {{ M }}⊙ , and a mass for HD 202206 c of {{ M }}c={17.9}-1.8+2.9 {{ M }}{Jup}. HD 202206 is a nearly face-on G + M binary orbited by a brown dwarf. The system architecture that we determine supports past assertions that stability requires a 5:1 mean motion resonance (we find a period ratio, {P}c/{P}B=4.92+/- 0.04) and coplanarity (we find a mutual inclination, {{Φ }}=6^\\circ +/- 2^\\circ ). Based on observations made with the NASA/ESA Hubble Space Telescope, obtained at the Space Telescope Science Institute, which is operated by the Association of Universities for Research in Astronomy, Inc., under NASA contract NAS5-26555.

Characterization of the behavior under impact loading of a maraging steel strengthened by nano-precipitates

NASA Astrophysics Data System (ADS)

Lach, E.; Redjaïmia, A.; Leitner, H.; Clemens, H.

2006-08-01

Nanometer-sized precipitates are responsible for the high strength of steel alloys well known as maraging steels. The term maraging relates to aging reactions in very low-carbon martensitic steels. Due to precipitation hardening 0.2% yield stress values of up to 2.4 GPa can be achieved. The class of stainless maraging steels exhibits an excellent combination of very high strength and hardness, ductility and toughness, combined with good corrosion resistance. In many applications like crash worthiness or ballistic protection the materials are loaded at high strain-rates. The most important characteristic of material behavior under dynamic load is the dynamic yield stress. In this work compression tests had been conducted at strain-rates in the order of 5 x 10 - 3 s - 1 up to 3 x 103 s - 1 to study the materials behaviour. Additionally high dynamic compression tests had been performed in the temperature range from -40circC up to 300circC.

PRAPI: post-transcriptional regulation analysis pipeline for Iso-Seq.

PubMed

Gao, Yubang; Wang, Huiyuan; Zhang, Hangxiao; Wang, Yongsheng; Chen, Jinfeng; Gu, Lianfeng

2018-05-01

The single-molecule real-time (SMRT) isoform sequencing (Iso-Seq) based on Pacific Bioscience (PacBio) platform has received increasing attention for its ability to explore full-length isoforms. Thus, comprehensive tools for Iso-Seq bioinformatics analysis are extremely useful. Here, we present a one-stop solution for Iso-Seq analysis, called PRAPI to analyze alternative transcription initiation (ATI), alternative splicing (AS), alternative cleavage and polyadenylation (APA), natural antisense transcripts (NAT), and circular RNAs (circRNAs) comprehensively. PRAPI is capable of combining Iso-Seq full-length isoforms with short read data, such as RNA-Seq or polyadenylation site sequencing (PAS-seq) for differential expression analysis of NAT, AS, APA and circRNAs. Furthermore, PRAPI can annotate new genes and correct mis-annotated genes when gene annotation is available. Finally, PRAPI generates high-quality vector graphics to visualize and highlight the Iso-Seq results. The Dockerfile of PRAPI is available at http://www.bioinfor.org/tool/PRAPI. lfgu@fafu.edu.cn.

A low noise interface circuit design of micro-machined gyroscope

NASA Astrophysics Data System (ADS)

Fu, Qiang; Di, Xipeng; Yin, Liang; Liu, Xiaowei

2017-07-01

The analyses of MEMS gyroscope interface circuit on thermal noise, 1/f noise and phase noise are made in this paper. A closed-loop differential driving circuit and a low-noise differential detecting circuit based on the high frequency modulation are designed to limit the noise. The interface chip is implemented in a standard 0.5 μm CMOS process. The test results show that the resolution of sensitive capacity can reach to 6.47 × 10-20 F at the bandwidth of 60 Hz. The measuring range is ± 200°/s and the nonlinearity is 310 ppm. The output noise density is 5.8^\\circ/({{h}}\\cdot \\sqrt{{Hz}}). The angular random walk (allen-variance) is 0.092^\\circ/\\sqrt{{{h}}} and the bias instability is 2.63°/h. Project supported by the National Natural Science Foundation of China (No. 61204121), the National Hi-Tech Research and Development Program of China (No. 2013AA041107), and the Fundamental Research Funds for the Central Universities (No. HIT.NSRIF.2013040).

Contact angle change during evaporation of near-critical liquids

NASA Astrophysics Data System (ADS)

Nikolayev, Vadim; Hegseth, John; Beysens, Daniel

1998-03-01

An unexpected change of the dynamic contact angle was recently observed in a near-critical liquid-gas system in a space experiment. While the near-critical liquid completely wets a solid under equilibrium conditions, the apparent contact angle changed from 0^circ to about 120^circ during evaporation. We propose an explanation for this phenomenon by taking into account vapor recoil due to evaporation (motion of the vapor from the free liquid surface). This force is normal to the vapor-liquid interface and is directed towards the liquid. It increases sharply near the triple contact line. Near the critical point, where the surface tension force is very weak, the vapor recoil force can be important enough to change the apparent contact angle. A similar effect can also explain the drying of a heater during boiling at high heat flux. The drying greatly reduces the heat transfer to the liquid causing the heater to melt. This phenomenon is called ``boiling crisis", ``burnout" or ``Departure from Nuclear Boiling".

C60H_2: Synthesis of the Simplest C60 Hydrocarbon Derivative

NASA Astrophysics Data System (ADS)

Henderson, Craig C.; Cahill, Paul A.

1993-03-01

The reaction of C60 with BH_3:tetrahydrofuran in toluene followed by hydrolysis yielded C60H_2. This product was separated by high-performance liquid chromatography and characterized as the addition product of H_2 to a 6,6-ring fusion (1a1b isomer). The ^1H nuclear magnetic resonance (NMR) spectrum of the product remained a sharp singlet between -80^circ and +100^circC, which suggests a static structure on the NMR time scale. Hydrolysis of the proposed borane addition product with acetic acid-d_1 or D_2O yielded C60HD, and its ^3JHD coupling constant is consistent with vicinal addition. The observation of a single C60H_2 isomer is in complete agreement with earlier calculations that indicated that at most 2 of the 23 possible isomers of C60 would be observable at equilibrium at room temperature. These results suggest that organoborane chemistry may be applied to further functionalization of fullerenes.

Dynamic ASXL1 Exon Skipping and Alternative Circular Splicing in Single Human Cells

PubMed Central

Natarajan, Sivaraman; Carter, Robert; Brown, Patrick O.

2016-01-01

Circular RNAs comprise a poorly understood new class of noncoding RNA. In this study, we used a combination of targeted deletion, high-resolution splicing detection, and single-cell sequencing to deeply probe ASXL1 circular splicing. We found that efficient circular splicing required the canonical transcriptional start site and inverted AluSx elements. Sequencing-based interrogation of isoforms after ASXL1 overexpression identified promiscuous linear splicing between all exons, with the two most abundant non-canonical linear products skipping the exons that produced the circular isoforms. Single-cell sequencing revealed a strong preference for either the linear or circular ASXL1 isoforms in each cell, and found the predominant exon skipping product is frequently co-expressed with its reciprocal circular isoform. Finally, absolute quantification of ASXL1 isoforms confirmed our findings and suggests that standard methods overestimate circRNA abundance. Taken together, these data reveal a dynamic new view of circRNA genesis, providing additional framework for studying their roles in cellular biology. PMID:27736885

High-temperature long-lasting stability assessment of a single-crystal diamond detector under high-flux neutron irradiation

NASA Astrophysics Data System (ADS)

Pilotti, R.; Angelone, M.; Marinelli, M.; Milani, E.; Verona-Rinati, G.; Verona, C.; Prestopino, G.; Montereali, R. M.; Vincenti, M. A.; Schooneveld, E. M.; Scherillo, A.; Pietropaolo, A.

2016-11-01

An innovative diamond detector layout is presented that is designed to operate at high temperature under intense neutron and gamma fluxes. It is made of a 500 μm “electronic grade” diamond film with 100 nm thick Ag metal contacts deposited onto each surface of the film by means of thermal evaporation. A 2 μ \\text{m} thick layer of 6LiF has been deposited on top of one of the two Ag contacts to make the detector sensitive to thermal neutrons. The device was tested at the ISIS spallation neutron source (Rutherford Appleton Laboratory, UK) using the INES beam line. The detector was continuously irradiated for 100 hours in vacuum (p = 10-5 \\text{mbar}) , exposed to a neutron flux of about 106 n cm-2 s-1 at a temperature T =150 ^\\circ \\text{C} . The aim of this experiment was to study the time dependence of the diamond detector performance while operating at high temperature under irradiation, providing a first experimental proof of reliable continuous operation for 100 hours at high temperature in a harsh environment.

Seasonal Freshwater and Salinity Budgets in the Tropical Atlantic Ocean

NASA Astrophysics Data System (ADS)

Yoo, Jung Moon

Seasonal freshwater and salt budgets in the tropical Atlantic are examined by incorporating precipitation, estimated from 11 years of outgoing longwave radiation (OLR) data. A spatially dependent formula is developed to estimate rainfall from the OLR data and the height of the base of the trade -wind inversion. This formula has been constructed by comparing rainfall records from twelve islands with the OLR data. Zonal asymmetries due to the differing cloud types in the eastern and western Atlantic and the presence of Saharan sand in the east are included. Significant inconsistencies between results of the present study the seasonal rainfall estimates of Dorman and Bourke (1981) are found. Annual and interannual variations of the moisture and freshwater budgets are examined in the same region. The seasonal moisture budget (E-P) is calculated from the above rainfall and evaporation estimated from surface data. Consistent with previous estimates, we find annual mean deficit of freshwater. The interannual variability of freshwater flux during the period 1974 to 1979 is examined. Seasonal or interannua1 variations of rainfall account for two-thirds of the variations of the freshwater flux. We examine the seasonal freshwater and salt budgets, and obtain their meridional transports by southward integration of their divergence fields. The annual freshwater transport in the tropical Atlantic is northward, ranging from 0 Sv near the equator to 0.3 Sv at 12^circ N and 20^circS. The seasonal meridional transport amounts of freshwater from surface to 500 m depth in the tropical Atlantic Ocean range from 1.35 Sv to -0.45 Sv. The strong northward freshwater transports prevail for the period summer to fall. This seasonal cycle is caused by the shifts of the ITCZ as well as the changes in the local freshwater storage. Annual and seasonal salt budgets are calculated from objectively analyzed historical (1900-1986) salinity observations. The annual salt flux in the tropical Atlantic is zero, showing that the salt flux by horizontal advection balances the flux by horizontal diffusion. The salt flux due to the diffusion is northward, and has a maximum of 5 times 10^6kg/s at 15^circN. Seasonal transport amounts of salt range from 30 times 10^6 kg/s to -35 times 10^6kg/s. The direction of the seasonal salt transports in the tropical Atlantic is northward except for the period summer to fall. We find an interannual variability of salinity along the coast of South America in the western Atlantic.

The Oceanic Cycle and Global Atmospheric Budget of Carbonyl Sulfide.

NASA Astrophysics Data System (ADS)

Weiss, Peter Scott

1995-01-01

A significant portion of stratospheric air chemistry is influenced by the existence of carbonyl sulfide (COS). This ubiquitous sulfur gas represents a major source of sulfur to the stratosphere where it is converted to sulfuric acid aerosol particles. Stratospheric aerosols are climatically important because they scatter incoming solar radiation back to space and are able to increase the catalytic destruction of ozone through gas phase reactions on particle surfaces. COS is primarily formed at the surface of the earth, in both marine and terrestrial environments, and is strongly linked to natural biological processes. However, many gaps in the understanding of the global COS cycle still exist, which has led to a global atmospheric budget that is out of balance by a factor of two or more, and a lack of understanding of how human activity has affected the cycling of this gas. The goal of this study was to focus on COS in the marine environment by investigating production/destruction mechanisms and recalculating the ocean-atmosphere flux. Analytical work was carried out using the electron capture sulfur detector (ECD-S) for gas chromatography. This system was optimized for COS so that air and seawater-equilibrated air samples could be directly injected without preconcentration. This research was carried out on two cruises aboard the NOAA ship Surveyor during long meridional transects between 55^circN and 70 ^circS along 140^circ W in the Pacific Ocean. The major findings of these research activities are: (1) Photoproduction of COS is at a maximum between 313 and 336 nm in natural sunlit waters. Tropical water surface and column production rates are 68 pM/day and 360 nmol/m^2/day, respectively. Antarctic surface and column production rates are 101 pM/day and 620 nmol/m^2/day, respectively. (2) Wide regions of the open ocean were found to be undersaturated with respect to atmospheric equilibrium of COS. The global open ocean sea-air flux of COS was found to be -0.032 (-0.010 to -0.054) which represents a very weak sink of atmospheric COS. (3) Daily COS concentration losses in surface waters were used to determine seawater lifetimes, which agreed to hydrolysis lifetimes to within 15%. (4) Atmospheric COS mixing ratios displayed <5% interhemispheric ratio. However, seasonal variation in the northern hemisphere may have been as high as 10%. (5) A simple steady-state model was developed to predict seasonal cycles of atmospheric COS.

Multiplate Radiation Shields: Investigating Radiational Heating Errors

NASA Astrophysics Data System (ADS)

Richardson, Scott James

1995-01-01

Multiplate radiation shield errors are examined using the following techniques: (1) analytic heat transfer analysis, (2) optical ray tracing, (3) numerical fluid flow modeling, (4) laboratory testing, (5) wind tunnel testing, and (6) field testing. Guidelines for reducing radiational heating errors are given that are based on knowledge of the temperature sensor to be used, with the shield being chosen to match the sensor design. Small, reflective sensors that are exposed directly to the air stream (not inside a filter as is the case for many temperature and relative humidity probes) should be housed in a shield that provides ample mechanical and rain protection while impeding the air flow as little as possible; protection from radiation sources is of secondary importance. If a sensor does not meet the above criteria (i.e., is large or absorbing), then a standard Gill shield performs reasonably well. A new class of shields, called part-time aspirated multiplate radiation shields, are introduced. This type of shield consists of a multiplate design usually operated in a passive manner but equipped with a fan-forced aspiration capability to be used when necessary (e.g., low wind speed). The fans used here are 12 V DC that can be operated with a small dedicated solar panel. This feature allows the fan to operate when global solar radiation is high, which is when the largest radiational heating errors usually occur. A prototype shield was constructed and field tested and an example is given in which radiational heating errors were reduced from 2 ^circC to 1.2 ^circC. The fan was run continuously to investigate night-time low wind speed errors and the prototype shield reduced errors from 1.6 ^ circC to 0.3 ^circC. Part-time aspirated shields are an inexpensive alternative to fully aspirated shields and represent a good compromise between cost, power consumption, reliability (because they should be no worse than a standard multiplate shield if the fan fails), and accuracy. In addition, it is possible to modify existing passive shields to incorporate part-time aspiration, thus making them even more cost-effective. Finally, a new shield is described that incorporates a large diameter top plate that is designed to shade the lower portion of the shield. This shield increases flow through it by 60%, compared to the Gill design and it is likely to reduce radiational heating errors, although it has not been tested.

Monolithic Pellets, Composites and Thick Films of Hydroxyapatite: Correlation of Mechanical Properties with Microstructure.

NASA Astrophysics Data System (ADS)

Wang, Pauchiu Either

Hydroxyapatite Ca_{10}(PO _4)_6(OH)_2 (abbreviated as HA) has great biocompatibility. Poor mechanical properties of HA implants and decomposition of HA during processing are the major obstacles for widespread uses of HA. In the present thesis we have attempted to understand the sintering behavior of monolithic HA and metal-reinforced HA-matrix composites, and the mechanism of formation of HA coating in the solutions at the normal temperature. The powders of two calcium phosphates, namely hydroxyapatite and dicalcium phosphate (DCP: chemical formula Ca_2P_2O_7), were sintered at various temperatures and in various environments. The density, flexural strength and knoop hardness of both phosphates sintered in air for 4 h initially increased with the sintering temperature, reaching maxima at around 1000-1150 ^circC, and then decreased due to decomposition. To reduce dehydroxylation, HA powder was sintered in moisture at various temperatures up to 1350^circ C and X-ray diffraction study did not indicate any decomposition at the highest sintering temperature. It is seen that dehydroxylation did not hinder sintering, but decomposition obstructed sintering of both HA and DCP. Ductile-phase reinforcement of hydroxyapatite was achieved by addition of silver particulates (5-30 vol.%) in HA powder compacts. A composite made by sintering 10 vol.% Ag and balance HA at 1200^circ C for 1 h in air had flexural strength of 75 +/- 7 MPa, which was almost double that of pure HA sintered under an identical condition. Silver in the composite melted during sintering, but due to poor wetting, did not spread in between HA particles. The increase in the flexural strength of the composites was thought to be due to crack-bridging and crack-arrest by silver inclusions. Thick films (several μm) of hydroxyapatite were deposited on silicon single crystal placed in close proximity to a plate of apatite- and wollastonite -containing glass and dipped into a simulated body fluid (SBF) at 36^circC. Amorphous calcium phosphate phase present in the glass leached into the SBF, causing supersaturation of Ca^ {2+} and (PO_4)^ {3-} ions. HA films grown on Si(111) showed strong (102) texture. As a contrast hardly any HA film could be grown on Si(100) surface. Our results suggest that the driving force for formation of apatite films arises from lowering of free energy of the supersatured solution by deposition of ions in certain crystallographic arrangements on suitable substrates with low interface energies.

Synthesis and Characterization of Electroresponsive Materials with Applications In: Part I. Second Harmonic Generation. Part II. Organic-Lanthanide Ion Complexes for Electroluminescence and Optical Amplifiers.

NASA Astrophysics Data System (ADS)

Claude, Charles

1995-01-01

Materials for optical waveguides were developed from two different approaches, inorganic-organic composites and soft gel polymers. Inorganic-organic composites were developed from alkoxysilane and organically modified silanes based on nonlinear optical chromophores. Organically modified silanes based on N-((3^' -trialkoxysilyl)propyl)-4-nitroaniline were synthesized and sol-gelled with trimethoxysilane. After a densification process at 190^circC with a corona discharge, the second harmonic of the film was measured with a Nd:YAG laser with a fundamental wavelength of 1064nm, d_{33} = 13pm/V. The decay of the second harmonic was expressed by a stretched bi-exponential equation. The decay time (tau _2) was equal to 3374 hours, and was comparable to nonlinear optical systems based on epoxy/Disperse Orange 1. The processing temperature of the organically modified silane was limited to 200^circC due to the decomposition of the organic chromophore. Soft gel polymers were synthesized and characterized for the development of optical waveguides with dc-electrical field assisted phase-matching. Polymers based on 4-nitroaniline terminated poly(ethylene oxide-co-propylene oxide) were shown to exhibit second harmonic generation that were optically phase-matched in an electrical field. The optical signals were stable and reproducible. Siloxane polymers modified with 1-mercapto-4-nitrobenzene and 1-mercapto-4-methylsulfonylstilbene nonlinear optical chromophores were synthesized. The physical and the linear and nonlinear optical properties of the polymers were characterized. Waveguides were developed from the polymers which were optically phase -matched and had an efficiency of 8.1%. The siloxane polymers exhibited optical phase-matching in an applied electrical field and can be used with a semiconductor laser. Organic lanthanide ion complexes for electroluminescence and optical amplifiers were synthesized and characterized. The complexes were characterized for their thermal and oxidative stability and for their optical properties. Organic-europium ion complexes based on derivatives of 2-benzoyl benzoate are stable to a temperature 70^circ C higher than the europium beta -diketonate complexes. The optical and fluorescence properties of the organic-europium ion complexes were characterized. The methoxy and the t-butyl derivatives of the europium 2-benzoylbenzoate complexes exhibited fluorescence quantum efficiencies that were comparable to europium tris(thenoyl trifluoroacetonate) in methylene chloride but the extinction coefficient was two-thirds of the europium thenoyltrifluoroacetonate complexes. The last complex characterized was the europium bis(diphenylphosphino)imine complex. The complex exhibited thermal stability to 550 ^circC under nitrogen.

Microwave Hybrid Integrated Circuit Applicatins of High Transition Temperature Superconductor

NASA Astrophysics Data System (ADS)

Lu, Shih-Lin

This research work involves microwave characterization of high Tc superconducting (HTS) thin film using microstrip ring resonators, studying the nonlinear properties of HTS thin film transmission lines using two-tone intermodulation technique, coupling mechanisms and coupling factors of microstrip ring resonators side coupled to a microstrip line, two-port S-parameters measurements of GaAs MESFET at low temperature, and the design and implementation of hybrid ring resonator stabilized microwave oscillator using both metal films and superconducting films. A microstrip ring resonators operating at 10 GHz have been fabricated from YBCO HTS thin films deposited on one side of LaAl_2O_3 substrates. Below 60^circ Kelvin the measured unloaded Q of the HTS thin film microstrip ring resonators are more than 1.5 times that of gold film resonators. The two distinct but very close resonance peaks of a ring resonator side coupled to a microstrip line are experimentally identified as due to odd-mode and even-mode coupling. These two mechanisms have different characteristic equivalent circuit models and lead to different coupling coefficients and loaded resonance frequencies. The coupling factors for the two coupling modes are calculated using piecewise coupled line approximations. The two-port S-parameters measurement techniques and GaAs MESFET low temperature DC and microwave characteristics have been investigated. A system errors model including the errors caused by the line constriction at low temperature has been proposed and a temperature errors correction procedure has been developed for the two-port microwave S-parameters measurements at low temperature. The measured GaAs MESFET DC characteristics shows a 20% increase in transconductance at 77^circ K. There is also a 2 db increase in /S21/ at 77^circ K. The microwave oscillator stabilized with both metal and HTS thin film ring resonators have been studied. The tuning ability of the oscillator by a varactor diode has also been investigated. The phase noise performance of one side of the high Tc film oscillator does not show appreciable improvement over the gold film oscillator. With a varactor diode, the oscillator tuning range can be 300 MHz more. Two-tone intermodulation distortion (IMD) at 6.3 GHz in an HTS YBCO superconducting thin film microstrip transmission line on LaAl_2O _3 substrates are experimentally studied. At fixed input power, the 3rd order IMD power as function of temperature shows a minimum at a temperature around 60^circ Kelvin. With DC current applied, the second order IMD is observed and shows a strong functional dependance to the applied DC current and input power.

Bibliography of Soviet Laser Developments, Number 47, May - June 1980.

DTIC Science & Technology

1981-04-09

23 p. (KL, 19/80, 17050) 99 IV. SOURCE ABBREVIATIONS (CIRC Codens) APP (A) (ATPLB) Acta physica polonica BAPS (BAPTA) Bulletin de l’Academie Polonaise...obraztsy, tovarnyye znaki PSS (PSSAB) Physica Status Solidi (A). Applied Research PTE (PRTEA) Pribory i tekhnika eksperimenta RiE (RAELA) Radiotekhnika i

46 CFR 164.120-7 - Acceptance criteria.

Code of Federal Regulations, 2013 CFR

2013-10-01

... Mechanical & Physical Properties of Glass Cloth Base Plastic Laminate (Lengthwise direction of test specimens is parallel to the warp direction of glass fabric.) (1) Tested Under Standard Conditions: (i... ASTM D 695 241 MPa (35,000 ln/in2). (v) Fire retardant MSC Circ. 1006 Pass. (vi) Water absorption, 24...

46 CFR 164.120-7 - Acceptance criteria.

Code of Federal Regulations, 2014 CFR

2014-10-01

... Mechanical & Physical Properties of Glass Cloth Base Plastic Laminate (Lengthwise direction of test specimens is parallel to the warp direction of glass fabric.) (1) Tested Under Standard Conditions: (i... ASTM D 695 241 MPa (35,000 ln/in2). (v) Fire retardant MSC Circ. 1006 Pass. (vi) Water absorption, 24...

46 CFR 164.120-7 - Acceptance criteria.

Code of Federal Regulations, 2012 CFR

2012-10-01

... Mechanical & Physical Properties of Glass Cloth Base Plastic Laminate (Lengthwise direction of test specimens is parallel to the warp direction of glass fabric.) (1) Tested Under Standard Conditions: (i... ASTM D 695 241 MPa (35,000 ln/in2). (v) Fire retardant MSC Circ. 1006 Pass. (vi) Water absorption, 24...

Circ's Up, Budgets Leap

ERIC Educational Resources Information Center

Hoffert, Barbara

2007-01-01

From the ascendance of the reference database and web sites offering endless opportunities for cyber-promotion to the crowds swarming through the doors to avail themselves of new computers, the Internet has transformed the way public libraries do business. That is not news. What is exciting, though, is how the Internet continues to change public…

HIgh-speed flickering and jet formation in GRS 1915+105

NASA Astrophysics Data System (ADS)

Lasso Cabrera, Nestor M.

In this dissertation we study the different phenomena of accretion and relativistic jet formation observed in the microquasar GRS 1915+105. Our final goal is to understand the processes producing the relativistic outflows, as well as their relation with the inflow mechanisms. Initially, we analyze X-ray emission (RXTE PCA and HEXTE) from GRS 1915+105 during and after an X-ray/radio plateau epoch. The high signal-to-noise levels in our observations allow the first published measurement of quasi-periodic oscillations (QPO) RMS values using RXTE/HEXTE data. We find that the spectral energy distribution of the QPO strongly indicates an origin in the hard non-thermal emission component, suggesting a second spectral component to the hard non-thermal X-ray emission. Given the association of the QPOs with the observed jet activity in GRS 1915+105, we suggest that this additional non-thermal X-ray spectral component may be directly linked to the relativistic jet formation process. We also analyze simultaneous X-ray (RXTE/PCA) and near-IR (Palomar 200-inch) observations from the microquasar GRS 1915+105 during two similar low/hard state epochs and two different high X-ray variability epochs -- X-ray classes alpha and beta. The X-ray to IR cross-correlation function (CCF) shows that both low/hard state observations as well as the class beta observations present little or null interaction between the X-ray and IR fluxes, while the class alpha observations present a strong correlation between the X-ray (inner accretion disk) and the IR (compact jet) light curves. We also use the X-ray to IR CCF to study the relative evolution of the two signals and find no significant evolutionary track in any of the epochs. Simulated IR light curves confirm the results of the CCF, showing a flickering IR emission during the class beta high X-ray variability period that strengthens ˜10 s after every X-ray subflare. The existence of a flickering IR emission with frequencies in the range 0.1 to 0.3 Hz that is strongly correlated with the X-ray emission allow us to place the origin of the IR emission in a synchrotron emitting relativistic jet with the IR launch site located at ˜0.02 AU from the accretion disk. These results will be especially relevant for constraining the current models of relativistic jet production in GRS 1915+105 and other microquasars. The second part of this work is dedicated to overcoming the limitation in the acquisition of high time resolution infrared data of microquasars. We introduce the Canarias InfraRed Camera Experiment (CIRCE), a new IR instrument for the 10-meter Gran Telescopio Canarias (GTC). Among other properties, CIRCE is specifically designed for the observation of relativistic jet events in microquasars, and along with the capabilities of the GTC, will enable us to observe any microquasar in the J, H, and K IR bands, with a time resolution of ˜12 Hz and a signal-to-noise level never achieved before. We plan to use CIRCE in the future to confirm the final results of the jet production study of this dissertation. We present the electronics design of CIRCE, including the housekeeping electronics, the Logic Control Unit (LCU), and the readout electronics. We also present the result of the analysis of the image quality tests performed on the CIRCE optical system.

The Philip Morris Information Network: A Library Database on an In-House Timesharing System.

ERIC Educational Resources Information Center

DeBardeleben, Marian Z.; And Others

1983-01-01

Outlines a database constructed at Philip Morris Research Center Library which encompasses holdings and circulation and acquisitions records for all items in the library. Host computer (DECSYSTEM-2060), software (BASIC), database design, search methodology, cataloging, and accessibility are noted; sample search, circ-in profile, end user profiles,…

46 CFR 162.161-2 - Incorporation by reference.

Code of Federal Regulations, 2014 CFR

2014-10-01

...) (June 4, 2008), (“MSC.1/Circ. 1267”), IBR approved for § 162.161-6. (c) National Fire Protection...: SPECIFICATIONS AND APPROVAL ENGINEERING EQUIPMENT Fixed Clean Agent Fire Extinguishing Systems § 162.161-2... from the sources listed below. It is also available for inspection at the National Archives and Records...

46 CFR 162.161-2 - Incorporation by reference.

Code of Federal Regulations, 2013 CFR

2013-10-01

...) (June 4, 2008), (“MSC.1/Circ. 1267”), IBR approved for § 162.161-6. (c) National Fire Protection...: SPECIFICATIONS AND APPROVAL ENGINEERING EQUIPMENT Fixed Clean Agent Fire Extinguishing Systems § 162.161-2... from the sources listed below. It is also available for inspection at the National Archives and Records...

Time Domain Algorithms.

DTIC Science & Technology

1985-09-01

Conitr., vol. AC-2S, No. 1, pp. 07-99, Jan. 1083. [481 A. Fettweis, "Digital Circuits and Systems," ZEEE Trans. Circ. and Sys., vol. CAS-31, No. 1, pp...171 J. G. Proakis, Digital Communications, McGraw-Hill, New York, 1983. 1181 P. Monsen, "Adaptive Equalization of the Slow Fading Channel," ZEEE Tran

Precision Branching Ratio Measurement for the Superallowed &+circ; Emitter ^62Ga

NASA Astrophysics Data System (ADS)

Finlay, Paul; Svensson, C. E.; Austin, R. A. E.; Ball, G. C.; Bandyopadhyay, D.; Chaffey, A.; Chakrawarthy, R. S.; Garrett, P. E.; Grinyer, G. F.; Hackman, G.; Hyland, B.; Kanungo, R.; Leslie, J. R.; Mattoon, C.; Morton, A. C.; Pearson, C. J.; Ressler, J. J.; Sarazin, F.; Savajols, H.

2007-10-01

A high-precision branching ratio measurement for the superallowed &+circ; emitter ^62Ga has been made using the 8π γ-ray spectrometer in conjunction with the SCintillating Electron-Positron Tagging ARray (SCEPTAR) as part of an ongoing experimental program in superallowed Fermi beta decay studies at the Isotope Separator and Accelerator (ISAC) facility at TRIUMF in Vancouver, Canada, which delivered a high-purity beam of ˜10^4 ^62Ga/s in December 2005. The present work represents the highest statistics measurement of the ^62Ga superallowed branching ratio to date. 25 γ rays emitted following non-superallowed decay branches of ^62Ga have been identified and their intensities determined. These data yield a superallowed branching ratio with 10-4 precision, and our observed branch to the first nonanalogue 0^+ state sets a new upper limit on the isospin-mixing correction δC1^1. By comparing our ft value with the world average Ft, we make stringent tests of the different calculations for the isospin-symmetry-breaking correction δC, which is predicted to be large for ^62Ga.

Orbit Alignment in Triple Stars

NASA Astrophysics Data System (ADS)

Tokovinin, Andrei

2017-08-01

The statistics of the angle Φ between orbital angular momenta in hierarchical triple systems with known inner visual or astrometric orbits are studied. A correlation between apparent revolution directions proves the partial orbit alignment known from earlier works. The alignment is strong in triples with outer projected separation less than ˜50 au, where the average Φ is about 20^\\circ . In contrast, outer orbits wider than 1000 au are not aligned with the inner orbits. It is established that the orbit alignment decreases with the increasing mass of the primary component. The average eccentricity of inner orbits in well-aligned triples is smaller than in randomly aligned ones. These findings highlight the role of dissipative interactions with gas in defining the orbital architecture of low-mass triple systems. On the other hand, chaotic dynamics apparently played a role in shaping more massive hierarchies. The analysis of projected configurations and triples with known inner and outer orbits indicates that the distribution of Φ is likely bimodal, where 80% of triples have {{Φ }}< 70^\\circ and the remaining ones are randomly aligned.

A Spectral Approach for Quenched Limit Theorems for Random Expanding Dynamical Systems

NASA Astrophysics Data System (ADS)

Dragičević, D.; Froyland, G.; González-Tokman, C.; Vaienti, S.

2018-06-01

We prove quenched versions of (i) a large deviations principle (LDP), (ii) a central limit theorem (CLT), and (iii) a local central limit theorem for non-autonomous dynamical systems. A key advance is the extension of the spectral method, commonly used in limit laws for deterministic maps, to the general random setting. We achieve this via multiplicative ergodic theory and the development of a general framework to control the regularity of Lyapunov exponents of twisted transfer operator cocycles with respect to a twist parameter. While some versions of the LDP and CLT have previously been proved with other techniques, the local central limit theorem is, to our knowledge, a completely new result, and one that demonstrates the strength of our method. Applications include non-autonomous (piecewise) expanding maps, defined by random compositions of the form {T_{σ^{n-1} ω} circ\\cdotscirc T_{σω}circ T_ω}. An important aspect of our results is that we only assume ergodicity and invertibility of the random driving {σ:Ω\\toΩ} ; in particular no expansivity or mixing properties are required.

Functional Analysis of the Gene Cluster Involved in Production of the Bacteriocin Circularin A by Clostridium beijerinckii ATCC 25752

PubMed Central

Kemperman, Robèr; Jonker, Marnix; Nauta, Arjen; Kuipers, Oscar P.; Kok, Jan

2003-01-01

A region of 12 kb flanking the structural gene of the cyclic antibacterial peptide circularin A of Clostridium beijerinckii ATCC 25752 was sequenced, and the putative proteins involved in the production and secretion of circularin A were identified. The genes are tightly organized in overlapping open reading frames. Heterologous expression of circularin A in Enterococcus faecalis was achieved, and five genes were identified as minimally required for bacteriocin production and secretion. Two of the putative proteins, CirB and CirC, are predicted to contain membrane-spanning domains, while CirD contains a highly conserved ATP-binding domain. Together with CirB and CirC, this ATP-binding protein is involved in the production of circularin A. The fifth gene, cirE, confers immunity towards circularin A when expressed in either Lactococcus lactis or E. faecalis and is needed in order to allow the bacteria to produce bacteriocin. Additional resistance against circularin A is conferred by the activity of the putative transporter consisting of CirB and CirD. PMID:14532033

Automatized Photometric Monitoring of Active Galactic Nuclei with the 46cm Telescope of the Wise Observatory

NASA Astrophysics Data System (ADS)

Pozo Nuñez, Francisco; Chelouche, Doron; Kaspi, Shai; Niv, Saar

2017-09-01

We present the first results of an ongoing variability monitoring program of active galactic nuclei (AGNs) using the 46 cm telescope of the Wise Observatory in Israel. The telescope has a field of view of 1.25^\\circ × 0.84^\\circ and is specially equipped with five narrowband filters at 4300, 5200, 5700, 6200, and 7000 Å to perform photometric reverberation mapping studies of the central engine of AGNs. The program aims to observe a sample of 27 AGNs (V < 17 mag) selected according to tentative continuum and line time delay measurements obtained in previous works. We describe the autonomous operation of the telescope together with the fully automatic pipeline used to achieve high-performance unassisted observations, data reduction, and light curves extraction using different photometric methods. The science verification data presented here demonstrates the performance of the monitoring program in particular for efficiently photometric reverberation mapping of AGNs with additional capabilities to carry out complementary studies of other transient and variable phenomena such as variable stars studies.

Exclusive &-circ; Electro-production from the Neutron in the Resonance Region

NASA Astrophysics Data System (ADS)

Zhang, Jixie

2008-10-01

The study of baryon resonances is crucial to our understanding of nucleon structure and dynamics. Although the excited states of the proton have been studied in great detail, there are very few data available for the neutron resonances because of the difficulty inherent in obtaining a free neutron target. To overcome this limitation, the spectator tagging technique was used in one of the CEBAF Large Acceptance Spectrometer(CLAS) collaboration experiments, Barely off-shell Nuclear Structure (BoNuS), in Hall-B at Jefferson Lab. We have constructed a radial time projection chamber (RTPC) based on the gaseous electron multiplier (GEM) technology to detect recoil protons with momenta from 70 to 200 MeV/c. Electron scattering data were taken in 2005 with beam energies of 2.1, 4.2 and 5.3 GeV using a 7 atm gaseous deuterium target in conjunction with the RTPC and CLAS detectors. We have analyzed exclusive D(e, e' &-circ;p) p events in which the proton was detected either in CLAS or in the RTPC. Preliminary cross sections will be presented for this reaction.

Noncoding RNAs in human intervertebral disc degeneration: An integrated microarray study.

PubMed

Liu, Xu; Che, Lu; Xie, Yan-Ke; Hu, Qing-Jie; Ma, Chi-Jiao; Pei, Yan-Jun; Wu, Zhi-Gang; Liu, Zhi-Heng; Fan, Li-Ying; Wang, Hai-Qiang

2015-09-01

Accumulating evidence indicates that noncoding RNAs play important roles in a multitude of biological processes. The striking findings of miRNAs (microRNAs) and lncRNAs (long noncoding RNAs) as members of noncoding RNAs open up an exciting era in the studies of gene regulation. More recently, the reports of circRNAs (circular RNAs) add fuel to the noncoding RNAs research. Human intervertebral disc degeneration (IDD) is a main cause of low back pain as a disabling spinal disease. We have addressed the expression profiles if miRNAs, lncRNAs and mRNAs in IDD (Wang et al., J Pathology, 2011 and Wan et al., Arthritis Res Ther, 2014). Furthermore, we thoroughly analysed noncoding RNAs, including miRNAs, lncRNAs and circRNAs in IDD using the very same samples. Here we delineate in detail the contents of the aforementioned microarray analyses. Microarray and sample annotation data were deposited in GEO under accession number GSE67567 as SuperSeries. The integrated analyses of these noncoding RNAs will shed a novel light on coding-noncoding regulatory machinery.

Contact angle change during evaporation of near-critical liquids

NASA Astrophysics Data System (ADS)

Nikolayev, Vadim; Hegseth, John; Beysens, Daniel

1998-11-01

An unexpected change of the dynamic contact angle was recently observed in a near-critical liquid-gas system in a space experiment. While the near-critical liquid completely wets a solid under equilibrium conditions, the apparent contact angle changed from 0^circ to about 120^circ during evaporation. We propose an explanation for this phenomenon by taking into account vapor recoil due to evaporation (motion of the vapor from the free liquid surface). This force is normal to the vapor-liquid interface and is directed towards the liquid. It increases sharply near the triple contact line. Near the critical point, where the surface tension force is very weak, the vapor recoil force can be important enough to change the apparent contact angle. A similar effect can also explain the drying of a heater during boiling at high heat flux. The drying greatly reduces the heat transfer to the liquid causing the heater to melt. This phenomenon is called ``boiling crisis", ``burnout" or ``Departure from Nuclear Boiling". We report the preliminary results of the numerical simulation of the liquid evaporation by the Boundary Element method.

A Large Scale Wind Tunnel for the Study of High Reynolds Number Turbulent Boundary Layer Physics

NASA Astrophysics Data System (ADS)

Priyadarshana, Paththage; Klewicki, Joseph; Wosnik, Martin; White, Chris

2008-11-01

Progress and the basic features of the University of New Hampshire's very large multi-disciplinary wind tunnel are reported. The refinement of the overall design has been greatly aided through consultations with an external advisory group. The facility test section is 73 m long, 6 m wide, and 2.5 m nominally high, and the maximum free stream velocity is 30 m/s. A very large tunnel with relatively low velocities makes the small scale turbulent motions resolvable by existing measurement systems. The maximum Reynolds number is estimated at &+circ;= δuτ/ν˜50000, where δ is the boundary layer thickness and uτ is the friction velocity. The effects of scale separation on the generation of the Reynolds stress gradient appearing in the mean momentum equation are briefly discussed to justify the need to attain &+circ; in excess of about 40000. Lastly, plans for future utilization of the facility as a community-wide resource are outlined. This project is supported through the NSF-EPSCoR RII Program, grant number EPS0701730.

Comparative Study of Two InGaAs-Based Reference Radiation Thermometers

NASA Astrophysics Data System (ADS)

Nasibov, H.; Diril, A.; Pehlivan, O.; Kalemci, M.

2017-07-01

More than one decade ago, an InGaAs detector-based transfer standard infrared radiation thermometer working in the temperature range from 150 {^{circ }}\\hbox {C} to 1100 {^{circ }}\\hbox {C} was built at TUBITAK UME in the scope of collaboration with IMGC (INRIM since 2006). During this timescale, the radiation thermometer was used for the dissemination of the radiation temperature scale below the silver fixed-point temperature. Recently, a new radiation thermometer with the same design but with different spectral responsivity was constructed and employed in the laboratory. In this work, we present the comparative study of these thermometers. Furthermore, the paper describes the measurement results of the thermometer's main characteristics such as the size-of-source effect, spectral responsivity, gain ratio, and linearity. Besides, both thermometers were calibrated at the freezing temperatures of indium, tin, zinc, aluminum, and copper reference fixed-point blackbodies. The main study is focused on the impact of the spectral responsivity of thermometers on the interpolation parameters of the Sakuma-Hattori equation. Furthermore, the calibration results and the uncertainty sources are discussed in this paper.

The DIII-D Map -- An Area-Preserving Map for Trajectories of Magnetic Field Lines in the DIII-D Tokamak

NASA Astrophysics Data System (ADS)

Punjabi, Alkesh; Ali, Halima; Boozer, Allen; Evans, Todd

2007-11-01

The EFIT data for the DIII-D shot 115467 3000 ms is used to calculate the generating function for an area-preserving map for trajectories of magnetic field lines in the DIII-D. We call this map the DIII-D map. The generating function is a bivariate polynomial in base vectors &1/2circ;cos(θ) and &1/2circ;sin(θ). ψ is toroidal flux and θ is poloidal angle. The generating function is calculated using a canonical transformation from (ψ,θ) to physical coordinates (R,Z) in the DIII-D [1] and nonlinear regression. The equilibrium generating function gives an excellent representation of the equilibrium flux surfaces in the DIII-D. The DIII-D map is then used to calculate effects of the magnetic perturbations in the DIII-D. Preliminary results of the DIII-D map will be presented. This work is supported by US DOE OFES DE-FG02-01ER54624 and DE-FG02-04ER54793. [1] A. Punjabi, H. Ali, T. Evans, and A. Boozer, Phys Lett A 364 140--145 (2007).

Determination of Membrane Protein Structure by Rotational Resonance NMR: Bacteriorhodopsin

NASA Astrophysics Data System (ADS)

Creuzet, F.; McDermott, A.; Gebhard, R.; van der Hoef, K.; Spijker-Assink, M. B.; Herzfeld, J.; Lugtenburg, J.; Levitt, M. H.; Griffin, R. G.

1991-02-01

Rotationally resonant magnetization exchange, a new nuclear magnetic resonance (NMR) technique for measuring internuclear distances between like spins in solids, was used to determine the distance between the C-8 and C-18 carbons of retinal in two model compounds and in the membrane protein bacteriorhodopsin. Magnetization transfer between inequivalent spins with an isotropic shift separation, δ, is driven by magic angle spinning at a speed ω_r that matches the rotational resonance condition δ = nω_r, where n is a small integer. The distances measured in this way for both the 6-s-cis- and 6-s-trans-retinoic acid model compounds agreed well with crystallographically known distances. In bacteriorhodopsin the exchange trajectory between C-8 and C-18 was in good agreement with the internuclear distance for a 6-s-trans configuration [4.2 angstroms (overset{circ}{mathrm A})] and inconsistent with that for a 6-s-cis configuration (3.1 overset{circ}{mathrm A}). The results illustrate that rotational resonance can be used for structural studies in membrane proteins and in other situations where diffraction and solution NMR techniques yield limited information.

Superconductivity above the lowest Earth temperature in pressurized sulfur hydride

NASA Astrophysics Data System (ADS)

Bianconi, Antonio; Jarlborg, Thomas

2015-11-01

A recent experiment has shown a macroscopic quantum coherent condensate at 203 K, about 19 degrees above the coldest temperature recorded on the Earth surface, 184 K (-89.2 ^\\circ \\text{C}, -128.6 ^\\circ \\text{F}) in pressurized sulfur hydride. This discovery is relevant not only in material science and condensed matter but also in other fields ranging from quantum computing to quantum physics of living matter. It has given the start to a gold rush looking for other macroscopic quantum coherent condensates in hydrides at the temperature range of living matter 200c <400 \\text{K} . We present here a review of the experimental results and the theoretical works and we discuss the Fermiology of \\text{H}3\\text{S} focusing on Lifshitz transitions as a function of pressure. We discuss the possible role of the shape resonance near a neck disrupting Lifshitz transition, in the Bianconi-Perali-Valletta (BPV) theory, for rising the critical temperature in a multigap superconductor, as the Feshbach resonance rises the critical temperature in Fermionic ultracold gases.

A Spectral Approach for Quenched Limit Theorems for Random Expanding Dynamical Systems

NASA Astrophysics Data System (ADS)

Dragičević, D.; Froyland, G.; González-Tokman, C.; Vaienti, S.

2018-01-01

We prove quenched versions of (i) a large deviations principle (LDP), (ii) a central limit theorem (CLT), and (iii) a local central limit theorem for non-autonomous dynamical systems. A key advance is the extension of the spectral method, commonly used in limit laws for deterministic maps, to the general random setting. We achieve this via multiplicative ergodic theory and the development of a general framework to control the regularity of Lyapunov exponents of twisted transfer operator cocycles with respect to a twist parameter. While some versions of the LDP and CLT have previously been proved with other techniques, the local central limit theorem is, to our knowledge, a completely new result, and one that demonstrates the strength of our method. Applications include non-autonomous (piecewise) expanding maps, defined by random compositions of the form {T_{σ^{n-1} ω} circ\\cdotscirc T_{σω}circ T_ω} . An important aspect of our results is that we only assume ergodicity and invertibility of the random driving {σ:Ω\\toΩ} ; in particular no expansivity or mixing properties are required.

The Electromagnetic Counterpart of the Binary Neutron Star Merger LIGO/Virgo GW170817. VI. Radio Constraints on a Relativistic Jet and Predictions for Late-time Emission from the Kilonova Ejecta

DOE PAGES

Alexander, K. D.; Berger, E.; Fong, W.; ...

2017-10-16

Here, we present Very Large Array (VLA) and Atacama Large Millimeter/sub-millimeter Array ALMA radio observations of GW\\,170817, the first Laser Interferometer Gravitational-wave Observatory (LIGO)/Virgo gravitational wave (GW) event from a binary neutron star merger and the first GW event with an electromagnetic (EM) counterpart. Our data include the first observations following the discovery of the optical transient at both the centimeter (more » $13.7$ hours post merger) and millimeter ($2.41$ days post merger) bands. We detect faint emission at 6 GHz at 19.47 and 39.23 days after the merger, but not in an earlier observation at 2.46 d. We do not detect cm/mm emission at the position of the optical counterpart at frequencies of 10-97.5 GHz at times ranging from 0.6 to 30 days post merger, ruling out an on-axis short gamma-ray burst (SGRB) for energies $$\\gtrsim 10^{48}$$ erg. For fiducial SGRB parameters, our limits require an observer viewer angle of $$\\gtrsim 20^{\\circ}$$. The radio and X-ray data can be jointly explained as the afterglow emission from an SGRB with a jet energy of $$\\sim 10^{49}-10^{50}$$ erg that exploded in a uniform density environment with $$n\\sim 10^{-4}-10^{-2}$$ cm$$^{-3}$$, viewed at an angle of $$\\sim 20^{\\circ}-40^{\\circ}$$ from the jet axis. Using the results of our light curve and spectral modeling, in conjunction with the inference of the circumbinary density, we predict the emergence of late-time radio emission from the deceleration of the kilonova (KN) ejecta on a timescale of $$\\sim 5-10$$ years that will remain detectable for decades with next-generation radio facilities, making GW\\,170817 a compelling target for long-term radio monitoring.« less

The Electromagnetic Counterpart of the Binary Neutron Star Merger LIGO/Virgo GW170817. VI. Radio Constraints on a Relativistic Jet and Predictions for Late-time Emission from the Kilonova Ejecta

DOE Office of Scientific and Technical Information (OSTI.GOV)

Alexander, K. D.; Berger, E.; Fong, W.

Here, we present Very Large Array (VLA) and Atacama Large Millimeter/sub-millimeter Array ALMA radio observations of GW\\,170817, the first Laser Interferometer Gravitational-wave Observatory (LIGO)/Virgo gravitational wave (GW) event from a binary neutron star merger and the first GW event with an electromagnetic (EM) counterpart. Our data include the first observations following the discovery of the optical transient at both the centimeter (more » $13.7$ hours post merger) and millimeter ($2.41$ days post merger) bands. We detect faint emission at 6 GHz at 19.47 and 39.23 days after the merger, but not in an earlier observation at 2.46 d. We do not detect cm/mm emission at the position of the optical counterpart at frequencies of 10-97.5 GHz at times ranging from 0.6 to 30 days post merger, ruling out an on-axis short gamma-ray burst (SGRB) for energies $$\\gtrsim 10^{48}$$ erg. For fiducial SGRB parameters, our limits require an observer viewer angle of $$\\gtrsim 20^{\\circ}$$. The radio and X-ray data can be jointly explained as the afterglow emission from an SGRB with a jet energy of $$\\sim 10^{49}-10^{50}$$ erg that exploded in a uniform density environment with $$n\\sim 10^{-4}-10^{-2}$$ cm$$^{-3}$$, viewed at an angle of $$\\sim 20^{\\circ}-40^{\\circ}$$ from the jet axis. Using the results of our light curve and spectral modeling, in conjunction with the inference of the circumbinary density, we predict the emergence of late-time radio emission from the deceleration of the kilonova (KN) ejecta on a timescale of $$\\sim 5-10$$ years that will remain detectable for decades with next-generation radio facilities, making GW\\,170817 a compelling target for long-term radio monitoring.« less

Determining the locations of the various CIRC recording format information blocks (user data blocks, C2 and C1 words and EFM frames) on a recorded compact disc

NASA Technical Reports Server (NTRS)

Howe, Dennis G.

1993-01-01

Just prior to its being EFM modulated (i.e., converted to eight-to-fourteen channel data by the EFM encoder) and written to a Compact Disc (CD), information that passes through the CIRC Block Encoder is grouped into 33-byte blocks referred to as EFM frames. Twenty four of the bytes that make up a given EFM frame are user data that was input into the CIRC encoder at various (different) times, 4 of the bytes of this same EFM frame were created by the C2 ECC encoder (each at a different time), and another 4 were created by the C1 ECC encoder (again, each at a different time). The one remaining byte of the given EFM frame, which is known as the EFM frame C&D (for Control & Display) byte, carries information that identifies which portion of the current disc program track the given EFM frame belongs to and also specifies the location of the given EFM frame on the disc (in terms of a time stamp that has a resolution of l/75th second, or 98 EFM frames). (Note: since the program track and time information is stored as a 98-byte word, a logical group consisting of 98 consecutive EFM frames must be read, and their respective C&D bytes must be catenated and decoded, before the program track identification and time position information that pertains to the entire block of 98 EFM frames can be obtained.) The C&D byte is put at the start (0th byte) of an EFM frame in real time; its placement completes the construction of the EFM frame - it is assigned just before the EFM frame enters the EFM encoder. Four distinct blocks of data are referred to: 24-byte User Input Data Blocks; 28-byte C2 words; 32-byte C1 words; and 33-byte EFM frames.

The Electromagnetic Counterpart of the Binary Neutron Star Merger LIGO/Virgo GW170817. VI. Radio Constraints on a Relativistic Jet and Predictions for Late-time Emission from the Kilonova Ejecta

DOE Office of Scientific and Technical Information (OSTI.GOV)

Alexander, K. D.; Berger, E.; Fong, W.

2017-10-16

We present Very Large Array (VLA) and Atacama Large Millimeter/sub-millimeter Array ALMA radio observations of GW\\,170817, the first Laser Interferometer Gravitational-wave Observatory (LIGO)/Virgo gravitational wave (GW) event from a binary neutron star merger and the first GW event with an electromagnetic (EM) counterpart. Our data include the first observations following the discovery of the optical transient at both the centimeter (more » $13.7$ hours post merger) and millimeter ($2.41$ days post merger) bands. We detect faint emission at 6 GHz at 19.47 and 39.23 days after the merger, but not in an earlier observation at 2.46 d. We do not detect cm/mm emission at the position of the optical counterpart at frequencies of 10-97.5 GHz at times ranging from 0.6 to 30 days post merger, ruling out an on-axis short gamma-ray burst (SGRB) for energies $$\\gtrsim 10^{48}$$ erg. For fiducial SGRB parameters, our limits require an observer viewer angle of $$\\gtrsim 20^{\\circ}$$. The radio and X-ray data can be jointly explained as the afterglow emission from an SGRB with a jet energy of $$\\sim 10^{49}-10^{50}$$ erg that exploded in a uniform density environment with $$n\\sim 10^{-4}-10^{-2}$$ cm$$^{-3}$$, viewed at an angle of $$\\sim 20^{\\circ}-40^{\\circ}$$ from the jet axis. Using the results of our light curve and spectral modeling, in conjunction with the inference of the circumbinary density, we predict the emergence of late-time radio emission from the deceleration of the kilonova (KN) ejecta on a timescale of $$\\sim 5-10$$ years that will remain detectable for decades with next-generation radio facilities, making GW\\,170817 a compelling target for long-term radio monitoring.« less

Lorentz force electrical impedance tomography using magnetic field measurements

NASA Astrophysics Data System (ADS)

Zengin, Reyhan; Güneri Gençer, Nevzat

2016-08-01

In this study, magnetic field measurement technique is investigated to image the electrical conductivity properties of biological tissues using Lorentz forces. This technique is based on electrical current induction using ultrasound together with an applied static magnetic field. The magnetic field intensity generated due to induced currents is measured using two coil configurations, namely, a rectangular loop coil and a novel xy coil pair. A time-varying voltage is picked-up and recorded while the acoustic wave propagates along its path. The forward problem of this imaging modality is defined as calculation of the pick-up voltages due to a given acoustic excitation and known body properties. Firstly, the feasibility of the proposed technique is investigated analytically. The basic field equations governing the behaviour of time-varying electromagnetic fields are presented. Secondly, the general formulation of the partial differential equations for the scalar and magnetic vector potentials are derived. To investigate the feasibility of this technique, numerical studies are conducted using a finite element method based software. To sense the pick-up voltages a novel coil configuration (xy coil pairs) is proposed. Two-dimensional numerical geometry with a 16-element linear phased array (LPA) ultrasonic transducer (1 MHz) and a conductive body (breast fat) with five tumorous tissues is modeled. The static magnetic field is assumed to be 4 Tesla. To understand the performance of the imaging system, the sensitivity matrix is analyzed. The sensitivity matrix is obtained for two different locations of LPA transducer with eleven steering angles from -{{25}\\circ} to {{25}\\circ} at intervals of {{5}\\circ} . The characteristics of the imaging system are shown with the singular value decomposition (SVD) of the sensitivity matrix. The images are reconstructed with the truncated SVD algorithm. The signal-to-noise ratio in measurements is assumed 80 dB. Simulation studies based on the sensitivity matrix analysis reveal that perturbations with 5~\\text{mm}× 5 mm size can be detected up to a 3.5 cm depth.

circlncRNAnet: an integrated web-based resource for mapping functional networks of long or circular forms of noncoding RNAs.

PubMed

Wu, Shao-Min; Liu, Hsuan; Huang, Po-Jung; Chang, Ian Yi-Feng; Lee, Chi-Ching; Yang, Chia-Yu; Tsai, Wen-Sy; Tan, Bertrand Chin-Ming

2018-01-01

Despite their lack of protein-coding potential, long noncoding RNAs (lncRNAs) and circular RNAs (circRNAs) have emerged as key determinants in gene regulation, acting to fine-tune transcriptional and signaling output. These noncoding RNA transcripts are known to affect expression of messenger RNAs (mRNAs) via epigenetic and post-transcriptional regulation. Given their widespread target spectrum, as well as extensive modes of action, a complete understanding of their biological relevance will depend on integrative analyses of systems data at various levels. While a handful of publicly available databases have been reported, existing tools do not fully capture, from a network perspective, the functional implications of lncRNAs or circRNAs of interest. Through an integrated and streamlined design, circlncRNAnet aims to broaden the understanding of ncRNA candidates by testing in silico several hypotheses of ncRNA-based functions, on the basis of large-scale RNA-seq data. This web server is implemented with several features that represent advances in the bioinformatics of ncRNAs: (1) a flexible framework that accepts and processes user-defined next-generation sequencing-based expression data; (2) multiple analytic modules that assign and productively assess the regulatory networks of user-selected ncRNAs by cross-referencing extensively curated databases; (3) an all-purpose, information-rich workflow design that is tailored to all types of ncRNAs. Outputs on expression profiles, co-expression networks and pathways, and molecular interactomes, are dynamically and interactively displayed according to user-defined criteria. In short, users may apply circlncRNAnet to obtain, in real time, multiple lines of functionally relevant information on circRNAs/lncRNAs of their interest. In summary, circlncRNAnet provides a "one-stop" resource for in-depth analyses of ncRNA biology. circlncRNAnet is freely available at http://app.cgu.edu.tw/circlnc/. © The Authors 2017. Published by Oxford University Press.

A Radio-Polarisation and Rotation Measure Study of the Gum Nebula and Its Environment

NASA Astrophysics Data System (ADS)

Purcell, C. R.; Gaensler, B. M.; Sun, X. H.; Carretti, E.; Bernardi, G.; Haverkorn, M.; Kesteven, M. J.; Poppi, S.; Schnitzeler, D. H. F. M.; Staveley-Smith, L.

2015-05-01

The Gum Nebula is 36°-wide shell-like emission nebula at a distance of only ˜450 pc. It has been hypothesized to be an old supernova remnant, fossil H ii region, wind-blown bubble, or combination of multiple objects. Here we investigate the magneto-ionic properties of the nebula using data from recent surveys: radio-continuum data from the NRAO VLA and S-band Parkes All Sky Surveys, and H α data from the Southern H-Alpha Sky Survey Atlas. We model the upper part of the nebula as a spherical shell of ionized gas expanding into the ambient medium. We perform a maximum-likelihood Markov chain Monte Carlo fit to the NVSS rotation measure data, using the H α data to constrain average electron density in the shell ne. Assuming a latitudinal background gradient in rotation measure, we find {{n}e}=1.3-0.4+0.4 c{{m}-3}, angular radius {{φ }outer}=22\\buildrel{\\circ}\\over{.} 7-0.1+0.1, shell thickness dr=18.5-1.4+1.5 pc, ambient magnetic field strength {{B}0}=3.9-2.2+4.9 μ G, and warm gas filling factor f=0.3-0.1+0.3. We constrain the local, small-scale (˜260 pc) pitch-angle of the ordered Galactic magnetic field to +7{}^\\circ ≲ \\wp ≲ +44{}^\\circ , which represents a significant deviation from the median field orientation on kiloparsec scales (˜-7.°2). The moderate compression factor X=6.0-2.5+5.1 at the edge of the H α shell implies that the “old supernova remnant” origin is unlikely. Our results support a model of the nebula as a H ii region around a wind-blown bubble. Analysis of depolarization in 2.3 GHz S-PASS data is consistent with this hypothesis and our best-fitting values agree well with previous studies of interstellar bubbles.

Unified Model for the Overall Efficiency of Inlets Sampling from Horizontal Aerosol Flows

NASA Astrophysics Data System (ADS)

Hangal, Sunil Pralhad

When sampling aerosols from ambient or industrial air environments, the sampled aerosol must be representative of the aerosol in the free stream. The changes that occur during sampling must be assessed quantitatively so that sampling errors can be compensated for. In this study, unified models have been developed for the overall efficiency of tubular sharp-edged inlets sampling from horizontal aerosol flows oriented at 0 to 90^circ relative to the wind direction in the vertical (pitch) and horizontal plane(yaw). In the unified model, based on experimental data, the aspiration efficiency is represented by a single equation with different inertial parameters at 0 to 60^ circ and 45 to 90^circ . Tnt transmission efficiency is separated into two components: one due to gravitational settling in the boundary layer and the other due to impaction. The gravitational settling component is determined by extending a previously developed isoaxial sampling model to nonisoaxial sampling. The impaction component is determined by a new model that quantifies the particle losses caused by wall impaction. The model also quantifies the additional particle losses resulting from turbulent motion in the vena contracta which is formed in the inlet when the inlet velocity is higher than the wind velocity. When sampling aerosols in ambient or industrial environments with an inlet, small changes in wind direction or physical constraints in positioning the inlet in the system necessitates the assessment of sampling efficiency in both the vertical and horizontal plane. The overall sampling efficiency of tubular inlets has been experimentally investigated in yaw and pitch orientations at 0 to 20 ^circ from horizontal aerosol flows using a wind tunnel facility. The model for overall sampling efficiency has been extended to include both yaw and pitch sampling based on the new data. In this model, the difference between yaw and pitch is expressed by the effect of gravity on the impaction process inside the inlet described by a newly developed gravity effect angle. At yaw, the gravity effect angle on the wall impaction process does not change with sampling angle. At pitch, the gravity effect on the impaction process results in particle loss increase for upward and decrease for downward sampling. Using the unified model, graphical representations have been developed for sampling at small angles. These can be used in the field to determine the overall sampling efficiency of inlets at several operating conditions and the operating conditions that result in an acceptable sampling error. Pitch and diameter factors have been introduced for relating the efficiency values over a wide range of conditions to those of a reference condition. The pitch factor determines the overall sampling efficiency at pitch from yaw values, and the diameter factor determines the overall sampling efficiency at different inlet diameters.

Gamma delta T cells and the immune response to respiratory syncytial virus infection

USDA-ARS?s Scientific Manuscript database

'd T cells are a subset of nonconventional T cells that play a critical role in bridging the innate and adaptive arms of the immune system. 'd T cells are particularly abundant in ruminant species and may constitute of up 60% of the circulating lymphocyte pool in young cattle. The frequency of circ...

Thinking Like a Scientist About Real-World Problems: The Cornell Institute for Research on Children Science Education Program

ERIC Educational Resources Information Center

Williams, Wendy, M.; Papierno, Paul, B.; Makel, Matthew, C.; Ceci, Stephen, J.

2004-01-01

We describe a new educational program developed by the Cornell Institute for Research on Children (CIRC), a research and outreach center funded by the National Science Foundation. Thinking Life A Scientist targets students from groups historically underrepresented in science (i.e., girls, people of color, and people from disadvantaged…

Acute Electrocardiographic ST Segment Elevation May Predict Hypotension in a Swine Model of Severe Cyanide Toxicity

DTIC Science & Technology

2012-04-21

model with severe acidosis (pH 6.8), hyperkalemia (up to 10 meq/L), hypoglycemia, and hypoxia and reported that ECG electrical changes were not directly...hypoxia, hyperkalemia , and acidosis on intracellular and extracellular poten tials and metabolism in the isolated porcine heart. Circ Res 46 (5):634

78 FR 2479 - Shipping Coordinating Committee; Notice of Committee Meeting

Federal Register 2010, 2011, 2012, 2013, 2014

2013-01-11

... Meeting The Shipping Coordinating Committee (SHC) will conduct an open meeting at 9:30 a.m. on Thursday... Equipment to be held at the IMO Headquarters, United Kingdom, March 18-22, 2013. The agenda items to be... provisions of MSC.1/Circ.1206/Rev.1 mandatory; --Development of new framework of requirements for life-saving...

76 FR 9358 - Notice of an Open Meeting of the Advisory Committee on Water Information (ACWI)

Federal Register 2010, 2011, 2012, 2013, 2014

2011-02-17

...) During the afternoon, some or all of the seven USGS science strategic planning teams (SSPTs) will present information about their activities and solicit ACWI feedback. The USGS SSPTs are part of a new science... strategic science plan ( http://pubs.usgs.gov/circ/2007/1309/ ), which was released in 2007, identified six...

Looking at CIRC through Quantitative Lenses: Can It Improve the Reading Comprehension of Filipino ESL Learners?

ERIC Educational Resources Information Center

Gonzales, Wilkinson Daniel Wong; Torres, Patrisha Lliane

2015-01-01

Several pressing issues in reading instruction have prompted educators world-wide to conduct researches on how to best improve reading comprehension skills. Although there is a wealth of reading comprehension researches done with EFL learners and native English speakers, there seems to be limited published studies conducted in the Philippine ESL…

Regulation of LPS-induced tissue factor expression in human monocytic THP-1 cells by curcumin

USDA-ARS?s Scientific Manuscript database

Tissue factor (TF) is a transmembrane receptor, which initiates thrombotic episodes associated with various diseases. In addition to membrane-bound TF, we have discovered an alternatively spliced form of human TF mRNA. It was later confirmed that this form of TF mRNA expresses a soluble protein circ...

Cooperative Learning Model toward a Reading Comprehensions on the Elementary School

ERIC Educational Resources Information Center

Murtono

2015-01-01

The purposes of this research are: (1) description of reading skill the students who join in CIRC learning model, Jigsaw learning model, and STAD learning model; (2) finding out the effective of learning model cooperative toward a reading comprehensions between the students who have high language logic and low language logic; and (3) finding out…

Coordinating Council. Second Meeting: International Acquisitions

NASA Technical Reports Server (NTRS)

1990-01-01

The theme of this NASA Scientific and Technical Information Program Coordinating Council was International Acquisitions. Included are both visuals for presentations and reports on discussions related to the topics. Presentations were made on the following topics: Coordination council organization international plan, STI global network, International aerospace climate, Foreign exchange program, Foreign activities RMS & AIAA, NASA translation program, A.F. machine translation system, and CIRC cooperation.

Speckle Interferometry at the U.S. Naval Observatory. 20th

DTIC Science & Technology

2015-10-06

W. 1936, MNRAS, 96, 266 [Mlb1936] Muterspaugh, M. W., Hartkopf, W. I., Lane, B. F., et al. 2010, AJ, 140, 1623 [Mut2010b] Novakovic , B. 2006, IAU...C26 Circ., 158 [Nov2006] Novakovic , B. 2008, Obs, 128, 56 [Nov2008b] Novakovic , B., & Todorovic, N. 2006, Serbian AJ, 172, 21 [Nov2006e] Olevic, D. 2002

Nonlinear Optical Response of Polar Semiconductors in the Terahertz Range

NASA Astrophysics Data System (ADS)

Roman, Eric; Yates, Jonathan; Veithen, Marek; Vanderbilt, David; Souza, Ivo

2006-03-01

Using the Berry-phase finite-field method, we compute from first-principles the recently measured infrared (IR) dispersion of the nonlinear susceptibility (2)circ in III-V zincblende semiconductors. At far-IR (terahertz) frequencies, in addition to the purely electronic response (2)circ∞, the total (2)circ depends on three other parameters, C1, C2, and C3, describing the contributions from ionic motion. They relate to the TO Raman polarizability and the second-order displacement-induced dielectric polarization and forces, respectively. Contrary to a widely-accepted model, but in agreement with the recent experiments on GaAs, ^1 we find that the contribution from mechanical anharmonicity dominates over electrical anharmonicity. By using Richardson extrapolation to evaluate the Berry's phase in k-space by finite differences, we are able to improve the convergence of the nonlinear susceptibility from the usual O[(δk)^2] to O[(δk)^4], dramatically reducing the computational cost. T. Dekorsy, V. A. Yakovlev, W. Seidel, M. Helm, and F. Keilmann, Phys. Rev. Lett. 90, 055508 (2003). C. Flytzanis, Phys. Rev. B 6, 1264 (1972). R. Umari and A. Pasquarello, Phys. Rev. B 68, 085114 (2003).

Multi-step splicing of sphingomyelin synthase linear and circular RNAs.

PubMed

Filippenkov, Ivan B; Sudarkina, Olga Yu; Limborska, Svetlana A; Dergunova, Lyudmila V

2018-05-15

The SGMS1 gene encodes the enzyme sphingomyelin synthase 1 (SMS1), which is involved in the regulation of lipid metabolism, apoptosis, intracellular vesicular transport and other significant processes. The SGMS1 gene is located on chromosome 10 and has a size of 320 kb. Previously, we showed that dozens of alternative transcripts of the SGMS1 gene are present in various human tissues. In addition to mRNAs that provide synthesis of the SMS1 protein, this gene participates in the synthesis of non-coding transcripts, including circular RNAs (circRNAs), which include exons of the 5'-untranslated region (5'-UTR) and are highly represented in the brain. In this study, using the high-throughput technology RNA-CaptureSeq, many new SGMS1 transcripts were identified, including both intronic unspliced RNAs (premature RNAs) and RNAs formed via alternative splicing. Recursive exons (RS-exons) that can participate in the multi-step splicing of long introns of the gene were also identified. These exons participate in the formation of circRNAs. Thus, multi-step splicing may provide a variety of linear and circular RNAs of eukaryotic genes in tissues. Copyright © 2018 Elsevier B.V. All rights reserved.

Scaling in two-fluid pinch-off

NASA Astrophysics Data System (ADS)

Pommer, Chris; Suryo, Ronald; Subramani, Hariprasad; Harris, Michael; Basaran, Osman

2009-11-01

Two-fluid pinch-off is encountered when drops or bubbles of one fluid are ejected from a nozzle into another fluid or when a compound jet breaks. While the breakup of a drop in a passive environment and that of a passive bubble in a liquid are well understood, the physics of pinch-off when both the inner and outer fluids are dynamically active is inadequately understood. In this talk, the breakup of a compound jet whose core and shell are both incompressible Newtonian fluids is analyzed computationally by a method of lines ALE algorithm which uses finite elements with elliptic mesh generation for spatial discretization and adaptive finite differences for time integration. Pinch-off dynamics are investigated well beyond the limit of experiments set by the wavelength of visible light and that of various algorithms used in the literature. Simulations show that the minimum neck radius r initially scales with time τ before breakup as &αcirc; where α varies over a certain range. However, depending on the values of the governing dimensionless groups, this initial scaling regime may be transitory and, closer to pinch-off, the dynamics may transition to a final asymptotic regime for which r ˜&βcirc;, where β!=α.

Switching properties of SrRuO3/Pb(Zr0.4Ti0.6)O3/SrRuO3 capacitor grown on Cu-coated Si substrate measured at various temperatures

NASA Astrophysics Data System (ADS)

Chen, J. H.; Liu, B. T.; Li, C. R.; Li, X. H.; Dai, X. H.; Guo, J. X.; Zhou, Y.; Wang, Y. L.; Zhao, Q. X.; Ma, L. X.

2014-09-01

SrRuO3(SRO)/Ni-Al/Cu/Ni-Al/SiO2/Si heterostructures annealed at various temperatures are found to remain intact after 750 \\circ\\text{C} annealing. Moreover, a SRO/Pb(Zr0.4Ti0.6)O3 (PZT)/SRO capacitor is grown on a Ni-Al/Cu/Ni-Al/SiO2/Si heterostructure, which is tested up to 100 \\circ\\text{C} to investigate the reliability of the memory capacitor. It is found that besides the good fatigue resistance and retention characteristic, the capacitor, measured at 5 V and room temperature, possesses a large remnant polarization of 25.0 μ \\text{C/cm}2 and a small coercive voltage of 0.83 V, respectively. Its dominant leakage current behavior satisfies the space-charge-limited conduction at various temperatures. Very clear interfaces can be observed from the cross-sectional images of transmission electron microscopy, indicating that the Ni-Al film can be used as a diffusion barrier layer for copper metallization as well as a conducting barrier layer between copper and oxide layer.

Design and Fabrication of 1D and 2D Micro Scanners Actuated by Double Layered Lead Zirconate Titanate (PZT) Bimorph Beams

NASA Astrophysics Data System (ADS)

Tsaur, Jiunnjye; Zhang, Lulu; Maeda, Ryutaro; Matsumoto, Sohei; Khumpuang, Sommawan

2002-06-01

Micro scanners including 1D scanner beams and 2D scanning micromirrors are designed and fabricated. In order to yield large bending force, the sol-gel derived double layered lead zirconate titanate (PZT) structures are developed to be the actuator components. In our developed fabrication process, the use of thermal treatment and the addition of one platinium/titanium film played an important role to yield the well-crystallized perovskite phase and decrease the residual strss of total cantilever structures successfully. In the case of 1D scanner beams with the size of 750× 230 μm2, the optical scanning angle was 41.2 deg with respect to actuation with AC 5 V at 2706 Hz. Under the applied bias of 10 V, the bimorph beam bended upward and the deflection angle of 34.3 deg was measured. A 2D scanning micromirror supported by four suspended double layered PZT actuators was designed to rotate around two orthogonal axes by the operation at different resonant frequencies. While resonating with AC 7.5 V at 3750 Hz and 5350 Hz, the maximum scanning area of 24\\circ× 26\\circ was obtained.

Different Types of Ion Populations Upstream of the 2013 October 8 Interplanetary Shock

NASA Astrophysics Data System (ADS)

Kajdič, Primož; Hietala, Heli; Blanco-Cano, Xóchitl

2017-11-01

We show for the first time that different types of suprathermal ion distributions may exist upstream of a single interplanetary shock. ACE and the two ARTEMIS satellites observed a shock on 2013 October 8. The ARTEMIS P1 and P2 spacecraft first observed field-aligned ions (P1) and gyrating ions (P2) arriving from the shock. These were followed by intermediate ions and later by a diffuse population. At the location of the P2 the shock exhibited an Alfvénic Mach number of M A = 5.7 and was marginally quasi-perpendicular ({θ }{Bn}=47^\\circ ). At P1 spacecraft the shock was weaker (M A = 4.9) and more perpendicular ({θ }{Bn}=61^\\circ ). Consequently, the observed suprathermal ion and ultra-low-frequency wave properties were somewhat different. At P2 the ultra-low-frequency waves are more intense and extend farther upstream from the shock. The energies of field-aligned and gyrating ions in the shock rest-frame were ˜20 keV, which is much more than in the case of the stronger (M A = 6-7) Earth’s bow shock, where they are less than 10 keV.

A WISE Survey of New Star Clusters in the Central Plane Region of the Milky Way

NASA Astrophysics Data System (ADS)

Ryu, Jinhyuk; Lee, Myung Gyoon

2018-04-01

We present the discovery of new star clusters in the central plane region (| l| < 30^\\circ and | b| < 6^\\circ ) of the Milky Way. In order to overcome the extinction problem and the spatial limit of previous surveys, we use the Wide-field Infrared Survey Explorer (WISE) data to find clusters. We also use other infrared survey data in the archive for additional analysis. We find 923 new clusters, of which 202 clusters are embedded clusters. These clusters are concentrated toward the Galactic plane and show a symmetric distribution with respect to the Galactic latitude. The embedded clusters show a stronger concentration to the Galactic plane than the nonembedded clusters. The new clusters are found more in the first Galactic quadrant, while previously known clusters are found more in the fourth Galactic quadrant. The spatial distribution of the combined sample of known clusters and new clusters is approximately symmetric with respect to the Galactic longitude. We estimate reddenings, distances, and relative ages of the 15 class A clusters using theoretical isochrones. Ten of them are relatively old (age >800 Myr) and five are young (age ≈4 Myr).

High-throughput sequencing reveals circular substrates for an archaeal RNA ligase

PubMed Central

Becker, Hubert F.; Héliou, Alice; Djaout, Kamel; Lestini, Roxane; Regnier, Mireille; Myllykallio, Hannu

2017-01-01

ABSTRACT It is only recently that the abundant presence of circular RNAs (circRNAs) in all kingdoms of Life, including the hyperthermophilic archaeon Pyrococcus abyssi, has emerged. This led us to investigate the physiologic significance of a previously observed weak intramolecular ligation activity of Pab1020 RNA ligase. Here we demonstrate that this enzyme, despite sharing significant sequence similarity with DNA ligases, is indeed an RNA-specific polynucleotide ligase efficiently acting on physiologically significant substrates. Using a combination of RNA immunoprecipitation assays and RNA-seq, our genome-wide studies revealed 133 individual circRNA loci in P. abyssi. The large majority of these loci interacted with Pab1020 in cells and circularization of selected C/D Box and 5S rRNA transcripts was confirmed biochemically. Altogether these studies revealed that Pab1020 is required for RNA circularization. Our results further suggest the functional speciation of an ancestral NTase domain and/or DNA ligase toward RNA ligase activity and prompt for further characterization of the widespread functions of circular RNAs in prokaryotes. Detailed insight into the cellular substrates of Pab1020 may facilitate the development of new biotechnological applications e.g. in ligation of preadenylated adaptors to RNA molecules. PMID:28277897

Realtime, Object-oriented Reduction of Parkes Multibeam Data using AIPS++

NASA Astrophysics Data System (ADS)

Barnes, D. G.

An overview of the Australia Telescope National Facility (ATNF) Parkes Multibeam Software is presented. The new thirteen-beam Parkes {21 cm} Multibeam Receiver is being used for the neutral hydrogen (Hi) Parkes All Sky Survey (HIPASS). This survey will search the entire southern sky for Hi in the redshift range {$-1200$ km s$^{-1}$} to {$+12600$ km s$^{-1}$}; with a limiting column density of {$N_Hi \\simeq 5 \\times 1017$ cm$^{-2}$}. Observations for the survey began in late February, 1997, and will continue through to the year 2000. A complete reduction package for the HIPASS survey has been developed, based on the AIPS++ library. The major software component is realtime, and uses advanced inter-process communication coupled to a graphical user interface, provided by AIPS++, to apply bandpass removal, flux calibration, velocity frame conversion and spectral smoothing to 26 spectra of 1024 channels each, every five seconds. AIPS++ connections have been added to ATNF-developed visualization software to provide on-line visual monitoring of the data quality. The non-realtime component of the software is responsible for gridding the spectra into position-velocity cubes; typically 200000 spectra are gridded into an $8^\\circ \\times 8^\\circ$ cube.

Mechanisms of Drying of Skin Forming Materials

NASA Astrophysics Data System (ADS)

Hassan, Haydar Mahmood

Available from UMI in association with The British Library. The literature relating to evaporation from single droplets of pure liquids, and to the drying of droplets containing solids and of droplet sprays has been reviewed. The heat and mass transfer rates for a single droplet suspended from a nozzle were studied within a 42mm I.D. horizontal wind tunnel designed to supply hot dry air, to simulate conditions encountered in practical spray dryer. A novel rotating glass nozzle was developed to facilitate direct measurements of droplet weight and core temperature. This design minimised heat conduction through the nozzle. Revised correlations were obtained for heat and mass transfer coefficients, for evaporation from pure water droplets suspended from a rotating nozzle. (UNFORMATTED TABLE OR EQUATION FOLLOWS)eqalign {rm Nu&= rm 2.0 + 0.27 ({1over B})^{0.18}Re^{0.5}Pr ^{0.33}crrm Sh&= rm 2.0 + 0.575({Ta-Ts over Tamb})^{ -0.04}Re^{0.5}Sc^{0.33 }cr}(TABLE/EQUATION ENDS)Experimental drying studies were carried out on single droplets of different types of skin-forming materials, namely, custard, starch, gelatin, skim milk and fructose at air temperatures ranging from 19^circC to 198 ^circC. Dried crusts were recovered and examined by Scanning Electron Microscopy. Skin-forming materials were classified into three types according to the mechanisms of skin formation. In the first type (typified by droplets of custard and starch) skin formed due to gelatinisation at high temperatures. Increasing the drying temperature resulted in increased crust resistance to mass transfer due to increased granule swelling and the crust resistance was completely transferred to a skin resistance at drying temperatures >150 ^circC. In the second type e.g. gelatin droplets the skin formed immediately drying had taken place at any drying temperature. At drying temperature >60^circC a more resistant skin was formed. In the third type (typified by droplets of skim milk and fructose) the skin appeared on the droplet at a certain stage of the drying process under any drying conditions. As the drying temperature was increased the resistance of the skin to mass transfer increased. The drying rate history of any material depended upon the nature of the skin formed which, in turn, depended upon the drying conditions. A mathematical model was proposed for the drying of the first type of skin-forming material. This was based on the assumption that, once all the granules gelatinised at the gelatinisation temperature, a skin appeared instantaneously on the droplet surface. The experimentally-observed times at which the skin appeared on the droplets surfaces were in excellent agreement with those predicted from the model. The work should assist in understanding the fundamentals of particulate drying processes, particularly when skin -formation occurs and may be a crucial factor in volatiles retention.

Disaster Relief and Emergency Medical Services Project (DREAMS TM): Science, Triage and Treatment (STAT)

DTIC Science & Technology

2004-10-01

and necrosis using CT, magnetic resonance, thermal imaging, and near-infrared spectroscopy. These have led to numerous publications, patents, products...Willerson, Buja, Litovsky) 13. Project II.D ....................................... 99 Thermal Detection and Treatment of Inflammation and Necrosis ...2002). ,’Endotoxin stress- response in cardiomyocytes: NF-kappaB• activation and tumor necrosis factor-alpha expression," Am J Physiol Heart Circ Physiol

Influence of Cooperative Integrated Reading and Composition Technique on Foreign Students' Reading and Writing Skills in Turkish

ERIC Educational Resources Information Center

Varisoglu, Behice

2016-01-01

The purpose of this study was to reveal whether the technique of Cooperative Integrated Reading and Composition (CIRC) in Turkish Language teaching had influence on students' skills in reading and writing. In the study, the mixed method, which included quantitative and qualitative dimensions together, was used. The study group was made up of 16…

Development of a Simulink Library for the Design, Testing and Simulation of Software Defined GPS Radios. With Application to the Development of Parallel Correlator Structures

DTIC Science & Technology

2014-05-01

function Value = Select_Element(Index,Signal) %# eml Value = Signal(Index); Code Listing 1 Code for Selector Block 12 | P a g e 4.3...code for the Simulink function shiftedSignal = fcn(signal,Shift) %# eml shiftedSignal = circshift(signal,Shift); Code Listing 2 Code for CircShift

Comprehensive circular RNA profiling reveals that circular RNA100783 is involved in chronic CD28-associated CD8(+)T cell ageing.

PubMed

Wang, Yu-Hong; Yu, Xu-Hui; Luo, Shan-Shun; Han, Hui

2015-01-01

Ageing brings about the gradual deterioration of the immune system, also known as immunosenescence. The role of non-coding circular RNA in immunosenescence is under studied. Using circular RNA microarray data, we assembled Comparison groups (C1, C2, C3 and C4) that allowed us to compare the circular RNA expression profiles between CD28(+)CD8(+) T cells and CD28(-)CD8(+) T cells isolated from healthy elderly or adult control subjects. Using a step-wise biomathematical strategy, the differentially-expressed circRNAs were identified in C1 (CD28(+)CD8(+) vs CD28(-)CD8(+)T cells in the elderly) and C4 (CD28(-)CD8(+)T cells in the elderly vs in the adult), and the commonly-expressed circRNA species from these profiles were optimized as immunosenescence biomarkers. Four overlapping upregulated circular RNAs (100550, 100783, 101328 and 102592) expressed in cross-comparison between C1 and C4 were validated using quantitative polymerase chain reaction. Of these, only circular RNA100783 exhibited significant validation. None of the down-regulated circular RNAs were expressed in the C1 and the C4 cross-comparisons. Therefore, we further predicted circular RNA100783-targeted miRNA-gene interactions using online DAVID annotation. The analysis revealed that a circular RNA100783-targeted miRNA-mRNA network may be involved in alternative splicing, the production of splice variants, and in the regulation of phosphoprotein expression. Considering the hypothesis of splicing-related biogenesis of circRNAs, we propose that circular RNA100783 may play a role in phosphoprotein-associated functions duringCD28-related CD8(+) T cell ageing. This study is the first to employ circular RNA profiling to investigate circular RNA-micro RNA interactions in ageing human CD8(+)T cell populations and the accompanying loss of CD28 expression. The overlapping expression of circular RNA100783 may represent a novel biomarker for the longitudinal tracking ofCD28-related CD8(+) T cell ageing and global immunosenescence.

Anomalous Moessbauer Fraction in Superparamagnetic Systems.

NASA Astrophysics Data System (ADS)

Mohie-Eldin, Mohie-Eldin Yehia

The biological molecule ferritin and its proven synthetic counterpart polysaccharide iron complex (P.I.C.) have been shown to contain small (<100 ^circ in diameter) antiferromagnetic cores at their centers. Mossbauer studies of these molecules have revealed an anomalous drop in the Mossbauer fraction (f-factor) as the temperature rises above 30^ circK for mammalian ferritin and 60 ^circK for P.I.C. Above the blocking temperature, superparamagnetic relaxation results in the disappearance of hyperfine splitting. This thesis investigates and attempts to resolve this Lamb-Mossbauer f-Factor anomaly in these superparamagnetically relaxing systems. Chapter I deals with a basic review of theories of Mossbauer spectroscopy and superparamagnetism. The analogies in the composition of the two molecules is examined in Chapter II. The long range order technique of magnetization measurements is used in Chapter III to compare magnetic properties of both molecules and to verify the suggestion that the P.I.C. molecule is a good "biomimic" to ferritin based on the identification of ferrihydrite as the major mineral in both, by short range probing techniques such as X-ray diffraction. The anomaly is confirmed in P.I.C.'s Mossbauer spectra in Chapter IV. Different absorbers are used to experimentally investigate the absorber thickness effect on the Mossbauer spectra. The anomaly persists for thin absorbers. Also in Chapter V, data that is treated with FFT procedures to eliminate the thickness effect still exhibit this anomaly. We then investigated the effect of superparamagnetic relaxation on the f-factor. In Chapter VI, spin-lattice relaxation was excluded based upon a calculation of the rate of energy transfer from the spin system to the lattice. We introduce a theory in Chapter VII based on the following process as a plausible explanation of the anomaly: Superparamagnetic relaxation brings about a dynamical displacement of the Mossbauer nucleus through magnetostriction. These displacements produce a Doppler broadening of the Mossbauer spectrum that reduces the apparent f-factor. The temperature dependence of the theoretically calculated f-factor agrees qualitatively with experiment. Finally, there is semi-quantitative agreement if the as yet unknown dimensionless magnetostriction constant were to be on the order of 10^{-3} .

Trend Analysis of Total Ozone Data.

NASA Astrophysics Data System (ADS)

Harris, Neil Richard Peter

The total column ozone data for many Dobson stations are examined for the existence of long-term changes, principally in the period 1965-1986. Analysis of the measurements taken at Arosa, Switzerland from August 1931 to July 1988 reveals a statistically significant wintertime loss in recent years of about 6% compared to historic values. Examination of data from several other ground stations gave similar results, and in addition incongruous features were found in many of the published records. Bojkov (1987/8) produced a set of Provisionally Revised data by adjusting the data using information about the Dobson instrument calibrations made available by the individual stations. Similar winter -time losses are found in an analysis of this Provisionally Revised set of data as are found in the published data. Multiple regression analyses were performed using a model which seeks trends on a monthly basis after allowance for the effects of the solar cycle and the quasi-biennial oscillation. Between 1969 and 1986 the observed decreases in total column ozone in three latitude bands from 30^circ N to 64^circN ranged from -2.3% at the lower latitudes to -6.2% at the higher latitudes during the winter (December through March) and from -0.2% to -1.9% in the summer (May through August). Sensitivity studies are presented which show the robustness of these results to such factors as the length of time considered, the solar cycle, the injection of nitrogen oxides by the nuclear bomb tests which were carried out in the atmosphere in the early 1960's, and the assumed nature of the loss. The seasonal and the latitudinal variations of these losses are qualitatively similar to the predictions of the current 2-D photochemical models of the atmosphere. However the observed losses are greater than the predicted losses by as much as a factor of four at 60^circ N in winter. Finally there is some evidence for longitudinal variations in both the observed trends and in the observed response of total ozone to the atmospheric bomb tests of the early 1960's.

The Reverse Thermal Effect in Epoxy Resins and Moisture Absorption in Semi-Interpenetrating Polymer Networks.

NASA Astrophysics Data System (ADS)

El-Sa'Ad, Leila

1989-12-01

Available from UMI in association with The British Library. Requires signed TDF. Epoxy resins exhibit many desirable properties which make them ideal subjects for use as matrices of composite materials in many commercial, military and space applications. However, due to their high cross-link density they are often brittle. Epoxy resin networks have been modified by incorporating tough, ductile thermoplastics. Such systems are referred to as Semi-Interpenetrating Polymer Networks (Semi-IPN). Systematic modification to the thermoplastics backbone allowed the morphology of the blend to be controlled from a homogeneous one-phase structure to fully separated structures. The moisture absorption by composites in humid environments has been found to lead to a deterioration in the physical and mechanical properties of the matrix. Therefore, in order to utilize composites to their full potential, their response to hot/wet environments must be known. The aims of this investigation were two-fold. Firstly, to study the effect of varying the temperature of exposure at different stages in the absorption process on the water absorption behaviour of a TGDDM/DDS epoxy resin system. Secondly, to study water absorption characteristics, under isothermal conditions, of Semi-Interpenetrating Polymer Networks possessing different morphologies, and develop a theoretical model to evaluate the diffusion coefficients of the two-phase structures. The mathematical treatment used in this analysis was based on Fick's second law of diffusion. Tests were performed on specimens immersed in water at 10 ^circ, 40^circ and 70^circC, their absorption behaviour and swelling behaviour, as a consequence of water absorption, were investigated. The absorption results of the variable temperature absorption tests indicated a saturation dependence on the absorption behaviour. Specimens saturated at a high temperature will undergo further absorption when transferred to a lower temperature. This behaviour was termed the "reverse thermal effect". The swelling results suggested that it is more tightly bound water in the polymer which takes part in the reverse thermal effect. The absorption results for the Semi-Interpenetrating Polymer Networks suggested that the two key parameters which affected the moisture uptake were the morphology of the network and the percentage of epoxy resin in the system.

Effects of bacteria on CdS thin films used in technological devices

NASA Astrophysics Data System (ADS)

Alpdoğan, S.; Adıgüzel, A. O.; Sahan, B.; Tunçer, M.; Metin Gubur, H.

2017-04-01

Cadmium sulfide (CdS) thin films were fabricated on glass substrates by the chemical bath deposition method at 70 {}^\\circ \\text{C} considering deposition times ranging from 2 h to 5 h. The optical band gaps of CdS thin films were found to be in the 2.42-2.37 eV range. CdS thin films had uniform spherical nano-size grains which had polycrystalline, hexagonal and cubic phases. The films had a characteristic electrical resistivity of the order of {{10}5} Ω \\text{cm} and n-type conductivity at room condition. CdS thin films were incubated in cultures of B.domonas aeruginosa and Staphylococcus aureus, which exist abundantly in the environment, and form biofilms. SEM images showed that S. aureus and K. pneumonia were detected significantly on the film surfaces with a few of P. aeruginosa and B. subtilis cells attached. CdS thin film surface exhibits relatively good resistance to the colonization of P. aeruginosa and B. subtilis. Optical results showed that the band gap of CdS thin films which interacted with the bacteria is 2.42 \\text{eV} . The crystal structure and electrical properties of CdS thin films were not affected by bacterial adhesion. The antimicrobial effect of CdS nanoparticles was different for different bacterial strains.

GaAsBi/GaAs multi-quantum well LED grown by molecular beam epitaxy using a two-substrate-temperature technique

NASA Astrophysics Data System (ADS)

Kisan Patil, Pallavi; Luna, Esperanza; Matsuda, Teruyoshi; Yamada, Kohki; Kamiya, Keisuke; Ishikawa, Fumitaro; Shimomura, Satoshi

2017-03-01

We report a GaAs0.96Bi0.04/GaAs multiple quantum well (MQW) light emitting diode (LED) grown by molecular beam epitaxy using a two-substrate-temperature (TST) technique. In particular, the QWs and the barriers in the intrinsic region were grown at the different temperatures of {T}{{GaAsBi}} = 350 °C and {T}{{GaAs}} = 550 ^\\circ {{C}}, respectively. Investigations of the microstructure using transmission electron microscopy (TEM) reveal homogeneous MQWs free of extended defects. Furthermore, the local determination of the Bi distribution profile across the MQWs region using TEM techniques confirm the uniform Bi distribution, while revealing a slightly chemically graded GaAs-on-GaAsBi interface due to Bi surface segregation. Despite this small broadening, we found that Bi segregation is significantly reduced (up to 18% reduction) compared to previous reports on Bi segregation in GaAsBi/GaAs MQWs. Hence, the TST procedure proves as a very efficient method to reduce Bi segregation and thus increase the quality of the layers and interfaces. These improvements positively reflect in the optical properties. Room temperature photoluminescence and electroluminescence (EL) at 1.23 μm emission wavelength are successfully demonstrated using TST MQWs containing less Bi content than in previous reports. Finally, LED fabricated using the present TST technique show current-voltage (I-V) curves with a forward voltage of 3.3 V at an injection current of 130 mA under 1.0 kA cm-2 current excitation. These results not only demonstrate that TST technique provides optical device quality GaAsBi/GaAs MQWs but highlight the relevance of TST-based growth techniques on the fabrication of future heterostructure devices based on dilute bismides.

Far Forward Battlefield Telemedicine: Ultrasonic Guidance in Diagnosis and Emergency Therapeutics

DTIC Science & Technology

2006-08-01

bicuspid aortic stenosis . J Am Soc Echocardiogr. 2005 Dec;18(12):1392-8. 44. Eto Y, Yamada H, Shin JH, Agler DA, Tsujino H, Qin JX, Saracino G, Greenberg...nitroprusside in aortic stenosis associated with severe heart failure: pressure- volume loop analysis using a numerical model. Am J Physiol Heart Circ...3D echocardiography, including exercise and intraoperative (epicardial) examinations, with quantitative validation in aneurysmal ventricles,3 aortic

Tissue Oxygenation Monitoring using Resonance Raman Spectroscopy during Hemorrhage

DTIC Science & Technology

2013-12-27

saturation measurements using resonance Raman intravital micros- copy. Am J Physiol Heart Circ Physiol. 2005;289:H488 H495. 14. Ward KR, Ivatury RR, Barbee...Nighswander-Rempel SP, Kupriyanov VV, Shaw RA. Relative contribu- tions of hemoglobin and myoglobin to near-infrared spectroscopic images of cardiac tissue...DC, Shapiro NI. The microcirculation image quality score: development and preliminary evaluation of a proposed approach to grading quality of image

Inspiratory Resistance as a Potential Treatment for Orthostatic Intolerance and Hemorrhagic Shock

DTIC Science & Technology

2005-04-01

central blood volume by forcing the thoracic muscles to develop increased negative pressure , thus drawing venous blood from extrathoracic cavi- ties...cardiac baroreflex sensitivity associated with re- ductions of central blood volume during lower body negative pressure (LBNP) are reversed with...9:621–26. 8. Chapleau MW, Abboud FM. Contrasting effects of static and pulsatile pressure on carotid baroreceptor activity in dogs. Circ Res 1987; 61

Low-mass Stellar and Substellar Companions to sdB Stars

NASA Astrophysics Data System (ADS)

Geier, S.; Classen, L.; Brünner, P.; Nagel, K.; Schaffenroth, V.; Heuser, C.; Heber, U.; Drechsel, H.; Edelmann, H.; Koen, C.; O'Toole, S. J.; Morales-Rueda, L.

2012-03-01

It has been suggested that besides stellar companions, substellar objects in close orbits may be able to trigger mass loss in a common envelope phase and form hot subdwarfs. In an ongoing project we search for close substellar companions combining time resolved high resolution spectroscopy with photometry. We determine the fraction of as yet undetected radial velocity variable systems from a sample of 27 apparently single sdB stars to be ˜eq16%. We discovered low-mass stellar companions to the He-sdB CPD-20circ 1123 and the pulsator KPD 0629-0016. The brown dwarf reported to orbit the eclipsing binary SDSS J0820+0008 could be confirmed by an analysis of high resolution spectra taken with UVES. Reflection effects have been detected in the light curves of the known sdB binaries CPD -64circ 481 and BPS CS 22169-0001. The inclinations of these systems must be much higher than expected and the most likely companion masses are in the substellar regime. Finally, we determined the orbit of the sdB binary PHL 457, which has a very small radial velocity amplitude and may host the lowest mass substellar companion known. The implications of these new results for the open question of sdB formation are discussed.

Drug Loading of Mesoporous Silicon

NASA Astrophysics Data System (ADS)

Moffitt, Anne; Coffer, Jeff; Wang, Mengjia

2011-03-01

The nanostructuring of crystalline solids with low aqueous solubilities by their incorporation into mesoporous host materials is one route to improve the bioavailability of such solids. Earlier studies suggest that mesoporous Si (PSi), with pore widths in the range of 5-50 nm, is a candidate for such an approach. In this presentation, we describe efforts to load curcumin into free-standing microparticles of PSi. Curcumin is a compound extracted from turmeric root, which is an ingredient of curry. Curucmin has shown activity against selected cancer cell lines, bacteria, and other medical conditions. However, curcumin has a very low bioavailability due to its extremely low water solubility (0.6 μ g/mL). Incorporation of curcumin was achieved by straightforward loading of the molten solid at 185circ; C. Loading experiments were performed using PSi particles of two different size ranges, 45-75 μ m and 150-250 μ m. Longer loading times and ratio of curcumin to PSi leads to a higher percentage of loaded curcumin in both PSi particle sizes (as determined by weight difference). The extent of curcumin crystallinity was assessed by x-ray diffraction (XRD). The solubility and release kinetics of loaded curcumin from the PSi was determined by extraction into water at 37circ; C, with analysis using UV-VIS spectrometry. NSF-REU and TCU.

Towards fundamental understanding of ultracold KRb

NASA Astrophysics Data System (ADS)

Kotochigova, Svetlana

2009-05-01

The recent formation of ultracold KRb molecules in their absolute rovibrational ground state [1] has created great promise for study of collective phenomena that rely on the long-range interactions between polar molecules. Here we discuss the theoretical analysis of various essential properties of the KRb molecules [2] that accompanied these experimental advances. This analysis is based on multi-channel bound-state calculations of both ground and excited electronic states. We have found that the theoretical hyperfine and Zeeman mixed X^1&+circ; and a^3&+circ; vibrational structure shows excellent agreement with the experimentally observed structure. In addition, multi-channel calculations of the rovibrational structure of the excited state potentials have allowed us to find the optimal transitions to the lowest v=0 vibrational levels. Finally, we examine the dynamic polarizability of vibrationally cold KRb molecules as a function of laser frequency. Based on this knowledge, laser frequencies can be selected to minimize decoherence from loss of molecules due to spontaneous or laser-induced transitions. [1] K.-K. Ni, S. Ospelkaus, M. H. G. de Miranda, A. Peer, B. Neyenhuis, J. J. Zirbel, S. Kotochigova, P. S. Julienne, D. S. Jin, and J. Ye, Science 322, 231 (2008). [2] S. Kotochigova, E. Tiesinga, and P. S. Julienne, submitted to New J. Phys. (2009).

Eccentric resistance training intensity may affect the severity of exercise induced muscle damage.

PubMed

Hasenoehrl, Timothy; Wessner, Barbara; Tschan, Harald; Vidotto, Claudia; Crevenna, Richard; Csapo, Robert

2017-09-01

The aim of the present study was to assess the role of eccentric exercise intensity in the development of and recovery from delayed onset muscle soreness (DOMS). Using a cross-over study design, 15 healthy, male college students were tested on two occasions. The training stimulus consisted of an exhaustive series of eccentric muscle contractions of the elbow flexors at either 100% (high intensity) or 50% (low intensity) of the individual concentric one-repetition maximum. Blood samples were taken at baseline as well as 24, 48, 72 and 96 hours postexercise, and analyzed for creatine kinase, myoglobin, interleukin-6 and prostaglandin-2. Additionally, upper arm circumference (CIRC) and DOMS-related sensation of pain (PAIN) were measured. Following high intensity training, CIRC was significantly greater (P=0.007). Further, creatine kinase, myoglobin and interleukin-6 tended to be higher, although the main effect of the factor "intensity" just failed to reach significance (creatine kinase: P=0.056, myoglobin: P=0.064, interleukin-6: P=0.091). No differences were found for prostaglandin-2 (P=0.783) and PAIN (P=0.147). When performed at greater intensity, fatiguing eccentric resistance exercise of the elbow flexors leads to greater muscle swelling and, potentially, increases in serum markers reflecting lesions in the muscle's cellular membrane.

Coplanar surface barrier discharge ignited in water vapor—a selective source of OH radicals proved by (TA)LIF measurement

NASA Astrophysics Data System (ADS)

Procházka, V.; Tučeková, Z.; Dvořák, P.; Kováčik, D.; Slavíček, P.; Zahoranová, A.; Voráč, J.

2018-01-01

Coplanar dielectric barrier discharge (DBD) was ignited in pure water vapor at atmospheric pressure in order to generate highly oxidizing plasma with one specific type of reactive radicals. In order to prevent water condensation the used plasma reactor was heated to 120 {}\\circ C. The composition of the radical species in the discharge was studied by methods based on laser-induced fluorescence (LIF) and compared with analogous measurements realized in the same coplanar DBD ignited in air. Fast collisional processes and laser-surface interaction were taken into account during LIF data processing. It was found that coplanar DBD ignited in water vapor produces hydroxyl (OH) radicals with concentration in the order of 1020 m-3, which is 10× higher than the value measured in discharge in humid air (40% relative humidity at 21 {}\\circ C). The concentration of atomic hydrogen radicals in the DBD ignited in water vapor was below the detection limit, which proves that the generation of oxidizing plasma with dominance of one specific type of reactive radicals was achieved. The temporal evolution, spatial distribution, power dependence and rotational temperature of the OH radicals was determined in the DBD ignited in both water vapor and air.

Proceedings of the Federal Interagency Sediment Monitoring Instrument and Analysis Research Workshop, September 9-11, 2003, Flagstaff, Arizona

USGS Publications Warehouse

Gray, John R.

2005-01-01

The Advisory Committee on Water Information's Subcommittee on Sedimentation sponsored the Federal Interagency Sediment Monitoring Instrument and Analysis Research Workshop on September 9-11, 2003, at the U.S. Geological Survey Flagstaff Field Center, Arizona. The workshop brought together a diverse group representing most Federal agencies whose mission includes fluvial-sediment issues; academia; the private sector; and others with interests and expertise in fluvial-sediment monitoring ? suspended sediment, bedload, bed material, and bed topography ? and associated data-analysis techniques. The workshop emphasized technological and theoretical advances related to measurements of suspended sediment, bedload, bed material and bed topography, and data analyses. This workshop followed and expanded upon part of the 2002 Federal Interagency Workshop on Turbidity and Other Sediment Surrogates (http://water.usgs.gov/pubs/circ/2003/circ1250/), which initiated a process to provide national standards for measurement and use of turbidity and other sediment-surrogate data. This report provides a description of the salient attributes of the workshop and related information, major deliberations and findings, and principal recommendations. This information is available for evaluation by the Subcommittee on Sedimentation, which may opt to develop an action plan based on the recommendations that it endorses for consideration by the Advisory Committee on Water Information.

Rotationally inelastic collisions of He and Ar with NaK: Experiment and theory

NASA Astrophysics Data System (ADS)

Malenda, R. F.; Jones, J.; Faust, C.; Richter, K.; Wolfe, C. M.; Hickman, A. P.; Huennekens, J.; Talbi, D.; Gatti, F.

2012-06-01

We are investigating collisions of the ground (X^1&+circ;) and first excited (A^1&+circ;) electronic states of NaK using both experimental and theoretical methods. Potential surfaces for HeNaK (fixed NaK bond length) are used for coupled channel calculations of cross sections for rotational energy transfer and also for collisional transfer of orientation and alignment. Additional calculations use the MCTDH wavepacket method. The measurements of the A state collisions involve a pump--probe excitation scheme using polarization labeling and laser-induced fluorescence spectroscopy. The pump excites a particular ro-vibrational level (v,J) of the A state from the X state, and the probe laser is scanned over various transitions to the 3^1π state. In addition to strong direct transitions, weak satellite lines are observed that arise from collisionally-induced transitions from the (v,J) level to (v,J'=J+δJ). This method provides information about the cross sections for transfer of population and orientation for A state levels, and it can be adapted to transitions starting in the X state. For the A state we observe a strong δJ=even propensity for both He and Ar perturbers. Preliminary results for the X state do not show this propensity.

Integrated assessment in the Mediterranean: the CIRCE case studies

NASA Astrophysics Data System (ADS)

Goodess, C. M.; Agnew, M. D.; Hemming, D.; Giannakopoulos, C.

2012-04-01

The heterogeneous nature of the Mediterranean environment, combined with a wide diversity of economic, social and cultural identities, make this region particularly amenable to integrated research on climate change impacts, vulnerabilities, and adaptive response. Within the framework of the EU FP7 CIRCE project, eleven case-study locations were selected to reflect three generic environments (urban, rural and coastal), to quantify current and future climate change and to assess the potential consequences to human communities and ecosystems at the regional to local scale. The case studies (Athens, Beirut, Alexandria, Tuscany, Apulia, Tel Hadya, Judean Foothills, Gulf of Valencia, Gulf of Oran, Gulf of Gabes, West Nile Delta) were chosen to reflect the east-west and north-south contrasts across the Mediterranean, using common selection criteria. A rigorous common framework, referred to as the CIRCE Case studies Integrating Framework was developed to facilitate a structured and systematic basis for identifying and selecting indicators. Within this framework, climate dynamics is viewed as a key driver of changes in social and biogeophysical systems and is modulated by the inherent dynamics of these systems. The top-down, indicator-based approach was complemented by a bottom-up approach involving local and regional stakeholders. A participatory level of involvement was aimed for, with stakeholder dialogue on an informal basis throughout the project, culminating in a series of more formal regional stakeholder workshops. Identification and construction of physical and socio-economic indicators was the most challenging and time-consuming aspect of the case-study work. A detailed set of selection criteria was defined and the process of reviewing and refining indicators was iterative. Nonetheless, a number of data and methodological challenges were encountered. Despite these issues, indicator linkages diagrams provided a useful preparatory stage for structuring the integrated assessment for each case study. In the first and major assessment stage, impacts and vulnerability due to exposure to hazards associated with current and recent climate variability and change were explored using observed data. This then provided the context for considering future changes. The latter work was based on climate projections derived from the CIRCE global and regional climate model simulations which have the main novel characteristic of incorporating coupling between the Mediterranean Sea and atmosphere. Natural and human systems in all eleven case studies were found to be vulnerable to current climate variability and change as well as to social dynamics or drivers. The climate projections of increases in mean and extreme high temperature and decreases in precipitation are considered to be robust, although there is uncertainty with regards to the magnitude of change. They indicate that all case studies will experience continuing and increasing vulnerability to climate change in the absence of mitigation or adaptation. Projections for other extreme weather events, such as heavy precipitation and flooding, are highly uncertain, but any increase in such events would further increase vulnerability. At the same time, social dynamics and drivers such as population growth (at least in the short term and in the southern Mediterranean) are likely to further increase vulnerability.

HAT-P-57b: A Short-period Giant Planet Transiting a Bright Rapidly Rotating A8V Star Confirmed Via Doppler Tomography

NASA Astrophysics Data System (ADS)

Hartman, J. D.; Bakos, G. Á.; Buchhave, L. A.; Torres, G.; Latham, D. W.; Kovács, G.; Bhatti, W.; Csubry, Z.; de Val-Borro, M.; Penev, K.; Huang, C. X.; Béky, B.; Bieryla, A.; Quinn, S. N.; Howard, A. W.; Marcy, G. W.; Johnson, J. A.; Isaacson, H.; Fischer, D. A.; Noyes, R. W.; Falco, E.; Esquerdo, G. A.; Knox, R. P.; Hinz, P.; Lázár, J.; Papp, I.; Sári, P.

2015-12-01

We present the discovery of HAT-P-57b, a P = 2.4653 day transiting planet around a V=10.465+/- 0.029 mag, {T}{{eff}}=7500+/- 250 K main sequence A8V star with a projected rotation velocity of v{sin}i=102.1+/- 1.3 {km} {{{s}}}-1. We measure the radius of the planet to be R=1.413+/- 0.054 {R}{{J}} and, based on RV observations, place a 95% confidence upper limit on its mass of M\\lt 1.85 {M}{{J}}. Based on theoretical stellar evolution models, the host star has a mass and radius of 1.47+/- 0.12 {M}⊙ and 1.500+/- 0.050 {R}⊙ , respectively. Spectroscopic observations made with Keck-I/HIRES during a partial transit event show the Doppler shadow of HAT-P-57b moving across the average spectral line profile of HAT-P-57, confirming the object as a planetary system. We use these observations, together with analytic formulae that we derive for the line profile distortions, to determine the projected angle between the spin axis of HAT-P-57 and the orbital axis of HAT-P-57b. The data permit two possible solutions, with -16\\buildrel{\\circ}\\over{.} 7\\lt λ \\lt 3\\buildrel{\\circ}\\over{.} 3 or 27\\buildrel{\\circ}\\over{.} 6\\lt λ \\lt 57\\buildrel{\\circ}\\over{.} 4 at 95% confidence, and with relative probabilities for the two modes of 26% and 74%, respectively. Adaptive optics imaging with MMT/Clio2 reveals an object located 2\\buildrel{\\prime\\prime}\\over{.} 7 from HAT-P-57 consisting of two point sources separated in turn from each other by 0\\buildrel{\\prime\\prime}\\over{.} 22. The H- and {L}\\prime -band magnitudes of the companion stars are consistent with their being physically associated with HAT-P-57, in which case they are stars of mass 0.61+/- 0.10 {M}⊙ and 0.53+/- 0.08 {M}⊙ . HAT-P-57 is the most rapidly rotating star, and only the fourth main sequence A star, known to host a transiting planet. Based on observations obtained with the Hungarian-made Automated Telescope Network. Based in part on observations made with the Keck-I telescope at Mauna Kea Observatory, HI (Keck time awarded through NASA programs N029Hr, N108Hr, N154Hr and N130Hr and NOAO programs A289Hr, and A284Hr). Based in part on observations made with the Nordic Optical Telescope, operated on the island of La Palma jointly by Denmark, Finland, Iceland, Norway, and Sweden, in the Spanish Observatorio del Roque de los Muchachos of the Instituto de Astrofísica de Canarias. Based in part on observations obtained with the Tillinghast Reflector 1.5 m telescope and the 1.2 m telescope, both operated by the Smithsonian Astrophysical Observatory at the Fred Lawrence Whipple Observatory in Arizona.

Specific Cardiovascular Drugs Utilized in the Critically Ill

DTIC Science & Technology

1985-11-01

has been demonstrated to improve survival following hemorrhagic shock" " in rats and pigs. It is believed that ATP- MgCL treatment reverses a marked ...L.: Action of ghacagon on canine left ventricular performance and coronary hemodynamics. Circ. Shock, 11:45, 1963. 2. Allwood, M. J., Cobbold , A. F...and phenylephrine. Anesthesiology, 45;570-573, 1975. 101.- Mark , A. L., lizuka, T., Wendling, M. C., et al.: Responses of saphenous and mnesenteric

Arterial Pulse Pressure and Its Association With Reduced Stroke Volume During Progressive Central Hypovolemia

DTIC Science & Technology

2006-09-01

NM, Joyner MJ. Influence of increased central venous pressure on baroreflex control of sympathetic activity in humans. Am J Physiol Heart Circ Physiol...Arterial Pulse Pressure and Its Association With Reduced Stroke Volume During Progressive Central Hypovolemia Victor A. Convertino, PhD, William H...reduction of SV and change in MSNA during graded central hypovolemia in humans. Methods: After a 12-minute baseline data collection period, 13 men were

The Photorefractive Effect and its Application in Optical Computing

NASA Astrophysics Data System (ADS)

Li, Guo

This Ph.D dissertation includes the fanning effect and the temperature dependence of the diffraction efficiency and response time using different addressing configurations, and evaluation of the limitations and capacity of a holographic storage in BaTiO_3 crystals. Also, we designed a digital holographic optical disk and made an associate memory. The beam fanning effect in a BaTiO_3 crystal was investigated in detail. The effect depends on the crystal faces illuminated. In particular, for the +c face of illumination we found that the fanning effect strongly depends on angle of incidence, polarization and wavelength of the incident light, crystal temperature, laser beam profile, but only weakly depends on input laser power. In the case of the -c face and a-face illumination dependence of the ring angle on wavelength and input power was observed. We found that the intensity of the reflected beam in NDFWM, the intensity of self phase conjugate beam and the response time of the fanning effect decrease with temperature exponentially and there being a major change around 60 ^circ-80^circ C. A random bistability and oscillation of the SPPC occur around 80^circC. We also present a theoretical analysis for the dependence of the photorefractive effect on temperature. We experimentally evaluate the capacity and limitation of optical storage in BaTiO_3 crystals using self-pumped phase conjugation (SPPC) and two-wave mixing. The storage capacity is different with different face of illumination, polarization, beam profile and input power. We demonstrate that using two wave mixing, three dimensional volume holograms can be stored. The information -bearing beam diameter for storage and recall can be about 0.25mm or less. By these techniques we demonstrate that at least 10^5 holograms can be stored in a 3.5 inch photorefractive disk. We evaluate an optimal optical architecture for exploiting the photorefractive effect for digital holographic disk storage. An image with many pixels was used for this experimental evaluation. By using a raytracing program, we traced a beam with a Gaussian profile through our optical system. We also estimated the Seidel aberration of our optical system in order to determine the quality of the stored digital data.

Electrical Characterization of Thin Film Cadmium Telluride Electrodeposited from Tri-N Telluride

NASA Astrophysics Data System (ADS)

von Windheim, Jesko A.

The electrical transport properties of CdTe electrodeposited from tri-n-butylphosphine telluride have been studied by resistivity and Hall effect measurements. Methods have been developed to reproducibly remove large area samples from their conducting substrates, and these samples were prepared for temperature dependent Hall measurements and resistivity measurements. Apparatus was designed and built to routinely measure Hall voltages as low as 250 muV for source impedances up to 10 ^{12} Omega. The central aspect of the measurement system was a low cost, differential electrometer amplifier designed around the AD549L monolithic electrometer operational amplifier. Temperature control was achieved via a Eurotherm 808 temperature controller, and a cooled stream of nitrogen gas. With this system, temperature could be maintained within +/- 0.5^circC at set points between -40^circC and +40^circC. Data collection, temperature ramping, and power to the magnet were all computer controlled, and resistivity measurements were fully automated. As-annealed electrodeposited CdTe was found to be consistently p-type, with resistivity values typically 10^6- 10^{7 } Omega-cm. Various donor and acceptor dopants have been incorporated into polycrystalline CdTe films by three methods: electrochemical codeposition, electromigration and vapour techniques. The dopants were Cd, Te, Cu, Ag, In, and O_2. The activity of the dopant was dependent on the method that was used for incorporation. Oxygen was found to only have a significant effect when it was incorporated in situ, during deposition. For Cd and Te, on the other hand, little effect was seen when their concentration was varied in situ. However, hole concentration increased substantially when Te was incorporated by diffusion, and a p to n conversion was observed when Cd was incorporated by diffusion. The carrier concentration of p-type CdTe could be systematically increased by increasing the current density for the electromigration of copper. The decreasing carrier concentration was accompanied by a decrease in resistivity and a decrease in mobility. The effect of dopant density on the resistivity of the polycrystalline cadmium telluride films, deposited from tri-n-butylphosphine telluride, can consistently be described by a grain boundary model. In this model charging of grain boundary states results in a barrier and can affect the carrier density. According to the model, dopants accumulated at grain boundaries do not generate carriers and do not affect the density of interface states.

Relaxation diélectrique de solutions aqueuses d'éthylène glycol aux micro-ondes

NASA Astrophysics Data System (ADS)

Vicq, G.; Delbos, G.; Forniés Marquina, J. M.; Lamkaouchi, K.

1999-09-01

The study of dielectric properties of aqueous solutions of ethylene glycol in the frequency range 10 MHz - 20 GHz is reported as a function of water concentration at 20 circC. Some complex permittivity measurements were carried out using a precise reflectrometric method at 1.20, 3.26 and 9.45 GHz and some others using HP 8510 B network analyser from 45 MHz to 20 GHz and measurements by time domain reflectometry (T.D.R.). The dielectric relaxation analysis shows two domains of “Debye" dispersion for pure ethylene glycol and his aqueous solutions. Using a spectral decomposition, the static and high frequency dielectric constant and the relaxation time have been determined. The dielectric behaviour is interpreted by using the concept of Schallamach, concerning the mixtures of associated-associated liquids. Les auteurs présentent des séries de résultats de mesures en hyperfréquences concernant les permittivités diélectriques de l'éthylène-glycol et de ses solutions aqueuses à 20 circC, pour diverses concentrations, entre 100 MHz et 20 GHz. Ils ont utilisé trois techniques différentes : des mesures précises à trois fréquences fixes parfaitement stabilisées en guides d'ondes 1,20 ; 3,26 et 9,45 GHz par une méthode réflectométrique ; des mesures utilisant l'analyseur de réseau vectoriel HP 8510 B fonctionnant entre 45 MHz et 20 GHz ; et des mesures par réflectométrie en domaine de temps (R.D.T.). Ils montrent que l'analyse de la relaxation peut être représentée par la superposition de deux domaines de dispersion de type “Debye" pour l'éthylène glycol et ses solutions aqueuses. Par décomposition spectrales, ils déduisent la permittivité statique, les temps de relaxation et la permittivité à fréquence infinie à 20 circC? Ils proposent que ces mélanges soient de type associé-associé suivant le concept de Schallamach, qui montre que pour des mélanges de ce type, il existe des relaxations d'agrégats contenant les deux types de molécules plutôt que des relaxations de molécules individuelles.

The Role of Residual Casting Solvent in Determining the Lithographic and Dissolution Behavior of Poly(methyl Methacrylate), a Positive Electron Beam Resist.

NASA Astrophysics Data System (ADS)

Criss, Robert Randolph, Jr.

The effect of the pre-exposure bake and the choice of casting solvent on the sensitivity and contrast of PMMA has been documented to an extent not previously reported in the literature. PMMA films were spin cast onto clean silicon substrates from chlorobenzene and tri-chloroethylene solutions. The temperature of the pre-bake was varied over the range of 59^circ to 170^circC using a convection oven with pre-bake times ranging from 30 to 90 minutes. At the end of the designated bake time, the films were removed from the oven and allowed to cool in a temperature and humidity controlled environment. They were promptly exposed to a 15 KeV electron beam, then developed, with mild agitation, in a 1:1 mixture of MIBK and IPA at 22.5^ circC. Film thickness profiles were determined with an alpha-step profilometer. Films baked at temperatures below T_{rm glass} (the temperature which marks the onset of long-range, coordinated molecular motion), exhibited improved sensitivity and poorer contrast when compared to those baked above T_{rm glass }. Unique to this work is the finding that the lithographic performance depends on the choice of casting solvent, even at pre-bake temperatures significantly above T_{rm glass}. The relative concentrations of the casting solvents remaining in the baked films was determined from UV absorption spectra. The dissolution rates of exposed films were also measured and compared to the fragmented molecular weight model of development. Energy depositions were calculated from the empirical model of Everhart and Hoff. Cross-correlation of these results indicate that the pre-bake temperature more strongly correlates with the observed improvement in sensitivity than the presence of residual casting solvent. Residual casting solvent changes the density of the film, thus changing the energy deposition and dissolution behavior. Calculations based on the aforementioned models indicate that the observed lithographic and dissolution behavior can not be accounted for by this change in density. Arguments are presented to support the conclusion that the observed behavior is associated with film morphology. Comparison of results from films cast from TCE and chlorobenzene and baked above T_{rm glass} further support this conclusion.

Variable Dynamics in the Inner Disk of HD 135344B Revealed with Multi-epoch Scattered Light Imaging

NASA Astrophysics Data System (ADS)

Stolker, Tomas; Sitko, Mike; Lazareff, Bernard; Benisty, Myriam; Dominik, Carsten; Waters, Rens; Min, Michiel; Perez, Sebastian; Milli, Julien; Garufi, Antonio; de Boer, Jozua; Ginski, Christian; Kraus, Stefan; Berger, Jean-Philippe; Avenhaus, Henning

2017-11-01

We present multi-epoch Very Large Telescope/Spectro-Polarimetric High-contrast Exoplanet REsearch (VLT/SPHERE) observations of the protoplanetary disk around HD 135344B (SAO 206462). The J-band scattered light imagery reveal, with high spatial resolution (˜41 mas, 6.4 au), the disk surface beyond ˜20 au. Temporal variations are identified in the azimuthal brightness distributions of all epochs, presumably related to the asymmetrically shading dust distribution in the inner disk. These shadows manifest themselves as narrow lanes, cast by localized density enhancements, and broader features which possibly trace the larger scale dynamics of the inner disk. We acquired visible and near-infrared photometry which shows variations up to 10% in the JHK bands, possibly correlated with the presence of the shadows. Analysis of archival Very Large Telescope Interferometer/Precision Integrated-Optics Near-infrared Imaging ExpeRiment (VLTI/PIONIER) H-band visibilities constrain the orientation of the inner disk to I=18\\buildrel{\\circ}\\over{.} {2}-4.1+3.4 and {PA}=57\\buildrel{\\circ}\\over{.} 3+/- 5\\buildrel{\\circ}\\over{.} 7, consistent with an alignment with the outer disk or a minor disk warp of several degrees. The latter scenario could explain the broad, quasi-stationary shadowing in north-northwest direction in case the inclination of the outer disk is slightly larger. The correlation between the shadowing and the near-infrared excess is quantified with a grid of radiative transfer models. The variability of the scattered light contrast requires extended variations in the inner disk atmosphere (H/r≲ 0.2). Possible mechanisms that may cause asymmetric variations in the optical depth ({{Δ }}τ ≲ 1) through the atmosphere of the inner disk include turbulent fluctuations, planetesimal collisions, or a dusty disk wind, possibly enhanced by a minor disk warp. A fine temporal sampling is required to follow day-to-day changes of the shadow patterns which may be a face-on variant of the UX Orionis phenomenon. Based on observations collected at the European Organisation for Astronomical Research in the Southern Hemisphere under ESO programmes 087.C-0702(A,B), 087.C-0458(B,C), 087.C-0703(B), 088.C-0670(B), 088.D-0185(A), 088.C-0763(D), 089.C-0211(A), 091.C-0570(A), 095.C-0273(A), 097.C-0885(A), 097.C-0702(A), and 297.C-5023(A).

Magneto-optical Kerr rotation and color in ultrathin lossy dielectric

NASA Astrophysics Data System (ADS)

Zhang, Jing; Wang, Hai; Qu, Xin; Zhou, Yun song; Li, Li na

2017-05-01

Ultra-thin optical coating comprising nanometer-thick silicon absorbing films on iron substrates can display strong optical interference effects. A resonance peak of ∼1.6^\\circ longitudinal Kerr rotation with the silicon thickness of ∼47 \\text{nm} was found at the wavelength of 660 nm. The optical properties of silicon thin films were well controlled by the sputtering power. Non-iridescence color exhibition and Kerr rotation enhancement can be manipulated and encoded individually.

S-Nitrosylation and the Development of Pulmonary Hypertension

DTIC Science & Technology

2009-02-14

GSNO-R associates with eNOS; overexpression of GSNO-R alters eNOS phosphorylation at serine 1177, a residue implicated in eNOS activation; castration ...prevents the development of PAH in response to unregulated delivery of SNOs; and GSNO-R activity in castrated mice is equal to that of female mice...hypertension in normal cattle . Circ Res 10: 172-177, 1962. 10. Vogel JHK, weaver WF, Rose RL, Blount SG Jr. Grover RG. Pulmonary hypertension on

Evaluation of (1-Sarcosine, 8-Isoleucine) Angiotensin II as a Therapeutic Agent for OLEIC Acid-Induced Pulmonary Edema

DTIC Science & Technology

1986-02-01

during continuous intravenous infusion of the drug. No for angiotensinogenic hypertension . Clinical trials indi- changes were detected in systemic or...results suggest that (1-Sar, 8-Ile) A II may have of synthetic angiotensin 11 analogue. Jpn Circ J 38:997.1003, some desirable effects on the systemic ...Hata T, sive Kumahara Y: Changes of blood pressure, plasma renin activity pressure and peripheral resistance without changing and plasma aldosterone

Binding ability of impromidine, a potent H2 agonist of histamine

NASA Astrophysics Data System (ADS)

Anouar, A.; Lhadi, E.; Decock, P.; Kozlowskyinst4, H.

1999-09-01

Impromidine (fig.1) is a potent and selective histamine H2 receptor agonist and its structure comprises a strongly basic guanidine group containing two different imidazole-containing side chains. The present work deals with the study of coordination equilibria between impromidine and Cu(II) and Ni(II) in aqueous solution at 25 circC. Potentiometric, UV-Visible and EPR studies on Cu(II) complexes with impromidine have shown that this anti-ulcerogenic drug is a very potent chelating agent. This drug is found to be a very effective ligand for Ni(II) ions also. The effective coordination of impromidine to metal ions may have significant biological implications. L'impromidine est un agoniste H2 de l'histamine, sa structure possède un groupement guanidinique de forte basicité et dont l'environne ment des deux groupements imidazoliques est différent. Le présent travail consiste en l'étude de la coordination de l'impromidine avec le Cu(II) et le Ni(II) en milieu aqueux à 25 circC. La potentiométrie, LíUV-Visible et la RPE montrent que le cuivre se coordine très fortement avec l'impromidine. Nous avons trouvé que ce médicament se coordine aussi fortement avec le nickel(II). La coordination de l'impromidine avec les métaux pourrait avoir des applications importantes en médecine.

Dewetting of Thin Polymer Films

NASA Astrophysics Data System (ADS)

Dixit, P. S.; Sorensen, J. L.; Kent, M.; Jeon, H. S.

2001-03-01

DEWETTING OF THIN POLYMER FILMS P. S. Dixit,(1) J. L. Sorensen,(2) M. Kent,(2) H. S. Jeon*(1) (1) Department of Petroleum and Chemical Engineering, New Mexico Institute of Mining and Technology, 801 Leroy Place, Socorro, NM 87801, jeon@nmt.edu (2) Department 1832, Sandia National Laboratories, Albuquerque, NM. Dewetting of thin polymer films is of technological importance for a variety of applications such as protective coatings, dielectric layers, and adhesives. Stable and smooth films are required for the above applications. Above the glass transition temperature (Tg) the instability of polymer thin films on a nonwettable substrate can be occurred. The dewetting mechanism and structure of polypropylene (Tg = -20 ^circC) and polystyrene (Tg = 100 ^circC) thin films is investigated as a function of film thickness (25 Åh < 250 Åand quenching temperature. Contact angle measurements are used in conjunction with optical microscope to check the surface homogeneity of the films. Uniform thin films are prepared by spin casting the polymer solutions onto silicon substrates with different contact angles. We found that the stable and unstable regions of the thin films as a function of the film thickness and quenching temperature, and then constructed a stability diagram for the dewetting of thin polymer films. We also found that the dewetting patterns of the thin films are affected substantially by the changes of film thickness and quenching temperature.

Towards fractional-order capacitors with broad tunable constant phase angles: multi-walled carbon nanotube-polymer composite as a case study

NASA Astrophysics Data System (ADS)

Agambayev, Agamyrat; Rajab, Karam H.; Hassan, Ali H.; Farhat, Mohamed; Bagci, Hakan; Salama, Khaled N.

2018-02-01

In this study, multi-walled carbon nanotube (MWCNT) filled polyevinelidenefluoride-trifluoroethylene-chlorofluoroethylene composites are used to realize fractional-order capacitors (FOCs). A solution-mixing and drop-casting approach is used to fabricate the composite. Due to the high aspect ratio of MWCNTs, percolation regime starts at a small weight percentage (wt%), 1.00%.The distributed MWCNTs inside the polymer act as an electrical network of micro-capacitors and micro-resistors, which, in effect, behaves like a FOC. The resulting FOCs’ constant phase angle (CPA) can be tuned from -65{\\hspace{0pt}}^\\circ to -7{\\hspace{0pt}}^\\circ by changing the wt% of the MWCNTs. This is the largest dynamic range reported so far at the frequency range from 150 kHz to 2 MHz for an FOC. Furthermore, the CPA and pseudo-capacitance are shown to be practically stable (with less than 1% variation) when the applied voltage is, changed between 500 µV and 5 V. For a fixed value of CPA, the pseudo-capacitance can be tuned by changing the thickness of the composite, which can be done in a straightforward manner via the solution-mixing and drop-casting fabrication approach. Finally, it is shown that the frequency of a Hartley oscillator built using an FOC is almost 15 times higher than that of a Hartley oscillator built using a conventional capacitor.

Addendum: Measurement of charged particle yields from PMMA irradiated by a 220 MeV/u 12C beam

NASA Astrophysics Data System (ADS)

Mattei, I.; Battistoni, G.; Collini, F.; De Lucia, E.; Durante, M.; Fiore, S.; La Tessa, C.; Mancini-Terracciano, C.; Marafini, M.; Mirabelli, R.; Muraro, S.; Paramatti, R.; Piersanti, L.; Rucinski, A.; Russomando, A.; Sarti, A.; Schuy, C.; Sciubba, A.; Solfaroli Camillocci, E.; Toppi, M.; Traini, G.; Valle, S. M.; Vanstalle, M.; Patera, V.

2017-11-01

In this paper we report the re-analysis of the data published in Piersanti et al (2014 Phys. Med. Biol. 59 1857) documenting the charged secondary particles production induced by the interaction of a 220 MeV/u 12C ion beam impinging on a polymethyl methacrylate (PMMA) target, measured in 2012 at the GSI facility in Darmstadt (Germany). This re-analysis takes into account the inhomogeneous light response of the LYSO crystal in the experimental setup measured in a subsequent experiment (2014) performed in the Heidelberg Ion-Beam Therapy Center. A better description of the detector and re-calculation of the geometrical efficiencies have been implemented as well, based on an improved approach that accounts also for the energy dependence of the emission spectrum. The new analysis has little effect on the total secondary charged flux, but has an impact on the production yield and emission velocity distributions of the different particle species (protons, deuterons and tritons) at different angles with respect to the beam direction (60^\\circ and 90^\\circ ). All these observables indeed depend on the particle identification algorithms and hence on the LYSO detector energy response. The results of the data re-analysis presented here are intended to supersede and replace the results published in Piersanti et al (2014 Phys. Med. Biol. 59 1857).

Discovery of New Coronal Lines at 2.843 and 2.853 μm

NASA Astrophysics Data System (ADS)

Samra, Jenna E.; Judge, Philip G.; DeLuca, Edward E.; Hannigan, James W.

2018-04-01

Two new emission features were observed during the 2017 August 21 total solar eclipse by a novel spectrometer, the Airborne Infrared Spectrometer (AIR-Spec), flown at 14.3 km altitude aboard the NCAR Gulfstream-V aircraft. We derive wavelengths in air of 2.8427 ± 0.00009 μm and 2.8529 ± 0.00008 μm. One of these lines belongs to the 3{{{p}}}53{{d}}{}3{{{F}}}3^\\circ \\to 3{{{p}}}53{{d}}{}3{{{F}}}4^\\circ transition in Ar-like Fe IX. This appears to be the first detection of this transition from any source. Minimization of residual wavelength differences using both measured wavelengths, together with National Institute of Standards and Technology (NIST) extreme ultraviolet wavelengths, does not clearly favor assignment to Fe IX. However, the shorter wavelength line appears more consistent with other observed features formed at similar temperatures to Fe IX. The transition occurs between two levels within the excited 3{{{p}}}53{{d}} configuration, 429,000 cm‑1 above the ground level. The line is therefore absent in photo-ionized coronal-line astrophysical sources such as the Circinus Galaxy. Data from a Fourier transform interferometer (FTIR) deployed from Wyoming show that both lines are significantly attenuated by telluric H2O, even at dry sites. We have been unable to identify the longer wavelength transition.

Extracorporeal Gas Exchange and Spontaneous Breathing for the Treatment of Acute Respiratory Distress Syndrome: An Alternative to Mechanical Ventilation?

DTIC Science & Technology

2014-03-01

Milano, Milan , Italy. 3National Research Council, National Academies, Washington, DC. 4School of Medicine, Università degli Studi di Milano, Milan ...Policlinico di Milano, Milan , Italy. This work was performed at the Comprehensive Intensive Care Research Task Area, US Army Institute of Surgical Research... Schultz HD, et al: Stimulation of pulmo- nary vagal afferent C-fibers by lung edema in dogs. Circ Res 1986; 58:512–522 45. Schuster DP: ARDS: Clinical

Constitutional Law--Denial of Equal Protection to Patient as also Constituting Denial of Equal Protection to Physician, Wulff v. Singleton, 508 F. 2d 1211 (8th Circ.), cert. granted, 420 U.S. 1041 (1975)

ERIC Educational Resources Information Center

Burris, Christopher E.

1975-01-01

Wulff v. Singleton represents the first case in which a physician has been granted standing when his sole injury arose from the possibility that he might not be paid for performing abortions. It also represents the first time a physician, as opposed to his patient, has been held to be denied equal protection. The court's rationale is examined.…

Speckle Interferometry at Soar in 2010 and 2011: Measures, Orbits, and Rectilinear Fits

DTIC Science & Technology

2012-02-01

Astron. Nachr., 331, 304 18 The Astronomical Journal, 143:42 (19pp), 2012 February Hartkopf, Tokovinin, & Mason Cvetkovic, Z., & Novakovic , B. 2006...Serb. AJ, 173, 73 Cvetkovic, Z., Novakovic , B., & Todorovic, N. 2008, New Astron., 13, 125 Davis, J., Mendez, A., Seneta, E. B., et al. 2005, MNRAS...J., et al. 2004, A&A, 418, 989 Novakovic , B. 2006, Inf. Circ., 158, 1 Novakovic , B. 2007, Chin. J. Astron. Astrophys., 7, 415 Olevic, D. 2002a, Inf

AGOR 28: SIO Shipyard Representative Bi-Weekly Progress Report

DTIC Science & Technology

2013-07-18

ADA DBL)/ADA t/s  Lkr Md-2 (CG) 6  Sally Ride Gray Water Tank – Tank pressurized and boundaries inspected for leaks with ABS in...SPARES (VRS) LISTINGS, STATISTICS, AND LOCATIONS (DI-051 (VRS) for Pl 72428-03 Gray Water Discharge Pump)(R/ASR) 570/0 AGOR27 A051 STD Report...VENDOR RECOMMENDED SPARES (VRS) LISTINGS, STATISTICS, AND LOCATIONS ( DI-051 (VRS) for PL 72428-08 Hot Water Circ Pump)(R/ASR) 574/0 AGOR27 A055 TM

Prevention of Acute Mountain Sickness by Dexamethasone,

DTIC Science & Technology

1983-07-27

Circ Res 1966; 19:274-82. 15. Lassen NA, Harper AM. High- altitude cerebral oedema . Lancet 1975; 2:1154. 16. Houston CS, Dickinson 3. Cerebral form of...individuals rapidly ascend to hign altitude . It is postulated that cerebral edema causes the symptoms of AMS. Since dexamethasone is useful in treating some...to a simulated altitude of 4570 m (15,000 ft) on two occasions. On S one occasion, they received dexamethasone (4 mg every 6 h) for 36 h before and

Can U.S.-Led Efforts Reduce Piracy in the Malacca and Singapore Straits?

DTIC Science & Technology

2004-02-10

International Chamber of Commerce and sponsor for the Piracy Reporting Centre (IMB-PRC) in Kuala Lumpur, defines piracy as “the act of boarding any...Report - 2001, IMO Circular MSC.4/Circ.16 (London: 31 March 2002), 17-18. 25 International Chamber of Commerce , “Excerpt from the ICC Piracy...Report, 2001… Trends,” 2002, <http://www.iccwbo.org/home/news_archives /2002/excerpt_ trends.asp>, [01 December 2004]. 26 International Chamber of Commerce , “ICC

New Stethoscope With Extensible Diaphragm.

PubMed

Takashina, Tsunekazu; Shimizu, Masashi; Muratake, Torakazu; Mayuzumi, Syuichi

2016-08-25

This study compared the diagnostic efficacy of the common suspended diaphragm stethoscope (SDS) with a new extensible diaphragm stethoscope (EDS) for low-frequency heart sounds. The EDS was developed by using an ethylene propylene diene monomer diaphragm. The results showed that the EDS enhanced both the volume and quality of low-frequency heart sounds, and improved the ability of examiners to auscultate such heart sounds. Based on the results of the sound analysis, the EDS is more efficient than the SDS. (Circ J 2016; 80: 2047-2049).

Chemical Mapping of the Milky Way with The Canada-France Imaging Survey: A Non-parametric Metallicity-Distance Decomposition of the Galaxy

NASA Astrophysics Data System (ADS)

Ibata, Rodrigo A.; McConnachie, Alan; Cuillandre, Jean-Charles; Fantin, Nicholas; Haywood, Misha; Martin, Nicolas F.; Bergeron, Pierre; Beckmann, Volker; Bernard, Edouard; Bonifacio, Piercarlo; Caffau, Elisabetta; Carlberg, Raymond; Côté, Patrick; Cabanac, Rémi; Chapman, Scott; Duc, Pierre-Alain; Durret, Florence; Famaey, Benoît; Fabbro, Sébastien; Gwyn, Stephen; Hammer, Francois; Hill, Vanessa; Hudson, Michael J.; Lançon, Ariane; Lewis, Geraint; Malhan, Khyati; di Matteo, Paola; McCracken, Henry; Mei, Simona; Mellier, Yannick; Navarro, Julio; Pires, Sandrine; Pritchet, Chris; Reylé, Celine; Richer, Harvey; Robin, Annie C.; Sánchez-Janssen, Rubén; Sawicki, Marcin; Scott, Douglas; Scottez, Vivien; Spekkens, Kristine; Starkenburg, Else; Thomas, Guillaume; Venn, Kim

2017-10-01

We present the chemical distribution of the Milky Way, based on 2900 {\\deg }2 of u-band photometry taken as part of the Canada-France Imaging Survey. When complete, this survey will cover 10,000 {\\deg }2 of the northern sky. By combing the CFHT u-band photometry together with Sloan Digital Sky Survey and Pan-STARRS g,r, and I, we demonstrate that we are able to reliably measure the metallicities of individual stars to ˜0.2 dex, and hence additionally obtain good photometric distance estimates. This survey thus permits the measurement of metallicities and distances of the dominant main-sequence (MS) population out to approximately 30 {kpc}, and provides a much higher number of stars at large extraplanar distances than have been available from previous surveys. We develop a non-parametric distance-metallicity decomposition algorithm and apply it to the sky at 30^\\circ < | b| < 70^\\circ and to the North Galactic Cap. We find that the metallicity-distance distribution is well-represented by three populations whose metallicity distributions do not vary significantly with vertical height above the disk. As traced in MS stars, the stellar halo component shows a vertical density profile that is close to exponential, with a scale height of around 3 {kpc}. This may indicate that the inner halo was formed partly from disk stars ejected in an ancient minor merger.

Self-reported snoring frequency and incidence of cardiovascular disease: the Circulatory Risk in Communities Study (CIRCS).

PubMed

Nagayoshi, Mako; Tanigawa, Takeshi; Yamagishi, Kazumasa; Sakurai, Susumu; Kitamura, Akihiko; Kiyama, Masahiko; Okada, Takeo; Maeda, Kenji; Ohira, Tetsuya; Imano, Hironori; Sato, Shinichi; Iso, Hiroyasu

2012-01-01

Although associations between snoring and cardiovascular disease have been reported in several prospective studies, there is limited evidence from Asian populations. The objective of this study was to determine if there is an association between self-reported snoring frequency and the incidence of cardiovascular disease in Japanese. The subjects were 2350 men and 4163 women aged 40 to 69 years who lived in 3 communities in Japan. All subjects were participants in the Circulatory Risk in Communities Study (CIRCS) and were followed for 6 years. Incidence of cardiovascular disease during the follow-up period comprised events of myocardial infarction, angina pectoris, sudden cardiac death and stroke. During the 6-year follow-up period, 97 participants (56 men and 41 women) had cardiovascular events. After adjustment for potential confounding factors, self-reported snoring frequency was associated with an increased risk of cardiovascular events among women but not men. The hazard ratios (95% CI) for cardiovascular events were 0.9 (0.4-2.0) for sometimes snoring and 2.5 (1.0-6.1) for everyday snoring in women and 0.7 (0.3-1.3) and 1.0 (0.5-2.1), respectively, in men. Further adjustment for body mass index attenuated the association in women; the respective hazard ratios for cardiovascular events were 0.9 (0.4-1.9) and 2.1 (0.9-5.4). Self-reported habitual snoring was associated with increased risk of cardiovascular events among Japanese women. Overweight may partly mediate this association.

Atomic Data on Inelastic Processes in Calcium–Hydrogen Collisions

NASA Astrophysics Data System (ADS)

Belyaev, A. K.; Voronov, Y. V.; Yakovleva, S. A.; Mitrushchenkov, A.; Guitou, M.; Feautrier, N.

2017-12-01

Inelastic cross sections and rate coefficients in Ca + H and Ca+ + H‑ collisions for all transitions between the 17 lowest covalent states plus one ionic molecular state are calculated based on the most recent ab initio adiabatic potentials for the 11 lowest molecular states, as well as on the model asymptotic potentials for higher-lying states, including the ground ionic molecular state. Nuclear dynamics is treated by the probability-current method and the multichannel formulas for the collision energy range 0.01–100 eV. The rates are computed for mutual neutralization, ion-pair formation, and (de-)excitation processes for the temperature range T = 1000–10,000 K. The calculations single out the partial processes with large and moderate rate coefficients. The largest rates correspond to the mutual neutralization into the {Ca}(4s5s{}3S), {Ca}(4s5p{}3P^\\circ ), {Ca}(4s5s{}1S), and {Ca}(4s5p{}{1}P^\\circ ) final states; at T = 6000 K the largest value is 5.50 × 10‑8 cm3 s‑1 for {Ca}(4s5s{}3S). Among the (de-)excitation processes, the largest rate coefficient corresponds to the {Ca}(4s5s{}1S)\\to {Ca}(4s5s{}3S) transition; at T = 6000 K, the largest rate has the value of 8.46 × 10‑9 cm3 s‑1.

Optical Sky Brightness and Transparency during the Winter Season at Dome A Antarctica from the Gattini-All-Sky Camera

NASA Astrophysics Data System (ADS)

Yang, Yi; Moore, Anna M.; Krisciunas, Kevin; Wang, Lifan; Ashley, Michael C. B.; Fu, Jianning; Brown, Peter J.; Cui, Xiangqun; Feng, Long-Long; Gong, Xuefei; Hu, Zhongwen; Lawrence, Jon S.; Luong-Van, Daniel; Riddle, Reed L.; Shang, Zhaohui; Sims, Geoff; Storey, John W. V.; Suntzeff, Nicholas B.; Tothill, Nick; Travouillon, Tony; Yang, Huigen; Yang, Ji; Zhou, Xu; Zhu, Zhenxi

2017-07-01

The summit of the Antarctic plateau, Dome A, is proving to be an excellent site for optical, near-infrared, and terahertz astronomical observations. Gattini is a wide-field camera installed on the PLATO instrument module as part of the Chinese-led traverse to Dome A in 2009 January. We present here the measurements of sky brightness with the Gattini ultra-large field of view (90^\\circ × 90^\\circ ) in the photometric B-, V-, and R-bands; cloud cover statistics measured during the 2009 winter season; and an estimate of the sky transparency. A cumulative probability distribution indicates that the darkest 10% of the nights at Dome A have sky brightness of S B = 22.98, S V = 21.86, and S R = 21.68 mag arcsec-2. These values were obtained during the year 2009 with minimum aurora, and they are comparable to the faintest sky brightness at Maunakea and the best sites of northern Chile. Since every filter includes strong auroral lines that effectively contaminate the sky brightness measurements, for instruments working around the auroral lines, either with custom filters or with high spectral resolution instruments, these values could be easily obtained on a more routine basis. In addition, we present example light curves for bright targets to emphasize the unprecedented observational window function available from this ground-based site. These light curves will be published in a future paper.

Glide Dislocations Dissociation in Inversion Domain Boundaries of Plastically Deformed Aluminium Nitride

NASA Astrophysics Data System (ADS)

Feregotto, Virginia; Michel, Jean-Pierre

1996-09-01

A ten per cent plastic deformation of polycrystalline aluminium nitride, at a temperature ranging from 1500 to 1650 ^{circ}C creates a new kind of intragranular defect. Observed by transmission electron microscopy, the look like torsion subboundaries created by dislocations with 1/3<~ngle11bar{2}0rangle Burgers vectors and so nodes are dissociated into Shockley partials. They are located in the basal plane. In fact, these defects appear only in the plane areas of grown-in defects, the inversion domain boundaries. The formation of these faulted networks is interpreted as being the ultimate stage of the interactions between inversion domain boundaries and glide dislocations. Une déformation plastique de 10 % de nitrure d'aluminium polycristallin, entre 1500 et 1650 ^{circ}C introduit un nouveau type de défauts intragranulaires. Au microscope électronique par transmission, ils apparaissent comme des sous-joints de torsion créés par des dislocations de vecteurs de Burgers 1/3<~ngle11bar{2}0rangle dont les nœuds triples sont dissociés en partielles de Shockley ; ils sont situés dans le plan de base. En fait, ces défauts ne se produisent que sur les parties planes de défauts originels, les parois de domaines d'inversion. La formation de ces réseaux fautés est analysée comme l'ultime stade des interactions entre parois de domaines d'inversion et dislocations de glissement.

Circular RNA profiling reveals that circular RNAs from ANXA2 can be used as new biomarkers for multiple sclerosis.

PubMed

Iparraguirre, Leire; Muñoz-Culla, Maider; Prada-Luengo, Iñigo; Castillo-Triviño, Tamara; Olascoaga, Javier; Otaegui, David

2017-09-15

Multiple sclerosis is an autoimmune disease, with higher prevalence in women, in whom the immune system is dysregulated. This dysregulation has been shown to correlate with changes in transcriptome expression as well as in gene-expression regulators, such as non-coding RNAs (e.g. microRNAs). Indeed, some of these have been suggested as biomarkers for multiple sclerosis even though few biomarkers have reached the clinical practice. Recently, a novel family of non-coding RNAs, circular RNAs, has emerged as a new player in the complex network of gene-expression regulation. MicroRNA regulation function through a 'sponge system' and a RNA splicing regulation function have been proposed for the circular RNAs. This regulating role together with their high stability in biofluids makes them seemingly good candidates as biomarkers. Given the dysregulation of both protein-coding and non-coding transcriptome that have been reported in multiple sclerosis patients, we hypothesised that circular RNA expression may also be altered. Therefore, we carried out expression profiling of 13.617 circular RNAs in peripheral blood leucocytes from multiple sclerosis patients and healthy controls finding 406 differentially expressed (P-value < 0.05, Fold change > 1.5) and demonstrate after validation that, circ_0005402 and circ_0035560 are underexpressed in multiple sclerosis patients and could be used as biomarkers of the disease. © The Author 2017. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

CCD Camera Observations

NASA Astrophysics Data System (ADS)

Buchheim, Bob; Argyle, R. W.

One night late in 1918, astronomer William Milburn, observing the region of Cassiopeia from Reverend T.H.E.C. Espin's observatory in Tow Law (England), discovered a hitherto unrecorded double star (Wright 1993). He reported it to Rev. Espin, who measured the pair using his 24-in. reflector: the fainter star was 6.0 arcsec from the primary, at position angle 162.4 ^{circ } (i.e. the fainter star was south-by-southeast from the primary) (Espin 1919). Some time later, it was recognized that the astrograph of the Vatican Observatory had taken an image of the same star-field a dozen years earlier, in late 1906. At that earlier epoch, the fainter star had been separated from the brighter one by only 4.8 arcsec, at position angle 186.2 ^{circ } (i.e. almost due south). Were these stars a binary pair, or were they just two unrelated stars sailing past each other? Some additional measurements might have begun to answer this question. If the secondary star was following a curved path, that would be a clue of orbital motion; if it followed a straight-line path, that would be a clue that these are just two stars passing in the night. Unfortunately, nobody took the trouble to re-examine this pair for almost a century, until the 2MASS astrometric/photometric survey recorded it in late 1998. After almost another decade, this amateur astronomer took some CCD images of the field in 2007, and added another data point on the star's trajectory, as shown in Fig. 15.1.

Application of Near Infrared Spectroscopy, Intravascular Ultrasound and the Coronary Calcium Score to Predict Adverse Coronary Events

DTIC Science & Technology

2014-10-01

Kenneth&&Moore& 6/12/14 Smith RCA& stent ,&LAD&small&with&70%&lesion&poor&target,&Circ&too&tortuous Salvatore&Maccaron 12DJunD14 Smith Declined Edward...VanWingerden 9/10/14 Smith advanced&age,&no&targets&for&imaging&due&to&bypass&grafts&and&several& stents Van&McGlavan 10/1/14 Hopkins life&expectancy&less...than&3&years&&very&advanced&age Gene&Church 10/3/14 Marques no&IVUS&targets&due&to&bypass&grafts,& stents Ronald&Berry 10/3/14 Tabesh no&IVUS&targets&due

Extracellular Adenosine Triphosphate Associated with Amphibian Erythrocytes: Inhibition of ATP Release by Anion Channel Blockers.

DTIC Science & Technology

1986-01-01

Paddle and Burnstock (326), Williams and Forrester (463), Forrester and Williams (151) and Clemens and Forrester (82) provide evidence that hypoxia may...an ATp4 - receptor. Fed. Proc. 45:208, 1986. (abstr) 99. Dahlen , S.E. and Hedqvist, P. ATP, B,y-methylene ATP andN adenosine inhibit non-cholinergic...regulation of skeletal muscle blood low. Circ Res. 29:375-384, 1971. 117. Dodd, J., Jahr, C.E., Hamilton, P.N., Heath, M.J., Matthew , W.P., and Jessell, T.M

Wusor II: A Computer Aided Instruction Program with Student Modelling Capabilities.

DTIC Science & Technology

1977-06-01

The Wun ,pus Advisor The Expert The Expert Chapter 3 Overview of the Expert From the work which was done on the expert of Wusor I, it was...network are numbered and represent caves. Circ led numbers represent caves which have been v is i ted by the player. To the top right of each v is i... ted cave is a marker for whether or not any warnings were sensed. (“U” indicates that a warn ing was sensed, and a “NW” means that a warning was not

Study of Silicon/silicon, Silicon/silicon Dioxide, and Metal-Oxide

NASA Astrophysics Data System (ADS)

Leung, To Chi

A variable-energy positron beam is used to study Si/Si, Si/SiO_2, and metal-oxide -semiconductor (MOS) structures. The capability of depth resolution and the remarkable sensitivity to defects have made the positron annihilation technique a unique tool in detecting open-volume defects in the newly innovated low temperature (300^circC) molecular-beam-epitaxy (MBE) Si/Si. These two features of the positron beam have further shown its potential role in the study of the Si/SiO_2. Distinct annihilation characteristics has been observed at the interface and has been studied as a function of the sample growth conditions, annealing (in vacuum), and hydrogen exposure. The MOS structure provides an effective way to study the electrical properties of the Si/SiO_2 interface as a function of applied bias voltage. The annihilation characteristics show a large change as the device condition is changed from accumulation to inversion. The effect of forming gas (FG) anneal is studied using positron annihilation and the result is compared with capacitance-voltage (C -V) measurements. The reduction in the number of interface states is found correlated with the changes in the positron spectra. The present study shows the importance of the positron annihilation technique as a non-contact, non-destructive, and depth-sensitive characterization tool to study the Si-related systems, in particular, the Si/SiO_2 interface which is of crucial importance in semiconductor technology, and fundamental understanding of the defects responsible for degradation of the electrical properties.

A Point-of-Need infrared mediated PCR platform with compatible lateral flow strip for HPV detection.

PubMed

Liu, Wenjia; Zhang, Mingfang; Liu, Xiaoyan; Sharma, Alok; Ding, Xianting

2017-10-15

With the increasing need of monitoring the epidemiology of serious infectious diseases, food hygiene, food additives and pesticide residues, it is urgent to develop portable, easy-to-use, inexpensive and rapid molecular diagnostic tools. Herein, we demonstrate a prototype of IR mediated Conducting Oil and CarbOn Nanotube circUlaTing PCR (IR-COCONUT PCR) platform for nucleic acid amplification. The presented platform offers a new solution for miniaturized PCR instruments with non-contact heaters by using conducting oil and carbon nanotube as a medium in IR mediated PCR. This novel platform offers accurate and flexible control of temperature through the integration of PID (proportional-integral-derivative) algorithms to manipulate the duty cycle of the voltage signals of IR LED and a peristaltic pump. The ramping rate of the introduced platform in current study is 1.5°C/s for heating speed and -2.0°C/s for cooling speed. This platform fulfills 30 thermal cycles within 50min which is a match to the conventional bench-top PCR thermo cyclers. For demonstration purpose, human papillomavirus (HPV) patient cervical swab specimens were examined. Downstream lateral flow strip (LFS) was also developed to quantity the PCR products from the IR-COCONUT PCR device within 25min. This PCR platform together with the compatible LFS shows great potential for in-field and Point-of-Need (PoN) testing of genetic or contagious diseases. Copyright © 2017 Elsevier B.V. All rights reserved.

Solar Wind Charge Exchange Contribution to the ROSAT All Sky Survey Maps

NASA Astrophysics Data System (ADS)

Uprety, Y.; Chiao, M.; Collier, M. R.; Cravens, T.; Galeazzi, M.; Koutroumpa, D.; Kuntz, K. D.; Lallement, R.; Lepri, S. T.; Liu, W.; McCammon, D.; Morgan, K.; Porter, F. S.; Prasai, K.; Snowden, S. L.; Thomas, N. E.; Ursino, E.; Walsh, B. M.

2016-10-01

DXL (Diffuse X-ray emission from the Local Galaxy) is a sounding rocket mission designed to estimate the contribution of solar wind charge eXchange (SWCX) to the diffuse X-ray background and to help determine the properties of the Local Hot Bubble. The detectors are large area thin-window proportional counters with a spectral response that is similar to that of the PSPC used in the ROSAT All Sky Survey (RASS). A direct comparison of DXL and RASS data for the same part of the sky viewed from quite different vantage points in the solar system, and the assumption of approximate isotropy for the solar wind, allowed us to quantify the SWCX contribution to all six RASS bands (R1-R7, excluding R3). We find that the SWCX contribution at l=140^\\circ ,b=0^\\circ , where the DXL path crosses the Galactic plane, is 33 % +/- 6 % ({statistical})+/- 12 % ({systematic}) for R1, 44 % +/- 6 % +/- 5 % for R2, 18 % +/- 12 % +/- 11 % for R4, 14 % +/- 11 % +/- 9 % for R5, and negligible for the R6 and R7 bands. Reliable models for the distribution of neutral H and He in the solar system permit estimation of the contribution of interplanetary SWCX emission over the the whole sky and correction of the RASS maps. We find that the average SWCX contribution in the whole sky is 26 % +/- 6 % +/- 13 % for R1, 30 % +/- 4 % +/- 4 % for R2, 8 % +/- 5 % +/- 5 % for R4, 6 % +/- 4 % +/- 4 % for R5, and negligible for R6 and R7.

Wave maps from Gödel's universe

NASA Astrophysics Data System (ADS)

Barletta, Elisabetta; Dragomir, Sorin; Magliaro, Marco

2014-10-01

Using a result by Koch (1988 Trans. Am. Math. Soc. 307 827-41) we realize Gödel's universe G_{α }^{4}=({{{R}}^{4}},{{g}_{α}}) as the total space of a principal {R}-bundle over a strictly pseudo-convex CR manifold M3 and exploit the analogy between {{g}_{Yalpha;}} and Fefferman's metric {{F}_{θ}} (Fefferman 1976 Ann. Math. 103 395-416 104 393-4) to show that for any {R}-invariant wave map Φ of G_{α}^{4} into a Riemannian manifold N, the corresponding base map φ :{{M}^{3}}\\to N is subelliptic harmonic, with respect to a canonical choice of contact form θ on M3. We show that the subelliptic Jacobi operator J_{b}^{φ} of ϕ has a discrete Dirichlet spectrum on any bounded domain D\\subset {{M}^{3}} supporting the Poincaré inequality on \\mathop{W}\\limits^{\\circ }{}_{H}^{1,2}(D,{{φ}^{-1}}TN) and Kondrakov compactness, i.e. compactness of the embedding \\mathop{W}\\limits^{\\circ }{}_{H}^{1,2}(D,{{φ }^{-1}}TN)\\hookrightarrow {{L}^{2}}(D,{{φ}^{-1}}TN). We exhibit an explicit solution π :G_{α}^{4}\\to {{M}^{3}} to the wave map system on G_{α}^{4}, of index in{{d}^{Ω}}(π)\\geqslant 1 for any bounded domain Ω \\subset G_{α}^{4}. Mounoud's distance (Mounoud 2001 Differ. Geom. Appl. 15 47-57) d_{{{G}_{0}}, Ω }^{∞}({{g}_{α }}, {{F}_{θ}}) is bounded below by a constant depending only on the rotation frequency of Gödel's universe, thus giving a measure of the bias of {{g}_{α}} from being Fefferman like in the region Ω \\subset {{{R}}^{4}}.

80-Myr history of buoyancy and volcanic fluxes along the trails of the Walvis and St. Helena hotspots (South Atlantic)

NASA Astrophysics Data System (ADS)

Vidal, V.; Adam, C.; Escartin, J.

2007-12-01

Walvis and St.~Helena are the only long-lived hotspot chains in the South Atlantic. Therefore, their characterization is important to constrain the processes associated with mantle plume formation, their temporal evolution, and the interaction with plate and mantle dynamics in the region. We study the temporal evolution of plume buoyancy and magma production rate along both hotspot chains, which are constrained from the swell and volume of volcanic materials emplaced along the chain. The regional depth anomaly is calculated by correcting the 2' bathymetry grid of Smith & Sandwell (1997) for thermal subsidence and sediment loading. We separate the topography associated with volcanism and the swell surrounding the hotspot chains using the MiFil filtering method (Adam et al., 2005). We then estimate the temporal variations associated with both parameters by computing volumes along the hotspot tracks. Neither Walvis nor St.~Helena show a 'classical' hotspot behavior. We find that two plumes are at the origin of the St.~Helena chain. This study also shows a swell associated with the Circe seamount, supporting the existence of a hotspot NW of the St.~Helena trail. The variation in swell and volcanic fluxes suggests temporal variability in the plume behavior at time scales of 10-20~m.y. and 5~m.y., which may be related to oscillations and instabilities of the plume conduit, respectively. Cumulative fluxes in the area are largest for Walvis and weakest for Circe, and all are significantly lower than that reported for the Hawai'i hotspot.

Self-Reported Snoring Frequency and Incidence of Cardiovascular Disease: The Circulatory Risk in Communities Study (CIRCS)

PubMed Central

Nagayoshi, Mako; Tanigawa, Takeshi; Yamagishi, Kazumasa; Sakurai, Susumu; Kitamura, Akihiko; Kiyama, Masahiko; Okada, Takeo; Maeda, Kenji; Ohira, Tetsuya; Imano, Hironori; Sato, Shinichi; Iso, Hiroyasu

2012-01-01

Background Although associations between snoring and cardiovascular disease have been reported in several prospective studies, there is limited evidence from Asian populations. The objective of this study was to determine if there is an association between self-reported snoring frequency and the incidence of cardiovascular disease in Japanese. Methods The subjects were 2350 men and 4163 women aged 40 to 69 years who lived in 3 communities in Japan. All subjects were participants in the Circulatory Risk in Communities Study (CIRCS) and were followed for 6 years. Incidence of cardiovascular disease during the follow-up period comprised events of myocardial infarction, angina pectoris, sudden cardiac death and stroke. Results During the 6-year follow-up period, 97 participants (56 men and 41 women) had cardiovascular events. After adjustment for potential confounding factors, self-reported snoring frequency was associated with an increased risk of cardiovascular events among women but not men. The hazard ratios (95% CI) for cardiovascular events were 0.9 (0.4–2.0) for sometimes snoring and 2.5 (1.0–6.1) for everyday snoring in women and 0.7 (0.3–1.3) and 1.0 (0.5–2.1), respectively, in men. Further adjustment for body mass index attenuated the association in women; the respective hazard ratios for cardiovascular events were 0.9 (0.4–1.9) and 2.1 (0.9–5.4). Conclusions Self-reported habitual snoring was associated with increased risk of cardiovascular events among Japanese women. Overweight may partly mediate this association. PMID:22447210

Distortion of Magnetic Fields in a Starless Core II: 3D Magnetic Field Structure of FeSt 1-457

NASA Astrophysics Data System (ADS)

Kandori, Ryo; Tamura, Motohide; Tomisaka, Kohji; Nakajima, Yasushi; Kusakabe, Nobuhiko; Kwon, Jungmi; Nagayama, Takahiro; Nagata, Tetsuya; Tatematsu, Ken'ichi

2017-10-01

Three-dimensional (3D) magnetic field information on molecular clouds and cores is important for revealing their kinematical stability (magnetic support) against gravity, which is fundamental for studying the initial conditions of star formation. In the present study, the 3D magnetic field structure of the dense starless core FeSt 1-457 is determined based on the near-infrared polarimetric observations of the dichroic polarization of background stars and simple 3D modeling. With an obtained angle of line-of-sight magnetic inclination axis {θ }{inc} of 45^\\circ +/- 10^\\circ and previously determined plane-of-sky magnetic field strength {B}{pol} of 23.8 ± 12.1 μ {{G}}, the total magnetic field strength for FeSt 1-457 is derived to be 33.7 ± 18.0 μ {{G}}. The critical mass of FeSt 1-457, evaluated using both magnetic and thermal/turbulent support is {M}{cr}=3.70+/- 0.92 {M}⊙ , which is identical to the observed core mass, {M}{core}=3.55+/- 0.75 {M}⊙ . We thus conclude that the stability of FeSt 1-457 is in a condition close to the critical state. Without infalling gas motion and no associated young stars, the core is regarded to be in the earliest stage of star formation, I.e., the stage just before the onset of dynamical collapse following the attainment of a supercritical condition. These properties could make FeSt 1-457 one of the best starless cores for future studies of the initial conditions of star formation.

The Electromagnetic Counterpart of the Binary Neutron Star Merger LIGO/Virgo GW170817. V. Rising X-Ray Emission from an Off-axis Jet

NASA Astrophysics Data System (ADS)

Margutti, R.; Berger, E.; Fong, W.; Guidorzi, C.; Alexander, K. D.; Metzger, B. D.; Blanchard, P. K.; Cowperthwaite, P. S.; Chornock, R.; Eftekhari, T.; Nicholl, M.; Villar, V. A.; Williams, P. K. G.; Annis, J.; Brown, D. A.; Chen, H.; Doctor, Z.; Frieman, J. A.; Holz, D. E.; Sako, M.; Soares-Santos, M.

2017-10-01

We report the discovery of rising X-ray emission from the binary neutron star merger event GW170817. This is the first detection of X-ray emission from a gravitational-wave (GW) source. Observations acquired with the Chandra X-ray Observatory (CXO) at t≈ 2.3 days post-merger reveal no significant emission, with {L}x≲ 3.2× {10}38 {erg} {{{s}}}-1 (isotropic-equivalent). Continued monitoring revealed the presence of an X-ray source that brightened with time, reaching {L}x≈ 9× {10}38 {erg} {{{s}}}-1 at ≈ 15.1 days post-merger. We interpret these findings in the context of isotropic and collimated relativistic outflows (both on- and off-axis). We find that the broadband X-ray to radio observations are consistent with emission from a relativistic jet with kinetic energy {E}k˜ {10}49-50 {erg}, viewed off-axis with {θ }{obs}˜ 20^\\circ {--}40^\\circ . Our models favor a circumbinary density n˜ {10}-4{--}{10}-2 {{cm}}-3, depending on the value of the microphysical parameter {ɛ }B={10}-4{--}{10}-2. A central-engine origin of the X-ray emission is unlikely. Future X-ray observations at t≳ 100 days, when the target will be observable again with the CXO, will provide additional constraints to solve the model degeneracies and test our predictions. Our inferences on {θ }{obs} are testable with GW information on GW170817 from advanced LIGO/Virgo on the binary inclination.

An integrated assessment of climate change impacts for Athens- relevance to stakeholders and policy makers

NASA Astrophysics Data System (ADS)

Giannakopoulos, C.; Hatzaki, M.; Kostopoulou, E.; Varotsos, K.

2010-09-01

Analysing climate change and its impact needs a production of relevant elements for policy making that can be very different from the parameters considered by climate experts. In the framework of EU project CIRCE, a more realistic approach to match stakeholders and policy-makers demands is attempted. For this reason, within CIRCE selected case studies have been chosen that will provide assessments that can be integrated in practical decision making. In this work, an integrated assessment of climate change impacts on several sectors for the urban site of Athens in Greece is presented. The Athens urban case study has been chosen since it provides excellent opportunities for using an integrated approach across multiple temporal and spatial scales and sectors. In the spatial dimension, work extends from the inner city boundaries to the surrounding mountains and forests. In the temporal dimension, research ranges from the current observed time period (using available meteorological and sector data) to future time periods using data from several climate change projections. In addition, a multi-sector approach to climate change impacts is adopted. Impacts sectors covered range from direct climate impacts on natural ecosystems (such as flash floods, air pollution and forest fire risk) to indirect impacts resulting from combined climate-social-economic linkages (such as energy demand, tourism and health). Discussion of impact sector risks and adaptation measures are also exploited. Case-study work on impact sector risk to climate change is of particular interest to relevant policy makers and stakeholders, communication with who is ensured through a series of briefing notes and information sheets and through regional workshops.

Polarization studies on zinc in hydrochloric acid solution containing some organic solvents

NASA Astrophysics Data System (ADS)

Mohamed, A. K.

1999-05-01

The corrosion behaviour of zinc metal in some organic solvents was tested electrochemically using galvanometric polarization measurements. The results showed that the studied organic solvents act as mixed type inhibitors. The inhibition was assumed to occur via physical adsorption of the inhibitor molecules fitting a Temkin's isotherm. The inhibition eficiency of the solvents increase in the order: glycerol>ethylene glycol>DMSO>dioxane. This order is not affected by the variation in temperature in the range 35-55 circC. The increase in temperature was found to increase the corrosion in absence and in presence of inhibitors. Some thermodynamic parameters for adsorption were also computed and discussed. Le comportement de corrosion du zinc métallique dans certains solvants organiques a été testé électrochimiquement en utilisant les mesures de polarisation galvanométrique. Les résultats ont montré que les solvants organiques étudiés agissent comme des inhibiteurs de type mixte. L'inhibition semble se produire par l'adsorption physique des molécules inhibitrices selon une isotherme de Temkin. L'efficacité d'inhibition des solvants augmente dans l'ordre suivant : glycérol>éthylène glycol>DMSO>dioxane. Cet ordre n'est pas affecté par une variation de température dans l'intervalle compris entre 35 et 55 circC. La corrosion augmente avec la température, en absence ou en présence d'inhibiteurs. Certains paramètres thermodynamiques d'adsorption ont été calculés et discutés.

Measuring cosmic shear and birefringence using resolved radio sources

NASA Astrophysics Data System (ADS)

Whittaker, Lee; Battye, Richard A.; Brown, Michael L.

2018-02-01

We develop a new method of extracting simultaneous measurements of weak lensing shear and a local rotation of the plane of polarization using observations of resolved radio sources. The basis of the method is an assumption that the direction of the polarization is statistically linked with that of the gradient of the total intensity field. Using a number of sources spread over the sky, this method will allow constraints to be placed on cosmic shear and birefringence, and it can be applied to any resolved radio sources for which such a correlation exists. Assuming that the rotation and shear are constant across the source, we use this relationship to construct a quadratic estimator and investigate its properties using simulated observations. We develop a calibration scheme using simulations based on the observed images to mitigate a bias which occurs in the presence of measurement errors and an astrophysical scatter on the polarization. The method is applied directly to archival data of radio galaxies where we measure a mean rotation signal of $\\omega=-2.02^{\\circ}\\pm0.75^{\\circ}$ and an average shear compatible with zero using 30 reliable sources. This level of constraint on an overall rotation is comparable with current leading constraints from CMB experiments and is expected to increase by at least an order of magnitude with future high precision radio surveys, such as those performed by the SKA. We also measure the shear and rotation two-point correlation functions and estimate the number of sources required to detect shear and rotation correlations in future surveys.

Fabrication and Properties of a Metal-Insulator - Type Oxygen Sensor Using Lanthanum Trifluoride as the Sole Dielectric.

NASA Astrophysics Data System (ADS)

Mattingly, William Brashear, III

1995-01-01

Oxygen sensors were fabricated using a metal-insulator -semiconductor construction where the sole 'insulator' is a thin film of LaF_3, an ionic conductor. The typical oxide or nitride layers were eliminated producing a simple Pt/LaF_3/Si design. LaF_3 films, 200-300nm thick, were directly deposited on n-type Si(111) using a high temperature effusion cell in an ultra high vacuum MBE chamber. The film morphology could be controlled from polycrystalline to near single crystal epitaxy. Epitaxial films exhibited a single relaxed variant with the LaF _3 c-axis normal to the silicon surface and the in-plane LaF_3(10^ -10) parallel to Si(110). Polycrystalline films also showed a high degree of LaF_3 c-axis normal texture. Films doped with strontium were also produced. Polycrystalline films were more robust and fabricated into MIS (metal-insulator-semiconductor) capacitors. Capacitance voltage tests of the devices demonstrate nearly ideal MIS capacitor behavior. The flatband voltages were typically within 300mV of the calculated value. Bias challenge tests developed in the lab showed less than 70mV flatband voltage shift. The dielectric constant of undoped LaF_3 films measured close to 14. Doped films, rm Sr_{x}La_ {1-x}F_3 x =.06, showed a dielectric constant of 275, at 100kHz. Oxygen partial pressure tests were performed with mixtures of dry nitrogen and dry oxygen. Oxygen partial pressures were varied between 2.5 times 10^{-4} and 1.0 atmosphere. The steady state data are consistent with a Pt/LaF _3 interface adsorption mechanism, where the work function of the platinum gate metal is modulated. The mechanism is not a half-cell Nernst-type response. Langmiur isotherm fitted data indicate the response range for undoped devices is 0.3 V. Signal drift was less than 5 mV/day. The metal free-surface reactions and the dipole species at the Pt/LaF_3 interface are yet to be determined. Device kinetic studies show the time required for full equilibration after a step in oxygen partial pressure is 24 hours at 90^circC. Initial response kinetics to downward steps in oxygen show the activation energy of the process is 0.54 eV.

Real-time high-resolution PC-based system for measurement of errors on compact disks

NASA Astrophysics Data System (ADS)

Tehranchi, Babak; Howe, Dennis G.

1994-10-01

Hardware and software utilities are developed to directly monitor the Eight-to-Fourteen (EFM) demodulated data bytes at the input of a CD player's Cross-Interleaved Reed-Solomon Code (CIRC) block decoder. The hardware is capable of identifying erroneous data with single-byte resolution in the serial data stream read from a Compact Disc by a CDD 461 Philips CD-ROM drive. In addition, the system produces graphical maps that show the physical location of the measured errors on the entire disc, or via a zooming and planning feature, on user selectable local disc regions.

Sorption of certain isatins on various sorbents under RP-HPLC conditions

NASA Astrophysics Data System (ADS)

Konstantinov, A. V.; Shafigulin, R. V.; Il'in, M. M.; Davankov, V. A.; Bulanova, A. V.; Purygin, P. P.

2013-06-01

The results from chromatographic analysis of biologically active isatin derivatives on hyper-crosslinked polystyrene (HCLPS) and silica gel modified by octadecyl groups (SilC18) are presented. The constants of distribution of sorbates between a mobile phase and the investigated sorbents ( K x ) and the changes in the standard differential molar Gibbs energies of adsorption (Δ _a bar G^circ ) are calculated, along with the chromatographic retention-physicochemical property of sorbate dependences. It is found that the equations describing these dependences have high forecasting ability with respect to the values of retention factors of the investigated sorbates.

[Figures of anima in the Odyssey].

PubMed

Meneghello, Mauro

2012-01-01

Feminine characters in the Odyssey show different aspects of the archetype: Mother and Anima (C.G. Jung). From an Analytical Psychology perspective the encounters of Odysseus with goddesses: Circe, Calypso, Ino are looked at as different and successive stages of the hero's way into the inconscious, who shows himself in feminine figures, being masculine the consciousness of the hero. Nausicaa is a new, nearly-human figure of Anima who appears after the symbolic death of Odysseus and leads him to the royal couple Alcinous-Arete: in front of them all he finds his new, reborn, personality by creating and narrating his own myth.

Single-Molecule Fluorescence In Situ Hybridization (FISH) of Circular RNA CDR1as.

PubMed

Kocks, Christine; Boltengagen, Anastasiya; Piwecka, Monika; Rybak-Wolf, Agnieszka; Rajewsky, Nikolaus

2018-01-01

Individual mRNA molecules can be imaged in fixed cells by hybridization with multiple, singly labeled oligonucleotide probes, followed by computational identification of fluorescent signals. This approach, called single-molecule RNA fluorescence in situ hybridization (smRNA FISH), allows subcellular localization and absolute quantification of RNA molecules in individual cells. Here, we describe a simple smRNA FISH protocol for two-color imaging of a circular RNA, CDR1as, simultaneously with an unrelated messenger RNA. The protocol can be adapted to circRNAs that coexist with overlapping, noncircular mRNA isoforms produced from the same genetic locus.

High-Resolution Electron Energy Loss Studies of Oxygen, Hydrogen, Nitrogen, Nitric Oxide, and Nitrous Oxide Adsorption on Germanium Surfaces.

NASA Astrophysics Data System (ADS)

Entringer, Anthony G.

The first high resolution electron energy loss spectroscopy (HREELS) studies of the oxidation and nitridation of germanium surfaces are reported. Both single crystal Ge(111) and disordered surfaces were studied. Surfaces were exposed to H, O_2, NO, N _2O, and N, after cleaning in ultra-high vacuum. The Ge surfaces were found to be non-reactive to molecular hydrogen (H_2) at room temperature. Exposure to atomic hydrogen (H) resulted hydrogen adsorption as demonstrated by the presence of Ge-H vibrational modes. The HREEL spectrum of the native oxide of Ge characteristic of nu -GeO_2 was obtained by heating the oxide to 200^circC. Three peaks were observed at 33, 62, and 106 meV for molecular oxygen (O_2) adsorbed on clean Ge(111) at room temperature. These peaks are indicative of dissociative bonding and a dominant Ge-O-Ge bridge structure. Subsequent hydrogen exposure resulted in a shift of the Ge-H stretch from its isolated value of 247 meV to 267 meV, indicative of a dominant +3 oxidation state. A high density of dangling bonds and defects and deeper oxygen penetration at the amorphous Ge surface result in a dilute bridge structure with a predominant +1 oxidation state for similar exposures. Molecules of N_2O decompose at the surfaces to desorbed N_2 molecules and chemisorbed oxygen atoms. In contrast, both oxygen and nitrogen are detected at the surfaces following exposure to NO molecules. Both NO and N_2O appear to dissociate and bond at the top surface layer. Molecular nitrogen (N_2) does not react with the Ge surfaces, however, a precursor Ge nitride is observed at room temperature following exposure to nitrogen atoms and ions. Removal of oxygen by heating of the NO-exposed surface to 550^circC enabled the identification of the Ge-N vibrational modes. These modes show a structure similar to that of germanium nitride. This spectrum is also identical to that of the N-exposed surface heated to 550^circC. Surface phonon modes of the narrow-gap semiconducting compounds Mg _2Sn, Mg_2Ge and Mg _2Si were detected at 29, 32, and 40 meV, respectively. The native oxide of all three show a dominant Mg-O mode at 80 meV. Probable Sn-O, Ge-O, and Si-O modes are also identified. Complete removal of the oxide layer was accomplished only on the Mg_2 Si surface but resulted in no noticeable change in the energy of the surface phonon. Results are compared to the known bulk optical properties of these compounds.

The Fabrication of (bismuth, LEAD)(2) STRONTIUM(2) CALCIUM(2) COPPER(3) Oxygen(x) Superconductor in Bulk and Tape Forms

NASA Astrophysics Data System (ADS)

Lim, Hanjin

High-T_{rm c}<=ad doped rm Bi_2Sr_2Ca_2Cu _2Cu_3O_{x} (BSCCO 2223) superconductor bulk materials were prepared using conventional powder metallurgy techniques, which were made from precursors having different histories. The ease of formation of superconducting phases was highly dependent on the processing of primitive powder. With the three -powder process that combines three kinds of calcined precursor powders, the formation of the BSCCO superconductor was accelerated and the amount of the secondary phase (e.g., Ca_2CuO_3) was reduced. The critical transition temperature (T _{rm c}) of the superconductor from the three-powder process is higher than that from the one-powder process. In lead-doped BSCCO 2223, positron trapping and annihilation evidently occur in the open BiO double layers rather than in the superconducting CuO_2 layers of the structure. Both positron annihilation parameters (tau_1, tau _2, overlinetau) and Doppler parameters (P, W, P/W) were insensitive to the superconducting transition in this material. This is quite opposite to the case of YBCO and Dy doped YBCO where positron annihilation is sensitive to the superconducting transition. High-T_{rm c} BSCCO superconducting tapes were fabricated using the powder -in-tube (PIT) method that includes heat treatments as well as mechanical processing such as drawing, rolling, and pressing. The highest critical current densities (J _{rm c}) at 5 and 77 K were 5.12 times 10^5 A/cm^2 and 1.77 times 10^4 A/cm^2 , respectively, for the tape sample which was solid state processed at 840^circC with three short sintering steps. J_{ rm c} values at 5 and 77 K of tape samples were 1 and 2 orders of magnitude higher than those of bulk samples, respectively. The preferred orientations of the BSCCO 2212 phase in the tape samples were basal and (1 1 13) textures; for the BSCCO 2223 phase preferred orientations were also basal and (1 1 19) textures. By taking the ratios of the texture coefficients (TCs) for (0 0 1) and (1 1 0) reflections, one can describe the strength of the basal texture for each superconducting phase in both bulk and tape. From these ratios one can say that the best basal texture for the tape BSCCO 2212 was produced by the procedure which included partial melting at 850^circ C for 0.3 h. The best treatment for BSCCO 2223 was the tape sample with solid state processing at 840 ^circC in 10% oxygen.

In-Situ Grown P-N Junctions in MERCURY(1-X) Cadmium(x) Telluride for IR Detectors.

NASA Astrophysics Data System (ADS)

Rao, Vithal Rajaram

In-situ grown p-n junctions in mercury cadmium telluride (Hg_{1-x}Cd _{x}Te with x between 0.2-0.3) were fabricated and characterized in this study. Fabrication of these junctions involved the growth of p-n structures at 370^circC on CdTe substrates by Organometallic Vapor Phase Epitaxy. P-type doping with arsenic was achieved by using tertiarybutylarsine as the precursor. N-type doping was obtained either with indium, using trimethylindium as the precursor or by leaving the layer undoped. These p-n structures were processed to fabricate photodiodes. Their electrical performance was evaluated and conclusions regarding current mechanisms which determine their behavior were drawn. By varying the Hg pressure between 0.07-0.13 atm, p-type doping level in the 10^{16 }/cm^3-rm2times10 ^{17}/cm^3 range was achieved. At higher values of Hg pressure, the arsenic doping level in the layer increased significantly. This is possibly due to an increase in Te vacancies, allowing arsenic to occupy more group VI sites where they behave as acceptors. The activation efficiency of arsenic in the layers was measured to be equal to 50%. A high temperature anneal at 415 ^circC for 15 minutes did not result in any increase in the activation efficiency, possibly indicating the presence of stable As-complexes in the layer. Growth of p^+n structures was carried out in a single run. The acceptor concentration in the p-type cap layer was 5-rm10times10 ^{16}/cm^3. Indium doped n-type base layers had a carrier concentration of 1- rm2times10^{16}/cm^3 , while undoped layers had a n-type background carrier concentration of 4-rm6times10^ {14}/cm^3. The cap layer was 3 μm thick with x = 0.30, while the base layer was 8mum thick with x = 0.26. Under the growth conditions, arsenic showed a diffusion coefficient of rm2times10 ^{13}cm^2/s, which was higher than the interdiffusion coefficient of the alloy junction. This resulted in placement of the p-n junction in the lower bandgap base layer, which is necessary for high quantum efficiency devices. Photodiodes showed a cutoff wavelength of 7.5 mum, which correlates with the alloy composition of the base layer. Measured R_0 A of these diodes varied between 1-100 ohm-cm ^2. In the lower R_0A diodes, reverse bias was dominated by surface currents, possibly due to degradation of the passivating layer. Diodes with higher R_0A showed under reverse bias that trap assisted tunneling current dominated their performance. The origin of these traps is process related and could correspond to the presence of inactivated arsenic close to the p-n junction. Forward bias was dominated by diffusion and recombination currents, while the presence of additional leakage currents was evident.

Defects and Transport in Lithium Niobium Trioxide

NASA Astrophysics Data System (ADS)

Mehta, Apurva

1990-01-01

This dissertation presents work done on characterizing the defects and transport properties of congruent LiNbO _3. The focus of the study is the high temperature (800^circC to 1000^circC) equilibrium defect structure. The majority defects are described in terms of the 'LiNbO_3-ilmenite' defect model previously presented (26). Here the emphasis is placed on quantifying the defect concentrations. Congruent LiNbO_3 is highly nonstoichiometric. The large concentration of ionic defects present are mobile and contribute to electrical conduction. The ionic conduction was separated from the total conduction using defect chemistry and the transference number thus obtained was checked against the transference number obtained in a galvanic cell measurement. LiNbO_3 is an insulator (band gap = 4 eV). Hence one assumes that almost all of the conduction electrons are created by reduction. The degree of oxygen nonstoichiometry, a measure of the extent of chemical reduction, and the electron concentrations, were quantified as a function of oxygen partial pressure and the temperature by coulometric titration. The nonstoichiometry thus obtained was compared with nonstoichiometry obtained by TGA measurements. By fixing the phase composition of the sample in a buffered system, a set of constant composition measurements could be undertaken. These constant composition measurements were used to obtain the enthalpy of formation of conduction electrons, 1.95 eV, and the hopping energy for their motion at elevated temperatures, 0.55 eV, independently. The sum of the two energies was obtained by measuring the temperature dependence of the electronic conduction. The sum of the energies was found to be in excellent agreement with the energy obtained from equilibrium conduction. In conclusion, a quantitative and self-consistent picture of defects and their migration in LiNbO _3 was obtained.

circHIPK2-mediated σ-1R promotes endoplasmic reticulum stress in human pulmonary fibroblasts exposed to silica.

PubMed

Cao, Zhouli; Xiao, Qingling; Dai, Xiaoniu; Zhou, Zewei; Jiang, Rong; Cheng, Yusi; Yang, Xiyue; Guo, Huifang; Wang, Jing; Xi, Zhaoqing; Yao, Honghong; Chao, Jie

2017-12-13

Silicosis is characterized by fibroblast accumulation and excessive deposition of extracellular matrix. Although the roles of SiO 2 -induced chemokines and cytokines released from alveolar macrophages have received significant attention, the direct effects of SiO 2 on protein production and functional changes in pulmonary fibroblasts have been less extensively studied. Sigma-1 receptor, which has been associated with cell proliferation and migration in the central nervous system, is expressed in the lung, but its role in silicosis remains unknown. To elucidate the role of sigma-1 receptor in fibrosis induced by silica, both the upstream molecular mechanisms and the functional effects on cell proliferation and migration were investigated. Both molecular biological assays and pharmacological techniques, combined with functional experiments, such as migration and proliferation, were applied in human pulmonary fibroblasts from adults to analyze the molecular and functional changes induced by SiO 2 . SiO 2 induced endoplasmic reticulum stress in association with enhanced expression of sigma-1 receptor. Endoplasmic reticulum stress promoted migration and proliferation of human pulmonary fibroblasts-adult exposed to SiO 2 , inducing the development of silicosis. Inhibition of sigma-1 receptor ameliorated endoplasmic reticulum stress and fibroblast functional changes induced by SiO 2 . circHIPK2 is involved in the regulation of sigma-1 receptor in human pulmonary fibroblasts-adult exposed to SiO 2 . Our study elucidated a link between SiO 2 -induced fibrosis and sigma-1 receptor signaling, thereby providing novel insight into the potential use of sigma-1 receptor/endoplasmic reticulum stress in the development of novel therapeutic strategies for silicosis treatment.

The Electromagnetic Counterpart of the Binary Neutron Star Merger LIGO/Virgo GW170817. V. Rising X-Ray Emission from an Off-axis Jet

DOE PAGES

Margutti, Raffaella; Berger, E.; Fong, W.; ...

2017-10-16

Here, we report the discovery of rising X-ray emission from the binary neutron star merger event GW170817. This is the first detection of X-ray emission from a gravitational-wave (GW) source. Observations acquired with the Chandra X-ray Observatory ( CXO) atmore » $$t\\approx 2.3$$ days post-merger reveal no significant emission, with $${L}_{x}\\lesssim 3.2\\times {10}^{38}\\,\\mathrm{erg}\\,{{\\rm{s}}}^{-1}$$ (isotropic-equivalent). Continued monitoring revealed the presence of an X-ray source that brightened with time, reaching $${L}_{x}\\approx 9\\times {10}^{38}\\,\\mathrm{erg}\\,{{\\rm{s}}}^{-1}$$ at $$\\approx 15.1$$ days post-merger. We interpret these findings in the context of isotropic and collimated relativistic outflows (both on- and off-axis). We find that the broadband X-ray to radio observations are consistent with emission from a relativistic jet with kinetic energy $${E}_{k}\\sim {10}^{49-50}\\,\\mathrm{erg}$$, viewed off-axis with $${\\theta }_{\\mathrm{obs}}\\sim 20^\\circ \\mbox{--}40^\\circ $$. Our models favor a circumbinary density $$n\\sim {10}^{-4}\\mbox{--}{10}^{-2}\\,{\\mathrm{cm}}^{-3}$$, depending on the value of the microphysical parameter $${\\epsilon }_{B}={10}^{-4}\\mbox{--}{10}^{-2}$$. A central-engine origin of the X-ray emission is unlikely. Future X-ray observations at $$t\\gtrsim 100$$ days, when the target will be observable again with the CXO, will provide additional constraints to solve the model degeneracies and test our predictions. Our inferences on $${\\theta }_{\\mathrm{obs}}$$ are testable with GW information on GW170817 from advanced LIGO/Virgo on the binary inclination.« less

a Climatology of Global Precipitation.

NASA Astrophysics Data System (ADS)

Legates, David Russell

A global climatology of mean monthly precipitation has been developed using traditional land-based gage measurements as well as derived oceanic data. These data have been screened for coding errors and redundant entries have been removed. Oceanic precipitation estimates are most often extrapolated from coastal and island observations because few gage estimates of oceanic precipitation exist. One such procedure, developed by Dorman and Bourke and used here, employs a derived relationship between observed rainfall totals and the "current weather" at coastal stations. The combined data base contains 24,635 independent terrestial station records and 2223 oceanic grid-point records. Raingage catches are known to underestimate actual precipitation. Errors in the gage catch result from wind -field deformation, wetting losses, and evaporation from the gage and can amount to nearly 8, 2, and 1 percent of the global catch, respectively. A procedure has been developed to correct many of these errors and has been used to adjust the gage estimates of global precipitation. Space-time variations in gage type, air temperature, wind speed, and natural vegetation were incorporated into the correction procedure. Corrected data were then interpolated to the nodes of a 0.5^circ of latitude by 0.5^circ of longitude lattice using a spherically-based interpolation algorithm. Interpolation errors are largest in areas of low station density, rugged topography, and heavy precipitation. Interpolated estimates also were compared with a digital filtering technique to access the aliasing of high-frequency "noise" into the lower frequency signals. Isohyetal maps displaying the mean annual, seasonal, and monthly precipitation are presented. Gage corrections and the standard error of the corrected estimates also are mapped. Results indicate that mean annual global precipitation is 1123 mm with 1251 mm falling over the oceans and 820 mm over land. Spatial distributions of monthly precipitation generally are consistent with existing precipitation climatologies.

A time series study on the effects of heat on mortality and evaluation of heterogeneity into European and Eastern-Southern Mediterranean cities: results of EU CIRCE project.

PubMed

Leone, Michela; D'Ippoliti, Daniela; De Sario, Manuela; Analitis, Antonis; Menne, Bettina; Katsouyanni, Klea; De' Donato, Francesca K; Basagana, Xavier; Salah, Afif Ben; Casimiro, Elsa; Dörtbudak, Zeynep; Iñiguez, Carmen; Peretz, Chava; Wolf, Tanja; Michelozzi, Paola

2013-07-03

The Mediterranean region is particularly vulnerable to the effect of summer temperature.Within the CIRCE project this time-series study aims to quantify for the first time the effect of summer temperature in Eastern-Southern Mediterranean cities and compared it with European cities around the Mediterranean basin, evaluating city characteristics that explain between-city heterogeneity. The city-specific effect of maximum apparent temperature (Tappmax) was assessed by Generalized Estimation Equations, assuming a linear threshold model. Then, city-specific estimates were included in a random effect meta-regression analysis to investigate the effect modification by several city characteristics. Heterogeneity in the temperature-mortality relationship was observed among cities. Thresholds recorded higher values in the warmest cities of Tunis (35.5°C) and Tel-Aviv (32.8°C) while the effect of Tappmax above threshold was greater in the European cities. In Eastern-Southern Mediterranean cities a higher effect was observed among younger age groups (0-14 in Tunis and 15-64 in Tel-Aviv and Istanbul) in contrast with the European cities where the elderly population was more vulnerable. Climate conditions explained most of the observed heterogeneity and among socio-demographic and economic characteristics only health expenditure and unemployment rate were identified as effect modifiers. The high vulnerability observed in the young populations in Eastern-Southern Mediterranean cities represent a major public health problem. Considering the large political and economic changes occurring in this region as well future temperature increase due to climate change, it is important to strengthen research and public health efforts in these Mediterranean countries.

A Experimental Study of Fluctuating Pressure Loads Beneath Swept Shock Wave/boundary Layer Interactions

NASA Astrophysics Data System (ADS)

Garg, Sanjay

An experimental research program providing basic knowledge and establishing a database on the fluctuating pressure loads produced on aerodynamic surfaces beneath three-dimensional shock wave/boundary layer interactions is described. Such loads constitute a fundamental problem of critical concern to future supersonic and hypersonic flight vehicles. A turbulent boundary layer on a flat plate is subjected to interactions with swept planar shock waves generated by sharp fins. Fin angles from 10 ^circ to 20^circ at freestream Mach numbers of 3 and 4 produce a variety of interaction strengths from weak to very strong. Miniature pressure transducers flush-mounted in the flat plate have been used to measure interaction-induced wall pressure fluctuations. The distributions of properties of the pressure fluctuations, such as their rms level, amplitude distribution and power spectra, are also determined. Measurements have been made for the first time in the aft regions of these interactions, revealing fluctuating pressure levels as high as 155 dB, which places them in the category of significant aeroacoustic load generators. The fluctuations near the foot of the fin are dominated by low frequency (0-5 kHz) components, and are caused by a previously unrecognized random motion of the primary attachment line. This phenomenon is probably intimately linked to the unsteadiness of the separation shock at the start of the interaction. The characteristics of the pressure fluctuations are explained in light of the features of the interaction flowfield. In particular, physical mechanisms responsible for the generation of high levels of surface pressure fluctuations are proposed based on the results of the study. The unsteadiness of the flowfield of the surface is also examined via a novel, non-intrusive optical technique. Results show that the entire shock structure generated by the interaction undergoes relatively low-frequency oscillations.

Transport of Helium Pickup Ions within the Focusing Cone: Reconciling STEREO Observations with IBEX

NASA Astrophysics Data System (ADS)

Quinn, P. R.; Schwadron, N. A.; Möbius, E.

2016-06-01

Recent observations of the pickup helium focusing cone by STEREO/Plasma and Suprathermal Ion Composition indicate an inflow longitude of the interstellar wind that differs from the observations of IBEX by 1\\buildrel{\\circ}\\over{.} 8+/- 2\\buildrel{\\circ}\\over{.} 4. It has been under debate whether the transport of helium pickup ions with an anisotropic velocity distribution is the cause of this difference. If so, the roughly field-aligned pickup ion streaming relative to the solar wind should create a shift in the pickup ion density relative to the focusing cone. A large pickup ion streaming depends on the size of the mean free path. Therefore, the observed longitudinal shift in the pickup ion density relative to the neutral focusing cone may carry fundamental information about the mean free path experienced by pickup ions inside 1 au. We test this hypothesis using the Energetic Particle Radiation Environment Module (EPREM) model by simulating the transport of helium pickup ions within the focusing cone finding a mean free path of {λ }\\parallel =0.19+0.29(-0.19) au. We calculate the average azimuthal velocity of pickup ions and find that the anisotropic distribution reaches ˜8% of the solar wind speed. Lastly, we isolate transport effects within EPREM, finding that pitch-angle scattering, adiabatic focusing, perpendicular diffusion, and particle drift contribute to shifting the focusing cone 20.00%, 69.43%, 10.56%, and \\lt 0.01 % , respectively. Thus we show with the EPREM model that the transport of pickup ions does indeed shift the peak of the focusing cone relative to the progenitor neutral atoms and this shift provides fundamental information on the scattering of pickup ions inside 1 au.

C-reactive protein levels and risk of disabling dementia with and without stroke in Japanese: the Circulatory Risk in Communities Study (CIRCS).

PubMed

Chei, Choy-Lye; Yamagishi, Kazumasa; Ikeda, Ai; Noda, Hiroyuki; Maruyama, Minako; Cui, Renzhe; Imano, Hironori; Kiyama, Masahiko; Kitamura, Akihiko; Asada, Takashi; Iso, Hiroyasu

2014-10-01

Studies have shown that elevated high-sensitivity C-reactive protein (hs-CRP) predicts stroke, which is a risk factor for dementia. It remains, however, unclear whether hs-CRP increases risk of dementia. A prospective nested case-control study of Japanese 40-69 years of age was conducted using frozen serum samples collected from approximately 7531men and women who participated in cardiovascular risk surveys from 1984 to 1994 in one community and 1989-1995 in another community under the Circulatory Risk in Communities Study (CIRCS). Two control subjects per case were matched by sex, age, community, and year of serum storage. The hs-CRP was measured using a latex particle-enhanced immunonephelometric assay. Between 1999 and 2013, we identified 275 disabling dementia cases (96 cases with history of stroke and 179 without it). There was a positive association between hs-CRP levels and risk of dementia with history of stroke. No significant association was observed between hs-CRP levels and risk of dementia without history of stroke. After adjustment for hypertension, diabetes and other confounding variables, the positive association remained statistically significant. The multivariable odds ratios associated with 1-SD increment of log hs-CRP were 1.02 (0.87-1.20) for total dementia, 1.35 (1.02-1.79) for dementia with history of stroke, and 0.89 (0.72-1.10) for dementia without history of stroke. Elevated hs-CRP levels were associated with increased risk of disabling dementia in individuals with history of stroke but not in those without it. Copyright © 2014 Elsevier Ireland Ltd. All rights reserved.

Comparison between Radiation-Hydrodynamic Simulation of Supercritical Accretion Flows and a Steady Model with Outflows

NASA Astrophysics Data System (ADS)

Jiao, Cheng-Liang; Mineshige, Shin; Takeuchi, Shun; Ohsuga, Ken

2015-06-01

We apply our two-dimensional (2D), radially self-similar steady-state accretion flow model to the analysis of hydrodynamic simulation results of supercritical accretion flows. Self-similarity is checked and the input parameters for the model calculation, such as advective factor and heat capacity ratio, are obtained from time-averaged simulation data. Solutions of the model are then calculated and compared with the simulation results. We find that in the converged region of the simulation, excluding the part too close to the black hole, the radial distributions of azimuthal velocity {{v}φ }, density ρ and pressure p basically follow the self-similar assumptions, i.e., they are roughly proportional to {{r}-0.5}, {{r}-n}, and {{r}-(n+1)}, respectively, where n∼ 0.85 for the mass injection rate of 1000{{L}E}/{{c}2}, and n∼ 0.74 for 3000{{L}E}/{{c}2}. The distribution of vr and {{v}θ } agrees less with self-similarity, possibly due to convective motions in the rθ plane. The distribution of velocity, density, and pressure in the θ direction obtained by the steady model agrees well with the simulation results within the calculation boundary of the steady model. Outward mass flux in the simulations is overall directed toward a polar angle of 0.8382 rad (∼ 48\\buildrel{\\circ}\\over{.} 0) for 1000{{L}E}/{{c}2} and 0.7852 rad (∼ 43\\buildrel{\\circ}\\over{.} 4) for 3000{{L}E}/{{c}2}, and ∼94% of the mass inflow is driven away as outflow, while outward momentum and energy fluxes are focused around the polar axis. Parts of these fluxes lie in the region that is not calculated by the steady model, and special attention should be paid when the model is applied.

Modeling the Surface Temperature of Earth-like Planets

NASA Astrophysics Data System (ADS)

Vladilo, Giovanni; Silva, Laura; Murante, Giuseppe; Filippi, Luca; Provenzale, Antonello

2015-05-01

We introduce a novel Earth-like planet surface temperature model (ESTM) for habitability studies based on the spatial-temporal distribution of planetary surface temperatures. The ESTM adopts a surface energy balance model (EBM) complemented by: radiative-convective atmospheric column calculations, a set of physically based parameterizations of meridional transport, and descriptions of surface and cloud properties more refined than in standard EBMs. The parameterization is valid for rotating terrestrial planets with shallow atmospheres and moderate values of axis obliquity (ɛ ≲ 45{}^\\circ ). Comparison with a 3D model of atmospheric dynamics from the literature shows that the equator-to-pole temperature differences predicted by the two models agree within ≈ 5 K when the rotation rate, insolation, surface pressure and planet radius are varied in the intervals 0.5≲ {Ω }/{{{Ω }}\\oplus }≲ 2, 0.75≲ S/{{S}\\circ }≲ 1.25, 0.3≲ p/(1 bar)≲ 10, and 0.5≲ R/{{R}\\oplus }≲ 2, respectively. The ESTM has an extremely low computational cost and can be used when the planetary parameters are scarcely known (as for most exoplanets) and/or whenever many runs for different parameter configurations are needed. Model simulations of a test-case exoplanet (Kepler-62e) indicate that an uncertainty in surface pressure within the range expected for terrestrial planets may impact the mean temperature by ˜ 60 K. Within the limits of validity of the ESTM, the impact of surface pressure is larger than that predicted by uncertainties in rotation rate, axis obliquity, and ocean fractions. We discuss the possibility of performing a statistical ranking of planetary habitability taking advantage of the flexibility of the ESTM.

Reporting of sex as a variable in cardiovascular studies using cultured cells

PubMed Central

2011-01-01

Background Chromosomal complement, including that provided by the sex chromosomes, influences expression of proteins and molecular signaling in every cell. However, less than 50% of the scientific studies published in 2009 using experimental animals reported sex as a biological variable. Because every cell has a sex, we conducted a literature review to determine the extent to which sex is reported as a variable in cardiovascular studies on cultured cells. Methods Articles from 10 cardiovascular journals with high impact factors (Circulation, J Am Coll Cardiol, Eur Heart J, Circ Res, Arterioscler Thromb Vasc Biol, Cardiovasc Res, J Mol Cell Cardiol, Am J Physiol Heart Circ Physiol, J Heart Lung Transplant and J Cardiovasc Pharmacol) and published in 2010 were searched using terms 'cultured' and 'cells' in any order to determine if the sex of those cells was reported. Studies using established cell lines were excluded. Results Using two separate search strategies, we found that only 25 of 90 articles (28%) and 20 of 101 articles (19.8%) reported the sex of cells. Of those reporting the sex of cells, most (68.9%; n = 31) used only male cells and none used exclusively female cells. In studies reporting the sex of cells of cardiovascular origin, 40% used vascular smooth-muscle cells, and 30% used stem/progenitor cells. In studies using cells of human origin, 35% did not report the sex of those cells. None of the studies using neonatal cardiac myocytes reported the sex of those cells. Conclusions The complement of sex chromosomes in cells studied in culture has the potential to affect expression of proteins and 'mechanistic' signaling pathways. Therefore, consistent with scientific excellence, editorial policies should require reporting sex of cells used in in vitro experiments. PMID:22060014

[Left atrial function and left atrial appendage flow velocity in hypertrophic cardiomyopathy: comparison of patients with and without paroxysmal atrial fibrillation].

PubMed

Akasaka, K; Kawashima, E; Shiokoshi, T; Ishii, Y; Hasebe, N; Kikuchi, K

1998-07-01

The involvement of left atrial (LA) appendage flow velocity in reduced left atrial function was investigated in 24 patients with hypertrophic cardiomyopathy, who retained sinus rhythm at the examination. Patients were divided into 11 with a history of paroxysmal atrial fibrillation [PAf(+)] and 13 without such history [PAf(-)]. Transthoracic echocardiography was performed to evaluate LA fractional shortening (LA%FS) and mean velocity of circumferential LA fiber shortening (LAmVcf), as contractile functions of the left atrium at the phase of active atrial contraction. Transesophageal echocardiographic Doppler examination was performed in all patients to measure the LA appendage velocity. In all patients, significant positive correlations were observed between the LA appendage velocity and LA%FS (r = 0.50, p < 0.05) or LAmVcf (r = 0.82, p < 0.001). LAmVcf and LA appendage velocity in patients with paroxysmal fibrillation were significantly lower than in those without (0.84 +/- 0.15 vs 1.28 +/- 0.37 circ/sec, 44 +/- 12 vs 65 +/- 20 cm/sec, both p < 0.01), whereas LA diameter was greater in the former compared to the latter (45 +/- 5 vs 38 +/- 5 mm, p < 0.01). LAmVcf and LA appendage velocity were low in four patients with cerebral infarction or transient cerebral ischemic attack (LAmVcf < 1.0 circ/sec, LA appendage velocity < or = 40 cm/sec). Importantly, all these patients had a history of paroxysmal fibrillation. These results indicate that there is a close relationship between LA appendage velocity and LA contractile function in patients with hypertrophic cardiomyopathy with paroxysmal atrial fibrilation, and these patients have potential risk of cerebral infarction.

The Longitudinal Evolution of Equatorial Coronal Holes

NASA Astrophysics Data System (ADS)

Krista, Larisza D.; McIntosh, Scott W.; Leamon, Robert J.

2018-04-01

In 2011, three satellites—the Solar-Terrestrial RElations Observatory A & B, and the Solar Dynamics Observatory (SDO)—were in a unique spatial alignment that allowed a 360° view of the Sun. This alignment lasted until 2014, the peak of solar cycle 24. Using extreme ultraviolet images and Hovmöller diagrams, we studied the lifetimes and propagation characteristics of coronal holes (CHs) in longitude over several solar rotations. Our initial results show at least three distinct populations of “low-latitude” or “equatorial” CHs (below 65^\\circ latitude). One population rotates in retrograde direction and coincides with a group of long-lived (over sixty days) CHs in each hemisphere. These are typically located between 30° and 55^\\circ , and display velocities of ∼55 m s‑1 slower than the local differential rotation rate. A second, smaller population of CHs rotate prograde, with velocities between ∼20 and 45 m s‑1. This population is also long-lived, but observed ±10° from the solar equator. A third population of CHs are short-lived (less than two solar rotations), and they appear over a wide range of latitudes (±65°) and exhibit velocities between ‑140 and 80 m s‑1. The CH “butterfly diagram” we developed shows a systematic evolution of the longer-lived holes; however, the sample is too short in time to draw conclusions about possible connections to dynamo-related phenomena. An extension of the present work to the 22 years of the combined SOHO–SDO archives is necessary to understand the contribution of CHs to the decadal-scale evolution of the Sun.

Present-day Galactic Evolution: Low-metallicity, Warm, Ionized Gas Inflow Associated with High-velocity Cloud Complex A

NASA Astrophysics Data System (ADS)

Barger, K. A.; Haffner, L. M.; Wakker, B. P.; Hill, Alex. S.; Madsen, G. J.; Duncan, A. K.

2012-12-01

The high-velocity cloud Complex A is a probe of the physical conditions in the Galactic halo. The kinematics, morphology, distance, and metallicity of Complex A indicate that it represents new material that is accreting onto the Galaxy. We present Wisconsin Hα Mapper kinematically resolved observations of Complex A over the velocity range of -250 to -50 km s-1 in the local standard of rest reference frame. These observations include the first full Hα intensity map of Complex A across (\\mathit {l, b}) = (124{^\\circ }, 18{^\\circ }) to (171°, 53°) and deep targeted observations in Hα, [S II] λ6716, [N II] λ6584, and [O I] λ6300 toward regions with high H I column densities, background quasars, and stars. The Hα data imply that the masses of neutral and ionized material in the cloud are similar, both being greater than 106 M ⊙. We find that the Bland-Hawthorn & Maloney model for the intensity of the ionizing radiation near the Milky Way is consistent with the known distance of the high-latitude part of Complex A and an assumed cloud geometry that puts the lower-latitude parts of the cloud at a distance of 7-8 kpc. This compatibility implies a 5% ionizing photon escape fraction from the Galactic disk. We also provide the nitrogen and sulfur upper abundance solutions for a series of temperatures, metallicities, and cloud configurations for purely photoionized gas; these solutions are consistent with the sub-solar abundances found by previous studies, especially for temperatures above 104 K or for gas with a high fraction of singly ionized nitrogen and sulfur.

Local H i emissivity measured with FERMI-LAT and implications for Cosmic-ray spectra

DOE Office of Scientific and Technical Information (OSTI.GOV)

Casandjian, Jean -Marc

Cosmic-ray (CR) electrons and nuclei interact with the Galactic interstellar gas and produce high-energy γ-rays. The γ-ray emission rate per hydrogen atom, called emissivity, provides a unique indirect probe of the CR flux. We present the measurement and the interpretation of the emissivity in the solar neighborhood for γ-ray energy from 50 MeV to 50 GeV. We analyzed a subset of 4 yr of observations from the Large Area Telescope (LAT) aboard the Fermi Gamma-ray Space Telescope ( Fermi) restricted to absolute latitudesmore » $$10^\\circ \\lt | b| \\lt 70^\\circ $$. From a fit to the LAT data including atomic, molecular, and ionized hydrogen column density templates, as well as a dust optical depth map, we derived the emissivities, the molecular hydrogen–to–CO conversion factor $${X}_{\\mathrm{CO}}=(0.902\\pm 0.007)\\times {10}^{20}$$ cm–2 (K km s–1)–1, and the dust-to-gas ratio $${X}_{\\mathrm{DUST}}=(41.4\\pm 0.3)\\times {10}^{20}$$ cm–2 mag–1. Moreover, we detected for the first time γ-ray emission from ionized hydrogen. We compared the extracted emissivities to those calculated from γ-ray production cross sections and to CR spectra measured in the heliosphere. We observed that the experimental emissivities are reproduced only if the solar modulation is accounted for. This provides a direct detection of solar modulation observed previously through the anticorrelation between CR fluxes and solar activity. Lastly, we fitted a parameterized spectral form to the heliospheric CR observations and to the Fermi-LAT emissivity and obtained compatible local interstellar spectra for proton and helium kinetic energy per nucleon between between 1 and 100 GeV and for electron–positrons between 0.1 and 100 GeV.« less

Local H i emissivity measured with FERMI-LAT and implications for Cosmic-ray spectra

DOE PAGES

Casandjian, Jean -Marc

2015-06-20

Cosmic-ray (CR) electrons and nuclei interact with the Galactic interstellar gas and produce high-energy γ-rays. The γ-ray emission rate per hydrogen atom, called emissivity, provides a unique indirect probe of the CR flux. We present the measurement and the interpretation of the emissivity in the solar neighborhood for γ-ray energy from 50 MeV to 50 GeV. We analyzed a subset of 4 yr of observations from the Large Area Telescope (LAT) aboard the Fermi Gamma-ray Space Telescope ( Fermi) restricted to absolute latitudesmore » $$10^\\circ \\lt | b| \\lt 70^\\circ $$. From a fit to the LAT data including atomic, molecular, and ionized hydrogen column density templates, as well as a dust optical depth map, we derived the emissivities, the molecular hydrogen–to–CO conversion factor $${X}_{\\mathrm{CO}}=(0.902\\pm 0.007)\\times {10}^{20}$$ cm–2 (K km s–1)–1, and the dust-to-gas ratio $${X}_{\\mathrm{DUST}}=(41.4\\pm 0.3)\\times {10}^{20}$$ cm–2 mag–1. Moreover, we detected for the first time γ-ray emission from ionized hydrogen. We compared the extracted emissivities to those calculated from γ-ray production cross sections and to CR spectra measured in the heliosphere. We observed that the experimental emissivities are reproduced only if the solar modulation is accounted for. This provides a direct detection of solar modulation observed previously through the anticorrelation between CR fluxes and solar activity. Lastly, we fitted a parameterized spectral form to the heliospheric CR observations and to the Fermi-LAT emissivity and obtained compatible local interstellar spectra for proton and helium kinetic energy per nucleon between between 1 and 100 GeV and for electron–positrons between 0.1 and 100 GeV.« less

Blowing in the Milky Way Wind: Neutral Hydrogen Clouds Tracing the Galactic Nuclear Outflow

NASA Astrophysics Data System (ADS)

Di Teodoro, Enrico M.; McClure-Griffiths, N. M.; Lockman, Felix J.; Denbo, Sara R.; Endsley, Ryan; Ford, H. Alyson; Harrington, Kevin

2018-03-01

We present the results of a new sensitive survey of neutral hydrogen above and below the Galactic Center with the Green Bank Telescope. The observations extend up to Galactic latitude | b| < 10^\\circ with an effective angular resolution of 9.‧5 and an average rms brightness temperature noise of 40 mK in a 1 {km} {{{s}}}-1 channel. The survey reveals the existence of a population of anomalous high-velocity clouds extending up to heights of about 1.5 kpc from the Galactic plane and showing no signature of Galactic rotation. These clouds have local standard of rest velocities | {V}LSR}| ≲ 360 {km} {{{s}}}-1, and assuming a Galactic Center origin, they have sizes of a few tens of parsec and neutral hydrogen masses spanning 10{--}{10}5 {M}ȯ . Accounting for selection effects, the cloud population is symmetric in longitude, latitude, and V LSR. We model the cloud kinematics in terms of an outflow expanding from the Galactic Center and find the population consistent with being material moving with radial velocity {V}{{w}}≃ 330 {km} {{{s}}}-1 distributed throughout a bicone with opening angle α > 140^\\circ . This simple model implies an outflow luminosity {L}{{w}}> 3× {10}40 erg s‑1 over the past 10 Myr, consistent with star formation feedback in the inner region of the Milky Way, with a cold gas mass-loss rate ≲ 0.1 {{M}ȯ {yr}}-1. These clouds may represent the cold gas component accelerated in the nuclear wind driven by our Galaxy, although some of the derived properties challenge current theoretical models of the entrainment process.

The Viewing Geometry of Brown Dwarfs Influences Their Observed Colors and Variability Amplitudes

NASA Astrophysics Data System (ADS)

Vos, Johanna M.; Allers, Katelyn N.; Biller, Beth A.

2017-06-01

In this paper we study the full sample of known Spitzer [3.6 μm] and J-band variable brown dwarfs. We calculate the rotational velocities, v\\sin I, of 16 variable brown dwarfs using archival Keck NIRSPEC data and compute the inclination angles of 19 variable brown dwarfs. The results obtained show that all objects in the sample with mid-IR variability detections are inclined at an angle > 20^\\circ , while all objects in the sample displaying J-band variability have an inclination angle > 35^\\circ . J-band variability appears to be more affected by inclination than Spitzer [3.6 μm] variability, and is strongly attenuated at lower inclinations. Since J-band observations probe deeper into the atmosphere than mid-IR observations, this effect may be due to the increased atmospheric path length of J-band flux at lower inclinations. We find a statistically significant correlation between the color anomaly and inclination of our sample, where field objects viewed equator-on appear redder than objects viewed at lower inclinations. Considering the full sample of known variable L, T, and Y spectral type objects in the literature, we find that the variability properties of the two bands display notably different trends that are due to both intrinsic differences between bands and the sensitivity of ground-based versus space-based searches. However, in both bands we find that variability amplitude may reach a maximum at ˜7-9 hr periods. Finally, we find a strong correlation between color anomaly and variability amplitude for both the J-band and mid-IR variability detections, where redder objects display higher variability amplitudes.

A Census of Large-scale (≥10 PC), Velocity-coherent, Dense Filaments in the Northern Galactic Plane: Automated Identification Using Minimum Spanning Tree

NASA Astrophysics Data System (ADS)

Wang, Ke; Testi, Leonardo; Burkert, Andreas; Walmsley, C. Malcolm; Beuther, Henrik; Henning, Thomas

2016-09-01

Large-scale gaseous filaments with lengths up to the order of 100 pc are on the upper end of the filamentary hierarchy of the Galactic interstellar medium (ISM). Their association with respect to the Galactic structure and their role in Galactic star formation are of great interest from both an observational and theoretical point of view. Previous “by-eye” searches, combined together, have started to uncover the Galactic distribution of large filaments, yet inherent bias and small sample size limit conclusive statistical results from being drawn. Here, we present (1) a new, automated method for identifying large-scale velocity-coherent dense filaments, and (2) the first statistics and the Galactic distribution of these filaments. We use a customized minimum spanning tree algorithm to identify filaments by connecting voxels in the position-position-velocity space, using the Bolocam Galactic Plane Survey spectroscopic catalog. In the range of 7\\buildrel{\\circ}\\over{.} 5≤slant l≤slant 194^\\circ , we have identified 54 large-scale filaments and derived mass (˜ {10}3{--}{10}5 {M}⊙ ), length (10-276 pc), linear mass density (54-8625 {M}⊙ pc-1), aspect ratio, linearity, velocity gradient, temperature, fragmentation, Galactic location, and orientation angle. The filaments concentrate along major spiral arms. They are widely distributed across the Galactic disk, with 50% located within ±20 pc from the Galactic mid-plane and 27% run in the center of spiral arms. An order of 1% of the molecular ISM is confined in large filaments. Massive star formation is more favorable in large filaments compared to elsewhere. This is the first comprehensive catalog of large filaments that can be useful for a quantitative comparison with spiral structures and numerical simulations.

Detailed Analysis of the Asteroid Pair (6070) Rheinland and (54827) 2001 NQ8

NASA Astrophysics Data System (ADS)

Vokrouhlický, David; Pravec, Petr; Ďurech, Josef; Hornoch, Kamil; Kušnirák, Peter; Galád, Adrián; Vraštil, Jan; Kučáková, Hana; Pollock, Joseph T.; Ortiz, Jose Luis; Morales, Nicolas; Gaftonyuk, Ninel M.; Pray, Donald P.; Krugly, Yurij N.; Inasaridze, Raguli Ya.; Ayvazian, Vova R.; Molotov, Igor E.; Colazo, Carlos A.

2017-06-01

The existence of asteroid pairs, two bodies on similar heliocentric orbits, reveals an ongoing process of rotational fission among asteroids. This newly found class of objects has not been studied in detail yet. Here we choose asteroids (6070) Rheinland and (54827) 2001 NQ8, the most suitable pair for an in-depth analysis. First, we use available optical photometry to determine their rotational state and convex shapes. Rotational pole of Rheinland is very near the south ecliptic pole with a latitude uncertainty of about 10°. There are two equivalent solutions for the pole of 2001 NQ8, either (72°, -49°) or (242°, -46°) (ecliptic longitude and latitude). In both cases, the longitude values have about 10° uncertainty and the latitude values have about 15° uncertainty (both 3σ uncertainties). The sidereal rotation period of 2001 NQ8 is 5.877186 ± 0.000002 hr. Second, we construct a precise numerical integrator to determine the past state vectors of the pair’s components, namely their heliocentric positions and velocities, and orientation of their spin vectors. Using this new tool, we investigate the origin of the (6070) Rheinland and (54827) 2001 NQ8 pair. We find a formal age solution of 16.34 ± 0.04 kyr. This includes effects of the most massive objects in the asteroid belt (Ceres, Pallas, and Vesta), but the unaccounted gravitational perturbations from other asteroids may imply that the realistic age uncertainty is slightly larger than its formal value. Analyzing results from our numerical simulation to 250 kya, we argue against a possibility that this pair would allow an older age. Initial spin vectors of the two asteroids, at the moment of their separation, were not collinear, but tilted by 38^\\circ +/- 12^\\circ .

The Electromagnetic Counterpart of the Binary Neutron Star Merger LIGO/Virgo GW170817. V. Rising X-Ray Emission from an Off-axis Jet

DOE Office of Scientific and Technical Information (OSTI.GOV)

Margutti, Raffaella; Berger, E.; Fong, W.

Here, we report the discovery of rising X-ray emission from the binary neutron star merger event GW170817. This is the first detection of X-ray emission from a gravitational-wave (GW) source. Observations acquired with the Chandra X-ray Observatory ( CXO) atmore » $$t\\approx 2.3$$ days post-merger reveal no significant emission, with $${L}_{x}\\lesssim 3.2\\times {10}^{38}\\,\\mathrm{erg}\\,{{\\rm{s}}}^{-1}$$ (isotropic-equivalent). Continued monitoring revealed the presence of an X-ray source that brightened with time, reaching $${L}_{x}\\approx 9\\times {10}^{38}\\,\\mathrm{erg}\\,{{\\rm{s}}}^{-1}$$ at $$\\approx 15.1$$ days post-merger. We interpret these findings in the context of isotropic and collimated relativistic outflows (both on- and off-axis). We find that the broadband X-ray to radio observations are consistent with emission from a relativistic jet with kinetic energy $${E}_{k}\\sim {10}^{49-50}\\,\\mathrm{erg}$$, viewed off-axis with $${\\theta }_{\\mathrm{obs}}\\sim 20^\\circ \\mbox{--}40^\\circ $$. Our models favor a circumbinary density $$n\\sim {10}^{-4}\\mbox{--}{10}^{-2}\\,{\\mathrm{cm}}^{-3}$$, depending on the value of the microphysical parameter $${\\epsilon }_{B}={10}^{-4}\\mbox{--}{10}^{-2}$$. A central-engine origin of the X-ray emission is unlikely. Future X-ray observations at $$t\\gtrsim 100$$ days, when the target will be observable again with the CXO, will provide additional constraints to solve the model degeneracies and test our predictions. Our inferences on $${\\theta }_{\\mathrm{obs}}$$ are testable with GW information on GW170817 from advanced LIGO/Virgo on the binary inclination.« less

A comparison of capillary hydraulic conductivities in postural and locomotor muscle.

PubMed

McDonagh, P F; Gore, R W

1982-09-01

In a comparative skeletal muscle study Folkow and Halicka (Microvasc. Res. 1: 1-14, 1968) reported that the capillary filtration coefficient (CFC) of postural (red) muscle was two times the CFC of locomotor (white) muscle. It was concluded that the twofold difference in CFC was due solely to a difference in the perfused capillary surface areas (Sf) of red vs. white muscle. However, CFC is the product of capillary hydraulic conductivity (LP) and Sf. Hence their conclusion assumed that the average LP of red muscle capillaries is exactly equal to the average LP of white muscle capillaries. The following study was undertaken to test the validity of this assumption. The microocclusion procedures and analytical model described by Lee et al. (Circ. Res. 28: 358-370, 1971) and Gore [Am. J. Physiol. 242 (Heart Circ. Physiol. 11): H268-H287, 1982] were used to determine LP. Independent measurements of LP were recorded from single capillaries in red, anterior latissimus dorsi (ALD) and white, posterior latissimus dorsi (PLD) muscles of chickens anesthetized with L.A. Thesia. We found that the mean capillary hydraulic conductivity in postural muscle [(LP)ALD = 0.20 +/- 0.06 (SE) micrometers . s-1 . cmH2O-1 (n = 11)] was significantly different from the mean capillary hydraulic conductivity in locomotor muscle [(LP)PLD = 0.061 +/- 0.01 micrometers . s-1 . cmH2O-1 (n = 14)] (P less than 0.05). These results provide direct evidence that observed differences in red vs. white muscle CFC's may not be due solely to different perfused capillary surface areas but may also be due to differences in capillary hydraulic conductivity.

Single-Coil Defibrillator Leads Yield Satisfactory Defibrillation Safety Margin in Hypertrophic Cardiomyopathy.

PubMed

Okamura, Hideo; Friedman, Paul A; Inoue, Yuko; Noda, Takashi; Aiba, Takeshi; Yasuda, Satoshi; Ogawa, Hisao; Kamakura, Shiro; Kusano, Kengo; Espinosa, Raul E

2016-09-23

Single-coil defibrillator leads have gained favor because of their potential ease of extraction. However, a high defibrillation threshold remains a concern in patients with hypertrophic cardiomyopathy (HCM), and in many cases, dual-coil leads have been used for this patient group. There is little data on using single-coil leads for HCM patients. We evaluated 20 patients with HCM who received an implantable cardioverter-defibrillator (ICD) on the left side in combination with a dual-coil lead. Two sets of defibrillation tests were performed in each patient, one with the superior vena cava (SVC) coil "on" and one with the SVC coil "off". ICDs were programmed to deliver 25 joules (J) for the first attempt followed by maximum energy (35 J or 40 J). Shock impedance and shock pulse width at 25 J in each setting as well as the results of the shock were analyzed. All 25-J shocks in both settings successfully terminated ventricular fibrillation. However, shock impedance and pulse width increased substantially with the SVC coil programmed "off" compared with "on" (66.4±6.1 ohm and 14.0±1.3 ms "off" vs. 41.9±5.0 ohm and 9.3±0.8 ms "on", P<0.0001 respectively). Biphasic 25-J shocks with the SVC coil 'off' successfully terminated ventricular fibrillation in HCM patients, indicating a satisfactory safety margin for 35-J devices. Single-coil leads appear appropriate for left-sided implantation in this patient group. (Circ J 2016; 80: 2199-2203).

WHAT? A Large Reflective Schmidt Telescope for the Antarctic Plateau

NASA Astrophysics Data System (ADS)

Saunders, W.; McGrath, A. J.

We present a design concept for WHAT the Wide-field Antarctic Horizontal Telescope to take advantage of the unique possibilities of Antarctica for both optical and near infrared astronomy. The design is an 8 metre, wide-field, fixed-axis, all-reflective, f/4 Schmidt telescope. Prime and Cassegrain (or Gregorian) foci are provided, giving plate scales 150-1500 μ m/'', over fields of view 3'-3circ. Diffraction limited, NGSAO-corrected K_dark images are possible over arc-minute sized fields, over most of the sky. The sensitivity, resolution, field of view and cost all compare favourably with current or proposed space or ground-based telescopes.

RXTE Detection of the Spin Period of Swift J1822.3-1606

NASA Astrophysics Data System (ADS)

Gogus, Ersin; Kouveliotou, Chryssa; Strohmayer, Tod

2011-07-01

RXTE/PCA observed the new source, Swift J1822.3-1606 (Cummings et al. GCN Circ. 12159) on 2011 July 16, for 6.7 ks. We performed a timing analysis on the barycentered data and detected a coherent pulsation at 0.1185149(2) Hz corresponding to 8.4377585 s. Pulsations are clearly visible in the PCA light curve. The peak-to-peak pulsed amplitude in the 2-10 keV band is 0.41. This pulsed fraction is highly unlikely from an SGR source, and very reminiscent of the outburst onset of Swift J1626.6-5156 (Palmer et al.

Focal Reduction in Cardiac 123I-Metaiodobenzylguanidine Uptake in Patients With Anderson-Fabry Disease.

PubMed

Yamamoto, Saori; Suzuki, Hideaki; Sugimura, Koichiro; Tatebe, Shunsuke; Aoki, Tatsuo; Miura, Masanobu; Yaoita, Nobuhiro; Sato, Haruka; Kozu, Katuya; Ota, Hideki; Takanami, Kentaro; Takase, Kei; Shimokawa, Hiroaki

2016-11-25

It remains to be elucidated whether cardiac sympathetic nervous activity is impaired in patients with Anderson-Fabry disease (AFD).Methods and Results:We performed 123 I-meta-iodobenzylguanidine (MIBG) scintigraphy and gadolinium-enhanced cardiovascular magnetic resonance (CMR) in 5 AFD patients. MIBG uptake in the inferolateral wall, where wall thinning and delayed enhancement were noted on CMR, was significantly lower compared with the anteroseptal wall. The localized reduction in MIBG uptake was also noted in 2 patients with no obvious abnormal findings on CMR. Cardiac sympathetic nervous activity is impaired in AFD before development of structural myocardial abnormalities. (Circ J 2016; 80: 2550-2551).

Maps and diagrams showing acoustic and textural characteristics and distribution of bottom sedimentary environments, Boston Harbor and Massachusetts Bay

USGS Publications Warehouse

Knebel, Harley J.; Circe, Ronald C.

1995-01-01

This report illustrates, describes, and briefly discusses the acoustic and textural characteristics and the distribution of bottom sedimentary environments in Boston Harbor and Massachusetts Bay. The study is an outgrowth of a larger research program designed to understand the regional processes that distribute sediments and related contaminants in the area. The report highlights the major findings presented in recent papers by Knebel and others (1991), Knebel, (1993), and Knebel and Circe (1995). The reader is urged to consult the full text of these earlier papers for a more definitive treatment of the data and for appropriate supporting references.

Galaxies in ΛCDM with Halo Abundance Matching: Luminosity-Velocity Relation, Baryonic Mass-Velocity Relation, Velocity Function, and Clustering

NASA Astrophysics Data System (ADS)

Trujillo-Gomez, Sebastian; Klypin, Anatoly; Primack, Joel; Romanowsky, Aaron J.

2011-11-01

It has long been regarded as difficult if not impossible for a cosmological model to account simultaneously for the galaxy luminosity, mass, and velocity distributions. We revisit this issue using a modern compilation of observational data along with the best available large-scale cosmological simulation of dark matter (DM). We find that the standard cosmological model, used in conjunction with halo abundance matching (HAM) and simple dynamical corrections, fits—at least on average—all basic statistics of galaxies with circular velocities V circ > 80 km s-1 calculated at a radius of ~10 kpc. Our primary observational constraint is the luminosity-velocity (LV) relation—which generalizes the Tully-Fisher and Faber-Jackson relations in allowing all types of galaxies to be included, and provides a fundamental benchmark to be reproduced by any theory of galaxy formation. We have compiled data for a variety of galaxies ranging from dwarf irregulars to giant ellipticals. The data present a clear monotonic LV relation from ~50 km s-1 to ~500 km s-1, with a bend below ~80 km s-1 and a systematic offset between late- and early-type galaxies. For comparison to theory, we employ our new ΛCDM "Bolshoi" simulation of DM, which has unprecedented mass and force resolution over a large cosmological volume, while using an up-to-date set of cosmological parameters. We use HAM to assign rank-ordered galaxy luminosities to the DM halos, a procedure that automatically fits the empirical luminosity function and provides a predicted LV relation that can be checked against observations. The adiabatic contraction of DM halos in response to the infall of the baryons is included as an optional model ingredient. The resulting predictions for the LV relation are in excellent agreement with the available data on both early-type and late-type galaxies for the luminosity range from Mr = -14 to Mr = -22. We also compare our predictions for the "cold" baryon mass (i.e., stars and cold gas) of galaxies as a function of circular velocity with the available observations, again finding a very good agreement. The predicted circular velocity function (VF) is also in agreement with the galaxy VF from 80 to 400 km s-1, using the HIPASS survey for late-type galaxies and Sloan Digital Sky Survey (SDSS) for early-type galaxies. However, in accord with other recent results, we find that the DM halos with V circ < 80 km s-1 are much more abundant than observed galaxies with the same V circ. Finally, we find that the two-point correlation function of bright galaxies in our model matches very well the results from the final data release of the SDSS, especially when a small amount of scatter is included in the HAM prescription.

Preparation and Characterization of RF Sputtered BARIUM(2) SILICON(2) Titanium OXYGEN(8) Thin Films

NASA Astrophysics Data System (ADS)

Li, Yi.

Thin films of barium titanium silicate ( Ba_2Si_2TiO_8) are grown on crystalline (100) Si at substrate temperatures raging from 750 to 955^circC by the radio-frequency triode sputtering technique. The chemical composition, microstructure, physical properties, and growth conditions of the deposited films are investigated by dc and high-frequency dielectric measurements, wavelength dispersive and energy dispersive x-ray spectrometries, x-ray diffraction spectrometry, and optical and scanning electron microscopies. The results of the x-ray diffraction analysis show that the Ba_2Si_2TiO _8 films deposited at the optimum condition of substrate temperature of 845^circ C, 4 cm source-substance distance, 50 W rf power, and 1.2 times 10^ {-3} torr pressure of Ar, are highly c -axis oriented. The as-deposited films are smooth, glossy, polycrystalline films, exhibiting a bulk resistivity range of 10^6 Omegacdotcm, and an isotropic surface resistivity of 1.5 times 10^3 Omegacdot cm. The relative dielectric constant is 0.05, and the dielectric loss is lower than 1.0, in the frequency band 9 ~ 1000 MHz. The high-frequency impedance of BST films, which is typical for piezoelectric materials, gives a minimum impedance frequency of 9.0 MHz and a series resonant frequency of 9.5 MHz. Optical and SEM observations show that the film texture is dependent on the substrate conditions. The non-liquid-like grain coalescence of the Ba_2Si_2TiO _8 grains is characteristic of a strong film -substrate interaction. The grain growth kinetics obtained from "short-time" sputtering gives an initial lateral grain growth rate of 770 nm/min at 845^circ C, which decreases with the grain size. The initial film growth rate in the direction of thickness, measured from SEM micrographs, is 1.95 nm/min, and decreases with sputtering time. The activation free energy for grain growth is 359 +/- 30 KJ/mol for the initial stage, decreasing to 148 +/- 20 KJ/mol for the final stage. The variation of the grain growth rate and the activation energy with grain size is the result of a combined nucleation and growth mechanism in the initial stage of the film growth, and a coalescence -dominated growth mechanism at longer sputtering time and at higher temperature. Film orientation is sensitive to the supersaturation adjacent to the film surface, which depends on the source-substrate distance and substrate temperature. The effect of the substrate temperature on the orientation of the film is investigated over a wide temperature range using (100) and (111) Si substrates. Several orientations for the BST films, including an amorphous state, are obtained with increasing substrate temperature. This is discussed in relation to the atomic plane density and the energetics for the deposition process.

Control of Polarization of Vertical-Cavity Surface - Lasers

NASA Astrophysics Data System (ADS)

Sun, Decai

1995-01-01

To date, most vertical-cavity surface-emitting lasers (VCSELs) have been fabricated from structures grown on GaAs (InP) substrates oriented in the (001) crystallographic axis. For the most part, these devices have exhibited linear, but random polarization states with no definite relationship to the in-plane crystallographic axes. The control of the polarization states of these devices is important for polarization-sensitive applications. Such applications include magneto-optic disk recording and coherent detection in advanced communication systems. In this thesis, a novel approach for controlling the polarization eigen-states of VCSELs is investigated. The approach utilizes anisotropic optical properties found in quantum wells (QW) oriented in directions other than the (001) to stabilize their polarization states. Specifically, the (110) direction is chosen for this work. An analysis of the in-plane optical matrix element connected with the gain coefficient of (In,Ga)As/GaAs QW structures grown on (110) GaAs substrates is conducted. It is found that the in-plane gain distribution is elliptically anisotropic--with a maximum directed along the (110) - (110) crystallographic axis. The design and growth of (In,Ga)As/GaAs QW VCSEL structures is studied in this work. The transition wavelengths of the (001) - and (110) -oriented (In,Ga)As/GaAs QW structures are calculated using a finite QW model. Distributed Bragg reflector mirrors consisting of GaAs/AlAs quarter wave layers are modeled using a characteristic matrix method. Threshold gain, internal and differential quantum efficiencies are analyzed. The growth of III-V compounds on (110) GaAs substrates by molecular beam epitaxy is investigated. High quality materials are successfully grown on the misoriented (110) GaAs substrates tilted by 6^circ toward the (111)B surface. (In,Ga)As/GaAs QW VCSEL structures are grown on (001) and (110) GaAs substrates. (In,Ga)As/GaAs QW VCSELs are fabricated from structures grown on the (001) and (110) surfaces. Experimental characterization shows that the devices fabricated from the (110) surface exhibit stable, well-defined polarization states at room temperature; this is in contrast to the random polarization characteristics observed from the VCSELs fabricated from the (001) surface. This stability is believed to be a consequence of the predicted anisotropic gain distribution on the (110) surface. Of the two orthogonal eigen-polarizations observed, the one with the higher optical intensity is found to be aligned along the (110) - (110) crystallographic axis; this is in agreement with theoretical predictions.

Dependence of the residual surface resistance of superconducting radio frequency cavities on the cooling dynamics around T c

DOE Office of Scientific and Technical Information (OSTI.GOV)

Romanenko, A.; Grassellino, A.; Melnychuk, O.

We report a strong effect of the cooling dynamics throughmore » $$T_\\mathrm{c}$$ on the amount of trapped external magnetic flux in superconducting niobium cavities. The effect is similar for fine grain and single crystal niobium and all surface treatments including electropolishing with and without 120$$^\\circ$$C baking and nitrogen doping. Direct magnetic field measurements on the cavity walls show that the effect stems from changes in the flux trapping efficiency: slow cooling leads to almost complete flux trapping and higher residual resistance while fast cooling leads to the much more efficient flux expulsion and lower residual resistance.« less

Precipitation of hydrides in high purity niobium after different treatments

DOE Office of Scientific and Technical Information (OSTI.GOV)

Barkov, F.; Romanenko, A.; Trenikhina, Y.

Precipitation of lossy non-superconducting niobium hydrides represents a known problem for high purity niobium in superconducting applications. Using cryogenic optical and laser confocal scanning microscopy we have directly observed surface precipitation and evolution of niobium hydrides in samples after different treatments used for superconducting RF cavities for particle acceleration. Precipitation is shown to occur throughout the sample volume, and the growth of hydrides is well described by the fast diffusion-controlled process in which almost all hydrogen is precipitated atmore » $T=140$~K within $$\\sim30$$~min. 120$$^{\\circ}$$C baking and mechanical deformation are found to affect hydride precipitation through their influence on the number of nucleation and trapping centers.« less

Carbon Doping of Compound Semiconductor Epitaxial Layers Grown by Metalorganic Chemical Vapor Deposition Using Carbon Tetrachloride.

NASA Astrophysics Data System (ADS)

Cunningham, Brian Thomas

1990-01-01

A dilute mixture of CCl_4 in high purity H_2 has been used as a carbon dopant source for rm Al_ {x}Ga_{1-x}As grown by low pressure metalorganic chemical vapor deposition (MOCVD). To understand the mechanism for carbon incorporation from CCl_4 doping and to provide experimental parameters for the growth of carbon doped device structures, the effects of various crystal growth parameters on CCl _4 doping have been studied, including growth temperature, growth rate, V/III ratio, Al composition, and CCl_4 flow rate. Although CCl _4 is an effective p-type dopant for MOCVD rm Al_{x}Ga_ {1-x}As, injection of CCl_4 into the reactor during growth of InP resulted in no change in the carrier concentration or carbon concentration. Abrupt, heavy carbon doping spikes in GaAs have been obtained using CCl_4 without a dopant memory effect. By annealing samples with carbon doping spikes grown within undoped, n-type, and p-type GaAs, the carbon diffusion coefficient in GaAs at 825 ^circC has been estimated and has been found to depend strongly on the GaAs background doping. Heavily carbon doped rm Al_{x}Ga _{1-x}As/GaAs superlattices have been found to be more stable against impurity induced layer disordering (IILD) than Mg or Zn doped superlattices, indicating that the low carbon diffusion coefficient limits the IILD process. Carbon doping has been used in the base region on an Npn AlGaAs/GaAs heterojunction bipolar transistor (HBT). Transistors with 3 x 10 μm self-aligned emitter fingers have been fabricated which exhibit a current gain cutoff frequency of f_ {rm t} = 26 GHz.

An association between central aortic pressure and subclinical organ damage of the heart among a general Japanese cohort: Circulatory Risk in Communities Study (CIRCS).

PubMed

Cui, Renzhe; Li, Yuanying; Krisztina, Gero; Yamagishi, Kazumasa; Umesawa, Mitsumasa; Imano, Hironori; Ohira, Tetsuya; Kiyama, Masahiko; Okada, Takeo; Kitamura, Akihiko; Hitsumoto, Shinichi; Tanigawa, Takeshi; Iso, Hiroyasu

2014-01-01

This study aimed to investigate associations between central aortic pressure (CAP) and subclinical organ damage of the heart amongst the general population. We conducted a cross-sectional study in a community-based population, consisting of 3002 men and women aged between 40 and 79 years. The CAP was measured using the HEM-9000AI device, an automated tonometer. Electrocardiograms (ECG) were read according to the Minnesota Code. Subclinical organ damage in the heart was defined as measurable left high amplitude R waves (LHAR), major and minor ST-T abnormalities, and left ventricular hypertrophy (LVH). Age- and sex-adjusted prevalence of LHAR, major and minor ST-T abnormalities, and LVH was higher for subjects in the highest tertile of CAP levels than those in the lowest tertile. After further adjustments for other cardiovascular risk factors, these associations did not change substantially. The multivariable odds ratios (ORs) (95% CI) of LHAR, major and minor ST-T abnormalities, and LVH for the highest tertile of CAP levels compared to the lowest tertile were 2.7(1.9-3.9), 1.8(1.1-2.9), 1.7(1.3-2.3) and 3.2(1.3-8.1), respectively. The positive associations with LHAR and minor ST-T abnormalities were observed primarily among non-hypertensive subjects. The respective corresponding ORs were 2.8(1.7-4.6) and 1.7(1.2-2.4) for non-hypertensive subjects, and 1.7(0.9-3.3) and 1.1(0.7-1.8) for hypertensive subjects. CAP levels were associated with subclinical organ damage of the heart independent of cardiovascular risk factors, and these associations were primarily seen in non-hypertensive subjects. Copyright © 2013 Elsevier Ireland Ltd. All rights reserved.