Characterization of clay scales forming in Philippine geothermal wells

DOE Office of Scientific and Technical Information (OSTI.GOV)

Reyes, A.G.; Cardile, C.M.

1989-01-01

Smectite scales occur in 24 out of the 36 blocked wells located in Tongonan, Palinpinon and Bacon-Manito. These comprise 2-85% of the well scales and form at depths of 33-2620 m, where measured and fluid inclusion temperatures are 40-320{sup 0}C. Most, however, occur below the production casing show where temperatures are {ge}230{sup 0}C, often at depths coinciding with aquifers. The clay scales are compositionally and structurally different from the bentonite used in drilling, which is essentially sodium-rich montmorillonite. The clay deposits are expanding, generally disordered, and combine the characteristics of a montmorillonite, saponite and vermiculite in terms of reaction tomore » cationic exchange treatments, structure and composition. Six types of clay scales are identified, but the predominant one, comprising 60-100% of the clay deposits in a well, is Mg- and Fe-rich and referred to as a vermiculitic species. The crystallinity, degree of disorder, textures, optical characteristics, structure and relative amounts of structural Al, Mg and Fe vary with time, temperature and fluid composition, but not with depth and measured pressure. Despite its variance from bentonite characteristics, one of the dominant suggested mechanisms of clay scale formation uses the drilling mud in the well as a substrate, from which the Mg- and Fe-rich clay evolves.« less

The Multi-Stage History of Mt. Sharp

NASA Technical Reports Server (NTRS)

Allen, C.; Dapremont, A.

2013-01-01

The Curiosity rover is exploring Gale crater and Mt. Sharp, Gale's 5-km high central mound. We are investigating the history of alteration and erosion of Mt. Sharp using orbital imagery, spectroscopy and rover observations. Our results suggest a significant time gap between emplacement of the upper and lower sections of the mound. Crater counts show that the lower mound was formed soon after Gale itself, and that it contains distinct units ranging in altitude from approximately -4,500 to -1,800 m. Spectral data suggest that many units contain phyllosilicates. We found that these clay-bearing rocks occur in distinct layers concentrated below -2,900 m. Parts of the lower mound exhibit a transition from clays to sulfates with increasing altitude. The lower mound shows evidence of flowing water, including canyons and inverted channels. Wind erosion produced km-scale yardangs and scalloped cliffs. Our mapping shows that many yardangs in the lower mound are clay-bearing, with a predominant orientation of around N-S. Curiosity's ground-level images show myriad fine-scale, mainly horizontal layers in the lower mound. The rover has found stream beds and conglomerates, indicating that water once flowed on the crater floor. Drilling near the deepest point in Gale produced abundant clay, providing additional evidence of aqueous alteration. Upper mound units range in altitude from -2,100 m to +500 m, and mantle the lower mound above an angular unconformity. Most upper mound units are composed of layers. The formation age of the upper mound is unknown, since few craters are preserved. Clay-bearing layers are detectable in several locations, mainly at altitudes near -2,000 m. There is no evidence of water flow, but wind erosion has scalloped the surfaces and edges of layers, and fine-scale yardangs are common. Correlations between yardangs and clay spectra are apparent only in the lowermost units of the upper mound. Yardang orientations vary, and include N-S, NW-SE, and NE-SW. Upper mound units resemble the planet-wide Medusae Fossae formation, dated as Hesperian and argued to be composed of ignimbrites. Medusae Fossae layers are easily eroded by wind, and our mapping demonstrates their resemblance to upper mound fine-scale yardangs. The history of Mt. Sharp started with deposition and lithification of sediments shortly after crater formation. Some lower mound layers were partially altered to clays and sulfates, and water formed streams and canyons. Wind erosion of the lower mound produced large-scale yardangs, particularly in clay-rich layers, oriented generally N-S. Upper mound units were emplaced following a considerable period of wind erosion. The absence of water flow on the upper mound suggests that these units were emplaced after atmospheric loss rendered water unstable at the surface. The shift in dominant wind direction, as indicated by yardang orientations, also argues for a time gap between erosion of the lower and upper mound. These observations are consistent with upper mound units being related to the Hesperian Medusae Fossae formation. During 2014 Curiosity is expected to reach the foot of Mt. Sharp and ascend through the clay-rich layers, into the sulfate-rich layers, and possibly past the interface with the upper mound. This will be a unique opportunity to field check geologic models on the surface of Mars.

Research and application of multi-hydrogen acidizing technology of low-permeability reservoirs for increasing water injection

NASA Astrophysics Data System (ADS)

Ning, Mengmeng; Che, Hang; Kong, Weizhong; Wang, Peng; Liu, Bingxiao; Xu, Zhengdong; Wang, Xiaochao; Long, Changjun; Zhang, Bin; Wu, Youmei

2017-12-01

The physical characteristics of Xiliu 10 Block reservoir is poor, it has strong reservoir inhomogeneity between layers and high kaolinite content of the reservoir, the scaling trend of fluid is serious, causing high block injection well pressure and difficulty in achieving injection requirements. In the past acidizing process, the reaction speed with mineral is fast, the effective distance is shorter and It is also easier to lead to secondary sedimentation in conventional mud acid system. On this point, we raised multi-hydrogen acid technology, multi-hydrogen acid release hydrogen ions by multistage ionization which could react with pore blockage, fillings and skeletal effects with less secondary pollution. Multi-hydrogen acid system has advantages as moderate speed, deep penetration, clay low corrosion rate, wet water and restrains precipitation, etc. It can reach the goal of plug removal in deep stratum. The field application result shows that multi-hydrogen acid plug removal method has good effects on application in low permeability reservoir in Block Xiliu 10.

Clay-enhanced DNA separation in low-molecular-weight poly(N,N-dimethylacrylamide) solution by capillary electrophoresis.

PubMed

Liang, D; Song, L; Chen, Z; Chu, B

2001-06-01

The effect of the separation medium in capillary electrophoresis consisting of a low-molecular-mass poly(N,N-dimethylacrylamide) (PDMA) solution on the DNA separation by adding a small amount of montmorillonite clay into the polymer matrix is presented. On the separation of the pBR322/HaeIII digest, both the resolution and the efficiency were increased by adding 2.5-5.0 x 10(-5) g/mL clay into the 5% w/v PDMA with a molecular mass of only 100 K. Moreover, there was no increase in the migration time of DNA fragments. Similar results were observed by using a C-terminated pGEM-3Zf(+) sequencing DNA sample in a sequencing buffer. Experimental data also showed that the addition of clay increased the viscosity of the polymer solution. We attribute this effect to the structural change of the polymer matrix caused by the exfoliated clay sheets, whereby the thin clay sheets function like a "dynamic cross-linking plate" for the PDMA chains and effectively increase the apparent molecular mass of PDMA.

Identification of dominating factors affecting vadose zone vulnerability by a simulation method

PubMed Central

Li, Juan; Xi, Beidou; Cai, Wutian; Yang, Yang; Jia, Yongfeng; Li, Xiang; Lv, Yonggao; Lv, Ningqing; Huan, Huan; Yang, Jinjin

2017-01-01

The characteristics of vadose zone vulnerability dominating factors (VDFs) are closely related to the migration and transformation mechanisms of contaminants in the vadose zone, which directly affect the state of the contaminants percolating to the groundwater. This study analyzes the hydrogeological profile of the pore water regions in the vadose zone, and conceptualizes the vadose zone as single lithologic, double lithologic, or multi lithologic. To accurately determine how the location of the pollution source influences the groundwater, we classify the permeabilities (thicknesses) of different media into clay-layer and non-clay-layer permeabilities (thicknesses), and introduce the maximum pollution thickness. Meanwhile, the physicochemical reactions of the contaminants in the vadose zone are represented by the soil adsorption and soil degradability. The VDFs are determined from the factors and parameters in groundwater vulnerability assessment. The VDFs are identified and sequenced in simulations and a sensitivity analysis. When applied to three polluted sites in China, the method improved the weighting of factors in groundwater vulnerability assessment, and increased the reliability of predicting groundwater vulnerability to contaminants. PMID:28387232

Deformation mechanisms and resealing of damage zones in experimentally deformed cemented and un-cemented clay-rich geomaterials, at low bulk strain

NASA Astrophysics Data System (ADS)

Desbois, Guillaume; Urai, Janos L.; Schuck, Bernhardt; Hoehne, Nadine; Oelker, Anne; Bésuelle, Pierre; Viggiani, Gioacchino; Schmatz, Joyce; Klaver, Jop

2017-04-01

A microphysics-based understanding of mechanical and fluid flow properties in clay-rich geomaterials is required for extrapolating better constitutive equations beyond the laboratory's time scales, so that predictions over the long term can be made less uncertain. In this contribution, we present microstructural investigations of rocks specimens sheared in triaxial compression at low bulk strain, by using the combination of broad-ion-beam (BIB) milling and scanning electron microscopy (SEM) to infer deformation mechanisms based on microstructures imaged at sub-micron resolution. Two end-member clay-rich geomaterials from European Underground Laboratories (URL) were analysed: (i) the poorly cemented Boom Clay sediment (BC from URL at Mol/Dessel, Belgium; confining pressure [CP] = 0.375 & 1.5 MPa) and (ii) the Callovo-Oxfordian claystone (COx from the URL at Bure, France; CP = 2 & 10 MPa). Although as a first approximation the inelastic bahvior of cemented and uncemented clay-rich geomaterials can be described by similar pressure-dependent hardening plasticity models, deformed samples in this contribution show very contrasting micro-scale behaviour: microstructures reveal brittle-ductile transitional behaviour in BC, whereas deformation in COx is dominantly cataclastic. In Boom Clay, at meso-scale, shear bands exhibit characteristics that are typical of uncemented small-grained clay-rich materials deformed at high shear strains, consisting of anastomosing shears interpreted as Y- and B-shears, which bound the passively deformed microlithons. At micro- down to nano-scale, the strong shape preferential orientation of clay aggregates in the anastomosing shears is interpreted to be responsible of the shear weakness. More over, the reworking of clay aggregates during deformation contributes to the collapsing of porosity in the shear band. Ductile deformation mechanisms represented by grain-rotation, grain-sliding, bending and granular flow mechanisms are strongly involved for the development of the shear band. At the same time, evidence for dilatancy at low confining pressure indicates that deformation involves also brittle deformation. Our observations strongly suggest that the deformation mostly localizes in those regions of the specimen, where the original grain sizes are smaller. In COx, microstructures show evidence for dominantly cataclastic deformation involving intergranular - transgranular - and - intragranular micro fracturing, grain rotation and clay particle bending mechanisms, down to nm- scale. Micro fracturing of the original fabric results in fragments at a range of scales, which are reworked into a clay-rich cataclastic gouge during frictional flow. Intergranular and minor intragranular micro fracturing occur in regions of non localized deformation, whereas transgranular micro fracturing occurs at regions of localized deformation. These processes are accompanied by dilatancy, but also by progressive decrease of porosity and pore size in the gouge with the non-clay particles embedded in reworked clay. The mechanism of this compaction during shearing is interpreted to be a combination of cataclasis of the cemented clay matrix, and shear-induced rearrangement of clay particles around the fragments of non-clay particles.

Dehydration-induced luminescence in clay minerals

NASA Technical Reports Server (NTRS)

Coyne, L. M.; Lahav, N.; Lawless, J. G.

1981-01-01

Reports of triboluminescent phenomena in organic crystalline materials prompted a search for related processes in clay minerals. The reported extensive mechanical distortion produced on freezing and drying of montmorillonite was particularly interesting because of studies of condensation reactions in a wet/dry cycled reaction sequence. The discovery of an unusual luminescent process in several clay minerals is reported and its characteristics are described.

Multi-metals column adsorption of lead(II), cadmium(II) and manganese(II) onto natural bentonite clay.

PubMed

Alexander, Jock Asanja; Surajudeen, Abdulsalam; Aliyu, El-Nafaty Usman; Omeiza, Aroke Umar; Zaini, Muhammad Abbas Ahmad

2017-10-01

The present work was aimed at evaluating the multi-metals column adsorption of lead(II), cadmium(II) and manganese(II) ions onto natural bentonite. The bentonite clay adsorbent was characterized for physical and chemical properties using X-ray diffraction, X-ray fluorescence, Brunauer-Emmett-Teller surface area and cation exchange capacity. The column performance was evaluated using adsorbent bed height of 5.0 cm, with varying influent concentrations (10 mg/L and 50 mg/L) and flow rates (1.4 mL/min and 2.4 mL/min). The result shows that the breakthrough time for all metal ions ranged from 50 to 480 minutes. The maximum adsorption capacity was obtained at initial concentration of 10 mg/L and flow rate of 1.4 mL/min, with 2.22 mg/g of lead(II), 1.71 mg/g of cadmium(II) and 0.37 mg/g of manganese(II). The order of metal ions removal by natural bentonite is lead(II) > cadmium(II) > manganese(II). The sorption performance and the dynamic behaviour of the column were predicted using Adams-Bohart, Thomas, and Yoon-Nelson models. The linear regression analysis demonstrated that the Thomas and Yoon-Nelson models fitted well with the column adsorption data for all metal ions. The natural bentonite was effective for the treatment of wastewater laden with multi-metals, and the process parameters obtained from this work can be used at the industrial scale.

Tracking Virus Particles in Fluorescence Microscopy Images Using Multi-Scale Detection and Multi-Frame Association.

PubMed

Jaiswal, Astha; Godinez, William J; Eils, Roland; Lehmann, Maik Jorg; Rohr, Karl

2015-11-01

Automatic fluorescent particle tracking is an essential task to study the dynamics of a large number of biological structures at a sub-cellular level. We have developed a probabilistic particle tracking approach based on multi-scale detection and two-step multi-frame association. The multi-scale detection scheme allows coping with particles in close proximity. For finding associations, we have developed a two-step multi-frame algorithm, which is based on a temporally semiglobal formulation as well as spatially local and global optimization. In the first step, reliable associations are determined for each particle individually in local neighborhoods. In the second step, the global spatial information over multiple frames is exploited jointly to determine optimal associations. The multi-scale detection scheme and the multi-frame association finding algorithm have been combined with a probabilistic tracking approach based on the Kalman filter. We have successfully applied our probabilistic tracking approach to synthetic as well as real microscopy image sequences of virus particles and quantified the performance. We found that the proposed approach outperforms previous approaches.

MODIFIED REVERSE OSMOSIS SYSTEM FOR TREATMENT OF PRODUCED WATERS

DOE Office of Scientific and Technical Information (OSTI.GOV)

T.M. Whitworth; Liangxiong Li

2002-09-15

This report describes work performed during the second year of the project ''Modified reverse osmosis system for treatment of produced waters.'' We performed two series of reverse osmosis experiments using very thin bentonite clay membranes compacted to differing degrees. The first series of 10 experiments used NaCl solutions with membranes that ranged between 0.041 and 0.064mm in thickness. Our results showed compaction of such ultra-thin clay membranes to be problematic. The thickness of the membranes was exceeded by the dimensional variation in the machined experimental cell and this is believed to have resulted in local bypassing of the membrane withmore » a resultant decrease in solute rejection efficiency. In two of the experiments, permeate flow was varied as a percentage of the total flow to investigate results of changing permeate flow on solute rejection. In one experiment, the permeate flow was varied between 2.4 and 10.3% of the total flow with no change in solute rejection. In another experiment, the permeate flow was varied between 24.6 and 52.5% of the total flow. In this experiment, the solute rejection rate decreased as the permeate occupied greater fractions of the total flow. This suggests a maximum solute rejection efficiency for these clay membranes for a permeate flow of between 10.3 and 24.6% of the total; flow. Solute rejection was found to decrease with increasing salt concentration and ranged between 62.9% and 19.7% for chloride and between 61.5 and 16.8% for sodium. Due to problems with the compaction procedure and potential membrane bypassing, these rejection rates are probably not the upper limit for NaCl rejection by bentonite membranes. The second series of four reverse osmosis experiments was conducted with a 0.057mm-thick bentonite membrane and dilutions of a produced water sample with an original TDS of 196,250 mg/l obtained from a facility near Loco Hill, New Mexico, operated by an independent. These experiments tested the separation efficiency of the bentonite membrane for each of the dilutions. We found that membrane efficiency decreased with increasing solute concentration and with increasing TDS. The rejection of SO{sub 4}{sup 2-} was greater than Cl{sup -}. This may be because the SO{sub 4}{sup 2-} concentration was much lower than the Cl{sup -} concentration in the waters tested. The cation rejection sequence varied with solute concentration and TDS. The solute rejection sequence for multi-component solutions is difficult to predict for synthetic membranes; it may not be simple for clay membranes either. The permeate flows in our experiments were 4.1 to 5.4% of the total flow. This suggests that very thin clay membranes may be useful for some separations. Work on development of a spiral-wound clay membrane module found that it is difficult to maintain compaction of the membrane if the membrane is rolled and then inserted in the outer tube. A different design was tried using a cylindrical clay membrane and this also proved difficult to assemble with adequate membrane compaction. The next step is to form the membrane in place using hydraulic pressure on a thin slurry of clay in either water or a nonpolar organic solvent such as ethanol. Technology transfer efforts included four manuscripts submitted to peer-reviewed journals, two abstracts, and chairing a session on clays as membranes at the Clay Minerals Society annual meeting.« less

Determining the multi-scale hedge ratios of stock index futures using the lower partial moments method

NASA Astrophysics Data System (ADS)

Dai, Jun; Zhou, Haigang; Zhao, Shaoquan

2017-01-01

This paper considers a multi-scale future hedge strategy that minimizes lower partial moments (LPM). To do this, wavelet analysis is adopted to decompose time series data into different components. Next, different parametric estimation methods with known distributions are applied to calculate the LPM of hedged portfolios, which is the key to determining multi-scale hedge ratios over different time scales. Then these parametric methods are compared with the prevailing nonparametric kernel metric method. Empirical results indicate that in the China Securities Index 300 (CSI 300) index futures and spot markets, hedge ratios and hedge efficiency estimated by the nonparametric kernel metric method are inferior to those estimated by parametric hedging model based on the features of sequence distributions. In addition, if minimum-LPM is selected as a hedge target, the hedging periods, degree of risk aversion, and target returns can affect the multi-scale hedge ratios and hedge efficiency, respectively.

Action recognition using multi-scale histograms of oriented gradients based depth motion trail Images

NASA Astrophysics Data System (ADS)

Wang, Guanxi; Tie, Yun; Qi, Lin

2017-07-01

In this paper, we propose a novel approach based on Depth Maps and compute Multi-Scale Histograms of Oriented Gradient (MSHOG) from sequences of depth maps to recognize actions. Each depth frame in a depth video sequence is projected onto three orthogonal Cartesian planes. Under each projection view, the absolute difference between two consecutive projected maps is accumulated through a depth video sequence to form a Depth Map, which is called Depth Motion Trail Images (DMTI). The MSHOG is then computed from the Depth Maps for the representation of an action. In addition, we apply L2-Regularized Collaborative Representation (L2-CRC) to classify actions. We evaluate the proposed approach on MSR Action3D dataset and MSRGesture3D dataset. Promising experimental result demonstrates the effectiveness of our proposed method.

Understanding the Groundwater Hydrology of a Geographically-Isolated Prairie Fen: Implications for Conservation.

PubMed

Sampath, Prasanna Venkatesh; Liao, Hua-Sheng; Curtis, Zachary Kristopher; Doran, Patrick J; Herbert, Matthew E; May, Christopher A; Li, Shu-Guang

2015-01-01

The sources of water and corresponding delivery mechanisms to groundwater-fed fens are not well understood due to the multi-scale geo-morphologic variability of the glacial landscape in which they occur. This lack of understanding limits the ability to effectively conserve these systems and the ecosystem services they provide, including biodiversity and water provisioning. While fens tend to occur in clusters around regional groundwater mounds, Ives Road Fen in southern Michigan is an example of a geographically-isolated fen. In this paper, we apply a multi-scale groundwater modeling approach to understand the groundwater sources for Ives Road fen. We apply Transition Probability geo-statistics on more than 3000 well logs from a state-wide water well database to characterize the complex geology using conditional simulations. We subsequently implement a 3-dimensional reverse particle tracking to delineate groundwater contribution areas to the fen. The fen receives water from multiple sources: local recharge, regional recharge from an extensive till plain, a regional groundwater mound, and a nearby pond. The regional sources deliver water through a tortuous, 3-dimensional "pipeline" consisting of a confined aquifer lying beneath an extensive clay layer. Water in this pipeline reaches the fen by upwelling through openings in the clay layer. The pipeline connects the geographically-isolated fen to the same regional mound that provides water to other fen clusters in southern Michigan. The major implication of these findings is that fen conservation efforts must be expanded from focusing on individual fens and their immediate surroundings, to studying the much larger and inter-connected hydrologic network that sustains multiple fens.

The Decline of Mortality of Cottonwood Clone Stoneville 124 on a Clay Soil

Treesearch

John K. Francis; Francis I. McCracken

1985-01-01

A decline sequence involving multiple factors was proposed as the cause of death and diminished crowns of 12-year-old cottonwood planted on a clay site. Stoneville clone 124, of which the plantation was formed, has proved to be poorly adapted to clay soils. Rates of death and weakened crowns were shown to be related to minor elevation differences within the plantation...

Clay mineral formation and transformation in rocks and soils

USGS Publications Warehouse

Eberl, D.D.

1983-01-01

Three mechanisms for clay mineral formation (inheritance, neoformation, and transformation) operating in three geological environments (weathering, sedimentary, and diagenetic-hydrothermal) yield nine possibilities for the origin of clay minerals in nature. Several of these possibilities are discussed in terms of the rock cycle. The mineralogy of clays neoformed in the weathering environment is a function of solution chemistry, with the most dilute solutions favoring formation of the least soluble clays. After erosion and transportation, these clays may be deposited on the ocean floor in a lateral sequence that depends on floccule size. Clays undergo little reaction in the ocean, except for ion exchange and the neoformation of smectite; therefore, most clays found on the ocean floor are inherited from adjacent continents. Upon burial and heating, however, dioctahedral smectite reacts in the diagenetic environment to yield mixed-layer illite-smectite, and finally illite. With uplift and weathering, the cycle begins again. Refs.

Clay and Shale Permeability at Lab to Regional Scale

NASA Astrophysics Data System (ADS)

Neuzil, C.

2017-12-01

Because clays, shales, and other clay-rich media tend to be only poorly permeable, and are laterally extensive and voluminous, they play key roles in problems as diverse as groundwater supply, waste confinement, exploitation of conventional and unconventional oil and gas, and deformation and failure in the crust. Clay and shale permeability is a crucial but often highly uncertain analysis parameter; direct measurements are challenging, error-prone, and - perhaps most importantly - provide information only at quite small scales. Fortunately, there has been a dramatic increase in clay and shale permeability data from sources that include scientific ocean drilling, nuclear waste repository research, groundwater resource studies, liquid waste and CO2 sequestration, and oil and gas research. The effect of lithology as well as porosity on matrix permeability can now be examined and permeability - scale relations are becoming discernable. A significant number of large-scale permeability estimates have been obtained by inverse methods that essentially treat large-scale flow systems as natural experiments. They suggest surprisingly little scale-dependence in clay and shale permeabilities in subsiding basins and accretionary complexes. Stable continental settings present a different picture; as depths increase beyond 1 km, scale dependence mostly disappears even over the largest areas. At depths less than 1 km, secondary permeability is not always present over areas of 1 - 10 km2, but always evident for areas in excess of about 103 km2. Transmissive fractures have been observed in very low porosity (< 0.03) shales in these settings, but the cause of scale dependence in other cases is unclear; it may reflect time-dependent, or "dynamic" conditions, including irreversible and ongoing changes imposed on subsurface flow systems by human activities.

Colorstratigraphy; A New Stratigraphic Correlation Technique

NASA Astrophysics Data System (ADS)

Nanayakkara, N. U.; Ranasinghage, P. N.; Priyantha, C.; Abillapitiya, T.

2016-12-01

Here we introduce a novel stratigraphic technique namely colorstratigraphy for correlating sedimentary sequences. Minihagalkanda is about 1 km long amphitheater like sedimentary terrain, situated at the southeastern coast of Sri Lanka. It has Miocene sedimentary sequences, separated in to 10-12 m high small hillocks by erosion, and bounded by about 30 m high escarpment. Sandstone, yellowish sandy clay, greenish silty clay sequences are capped by 4-5 m limestone bed in these hillocks but not at the boundary escarpment. Stratigraphic profiles at two hillocks and the boundary escarpment, separated each other by 200-300 m, were selected to test the new colorstartigraphic correlation technique. Color reflectance (DSR) was measured at four samples in each sequence at every profile and hence altogether 36 reflectance measurements were taken using Minolta 2500D hand-held color spectrophotometer. The first-derivative of the reflectance spectra (dR/dλ) defines the "spectral shape" of the sample. Therefore, DSR data (360-740 nm) measured at 10 nm resolution were used to calculate a center-weighted, first-derivative spectra for each reflectance sample consisting of 39 channels. Particle size of each sequence was measured at all 03 profiles using laser particle size analyzer to verify the stratigraphic correlation. Mean reflectance spectrum for each sequence at all 03 profiles were plotted on the same graph for comparison. Same was done for the grain size spectrums. Discriminant function analysis was performed separately for dsr data and grain size data using a number assigned to each sedimentary sequence as the grouping variable Color spectrums of sandstone, yellowish sandy clay, and greenish silty clay sequences at all three profiles perfectly match showing clear stratigraphic correlation among these three stratigraphic profiles. Matching grain size distribution curves of the three sequence at the three profiles verify the stratigraphic correlation. Perfect 100 % discrimination of the three sequences with color reflectance data proves the accuracy of the correlation. Similar 100 % discrimination resulted with grain size data further verifies the results. Therefore, colorstratigraphy based on DSR can be introduced as a quick and easy technique for stratigraphic correlation of sedimentary sequences.

Effective Visual Tracking Using Multi-Block and Scale Space Based on Kernelized Correlation Filters

PubMed Central

Jeong, Soowoong; Kim, Guisik; Lee, Sangkeun

2017-01-01

Accurate scale estimation and occlusion handling is a challenging problem in visual tracking. Recently, correlation filter-based trackers have shown impressive results in terms of accuracy, robustness, and speed. However, the model is not robust to scale variation and occlusion. In this paper, we address the problems associated with scale variation and occlusion by employing a scale space filter and multi-block scheme based on a kernelized correlation filter (KCF) tracker. Furthermore, we develop a more robust algorithm using an appearance update model that approximates the change of state of occlusion and deformation. In particular, an adaptive update scheme is presented to make each process robust. The experimental results demonstrate that the proposed method outperformed 29 state-of-the-art trackers on 100 challenging sequences. Specifically, the results obtained with the proposed scheme were improved by 8% and 18% compared to those of the KCF tracker for 49 occlusion and 64 scale variation sequences, respectively. Therefore, the proposed tracker can be a robust and useful tool for object tracking when occlusion and scale variation are involved. PMID:28241475

Effective Visual Tracking Using Multi-Block and Scale Space Based on Kernelized Correlation Filters.

PubMed

Jeong, Soowoong; Kim, Guisik; Lee, Sangkeun

2017-02-23

Accurate scale estimation and occlusion handling is a challenging problem in visual tracking. Recently, correlation filter-based trackers have shown impressive results in terms of accuracy, robustness, and speed. However, the model is not robust to scale variation and occlusion. In this paper, we address the problems associated with scale variation and occlusion by employing a scale space filter and multi-block scheme based on a kernelized correlation filter (KCF) tracker. Furthermore, we develop a more robust algorithm using an appearance update model that approximates the change of state of occlusion and deformation. In particular, an adaptive update scheme is presented to make each process robust. The experimental results demonstrate that the proposed method outperformed 29 state-of-the-art trackers on 100 challenging sequences. Specifically, the results obtained with the proposed scheme were improved by 8% and 18% compared to those of the KCF tracker for 49 occlusion and 64 scale variation sequences, respectively. Therefore, the proposed tracker can be a robust and useful tool for object tracking when occlusion and scale variation are involved.

Strategy for Extracting DNA from Clay Soil and Detecting a Specific Target Sequence via Selective Enrichment and Real-Time (Quantitative) PCR Amplification ▿

PubMed Central

Yankson, Kweku K.; Steck, Todd R.

2009-01-01

We present a simple strategy for isolating and accurately enumerating target DNA from high-clay-content soils: desorption with buffers, an optional magnetic capture hybridization step, and quantitation via real-time PCR. With the developed technique, μg quantities of DNA were extracted from mg samples of pure kaolinite and a field clay soil. PMID:19633108

A record of reversed polarity carries by the iron sulphide greigite in British early Pleistocene sediments

NASA Astrophysics Data System (ADS)

Hallam, D. F.; Maher, B. A.

1994-01-01

Palaeomagnetic measurements were made on samples extracted from a short sequence of early Pleistocene estuarine clays, now exposed in a sea cliff near Sheringham on the north Norfolk coast, UK. On the basis of earlier palynological work, these clays had been ascribed a Pastonian (late Tiglian) age. The clays show marked changes in colour, from reddish-brown at the top of the unit, to blue-grey in the middle, and grey-brown at the base. The palaeomagnetic data vary in close association with these colour changes. The top and basal brown clays show scattered normal directions of low intensity, while the middle blue clays show strongly clustered reversed directions, of much higher intensities. Some samples taken from the boundary between the middle blue clays and upper red clays show upon demagnetisation a normal overprint on a stable reversed polarity. Using high-gradient magnetic extraction, magnetic concentrates have been obtained from the strongly magnetic middle blue clays. The presence of iron sulphide minerals in these concentrates was identified using energy-dispersive X-ray analysis during scanning electron microscopy. More specifically, X-ray diffraction identifies greigite as the only detectable ferrimagnetic mineral in the magnetic concentrates. Rock magnetic measurements show clear qualitative differences in the magnetic mineralogies of the three clay subunits, but absolute identification of the magnetic mineralogy of the weakly magnetic upper and basal brown clays has not yet been possible. We interpret the sequence as a primary reversed polarity record. This record is carried by the iron sulphide greigate as a chemical remanence acquired during `syn'-depositional reduction of iron via the decomposition of organic material in these anoxic tidal clays. Subsequently, the upper and basl subunits of the clay have been oxidised by permeation of groundwater from the adjacent coarse-grained sediments. Most of the griegite in the oxidised margins of the clay has been altered as a result, to a new, less efficient magnetic recording material which thus carries a later, scattered, low-intensity, normal overprint.

Application of Chromophoric Dissolved Organic Matter Absorbance and Excitation-Emission Matrix Fluorescence Spectra (EEMS) to Investigate Clay-Organic Matter Flocculation Processes in Riverine-Estuarine Systems

NASA Astrophysics Data System (ADS)

Smith, J. P.; Reed, A. H.; Boyd, T. J.

2016-12-01

Changes in hydrodynamic shear, variations in ionic strength (salinity), and to a lesser degree pH, along the salinity gradient influences clay-organic matter (OM) flocculation, disaggregation and particle size distributions with depth in natural river-estuarine waters. The scale and rate of aggregation and disaggregation of specific clay-OM flocs assemblages under different hydrodynamic and physiochemical conditions in estuaries or coastal river systems is an area of ongoing research. Chromophoric dissolved organic matter (CDOM) is the fraction of the DOM pool that absorbs and/or emits light at discrete wavelengths when excited. The CDOM absorbance and Excitation Emission Matrix (EEM) fluorescence spectra in natural waters can potentially be used to investigate clay-OM interactions and implications for formation kinetics, size, strength, and settling velocities of cohesive particulate aggregates (flocs and suspended sediments) as they respond to hydrodynamic shear under different physiochemical conditions. Size characteristics of particulate matter and sediment samples collected from the Misa River in Italy in 2014 were compared to the optical properties of the water column to identify potential OM components/constituents influencing flocculation processes in riverine-estuarine systems. The EEMs results were coupled with a parallel factor analysis (PARAFAC) model to associate previously identified EEMS regions of CDOM components to those found in the waters of this study and identify the main OM components/constituents influencing the multi-way variance of the EEMS data. Initial results from the Misa River and subsequent studies show a difference in dominant DOM types by salinity, clay-OM composition, and flow conditions that may be indicative of system specific particle flocculation and disaggregation under different hydrodynamic regimes. These results suggest that the CDOM absorbance and EEMS fluorescence spectra in natural waters can potentially be used to qualify the influence of OM on the flocculation and sedimentation of clay particulates in river-estuarine systems under different physiochemical and hydrodynamic conditions.

A three-scale model for ionic solute transport in swelling clays incorporating ion-ion correlation effects

NASA Astrophysics Data System (ADS)

Le, Tien Dung; Moyne, Christian; Murad, Marcio A.

2015-01-01

A new three-scale model is proposed to describe the movement of ionic species of different valences in swelling clays characterized by three separate length scales (nano, micro, and macro) and two levels of porosity (nano- and micropores). At the finest (nano) scale the medium is treated as charged clay particles saturated by aqueous electrolyte solution containing monovalent and divalent ions forming the electrical double layer. A new constitutive law is constructed for the disjoining pressure based on the numerical resolution of non-local problem at the nanoscale which, in contrast to the Poisson-Boltzmann theory for point charge ions, is capable of capturing the short-range interactions between the ions due to their finite size. At the intermediate scale (microscale), the two-phase homogenized particle/electrolyte solution system is represented by swollen clay clusters (or aggregates) with the nanoscale disjoining pressure incorporated in a modified form of Terzaghi's effective principle. At the macroscale, the electro-chemical-mechanical couplings within clay clusters is homogenized with the ion transport in the bulk fluid lying in the micro pores. The resultant macroscopic picture is governed by a three-scale model wherein ion transport takes place in the bulk solution strongly coupled with the mechanics of the clay clusters which play the role of sources/sinks of mass to the bulk fluid associated with ion adsorption/desorption in the electrical double layer at the nanoscale. Within the context of the quasi-steady version of the multiscale model, wherein the electrolyte solution in the nanopores is assumed at instantaneous thermodynamic equilibrium with the bulk fluid in the micropores, we build-up numerically the ion-adsorption isotherms along with the constitutive law of the retardation coefficients of monovalent and divalent ions. In addition, the constitutive law for the macroscopic swelling pressure is reconstructed numerically showing patterns of attractive forces between particles for bivalent ions for particular ranges of bulk concentrations. The three-scale model is applied to numerically simulate ion diffusion in a compacted clay liner underneath a sanitary landfill. Owing to the distinct constitutive behavior of the swelling pressure and partition coefficient for each ionic species, different compaction regimes and diffusion/adsorption patterns, with totally different characteristic time scales, are observed for sodium and calcium migration in the clay liner.

Sedimentology of cores recovered from the Canada Basin of the Arctic Ocean

NASA Astrophysics Data System (ADS)

Edwards, B. D.; Saint-Ange, F.; Pohlman, J.; Higgins, J.; Mosher, D. C.; Lorenson, T. D.; Hart, P.

2011-12-01

Researchers from the United States and Canada are collaborating to understand the tectonic and sedimentary history of the Arctic Ocean between Canada and Alaska. As part of this on-going study, a joint US-Canadian ice breaker expedition operated in parts of the Canada Basin during August 2010. Occasional interruptions of the seismic data acquisition provided the ship time to collect gravity and piston cores at five sites-of-opportunity throughout the basin. High-resolution multibeam bathymetry and chirp sub-bottom profiler data collected immediately prior to coring reveal the fine-scale morphology of each site. Core photographs, X-ray radiographs, and physical property data support the following descriptions. Two piston cores were collected from the Beaufort Sea continental margin in a region of known bottom simulating reflectors (BSRs). Site 1 (2538 m water depth): This core recovered 5.72 m of gas-charged, gray sticky clay and silty-clay from an approximately 1100 m diameter, 130 m high conical mound overlying the crest of a buried anticline. Gas hydrate recovered in the core catcher combined with cracks and voids, methane and other hydrocarbon gasses, pyrite concretions, chemosynthetic clams, carbonate nodules, and soft carbonate masses indicate the likely upward migration of deep-seated fluids. Site 2 (1157 m water depth): This core, positioned 40 km upslope from the gas hydrate core, recovered 3 m of gray sticky silty clay and clayey silt near the base of an erosional scarp. Some voids and fracturing are apparent but carbonate masses and pyrite concretions are absent. Site 3 (3070 m water depth): This core from the top of a seamount discovered in 2009 in the north-central part of the Canada Basin recovered 4.94 m of sediment. More than 3 m of dark brown to yellowish brown, massive interbedded silty clays with sands and matrix-supported gravels (ice rafted debris [IRD]) occur in abrupt contact with underlying reddish yellow to brownish yellow silty clay and gravelly sandy clay interpreted to be altered hydrothermally. Successions of IRD layers create a thinly- to medium-bedded sequence throughout the lower section. Site 4 (3700 m water depth; central Canada Basin): This core recovered 3.4 m of sediment typified by decimeter-thick sequences of stacked graded beds with erosional basal contacts (Bouma sequences) characteristic of turbidite deposition. Site 5 (2081 m water depth; continental slope west of the Canadian archipelago): This core recovered 4.96 m of sediment of which the upper 2 m is silty clay to clayey silt with dispersed sand and granules. This upper section has an irregular, sharp basal contact with an underlying 16-cm-thick clast-supported massive gravel. The gravel has a scoured basal contact and overlies a monotonous gray clayey silt containing dispersed granules of IRD. Sparse and poorly preserved fauna throughout all the cores make age determination difficult; however, given the paucity of sediment cores in the Arctic Ocean, these samples provide vital geophysical groundtruth and sedimentological information about the basin.

Experimental Study on Environment Friendly Tap Hole Clay for Blast Furnace

NASA Astrophysics Data System (ADS)

Siva kumar, R.; Mohammed, Raffi; Srinivasa Rao, K.

2018-03-01

Blast furnace (BF) is the best possible route of iron production available. Blast furnace is a high pressure vessel where iron ore is melted and liquid iron is produced. The liquid iron is tapped through the hole in Blast Furnace called tap hole. The tapped liquid metal flowing through the tap hole is plugged using a clay called tap hole clay. Tap hole clay (THC) is a unshaped refractory used to plug the tap hole. The tap hole clay extruded through the tap hole using a gun. The tap hole clay is designed to expand and plug the tap hole. The tap hole filled with clay is drilled using drill bit and the hole made through the tap hole to tap the liquid metal accumulated inside the furnace. The number of plugging and drilling varies depending on the volume of the furnace. The tap hole clay need to have certain properties to avoid problems during plugging and drilling. In the present paper tap hole clay properties in industrial use was tested and studied. The problems were identified related to tap hole clay manufacturing. Experiments were conducted in lab scale to solve the identified problems. The present composition was modified with experimental results. The properties of the modified tap hole clay were found suitable and useful for blast furnace operation with lab scale experimental results.

Understanding the Groundwater Hydrology of a Geographically-Isolated Prairie Fen: Implications for Conservation

PubMed Central

Sampath, Prasanna Venkatesh; Liao, Hua-Sheng; Curtis, Zachary Kristopher; Doran, Patrick J.; Herbert, Matthew E.; May, Christopher A.; Li, Shu-Guang

2015-01-01

The sources of water and corresponding delivery mechanisms to groundwater-fed fens are not well understood due to the multi-scale geo-morphologic variability of the glacial landscape in which they occur. This lack of understanding limits the ability to effectively conserve these systems and the ecosystem services they provide, including biodiversity and water provisioning. While fens tend to occur in clusters around regional groundwater mounds, Ives Road Fen in southern Michigan is an example of a geographically-isolated fen. In this paper, we apply a multi-scale groundwater modeling approach to understand the groundwater sources for Ives Road fen. We apply Transition Probability geo-statistics on more than 3000 well logs from a state-wide water well database to characterize the complex geology using conditional simulations. We subsequently implement a 3-dimensional reverse particle tracking to delineate groundwater contribution areas to the fen. The fen receives water from multiple sources: local recharge, regional recharge from an extensive till plain, a regional groundwater mound, and a nearby pond. The regional sources deliver water through a tortuous, 3-dimensional “pipeline” consisting of a confined aquifer lying beneath an extensive clay layer. Water in this pipeline reaches the fen by upwelling through openings in the clay layer. The pipeline connects the geographically-isolated fen to the same regional mound that provides water to other fen clusters in southern Michigan. The major implication of these findings is that fen conservation efforts must be expanded from focusing on individual fens and their immediate surroundings, to studying the much larger and inter-connected hydrologic network that sustains multiple fens. PMID:26452279

Monitoring electrical properties for improving the lithological and hydrological characterization of landslides

NASA Astrophysics Data System (ADS)

Malet, J. P.; Gance, J.; Lajaunie, M.; Gallistl, J.; Denchik, N.; Flores Orozco, A.; Ottowitz, D.; Supper, R.; Sailhac, P.; Gautier, S.; Schmutz, M.

2017-12-01

Imaging water flows in landslides is of critical importance as the distribution of pore-fluid pressures controls the dynamics (acceleration, deceleration) of the material. Detecting and imaging water is a difficult task, not only because of the complex topography and the small dimensions of the geological structures, but also because the landslide material consists of unsaturated porous and heterogeneous fractured media, leading to multi-scale water-flow properties. Further, these properties can change in time, in relation to temperature, rainfall and biological forcings. Electrical properties are relevant proxies of the sub-surface hydrological properties. In order to image water in landslide bodies, we propose to combine multi-frequency electrical and electromagnetic measurements using campaigns or permanent instruments, and surface/boreole investigations, installed on several unstable slopes in France. To evaluate the information gained from electrical properties for different geological conditions, we discuss electrical and electro-magnetic imaging results for data collected at four different landslides located in France (Super-Sauze and La Valette in the South East Alps, Lodève lin the southern border of the Massif Central Massif, and Séchilienne in the North French Alps). Time-lapse electrical DC resistivity observations, complex electrical conductivity (conduction and polarization/chargeability) measured by IP imaging methods, and controlled-source electromagnetic (CS-AMT) methods are discussed. Imaging results demonstrate an improved lithological characterization of the landslide structures (delineation of the sliding planes, identification of the fractures, discrimination of clay lenses with enhanced resolution); further, water infiltration within the soil matrix and/or the fractures is discriminated allowing better modelling of the hydrological regime of the landslides at the slope scale. This research is conducted in the frame of the project HYDROSLIDE - Hydrogeophysical Monitoring of Clay-Rich Landslides funded by the Austrian Science Fund (FWF) and the French Research Agency (ANR).

Clay, Water, and Salt: Controls on the Permeability of Fine-Grained Sedimentary Rocks.

PubMed

Bourg, Ian C; Ajo-Franklin, Jonathan B

2017-09-19

The ability to predict the permeability of fine-grained soils, sediments, and sedimentary rocks is a fundamental challenge in the geosciences with potentially transformative implications in subsurface hydrology. In particular, fine-grained sedimentary rocks (shale, mudstone) constitute about two-thirds of the sedimentary rock mass and play important roles in three energy technologies: petroleum geology, geologic carbon sequestration, and radioactive waste management. The problem is a challenging one that requires understanding the properties of complex natural porous media on several length scales. One inherent length scale, referred to hereafter as the mesoscale, is associated with the assemblages of large grains of quartz, feldspar, and carbonates over distances of tens of micrometers. Its importance is highlighted by the existence of a threshold in the core scale mechanical properties and regional scale energy uses of shale formations at a clay content X clay ≈ 1/3, as predicted by an ideal packing model where a fine-grained clay matrix fills the gaps between the larger grains. A second important length scale, referred to hereafter as the nanoscale, is associated with the aggregation and swelling of clay particles (in particular, smectite clay minerals) over distances of tens of nanometers. Mesoscale phenomena that influence permeability are primarily mechanical and include, for example, the ability of contacts between large grains to prevent the compaction of the clay matrix. Nanoscale phenomena that influence permeability tend to be chemomechanical in nature, because they involve strong impacts of aqueous chemistry on clay swelling. The second length scale remains much less well characterized than the first, because of the inherent challenges associated with the study of strongly coupled nanoscale phenomena. Advanced models of the nanoscale properties of fine-grained media rely predominantly on the Derjaguin-Landau-Verwey-Overbeek (DLVO) theory, a mean field theory of colloidal interactions that accurately predicts clay swelling in a narrow range of conditions (low salinity, low compaction, Na + counterion). An important feature of clay swelling that is not predicted by these models is the coexistence, in most conditions of aqueous chemistry and dry bulk density, of two types of pores between parallel smectite particles: mesopores with a pore width of >3 nm that are controlled by long-range interactions (the osmotic swelling regime) and nanopores with a pore width <1 nm that are controlled by short-range interactions (the crystalline swelling regime). Nanogeochemical characterization and simulation techniques, including coarse-grained and all-atom molecular dynamics simulations, hold significant promise for the development of advanced constitutive relations that predict this coexistence and its dependence on aqueous chemistry.

Design and testing of a pilot scale magnetic separator for the treatment of textile dyeing wastewater.

PubMed

Salinas, Tobías; Durruty, Ignacio; Arciniegas, Lorena; Pasquevich, Gustavo; Lanfranconi, Matías; Orsi, Isabela; Alvarez, Vera; Bonanni, Sebastian

2018-07-15

Iron nanoparticles can be incorporated on the structure of natural clays to obtain magnetic clays, an adsorbent that be easily removed from a wastewater by magnetic means. Magnetic clays have high adsorption capacities of different contaminants such as heavy metals, fungicides, aromatic compounds and colorants and show rapid adsorption kinetics, but crucial data for achieving its full or pilot scale application is still lacking. In this work, magnetic bentonites with different amounts of magnetite (iron fractions on the clay of 0.55, 0.6 and 0.6) were used to remove color from a real textile wastewater. On a first stage the optimal conditions for the adsorption of the dye, including pH, temperature and clay dosage were determined. Also design parameters for the separation process such as residence time, distance from magnet to magnetic clay and magnet strength were obtained. Finally a pilot scale magnetic drum separator was constructed and tested. A removal of 60% of the dye from a wastewater that contained more than 250 ppm of azo dye was achieved with only 10 min of residence time inside the separator. Copyright © 2018 Elsevier Ltd. All rights reserved.

Application of multiple-point geostatistics to simulate the effect of small-scale aquifer heterogeneity on the efficiency of aquifer thermal energy storage

NASA Astrophysics Data System (ADS)

Possemiers, Mathias; Huysmans, Marijke; Batelaan, Okke

2015-08-01

Adequate aquifer characterization and simulation using heat transport models are indispensible for determining the optimal design for aquifer thermal energy storage (ATES) systems and wells. Recent model studies indicate that meter-scale heterogeneities in the hydraulic conductivity field introduce a considerable uncertainty in the distribution of thermal energy around an ATES system and can lead to a reduction in the thermal recoverability. In a study site in Bierbeek, Belgium, the influence of centimeter-scale clay drapes on the efficiency of a doublet ATES system and the distribution of the thermal energy around the ATES wells are quantified. Multiple-point geostatistical simulation of edge properties is used to incorporate the clay drapes in the models. The results show that clay drapes have an influence both on the distribution of thermal energy in the subsurface and on the efficiency of the ATES system. The distribution of the thermal energy is determined by the strike of the clay drapes, with the major axis of anisotropy parallel to the clay drape strike. The clay drapes have a negative impact (3.3-3.6 %) on the energy output in the models without a hydraulic gradient. In the models with a hydraulic gradient, however, the presence of clay drapes has a positive influence (1.6-10.2 %) on the energy output of the ATES system. It is concluded that it is important to incorporate small-scale heterogeneities in heat transport models to get a better estimate on ATES efficiency and distribution of thermal energy.

Application of multiple-point geostatistics to simulate the effect of small scale aquifer heterogeneity on the efficiency of Aquifer Thermal Energy Storage (ATES)

NASA Astrophysics Data System (ADS)

Possemiers, Mathias; Huysmans, Marijke; Batelaan, Okke

2015-04-01

Adequate aquifer characterization and simulation using heat transport models are indispensible for determining the optimal design for Aquifer Thermal Energy Storage (ATES) systems and wells. Recent model studies indicate that meter scale heterogeneities in the hydraulic conductivity field introduce a considerable uncertainty in the distribution of thermal energy around an ATES system and can lead to a reduction in the thermal recoverability. In this paper, the influence of centimeter scale clay drapes on the efficiency of a doublet ATES system and the distribution of the thermal energy around the ATES wells are quantified. Multiple-point geostatistical simulation of edge properties is used to incorporate the clay drapes in the models. The results show that clay drapes have an influence both on the distribution of thermal energy in the subsurface and on the efficiency of the ATES system. The distribution of the thermal energy is determined by the strike of the clay drapes, with the major axis of anisotropy parallel to the clay drape strike. The clay drapes have a negative impact (3.3 - 3.6%) on the energy output in the models without a hydraulic gradient. In the models with a hydraulic gradient, however, the presence of clay drapes has a positive influence (1.6 - 10.2%) on the energy output of the ATES system. It is concluded that it is important to incorporate small scale heterogeneities in heat transport models to get a better estimate on ATES efficiency and distribution of thermal energy.

Multidecadal persistence of organic matter in soils: insights from spatially resolved investigations at the submicrometer scale

NASA Astrophysics Data System (ADS)

Lutfalla, Suzanne; Barré, Pierre; Bernard, Sylvain; Le Guillou, Corentin; Alléon, Julien; Chenu, Claire

2016-04-01

Better understanding the mechanisms responsible for the pluri-decadal persistence of carbon in soils requires well constraining the dynamics, the distribution and the chemical nature of both the soil organic carbon (SOC) and the associated mineral phases. The question we address in this work is whether different mineral species lead to different organo-mineral interactions and stabilize different quantities of SOM and different types of SOC. Here, benefiting from the unique opportunity offered by an INRA long term bare fallow (LTBF) experiment having started in 1928 in Versailles (France), we report the in-situ characterization of SOC dynamics in four clay fractions of this silty loam soil (total clays [TC, <2μm], coarse clays [CC, 0.2-2μm], intermediate clays [IC, 0.05-0.2μm] and fine clays [FC, 0-0.05μm]). The IC and FC fractions only contain smectite and illite/smectite mixed-layered clay minerals while the CC fraction also contains illite and kaolinite. In the absence of any carbon input, the plant-free LTBF clay fractions from Versailles progressively lost SOC during the first 50 years of the experiment, until they reached a seemingly stable concentration. Of note, the investigated clay fractions did not lose the same amount of SOC and do not exhibit the same final carbon concentrations. The decrease of the organic C:N ratios with LTBF duration corresponds to a progressive enrichment in N-rich SOC for all fractions which can be attributed to microbial material. Even though the speciation of SOC appears to only slightly evolve with LTBF duration, an enrichment in carboxyl and carbonyl groups is revealed by bulk-scale C-NEXAFS data for SOC from all clay fractions. In addition, STXM-based NEXAFS investigations at the submicrometer scale reveal three types of SOC-clay assemblages in addition to clay-free SOC and organic-free clays. While SOC appears mostly adsorbed onto clay surfaces within the IC and FC fractions, other protection mechanisms occur within the CC fraction. Altogether, the present study suggests that smectite have more efficient protection capabilities than those of illite and kaolinite.

2500-year Late Holocene vegetation and hydrologic changes from a cave guano-clay sequence in the Danube Gorge, SW Romania

NASA Astrophysics Data System (ADS)

Onac, B. P. P.; Hutchinson, S. M.; Geanta, A.; Forray, F. L.; Wynn, J. G.; Giurgiu, A. M.; Coroiu, I.

2014-12-01

This multi-analytical study on a guano/clay sequence in Gaura cu Muscă Cave (GMC), supported by five 14C AMS dates, brings new insights to both vegetation dynamics and paleo-hydroclimate in a region of archeological and anthropological significance. GMC is located at the entrance to the Danube Gorge in SW Romania. The cave is short (254 m), consisting of a main gallery (along which an underground stream flows) that is bypassed by the Bat's Gallery. GMC is a shelter for bats throughout the year and a hibernaculum for five species. Nowadays, the two major guano deposits belong to Myotis capaccinii; one is located underneath the largest colony in the Bat's Chamber, whilst the other one is much smaller and is found in the Bat's Gallery. From this latter location the investigated clay/guano profile was recovered from underneath a blanket of 2 to 3mm thick fresh guano. We provide sedimentological, geochemical, mineral magnetic, guano and charcoal δ13C data, and pollen-based evidence of fluctuating hydro-climate conditions from ~1230 BC to ~AD 1240. Between 1230 BC and AD 1000 the climate was wetter than present prompting the flooding of the cave, preventing bats from roosting and leading to slow-rate clay accumulation. The pollen diagram for this interval confirms a human presence and agriculture activities in the region. The second half of the Medieval Warm Period (MWP; after AD 1000) the climate became drier, which hydrologically translates in the cave being air-filled. At this time a maternity colony existed in the Bat's Gallery, under which guano accumulated. One extremely wet event occurred ~AD 1170, when Fe/Mn and Ti/Zr ratios show the highest values and coincident with a substantial increase of sediment load in the underground stream. The mineral magnetic characteristics for the second part of the MWP indicate partial input of surface-sourced sediments reflecting the agricultural development and forest clearance in the area. Pollen and microcharcoal studies confirm that the overall vegetation cover and human land use have changed little in this region since medieval times. The recession in overall herbaceous pollen and increase in Artemisia and Tilia pollen at the top of the profile (after AD 1200) could be attributed to the demise of the MWP and the transition to Little Ice Age.

Century to Millennium-Scale Late Quaternary Natural Climate Variability in the Midwestern United States

NASA Astrophysics Data System (ADS)

Jaumann, Peter Josef

1995-01-01

Estimates of past natural climatic variability on long time scales (centuries to millennia) are crucial in testing climate models. The process of model validation takes advantage of long general circulation model (GCM) integrations, instrumental and satellite observations, and paleoclimatic records. Here I use paleoclimatic proxy records from central North America spanning the last 150 ka to characterize climatic variability on sub-orbital time scales. A terrestrial last interglacial (~ 130 to 75 kyr BP) pollen sequence from south-central Illinois, U.S.A., contains climatic variance in frequency bands between 1 cycle/10 kyr and 1 cycle/1 kyr. The temporal variance is best developed as alternating cycles of pollen assemblages indicative of wet and dry conditions. Spectral cross-correlations between selected pollen types and potential forcings (ETP (eccentricity, tilt, precession), SPECMAP delta^{18}O) implicate oceanic and solar processes as possible mechanisms driving last interglacial vegetation and climate change in the Midwestern U.S. During the last glacial stage (LGS; 20 to 16 kyr BP) a lacustrine sequence from the central Mississippi River valley experienced major flooding events caused by intermittent melting of the Laurentide ice sheet. Rock -magnetic and grain size data confirm the physical record of flood clays. Correlation of the flood clays to the Greenland (GRIP) ice core is weak. However, the Laurentide melting events seem to fall temporally between the releases of minor LGS iceberg discharges into the North Atlantic. The GRIP delta^{18}O and the Midwestern U.S. magnetic susceptibility time series indicate sub-Milankovitch climate variability modes. Mapping, multivariate, and time series analyses of Holocene (8 to 1 ka) pollen sequences from central North America suggest spatial patterns of vegetation and climate change on sub-orbital to millennial time scales. The rate, magnitude, and spatial patterns of change varied considerably over the study region. Major climatic variance contained in several well-dated pollen time series ranges between 1 cycle/6 kyr and 1 cycle/0.6 kyr. Singular and cross -spectral analyses, again, suggest solar and oceanic forcing. Although it is difficult to attribute past climatic changes to specific forcings, the geologic record of past global change will prove invaluable in the assessment of long-term future climate change and prediction.

A Scale Model of Cation Exchange for Classroom Demonstration.

ERIC Educational Resources Information Center

Guertal, E. A.; Hattey, J. A.

1996-01-01

Describes a project that developed a scale model of cation exchange that can be used for a classroom demonstration. The model uses kaolinite clay, nails, plywood, and foam balls to enable students to gain a better understanding of the exchange complex of soil clays. (DDR)

Adsorption of reovirus to clay minerals: effects of cation-exchange capacity, cation saturation, and surface area.

PubMed Central

Lipson, S M; Stotzky, G

1983-01-01

The adsorption of reovirus to clay minerals has been reported by several investigators, but the mechanisms defining this association have been studied only minimally. The purpose of this investigation was to elucidate the mechanisms involved with this interaction. More reovirus type 3 was adsorbed, in both distilled and synthetic estuarine water, by low concentrations of montmorillonite than by comparable concentrations of kaolinite containing a mixed complement of cations on the exchange complex. Adsorption to the clays was essentially immediate and was correlated with the cation-exchange capacity of the clays, indicating that adsorption was primarily to negatively charged sites on the clays. Adsorption was greater with low concentrations of clays in estuarine water than in distilled water, as the higher ionic strength of the estuarine water reduced the electrokinetic potential of both clay and virus particles. The addition of cations (as chloride salts) to distilled water enhanced adsorption, with divalent cations being more effective than monovalent cations and 10(-2) M resulting in more adsorption than 10(-3) M. Potassium ions suppressed reovirus adsorption to montmorillonite, probably by collapsing the clay lattices and preventing the expression of the interlayer-derived cation-exchange capacity. More virus was adsorbed by montmorillonite made homoionic to various mono-, di-, and trivalent cations (except by montmorillonite homoionic to potassium) than by comparable concentrations of kaolinite homoionic to the same cations. The sequence of the amount of adsorption to homoionic montmorillonite was Al greater than Ca greater than Mg greater than Na greater than K; the sequence of adsorption to kaolinite was Na greater than Al greater than Ca greater than Mg greater than K. The constant partition-type adsorption isotherms obtained when the clay concentration was maintained constant and the virus concentration was varied indicated that a fixed proportion of the added virus population was adsorbed, regardless of the concentration of infectious particles. A heterogeneity within the reovirus population was indicated. PMID:6639022

Sm-Nd dating of Fig Tree clay minerals of the Barberton greenstone belt, South Africa.

PubMed

Toulkeridis, T; Goldstein, S L; Clauer, N; Kroner, A; Lowe, D R

1994-03-01

Sm-Nd isotopic data from carbonate-derived clay minerals of the 3.22-3.25 Ga Fig Tree Group, Barberton greenstone belt, South Africa, form a linear array corresponding to an age of 3102 +/- 64 Ma, making these minerals the oldest dated clays on Earth. The obtained age is 120-160 m.y. younger than the depositional age determined by zircon geochronology. Nd model ages for the clays range from approximately 3.39 to 3.44 Ga and almost cover the age variation of the Barberton greenstone belt rocks, consistent with independent evidence that the clay minerals are derived from material of the belt. The combined isotopic and mineralogical data provide evidence for a cryptic thermal overprint in the sediments of the belt. However, the highest temperature reached by the samples since the time of clay-mineral formation was <300 degrees C, lower than virtually any known early Archean supracrustal sequence.

Sm-Nd dating of Fig Tree clay minerals of the Barberton greenstone belt, South Africa

NASA Technical Reports Server (NTRS)

Toulkeridis, T.; Goldstein, S. L.; Clauer, N.; Kroner, A.; Lowe, D. R.

1994-01-01

Sm-Nd isotopic data from carbonate-derived clay minerals of the 3.22-3.25 Ga Fig Tree Group, Barberton greenstone belt, South Africa, form a linear array corresponding to an age of 3102 +/- 64 Ma, making these minerals the oldest dated clays on Earth. The obtained age is 120-160 m.y. younger than the depositional age determined by zircon geochronology. Nd model ages for the clays range from approximately 3.39 to 3.44 Ga and almost cover the age variation of the Barberton greenstone belt rocks, consistent with independent evidence that the clay minerals are derived from material of the belt. The combined isotopic and mineralogical data provide evidence for a cryptic thermal overprint in the sediments of the belt. However, the highest temperature reached by the samples since the time of clay-mineral formation was <300 degrees C, lower than virtually any known early Archean supracrustal sequence.

Effect of red clay on diesel bioremediation and soil bacterial community.

PubMed

Jung, Jaejoon; Choi, Sungjong; Hong, Hyerim; Sung, Jung-Suk; Park, Woojun

2014-08-01

Red clay is a type of soil, the red color of which results from the presence of iron oxide. It is considered an eco-friendly material, with many industrial, cosmetic, and architectural uses. A patented method was applied to red clay in order to change its chemical composition and mineral bioavailability. The resulting product was designated processed red clay. This study evaluates the novel use of red clay and processed red clay as biostimulation agents in diesel-contaminated soils. Diesel biodegradation was enhanced in the presence of red clay and processed red clay by 4.9- and 6.7-fold, respectively, and the number of culturable bacterial cells was correlated with the amount of diesel biodegradation. The growth of Acinetobacter oleivorans DR1, Pseudomonas putida KT2440, and Cupriavidus necator was promoted by both types of red clays. Culture-independent community analysis determined via barcoded pyrosequencing indicated that Nocardioidaceae, Xanthomonadaceae, Pseudomonadaceae, and Caulobacteraceae were enriched by diesel contamination. Bacterial strain isolation from naphthalene- and liquid paraffin-amended media was affiliated with enriched taxa based on 16S rRNA gene sequence identity. We suggest that the biostimulating mechanism of red clay and processed red clay is able to support bacterial growth without apparent selection for specific bacterial species.

Hidden Ice Worlds - Pleistocene glacigenic deposits in Essex, England. Application of the novel systematic approach to thin-section description.

NASA Astrophysics Data System (ADS)

Leszczynska, Karolina; Boreham, Julie; Boreham, Steve

2013-04-01

In the 'Hidden Ice Worlds' research project a novel systematic approach for thin-section description (Leszczynska et al., 2011) is applied to analyse the internal structure of 8 m thick periglacially disturbed sequence from the Royal Oak Pit - a small disused quarry in East Anglia, Essex, east of Chelmsford, near Danbury. Danbury Hill is situated on the south-eastern margin of the Elsterian (Anglian) till sheet. This area was glaciated only once, during the Pleistocene, Elsterian (Anglian) glaciation (480-420 ka BP), however two local ice-sheet margin fluctuations are envisaged (inter alia Turner, 1970 and others). The stratigraphical sequence of the Royal Oak Pit comprises: massive gravel, arranged in sheets, overlain by fine silty-clay and silty-sand with ripple marks and planar cross beds, overlain by a 50 cm thick unit of massive gravel gradually changing into periglacially disturbed silty-clayey-gravel with the bottom 50 cm of fine laminated silty clay. This sequence is situated on the lee side of Danbury Hill, at over 50 m OD. This is an atypical location for the periglacially disturbed deposits of such a substantial thickness (up to 8 m), which usually occur in the lower areas. The deposits at this site were investigated at a macro-scale using field-section logging, ground penetrating radar survey, clast lithology, clay mineralogy analysis and loss-on-ignition and at a micro-scale using thin-section analysis. There are two main aims of the project presented: • To describe the genesis and to discern the main processes associated with the formation of the unusually thick periglacially disturbed unit at the Danbury Hill slope and • To test the novel, tree-based, systematic approach as a guiding tool for thin for thin-section description of Quaternary deposits (Leszczynska et al., 2011). The results of the micromorphological analyses of the deposits from the Royal Oak Pit allow a new hypothesis for the origin of the sequence to be put forward. The main process responsible for the evolution of the deposits consist of multiple phases of freezing and thawing of the deposit and associated physical reworking, subsequent to Elsterian (Anglian). Inversion of the topography is proposed as a necessary condition for the formation and preservation of the periglacially disturbed sequence on hill slope at such elevated location. The novel systematic approach proved to be a useful tool in guiding the thin-section description, regardless of the type of the deposit and the aim of the research. Reference: Leszczynska, K., Boreham, J. and Boreham, S., 2011. A novel methodological approach for thin-section description and its application to periglacially disturbed Pleistocene deposits from Danbury, Essex, UK. Netherlands Journal of Geosciences 90: 271-291. Turner, C., 1970. Middle Pleistocene deposits at Marks Tey, Essex. Philosophical Transactions of the Royal Society of London, series B 257: 373-440.

Evaluation of Resuspension from Propeller Wash in DoD Harbors

DTIC Science & Technology

2016-09-01

sand , silt, clay, and dissolved fractions. Information in the middle represents the filtration sequence, information to the left are...San Diego Bay. Each metal is provided as the percentage fraction for clay (grey), silt (green), sand (red) and total (blue), the same pattern is...middle), and sand (bottom) concentrations for the three locations (see Figure 6-33

Shales and geological waste repositories: from microstructure description to macro-scale properties

NASA Astrophysics Data System (ADS)

Tournassat, C.; Steefel, C. I.; Gaboreau, S.

2017-12-01

The mineralogical and chemical properties of clays have been the subject of longstanding study for the long-term disposal of nuclear wastes in geological repositories. The low permeability of clay materials, including shales, provides at least part of the safety functions for radionuclide contaminants confinement. From a geochemical and mineralogical point of view, the high adsorption capacity of clay minerals adds to the effect of low hydraulic conductivities by greatly increasing the retardation of radionuclides and other contaminants, making clays ideal where isolation from the biosphere is desired. While their low permeability and high adsorption capacity are widely acknowledged, it is clear nonetheless that there is a need for an improved understanding of how the chemical and mineralogical properties of shales impact their macroscopic properties. It is at the pore-scale that the chemical properties of clay minerals become important since their electrostatic properties can play a large role. The negative electrostatic potential field at the clay mineral surfaces results in the presence of porosity domains where electroneutrality is not achieved: cations are attracted by the surfaces while anions are repulsed from them, resulting in the presence of a diffuse ion swarm - or diffuse layer. Numerical methods for modeling macroscopic properties of clay media with the consideration of the presence of a diffuse ion swarm have met a growing interest in diverse communities in the past years. In this presentation we will highlight the complex interplays of mineralogical, chemical and microstructural characteristics of clay materials that are ultimately responsible for a remarkable array of macro-scale properties such as specific adsorption, high swelling pressure, semi-permeable membrane properties, and non-Fickian diffusional behavior.

Mixing effects on nitrogen and oxygen concentrations and the relationship to mean residence time in a hyporheic zone of a riffle-pool sequence

USGS Publications Warehouse

Naranjo, Ramon C.; Niswonger, Richard G.; Clinton Davis,

2015-01-01

Flow paths and residence times in the hyporheic zone are known to influence biogeochemical processes such as nitrification and denitrification. The exchange across the sediment-water interface may involve mixing of surface water and groundwater through complex hyporheic flow paths that contribute to highly variable biogeochemically active zones. Despite the recognition of these patterns in the literature, conceptualization and analysis of flow paths and nitrogen transformations beneath riffle-pool sequences often neglect to consider bed form driven exchange along the entire reach. In this study, the spatial and temporal distribution of dissolved oxygen (DO), nitrate (NO3-) and ammonium (NH4+) were monitored in the hyporheic zone beneath a riffle-pool sequence on a losing section of the Truckee River, NV. Spatially-varying hyporheic exchange and the occurrence of multi-scale hyporheic mixing cells are shown to influence concentrations of DO and NO3- and the mean residence time (MRT) of riffle and pool areas. Distinct patterns observed in piezometers are shown to be influenced by the first large flow event following a steady 8 month period of low flow conditions. Increases in surface water discharge resulted in reversed hydraulic gradients and production of nitrate through nitrification at small vertical spatial scales (0.10 to 0.25 m) beneath the sediment-water interface. In areas with high downward flow rates and low MRT, denitrification may be limited. The use of a longitudinal two-dimensional flow model helped identify important mechanisms such as multi-scale hyporheic mixing cells and spatially varying MRT, an important driver for nitrogen transformation in the riverbed. Our observations of DO and NO3- concentrations and model simulations highlight the role of multi-scale hyporheic mixing cells on MRT and nitrogen transformations in the hyporheic zone of riffle-pool sequences. This article is protected by copyright. All rights reserved.

Moving granular-bed filter development program, Option III: Development of moving granular-bed filter technology for multi-contaminant control. Task 14: Test plan; Topical report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Haas, J.C.; Olivo, C.A.; Wilson, K.B.

1994-04-01

An experimental test plan has been prepared for DOE/METC review and approval to develop a filter media suitable for multi-contaminant control in granular-bed filter (GBF) applications. The plan includes identification, development, and demonstration of methods for enhanced media morphology, chemical reactivity, and mechanical strength. The test plan includes media preparation methods, physical and chemical characterization methods for fresh and reacted media, media evaluation criteria, details of test and analytical equipment, and test matrix of the proposed media testing. A filter media composed of agglomerated limestone and clay was determined to be the best candidate for multi-contaminate control in GBF operation.more » The combined limestone/clay agglomerate has the potential to remove sulfur and alkali species, in addition to particulate, and possibly halogens and trace heavy metals from coal process streams.« less

Molecular Mechanisms of Enhanced Bacterial Growth on Hexadecane with Red Clay.

PubMed

Jung, Jaejoon; Jang, In-Ae; Ahn, Sungeun; Shin, Bora; Kim, Jisun; Park, Chulwoo; Jee, Seung Cheol; Sung, Jung-Suk; Park, Woojun

2015-11-01

Red clay was previously used to enhance bioremediation of diesel-contaminated soil. It was speculated that the enhanced degradation of diesel was due to increased bacterial growth. In this study, we selected Acinetobacter oleivorans DR1, a soil-borne degrader of diesel and alkanes, as a model bacterium and performed transcriptional analysis using RNA sequencing to investigate the cellular response during hexadecane utilization and the mechanism by which red clay promotes hexadecane degradation. We confirmed that red clay promotes the growth of A. oleivorans DR1 on hexadecane, a major component of diesel, as a sole carbon source. Addition of red clay to hexadecane-utilizing DR1 cells highly upregulated β-oxidation, while genes related to alkane oxidation were highly expressed with and without red clay. Red clay also upregulated genes related to oxidative stress defense, such as superoxide dismutase, catalase, and glutaredoxin genes, suggesting that red clay supports the response of DR1 cells to oxidative stress generated during hexadecane utilization. Increased membrane fluidity in the presence of red clay was confirmed by fatty acid methyl ester analysis at different growth phases, suggesting that enhanced growth on hexadecane could be due to increased uptake of hexadecane coupled with upregulation of downstream metabolism and oxidative stress defense. The monitoring of the bacterial community in soil with red clay for a year revealed that red clay stabilized the community structure.

Hydration Phase Diagram of Clay Particles from Molecular Simulations.

PubMed

Honorio, Tulio; Brochard, Laurent; Vandamme, Matthieu

2017-11-07

Adsorption plays a fundamental role in the behavior of clays. Because of the confinement between solid clay layers on the nanoscale, adsorbed water is structured in layers, which can occupy a specific volume. The transition between these states is intimately related to key features of clay thermo-hydro-mechanical behavior. In this article, we consider the hydration states of clays as phases and the transition between these states as phase changes. The thermodynamic formulation supporting this idea is presented. Then, the results from grand canonical Monte Carlo simulations of sodium montmorillonite are used to derive hydration phase diagrams. The stability analysis presented here explains the coexistence of different hydration states at clay particle scale and improves our understanding of the irreversibilities of clay thermo-hydro-mechanical behavior. Our results provide insights into the mechanics of the elementary constituents of clays, which is crucial for a better understanding of the macroscopic behavior of clay-rich rocks and soils.

The preglacial sediment record of Lake Ladoga, NW Russia - first results from a multi-proxy study on a 23 m sediment record

NASA Astrophysics Data System (ADS)

Gromig, R.; Melles, M.; Wagner, B.; Krastel, S.; Andreev, A.; Fedorov, G.; Just, J.; Wennrich, V.; Savelieva, L.; Subetto, D.; Shumilovskikh, L.

2016-12-01

The joint German-Russian project 'PLOT - Paleolimnological Transect' aims to recover lake sediment sequences along a more than 6000 km long longitudinal transect across the Eurasian Arctic in order to study the Late Quaternary climatic and environmental history. The eastern end of the PLOT transect is formed by the well-studied record from Lake El'gygytgyn (NE Siberia). Lake Ladoga (N 60°50' E 31°30') is Europe's largest lake, both by size and volume and forms the westernmost end of the transect. Whereas modern sedimentation as well as the Holocene and Late Glacial history of Lake Ladoga have intensely been studied, the preglacial history of the lake is poorly studied to date by sediment cores drilled in the 1930's. A seismic survey of Lake Ladoga in summer 2013 revealed unconformities in the western lake basin, which may separate preglacial sediments in isolated depressions from Late Glacial and Holocene sediment successions above. A 23 m long sediment core (Co1309) was retrieved from one of these depressions. Core Co1309 was investigated by XRF-scanning, magnetic susceptibility measurements, as well as pollen, grain-size, and bio-geochemical analyses. An age-depth model combining radiocarbon, OSL, and paleomagnetic dates is in progress. Both, the pollen results and the OSL ages from the base of the record indicate a deposition during MIS 5e (Eemian). The well sorted reddish sands from this interval contain dinoflagellates suggesting at least brackish conditions, likely due to the existence of a gateway connecting a precursor of the Baltic Sea with the White Sea via Lake Ladoga. The Late Glacial sequence consists of greyish varved clays of decreasing thickness upwards with sporadically intercalated sand layers. The Holocene sequence is composed of brownish diatomaceous silty clay with minor proportions of sand.

The location and extent of exfoliation of clay on the fracture mechanisms in nylon 66-based ternary nanocomposites.

PubMed

Dasari, Aravind; Yu, Zhong-Zhen; Mai, Yiu-Wing; Yang, Mingshu

2008-04-01

The primary focus of this work is to elucidate the location and extent of exfoliation of clay on fracture (under both static and dynamic loading conditions) of melt-compounded nylon 66/clay/SEBS-g-MA ternary nanocomposites fabricated by different blending sequences. Distinct microstructures are obtained depending on the blending protocol employed. The state of exfoliation and dispersion of clay in nylon 66 matrix and SEBS-g-MA phase are quantified and the presence of clay in rubber is shown to have a negative effect on the toughness of the nanocomposites. The level of toughness enhancement of ternary nanocomposites depends on the blending protocol and the capability of different fillers to activate the plastic deformation mechanisms in the matrix. These mechanisms include: cavitation of SEBS-g-MA phase, stretching of voided matrix material, interfacial debonding of SEBS-g-MA particles, debonding of intercalated clay embedded inside the SEBS-g-MA phase, and delamination of intercalated clay platelets. Based on these results, new insights and approaches for the processing of better toughened polymer ternary nanocomposites are discussed.

Selectivity sequences and sorption capacities of phosphatic clay and humus rich soil towards the heavy metals present in zinc mine tailing.

PubMed

Chaturvedi, Pranav Kumar; Seth, Chandra Shekhar; Misra, Virendra

2007-08-25

Sorption efficacy of phosphatic clay and humus rich soil alone and on combination were tested towards heavy metals present in zinc mine tailing (Zawar Zinc Mine), Udaipur (India). Characterization of the zinc mine tailing sample indicated the presence of Pb, Cu, Zn and Mn in the concentration of 637, 186, 720 and 577microg(-1), respectively. For sorption efficacy, the zinc mine tailing soil were properly amended with phosphatic clay and humus rich soil separately and in combination and leachability study was performed by batch experiment at different pH range from 3 to 9. The data showed that the percent leachability of heavy metal in non-amended soil was 75-90%. After amendment with phosphatic clay percent leachability of heavy metals became 35-45%. Further, the addition of humus soil to phosphatic clay decreased the percent leachability up to 5-15% at all tested pH. Column leachability experiment was performed to evaluate the rate of leachability. The shape of cumulative curves of Pb, Cu, Zn and Mn showed an increase in its concavity in following order: PbCu>Zn>Mn. Further, Langmuir isotherms applied for the sorption studies indicated that phosphatic clay in the presence of humus soil had high affinity for Pb followed by Cu, Zn and Mn, with sorption capacities (b) 139.94, 97.02, 83.32 and 67.58microgg(-1), respectively.

Evaluation of Resuspension from Propeller Wash in DoD Harbors

DTIC Science & Technology

2016-09-01

contaminants) concentrations in the total, sand , silt, clay, and dissolved fractions. Information in the middle represents the filtration sequence...April 2012 in San Diego Bay. Each metal is provided as the percentage fraction for clay (grey), silt (green), sand (red) and total (blue), the same...middle), and sand (bottom) concentrations for the three locations (see Figure 6-33

Clays causing adhesion with tool surfaces during mechanical tunnel driving

NASA Astrophysics Data System (ADS)

Spagnoli, G.; Fernández-Steeger, T.; Stanjek, H.; Feinendegen, M.; Post, C.; Azzam, R.

2009-04-01

During mechanical excavation with a tunnel boring machine (TBM) it is possible that clays stick to the cutting wheel and to other metal parts. The resulting delays in the progress of construction work, cause great economic damage and often disputes between the public awarding authorities and executing companies. One of the most important factors to reduce successfully the clay adhesion is the use of special polymers and foams. But why does the clay stick to the metal parts? A first step is to recognize which kind of clay mineralogy shows serious adhesion problems. The mechanical properties of clay and clay suspensions are primarily determined by surface chemistry and charge distribution at the interfaces, which in turn affect the arrangement of the clay structure. As we know, clay is a multi-phase material and its behaviour depends on numerous parameters such as: clay mineralogy, clay fraction, silt fraction, sand fraction, water content, water saturation, Atterberg limits, sticky limit, activity, cation exchange capacity, degree of consolidation and stress state. It is therefore likely that adhesion of clay on steel is also affected by these clay parameters. Samples of clay formations, which caused problems during tunnel driving, will be analyzed in laboratory. Mineralogical analyses (diffractometry, etc.) will be carried out to observe which minerals are responsible for adherence problems. To manipulate the physical properties, batch tests will be carried out in order to eliminate or reduce the adhesion on tool surfaces through variation of the zeta potential. Second step is the performance of vane shear tests on clay samples. Different pore fluid (distilled water, pure NaCl solution, ethanol and methanol) will be used to study the variation of the mechanical behaviour of clay depending on the dielectric constant of the fluids. This project is funded by the German Federal Ministry of Education and Research (BMBF) and the DFG (German Research Foundation) in the frame of the programme GEOTECHNOLOGIEN.

Numerical simulations of sand production in interbedded hydrate-bearing sediments during depressurization

USGS Publications Warehouse

Uchida, Shun; Lin, Jeen-Shang; Myshakin, Evgeniy; Seol, Yongkoo; Collett, Timothy S.; Boswell, Ray

2017-01-01

Geomechanical behavior of hydrate-bearing sediments during gas production is complex, involving changes in hydrate-dependent mechanical properties. When interbedded clay layers are present, the complexity is more pronounced because hydrate dissociation tends to occur preferentially in the sediments adjacent to the clay layers due to clay layers acting as a heat source. This would potentially lead to shearing deformation along the sand/clay contacts and may contribute to solid migration, which hindered past field-scale gas production tests. This paper presents a near-wellbore simulation of sand/clay interbedded hydrate-bearing sediments that have been subjected to depressurization and discusses the effect of clay layers on sand production.

Anchor-Free Localization Method for Mobile Targets in Coal Mine Wireless Sensor Networks

PubMed Central

Pei, Zhongmin; Deng, Zhidong; Xu, Shuo; Xu, Xiao

2009-01-01

Severe natural conditions and complex terrain make it difficult to apply precise localization in underground mines. In this paper, an anchor-free localization method for mobile targets is proposed based on non-metric multi-dimensional scaling (Multi-dimensional Scaling: MDS) and rank sequence. Firstly, a coal mine wireless sensor network is constructed in underground mines based on the ZigBee technology. Then a non-metric MDS algorithm is imported to estimate the reference nodes’ location. Finally, an improved sequence-based localization algorithm is presented to complete precise localization for mobile targets. The proposed method is tested through simulations with 100 nodes, outdoor experiments with 15 ZigBee physical nodes, and the experiments in the mine gas explosion laboratory with 12 ZigBee nodes. Experimental results show that our method has better localization accuracy and is more robust in underground mines. PMID:22574048

Anchor-free localization method for mobile targets in coal mine wireless sensor networks.

PubMed

Pei, Zhongmin; Deng, Zhidong; Xu, Shuo; Xu, Xiao

2009-01-01

Severe natural conditions and complex terrain make it difficult to apply precise localization in underground mines. In this paper, an anchor-free localization method for mobile targets is proposed based on non-metric multi-dimensional scaling (Multi-dimensional Scaling: MDS) and rank sequence. Firstly, a coal mine wireless sensor network is constructed in underground mines based on the ZigBee technology. Then a non-metric MDS algorithm is imported to estimate the reference nodes' location. Finally, an improved sequence-based localization algorithm is presented to complete precise localization for mobile targets. The proposed method is tested through simulations with 100 nodes, outdoor experiments with 15 ZigBee physical nodes, and the experiments in the mine gas explosion laboratory with 12 ZigBee nodes. Experimental results show that our method has better localization accuracy and is more robust in underground mines.

The use of halloysite clay and carboxyl-functionalised multi-walled carbon nanotubes for recombinant LipL32 antigen delivery enhanced the IgG response.

PubMed

Hartwig, Daiane D; Bacelo, Kátia L; Oliveira, Thaís L; Schuch, Rodrigo; Seixas, Fabiana K; Collares, Tiago; Rodrigues, Oscar; Hartleben, Cláudia P; Dellagostin, Odir A

2015-02-01

We studied the feasibility of using halloysite clay nanotubes (HNTs) and carboxyl-functionalised multi-walled carbon nanotubes (COOH-MWCNTs) as antigen carriers to improve immune responses against a recombinant LipL32 protein (rLipL32). Immunisation using the HNTs or COOH-MWCNTs significantly increased the rLipL32-specific IgG antibody titres (p < 0.05) of Golden Syrian hamsters. None of the vaccines tested conferred protection against a challenge using a virulent Leptospira interrogans strain. These results demonstrated that nanotubes can be used as antigen carriers for delivery in hosts and the induction of a humoral immune response against purified leptospiral antigens used in subunit vaccine preparations.

Multi-level machine learning prediction of protein-protein interactions in Saccharomyces cerevisiae.

PubMed

Zubek, Julian; Tatjewski, Marcin; Boniecki, Adam; Mnich, Maciej; Basu, Subhadip; Plewczynski, Dariusz

2015-01-01

Accurate identification of protein-protein interactions (PPI) is the key step in understanding proteins' biological functions, which are typically context-dependent. Many existing PPI predictors rely on aggregated features from protein sequences, however only a few methods exploit local information about specific residue contacts. In this work we present a two-stage machine learning approach for prediction of protein-protein interactions. We start with the carefully filtered data on protein complexes available for Saccharomyces cerevisiae in the Protein Data Bank (PDB) database. First, we build linear descriptions of interacting and non-interacting sequence segment pairs based on their inter-residue distances. Secondly, we train machine learning classifiers to predict binary segment interactions for any two short sequence fragments. The final prediction of the protein-protein interaction is done using the 2D matrix representation of all-against-all possible interacting sequence segments of both analysed proteins. The level-I predictor achieves 0.88 AUC for micro-scale, i.e., residue-level prediction. The level-II predictor improves the results further by a more complex learning paradigm. We perform 30-fold macro-scale, i.e., protein-level cross-validation experiment. The level-II predictor using PSIPRED-predicted secondary structure reaches 0.70 precision, 0.68 recall, and 0.70 AUC, whereas other popular methods provide results below 0.6 threshold (recall, precision, AUC). Our results demonstrate that multi-scale sequence features aggregation procedure is able to improve the machine learning results by more than 10% as compared to other sequence representations. Prepared datasets and source code for our experimental pipeline are freely available for download from: http://zubekj.github.io/mlppi/ (open source Python implementation, OS independent).

Cassini Imaging Science: First Results at Saturn

NASA Astrophysics Data System (ADS)

Porco, C. C.

The Cassini Imaging Science experiment at Saturn will commence in early February, 2004 -- five months before Cassini's arrival at Saturn. Approach observations consist of repeated multi-spectral `movie' sequences of Saturn and its rings, image sequences designed to search for previously unseen satellites between the outer edge of the ring system and the orbit of Hyperion, images of known satellites for orbit refinement, observations of Phoebe during Cassini's closest approach to the satellite, and repeated multi-spectral `movie' sequences of Titan to detect and track clouds (for wind determination) and to sense the surface. During Saturn Orbit Insertion, the highest resolution images (~ 100 m) obtained during the whole orbital tour will be collected of the dark side of the rings. Finally, imaging sequences are planned for Cassini's first Titan flyby, on July 2, from a distance of ~ 350,000 km, yielding an image scale of ~ 2.1 km on the South polar region. The highlights of these observation sequences will be presented.

Slip-flow in complex porous media as determined by a multi-relaxation-time lattice Boltzmann model

NASA Astrophysics Data System (ADS)

Landry, C. J.; Prodanovic, M.; Eichhubl, P.

2014-12-01

The pores and throats of shales and mudrocks are predominantly found within a range of 1-100 nm, within this size range the flow of gas at reservoir conditions will fall within the slip-flow and low transition-flow regime (0.001 < Kn < 0.5). Currently, the study of slip-flows is for the most part limited to simple tube and channel geometries, however, the geometry of mudrock pores is often sponge-like (organic matter) and/or platy (clays). Molecular dynamics (MD) simulations can be used to predict slip-flow in complex geometries, but due to prohibitive computational demand are generally limited to small volumes (one to several pores). Here we present a multi-relaxation-time lattice Boltzmann model (LBM) parameterized for slip-flow (Guo et al. 2008) and adapted here to complex geometries. LBMs are inherently parallelizable, such that flow in complex geometries of significant (near REV-scale) volumes can be readily simulated at a fraction of the computational cost of MD simulations. At the macroscopic-scale the LBM is parameterized with local effective viscosities at each node to capture the variance of the mean-free-path of gas molecules in a bounded system. The corrected mean-free-path for each lattice node is determined using the mean distance of the node to the pore-wall and Stop's correction for mean-free-paths in an infinite parallel-plate geometry. At the microscopic-scale, a combined bounce-back specular-reflection boundary condition is applied to the pore-wall nodes to capture Maxwellian-slip. The LBM simulation results are first validated in simple tube and channel geometries, where good agreement is found for Knudsen numbers below 0.1, and fair agreement is found for Knudsen numbers between 0.1 and 0.5. More complex geometries are then examined including triangular-ducts and ellipsoid-ducts, both with constant and tapering/expanding cross-sections, as well as a clay pore-network imaged from a hydrocarbon producing shale by sequential focused ion-beam scanning electron microscopy. These results are analyzed to determine grid-independent resolutions, and used to explore the relationship between effective permeability and Knudsen number in complex geometries.

A strengthened East Asian Summer Monsoon during Pliocene warmth: Evidence from 'red clay' sediments at Pianguan, northern China

NASA Astrophysics Data System (ADS)

Yang, Shiling; Ding, Zhongli; Feng, Shaohua; Jiang, Wenying; Huang, Xiaofang; Guo, Licheng

2018-04-01

The Pliocene epoch (5.3-2.6 Ma) is the most recent geological interval in which atmospheric CO2 levels were similar to those of the present day (∼400 ppmv). This epoch is therefore considered to be the best ancient analog for predicting a future anthropogenic greenhouse world. In order to determine the response of the East Asian Summer Monsoon (EASM) rainbelt during Pliocene warmth, a 71.9 m-thick aeolian 'red clay' sequence at Pianguan was investigated. Rock magnetic experiments suggest that magnetite of pseudo-single domain size is the dominant remanence carrier in the 'red clay' sequence. Magnetostratigraphic data, constrained by lithostratigraphy, show that the polarity zones of the 'red clay' section correlate with those between subchrons C2An.2r and C3An.2n of the geomagnetic polarity time scale (GPTS), yielding an age range of 6.9-2.9 Ma. The 'red clay' deposits exhibit enhanced weathering intensity over two time intervals, namely 5.23-4.3 Ma and 3.7-2.9 Ma, as evidenced by their well-developed pedogenic characteristics, as well as their high free to total Fe2O3 ratios and high redness (a∗) values, which in turn indicate an increased summer monsoon intensity during most of the Pliocene. Furthermore, the pedogenic characteristics of the well-weathered Pliocene soils were compared with those of paleosol unit S5 (one of the best-developed soil units found in Pleistocene loess) from the Yulin, Luochuan and Lantian sections, which constitute a north-south transect across the Chinese Loess Plateau (CLP). The Pliocene soils at Pianguan show a pedogenic development similar to the S5 (∼0.5 Ma) at Luochuan in the central Plateau, which is located some 3.7° latitude south of Pianguan, but this development is much stronger than that observed at Yulin in the north, and weaker than that seen at Lantian in the south. This may imply a more northerly penetration (∼400 km) of the monsoon rainbelt during Pliocene warmth compared with the Pleistocene interglacial period (∼0.5 Ma ago), supporting the prediction that the EASM rainbelt shifts northward in a warmer world. In addition, our results show that Pliocene warmth was unlikely to have been characterized by a permanent El Niño-like state, but was possibly influenced by a La Niña-like state.

Pore characteristics and their emergent effect on water adsorption and transport in clays using small-angle neutron scattering with contrast variation

NASA Astrophysics Data System (ADS)

Ding, M.; Hartl, M.; Wang, Y.; Hjelm, R.

2013-12-01

In nuclear waste management, clays are canonical materials in the construction of engineered barriers. They are also naturally occurring reactive minerals which play an important role in retention and colloidal facilitated reactive transport in subsurface systems. Knowledge of total and accessible porosity in clays is crucial in determining fluids transport behavior in clays. It will provide fundamental insight on the performance efficiency of specific clays as a barrier material and their role in regulating radionuclide transport in subsurface environments. The aim of the present work is to experimentally investigate the change in pore characteristics of clays as function of moisture content, and to determine their pore character in relation to their water retention capacity. Recent developments in small-angle neutron scattering (SANS) techniques allow quantitative measurement of pore morphology and size distribution of various materials in their pristine state under various sample environments (exposure to solution, high temperature, and so on). Furthermore, due to dramatic different neutron scattering properties of hydrogen and deuterium, one can readily use contrast variation, which is the isotopic labeling with various ratios of H and D (e.g. mixture of H2O/D2O) to highlight or suppress features of the sample. This is particularly useful in the study of complex pore system such as clays. In this study, we have characterized the pore structures for a number of clays including clay minerals and field samples which are relevant to high-level waste systems under various sample environments (e.g., humidity, temperature and pressure) using SANS. Our results suggest that different clays show unique pore features under various sample environments. To distinguish between accessible/non-accessible pores and the nature of pore filling (e.g. the quantity of H2O adsorbed by clays, and the distribution of H2O in relation to pore character) to water, clays were exposed for various periods to a specific humidity (e.g., relative humidity: RH=100%, RH=75%). The humidity is controlled by using saturated aqueous solutions, consisting of specific H2O/D2O mixtures. Our results have shown distinct variations in water adsorption and moisture diffusivity among clays. Our results allow us to obtain on the pore scale porosity changes due to water movement in clays. As emergent transport property, nano- to micro-scale structural characterization is crucial in providing insights into pore-scale transport processes, which are pertinent to upscale continuum model development involving flow and transport at low water content, flow and phase behavior under confinement, and low-permeability media.

Annual water, sediment, nutrient, and organic carbon fluxes in river basins: A global meta-analysis as a function of scale

NASA Astrophysics Data System (ADS)

Mutema, M.; Chaplot, V.; Jewitt, G.; Chivenge, P.; Blöschl, G.

2015-11-01

Process controls on water, sediment, nutrient, and organic carbon exports from the landscape through runoff are not fully understood. This paper provides analyses from 446 sites worldwide to evaluate the impact of environmental factors (MAP and MAT: mean annual precipitation and temperature; CLAY and BD: soil clay content and bulk density; S: slope gradient; LU: land use) on annual exports (RC: runoff coefficients; SL: sediment loads; TOCL: organic carbon losses; TNL: nitrogen losses; TPL: phosphorus losses) from different spatial scales. RC was found to increase, on average, from 18% at local scale (in headwaters), 25% at microcatchment and subcatchment scale (midreaches) to 41% at catchment scale (lower reaches of river basins) in response to multiple factors. SL increased from microplots (468 g m-2 yr-1) to plots (901 g m-2 yr-1), accompanied by decreasing TOCL and TNL. Climate was a major control masking the effects of other factors. For example, RC, SL, TOCL, TNL, and TPL tended to increase with MAP at all spatial scales. These variables, however, decreased with MAT. The impact of CLAY, BD, LU, and S on erosion variables was largely confined to the hillslope scale, where RC, SL, and TOCL decreased with CLAY, while TNL and TPL increased. The results contribute to better understanding of water, nutrient, and carbon cycles in terrestrial ecosystems and should inform river basin modeling and ecosystem management. The important role of spatial climate variability points to a need for comparative research in specific environments at nested spatiotemporal scales.

Beyond clay: Towards an improved set of variables for predicting soil organic matter content

USGS Publications Warehouse

Rasmussen, Craig; Heckman, Katherine; Wieder, William R.; Keiluweit, Marco; Lawrence, Corey R.; Berhe, Asmeret Asefaw; Blankinship, Joseph C.; Crow, Susan E.; Druhan, Jennifer; Hicks Pries, Caitlin E.; Marin-Spiotta, Erika; Plante, Alain F.; Schadel, Christina; Schmiel, Joshua P.; Sierra, Carlos A.; Thompson, Aaron; Wagai, Rota

2018-01-01

Improved quantification of the factors controlling soil organic matter (SOM) stabilization at continental to global scales is needed to inform projections of the largest actively cycling terrestrial carbon pool on Earth, and its response to environmental change. Biogeochemical models rely almost exclusively on clay content to modify rates of SOM turnover and fluxes of climate-active CO2 to the atmosphere. Emerging conceptual understanding, however, suggests other soil physicochemical properties may predict SOM stabilization better than clay content. We addressed this discrepancy by synthesizing data from over 5,500 soil profiles spanning continental scale environmental gradients. Here, we demonstrate that other physicochemical parameters are much stronger predictors of SOM content, with clay content having relatively little explanatory power. We show that exchangeable calcium strongly predicted SOM content in water-limited, alkaline soils, whereas with increasing moisture availability and acidity, iron- and aluminum-oxyhydroxides emerged as better predictors, demonstrating that the relative importance of SOM stabilization mechanisms scales with climate and acidity. These results highlight the urgent need to modify biogeochemical models to better reflect the role of soil physicochemical properties in SOM cycling.

Evolution of ribozymes in the presence of a mineral surface

PubMed Central

Stephenson, James D.; Popović, Milena; Bristow, Thomas F.

2016-01-01

Mineral surfaces are often proposed as the sites of critical processes in the emergence of life. Clay minerals in particular are thought to play significant roles in the origin of life including polymerizing, concentrating, organizing, and protecting biopolymers. In these scenarios, the impact of minerals on biopolymer folding is expected to influence evolutionary processes. These processes include both the initial emergence of functional structures in the presence of the mineral and the subsequent transition away from the mineral-associated niche. The initial evolution of function depends upon the number and distribution of sequences capable of functioning in the presence of the mineral, and the transition to new environments depends upon the overlap between sequences that evolve on the mineral surface and sequences that can perform the same functions in the mineral's absence. To examine these processes, we evolved self-cleaving ribozymes in vitro in the presence or absence of Na-saturated montmorillonite clay mineral particles. Starting from a shared population of random sequences, RNA populations were evolved in parallel, along separate evolutionary trajectories. Comparative sequence analysis and activity assays show that the impact of this clay mineral on functional structure selection was minimal; it neither prevented common structures from emerging, nor did it promote the emergence of new structures. This suggests that montmorillonite does not improve RNA's ability to evolve functional structures; however, it also suggests that RNAs that do evolve in contact with montmorillonite retain the same structures in mineral-free environments, potentially facilitating an evolutionary transition away from a mineral-associated niche. PMID:27793980

Fault imprint in clay units: magnetic fabric, structural and mineralogical signature

NASA Astrophysics Data System (ADS)

Moreno, Eva; Homberg, Catherine; Schnyder, Johann; Person, Alain; du Peloux1, Arthur; Dick, Pierre

2014-05-01

Fault-induced deformations in clay units can be difficult to decipher because strain markers are not always visible at outcrop scale or using geophysical methods. Previous studies have indicated that the anisotropy of magnetic susceptibility (ASM) provides a powerful and rapid technique to investigate tectonic deformation in clay units even when they appear quite homogenous and undeformed at the outcrop scale (Lee et al. 1990, Mattei et al. 1997). We report here a study based on ASM, structural analysis and magnetic and clay mineralogy from two boreholes (TF1 and ASM1)drilled horizontally in the Experimental Station of Tournemire of the Institute for Radiological Protection and Nuclear Safety (IRSN) in Aveyron (France). The boreholes intersect a N-S trending strike-slip fault from west to east. The ASM study indicates the evolution of the magnetic fabric from the undeformed host rock to the fault core. Also, all the fractures cutting the studied interval of the core have been measured as well as the slip vectors which are generally well preserved. In the two boreholes, the undeformed sediments outside the fault zone are characterized by an oblate fabric, a sub-vertical minimum susceptibility axis (k3) perpendicular to the bedding plane and without magnetic lineation. Within the fault zone, a tilt in the bedding plane has been observed in two boreholes TF1 and ASM1. In addition, in the TF1 core, the fault area presents a tectonic fabric characterized by a triaxial AMS ellipsoid. Moreover, the magnetic lineation increases and k3 switches from a vertical to a sub-horizontal plane. This kind of fabric has not been observed in borehole ASM1. The structural analysis of the individual fractures making the fault zone indicates a complex tectonic history with different imprint in the two fault segments cut by the two boreholes. The large majority of fractures correspond to dextral strike-slip faults but normal and reverse movements were observed and are more or less frequent depending on the borehole. Notably, many fractures are low angle faults (dip<45°) and may bear both strike-slip or normal striae. The mineralogical study based on X-ray diffraction analysis, have pointed out some variations in clay minerals associations nearby the deformed zones that may be the result of fluid circulation along the fault system which is in agreement with the presence of goethite determined by low magnetic temperature measurements. This multi-proxi study, combining ASM, petrostructural and mineralogical approaches has highlighted the heterogeneity of the fault, but also its past role as a drain to fluid circulation.

Deblurring sequential ocular images from multi-spectral imaging (MSI) via mutual information.

PubMed

Lian, Jian; Zheng, Yuanjie; Jiao, Wanzhen; Yan, Fang; Zhao, Bojun

2018-06-01

Multi-spectral imaging (MSI) produces a sequence of spectral images to capture the inner structure of different species, which was recently introduced into ocular disease diagnosis. However, the quality of MSI images can be significantly degraded by motion blur caused by the inevitable saccades and exposure time required for maintaining a sufficiently high signal-to-noise ratio. This degradation may confuse an ophthalmologist, reduce the examination quality, or defeat various image analysis algorithms. We propose an early work specially on deblurring sequential MSI images, which is distinguished from many of the current image deblurring techniques by resolving the blur kernel simultaneously for all the images in an MSI sequence. It is accomplished by incorporating several a priori constraints including the sharpness of the latent clear image, the spatial and temporal smoothness of the blur kernel and the similarity between temporally-neighboring images in MSI sequence. Specifically, we model the similarity between MSI images with mutual information considering the different wavelengths used for capturing different images in MSI sequence. The optimization of the proposed approach is based on a multi-scale framework and stepwise optimization strategy. Experimental results from 22 MSI sequences validate that our approach outperforms several state-of-the-art techniques in natural image deblurring.

The use of halloysite clay and carboxyl-functionalised multi-walled carbon nanotubes for recombinant LipL32 antigen delivery enhanced the IgG response

PubMed Central

Hartwig, Daiane D; Bacelo, Kátia L; Oliveira, Thaís L; Schuch, Rodrigo; Seixas, Fabiana K; Collares, Tiago; Rodrigues, Oscar; Hartleben, Cláudia P; Dellagostin, Odir A

2015-01-01

We studied the feasibility of using halloysite clay nanotubes (HNTs) and carboxyl-functionalised multi-walled carbon nanotubes (COOH-MWCNTs) as antigen carriers to improve immune responses against a recombinant LipL32 protein (rLipL32). Immunisation using the HNTs or COOH-MWCNTs significantly increased the rLipL32-specific IgG antibody titres (p < 0.05) of Golden Syrian hamsters. None of the vaccines tested conferred protection against a challenge using a virulent Leptospira interrogans strain. These results demonstrated that nanotubes can be used as antigen carriers for delivery in hosts and the induction of a humoral immune response against purified leptospiral antigens used in subunit vaccine preparations. PMID:25742273

The Effect of Treatment with Hydrogen Peroxide and the Mehra-Jackson Reagent on X-ray Diffraction Patterns of Clay Fractions

NASA Astrophysics Data System (ADS)

Sokolova, T. A.; Tolpeshta, I. I.; Izosimova, Yu. G.; Umnova, V. A.; Lashukov, P. V.

2017-12-01

X-ray diffraction patterns of clay fractions from the AEL and EL horizons of pale-podzolic soil before and after treatment with 10% H2O2 and the Mehra-Jackson reagent in different sequences have been examined. The successive treatment with 10% H2O2 and then with the Mehra-Jackson reagent causes dissolution of Al-hydroxy-interlayers in pedogenic chlorites and the respective increase in the content of labile minerals because of a dramatic decrease in pH upon the treatment with hydrogen peroxide. The rate of these changes depends on the degree of chloritization of pedogenic chlorites in the initial samples. The result of the reverse sequence of the treatments of clay fractions (initially with the Mehra-Jackson reagent and then with hydrogen peroxide) is opposite: the chloritization of labile minerals becomes more intensive. It is provided by pH values that do not drop below 7.5 at any treatment stage. At particular stages, pH values favors the mobilization of Al compounds and their subsequent polymerization in the interlayer space of labile structures. We suppose that hydroxyl-aluminosilicate layers may be formed in the interlayer space upon this treatment sequence.

Macro-scale deformation behavior and characterization of deformation mechanisms below µm-scale in experimentally deformed Boom Clay by using the combination of triaxial compression, X-ray µ-CT imaging, DIC, BIB cross sectioning, and SEM

NASA Astrophysics Data System (ADS)

Oelker, Anne; Desbois, Guillaume; Urai, Janos L.; Bésuelle, Pierre; Viggiani, Gioacchino; Levasseur, Séverine

2017-04-01

Boom Clay is one formation being studied in Belgium as a potential host rock for deep geological disposal of radioactive waste. This poorly indurated clay presents in its natural state favorable properties against the migration of radionuclides: low permeability, low solute diffusion rates, good retention and sorption capacity for many radionuclides and good self-sealing capacity. During construction of disposal galleries, stress redistribution will lead to perturbation of the clay and the formation around galleries of the so-called "Excavation disturbed Zone" (EdZ). The study of deformation mechanisms and evolution of Boom Clay properties at macro but also micro scale allows to assess in a more mechanistic way the evolution of Boom Clay properties in this EdZ. In this work, we show microstructural investigations of Boom Clay deformed in undrained triaxial compression by linking conventional stress/strain curves with Digital Image Correlation (DIC) and scanning electron microscopy (SEM) imaging of broad-ion-beam (BIB) milled cross-sections to deduce deformation mechanisms based on microstructures at sub-micron resolution. Two specimens, collected in Mol (Belgium) at the European Underground Laboratories (URL) on HADES level, were analyzed: The major principal stress σ1 was applied parallel as well as perpendicular to the bedding direction with an initial mean normal effective stress of 4.5 MPa and an initial pore water pressure of 2.3 MPa, which are equal to the in-situ values. Linking the resulting DIC-derived maps of incremental strains with the corresponding stress/strain curve give not only information about the moment of the shear band development, but also on the way strain evolves within the specimen throughout the rest. Incremental DIC analysis of X-ray tomographic scans performed during loading tests give a time evolution of the strain field, and subsequently allow to detect strain localization which appears close to the stress peak. Regions with a comparable high and low shear strain were chosen and prepared for BIB-SEM investigations. In this case, shear bands show typical characteristics of uncemented small-grained clay-rich materials deformed at high shear strains including anastomosing shears. At nano-scale, the preferential orientation of clay particles in the anastomosing shears are construed to be responsible for the shear weakness. In addition, the reorientation of clay particles during the deformation leads to the strong reduction of porosity in the shear band. Ductile deformation mechanisms represented by grain-rotation, grain-sliding, bending, and granular flow are strongly involved for the development of the shear band.

Sediment management and renewability of floodplain clay for structural ceramics

NASA Astrophysics Data System (ADS)

van der Meulen, M. J.; Wiersma, A. P.; Middelkoop, H.; van der Perk, M.; Bakker, M.; Maljers, D.; Hobo, N.; Makaske, B.

2009-04-01

The Netherlands have vast resources of clay that are exploited for the fabrication of structural ceramic products such as bricks and roof tiles. The extraction of clay creates land surface lowerings of about 1.5 m, of which the majority are located in the embanked floodplains of the rivers Rhine and Meuse. At these surface lowerings, clay is replenished within several decades. This study explores to which extent the clay can be regarded as a renewable resource, with potential for sustainable use. For this purpose, first the current and past clay consumption is calculated. Subsequently, clay deposition in the floodplains is estimated from literature data on clay accumulation using sediment traps, heavy metal and radionuclide distribution in soil profiles, and from morphological modelling studies. These estimates of clay-deposition and consumption are then compared following three approaches that consider various temporal and spatial scales of clay deposition. This allows us to establish the extent to which man determines sedimentary processes in the Dutch floodplains. Consequently, using the sediment response to the land surface lowering resulting from clay extraction, we explore sediment management options for the Dutch Rhine and Meuse. Altogether we argue that clay has been, probably is, and certainly can be managed as a renewable mineral resource.

Supervised classification of brain tissues through local multi-scale texture analysis by coupling DIR and FLAIR MR sequences

NASA Astrophysics Data System (ADS)

Poletti, Enea; Veronese, Elisa; Calabrese, Massimiliano; Bertoldo, Alessandra; Grisan, Enrico

2012-02-01

The automatic segmentation of brain tissues in magnetic resonance (MR) is usually performed on T1-weighted images, due to their high spatial resolution. T1w sequence, however, has some major downsides when brain lesions are present: the altered appearance of diseased tissues causes errors in tissues classification. In order to overcome these drawbacks, we employed two different MR sequences: fluid attenuated inversion recovery (FLAIR) and double inversion recovery (DIR). The former highlights both gray matter (GM) and white matter (WM), the latter highlights GM alone. We propose here a supervised classification scheme that does not require any anatomical a priori information to identify the 3 classes, "GM", "WM", and "background". Features are extracted by means of a local multi-scale texture analysis, computed for each pixel of the DIR and FLAIR sequences. The 9 textures considered are average, standard deviation, kurtosis, entropy, contrast, correlation, energy, homogeneity, and skewness, evaluated on a neighborhood of 3x3, 5x5, and 7x7 pixels. Hence, the total number of features associated to a pixel is 56 (9 textures x3 scales x2 sequences +2 original pixel values). The classifier employed is a Support Vector Machine with Radial Basis Function as kernel. From each of the 4 brain volumes evaluated, a DIR and a FLAIR slice have been selected and manually segmented by 2 expert neurologists, providing 1st and 2nd human reference observations which agree with an average accuracy of 99.03%. SVM performances have been assessed with a 4-fold cross-validation, yielding an average classification accuracy of 98.79%.

A Quaternary paleolake in a sinkhole at Cassis (SE France) : a geomorphology and geophysical study

NASA Astrophysics Data System (ADS)

Romey, C.; Rochette, P.; Vella, C.; Arfib, B.; Champollion, C.; Dussouillez, P.; Hermitte, D.; Parisot, J.-C.

2012-04-01

The Lower Provence and the Massif des Calanques, near Marseille, are a key area in understanding the mechanisms of evolution of the Mediterranean climate and the study of human impact on the local environment during the Quaternary. However, a continuous continental record of paleoenvironment in coastal Provence was not previously available. Looking for such a record, we discovered in a coastal alluvial plain a small paleolake filling a sinkhole that occurred in a marl sequence topping pure limestones at an altitude of 80 m, and a distance to the sea of 2 km. The sinkhole is close to the outlet of a small catchment area of about 8 km2. Limestone is massive but much fractured and therefore suitable for the development of karst. The drilling sedimentary sequence of 50 meters is mainly resulting from the weathering of Cretaceous marls. It consists of 5 meters of oxidized brown clay deposit which covers 45 meters of laminated lacustrine gray clay with sandy past. Cretaceous marls are at the base of the sequence. The presence of marls pebbles in the last meters of the sequence reflects the collapse of the sinkhole. The lacustrine clay was probably deposed during stages isotope 2 to 4 (48 ± 3 ka C14 date at 23 meters depth), whereas brown clay deposit was interpreted as Holocene paleosol. Combination of surface observation, drilling and geophysical studies (gravimetry and Electrical Resistivity Tomography) allows to constraint the geometry of the paleo-polje that formed during glacial period. Lake diameter was likely of the order of 200 m. It evolved from a deep lake to a swamp (probably Holocene, dating in progress) and it was drained in roman times for agriculture. Locally, this discovery has implications for the understanding of karst processes and water resources. The relationship between the sinkhole, rooted at circa 100 m below surface according to gravimetric modeling and the underground karstic river of Bestouan is strongly suggested by underwater exploration and hydrogeologic investigations.

Sedimentary Basin Structure of the Hadar Formation's Lacustrine-Dominated Depocenter (Ledi-Geraru, Afar, Ethiopia) and its Relevance for Investigating Hominin Paleoenvironments

NASA Astrophysics Data System (ADS)

Dimaggio, E. N.; Campisano, C. J.; Arrowsmith, J. R.; Dupont-Nivet, G.; Johnson, R. A.; Warren, M. B.

2008-12-01

Sedimentary sequences preserved in East African rift basins record the long-term response of past depositional environments to climatic and tectonic forcing. Motivations for recent field investigations at the Ledi-Geraru site, part of the greater Hadar sedimentary basin in the Afar region of Ethiopia, stem from a need to characterize local basin structure and expand and refine interpretations of the complex mid-late Pliocene history of local and regional-scale landscape change during a time of critical importance for understanding hominin evolution. Detailed geologic mapping (1:7,000), measured stratigraphic sections, and seismic reflection surveys provide the datasets necessary for basin evaluation. The Ledi-Geraru sedimentary sequence (>250m thick) exposes nearly the entirety of the hominin-bearing Hadar Formation of west- central Afar. Both primary unmodified lake deposits and intervals modified by subsequent subaerial exposure and pedogenesis are well-exposed. The lacustrine-dominated signature is indicated by the prevalence of laminated silty clays that contain leaf impressions, fish scales, and gastropod shells, undisturbed laminated diatomite and clays, and pedogenically modified diatomaceous silts. The sequence is generally flat lying, with low bedding dips ranging from 0-2° NNW to <1° NNE and minor NNW trending faults with <5 m vertical offset. Whereas coeval fluvio-lacustrine sediments associated with hominin and archaeological sites west of Ledi-Geraru (e.g., Hadar and Gona) are marked by comparatively slow and episodic sedimentation, sedimentation rates in the Ledi-Geraru sequence are extremely high and consistent, on the order of ~0.9-1.0mm/yr. Laterally extensive tephra marker beds and paleomagnetic records provide excellent age control for sedimentation rate estimates and correlation to nearby fossil-rich sequences. As the Hadar basin sediments preserve a rich paleoanthropologic and archaeological record, this work provides the geologic framework necessary for a proposed (2011) continental drilling effort to obtain a near-continuous, ultra-high resolution terrestrial record of past climate variability from multiple paleo-lake basins in East Africa, including the Ledi-Geraru. A seismic reflection survey was completed there in spring 2008, below the planned drilling site. Gently east-dipping coherent reflections interpreted to be from the Ledi-Geraru sedimentary sequence are imaged in the seismic data to at least 0.2 to 0.3 s (two-way travel time). Preliminary average velocities of about 2000 m/s suggest a sequence thickness of 200-300 m. Furthermore, there is no indication of large-offset faults or of buried basalt ridges that would disrupt or reduce the stratigraphic column available for coring. The anticipated cores from Ledi-Geraru should yield a high-resolution chronostratigraphic framework and paleoenvironmental record from >3.5 to 2.9Ma. Combined geologic and seismic evaluations of depositional sequences are central for evaluating the geometry, tectonic evolution, and stratigraphic history of basins and facilitate interpretations of the space-time progression of evolving paleosurfaces.

CIRF.B Reaction-Transport-Mechanical Simulator: Applications to CO2 Injection and Reservoir Integrity Prediction

NASA Astrophysics Data System (ADS)

Park, A. J.; Tuncay, K.; Ortoleva, P. J.

2003-12-01

An important component of CO2 sequestration in geologic formations is the reactions between the injected fluid and the resident geologic material. In particular, carbonate mineral reaction rates are several orders of magnitude faster than those of siliciclastic minerals. The reactions between resident and injected components can create complex flow regime modifications, and potentially undermine the reservoir integrity by changing their mineralogic and textural compositions on engineering time scale. This process can be further enhanced due to differences in pH and temperature of the injectant from the resident sediments and fluids. CIRF.B is a multi-process simulator originally developed for basin simulations. Implemented processes include kinetic and thermodynamic reactions between minerals and fluid, fluid flow, mass-transfer, composite-media approach to sediment textural description and dynamics, elasto-visco-plastic rheology, and fracturing dynamics. To test the feasibility of applying CIRF.B to CO2 sequestration, a number of engineering scale simulations are carried out to delineate the effects of changing injectant chemistry and injection rates on both carbonate and siliciclastic sediments. Initial findings indicate that even moderate amounts of CO2 introduced into sediments can create low pH environments, which affects feldspar-clay interactions. While the amount of feldspars reacting in engineering time scale may be small, its consequence to clay alteration and permeability modfication can be significant. Results also demonstrate that diffusion-imported H+ can affect sealing properties of both siliciclastic and carbonate formations. In carbonate systems significant mass transfer can occur due to dissolution and reprecipitation. The resulting shifts in in-situ stresses can be sufficient to initiate fracturing. These simulations allow characterization of injectant fluids, thus assisting in the implementation of effective sequestration procedures.

Genome Partitioner: A web tool for multi-level partitioning of large-scale DNA constructs for synthetic biology applications.

PubMed

Christen, Matthias; Del Medico, Luca; Christen, Heinz; Christen, Beat

2017-01-01

Recent advances in lower-cost DNA synthesis techniques have enabled new innovations in the field of synthetic biology. Still, efficient design and higher-order assembly of genome-scale DNA constructs remains a labor-intensive process. Given the complexity, computer assisted design tools that fragment large DNA sequences into fabricable DNA blocks are needed to pave the way towards streamlined assembly of biological systems. Here, we present the Genome Partitioner software implemented as a web-based interface that permits multi-level partitioning of genome-scale DNA designs. Without the need for specialized computing skills, biologists can submit their DNA designs to a fully automated pipeline that generates the optimal retrosynthetic route for higher-order DNA assembly. To test the algorithm, we partitioned a 783 kb Caulobacter crescentus genome design. We validated the partitioning strategy by assembling a 20 kb test segment encompassing a difficult to synthesize DNA sequence. Successful assembly from 1 kb subblocks into the 20 kb segment highlights the effectiveness of the Genome Partitioner for reducing synthesis costs and timelines for higher-order DNA assembly. The Genome Partitioner is broadly applicable to translate DNA designs into ready to order sequences that can be assembled with standardized protocols, thus offering new opportunities to harness the diversity of microbial genomes for synthetic biology applications. The Genome Partitioner web tool can be accessed at https://christenlab.ethz.ch/GenomePartitioner.

Nested heat tracer experiments for identifying heterogeneity of aquifer-river exchange at multiple scales

NASA Astrophysics Data System (ADS)

Krause, Stefan; Hannah, David; Blume, Theresa; Angermann, Lisa; Lewandowski, Joerg; Cassidy, Nigel

2016-04-01

This study presents the nested application of three heat tracing methods for identifying aquifer-river exchange fluxes at multiple scales ranging from centimeter to stream reach-scale. The investigations focus on a UK lowland river where hotspots of redox-reactivity were found to coincide with locations of increased streambed residence times underneath flow confining streambed peat and clay structures. In order to identify the spatial extend and patterns of reactivity hot spots associated with these streambed structures, reach-scale patterns of aquifer-river exchange fluxes have been analysed by Fibre-Optic Distributed Temperature Sensing (FO-DTS) along a cable buried in the streambed of a 250 m reach in combination with 2D thermocouple arrays in a 12 m long pool-riffle-pool sequence and small-scale heat pulse injections for tracing shallow hyporheic flow paths within the uppermost 20cm streambed sediments. FO-DTS observed streambed temperature anomalies caused by the mixing of different temperatures of GW and SW end-members were used to infer information on exchange fluxes at the aquifer-river interface. FO-DTS survey results indicate that patterns of up to 2C colder (Summer) and 3.5C warmer (Winter) temperatures in investigated streambed sediments can be attributed to fast GW up-welling in sandy and gravely sediments. Contrasting conditions were found at locations where streambed temperatures equal SW temperatures and GW-SW exchange was inhibited by the existence of peat or clay lenses within the streambed. FO-DTS observations of regional GW up-welling patterns were complemented by heat pulse injection experiments which provided essential information of the shallow aquifer- river exchange fluxes and confirmed increased SW infiltration and lateral flow in riffle crests and at locations with highly conductive streambed sediments above flow confining low conductivity structures. The propagation of diurnal temperature oscillations from the surface to streambed depths of up to 40cm was observed at thermocouple profiles along a pool-riffle-pool sequence in order to analyse the potential masking of FO-DTS observed temperature patterns by topography induced hyporheic exchange fluxes. The cross-correlation functions based analysis of the depth dampening and offset of diurnal temperature amplitudes revealed that streambed temperature variation due to topography induced hyporheic exchange flow was an order of magnitude lower than the FO-DTS signal strength. The investigations supported the development of a conceptual model of aquifer-river exchange and hyporheic reactivity in lowland rivers including temperature traceable hyporheic exchange fluxes at multiple scales.

Scale-free brain quartet: artistic filtering of multi-channel brainwave music.

PubMed

Wu, Dan; Li, Chaoyi; Yao, Dezhong

2013-01-01

To listen to the brain activities as a piece of music, we proposed the scale-free brainwave music (SFBM) technology, which translated scalp EEGs into music notes according to the power law of both EEG and music. In the present study, the methodology was extended for deriving a quartet from multi-channel EEGs with artistic beat and tonality filtering. EEG data from multiple electrodes were first translated into MIDI sequences by SFBM, respectively. Then, these sequences were processed by a beat filter which adjusted the duration of notes in terms of the characteristic frequency. And the sequences were further filtered from atonal to tonal according to a key defined by the analysis of the original music pieces. Resting EEGs with eyes closed and open of 40 subjects were utilized for music generation. The results revealed that the scale-free exponents of the music before and after filtering were different: the filtered music showed larger variety between the eyes-closed (EC) and eyes-open (EO) conditions, and the pitch scale exponents of the filtered music were closer to 1 and thus it was more approximate to the classical music. Furthermore, the tempo of the filtered music with eyes closed was significantly slower than that with eyes open. With the original materials obtained from multi-channel EEGs, and a little creative filtering following the composition process of a potential artist, the resulted brainwave quartet opened a new window to look into the brain in an audible musical way. In fact, as the artistic beat and tonal filters were derived from the brainwaves, the filtered music maintained the essential properties of the brain activities in a more musical style. It might harmonically distinguish the different states of the brain activities, and therefore it provided a method to analyze EEGs from a relaxed audio perspective.

Scale-Free Brain Quartet: Artistic Filtering of Multi-Channel Brainwave Music

PubMed Central

Wu, Dan; Li, Chaoyi; Yao, Dezhong

2013-01-01

To listen to the brain activities as a piece of music, we proposed the scale-free brainwave music (SFBM) technology, which translated scalp EEGs into music notes according to the power law of both EEG and music. In the present study, the methodology was extended for deriving a quartet from multi-channel EEGs with artistic beat and tonality filtering. EEG data from multiple electrodes were first translated into MIDI sequences by SFBM, respectively. Then, these sequences were processed by a beat filter which adjusted the duration of notes in terms of the characteristic frequency. And the sequences were further filtered from atonal to tonal according to a key defined by the analysis of the original music pieces. Resting EEGs with eyes closed and open of 40 subjects were utilized for music generation. The results revealed that the scale-free exponents of the music before and after filtering were different: the filtered music showed larger variety between the eyes-closed (EC) and eyes-open (EO) conditions, and the pitch scale exponents of the filtered music were closer to 1 and thus it was more approximate to the classical music. Furthermore, the tempo of the filtered music with eyes closed was significantly slower than that with eyes open. With the original materials obtained from multi-channel EEGs, and a little creative filtering following the composition process of a potential artist, the resulted brainwave quartet opened a new window to look into the brain in an audible musical way. In fact, as the artistic beat and tonal filters were derived from the brainwaves, the filtered music maintained the essential properties of the brain activities in a more musical style. It might harmonically distinguish the different states of the brain activities, and therefore it provided a method to analyze EEGs from a relaxed audio perspective. PMID:23717527

Geo-material surface modification of microchips using layer-by-layer (LbL) assembly for subsurface energy and environmental applications.

PubMed

Zhang, Y Q; Sanati-Nezhad, A; Hejazi, S H

2018-01-16

A key constraint in the application of microfluidic technology to subsurface flow and transport processes is the surface discrepancy between microchips and the actual rocks/soils. This research employs a novel layer-by-layer (LbL) assembly technology to produce rock-forming mineral coatings on microchip surfaces. The outcome of the work is a series of 'surface-mimetic micro-reservoirs (SMMR)' that represent multi-scales and multi-types of natural rocks/soils. For demonstration, the clay pores of sandstones and mudrocks are reconstructed by representatively coating montmorillonite and kaolinite in polydimethylsiloxane (PDMS) microchips in a wide range of channel sizes (width of 10-250 μm, depth of 40-100 μm) and on glass substrates. The morphological and structural properties of mineral coatings are characterized using a scanning electron microscope (SEM), optical microscope and profilometer. The coating stability is tested by dynamic flooding experiments. The surface wettability is characterized by measuring mineral oil-water contact angles. The results demonstrate the formation of nano- to micro-scale, fully-covered and stable mineral surfaces with varying wetting properties. There is an opportunity to use this work in the development of microfluidic technology-based applications for subsurface energy and environmental research.

A minimalistic microbial food web in an excavated deep subsurface clay rock.

PubMed

Bagnoud, Alexandre; de Bruijn, Ino; Andersson, Anders F; Diomidis, Nikitas; Leupin, Olivier X; Schwyn, Bernhard; Bernier-Latmani, Rizlan

2016-01-01

Clay rocks are being considered for radioactive waste disposal, but relatively little is known about the impact of microbes on the long-term safety of geological repositories. Thus, a more complete understanding of microbial community structure and function in these environments would provide further detail for the evaluation of the safety of geological disposal of radioactive waste in clay rocks. It would also provide a unique glimpse into a poorly studied deep subsurface microbial ecosystem. Previous studies concluded that microorganisms were present in pristine Opalinus Clay, but inactive. In this work, we describe the microbial community and assess the metabolic activities taking place within borehole water. Metagenomic sequencing and genome-binning of a porewater sample containing suspended clay particles revealed a remarkably simple heterotrophic microbial community, fueled by sedimentary organic carbon, mainly composed of two organisms: a Pseudomonas sp. fermenting bacterium growing on organic macromolecules and releasing organic acids and H2, and a sulfate-reducing Peptococcaceae able to oxidize organic molecules to CO(2). In Opalinus Clay, this microbial system likely thrives where pore space allows it. In a repository, this may occur where the clay rock has been locally damaged by excavation or in engineered backfills. © FEMS 2015. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

In Situ Study of CO2 and H2O Partitioning Between Na-Montmorillonite and Variably Wet Supercritical Carbon Dioxide

DOE Office of Scientific and Technical Information (OSTI.GOV)

Loring, John S.; Ilton, Eugene S.; Chen, Jeffrey

Shale formations play fundamental roles in large-scale geologic carbon sequestration (GCS) aimed primarily to mitigate climate change, and in smaller-scale GCS targeted mainly for CO2-enhanced gas recovery operations. In both technologies, CO2 is injected underground as a supercritical fluid (scCO2), where interactions with shale minerals could influence successful GCS implementation. Reactive components of shales include expandable clays, such as montmorillonites and mixed-layer illite/smectite clays. In this work, we used in situ X-ray diffraction (XRD) and in situ infrared (IR) spectroscopy to investigate the swelling/shrinkage and water/CO2 sorption of a pure montmorillonite, Na-SWy-2, when the clay is exposed to variably hydratedmore » scCO2 at 50 °C and 90 bar. Measured interlayer spacings and sorbed water concentrations at varying levels of scCO2 hydration are similar to previously reported values measured in air at ambient pressure over a range of relative humidities. IR spectra show evidence of both water and CO2 intercalation, and variations in peak shapes and positions suggest multiple sorbed types with distinct chemical environments. Based on the intensity of the asymmetric CO stretching band of the CO2 associated with the Na-SWy-2, we observed a significant increase in sorbed CO2 as the clay expands from a 0W to a 1W state, suggesting that water props open the interlayer so that CO2 can enter. However, as the clay transitions from a 1W to a 2W state, CO2 desorbs sharply. These observations were placed in the context of two conceptual models concerning hydration mechanisms for expandable clays and were also discussed in light of recent theoretical studies on CO2-H2O-clay interactions. The swelling/shrinkage of expandable clays could affect solid volume, porosity, and permeability of shales. Consequently, the results from this work could aid predictions of shale caprock integrity in large-scale GCS, as well as methane transmissivity in enhanced gas recovery operations.« less

Prokaryote community dynamics in anaerobic co-digestion of swine manure, rice straw and industrial clay residuals.

PubMed

Jiménez, Janet; Theuerl, Susanne; Bergmann, Ingo; Klocke, Michael; Guerra, Gilda; Romero-Romero, Osvaldo

The aim of this study was to analyze the effect of the addition of rice straw and clay residuals on the prokaryote methane-producing community structure in a semi-continuously stirred tank reactor fed with swine manure. Molecular techniques, including terminal restriction fragment length polymorphism and a comparative nucleotide sequence analyses of the prokaryotic 16S rRNA genes, were performed. The results showed a positive effect of clay addition on methane yield during the co-digestion of swine manure and rice straw. At the digestion of swine manure, the bacterial phylum Firmicutes and the archaeal family Methanosarcinaceae, particularly Methanosarcina species, were predominant. During the co-digestion of swine manure and rice straw the microbial community changed, and with the addition of clay residual, the phylum Bacteroidetes predominated. The new nutritional conditions resulted in a shift in the archaeal family Methanosarcinaceae community as acetoclastic Methanosaeta species became dominant.

Augmenting granular activated carbon with natural clay for multicomponent sorption of heavy metals from aqueous solutions.

PubMed

Mu'azu, Nuhu Dalhat; Essa, Mohammed Hussain; Lukman, Salihu

2017-10-01

Multicomponent adsorption of Cd, Cr, Cu, Pb and Zn onto date palm pits based granular activated carbon (GAC) augmented with highly active natural clay at different proportion was investigated. The effects of the initial pH and the adsorbents mixed ratio on the removal selectivity sequence of the metals evaluated. Batch adsorption experiments were undertaken at initial pH 2, 6 and 12. At initial pH 2, both the percent removal and the metals adsorptive capacity decreased with increasing GAC to clay ratio (from 0 to 1) with the percentage removal of Cd, Zn and Cr ions dropping from 68, 81, 100% to 43, 57 and 70%, respectively. At both pH 6 and 12, the percentage removals and adsorption capacities of all the heavy metal ions are higher than at pH 2. Selectivity sequences for pH 2, 6 and 12 followed the order Pb > Cr > Cu > Zn > Cd; Pb > Cr > Cu > Cd > Zn and Cd > Cr > Cu > Pb > Zn, respectively. The adsorption trends were analyzed in relation to point of zero charge and ξ-potential and the metals ions speciation at different pH. These results will help better understand the feasibility of augmenting GAC with natural clay minerals during fixed bed column test which is more beneficial for practical industrial applications.

A remediation performance model for enhanced metabolic reductive dechlorination of chloroethenes in fractured clay till

NASA Astrophysics Data System (ADS)

Manoli, Gabriele; Chambon, Julie C.; Bjerg, Poul L.; Scheutz, Charlotte; Binning, Philip J.; Broholm, Mette M.

2012-04-01

A numerical model of metabolic reductive dechlorination is used to describe the performance of enhanced bioremediation in fractured clay till. The model is developed to simulate field observations of a full scale bioremediation scheme in a fractured clay till and thereby to assess remediation efficiency and timeframe. A relatively simple approach is used to link the fermentation of the electron donor soybean oil to the sequential dechlorination of trichloroethene (TCE) while considering redox conditions and the heterogeneous clay till system (clay till matrix, fractures and sand stringers). The model is tested on lab batch experiments and applied to describe sediment core samples from a TCE-contaminated site. Model simulations compare favorably to field observations and demonstrate that dechlorination may be limited to narrow bioactive zones in the clay matrix around fractures and sand stringers. Field scale simulations show that the injected donor is expected to be depleted after 5 years, and that without donor re-injection contaminant rebound will occur in the high permeability zones and the mass removal will stall at 18%. Long remediation timeframes, if dechlorination is limited to narrow bioactive zones, and the need for additional donor injections to maintain dechlorination activity may limit the efficiency of ERD in low-permeability media. Future work should address the dynamics of the bioactive zones, which is essential to understand for predictions of long term mass removal.

Multi-method, multi-scale geophysical observations in the Obsidian Pool Thermal Area, Yellowstone National Park

NASA Astrophysics Data System (ADS)

Holbrook, W. S.; Carr, B.; Pasquet, S.; Sims, K. W. W.; Dickey, K.

2016-12-01

Despite the prominence of Yellowstone as the world's most active hydrothermal province, relatively little is known about the plumbing systems that link deeper hydrothermal fluids to the charismatic hot springs, geysers and mud pots at the surface. We present the results of a multi-method, multi-scale geophysical investigation of the Obsidian Pool Thermal Area (OPTA) in Yellowstone National Park. OPTA hosts acid-sulfate hot springs and mud pots with relatively low pH. We present the results of seismic refraction, electrical resistivity, time-domain EM (TEM), soil conductivity meter (EMI), and GPR data acquired in July 2016. There is a strong contrast in physical properties in the upper 50 m of the subsurface between the low-lying hydrothermal area and surrounding hills: the hydrothermal area has much lower seismic velocities ( 1 km/s vs 3 km/s) and electrical resistivity ( 20 ohm-m vs 300 ohm-m). A prominent zone of very low resistivity (<10 ohm-m) exists at about 20 m depth beneath all hydrothermal features. Poisson's ratio, calculated from P-wave refraction tomography and surface wave inversions, shows low values beneath the "frying pan," where gas is emerging in small fumaroles, suggesting that Poisson's ratio is an effective "gas detector" in hydrothermal areas. Near-surface resistivity mapped from EMI shows a strong correlation with hydrothermal areas previously mapped by heat flow, with areas of high heat flow generally having low resistivity near the surface. Two exceptions are (1) the "frying pan," which shows a central area of high resistivity (corresponding to escaping gas) surrounding by a halo of low resistivity, and (2) a broad area of low resistivity connecting the hydrothermal centers to the lake, which may be clay deposits. TEM data penetrate up to 200 m in depth and suggest that a reservoir of hydrothermal fluids may underlie the entire area, including beneath the forested hills, at depths greater than 100 m, but that they rise toward the surface in a 100-m-wide area just west of the frying pan. Our results show that synoptic, multi-scale geophysical measurements can place important constraints on the subsurface pathways of hydrothermal waters and gas.

40Ar/39Ar dating of a Langhian biotite-rich clay layer in the pelagic sequence of the Cònero Riviera, Ancona, Italy

NASA Astrophysics Data System (ADS)

Mader, Dieter; Montanari, Alessandro; Gattacceca, Jérôme; Koeberl, Christian; Handler, Robert; Coccioni, Rodolfo

2001-12-01

A nearly complete and undisturbed Miocene carbonate sequence is present in the easternmost part of the Umbria-Marche basin, Italy, which is ideal for detailed and integrated stratigraphic investigations of the Miocene Epoch. In this study, we were trying to obtain evidence for the presence or absence of distal ejecta from the 15 Ma Ries impact structure in southern Germany, located about 600 km to the north-northwest of the Umbria-Marche basin. The first step is to find coeval strata in the Umbria-Marche sequence. At the La Vedova section, Cònero Riviera, we dated a volcaniclastic biotite-rich clay layer, the Aldo Level, which is situated within planktonic foraminiferal Zone N8, at 14.9±0.2 Ma, using the 40Ar/39Ar method. Together with detailed geologic and stratigraphic information about the Aldo Level, the resulting age can be used confidentially to calibrate the Langhian stage. Besides providing new constraints on Miocene geochronology, this age can now be used for impact stratigraphic studies. To directly correlate the biotite ages of the La Vedova section with rocks from the Ries impact event, Ries impact glass was also analyzed and found to be coeval. Although unrelated to this impact event, the biotite-rich clay layer should help in the search for evidence of distal ejecta related to the Ries crater.

Mineralogical control of soil organic carbon persistence at the multidecadal time scale

NASA Astrophysics Data System (ADS)

Lutfalla, Suzanne; Barré, Pierre; Bernard, Sylvain; Le Guillou, Corentin; Chenu, Claire

2015-04-01

One of the current challenges in understanding the long term persistence of organic carbon in soils is to assess how mineral surfaces, especially at small scale, can stabilize soil organic carbon (SOC). The question we address in this work is whether different mineral species stabilize different types of SOC. Here we used the unique opportunity offered by long term bare fallows to study in situ C dynamics in several fine fractions of a silty loam soil. Indeed, with no vegetation i.e. no external input of fresh C, the plant-free soil of the Versailles 42 Plots (INRA, France) has been progressively enriched in persistent SOC during the 80 years of bare fallow. To separate mineral phases of the clay size fraction we performed a size fractionation on samples taken from 4 different plots at 5 different dates (0, 10, 22, 52, and 79 years after the beginning of the BF) and analyzed the SOC in the different fractions thus obtained. First, the clay fraction (< 2 µm) was isolated by wet sieving and centrifugation in water. Then, the clay fraction was further separated into 3 size fractions by centrifugation: fine clay (< 0.05 µm), intermediate clay (0.05 - 0.2 µm), and coarse clay (0.2 - 2 µm). X-ray diffraction was used to determine the mineralogy of the phases and we found that the coarse clay fraction on the one hand and fine and intermediate clay fractions on the other hand exhibited contrasted mineralogies. Fine and intermediate clay fractions contained almost exclusively smectite and mixed-layered illite/smectite minerals whereas coarse clays contained also discrete illite and kaolinite on top of smectite and illite/smectite. We carried out CHN elemental analysis to study the C and nitrogen dynamics with time in the different fractions. And synchrotron based spectroscopy and microscopy (NEXAFS bulk and STXM at the carbon K edge of 280 eV, CLS Saskatoon, Canada) was used to get information on the distribution and the chemical speciation of the SOC in fractions with contrasted mineralogies. Data analysis is still ongoing and full results will be presented at EGU. First results show that the dynamics and quality of the SOC differ in the different clay fractions. SOC decay was greater in coarse clays compared to intermediate clays, SOC in the coarse clay fraction displaying more diversity than in the other fractions. SOC persistence at the multidecadal timescale also seems to be mineral dependent: smectite being more efficient at protecting carbon compared to illite.

Slope Stability of Geosynthetic Clay Liner Test Plots

EPA Science Inventory

Fourteen full-scale field test plots containing five types of geosynthetic clay liners (GCLs) were constructed on 2H:IV and 3H:IV slopes for the purpose of assessing slope stability. The test plots were designed to simulate typical final cover systems for landfill. Slides occurr...

ZVI-CLAY SOIL MIXING TREATS DNAPL SOURCE AREA AT 35-FOOT DEPTH

EPA Science Inventory

The DuPont Company and Colorado State University (CSU) are collaborating in development and refinement of a technology that involves in-situ admixing of contaminated soil, granular zero valent iron (ZVI), and clay using conventional soil mixing equipment. A full-scale application...

[Analysis of XRD spectral characteristics of soil clay mineral in two typical cultivated soils].

PubMed

Zhang, Zhi-Dan; Luo, Xiang-Li; Jiang, Hai-Chao; Li, Qiao; Shen, Cong-Ying; Liu, Hang; Zhou, Ya-Juan; Zhao, Lan-Po; Wang, Ji-Hong

2014-07-01

The present paper took black soil and chernozem, the typical cultivated soil in major grain producing area of Northeast, as the study object, and determinated the soil particle composition characteristics of two cultivated soils under the same climate and location. Then XRD was used to study the composition and difference of clay mineral in two kinds of soil and the evolutionary mechanism was explored. The results showed that the two kinds of soil particles were composed mainly of the sand, followed by clay and silt. When the particle accumulation rate reached 50%, the central particle size was in the 15-130 microm interval. Except for black soil profile of Shengli Xiang, the content of clay showed converse sequence to the central particle in two soils. Clay accumulated under upper layer (18.82%) in black soil profile while under caliche layer (17.41%) in chernozem profile. Clay content was the least in parent material horizon except in black profile of Quanyanling. Analysis of clay XRD atlas showed that the difference lied in not only the strength of diffraction peak, but also in the mineral composition. The main contents of black soil and chernozem were both 2 : 1 clay, the composition of black soil was smectite/illite mixed layer-illite-vermiculite and that of chernozem was S/I mixture-illite-montmorillonite, and both of them contained little kaolinite, chlorite, quartz and other primary mineral. This paper used XRD to determine the characteristics of clay minerals comprehensively, and analyzed two kinds of typical cultivated soil comparatively, and it was a new perspective of soil minerals study.

Variations in Grain-Scale Sediment Structure in a Gravel-Bed Channel as a Function of Fine Sediment Content and Morphological Location

NASA Astrophysics Data System (ADS)

Voepel, H.; Ahmed, S. I.; Hodge, R. A.; Leyland, J.; Sear, D. A.

2016-12-01

One of the major causes of uncertainty in estimates of bedload transport rates in gravel bed rivers is a lack of understanding of grain-scale sediment structure, and the impact that this structure has on bed stability. Furthermore, grain-scale structure varies throughout a channel and over time in ways that have not been fully quantified. Our research aims to quantify variations in sediment structure caused by two key variables; morphological location within a riffle-pool sequence (reflecting variation in hydraulic conditions), and the fine sediment content of the gravel bed (sand and clay). We report results from a series of flume experiments in which we water-worked a gravel bed with a riffle-pool morphology. The fine sediment content of the bed was incrementally increased over a series of runs from gravel only, to coarse sand, fine sand and two concentrations of clay. After each experimental run intact samples of the bed at different locations were extracted and the internal structure of the bed was measured using non-destructive, micro-focus X-ray computed tomography (CT) imaging. The CT images were processed to measure the properties of individual grains, including volume, center of mass, dimension, and contact points. From these data we were able to quantify the sediment structure through metrics including measurement of grain pivot angles, grain exposure and protrusion, and vertical variation in bed porosity and fine sediment content. Metrics derived from the CT data were verified using data from grain counts and tilt-table measurements on co-located samples. Comparison of the metrics across different morphological locations and fine sediment content demonstrates how these factors affect the bed structure. These results have implications for the development of sediment entrainment models for gravel bed rivers.

Dynamics of confined reactive water in smectite clay-zeolite composites.

PubMed

Pitman, Michael C; van Duin, Adri C T

2012-02-15

The dynamics of water confined to mesoporous regions in minerals such as swelling clays and zeolites is fundamental to a wide range of resource management issues impacting many processes on a global scale, including radioactive waste containment, desalination, and enhanced oil recovery. Large-scale atomic models of freely diffusing multilayer smectite particles at low hydration confined in a silicalite cage are used to investigate water dynamics in the composite environment with the ReaxFF reactive force field over a temperature range of 300-647 K. The reactive capability of the force field enabled a range of relevant surface chemistry to emerge, including acid/base equilibria in the interlayer calcium hydrates and silanol formation on the edges of the clay and inner surface of the zeolite housing. After annealing, the resulting clay models exhibit both mono- and bilayer hydration structures. Clay surface hydration redistributed markedly and yielded to silicalite water loading. We find that the absolute rates and temperature dependence of water dynamics compare well to neutron scattering data and pulse field gradient measures from relevant samples of Ca-montmorillonite and silicalite, respectively. Within an atomistic, reactive context, our results distinguish water dynamics in the interlayer Ca(OH)(2)·nH(2)O environment from water flowing over the clay surface, and from water diffusing within silicalite. We find that the diffusion of water when complexed to Ca hydrates is considerably slower than freely diffusing water over the clay surface, and the reduced mobility is well described by a difference in the Arrhenius pre-exponential factor rather than a change in activation energy.

Unified scaling behavior of physical properties of clays in alcohol solutions.

PubMed

Pujala, Ravi Kumar; Pawar, Nisha; Bohidar, H B

2011-12-15

This paper reports observation of universal scaling of physical properties of clay particles, Laponite (aspect ratio=30) (L) and Na Montmorillonite (MMT, aspect ratio=200), in aqueous alcohol solutions (methanol, ethanol and 1-propanol) with solvent polarity, defined through reaction field factor f(OH)(ɛ(0),n)=[(ɛ(0) - 1/ɛ(0) + 2) - (n(2) - 1/n(2) + 2)], at room temperature (20°C). Here, ɛ(0) and n are the static dielectric constant and refractive index of the solvent concerned. Physical properties (Z) such as zeta potential, effective aggregate size, viscosity and surface tension scaled with the relative solvent polarity as Z∼δf(α); δf=(f(w)(ɛ(0),n) - f(OH)(ɛ(0),n)), where f(w)(ɛ(0),n) is the reaction field factor for water, Z is the normalized physical property, and α is its characteristic scaling exponent. The value of this exponent was found to be invariant of aspect ratio of the clay but dependent on the solvent polarity only. Copyright © 2011 Elsevier Inc. All rights reserved.

Microstructures and deformation mechanisms in Opalinus Clay: insights from scaly clay from the Main Fault in the Mont Terri Rock Laboratory (CH)

NASA Astrophysics Data System (ADS)

Laurich, Ben; Urai, Janos L.; Nussbaum, Christophe

2017-01-01

The Main Fault in the shaly facies of Opalinus Clay is a small reverse fault formed in slightly overconsolidated claystone at around 1 km depth. The fault zone is up to 6 m wide, with micron-thick shear zones, calcite and celestite veins, scaly clay and clay gouge. Scaly clay occurs in up to 1.5 m wide lenses, providing hand specimens for this study. We mapped the scaly clay fabric at 1 m-10 nm scale, examining scaly clay for the first time using broad-ion beam polishing combined with scanning electron microscopy (BIB-SEM). Results show a network of thin shear zones and microveins, separating angular to lensoid microlithons between 10 cm and 10 µm in diameter, with slickensided surfaces. Our results show that microlithons are only weakly deformed and that strain is accumulated by fragmentation of microlithons by newly formed shear zones, by shearing in the micron-thick zones and by rearrangement of the microlithons.The scaly clay aggregates can be easily disintegrated into individual microlithons because of the very low tensile strength of the thin shear zones. Analyses of the microlithon size by sieving indicate a power-law distribution model with exponents just above 2. From this, we estimate that only 1 vol % of the scaly clay aggregate is in the shear zones.After a literature review of the hypotheses for scaly clay generation, we present a new model to explain the progressive formation of a self-similar network of anastomosing thin shear zones in a fault relay. The relay provides the necessary boundary conditions for macroscopically continuous deformation. Localization of strain in thin shear zones which are locally dilatant, and precipitation of calcite veins in dilatant shear fractures, evolve into complex microscale re-partitioning of shear, forming new shear zones while the microlithons remain much less deformed internally and the volume proportion of the µm-thick shear zones slowly increases. Grain-scale deformation mechanisms are microfracturing, boudinage and rotation of mica grains, pressure solution of carbonate fossils and pore collapse during ductile flow of the clay matrix. This study provides a microphysical basis to relate microstructures to macroscopic observations of strength and permeability of the Main Fault, and extrapolating fault properties in long-term deformation.

Adsorption of DDT and PCB by Nanomaterials from Residual Soil.

PubMed

Taha, Mohd Raihan; Mobasser, Shariat

2015-01-01

This paper presents the findings of a study on adsorption of dichlorodiphenythreechloroethen (DDT) and polychlorinated biphenyls (PCBs) on three nanomaterials including Multi walled Carbon Nanotube (MWNT), nano-clay and nano-alumina. DDT and PCBs are of significant concern due their high toxicity and long environmental half-lives. Experiments were conducted using batch adsorption procedures at different DDT and PCBs concentrations, from 10 to 60 mg/L. The amounts of MWNT, nano-clay and Nano-alumina used were 0.25%, 0.50%, 0.75%, 1%, 2% and 10%. The adsorption of PCBs solution onto the MWNT, nano-clay and nano-alumina was characterized by an initial rapid adsorption which eventually became constant within 22, 20, and 17 hours, respectively. The adsorption of DDT solution onto the MWNT, nano-clay and nano-alumina was also characterized by an initial rapid adsorption which gradually became constant within 22, 22 and 16 hours, respectively. Results of this study indicated that MWNT was a better adsorbent material compared to nano-clay and nano-alumina for both contaminants in this study. While at 10% of MWNT 88.9% and 77% of DDT and PCB were removed by MWNT, respectively. The effect of pH and temperature were also investigated.

Adsorption of DDT and PCB by Nanomaterials from Residual Soil

PubMed Central

Taha, Mohd Raihan; Mobasser, Shariat

2015-01-01

This paper presents the findings of a study on adsorption of dichlorodiphenythreechloroethen (DDT) and polychlorinated biphenyls (PCBs) on three nanomaterials including Multi walled Carbon Nanotube (MWNT), nano-clay and nano-alumina. DDT and PCBs are of significant concern due their high toxicity and long environmental half-lives. Experiments were conducted using batch adsorption procedures at different DDT and PCBs concentrations, from 10 to 60 mg/L. The amounts of MWNT, nano-clay and Nano-alumina used were 0.25%, 0.50%, 0.75%, 1%, 2% and 10%. The adsorption of PCBs solution onto the MWNT, nano-clay and nano-alumina was characterized by an initial rapid adsorption which eventually became constant within 22, 20, and 17 hours, respectively. The adsorption of DDT solution onto the MWNT, nano-clay and nano-alumina was also characterized by an initial rapid adsorption which gradually became constant within 22, 22 and 16 hours, respectively. Results of this study indicated that MWNT was a better adsorbent material compared to nano-clay and nano-alumina for both contaminants in this study. While at 10% of MWNT 88.9% and 77% of DDT and PCB were removed by MWNT, respectively. The effect of pH and temperature were also investigated. PMID:26659225

February 2011 sensitive clay landslides in eastern Turkey

NASA Astrophysics Data System (ADS)

Akçar, N.; Yavuz, V.; Ivy-Ochs, S.; Fredin, O.; Schlunegger, F.

2016-12-01

The Çöllolar open pit mine is situated in the northwestern sector of the Elbistan basin, which is an intramontane basin located at a mean elevation of about 1200 m in the eastern Turkey. The basement rock in the basin is karstic limestone, which is overlain by a thick layer of clay (>100 m), followed by 20-50 m thick lignite series that is overlain by the 20-50 m thick gyttja sequence. These deposits are overlain by Quaternary deposits, comprising the top surfaces of the terraces of the Hurman River, which drains the surface and ground water from the surrounding hills to the northeast towards the center of the Elbistan basin. The lignite series in the basin has been excavated since early 1970's. In February 2011, two landslides in which 10 workers were killed, occurred in the Çöllolar mine. Of the two landslides, the 2nd and largest which covers an area of ca. 2.3 km2, was caused by the collapse of the northeastern wall of the open-pit mine. The failure was made of successive rearward collapses with the debris flowing into the open-pit. In this study, we focus on the sensitivity of the clays within the Quaternary deposits that seems led to instability and the trigger of the landslides based on the flow style of the movement and nature of the failure. To reveal these factors, we employed six boreholes and collected 64 undisturbed, 41 disturbed and 10 surface samples for the sedimentological and geotechnical analysis. Our results from this study show that Quaternary deposits are heterogeneous and have variable clay content. Mineralogically, most of these clays belong to the smectite group with high swelling potential. They are high plastic clays with high consolidation ratio. They have high shear and remolded shear strengths, thus low to medium sensitivity. Their sensitivity increases dramatically with increasing water content. During our analysis, we encountered a soft clay layer, which showed an over consolidation ratio of 10 and a strain softening response. This response is typical for quick clays. This indicates that the landslide was caused by the liquefaction of this layer within the thick sequence of this part of the Elbistan basin. In brief, we conclude that massive failures at the Çöllolar coalfield are unique examples of sensitive clay landslides occurred in a subtropical arid region beyond the extent of Quaternary glaciations.

Vapor Intrusion from Entrapped NAPL Sources and Groundwater Plumes: Process Understanding and Improved Modeling Tools for Pathway Assessment

DTIC Science & Technology

2014-07-01

into a building ....149 Figure 5.52: Effect of infiltration at 1 mm/hr for 24 hours on vapor signals in sandy clay loam scenario...shown above, there will also likely be large diameter sanitary sewers running the length of each street. Each house on the street will have a sewer...permeability, a discontinuous clay layer system, and a system with scattered obstacles (e.g. utilities). The layered systems indicated that the sequence of

Millennial-scale variability in south-east Australian hydroclimate between 30,000 and 10,000 years ago

NASA Astrophysics Data System (ADS)

Falster, Georgina; Tyler, Jonathan; Grant, Katharine; Tibby, John; Turney, Chris; Löhr, Stefan; Jacobsen, Geraldine; Kershaw, A. Peter

2018-07-01

Global climate variability during the late Quaternary is commonly investigated within the framework of the 'bipolar seesaw' pattern of asynchronous temperature variations in the northern and southern polar latitudes. The terrestrial hydrological response to this pattern in south-eastern Australia is not fully understood, as continuous, high-resolution, well-dated proxy records for the hydrological cycle in the region are sparse. Here we present a well-dated, highly resolved record of moisture balance spanning 30000-10000 calendar years before present (30-10 ka BP), based on x-ray fluorescence and organic carbon isotope (δ13COM) measurements of a sedimentary sequence from Lake Surprise in south-eastern Australia. The data provide a locally coherent record of the hydrological cycle. Elevated Si (reflecting windblown quartz and clays), and relatively high δ13COM, indicate an extended period of relative aridity between 28 and 18.5 ka BP, interrupted by millennial-scale episodes of decreased Si and δ13COM, suggesting increased moisture balance. This was followed by a rapid deglacial shift to low Si and δ13COM at 18.5 ka BP, indicative of wetter conditions. We find that these changes are coeval with other records from south-eastern Australia and New Zealand, and use a Monte Carlo Empirical Orthogonal Function approach to extract a common trend from three high-resolution records. Our analyses suggest that drivers of the regional hydrological cycle have varied on multi-millennial time scales, in response to major shifts in global atmosphere-ocean dynamics during the last glacial-interglacial transition. Southern Ocean processes were the dominant control on hydroclimate during glacial times, via a strong influence of cold sea surface temperatures on moisture uptake and delivery onshore. Following the last deglaciation (around 18 ka BP), the southward migration of cold Southern Ocean fronts likely resulted in the establishment of conditions more like those of the present day. Millennial-scale variability in records from the region is dominated by a persistent ca. 2300-year periodicity, consistent with other records across the Southern Hemisphere mid-latitudes; however, this pervasive periodicity is not obviously linked to the 'bipolar seesaw' and the mechanism remains equivocal.

Improved Yield of High Molecular Weight DNA Coincides with Increased Microbial Diversity Access from Iron Oxide Cemented Sub-Surface Clay Environments

PubMed Central

Hurt, Richard A.; Robeson, Michael S.; Shakya, Migun; Moberly, James G.; Vishnivetskaya, Tatiana A.; Gu, Baohua; Elias, Dwayne A.

2014-01-01

Despite over three decades of progress, extraction of high molecular weight (HMW) DNA from high clay soils or iron oxide cemented clay has remained challenging. HMW DNA is desirable for next generation sequencing as it yields the most comprehensive coverage. Several DNA extraction procedures were compared from samples that exhibit strong nucleic acid adsorption. pH manipulation or use of alternative ion solutions offered no improvement in nucleic acid recovery. Lysis by liquid N2 grinding in concentrated guanidine followed by concentrated sodium phosphate extraction supported HMW DNA recovery from clays high in iron oxides. DNA recovered using 1 M sodium phosphate buffer (PB) as a competitive desorptive wash was 15.22±2.33 µg DNA/g clay, with most DNA consisting of >20 Kb fragments, compared to 2.46±0.25 µg DNA/g clay with the Powerlyzer system (MoBio). Increasing PB concentration in the lysis reagent coincided with increasing DNA fragment length during initial extraction. Rarefaction plots of 16S rRNA (V1–V3 region) pyrosequencing from A-horizon and clay soils showed an ∼80% and ∼400% larger accessed diversity compared to the Powerlyzer soil DNA system, respectively. The observed diversity from the Firmicutes showed the strongest increase with >3-fold more operational taxonomic units (OTU) recovered. PMID:25033199

From seconds to months: an overview of multi-scale dynamics of mobile telephone calls

NASA Astrophysics Data System (ADS)

Saramäki, Jari; Moro, Esteban

2015-06-01

Big Data on electronic records of social interactions allow approaching human behaviour and sociality from a quantitative point of view with unforeseen statistical power. Mobile telephone Call Detail Records (CDRs), automatically collected by telecom operators for billing purposes, have proven especially fruitful for understanding one-to-one communication patterns as well as the dynamics of social networks that are reflected in such patterns. We present an overview of empirical results on the multi-scale dynamics of social dynamics and networks inferred from mobile telephone calls. We begin with the shortest timescales and fastest dynamics, such as burstiness of call sequences between individuals, and "zoom out" towards longer temporal and larger structural scales, from temporal motifs formed by correlated calls between multiple individuals to long-term dynamics of social groups. We conclude this overview with a future outlook.

Genome Partitioner: A web tool for multi-level partitioning of large-scale DNA constructs for synthetic biology applications

PubMed Central

Del Medico, Luca; Christen, Heinz; Christen, Beat

2017-01-01

Recent advances in lower-cost DNA synthesis techniques have enabled new innovations in the field of synthetic biology. Still, efficient design and higher-order assembly of genome-scale DNA constructs remains a labor-intensive process. Given the complexity, computer assisted design tools that fragment large DNA sequences into fabricable DNA blocks are needed to pave the way towards streamlined assembly of biological systems. Here, we present the Genome Partitioner software implemented as a web-based interface that permits multi-level partitioning of genome-scale DNA designs. Without the need for specialized computing skills, biologists can submit their DNA designs to a fully automated pipeline that generates the optimal retrosynthetic route for higher-order DNA assembly. To test the algorithm, we partitioned a 783 kb Caulobacter crescentus genome design. We validated the partitioning strategy by assembling a 20 kb test segment encompassing a difficult to synthesize DNA sequence. Successful assembly from 1 kb subblocks into the 20 kb segment highlights the effectiveness of the Genome Partitioner for reducing synthesis costs and timelines for higher-order DNA assembly. The Genome Partitioner is broadly applicable to translate DNA designs into ready to order sequences that can be assembled with standardized protocols, thus offering new opportunities to harness the diversity of microbial genomes for synthetic biology applications. The Genome Partitioner web tool can be accessed at https://christenlab.ethz.ch/GenomePartitioner. PMID:28531174

Conformation and Dynamics of a Flexible Sheet in Solvent Media by Monte Carlo Simulations

NASA Astrophysics Data System (ADS)

Pandey, Ras; Anderson, Kelly; Heinz, Hendrik; Farmer, Barry

2005-03-01

Flexibility of the clay sheet is limited even in the ex-foliated state in some solvent media. A coarse grained model is used to investigate dynamics and conformation of a flexible sheet to model such a clay platelet in an effective solvent medium on a cubic lattice of size L^3 with lattice constant a. The undeformed sheet is described by a square lattice of size Ls^2, where, each node of the sheet is represented by the unit cube of the cubic lattice and 2a is the minimum distance between the nearest neighbor nodes to incorporate the excluded volume constraints. Additionally, each node interacts with neighboring nodes and solvent (empty) sites within a range ri. Each node execute their stochastic motion with the Metropolis algorithm subject to bond length fluctuation and excluded volume constraints. Mean square displacements of the center node and that of its center of mass are investigated as a function of time step for a set of these parameters. The radius of gyration (Rg) is also examined concurrently to understand its relaxation. Multi-scale segmental dynamics of the sheet is studied by identifying the power-law dependence in various time regimes. Relaxation of Rg and its dependence of temperature are planned to be discussed.

Novel doorways and resonances in large-scale classical systems

NASA Astrophysics Data System (ADS)

Franco-Villafañe, J. A.; Flores, J.; Mateos, J. L.; Méndez-Sánchez, R. A.; Novaro, O.; Seligman, T. H.

2011-05-01

We show how the concept of doorway states carries beyond its typical applications and usual concepts. The scale on which it may occur is increased to large classical wave systems. Specifically we analyze the seismic response of sedimentary basins covered by water-logged clays, a rather common situation for urban sites. A model is introduced in which the doorway state is a plane wave propagating in the interface between the sediments and the clay. This wave is produced by the coupling of a Rayleigh and an evanescent SP-wave. This in turn leads to a strong resonant response in the soft clays near the surface of the basin. Our model calculations are compared with measurements during Mexico City earthquakes, showing quite good agreement. This not only provides a transparent explanation of catastrophic resonant seismic response in certain basins but at the same time constitutes up to this date the largest-scale example of the doorway state mechanism in wave scattering. Furthermore the doorway state itself has interesting and rather unusual characteristics.

Recurrence of water bodies in the hyperarid core of the Atacama Desert - New insights into the Late Pleistocene paleoclimate history of Northern Chile

NASA Astrophysics Data System (ADS)

Diederich, J. L.; Wennrich, V.; Fernández Galego, E.; Ritter, B.; Brill, D.; Niemann, K.; Rolf, C.; Melles, M.

2017-12-01

The Atacama Desert of northern Chile is regarded as the driest desert on Earth. Although still controversially discussed, overall arid to hyperarid conditions in the Atacama are thought to have persisted at least since the early Miocene, but were frequently punctuated by pluvial phases. The knowledge of past changes in humidity is strongly hampered by the fact that sediment records from the central Atacama Desert, which enable longer-scale precipitation reconstructions, are rare and mostly restricted to the Miocene/Pliocene or the late Pleistocene <50 kyrs. In this study, we focus on a sediment record from the hyperarid core of the Atacama Desert, derived from a tectonically blocked clay pan in the Coastal Cordillera (20°04'33.64"S, 69°55'01.75"W). This clay pan `Huara' has been initially investigated by a geophysical survey in spring 2015, followed by drilling of a short core (HU-III) covering the uppermost 4 m of sediment. Initial results of the ground penetrating radar (GPR) and horizontal to vertical (H/V) spectral ratio measurements indicate well-stratified sediment bodies in the basin with a maximum sediment infill of 30 ± 4 m. The chronology of core HU-III was established by a combination of optically stimulated luminescence (OSL) and paleomagnetic dating. The sedimentological and geochemical data of core HU-III as well as it's sediment geophysical properties indicate the primary accumulation of fine-grained sediments over the past ca. 50 kyrs, interpreted to be deposited under arid conditions with only sporadic precipitation. Intercalated coarser horizons indicate several periods of semiarid climate conditions, causing multiple phases of local alluvial deposition from the interior catchment area into the clay pan. The results are in agreement with a cosmogenic nuclide study from an adjacent meander system, indicating that the whole sediment sequence of the Huara clay pan covers the regional climate history of the past 500 - 700 kyrs.

State Paths of Clay Dominated Soils of Coastal Marshland: Scale Effect and Hydrodynamic Behaviour

NASA Astrophysics Data System (ADS)

Tojo Radimy, Raymond; Dudoignon, Patrick

2017-12-01

The paper is focused on clayey dominated sediments of coastal marshes of the West Atlantic coast of France because of their homogeneity in texture and mineralogy, and their vertical structure evolution from dried and solid state in surface down to saturated plastic-to-liquid state in depth. It proposes a “review” of the complementary petrographic and hydromechanical data obtained on theses clay dominated soils and a method of calculation for the relationships prevailing between the hydro-mechanical properties and microstructure behaviour of the clay matrices. This tool, based on the shrinkage curve of the clay matrix is applied as aid to the hydraulic management of marshlands regarding the soil-plant interactions.

Global distribution of clay-size minerals on land surface for biogeochemical and climatological studies

PubMed Central

Ito, Akihiko; Wagai, Rota

2017-01-01

Clay-size minerals play important roles in terrestrial biogeochemistry and atmospheric physics, but their data have been only partially compiled at global scale. We present a global dataset of clay-size minerals in the topsoil and subsoil at different spatial resolutions. The data of soil clay and its mineralogical composition were gathered through a literature survey and aggregated by soil orders of the Soil Taxonomy for each of the ten groups: gibbsite, kaolinite, illite/mica, smectite, vermiculite, chlorite, iron oxide, quartz, non-crystalline, and others. Using a global soil map, a global dataset of soil clay-size mineral distribution was developed at resolutions of 2' to 2° grid cells. The data uncertainty associated with data variability and assumption was evaluated using a Monte Carlo method, and validity of the clay-size mineral distribution obtained in this study was examined by comparing with other datasets. The global soil clay data offer spatially explicit studies on terrestrial biogeochemical cycles, dust emission to the atmosphere, and other interdisciplinary earth sciences. PMID:28829435

Collective Structural Changes in Vermiculite Clay Suspensions Induced by Cesium Ions

NASA Astrophysics Data System (ADS)

Motokawa, Ryuhei; Endo, Hitoshi; Yokoyama, Shingo; Nishitsuji, Shotaro; Kobayashi, Tohru; Suzuki, Shinichi; Yaita, Tsuyoshi

2014-10-01

Following the Fukushima Daiichi nuclear disaster in 2011, Cs radioisotopes have been dispersed over a wide area. Most of the Cs has remained on the surface of the soil because Cs+ is strongly adsorbed in the interlayer spaces of soil clays, particularly vermiculite. We have investigated the microscopic structure of an aqueous suspension of vermiculite clay over a wide length scale (1-1000 Å) by small-angle X-ray scattering. We determined the effect of the adsorption behavior of Cs+ on the structural changes in the clay. It was found that the abruption of the clay sheets was induced by the localization of Cs+ at the interlayer. This work provides important information for predicting the environmental fate of radioactive Cs in polluted areas, and for developing methods to extract Cs from the soil and reduce radioactivity.

The influence of tennis court surfaces on player perceptions and biomechanical response.

PubMed

Starbuck, Chelsea; Damm, Loïc; Clarke, James; Carré, Matt; Capel-Davis, Jamie; Miller, Stuart; Stiles, Victoria; Dixon, Sharon

2016-09-01

This study aimed to examine player perceptions and biomechanical responses to tennis surfaces and to evaluate the influence of prior clay court experience. Two groups with different clay experiences (experience group, n = 5 and low-experience group, n = 5) performed a 180° turning movement. Three-dimensional ankle and knee movements (50 Hz), plantar pressure of the turning step (100 Hz) and perception data (visual analogue scale questionnaire) were collected for two tennis courts (acrylic and clay). Greater initial knee flexion (acrylic 20. 8 ± 11.2° and clay 32.5 ± 9.4°) and a more upright position were reported on the clay compared to the acrylic court (P < 0.05). This suggests adaptations to increase player stability on clay. Greater hallux pressures and lower midfoot pressures were observed on the clay court, allowing for sliding whilst providing grip at the forefoot. Players with prior clay court experience exhibited later peak knee flexion compared to those with low experience. All participants perceived the differences in surface properties between courts and thus responded appropriately to these differences. The level of previous clay court experience did not influence players' perceptions of the surfaces; however, those with greater clay court experience may reduce injury risk as a result of reduced loading through later peak knee flexion.

Dynamics of the microaggregate composition of chernozem in relation to changes in the content of organic matter

NASA Astrophysics Data System (ADS)

Kryshchenko, V. S.; Zamulina, I. V.; Rybyanets, T. V.; Kravtsova, N. E.; Biryukova, O. A.; Golozubov, O. M.

2016-06-01

Monitoring of soil dispersivity and humus state has been performed in the stationary profile of ordinary chernozem in the Botanic Garden of the Southern Federal University in 2009-2014. The contents of physical clay and sand are almost stable in time, which indicates a quasi-static (climax) equilibrium in the soil. Another (reversible dynamic) process occurs simultaneously: seasonal and annual variation in the mass fractions of clay and silt in physical clay. Variations of humus content in the whole soil and in its physical clay are also observed on the background of seasonal changes in precipitation and temperature. A procedure has been developed for the analysis of the polydisperse soil system with consideration for the quasi-static and dynamic equilibriums. A two-vector coordinate system has been introduced, which consists of scales for changes in the contents of physical clay and physical sand in 100 g of soil and changes in the fractions of clay and silt in 100 g of physical clay. Co-measurements of two dispersivity series of soil samples—actual dynamic and calculated under quasi-static equilibrium (ideal)—have been performed. Dynamic equilibrium coefficients, which cumulatively reflect the varying proportions of physical clay and physical sand in the soil and the mass fractions of clay and silt in physical clay, have been calculated.

Complex multifractal nature in Mycobacterium tuberculosis genome

PubMed Central

Mandal, Saurav; Roychowdhury, Tanmoy; Chirom, Keilash; Bhattacharya, Alok; Brojen Singh, R. K.

2017-01-01

The mutifractal and long range correlation (C(r)) properties of strings, such as nucleotide sequence can be a useful parameter for identification of underlying patterns and variations. In this study C(r) and multifractal singularity function f(α) have been used to study variations in the genomes of a pathogenic bacteria Mycobacterium tuberculosis. Genomic sequences of M. tuberculosis isolates displayed significant variations in C(r) and f(α) reflecting inherent differences in sequences among isolates. M. tuberculosis isolates can be categorised into different subgroups based on sensitivity to drugs, these are DS (drug sensitive isolates), MDR (multi-drug resistant isolates) and XDR (extremely drug resistant isolates). C(r) follows significantly different scaling rules in different subgroups of isolates, but all the isolates follow one parameter scaling law. The richness in complexity of each subgroup can be quantified by the measures of multifractal parameters displaying a pattern in which XDR isolates have highest value and lowest for drug sensitive isolates. Therefore C(r) and multifractal functions can be useful parameters for analysis of genomic sequences. PMID:28440326

Complex multifractal nature in Mycobacterium tuberculosis genome

NASA Astrophysics Data System (ADS)

Mandal, Saurav; Roychowdhury, Tanmoy; Chirom, Keilash; Bhattacharya, Alok; Brojen Singh, R. K.

2017-04-01

The mutifractal and long range correlation (C(r)) properties of strings, such as nucleotide sequence can be a useful parameter for identification of underlying patterns and variations. In this study C(r) and multifractal singularity function f(α) have been used to study variations in the genomes of a pathogenic bacteria Mycobacterium tuberculosis. Genomic sequences of M. tuberculosis isolates displayed significant variations in C(r) and f(α) reflecting inherent differences in sequences among isolates. M. tuberculosis isolates can be categorised into different subgroups based on sensitivity to drugs, these are DS (drug sensitive isolates), MDR (multi-drug resistant isolates) and XDR (extremely drug resistant isolates). C(r) follows significantly different scaling rules in different subgroups of isolates, but all the isolates follow one parameter scaling law. The richness in complexity of each subgroup can be quantified by the measures of multifractal parameters displaying a pattern in which XDR isolates have highest value and lowest for drug sensitive isolates. Therefore C(r) and multifractal functions can be useful parameters for analysis of genomic sequences.

Large scale structures in liquid crystal/clay colloids

NASA Astrophysics Data System (ADS)

van Duijneveldt, Jeroen S.; Klein, Susanne; Leach, Edward; Pizzey, Claire; Richardson, Robert M.

2005-04-01

Suspensions of three different clays in K15, a thermotropic liquid crystal, have been studied by optical microscopy and small angle x-ray scattering. The three clays were claytone AF, a surface treated natural montmorillonite, laponite RD, a synthetic hectorite, and mined sepiolite. The claytone and laponite were sterically stabilized whereas sepiolite formed a relatively stable suspension in K15 without any surface treatment. Micrographs of the different suspensions revealed that all three suspensions contained large scale structures. The nature of these aggregates was investigated using small angle x-ray scattering. For the clays with sheet-like particles, claytone and laponite, the flocs contain a mixture of stacked and single platelets. The basal spacing in the stacks was independent of particle concentration in the suspension and the phase of the solvent. The number of platelets in the stack and their percentage in the suspension varied with concentration and the aspect ratio of the platelets. The lath shaped sepiolite did not show any tendency to organize into ordered structures. Here the aggregates are networks of randomly oriented single rods.

Plio Quaternary tectonic evolution and structure of the Catania foredeep, the northern Hyblean Plateau and the Ionian shelf (SE Sicily)

NASA Astrophysics Data System (ADS)

Torelli, Luigi; Grasso, Mario; Mazzoldi, Glauco; Peis, Davide

1998-11-01

Available multi- and single-channel seismic reflection profiles, calibrated by onshore borehole data, have been used for defining the structural styles in the shelf and slope of the Ionian Sea between Catania and Augusta (SE Sicily). The geological and geophysical data suggest that this area represents a segment of the foredeep-foreland system which collapsed after Late Pliocene times. The foundering was controlled by normal faults trending NE-SW, which flank the southern margin of the Catania foredeep. Onland, in outcrop, these faults appear largely to be post-dated by Lower Pleistocene sediments, nearshore carbonates passing laterally into basinal clays, which lie unconformably upon older substrata. Offshore, close to the southern edge of the foredeep, seismic lines allow recognition of two distinct units: a syn-rift wedge (Upper Pliocene submarine tholeiites and sediments), and a post-rift sequence which can be correlated with Lower Pleistocene carbonates, sands and clays recognisable on land, both in outcrop and by borehole data. The true frontal part of the thrust belt, as detected by the seismic lines, occupies the inner part of the area investigated and is buried by Upper Pliocene and Lower Pleistocene sediments. However, the compressive deformation seems to propagate toward the south-southeast by means of growing detachment levels developing at depth within Pleistocene marine clays, for a length of about 10 km, ahead of the present-day thrust front. Offshore, the faults trending NE-SW are dissected towards the east by faults trending NNW-SSE, subparallel to the Malta Escarpment, which flank the edge of the submerged Messina Rise. These faults, originating in a steep scarp which drops eastwards to the deep Ionian basin, have triggered submarine slides and affected the present-day seafloor sediments. As shown by seismic lines and as stressed by the modern seismicity of the area, some of the faults along the Malta Escarpment could be still active.

Clays of Ladon Basin

NASA Image and Video Library

2018-01-23

Ladon Basin was a large impact structure that was filled in by the deposits from Ladon Valles, a major ancient river on Mars as seen in this image from NASA's Mars Reconnaissance Orbiter (MRO). These wet sediments were altered into minerals such as various clay minerals. Clays imply chemistry that may have been favorable for life on ancient Mars, if anything lived there, so this could be a good spot for future exploration by rovers and perhaps return of samples to Earth. The map is projected here at a scale of 50 centimeters (19.7 inches) per pixel. [The original image scale is 52.1 centimeters (20.5 inches) per pixel (with 2 x 2 binning); objects on the order of 156 centimeters (61.4 inches) across are resolved.] North is up. https://photojournal.jpl.nasa.gov/catalog/PIA22183

Nanowire-nanopore transistor sensor for DNA detection during translocation

NASA Astrophysics Data System (ADS)

Xie, Ping; Xiong, Qihua; Fang, Ying; Qing, Quan; Lieber, Charles

2011-03-01

Nanopore sequencing, as a promising low cost, high throughput sequencing technique, has been proposed more than a decade ago. Due to the incompatibility between small ionic current signal and fast translocation speed and the technical difficulties on large scale integration of nanopore for direct ionic current sequencing, alternative methods rely on integrated DNA sensors have been proposed, such as using capacitive coupling or tunnelling current etc. But none of them have been experimentally demonstrated yet. Here we show that for the first time an amplified sensor signal has been experimentally recorded from a nanowire-nanopore field effect transistor sensor during DNA translocation. Independent multi-channel recording was also demonstrated for the first time. Our results suggest that the signal is from highly localized potential change caused by DNA translocation in none-balanced buffer condition. Given this method may produce larger signal for smaller nanopores, we hope our experiment can be a starting point for a new generation of nanopore sequencing devices with larger signal, higher bandwidth and large-scale multiplexing capability and finally realize the ultimate goal of low cost high throughput sequencing.

The acid-base titration of montmorillonite

NASA Astrophysics Data System (ADS)

Bourg, I. C.; Sposito, G.; Bourg, A. C.

2003-12-01

Proton binding to clay minerals plays an important role in the chemical reactivity of soils (e.g., acidification, retention of nutrients or pollutants). If should also affect the performance of clay barriers for waste disposal. The surface acidity of clay minerals is commonly modelled empirically by assuming generic amphoteric surface sites (>SOH) on a flat surface, with fitted site densities and acidity constant. Current advances in experimental methods (notably spectroscopy) are rapidly improving our understanding of the structure and reactivity of the surface of clay minerals (arrangement of the particles, nature of the reactive surface sites, adsorption mechanisms). These developments are motivated by the difficulty of modelling the surface chemistry of mineral surfaces at the macro-scale (e.g., adsorption or titration) without a detailed (molecular-scale) picture of the mechanisms, and should be progressively incorporated into surface complexation models. In this view, we have combined recent estimates of montmorillonite surface properties (surface site density and structure, edge surface area, surface electrostatic potential) with surface site acidities obtained from the titration of alpha-Al2O3 and SiO2, and a novel method of accounting for the unknown initial net proton surface charge of the solid. The model predictions were compared to experimental titrations of SWy-1 montmorillonite and purified MX-80 bentonite in 0.1-0.5 mol/L NaClO4 and 0.005-0.5 mol/L NaNO3 background electrolytes, respectively. Most of the experimental data were appropriately described by the model after we adjusted a single parameter (silanol sites on the surface of montmorillonite were made to be slightly more acidic than those of silica). At low ionic strength and acidic pH the model underestimated the buffering capacity of the montmorillonite, perhaps due to clay swelling or to the interlayer adsorption of dissolved aluminum. The agreement between our model and the experimental data illustrates the complementarity of molecular and macro-scale descriptions of the clay reactivity.

Continuous Mass Measurement on Conveyor Belt

NASA Astrophysics Data System (ADS)

Tomobe, Yuki; Tasaki, Ryosuke; Yamazaki, Takanori; Ohnishi, Hideo; Kobayashi, Masaaki; Kurosu, Shigeru

The continuous mass measurement of packages on a conveyor belt will become greatly important. In the mass measurement, the sequence of products is generally random. An interesting possibility of raising throughput of the conveyor line without increasing the conveyor belt speed is offered by the use of two or three conveyor belt scales (called a multi-stage conveyor belt scale). The multi-stage conveyor belt scale can be created which will adjust the conveyor belt length to the product length. The conveyor belt scale usually has maximum capacities of less than 80kg and 140cm, and achieves measuring rates of more than 150 packages per minute and more. The output signals from the conveyor belt scale are always contaminated with noises due to vibrations of the conveyor and the product to be measured in motion. In this paper an employed digital filter is of Finite Impulse Response (FIR) type designed under the consideration on the dynamics of the conveyor system. The experimental results on the conveyor belt scale suggest that the filtering algorithms are effective enough to practical applications to some extent.

Imaging different components of a tectonic tremor sequence in southwestern Japan using an automatic statistical detection and location method

NASA Astrophysics Data System (ADS)

Poiata, Natalia; Vilotte, Jean-Pierre; Bernard, Pascal; Satriano, Claudio; Obara, Kazushige

2018-02-01

In this study, we demonstrate the capability of an automatic network-based detection and location method to extract and analyse different components of tectonic tremor activity by analysing a 9-day energetic tectonic tremor sequence occurring at the down-dip extension of the subducting slab in southwestern Japan. The applied method exploits the coherency of multi-scale, frequency-selective characteristics of non-stationary signals recorded across the seismic network. Use of different characteristic functions, in the signal processing step of the method, allows to extract and locate the sources of short-duration impulsive signal transients associated with low-frequency earthquakes and of longer-duration energy transients during the tectonic tremor sequence. Frequency-dependent characteristic functions, based on higher-order statistics' properties of the seismic signals, are used for the detection and location of low-frequency earthquakes. This allows extracting a more complete (˜6.5 times more events) and time-resolved catalogue of low-frequency earthquakes than the routine catalogue provided by the Japan Meteorological Agency. As such, this catalogue allows resolving the space-time evolution of the low-frequency earthquakes activity in great detail, unravelling spatial and temporal clustering, modulation in response to tide, and different scales of space-time migration patterns. In the second part of the study, the detection and source location of longer-duration signal energy transients within the tectonic tremor sequence is performed using characteristic functions built from smoothed frequency-dependent energy envelopes. This leads to a catalogue of longer-duration energy sources during the tectonic tremor sequence, characterized by their durations and 3-D spatial likelihood maps of the energy-release source regions. The summary 3-D likelihood map for the 9-day tectonic tremor sequence, built from this catalogue, exhibits an along-strike spatial segmentation of the long-duration energy-release regions, matching the large-scale clustering features evidenced from the low-frequency earthquake's activity analysis. Further examination of the two catalogues showed that the extracted short-duration low-frequency earthquakes activity coincides in space, within about 10-15 km distance, with the longer-duration energy sources during the tectonic tremor sequence. This observation provides a potential constraint on the size of the longer-duration energy-radiating source region in relation with the clustering of low-frequency earthquakes activity during the analysed tectonic tremor sequence. We show that advanced statistical network-based methods offer new capabilities for automatic high-resolution detection, location and monitoring of different scale-components of tectonic tremor activity, enriching existing slow earthquakes catalogues. Systematic application of such methods to large continuous data sets will allow imaging the slow transient seismic energy-release activity at higher resolution, and therefore, provide new insights into the underlying multi-scale mechanisms of slow earthquakes generation.

Optimization Method of a Low Cost, High Performance Ceramic Proppant by Orthogonal Experimental Design

NASA Astrophysics Data System (ADS)

Zhou, Y.; Tian, Y. M.; Wang, K. Y.; Li, G.; Zou, X. W.; Chai, Y. S.

2017-09-01

This study focused on optimization method of a ceramic proppant material with both low cost and high performance that met the requirements of Chinese Petroleum and Gas Industry Standard (SY/T 5108-2006). The orthogonal experimental design of L9(34) was employed to study the significance sequence of three factors, including weight ratio of white clay to bauxite, dolomite content and sintering temperature. For the crush resistance, both the range analysis and variance analysis reflected the optimally experimental condition was weight ratio of white clay to bauxite=3/7, dolomite content=3 wt.%, temperature=1350°C. For the bulk density, the most important factor was the sintering temperature, followed by the dolomite content, and then the ratio of white clay to bauxite.

Progressive transmission of road network

NASA Astrophysics Data System (ADS)

Ai, Bo; Ai, Tinghua; Tang, Xinming; Li, Zhen

2009-10-01

The progressive transmission of vector map data requires efficient multi-scale data model to process the data into hierarchical structure. This paper presents such a data structure of road network without redundancy of geometry for progressive transmission. For a given scale, the road network display has to settle two questions. One is which road objects to be represented and the other is what geometric details to be visualized for the selected roads. This paper combines the Töpfer law and the BLG-tree structure into a multi-scale representation matrix to answer simultaneously the above two questions. In the matrix, rows from top to bottom represent the roads in the sequence of descending classification of traffic and length, which can support the Töpfer law to retrieve the more important roads. In a row, columns record one road by a linear BLG-tree to provide good line graphics.

Dealing with CATV

ERIC Educational Resources Information Center

Journalism Educator, 1976

1976-01-01

Includes "Cable, Commercial TV Enable Students to Do News in Color" (Dennis A. Harp and Clay Kistler), "Separate Courses, Sequences Not Needed for Cable Television" (Peter B. Orlik), and "Cable Television Professionals Help Students Gain Perspective" (David Eshelman). (KS)

IN-SERVICE HYDRAULIC CONDUCTIVITY OF GCLS IN LANDFILL COVERS - LABORATORY AND FIELD STUDIES

EPA Science Inventory

Laboratory experiments using multi-species inorganic solutions (containing calcium and sodium) were conducted on specimens of a new geosynthetic clay liner (GCL) containing sodium bentonite to determine how cation exchange and desiccation affected the hydraulic conductivity. Calc...

Iridium, sulfur isotopes and rare earth elements in the Cretaceous-Tertiary boundary clay at Stevns Klint, Denmark

NASA Astrophysics Data System (ADS)

Schmitz, Birger; Andersson, Per; Dahl, Jeremy

1988-01-01

Microbial activity and redox-controlled precipitation have been of major importance in the process of metal accumulation in the strongly Ir-enriched Cretaceous-Tertiary (K-T) boundary clay, the Fish Clay, at Stevns Klint in Denmark. Two important findings support this view: 1) Kerogen, recovered by leaching the Fish Clay in HCl and HF, shows an Ir concentration of 1100 ppb; this represents about 50% of the Ir present in the bulk sample Fish Clay. Strong organometallic complexes is the most probable carrier phase for this fraction of Ir. Kerogen separated from the K-T boundary clay at Caravaca, Spain, similarly exhibits enhanced Ir concentrations. 2) Sulfur isotope analyses of metal-rich pyrite spherules, which occur in extreme abundance (about 10% by weight) in the basal Fish Clay, give a δ 34S value of -32%.. This very low value shows that sulfide formation by anaerobic bacteria was intensive in the Fish Clay during early diagenesis. Since the pyrite spherules are major carriers of elements such as Ni, Co, As, Sb and Zn, microbial activity may have played an important role for concentrating these elements. In the Fish Clay large amounts of rare earth elements have precipitated from sea water on fish scales. Analyses reveal that, compared with sea water, the Fish Clay is only about four times less enriched in sea-water derived lanthanides than in Ir. This shows that a sea-water origin is plausible for elements that are strongly enriched in the clay, but whose origin cannot be accounted for by a lithogenic precursor.

The Effect of Art Therapy with Clay on Hopelessness Levels Among Neurology Patients.

PubMed

Akhan, Latife Utas; Kurtuncu, Meltem; Celik, Sevim

This study was performed to determine the effect of art therapy with clay on hopelessness levels of patients under treatment in departments of neurology. The study was of one group, pre- and posttest design. This study was performed on patients who were hospitalized in the neurology departments of a university and a state hospital between February and May 2012 in Turkey. The sample for the study comprised 50 neurology patients with diagnoses of epilepsy (17 patients) and stroke (33 patients). The patients in the study were asked to create objects of clay of any shape they desired. Data for the research were collected with a sociodemographic data form and by using the Beck Hopelessness Scale (BHS). While BHS scores of neurology patients before clay therapy were found higher compared to the scores after therapy with clay, there was also a statistically significant difference. After clay therapy, BHS scores were lower in women, in married patients, in patients who suffered from a stroke, people who had chronic disease, people without psychological illness, and in the case of children. The study showed that clay therapy had an impact on the hopelessness levels of neurology patients. Art therapy with clay may be used for rehabilitation purposes in neurology patients, both in the hospital and at home after discharge.

The effect of nanoclay on the rheology and dynamics of polychlorinated biphenyl.

PubMed

Roy, D; Casalini, R; Roland, C M

2015-12-28

The thermal, rheological, and mechanical and dielectric relaxation properties of exfoliated dispersions of montmorillonite clay in a molecular liquid, polychlorobiphenyl (PCB), were studied. The viscosity enhancement at low concentrations of clay (≤5%) exceeded by a factor of 50 the increase obtainable with conventional fillers. However, the effect of the nanoclay on the local dynamics, including the glass transition temperature, was quite small. All materials herein conformed to density-scaling of the reorientation relaxation time of the PCB for a common value of the scaling exponent. A new relaxation process was observed in the mixtures, associated with PCB molecules in proximity to the clay surface. This process has an anomalously high dielectric strength, suggesting a means to exploit nanoparticles to achieve large electrical energy absorption. This lower frequency dispersion has a weaker dependence on pressure and density, consistent with dynamics constrained by interactions with the particle surface.

Optical dating of late Holocene storm surges from Schokland (Noordoostpolder, the Netherlands)

NASA Astrophysics Data System (ADS)

van den Biggelaar, Don; Kluiving, Sjoerd; van Balen, Roland; Kasse, Cronelils; Troelstra, Simon; Prins, Maarten; Wallinga, Jakob; Versendaal, Alice

2015-04-01

Storm surges have a major impact on land use and human habitation in coastal regions. Our understanding of this impact can be improved by correlating long-term historical storm records with sedimentary evidence of storm surges, but so far few studies use such an approach. Here we present detailed geological and historical data on late Holocene storm surges from the former island Schokland, located in the northern part of Flevoland (central Netherlands). During the late Holocene, Schokland transformed from a peat area that gradually inundated (~1200 yr ago) via an island in a marine environment (~400 yr ago) to a land-locked island in the reclaimed Province of Flevoland (~70 yr ago). Deposits formed between 1200 and 70 year ago on lower parts of the island, consist of a stacked sequence of clay and sand layers, with the latter being deposited during storm surges. We dated the sandy laminae of late Holocene storm surges in the clay deposit on Schokland to improve the age model of the island's flooding history during the last 1200 years. Samples for dating were obtained from a mechanical core at Schokland. The top of the peat underlying the clay and sand deposits was dated using 14C accelerator mass spectrometry (AMS) of terrestrial plant and seed material. Sandy intervals of the flood deposits were dated using a series of ten quartz OSL ages, which were obtained using state-of-the-art methods to deal with incomplete resetting of the OSL signal. These new dates, together with laboratory analyses on the clay deposit (thermogravimetric analysis, grain-size analyses, foraminifera, bivalves and ostracods) and a literature study show that storm surges had a major impact on both the sedimentary and the anthropogenic history of Schokland. The results show that the stacked clay sequence is younger than expected, indicating either an increasing sedimentation rate or reworking of the clay by storm surges. Furthermore, the results indicate that a correlation can be made between the sedimentary remains of late Holocene storm surges and several major storm surges mentioned in the historical sources that eroded parts of Schokland.

Clay-sewage sludge co-pyrolysis. A TG-MS and Py-GC study on potential advantages afforded by the presence of clay in the pyrolysis of wastewater sewage sludge

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ischia, Marco, E-mail: marco.ischia@ing.unitn.it; Maschio, Roberto Dal; Grigiante, Maurizio

2011-01-15

Wastewater sewage sludge was co-pyrolyzed with a well characterized clay sample, in order to evaluate possible advantages in the thermal disposal process of solid waste. Characterization of the co-pyrolysis process was carried out both by thermogravimetric-mass spectrometric (TG-MS) analysis, and by reactor tests, using a lab-scale batch reactor equipped with a gas chromatograph for analysis of the evolved gas phase (Py-GC). Due to the presence of clay, two main effects were observed in the instrumental characterization of the process. Firstly, the clay surface catalyzed the pyrolysis reaction of the sludge, and secondly, the release of water from the clay, atmore » temperatures of approx. 450-500 deg. C, enhanced gasification of part of carbon residue of the organic component of sludge following pyrolysis. Moreover, the solid residue remaining after pyrolysis process, composed of the inorganic component of sludge blended with clay, is characterized by good features for possible disposal by vitrification, yielding a vitreous matrix that immobilizes the hazardous heavy metals present in the sludge.« less

Universal scaling function in discrete time asymmetric exclusion processes

NASA Astrophysics Data System (ADS)

Chia, Nicholas; Bundschuh, Ralf

2005-03-01

In the universality class of the one dimensional Kardar-Parisi-Zhang surface growth, Derrida and Lebowitz conjectured the universality of not only the scaling exponents, but of an entire scaling function. Since Derrida and Lebowitz' original publication this universality has been verified for a variety of continuous time systems in the KPZ universality class. We study the Derrida-Lebowitz scaling function for multi-particle versions of the discrete time Asymmetric Exclusion Process. We find that in this discrete time system the Derrida-Lebowitz scaling function not only properly characterizes the large system size limit, but even accurately describes surprisingly small systems. These results have immediate applications in searching biological sequence databases.

INTERIOR VIEW SHOWING BATCH SCALES. SERIES OF FIVE SCALES WITH ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

INTERIOR VIEW SHOWING BATCH SCALES. SERIES OF FIVE SCALES WITH SIX DIFFERENT MATERIALS. MIX SIFTED DOWN FROM SILOS ABOVE. INGREDIENTS: SAND, SODA ASH, DOLOMITE LIMESTONE, NEPHELINE SYENITE, SALT CAKE. - Chambers-McKee Window Glass Company, Batch Plant, Clay Avenue Extension, Jeannette, Westmoreland County, PA

Transient Electromagnetic Study of the Geologic Framework, Upper San Pedro Basin, Mexico

NASA Astrophysics Data System (ADS)

Bultman, M. W.; Gray, F.; Flemming, J. B.; Callegary, J.; Kleinkopf, M. D.

2006-12-01

The San Pedro River flows north from near Cananea, Mexico into the U.S. and ends at its confluence with the Gila River in Arizona. The river supports a riparian habitat that is important for its biological diversity and is the most significant flyway for migrating birds in southwest North America. Nearby communities in Arizona and Mexico are pumping groundwater from basin fill in the San Pedro valley and there is much concern about the effects of this pumping on the baseflow of the San Pedro River. Local, State, and National agencies have been studying this issue from a wide variety of perspectives. To help address the problem, the U.S. Geological Survey has undertaken an integrative research effort utilizing geologic mapping, multiple geophysical techniques, and multi-spectral imaging to better understand the geology, geometry, structure and basin fill sediments in the San Pedro basin in Mexico. An existing aeromagnetic survey coupled with a natural source audio frequency magnetotelluric study indicates that the basin is less than 1km deep in most places and contains at least two sub-basins. These sub-basins are separated by a subsurface bedrock high that is well below the present water table. Also, several vertical electrical soundings, acquired by Grupo Mexico in the region, indicate that the central portion of the basin may contain several, potentially thick, sequences of clay. The transient electromagnetic (TEM) survey was designed to provide more information on the nature of the basin fill sediments and to provide a better estimate of the depth of the bedrock structural high. The TEM data was acquired with a Zonge ZeroTEM instrument at 104 locations with 150m per side square loops using approximately 3.6 amps of current at a base frequency of 16 Hz. The locations of the TEM stations, generally spaced 0.5km apart, were designed to obtain a conductivity-depth profile along approximately 30km of the San Pedro River in Mexico and at three locations perpendicular to the river. At each station location one reading was taken in the center of the loop and two were taken outside the loop at a distance of 150m from the loop center. The data was inverted for subsurface resistivity layers using EMIGMA software with most inversions being constrained to depths of 500m or less. The outside readings are used to give an indication if there are three-dimensional geologic effects present that may influence the one-dimensional inversion routine. The results indicate that the central portion of the basin along the path of the San Pedro River contains two to three clay sequences that are over 100m thick in some locations. The clay sequences diminish in the basin margins to the east and west of the river. The bedrock structural high between the two sub-basins is not shallower than about 250m and likely does not significantly influence groundwater flow. The location and thickness of the clay sediments appear to be the important factor in the basin groundwater hydrology in the upper 300m of the basin fill. The TEM data also indicates that the basin bedrock geometry may be much more complicated than two simple sub-basins separated by a bedrock high.

3D mechanical stratigraphy of a deformed multi-layer: Linking sedimentary architecture and strain partitioning

NASA Astrophysics Data System (ADS)

Cawood, Adam J.; Bond, Clare E.

2018-01-01

Stratigraphic influence on structural style and strain distribution in deformed sedimentary sequences is well established, in models of 2D mechanical stratigraphy. In this study we attempt to refine existing models of stratigraphic-structure interaction by examining outcrop scale 3D variations in sedimentary architecture and the effects on subsequent deformation. At Monkstone Point, Pembrokeshire, SW Wales, digital mapping and virtual scanline data from a high resolution virtual outcrop have been combined with field observations, sedimentary logs and thin section analysis. Results show that significant variation in strain partitioning is controlled by changes, at a scale of tens of metres, in sedimentary architecture within Upper Carboniferous fluvio-deltaic deposits. Coupled vs uncoupled deformation of the sequence is defined by the composition and lateral continuity of mechanical units and unit interfaces. Where the sedimentary sequence is characterized by gradational changes in composition and grain size, we find that deformation structures are best characterized by patterns of distributed strain. In contrast, distinct compositional changes vertically and in laterally equivalent deposits results in highly partitioned deformation and strain. The mechanical stratigraphy of the study area is inherently 3D in nature, due to lateral and vertical compositional variability. Consideration should be given to 3D variations in mechanical stratigraphy, such as those outlined here, when predicting subsurface deformation in multi-layers.

The detailed 3D multi-loop aggregate/rosette chromatin architecture and functional dynamic organization of the human and mouse genomes.

PubMed

Knoch, Tobias A; Wachsmuth, Malte; Kepper, Nick; Lesnussa, Michael; Abuseiris, Anis; Ali Imam, A M; Kolovos, Petros; Zuin, Jessica; Kockx, Christel E M; Brouwer, Rutger W W; van de Werken, Harmen J G; van IJcken, Wilfred F J; Wendt, Kerstin S; Grosveld, Frank G

2016-01-01

The dynamic three-dimensional chromatin architecture of genomes and its co-evolutionary connection to its function-the storage, expression, and replication of genetic information-is still one of the central issues in biology. Here, we describe the much debated 3D architecture of the human and mouse genomes from the nucleosomal to the megabase pair level by a novel approach combining selective high-throughput high-resolution chromosomal interaction capture ( T2C ), polymer simulations, and scaling analysis of the 3D architecture and the DNA sequence. The genome is compacted into a chromatin quasi-fibre with ~5 ± 1 nucleosomes/11 nm, folded into stable ~30-100 kbp loops forming stable loop aggregates/rosettes connected by similar sized linkers. Minor but significant variations in the architecture are seen between cell types and functional states. The architecture and the DNA sequence show very similar fine-structured multi-scaling behaviour confirming their co-evolution and the above. This architecture, its dynamics, and accessibility, balance stability and flexibility ensuring genome integrity and variation enabling gene expression/regulation by self-organization of (in)active units already in proximity. Our results agree with the heuristics of the field and allow "architectural sequencing" at a genome mechanics level to understand the inseparable systems genomic properties.

Coupled Multi-physical Simulations for the Assessment of Nuclear Waste Repository Concepts: Modeling, Software Development and Simulation

NASA Astrophysics Data System (ADS)

Massmann, J.; Nagel, T.; Bilke, L.; Böttcher, N.; Heusermann, S.; Fischer, T.; Kumar, V.; Schäfers, A.; Shao, H.; Vogel, P.; Wang, W.; Watanabe, N.; Ziefle, G.; Kolditz, O.

2016-12-01

As part of the German site selection process for a high-level nuclear waste repository, different repository concepts in the geological candidate formations rock salt, clay stone and crystalline rock are being discussed. An open assessment of these concepts using numerical simulations requires physical models capturing the individual particularities of each rock type and associated geotechnical barrier concept to a comparable level of sophistication. In a joint work group of the Helmholtz Centre for Environmental Research (UFZ) and the German Federal Institute for Geosciences and Natural Resources (BGR), scientists of the UFZ are developing and implementing multiphysical process models while BGR scientists apply them to large scale analyses. The advances in simulation methods for waste repositories are incorporated into the open-source code OpenGeoSys. Here, recent application-driven progress in this context is highlighted. A robust implementation of visco-plasticity with temperature-dependent properties into a framework for the thermo-mechanical analysis of rock salt will be shown. The model enables the simulation of heat transport along with its consequences on the elastic response as well as on primary and secondary creep or the occurrence of dilatancy in the repository near field. Transverse isotropy, non-isothermal hydraulic processes and their coupling to mechanical stresses are taken into account for the analysis of repositories in clay stone. These processes are also considered in the near field analyses of engineered barrier systems, including the swelling/shrinkage of the bentonite material. The temperature-dependent saturation evolution around the heat-emitting waste container is described by different multiphase flow formulations. For all mentioned applications, we illustrate the workflow from model development and implementation, over verification and validation, to repository-scale application simulations using methods of high performance computing.

Quick clay and landslides of clayey soils.

PubMed

Khaldoun, Asmae; Moller, Peder; Fall, Abdoulaye; Wegdam, Gerard; De Leeuw, Bert; Méheust, Yves; Otto Fossum, Jon; Bonn, Daniel

2009-10-30

We study the rheology of quick clay, an unstable soil responsible for many landslides. We show that above a critical stress the material starts flowing abruptly with a very large viscosity decrease caused by the flow. This leads to avalanche behavior that accounts for the instability of quick clay soils. Reproducing landslides on a small scale in the laboratory shows that an additional factor that determines the violence of the slides is the inhomogeneity of the flow. We propose a simple yield stress model capable of reproducing the laboratory landslide data, allowing us to relate landslides to the measured rheology.

Quick Clay and Landslides of Clayey Soils

NASA Astrophysics Data System (ADS)

Khaldoun, Asmae; Moller, Peder; Fall, Abdoulaye; Wegdam, Gerard; de Leeuw, Bert; Méheust, Yves; Otto Fossum, Jon; Bonn, Daniel

2009-10-01

We study the rheology of quick clay, an unstable soil responsible for many landslides. We show that above a critical stress the material starts flowing abruptly with a very large viscosity decrease caused by the flow. This leads to avalanche behavior that accounts for the instability of quick clay soils. Reproducing landslides on a small scale in the laboratory shows that an additional factor that determines the violence of the slides is the inhomogeneity of the flow. We propose a simple yield stress model capable of reproducing the laboratory landslide data, allowing us to relate landslides to the measured rheology.

Assessing the role of clay authigenesis in the seawater potassium cycle: A paired K and Mg isotope study of deep-sea pore fluids

NASA Astrophysics Data System (ADS)

Santiago Ramos, D. P.; Higgins, J. A.

2017-12-01

In situ formation of clays (clay authigenesis) in marine sediments and altered oceanic crust is an important sink of a number of seawater cations. In particular, clay authigenesis is a major, and yet unconstrained, flux in the global seawater potassium cycle. Potassium is the fourth most abundant cation in the ocean, which constitutes an isotopically enriched K reservoir (δ41K 0‰) compared to the solid Earth (δ41K -0.5‰). Understanding what processes control this isotopic offset is the main goal of this study. Here we use a multi-collector inductively coupled plasma mass spectrometer (MC-ICP-MS) to measure the K and Mg isotope ratios (41K/39K and 26Mg/24Mg) of deep-sea pore fluids in order to assess the effects of clay formation in the K isotope composition of seawater. Mg isotopes are used as an independent proxy for clay formation, since marine authigenic clays are isotopically distinct from their detrital counterpart, an abundant component of marine sediments. Our study sites (ODP/IODP 1052, U1378, U1395, U1403) vary in location, lithology, age and sedimentation rates; however, pore-fluids from all sites show decreasing K concentrations with depth, suggesting potassium uptake into the sediments. We find that although K concentration trends are similar across all sites, measured δ41K values vary significantly. Results from 1-D diffusion-advection-reaction models suggest that these differences in isotopic profiles arise from a complex interplay between sedimentation rate and K isotopic fractionation during clay formation, aqueous K diffusion and ion exchange reactions. Further, model simulations yield fractionation factors between 0.9980 and 1.0000 for clay formation in deep-sea sediments. Despite the minor contribution of these deep-sea pore-fluids as sinks of seawater K, the processes responsible for K isotope fractionation in our study sites (clay formation and aqueous K diffusion) are also observed at shallow marine systems (major K sinks) and are thus likely responsible for setting the K isotopic composition of seawater.

Sedimentologic and reservoir characteristics under the tectono-sequence stratigraphic framework: A case study from the Early Cretaceous, upper Abu Gabra sandstones, Sufyan Sub-basin, Muglad Basin, Sudan

NASA Astrophysics Data System (ADS)

Yassin, Mohamed A.; Hariri, Mustafa M.; Abdullatif, Osman M.; Makkawi, M.; Bertotti, G.; Kaminski, Michael A.

2018-06-01

The Sufyan Sub-basin is an east-west trending Sub-basin located in the northwestern part of the Muglad Basin, in the eastern extension of the West and Central Africa Rift System (WCARS). Exploration results showed the occurrence of accumulations of hydrocarbon. The source rock for these hydrocarbons is believed to be the lacustrine shale of the Abu Gabra Formation. Fluvio-deltaic sandstones within the Abu Gabra Formation represent the primary reservoir. Depositional and post-depositional processes influence reservoir heterogeneity, quality, and architecture. This study investigates different scales of reservoir heterogeneities from basin to micro scale and discusses the impact of depositional facies and diagenesis on reservoir quality. Approaches include seismic interpretation, seismic attribute analysis, well log analysis, thin sections and scanning electron microscope (SEM) investigations, and X-ray diffraction (XRD) analysis of the Abu Gabra Formation. Sedimentologic interpretation in this study was performed based on core cuttings, well logs, and seismic data. Subsurface facies analysis was analyzed based on the description of six conventional cores from two wells. Seven lithofacies in Abu Gabra Formation are identified. Four types of depositional systems are identified in the studied succession. These are braided delta, fan delta, sublacustrine fan, and lacustrine systems. The sandstone is medium to coarse-grained, poorly to moderately sorted and sub-angular to sub-rounded, sub-feldspathic arenite to quartz arenite. At the basin scale, the Abu Gabra Formation showed different sandstone bodies thickness, geometry, and architecture and are ascribed to different depositional systems. At macro and meso-scales, reservoir quality varies within the Abu Gabra reservoir where it shows progressive coarsening upward tendencies with different degrees of connectivity. The upper part of the reservoir is well connected with amalgamated sandstone bodies, however, the middle to lower parts have moderate to low sandstone body connectivity and amalgamation. At a micro-scale, sandstone reservoir quality is directly affected by texture and diagenesis. The XRD and SEM analyses show that kaolinite and chlorite clay are the common clay minerals in the studied samples. Clay matrix and quartz overgrowth have significantly reduced the reservoir porosity and permeability, while the dissolution of feldspars during the diagenetic process increase it. The estimated porosity in Abu Gabra Formation ranges from 5 to 21% with an average of 13%; while permeability varies from 0.22 to 732 mD with an average of 240 mD. The results of this study contribute to a better understanding of reservoir heterogeneities and help in reservoir quality prediction, therefore enhancing the hydrocarbon productivity.

SOBA: sequence ontology bioinformatics analysis.

PubMed

Moore, Barry; Fan, Guozhen; Eilbeck, Karen

2010-07-01

The advent of cheaper, faster sequencing technologies has pushed the task of sequence annotation from the exclusive domain of large-scale multi-national sequencing projects to that of research laboratories and small consortia. The bioinformatics burden placed on these laboratories, some with very little programming experience can be daunting. Fortunately, there exist software libraries and pipelines designed with these groups in mind, to ease the transition from an assembled genome to an annotated and accessible genome resource. We have developed the Sequence Ontology Bioinformatics Analysis (SOBA) tool to provide a simple statistical and graphical summary of an annotated genome. We envisage its use during annotation jamborees, genome comparison and for use by developers for rapid feedback during annotation software development and testing. SOBA also provides annotation consistency feedback to ensure correct use of terminology within annotations, and guides users to add new terms to the Sequence Ontology when required. SOBA is available at http://www.sequenceontology.org/cgi-bin/soba.cgi.

Understanding north-western Mediterranean climate variability: a multi-proxy and multi-sequence approach based on wavelet analysis.

NASA Astrophysics Data System (ADS)

Azuara, Julien; Lebreton, Vincent; Jalali, Bassem; Sicre, Marie-Alexandrine; Sabatier, Pierre; Dezileau, Laurent; Peyron, Odile; Frigola, Jaime; Combourieu-Nebout, Nathalie

2017-04-01

Forcings and physical mechanisms underlying Holocene climate variability still remain poorly understood. Comparison of different paleoclimatic reconstructions using spectral analysis allows to investigate their common periodicities and helps to understand the causes of past climate changes. Wavelet analysis applied on several proxy time series from the Atlantic domain already revealed the first key-issues on the origin of Holocene climate variability. However the differences in duration, resolution and variance between the time-series are important issues for comparing paleoclimatic sequences in the frequency domain. This work compiles 7 paleoclimatic proxy records from 4 time-series from the north-western Mediterranean all ranging from 7000 to 1000 yrs cal BP: -pollen and clay mineral contents from the lagoonal sediment core PB06 recovered in southern France, -Sea Surface Temperatures (SST) derived from alkenones, concentration of terrestrial alkanes and their average chain length (ACL) from core KSGC-31_GolHo-1B recovered in the Gulf of Lion inner-shelf, - δ18O record from speleothems recovered in the Asiul Cave in north-western Spain, -grain size record from the deep basin sediment drift core MD99-2343 north of Minorca island. A comparison of their frequency content is proposed using wavelet analysis and cluster analysis of wavelet power spectra. Common cyclicities are assessed using cross-wavelet analysis. In addition, a new algorithm is used in order to propagate the age model errors within wavelet power spectra. Results are consistents with a non-stationnary Holocene climate variability. The Halstatt cycles (2000-2500 years) depicted in many proxies (ACL, errestrial alkanes and SSTs) demonstrate solar activity influence in the north-western Mediterranean climate. Cluster analysis shows that pollen and ACL proxies, both indicating changes in aridity, are clearly distinct from other proxies and share significant common periodicities around 1000 and 600 years, since the mid-Holocene. The 1000 years period is also evidenced in terrestrial alkanes and Minorca sediment drift grain size, which respectively indicate changes in the Rhône hydrology and changes in the north-western Mediterranean deep water formation. These findings suggests that an original climate driver influences the Gulf of Lion area. Finally, both clay mineral content from PB06, indicative of past storminess and δ18O record from the north western Iberia, related to precipitations, record the well known 1500 years period since the middle Holocene. The presence of this period, widely encountered in the Atlantic, highlights the link between the north-western Mediterranean and the Atlantic climate variability.

Paleoenvironmental conditions at the loess paleosol sequence Bodrogkeresztúr in NE Hungary

NASA Astrophysics Data System (ADS)

Bösken, Janina; Obreht, Igor; Zeeden, Christian; Klasen, Nicole; Hambach, Ulrich; Sümegi, Pál; Lehmkuhl, Frank

2017-04-01

Loess paleosol sequences (LPS) have the ability to preserve past environmental and climatic conditions. Therefore, they are a widely used terrestrial archive for the reconstruction of paleoclimatic dynamics. In this study, we use several proxies (grain size distributions, geochemical analysis, rock magnetism, and color measurements) to study past environmental changes in a LPS covering the MIS 2/MIS 3 transition. Geochronological control is given by post infrared infrared stimulated luminescence dating of polymineral fine grains. The research aim lies in the reconstruction of the paleoenvironmental conditions at the loess-paleosol sequence Bodrogkeresztúr in northeastern Hungary using a multi-proxy approach. The sequence is located at the foot of the Kopasz hill, the southernmost part of the Tokaj Mountains, which belong to the Carpathian mountain range. The area is famous for the Bodrogkeresztúr-Henye Gravettian site (Lengyel, 2015). The profile contains eolian loess deposits intercalated by two paleosols. The lower paleosol overlays possibly fluvial clay (fine overbank deposits) forming the base of the profile. The luminescence samples have been tested thoroughly and have been measured with the pIR50IR290 protocol (Thiel et al., 2011). The final age assessment between 28.0±2.1 ka and 33.5±2.5 ka fits well to the established geochronologies of the Kopasz hill (Sümegi and Hertelendi, 1998) and the Tokaj section (Schatz et al., 2012). Paleoenvironmental conditions are investigated through the multi-proxy approach. The measurement of the anisotropy of magnetic susceptibility is interpreted in regard of paleowind directions. The magnetic susceptibility is enhanced in paleosols, especially in the lower one, indicating strong pedogenesis. Grain size parameters also show high clay contribution in the lower paleosol, but also indicate two distinct features of stronger wind dynamics in the loess layer in the middle of the profile (double sigmoidal fluctuations in all grain sizes), which is also visible in the color trends. Similarly, geochemical data indicate increased weathering in the lower paleosol. Accordingly, it can be deduced that MIS 3 was likely more humid at Bodrogkeresztúr in comparison to the inner parts of the Carpathian Basin. This underlines the assumption that Anatomically Modern Human migration followed the foothills of the Carpathians. References Lengyel, G., 2015. Lithic raw material procurement at Bodrogkeresztúr-Henye Gravettian site, northeast Hungary. Quat. Int. 359-360, 292-303. doi:10.1016/j.quaint.2014.07.027 Schatz, A.-K., Buylaert, J.-P., Murray, A., Stevens, T., Scholten, T., 2012. Establishing a luminescence chronology for a palaeosol-loess profile at Tokaj (Hungary): A comparison of quartz OSL and polymineral IRSL signals. Quat. Geochronol. 10, 68-74. Sümegi, P., Hertelendi, E., 1998. Reconstruction of microenvironmental changes in Kopasz Hill loess area at Tokaj (Hungary) between 15,000 - 70,000 BP years. Radiocarbon 40, 855-863. Thiel, C., Buylaert, J.-P., Murray, A., Terhorst, B., Hofer, I., Tsukamoto, S., Frechen, M., 2011. Luminescence dating of the Stratzing loess profile (Austria) - Testing the potential of an elevated temperature post-IR IRSL protocol. Quat. Int. 234, 23-31. doi:10.1016/j.quaint.2010.05.018

Cenozoic record of aeolian sediment accumulation and aridification from Lanzhou, China, driven by Tibetan Plateau uplift and global climate

NASA Astrophysics Data System (ADS)

Zhang, Yuebao; Sun, Donghuai; Li, Zaijun; Wang, Fei; Wang, Xin; Li, Baofeng; Guo, Feng; Wu, Sheng

2014-09-01

Previous work has shown that aeolian Red Clay first appears at around 8 Ma in the main Chinese Loess Plateau and at 25-22 Ma in the western Loess Plateau; however, records of aeolian deposition in the North Pacific suggest that aeolian accumulation occurred throughout the Cenozoic, and that changes in aeolian flux occurred in distinct stages. Tracing the Cenozoic aeolian history of the interior of the Asian continent may help us to understand the history of Asian aridification and its driving forces. In the Lanzhou area on the western margin of the Loess Plateau and the northeastern edge of the Tibetan Plateau, the Cenozoic stratigraphic sequence consists of fluvial-lacustrine sediments in the lower part, aeolian Red Clay with intercalated fluvial layers in the middle part, and predominantly aeolian loess in the upper part. We use high resolution paleomagnetic measurements of this sequence to construct a time scale, and measurements of sediment rock magnetic properties, grain-size, and color reflectance and sedimentary facies analysis to reconstruct the paleoenvironment. The results show that prior to 33 Ma the area was dominantly a fluvial-lacustrine environment, and that subsequently an aridification trend commenced, as indicated by the appearance of aeolian sediment. This change coincided with, and is thus explained as the environmental response to global cooling. A significant increase in aeolian sediments occurred at ~ 26 Ma, suggesting that a large scale arid environment had formed in the Asian interior since the late Oligocene. Stepwise increases of aeolian sediment, and decreases in sediments of hydraulic origin, occurred at ~ 22, ~ 14, ~ 8 and 2.6 Ma and represent important stages in the aridification process. This long-term trend was interrupted by intervals dominated by fluvial sedimentation at 23.6-22 Ma and 17.1-14.1 Ma and which were probably associated with warming of the global climate and the tectonic uplift of the northeastern Tibetan Plateau. Tectonic events occurring in Lanzhou at ~ 9-8 Ma and ~ 3.5 Ma indicate strong uplift of the northeastern Tibetan Plateau.

Discovery of multi-ring basins - Gestalt perception in planetary science

NASA Technical Reports Server (NTRS)

Hartmann, W. K.

1981-01-01

Early selenographers resolved individual structural components of multi-ring basin systems but missed the underlying large-scale multi-ring basin patterns. The recognition of multi-ring basins as a general class of planetary features can be divided into five steps. Gilbert (1893) took a first step in recognizing radial 'sculpture' around the Imbrium basin system. Several writers through the 1940's rediscovered the radial sculpture and extended this concept by describing concentric rings around several circular maria. Some reminiscences are given about the fourth step - discovery of the Orientale basin and other basin systems by rectified lunar photography at the University of Arizona in 1961-62. Multi-ring basins remained a lunar phenomenon until the fifth step - discovery of similar systems of features on other planets, such as Mars (1972), Mercury (1974), and possibly Callisto and Ganymede (1979). This sequence is an example of gestalt recognition whose implications for scientific research are discussed.

Experimental Study on the Interaction Between Contacting Barrier Materials for Containment of Radioactive Wastes

NASA Astrophysics Data System (ADS)

Huang, W. H.; Chang, H. C.

2017-12-01

The disposal of low- and intermediate-level radioactive wastes requires use of multi-barriers for isolation of the wastes from the biosphere. Typically, the engineered barriers are composed of a concrete vault, buffer and backfill materials. Zhishin clay and Black Hill bentonite were used as raw clay material in making buffer and backfill materials in this study. These clays were compacted to make buffer material, or mixed with Taitung area argillite to produce backfill material for potential application as barriers for the disposal of low- and intermediate-level radioactive wastes. The interaction between concrete barrier and the buffer/backfill material is simulated by an accelerated migration test to investigate the effect of contacting concrete on the expected functions of buffer/backfill material. The results show buffer material close to the contact with concrete exhibits significant change in the ratio of calcium/sodium exchange capacity, due to the move of calcium ions released from the concrete. The shorter the distance from the contacting interface, the ratio of the calcium/sodium concentration in buffer/backfill materials increases. The longer the distance from the interface, the effect of the contact on alteration in clays become less significant. Also, some decreases in swelling capacity in the buffer/backfill material near the concrete-backfill interface are noted. Finally, a comparison is made between Zhisin clay and Balck Hill bentonite on the interaction between concrete and the two clays. Black Hill bentonite was found to be influenced more by the interaction, because of the higher content of montmorillonite. On the other hand, being a mixture of clay and sand, backfill material is less affected by the decalsification of concrete at the contact than buffer material.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Liu, H.H.; Li, L.; Zheng, L.

Clay/shale has been considered as potential host rock for geological disposal of high-level radioactive waste throughout the world, because of its low permeability, low diffusion coefficient, high retention capacity for radionuclides, and capability to self-seal fractures. For example, Callovo-Oxfordian argillites at the Bure site, France (Fouche et al., 2004), Toarcian argillites at the Tournemire site, France (Patriarche et al., 2004), Opalinus Clay at the Mont Terri site, Switzerland (Meier et al., 2000), and Boom clay at the Mol site, Belgium (Barnichon and Volckaert, 2003) have all been under intensive scientific investigation (at both field and laboratory scales) for understanding amore » variety of rock properties and their relationships to flow and transport processes associated with geological disposal of radioactive waste. Figure 1-1 presents the distribution of clay/shale formations within the USA.« less

Progressive simplification and transmission of building polygons based on triangle meshes

NASA Astrophysics Data System (ADS)

Li, Hongsheng; Wang, Yingjie; Guo, Qingsheng; Han, Jiafu

2010-11-01

Digital earth is a virtual representation of our planet and a data integration platform which aims at harnessing multisource, multi-resolution, multi-format spatial data. This paper introduces a research framework integrating progressive cartographic generalization and transmission of vector data. The progressive cartographic generalization provides multiple resolution data from coarse to fine as key scales and increments between them which is not available in traditional generalization framework. Based on the progressive simplification algorithm, the building polygons are triangulated into meshes and encoded according to the simplification sequence of two basic operations, edge collapse and vertex split. The map data at key scales and encoded increments between them are stored in a multi-resolution file. As the client submits requests to the server, the coarsest map is transmitted first and then the increments. After data decoding and mesh refinement the building polygons with more details will be visualized. Progressive generalization and transmission of building polygons is demonstrated in the paper.

Flexible strain sensor based on carbon nanotube rubber composites

NASA Astrophysics Data System (ADS)

Kim, Jin-Ho; Kim, Young-Ju; Baek, Woon Kyung; Lim, Kwon Taek; Kang, Inpil

2010-04-01

Electrically conducting rubber composites (CRC) with carbon nanotubes (CNTs) filler have received much attention as potential materials for sensors. In this work, Ethylene propylene diene M-class rubber (EPDM)/CNT composites as a novel nano sensory material were prepared to develop flexible strain sensors that can measure large deformation of flexible structures. The EPDM/CNT composites were prepared by using a Brabender mixer with multi-walled CNTs and organo-clay. A strain sensor made of EPDM/CNT composite was attached to the surface of a flexible beam and change of resistance of the strain sensor was measured with respect to the beam deflection. Resistance of the sensor was change quite linearly under the bending and compressive large beam deflection. Upon external forces, CRC deformation takes place with the micro scale change of inter-electrical condition in rubber matrix due to the change of contact resistance, and CRC reveals macro scale piezoresistivity. It is anticipated that the CNT/EPDM fibrous strain sensor can be eligible to develop a biomimetic artificial neuron that can continuously sense deformation, pressure and shear force.

Accelerated gravity testing of aquitard core permeability and implications at formation and regional scale

NASA Astrophysics Data System (ADS)

Timms, W. A.; Crane, R.; Anderson, D. J.; Bouzalakos, S.; Whelan, M.; McGeeney, D.; Rahman, P. F.; Acworth, R. I.

2016-01-01

Evaluating the possibility of leakage through low-permeability geological strata is critically important for sustainable water supplies, the extraction of fuels from coal and other strata, and the confinement of waste within the earth. The current work demonstrates that relatively rapid and realistic vertical hydraulic conductivity (Kv) measurements of aquitard cores using accelerated gravity can constrain and compliment larger-scale assessments of hydraulic connectivity. Steady-state fluid velocity through a low-K porous sample is linearly related to accelerated gravity (g level) in a centrifuge permeameter (CP) unless consolidation or geochemical reactions occur. A CP module was custom designed to fit a standard 2 m diameter geotechnical centrifuge (550 g maximum) with a capacity for sample dimensions up to 100 mm diameter and 200 mm length, and a total stress of ˜ 2 MPa at the base of the core. Formation fluids were used as influent to limit any shrink-swell phenomena, which may alter the permeability. Kv results from CP testing of minimally disturbed cores from three sites within a clayey-silt formation varied from 10-10 to 10-7 m s-1 (number of samples, n = 18). Additional tests were focussed on the Cattle Lane (CL) site, where Kv within the 99 % confidence interval (n = 9) was 1.1 × 10-9 to 2.0 × 10-9 m s-1. These Kv results were very similar to an independent in situ Kv method based on pore pressure propagation though the sequence. However, there was less certainty at two other core sites due to limited and variable Kv data. Blind standard 1 g column tests underestimated Kv compared to CP and in situ Kv data, possibly due to deionised water interactions with clay, and were more time-consuming than CP tests. Our Kv results were compared with the set-up of a flow model for the region, and considered in the context of heterogeneity and preferential flow paths at site and formation scale. Reasonable assessments of leakage and solute transport through aquitards over multi-decadal timescales can be achieved by accelerated core testing together with complimentary hydrogeological monitoring, analysis, and modelling.

Arbitrary digital pulse sequence generator with delay-loop timing

NASA Astrophysics Data System (ADS)

Hošák, Radim; Ježek, Miroslav

2018-04-01

We propose an idea of an electronic multi-channel arbitrary digital sequence generator with temporal granularity equal to two clock cycles. We implement the generator with 32 channels using a low-cost ARM microcontroller and demonstrate its capability to produce temporal delays ranging from tens of nanoseconds to hundreds of seconds, with 24 ns timing granularity and linear scaling of delay with respect to the number of delay loop iterations. The generator is optionally synchronized with an external clock source to provide 100 ps jitter and overall sequence repeatability within the whole temporal range. The generator is fully programmable and able to produce digital sequences of high complexity. The concept of the generator can be implemented using different microcontrollers and applied for controlling of various optical, atomic, and nuclear physics measurement setups.

Beyond clay - using selective extractions to improve predictions of soil carbon content

NASA Astrophysics Data System (ADS)

Rasmussen, C.; Berhe, A. A.; Blankinship, J. C.; Crow, S. E.; Druhan, J. L.; Heckman, K. A.; Keiluweit, M.; Lawrence, C. R.; Marin-Spiotta, E.; Plante, A. F.; Schaedel, C.; Schimel, J.; Sierra, C. A.; Thompson, A.; Wagai, R.; Wieder, W. R.

2016-12-01

A central component of modern soil carbon (C) models is the use of clay content to scale the relative partitioning of decomposing plant material to respiration and mineral stabilized soil C. However, numerous pedon to plot scale studies indicate that other soil mineral parameters, such as Fe- or Al-oxyhydroxide content and specific surface area, may be more effective than clay alone for predicting soil C content and stabilization. Here we directly address the following question: Are there soil physicochemical parameters that represent mineral C association and soil C content that can replace or be used in conjunction with clay content as scalars in soil C models. We explored the relationship of soil C content to a number of soil physicochemical and physiographic parameters using the National Cooperative Soil Survey database that contains horizon level data for > 62,000 pedons spanning global ecoregions and geographic areas. The data indicated significant variation in the degree of correlation among soil C, clay and Fe-/Al-oxyhydroxides with increasing moisture variability. Specifically, dry, water-limited systems (PET/MAP > 1) presented strong positive correlations between clay and soil C, that decreased significantly to little or no correlation in wet, energy-limited systems (PET/MAP < 1). In contrast, the correlation of soil C to oxalate extractable Al+Fe increased significantly with increasing moisture availability. This pattern was particularly well expressed for subsurface B horizons. Multivariate analyses indicated similar patterns, with clear climate and ecosystem level variation in the degree of correlation among soil C and soil physicochemical properties. The results indicate a need to modify current soil C models to incorporate additional C partitioning parameters that better account for climate and ecoregion variability in C stabilization mechanisms.

Incorporation of bentonite clay in cassava starch films for the reduction of water vapor permeability.

PubMed

Monteiro, M K S; Oliveira, V R L; Santos, F K G; Barros Neto, E L; Leite, R H L; Aroucha, E M M; Silva, R R; Silva, K N O

2018-03-01

Complete factorial planning 2 3 was applied to identify the influence of the cassava starch(A), glycerol(B) and modified clay(C) content on the water vapor permeability(WVP) of the cassava starch films with the addition of bentonite clay as a filler, its surface was modified by ion exchange from cetyltrimethyl ammonium bromide. The films were characterized by X-ray diffraction(XRD), fourier transform by infrared radiation(FTIR), atomic force microscopy(AFM) and scanning electron microscopy(SEM). The factorial analysis suggested a mathematical model thats predicting the optimal condition of the minimization of WVP. The influence of each individual factor and interaction in the WVP was investigated by Pareto graph, response surface and the optimization was established by the desirability function. The sequence of the degree of statistical significance of the investigated effects on the WVP observed in the Pareto graph was C>B>A>BC>AC. Interactions AB, BC and AC showed that the modified clay was the factor of greater significance. Copyright © 2017 Elsevier Ltd. All rights reserved.

PREDICTING RELATIVE RISK OF INVASION BY SALTCEDAR AND MUD SNAILS IN RIVER NETWORKS UNDER DIFFERENT SCENARIOS OF CLIMATE CHANGE AND DAM OPERATIONS IN THE WESTERN UNITED STATES

EPA Science Inventory

This synthetic, multi-scale approach will generate a sequence of spatially explicit maps that will provide science guidance to support strategic decision-making regarding the spatially-distributed risk of, and possible adaptation to, the spread of invasive species at local to ...

Assessment study for multi-barrier system used in radioactive borate waste isolation based on Monte Carlo simulations.

PubMed

Bayoumi, T A; Reda, S M; Saleh, H M

2012-01-01

Radioactive waste generated from the nuclear applications should be properly isolated by a suitable containment system such as, multi-barrier container. The present study aims to evaluate the isolation capacity of a new multi-barrier container made from cement and clay and including borate waste materials. These wastes were spiked by (137)Cs and (60)Co radionuclides to simulate that waste generated from the primary cooling circuit of pressurized water reactors. Leaching of both radionuclides in ground water was followed and calculated during ten years. Monte Carlo (MCNP5) simulations computed the photon flux distribution of the multi-barrier container, including radioactive borate waste of specific activity 11.22KBq/g and 4.18KBq/g for (137)Cs and (60)Co, respectively, at different periods of 0, 15.1, 30.2 and 302 years. The average total flux for 100cm radius of spherical cell was 0.192photon/cm(2) at initial time and 2.73×10(-4)photon/cm(2) after 302 years. Maximum waste activity keeping the surface radiation dose within the permissible level was calculated and found to be 56KBq/g with attenuation factors of 0.73cm(-1) and 0.6cm(-1) for cement and clay, respectively. The average total flux was 1.37×10(-3)photon/cm(2) after 302 years. Monte Carlo simulations revealed that the proposed multi-barrier container is safe enough during transportation, evacuation or rearrangement in the disposal site for more than 300 years. Copyright © 2011 Elsevier Ltd. All rights reserved.

Characterization of Heat-treated Clay Minerals in the Context of Nuclear Waste Disposal

NASA Astrophysics Data System (ADS)

Matteo, E. N.; Wang, Y.; Kruichak, J. N.; Mills, M. M.

2015-12-01

Clay minerals are likely candidates to aid in nuclear waste isolation due to their low permeability, favorable swelling properties, and high cation sorption capacities. Establishing the thermal limit for clay minerals in a nuclear waste repository is a potentially important component of repository design, as flexibility of the heat load within the repository can have a major impact on the selection of repository design. For example, the thermal limit plays a critical role in the time that waste packages would need to cool before being transferred to the repository. Understanding the chemical and physical changes, if any, that occur in clay minerals at various temperatures above the current thermal limit (of 100 °C) can enable decision-makers with information critical to evaluating the potential trade-offs of increasing the thermal limit within the repository. Most critical is gaining understanding of how varying thermal conditions in the repository will impact radionuclide sorption and transport in clay materials either as engineered barriers or as disposal media. A variety of repository-relevant clay minerals (illite, mixed layer illite/smectite, and montmorillonite), were heated for a range of temperatures between 100-1000 °C. These samples were characterized to determine surface area, mineralogical alteration, and cation exchange capacity (CEC). Our results show that for conditions up to 500 °C, no significant change occurs, so long as the clay mineral remains mineralogically intact. At temperatures above 500 °C, transformation of the layered silicates into silica phases leads to alteration that impacts important clay characteristics. Sandia National Laboratories is a multi-program laboratory managed and operated by Sandia Corporation, a wholly owned subsidiary of Lockheed Martin Corporation, for the U.S. Department of Energy's Nation Nuclear Security Administration under contract DE-AC04-94AL85000. SAND Number: SAND2015-6524 A

23. RAILROAD, RR BRIDGE MISSISSIPPI, CLAY CO., WAVERLY 1.5 mi. ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

23. RAILROAD, RR BRIDGE MISSISSIPPI, CLAY CO., WAVERLY 1.5 mi. S of MS. 50 Southern R'wy Co. in Ms. Repairs to Tombigbee River Bridge' gears and turn machinery. DWG # S. 30303. Scale: 1-1/2' = l'. July 21, 1913. Credit: Columbus & Greenville RR, Columbus, Ms. Sarcone Photography, Columbus, Ms. Sep 1978. - Bridges of the Upper Tombigbee River Valley, Columbus, Lowndes County, MS

Rates and time scales of clay-mineral formation by weathering in saprolitic regoliths of the southern Appalachians from geochemical mass balance

Treesearch

Jason R. Price; Michael A. Velbel; Lina C. Patino

2005-01-01

Rates of clay formation in three watersheds located at the Coweeta Hydrologic Laboratory, western North Carolina, have been determined from solute flux-based mass balance methods. A system of mass balance equations with enough equations and unknowns to allow calculation of secondary mineral formation rates as well as the more commonly determined primary-...

Nonlinear Propagation of Sound in Recently Settled Flocculated Sediments

NASA Astrophysics Data System (ADS)

Reed, A. H.; Sanders, W. M.

2016-12-01

Cohesive sediments undergo changes in a whirlwind. Dumped out of the river and into the estuary, they get bathed in salty water and subject to turbulent motion. During this sequence of events, the clay particles form clay aggregates of larger size with higher settling rates than the clay particles. Once the flocs have settled, cohesive sediments may form a sediment deposit of mud. Our interest is in the factors that control the development of soundspeed within these muds. This paper addresses organic matter influences on floc aggregation and settling rates. In laboratory studies, organic matter type differed in mixtures with either bentonite or kaolinite clays. The organic matter types used were guar gum, a net positive biopolymer, and xanthan gum, a net negative biopolymer derived from bacterial exudates, similar to those commonly found in estuaries. These biopolymers were dissolved into low salinity water (0-10 ppt). The biopolymer mixture was degassed and during the degassing process, either bentonite or kaolinite clay was added to the vessel. Surprisingly, different settling rates occurred in the clay-biopolymer mixtures. The settling rates of the clay-guar mixtures was more rapid (1-2 days) than the settling rate for the clay-xanthan mixtures. While clay-guar consolidated further, clay-xanthan maintained consistency for more than 2 weeks with density slowly increasing during that period. Compressional soundspeed (Vp) measurements were made with depth through the vessel using 0.5 mHz piezoelectric transducers. It was found that Vp in water was similar to that of the clay-xanthan. Vp was the same in the upper 6 cm of mud as it was in the overlying water and Vp decreased to become slower with increasing depth. Compressional wave velocity (Vp) also changed slightly with the guar complexes below the sediment water interface to the depth of the vessel. Vp was slightly slower in the mud than in the water column. Vp of the water was 1480-1495 m/s whereas Vp within the clay-biopolymer was below the minimum Vp in the water column. This slight decrease in Vp with depth is consistent for that of naturally occurring surficial mud deposits. This work suggests that organic matter type can play a critical role in the rate of consolidation within a mud deposit, which has implications for mud strength development and transport potential.

Synthesis and electrorheological characteristics of polyaniline/organoclay nanoparticles via Pickering emulsion polymerization

NASA Astrophysics Data System (ADS)

Fang, F. F.; Liu, Y. D.; Choi, H. J.

2010-12-01

Conducting polymer/inorganic composite particles have been regarded as a potential candidate material for electrorheological (ER) fluids when dispersed in non-conducting oils due to their synergistic physical properties such as enhanced thermal stability and high dielectric properties. In this study, we fabricated polyaniline (PANI)/clay nanoparticles with unique core-shell structure via Pickering emulsion in the phase of toluene by adopting exfoliated clay as a stabilizer. Successfully synthesized PANI nanospheres which were initialized by oil-soluble benzoyl peroxide possess a polydispersed size distribution of particles ranging from 200 nm to 1 µm. Surface morphology was revealed by SEM images in which some clay sheets were found to wrap the PANI nanoparticles compactly. TEM images explicitly confirm the position of exfoliated clay layers around the nanospheres. In addition, some nano-scaled particles showed an irregular shape because clay plates are difficult to bend while wrapping the very tiny PANI nanoparticles, so the x-ray diffraction (XRD) pattern did not indicate any obvious sharp peak, demonstrating the nearly completely exfoliated clay layers. Besides these, thermal gravimetric analysis (TGA) data also gave additional information on thermal stability and composition. Finally, the ER fluid was prepared by dispersing PANI/clay nanoparticles in silicone oil and the ER performance was investigated via a rotational rheometer under an applied electric field.

Aqueous mineralogy and stratigraphy at and around the proposed Mawrth Vallis MSL Landing Site: New insights into the aqueous history of the region

USGS Publications Warehouse

Dobrea, Eldar Z. Noe; Michalski, Joseph; Swayze, Gregg

2011-01-01

In this work, we have confirmed the mineralogical stratigraphy previously inferred by other authors, but also demonstrate the presence of additional minerals, including a possible acid-leaching product near the top of the sequence, an Mh-OH bearing phyllosilicate at the to of the sequence, and potentially a Ca-sulfate at the bottom of the phyllosilicate sequence. The latter has important implications regarding the relative timing of sulfate vs clay formation on Mars.

Multipoint to multipoint routing and wavelength assignment in multi-domain optical networks

NASA Astrophysics Data System (ADS)

Qin, Panke; Wu, Jingru; Li, Xudong; Tang, Yongli

2018-01-01

In multi-point to multi-point (MP2MP) routing and wavelength assignment (RWA) problems, researchers usually assume the optical networks to be a single domain. However, the optical networks develop toward to multi-domain and larger scale in practice. In this context, multi-core shared tree (MST)-based MP2MP RWA are introduced problems including optimal multicast domain sequence selection, core nodes belonging in which domains and so on. In this letter, we focus on MST-based MP2MP RWA problems in multi-domain optical networks, mixed integer linear programming (MILP) formulations to optimally construct MP2MP multicast trees is presented. A heuristic algorithm base on network virtualization and weighted clustering algorithm (NV-WCA) is proposed. Simulation results show that, under different traffic patterns, the proposed algorithm achieves significant improvement on network resources occupation and multicast trees setup latency in contrast with the conventional algorithms which were proposed base on a single domain network environment.

Improved Yield of High Molecular Weight DNA Coincides with Increased Microbial Diversity Access from Iron Oxide Cemented Sub-Surface Clay Environments

DOE PAGES

Hurt, Jr., Richard A.; Robeson II, Michael S.; Shakya, Migun; ...

2014-07-14

Despite more than three decades of progress, efficient nucleic acid extraction from microbial communities has remained difficult, particularly from clay environments. Lysis with concentrated guanidine followed by concentrated sodium phosphate extraction supported DNA and RNA recovery from high iron, low humus content clay. Alterating the extraction pH or using other ionic solutions (Na 2SO 4 and NH 4H 2PO 4) yielded no detectable nucleic acid. DNA recovered using a lysis solution with 500 mM phosphate buffer (PB) followed by a 1 M PB wash was 15.22±2.33 g DNA/g clay, with most DNA consisting of >20 Kb fragments, compared to 2.46±0.25more » g DNA/g clay with the Powerlyzer soil DNA system (MoBio). Increasing [PB] in the lysis reagent coincided with increasing DNA fragment length. Rarefaction plots based on16S rRNA (V1/V3 region) pyrosequencing libraries from A-horizon and clay soils showed an ~80% and ~400% larger accessed diversity compared to a previous grinding protocol or the Powerlyzer soil DNA system, respectively. The observed diversity from the Firmicutes showed the strongest increase with >3-fold more bacterial species recovered using this system. Additionally, some OTU's having more than 100 sequences in these libraries were absent in samples extracted using the PowerLyzer reagents or the previous lysis method.« less

Improved Yield of High Molecular Weight DNA Coincides with Increased Microbial Diversity Access from Iron Oxide Cemented Sub-Surface Clay Environments

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hurt, Jr., Richard A.; Robeson II, Michael S.; Shakya, Migun

Despite more than three decades of progress, efficient nucleic acid extraction from microbial communities has remained difficult, particularly from clay environments. Lysis with concentrated guanidine followed by concentrated sodium phosphate extraction supported DNA and RNA recovery from high iron, low humus content clay. Alterating the extraction pH or using other ionic solutions (Na 2SO 4 and NH 4H 2PO 4) yielded no detectable nucleic acid. DNA recovered using a lysis solution with 500 mM phosphate buffer (PB) followed by a 1 M PB wash was 15.22±2.33 g DNA/g clay, with most DNA consisting of >20 Kb fragments, compared to 2.46±0.25more » g DNA/g clay with the Powerlyzer soil DNA system (MoBio). Increasing [PB] in the lysis reagent coincided with increasing DNA fragment length. Rarefaction plots based on16S rRNA (V1/V3 region) pyrosequencing libraries from A-horizon and clay soils showed an ~80% and ~400% larger accessed diversity compared to a previous grinding protocol or the Powerlyzer soil DNA system, respectively. The observed diversity from the Firmicutes showed the strongest increase with >3-fold more bacterial species recovered using this system. Additionally, some OTU's having more than 100 sequences in these libraries were absent in samples extracted using the PowerLyzer reagents or the previous lysis method.« less

Diagenetic contrast of sandstones in hydrocarbon prospective Mesozoic rift basins (Ethiopia, UK, USA)

NASA Astrophysics Data System (ADS)

Wolela, A.

2014-11-01

Diagenetic studied in hydrocarbon-prospective Mesozoic rift basins were carried out in the Blue Nile Basin (Ethiopia), Ulster Basin (United Kingdom) and Hartford Basin (United States of America). Alluvial fan, single and amalgamated multistorey meandering and braided river, deep and shallow perennial lake, shallow ephemeral lake, aeolian and playa mud-flat are the prominent depositional environments. The studied sandstones exhibit red bed diagenesis. Source area geology, depositional environments, pore-water chemistry and circulation, tectonic setting and burial history controlled the diagenetic evolution. The diagenetic minerals include: facies-related minerals (calcrete and dolocrete), grain-coating clay minerals and/or hematite, quartz and feldspar overgrowths, carbonate cements, hematite, kaolinite, illite-smectite, smectite, illite, chlorite, actinolite, laumontite, pyrite and apatite. Diversity of diagenetic minerals and sequence of diagenetic alteration can be directly related to depositional environment and burial history of the basins. Variation in infiltrated clays, carbonate cements and clay minerals observed in the studied sandstones. The alluvial fan and fluviatile sandstones are dominated by kaolinite, illite calcite and ferroan calcite, whereas the playa and lacustrine sandstones are dominated by illite-smectite, smectite-chlorite, smectite, chlorite, dolomite ferroan dolomite and ankerite. Albite, pyrite and apatite are predominantly precipitated in lacustrine sandstones. Basaltic eruption in the basins modified mechanically infiltrated clays to authigenic clays. In all the studied sandstones, secondary porosity predominates over primary porosity. The oil emplacement inhabited clay authigenesis and generation of secondary porosity, whereas authigenesis of quartz, pyrite and apatite continued after oil emplacement.

Mapping Acid Sulfate Alteration of Basaltic Andesite with Thermal Infrared Data

NASA Technical Reports Server (NTRS)

Vaughan, R. G.; Calvin, W. M.; Hook, S. J.; Taranik, J. V.

2002-01-01

Airborne thermal infrared multi- and hyperspectral data sets are used to map sulfate alteration of basaltic andesites near Reno, NV. Alteration includes quartz-alunite, jarosite and a number of clay minerals such as kaolinite and montmorillonite. Additional information is contained in the original extended abstract.

Fractional calculus applied to the analysis of spectral electrical conductivity of clay-water system.

PubMed

Korosak, Dean; Cvikl, Bruno; Kramer, Janja; Jecl, Renata; Prapotnik, Anita

2007-06-16

The analysis of the low-frequency conductivity spectra of the clay-water mixtures is presented. The frequency dependence of the conductivity is shown to follow the power-law with the exponent n=0.67 before reaching the frequency-independent part. When scaled with the value of the frequency-independent part of the spectrum the conductivity spectra for samples at different water content values are shown to fit to a single master curve. It is argued that the observed conductivity dispersion is a consequence of the anomalously diffusing ions in the clay-water system. The fractional Langevin equation is then used to describe the stochastic dynamics of the single ion. The results indicate that the experimentally observed dielectric properties originate in anomalous ion transport in clay-water system characterized with time-dependent diffusion coefficient.

Effects of Staggering Formation Maneuvers on the Magnetospheric Multi-Scale Mission Trajectories

NASA Technical Reports Server (NTRS)

Parsay, Khashayar; Mann, Laurie

2012-01-01

Formation maneuvering for the MMS mission is accomplished by executing a two-burn transfer for each spacecraft to achieve a set of desired states. Because the same radio frequency is shared by all four spacecraft, only one spacecraft can execute a maneuver at any given time. Therefore, the maneuver execution epochs for the MMS spacecraft must be staggered. The selection of the staggered maneuver sequence has a significant effect on the propellant usage and the spacecraft close-approach profile. A method for selecting a favorable maneuver sequence is proposed and measured in terms of propellant and safety.

Overview of the evolution of clay mineralogy in the Gulf of Mexico: implications for regional climate and drainage history of the Mississippi and Brazos-Trinity Rivers

NASA Astrophysics Data System (ADS)

Adatte, T.; John, C. M.; Flemings, P. B.; Behrmann, J.

2005-12-01

In this paper we present the overview and preliminary results of the analysis of clay minerals in two mini basins drilled during IODP Expedition 308. The goal of our project is to explore the vertical and temporal trends in clay mineralogy in the Ursa Basin and the Brazos-Trinity basin #4. The Brazos-Trinity basin was the sink for sands and clays carried by the Brazos and Trinity Rivers, while the Ursa basin was the sink for sediments carried by the Mississippi river. Reconstructing clay minerals (phyllosilicates <2μm in size) accumulations at these locations could thus potentially yield information on changes in the transport and the source of the siliclastic material transported in the course of the Pleistocene by these three rivers. Moreover, because the type of clay formed in soils through weathering processes largely depend on temperature and amount of precipitation, the dataset generated could provide clues on past climate changes. Some of the mechanisms that are hypothesized to play a major role in controlling clay accumulation in the basins investigated are reworking of clays on the American continent (controlled at the time-scale investigated here by changes in precipitation) and turbidity current deposition (controlled mainly by sea-level changes and thus glacio-eustasy). Finally, a major focusing point of Expedition 308 was sediment physical properties in an overpressured basin. Because each clay mineral specie has a specific average grain sizes, physical properties and cation exchange capacity, the clay mineral composition of the sediment investigated here (dominated by clay-sized particles) may partly control how these sediments react to changes in pressure and temperature. Thus, clay mineral data could contribute to our understanding of the physical properties of the sediments in overpressured basins, and collaborations with geotechnical scientist are planned.

Hillslope Chromatography in Savannas

NASA Astrophysics Data System (ADS)

Hartshorn, A.; Khomo, L.; Chadwick, O.; Rogers, K.; Kurtz, A.; Heimsath, A.

2005-12-01

In semiarid ecosystems, vegetation patterns are controlled in part by soil water availability. Along hillslopes in Kruger National Park, South Africa, water availability is strongly dependent on soil texture and textural differences with depth, which are a function of landscape position (convergent or divergent crests, midslopes, and footslopes) and parent material. We are studying weathering and landscape development on the western side of the park, which is underlain by granitic gneisses. Hillslopes in the park are often described as catenas, where rainfall catalyzes chemical weathering and drives the downslope transport of clays and weathering products, forming a predictable sequence of soil types. Sandy crest soils grade to midslope soils where sandy surface horizons overlie clayey subsurface horizons; footslopes generally have higher volumetric clay contents. The boundary between the sandy and clayey soils is of ecological significance because this is the location where run-on from upslope landscape positions is diverted to the surface, initiating overland flow and reducing infiltration. In a geochemical sense these hillslopes can be thought of as chromatographic columns that accentuate differential solute mobility along the long (~1-2 km) potential flowpaths. We use the compound topographic index (a terrain attribute that indexes soil wetness by dividing the upslope contributing area by the slope) to predict the redistribution of clays across these semiarid hillslopes and hope to demonstrate that landscape positions occupying comparable plan and profile curvatures contain clay and organic carbon in proportion to contributing area. Thus far, we have derived contributing area values for 40 soil pits using LiDAR-based digital elevation models and then tested how well contributing area and other terrain attributes predicted clay and carbon content for 218 horizons at these 40 locations. Depth-weighted soil clay ranged from 3 to 25% and total soil carbon ranged from 0.1 to 2.1%. Our preliminary results suggest that greater contributing area only produces greater soil clay content up to a threshold clay content, after which clay illuviation and in situ clay production slows following the diversion of water to the surface.

Fraction distribution and risk assessment of heavy metals in waste clay sediment discharged through the phosphate beneficiation process in Jordan.

PubMed

Al-Hwaiti, Mohammad Salem; Brumsack, Hans Jurgen; Schnetger, Bernhard

2015-07-01

Heavy metal contamination of clay waste through the phosphate beneficiation process is a serious problem faced by scientists and regulators worldwide. Through the beneficiation process, heavy metals naturally present in the phosphate rocks became concentrated in the clay waste. This study evaluated the concentration of heavy metals and their fractions in the clay waste in order to assess the risk of environmental contamination. A five-step sequential extraction method, the risk assessment code (RAC), effects range low (ERL), effects range medium (ERM), the lowest effect level (LEL), the severe effect level (SEL), the redistribution index (U tf), the reduced partition index (I), residual partition index (I R), and the Nemerow multi-factor index (PC) were used to assess for clay waste contamination. Heavy metals were analyzed using high-resolution inductively coupled plasma mass spectrometry (HR-ICP-MS) and inductively coupled plasma optical emission spectroscopy (ICP-OES). Correlation analyses were carried out to better understand the relationships between the chemical characteristics and the contents of the different phase fractions. Concentrations of Cd and Cu confirmed that both were bound to the exchangeable fraction (F1) and the carbonate fraction (F2), presenting higher mobility, whereas Pb was most abundant in the Fe-Mn oxide fraction (F3) and organic matter fraction (F4). The residual fraction (F5) contained the highest concentrations (>60%) of As, Cr, Mo, V, and Zn, with lower mobility. Application of the RAC index showed that Cd and Cu should be considered a moderate risk, whereas As, Cr, Mo, Pb, and Zn presented a low risk. Cadmium and Cu contents in mobile fractions F1 and F2 were higher than ERL but lower than ERM. On the other hand, As, Pb, and Zn contents of mobile fractions F1 and F2 were lower than ERL and ERM guideline values. Moreover, total Pb concentrations in the clay waste were below the lowest effect level (LEL) threshold value period, Cr and Zn values in the clay waste were determined to have exceeded the severe effect level (SEL) limit values, whereas Cd and Cu level ranges between LEL and SEL indicate moderate contamination. I R values of heavy metals in the clay waste confirmed that Cd and Cu were bound to the exchangeable and carbonate fractions and presented higher mobility, whereas As, Cr, Mo, Pb, V, and Zn were bound to organic or residual fractions and consequently exhibit lower mobility. A Nemerow multi-factor index revealed that the mine site contains high levels of Cd, Cu, V, and Zn pollution. As and Cr were found at a moderate level of contamination, whereas Pb was present at a safe level of contamination. The order of the comprehensive contamination indices was Cd > Cu > Mo > Zn > V > Cr > As > Pb, indicating that the assessment of clay waste, especially with Cd and Cu, should be undertaken to control heavy metal contamination in adjacent urban and mine areas at the Eshidiya mines.

Synthesis of Joint Volumes, Visualization of Paths, and Revision of Viewing Sequences in a Multi-dimensional Seismic Data Viewer

NASA Astrophysics Data System (ADS)

Chen, D. M.; Clapp, R. G.; Biondi, B.

2006-12-01

Ricksep is a freely-available interactive viewer for multi-dimensional data sets. The viewer is very useful for simultaneous display of multiple data sets from different viewing angles, animation of movement along a path through the data space, and selection of local regions for data processing and information extraction. Several new viewing features are added to enhance the program's functionality in the following three aspects. First, two new data synthesis algorithms are created to adaptively combine information from a data set with mostly high-frequency content, such as seismic data, and another data set with mainly low-frequency content, such as velocity data. Using the algorithms, these two data sets can be synthesized into a single data set which resembles the high-frequency data set on a local scale and at the same time resembles the low- frequency data set on a larger scale. As a result, the originally separated high and low-frequency details can now be more accurately and conveniently studied together. Second, a projection algorithm is developed to display paths through the data space. Paths are geophysically important because they represent wells into the ground. Two difficulties often associated with tracking paths are that they normally cannot be seen clearly inside multi-dimensional spaces and depth information is lost along the direction of projection when ordinary projection techniques are used. The new algorithm projects samples along the path in three orthogonal directions and effectively restores important depth information by using variable projection parameters which are functions of the distance away from the path. Multiple paths in the data space can be generated using different character symbols as positional markers, and users can easily create, modify, and view paths in real time. Third, a viewing history list is implemented which enables Ricksep's users to create, edit and save a recipe for the sequence of viewing states. Then, the recipe can be loaded into an active Ricksep session, after which the user can navigate to any state in the sequence and modify the sequence from that state. Typical uses of this feature are undoing and redoing viewing commands and animating a sequence of viewing states. The theoretical discussion are carried out and several examples using real seismic data are provided to show how these new Ricksep features provide more convenient, accurate ways to manipulate multi-dimensional data sets.

Nanomechanical modeling of interfaces of polyvinyl alcohol (PVA)/clay nanocomposite

NASA Astrophysics Data System (ADS)

Paliwal, Bhasker; Lawrimore, William B.; Chandler, Mei Q.; Horstemeyer, Mark F.

2017-05-01

We study interfacial debonding of several representative structures of polyvinyl alcohol (PVA)/pyrophillite-clay systems - both gallery-interface (polymer/clay interface in the interlayer region containing polymer between clay layers stacked parallel to each other) and matrix-interphase (polymer/clay interphase-region when individual clay layers are well separated and dispersed in the polymer matrix) - using molecular dynamics simulations, while explicitly accounting for shearing/sliding (i.e. Mode-II) deformation mode. Ten nanocomposite geometries (five 2-D periodic structures for tension and five 1-D periodic structures for shearing) were constructed to quantify the structure-property relations by varying the number density of polymer chains, length of polymer chains and model dimensions related to the interface deformation. The results were subsequently mapped into a cohesive traction-separation law, including evaluation of peak traction and work of separation that are used to characterise the interface load transfer for larger length scale micromechanical models. Results suggest that under a crack nucleation opening mode (i.e. Mode-I), the matrix-interphase exhibits noticeably greater strength and a greater work of separation compared to the gallery-interface; however, they were similar under the shearing/sliding mode of deformation. When compared to shearing/sliding, the tensile peak opening mode stresses were considerably greater but the displacement at the peak stress, the displacement at the final failure and the work of separation were considerably lower. Results also suggest that PVA/clay nanocomposites with higher degree of exfoliation compared with nanocomposites with higher clay-intercalation can potentially display higher strength under tension-dominated loading for a given clay volume fraction.

Widespread Surface Weathering on Early Mars: possible implication on the Past Climate

NASA Astrophysics Data System (ADS)

Loizeau, Damien; Carter, John; Mangold, Nicolas; Poulet, François; Rossi, Angelo P.; Allemand, Pascal; Lozac'h, Loïc; Quantin, Cathy; Bibring, Jean-Pierre

2015-04-01

The recent discovery of widespread hydrous clays on Mars with OMEGA/Mars Express and CRISM/MRO indicates that diverse and widespread aqueous environments existed on Mars, from the surface to kilometric depths [1, 2]. The study of the past habitability and past climates of the planet requires assessing the importance of sustained surface water vs. subsurface water in its aqueous history. Vertical sequences of Al-rich clays on top of Fe/Mg-rich clays in the top tens of meters of the surface are identified on Mars [3-6] (see figure 1) and interpreted as possible weathering profiles, similar to cases of pedogenesis on Earth (e.g. [7, 8]). A global study of these clay sequences has recently been published by Carter et al. [9]. This following work presents detailed geological analysis, performed for each identified candidate, in order to constrain their age and origin. With the increasing availability of CTX and HiRISE stereoimages, we investigate the thickness of the altered sequences, the age of the altered units and the different geological contexts to further understand the weathering process(es), and their possible implication on the past climate. The types of geologic settings where the interpreted weathering profiles are observed are much varied: from basin floor to plateaus, in apparent massive rocks to finely layered rocks. Besides, the number and variety of sequences is/was likely larger. However, in term of chronology, the alteration seems to have stopped in a relatively limited period of time for the studied cases, between 3.8 and 3.6 Ga. This would point to a formation due to a global process that enabled liquid water at the surface and pedogenesis in various regions, on various terrains, from late Noachian to early Hesperian. This global process would imply regular, widely distributed ice or precipitations in large regions of Mars at that time. If weathering occurred before that time, during the early or middle Noachian, the sequences may have been erased by the more intense erosion of that time. Also, it is difficult to date older terrains by crater counting on small surfaces. These observations make a strong constrain concerning the past habitability of Mars: liquid water has been widely available at the surface of the planet, in contact with different rocks, until the early Hesperian time. Acknowledgment: Some of the authors have received funding from the ERC (FP7/2007-2013)/ERC Grant agreement n° 280168. References: [1] Ehlmann B., et al. Nature, 479, 53-60 (2011). [2] Carter J., et al. JGR, 118, 831-858 (2013) [3] Gaudin A., et al. Icarus, 216(1), 257-268 (2011). [4] Loizeau D., et al. Icarus, 205, 396-418 (2010). [5] Noe Dobrea E., et al. JGR, 115, E00D19 (2010). [6] Le Deit L., et al. JGR, 117, E00J05 (2012). [7] Velde B., et al. Ed. Springer, Berlin, (1995). [8] Wilson M. Clay Minerals, 39, 233-266 (2004). [9] Carter J., et al. Icarus, 248, 373-382.

An investigation into preserving spatially-distinct pore systems in multi-component rocks using a fossiliferous limestone example

NASA Astrophysics Data System (ADS)

Jiang, Zeyun; Couples, Gary D.; Lewis, Helen; Mangione, Alessandro

2018-07-01

Limestones containing abundant disc-shaped fossil Nummulites can form significant hydrocarbon reservoirs but they have a distinctly heterogeneous distribution of pore shapes, sizes and connectivities, which make it particularly difficult to calculate petrophysical properties and consequent flow outcomes. The severity of the problem rests on the wide length-scale range from the millimetre scale of the fossil's pore space to the micron scale of rock matrix pores. This work develops a technique to incorporate multi-scale void systems into a pore network, which is used to calculate the petrophysical properties for subsequent flow simulations at different stages in the limestone's petrophysical evolution. While rock pore size, shape and connectivity can be determined, with varying levels of fidelity, using techniques such as X-ray computed tomography (CT) or scanning electron microscopy (SEM), this work represents a more challenging class where the rock of interest is insufficiently sampled or, as here, has been overprinted by extensive chemical diagenesis. The main challenge is integrating multi-scale void structures derived from both SEM and CT images, into a single model or a pore-scale network while still honouring the nature of the connections across these length scales. Pore network flow simulations are used to illustrate the technique but of equal importance, to demonstrate how supportable earlier-stage petrophysical property distributions can be used to assess the viability of several potential geological event sequences. The results of our flow simulations on generated models highlight the requirement for correct determination of the dominant pore scales (one plus of nm, μm, mm, cm), the spatial correlation and the cross-scale connections.

Effects of Freezing and Thawing on Consolidation Behavior of Clayey Soils

NASA Astrophysics Data System (ADS)

Binal, Adil; Adeli, Parisa

2015-04-01

An apprehending of freezing and thawing effects on cohesive soil is considerable for many construction and environmental subjects. This paper relates the effects of freezing and thawing on consolidation behaviour of clayey soils. The Capital of Ankara settled on a sequence of lacustrine sediments. These sediments include fine grain soils, locally. Collected samples were undisturbed grey clay and clayey sand that were obtained from the bottom of a construction zone at about 1m depth below the ground surface. Total of 32 moulded samples were prepared with constant water content to reflect the moisture condition in the active surface layer. Gray clay and clayey sand were analysed in the laboratory, and found to have the plastic limits (PL) of 33.01% and 22.56%, the liquid limits (LL) of 75.05% and 36.97%, and the plasticity indexes (PI) of 42.04% and 14.41%. The soil samples were classified as "CH" and "SC" in accordance with the unified soil classification system. Soil samples for all tests were placed in a freezer that has -18°C temperature. Samples have been waited in it for twenty-four hours. Then, they have been removed from the freezer and allowed to stand for twenty-four hours at a constant room temperature (21°C) and humidity (80% RH). As a result, one freezing and thawing cycle was achieved between -18°C (24 hours) and 21°C (24 hours), and it took two days. Freezing and thawing (FT) sequences were selected as 1, 3, 7, 14 and 21. After each FT sequence, Atterberg limits and consolidation tests were carried out in accordance with ASTM standards. Liquid and plastic limits of soil samples, suddenly, were decreased after first FT cycle. That state is a sign of the clay mineral orientation due to freezing and thawing process. The soil classification of clayey sand was changed from "SC" to "SM" after first FT cycle. Furthermore, the coefficient of consolidation and permeability of grey clay had been increased by rising in FT cycles up to 7 and then continue to decline as well as these values of clayey sand start to decrease after 14 FT cycles.

Numerical Analysis of Helical Pile-Soil Interaction under Compressive Loads

NASA Astrophysics Data System (ADS)

Polishchuk, A. I.; Maksimov, F. A.

2017-11-01

The results of the field tests of full-scale steel helical piles in clay soils intended for prefabricated temporary buildings foundations are presented in this article. The finite element modeling was used for the evaluation of stress distribution of the clay soil around helical piles. An approach of modeling of the screw-pile geometry has been proposed through the Finite Element Analysis. Steel helical piles with a length of 2.0 m, shaft diameter of 0.108 m and a blade diameter of 0.3 m were used in the experiments. The experiments have shown the efficiency of double-bladed helical piles in the clay soils compared to single-bladed piles. It has been experimentally established that the introduction of the second blade into the pile shaft provides an increase of the bearing capacity in clay soil up to 30% compared to a single-bladed helical pile with similar geometrical dimensions. The numerical results are compared with the measurements obtained by a large scale test and the bearing capacity has been estimated. It has been found that the model results fit the field results. For a double-bladed helical pile it was revealed that shear stresses upon pile loading are formed along the lateral surface forming a cylindrical failure surface.

Efficiency of a multi-soil-layering system on wastewater treatment using environment-friendly filter materials.

PubMed

Ho, Chia-Chun; Wang, Pei-Hao

2015-03-23

The multi-soil-layering (MSL) system primarily comprises two parts, specifically, the soil mixture layer (SML) and the permeable layer (PL). In Japan, zeolite is typically used as the permeable layer material. In the present study, zeolite was substituted with comparatively cheaper and more environmentally friendly materials, such as expanded clay aggregates, oyster shells, and already-used granular activated carbon collected from water purification plants. A series of indoor tests indicated that the suspended solid (SS) removal efficiency of granular activated carbon was between 76.2% and 94.6%; zeolite and expanded clay aggregates achieved similar efficiencies that were between 53.7% and 87.4%, and oyster shells presented the lowest efficiency that was between 29.8% and 61.8%. Further results show that the oyster shell system required an increase of wastewater retention time by 2 to 4 times that of the zeolite system to maintain similar chemical oxygen demand (COD) removal efficiency. Among the four MSL samples, the zeolite system and granular activated carbon system demonstrated a stable NH3-N removal performance at 92.3%-99.8%. The expanded clay aggregate system present lower removal performance because of its low adsorption capacity and excessively large pores, causing NO3--N to be leached away under high hydraulic loading rate conditions. The total phosphorous (TP) removal efficiency of the MSL systems demonstrated no direct correlation with the permeable layer material. Therefore, all MSL samples achieved a TP efficiency of between 92.1% and 99.2%.

Heavy metal pollution decreases microbial abundance, diversity and activity within particle-size fractions of a paddy soil.

PubMed

Chen, Junhui; He, Feng; Zhang, Xuhui; Sun, Xuan; Zheng, Jufeng; Zheng, Jinwei

2014-01-01

Chemical and microbial characterisations of particle-size fractions (PSFs) from a rice paddy soil subjected to long-term heavy metal pollution (P) and nonpolluted (NP) soil were performed to investigate whether the distribution of heavy metals (Cd, Cu, Pb and Zn) regulates microbial community activity, abundance and diversity at the microenvironment scale. The soils were physically fractionated into coarse sand, fine sand, silt and clay fractions. Long-term heavy metal pollution notably decreased soil basal respiration (a measurement of the total activity of the soil microbial community) and microbial biomass carbon (MBC) across the fractions by 3-45% and 21-53%, respectively. The coarse sand fraction was more affected by pollution than the clay fraction and displayed a significantly lower MBC content and respiration and dehydrogenase activity compared with the nonpolluted soils. The abundances and diversities of bacteria were less affected within the PSFs under pollution. However, significant decreases in the abundances and diversities of fungi were noted, which may have strongly contributed to the decrease in MBC. Sequencing of denaturing gradient gel electrophoresis bands revealed that the groups Acidobacteria, Ascomycota and Chytridiomycota were clearly inhibited under pollution. Our findings suggest that long-term heavy metal pollution decreased the microbial biomass, activity and diversity in PSFs, particularly in the large-size fractions. © 2013 Federation of European Microbiological Societies. Published by John Wiley & Sons Ltd. All rights reserved.

Darkness after the K-T impact: Effects of soot

NASA Technical Reports Server (NTRS)

Wolbach, Wendy S.; Anders, Edward; Orth, Charles J.

1988-01-01

Dust from the K-T impact apparently settled from the atmosphere in less than 6 months, restoring sunlight to minimum photosynthesis levels in about 4 months. However, the discovery of a global soot component in the boundary clay makes it necessary to reconsider the problem, as soot particles not only are smaller (0.1 vs. about 0.5 micrometer) and thus settle more slowly, but also are better light absorbers (optical depth of 13 mg soot cm(-2) about 1800; and are more resistant to rainout. Still, the darkness cannot have lasted very much longer than 6 months, else no larger animals would have survived. Perhaps the soot coagulated with the rock dust and fell out with it. Evidence on this point may be sought at a relatively undisturbed K-T boundary site, such as Woodside Creek, N.Z. There the boundary clay and lowermost Tertiary strata are finely laminated and show large chemical and isotopic differences on a millimeter scale, apparently representing a detailed time sequence. Researchers studied a 3 m section across the boundary at this site, analyzing the principal forms of carbon (soot, elemental C, kerogen, and carbonate) as well as 33 elements. Correlations among the elements were sought. Apparently soot came early and coagulated with the ejecta, staying with them for the primary fallout and in the next 5 cm, but then parting company, perhaps due to size sorting.

Impacts on Water Management and Crop Production of Regional Cropping System Adaptation to Climate Change

NASA Astrophysics Data System (ADS)

Zhong, H.; Sun, L.; Tian, Z.; Liang, Z.; Fischer, G.

2014-12-01

China is one of the most populous and fast developing countries, also faces a great pressure on grain production and food security. Multi-cropping system is widely applied in China to fully utilize agro-climatic resources and increase land productivity. As the heat resource keep improving under climate warming, multi-cropping system will also shifting northward, and benefit crop production. But water shortage in North China Plain will constrain the adoption of new multi-cropping system. Effectiveness of multi-cropping system adaptation to climate change will greatly depend on future hydrological change and agriculture water management. So it is necessary to quantitatively express the water demand of different multi-cropping systems under climate change. In this paper, we proposed an integrated climate-cropping system-crops adaptation framework, and specifically focused on: 1) precipitation and hydrological change under future climate change in China; 2) the best multi-cropping system and correspondent crop rotation sequence, and water demand under future agro-climatic resources; 3) attainable crop production with water constraint; and 4) future water management. In order to obtain climate projection and precipitation distribution, global climate change scenario from HADCAM3 is downscaled with regional climate model (PRECIS), historical climate data (1960-1990) was interpolated from more than 700 meteorological observation stations. The regional Agro-ecological Zone (AEZ) model is applied to simulate the best multi-cropping system and crop rotation sequence under projected climate change scenario. Finally, we use the site process-based DSSAT model to estimate attainable crop production and the water deficiency. Our findings indicate that annual land productivity may increase and China can gain benefit from climate change if multi-cropping system would be adopted. This study provides a macro-scale view of agriculture adaptation, and gives suggestions to national agriculture adaptation strategy decisions.

DeepGO: predicting protein functions from sequence and interactions using a deep ontology-aware classifier.

PubMed

Kulmanov, Maxat; Khan, Mohammed Asif; Hoehndorf, Robert; Wren, Jonathan

2018-02-15

A large number of protein sequences are becoming available through the application of novel high-throughput sequencing technologies. Experimental functional characterization of these proteins is time-consuming and expensive, and is often only done rigorously for few selected model organisms. Computational function prediction approaches have been suggested to fill this gap. The functions of proteins are classified using the Gene Ontology (GO), which contains over 40 000 classes. Additionally, proteins have multiple functions, making function prediction a large-scale, multi-class, multi-label problem. We have developed a novel method to predict protein function from sequence. We use deep learning to learn features from protein sequences as well as a cross-species protein-protein interaction network. Our approach specifically outputs information in the structure of the GO and utilizes the dependencies between GO classes as background information to construct a deep learning model. We evaluate our method using the standards established by the Computational Assessment of Function Annotation (CAFA) and demonstrate a significant improvement over baseline methods such as BLAST, in particular for predicting cellular locations. Web server: http://deepgo.bio2vec.net, Source code: https://github.com/bio-ontology-research-group/deepgo. robert.hoehndorf@kaust.edu.sa. Supplementary data are available at Bioinformatics online. © The Author(s) 2017. Published by Oxford University Press.

Clay mineral continental amplifier for marine carbon sequestration in a greenhouse ocean.

PubMed

Kennedy, Martin J; Wagner, Thomas

2011-06-14

The majority of carbon sequestration at the Earth's surface occurs in marine continental margin settings within fine-grained sediments whose mineral properties are a function of continental climatic conditions. We report very high mineral surface area (MSA) values of 300 and 570 m(2) g in Late Cretaceous black shales from Ocean Drilling Program site 959 of the Deep Ivorian Basin that vary on subcentennial time scales corresponding with abrupt increases from approximately 3 to approximately 18% total organic carbon (TOC). The observed MSA changes with TOC across multiple scales of variability and on a sample-by-sample basis (centimeter scale), provides a rigorous test of a hypothesized influence on organic carbon burial by detrital clay mineral controlled MSA. Changes in TOC also correspond with geochemical and sedimentological evidence for water column anoxia. Bioturbated intervals show a lower organic carbon loading on mineral surface area of 0.1 mg-OC m(-2) when compared to 0.4 mg-OC m(-2) for laminated and sulfidic sediments. Although either anoxia or mineral surface protection may be capable of producing TOC of < 5%, when brought together they produced the very high TOC (10-18%) apparent in these sediments. This nonlinear response in carbon burial resulted from minor precession-driven changes of continental climate influencing clay mineral properties and runoff from the African continent. This study identifies a previously unrecognized land-sea connection among continental weathering, clay mineral production, and anoxia and a nonlinear effect on marine carbon sequestration during the Coniacian-Santonian Oceanic Anoxic Event 3 in the tropical eastern Atlantic.

Glowing clay: Real time tracing using a suite of novel clay based fluorescent tracers

NASA Astrophysics Data System (ADS)

Hardy, Robert; Quinton, John; Pates, Jackie; Coogan, Mike

2015-04-01

Clay is one of the most mobile fractions of soil due to its small particle size. It is also known to sorb many chemicals, such as nutrients (notably phosphorus), agrochemicals and heavy metals. The movement of clay is therefore linked with the transport and fate of these substances. A novel fluorescent clay tracing suite has been produced, together with an imaging technique. This suite consists of qualitative clay tracers, using rhodamine based fluorophores, and quantitative clay tracers, using metal based fluorophores. Efforts have also been made to allow integration of commercially available tracers, which are silt and sand sized. The clay tracers exploit the high affinity that montmorillonite has for Rhodamine B and Ru(bpy)3. This allows for an extremely thin layer of the fluorophore to be sorbed onto the clay's surface, in much that same way as materials in the natural environment will bind to clay. The tracer that is produced retains key chemical and physical properties of clay, such as size, shape and density. The retention of these micro-properties results in the retention of macro-properties, such as tendency to aggregate and cracking on drying. Imaging techniques have been developed to analyse these tracers. The imaging system uses diffused laser light to excite the tracer and a modified DSLR camera to image the soil surface. The images have been compiled into a time lapse video showing the movement of clay over the course of a rainfall event. This is the first time that the quantitative movement of clay has been recorded over a soil surface in real time. 4D data can be extracted from the images allowing the spatial location and intensity of tracer to be monitored over time, with mm precision and on the timescale of seconds. As the system can also work with a commercial tracer it is possible to investigate the movement of particles of almost any size and over a range of scales from soil box to hillside. This allows users to access this technique without the need to produce the tracer themselves.

BiPPred: Combined sequence- and structure-based prediction of peptide binding to the Hsp70 chaperone BiP.

PubMed

Schneider, Markus; Rosam, Mathias; Glaser, Manuel; Patronov, Atanas; Shah, Harpreet; Back, Katrin Christiane; Daake, Marina Angelika; Buchner, Johannes; Antes, Iris

2016-10-01

Substrate binding to Hsp70 chaperones is involved in many biological processes, and the identification of potential substrates is important for a comprehensive understanding of these events. We present a multi-scale pipeline for an accurate, yet efficient prediction of peptides binding to the Hsp70 chaperone BiP by combining sequence-based prediction with molecular docking and MMPBSA calculations. First, we measured the binding of 15mer peptides from known substrate proteins of BiP by peptide array (PA) experiments and performed an accuracy assessment of the PA data by fluorescence anisotropy studies. Several sequence-based prediction models were fitted using this and other peptide binding data. A structure-based position-specific scoring matrix (SB-PSSM) derived solely from structural modeling data forms the core of all models. The matrix elements are based on a combination of binding energy estimations, molecular dynamics simulations, and analysis of the BiP binding site, which led to new insights into the peptide binding specificities of the chaperone. Using this SB-PSSM, peptide binders could be predicted with high selectivity even without training of the model on experimental data. Additional training further increased the prediction accuracies. Subsequent molecular docking (DynaDock) and MMGBSA/MMPBSA-based binding affinity estimations for predicted binders allowed the identification of the correct binding mode of the peptides as well as the calculation of nearly quantitative binding affinities. The general concept behind the developed multi-scale pipeline can readily be applied to other protein-peptide complexes with linearly bound peptides, for which sufficient experimental binding data for the training of classical sequence-based prediction models is not available. Proteins 2016; 84:1390-1407. © 2016 Wiley Periodicals, Inc. © 2016 Wiley Periodicals, Inc.

Evidence of cyclic climatic changes recorded in clay mineral assemblages from a continental Paleocene-Eocene sequence, northwestern Argentina

NASA Astrophysics Data System (ADS)

Do Campo, Margarita; Bauluz, Blanca; del Papa, Cecilia; White, Timothy; Yuste, Alfonso; Mayayo, Maria Jose

2018-06-01

The continental Paleocene-Eocene sequence investigated in this study belongs to the Salta Group, deposited in an intracontinental rift, the Salta Basin (NW Argentina), that evolved from the lower Cretaceous to the middle Paleogene, and is subdivided into the Pirgua, the Balbuena and the Santa Barbara Subgroups. The Maíz Gordo Formation (200 m thick) is the middle unit of the Santa Bárbara Subgroup, deposited during late post-rift sedimentation. We studied the mineralogy of fine-grained horizons of this formation by X-ray diffraction and Scanning Electron Microscopy (SEM) in order to examine the connection between vertical changes in clay mineralogy in alluvial sediments and paleosols, and global paleoclimatic changes registered during the Paleogene. Paleosols vary from calcic vertisols in the lowermost levels, to inseptisols and gleysols in intermediate positions, to gleyed oxisols in the upper section, indicating increased chemical weathering through time. Clay mineral relative abundances vary with a general increase in kaolinite content from bottom to top. However, at one site there are significant variations in kaolinite/muscovite (Kln/Ms) that define five cycles of kaolinite abundance and Kln/Ms. that indicate cyclic patterns of paleoprecipitation and paleotemperature. These are interpreted as several short-lived hyperthermals during the Paleocene-early Eocene in the Southern Hemisphere, which correlate with well-established episodes of warmth documented from the Northern Hemisphere.

Submicron structures provide preferential spots for carbon and nitrogen sequestration in soils

PubMed Central

Vogel, Cordula; Mueller, Carsten W.; Höschen, Carmen; Buegger, Franz; Heister, Katja; Schulz, Stefanie; Schloter, Michael; Kögel-Knabner, Ingrid

2014-01-01

The sequestration of carbon and nitrogen by clay-sized particles in soils is well established, and clay content or mineral surface area has been used to estimate the sequestration potential of soils. Here, via incubation of a sieved (<2 mm) topsoil with labelled litter, we find that only some of the clay-sized surfaces bind organic matter (OM). Surprisingly, <19% of the visible mineral areas show an OM attachment. OM is preferentially associated with organo-mineral clusters with rough surfaces. By combining nano-scale secondary ion mass spectrometry and isotopic tracing, we distinguish between new labelled and pre-existing OM and show that new OM is preferentially attached to already present organo-mineral clusters. These results, which provide evidence that only a limited proportion of the clay-sized surfaces contribute to OM sequestration, revolutionize our view of carbon sequestration in soils and the widely used carbon saturation estimates. PMID:24399306

Investigating the behaviour of Mg isotopes during the formation of clay minerals

NASA Astrophysics Data System (ADS)

Wimpenny, Joshua; Colla, Christopher A.; Yin, Qing-Zhu; Rustad, James R.; Casey, William H.

2014-03-01

We present elemental and isotopic data detailing how the Mg isotope system behaves in natural and experimentally synthesized clay minerals. We show that the bulk Mg isotopic composition (δ26Mg) of a set of natural illite, montmorillonite and kaolinite spans a 2‰ range, and that their isotopic composition depends strongly on a balance between the relative proportions of structural and exchangeable Mg. After acid leaching, these natural clays become relatively enriched in isotopically heavy Mg by between 0.2‰ and 1.6‰. Results of exchange experiments indicate that the Mg that has adsorbed to interlayer spaces and surface charged sites is relatively enriched in isotopically light Mg compared to the residual clay. The isotopic composition of this exchangeable Mg (-1.49‰ to -2.03‰) is characteristic of the isotopic composition of Mg found in many natural waters. Further experiments with an isotopically characterized MgCl2 solution shows that the clay minerals adsorb this exchangeable Mg with little or no isotopic fractionation, although we cannot discount the possibility that the uptake of exchangeable Mg does so with a slight preference for 24Mg. To characterize the behaviour of Mg isotopes during clay mineral formation we synthesized brucite (Mg(OH)2), which we consider to be a good analogue for the incorporation of Mg into the octahedral sheet of Mg-rich clay minerals or into the brucitic layer of clays such as chlorite. In our experiment the brucite mineral becomes enriched in the heavy isotopes of Mg while the corresponding solution is always relatively enriched in isotopically light Mg. The system reaches a steady state after 10 days with a final fractionation factor (αsolid-solution) of 1.0005 at near-neutral pH. This result is consistent with the general consensus that secondary clay minerals preferentially take up isotopically heavy Mg during their formation. However our results also show that exchangeable Mg is an important component within bulk clay minerals and can have an important influence over the bulk clay δ26Mg value. Modeling shows that in certain soils or sediments where the percentage of exchangeable Mg is >30% and the isotopic composition of the exchangeable Mg is around -2‰, the generation of bulk δ26Mg values of <-0.5‰ is likely. On a broader scale, Mg-rich minerals such as smectite and illite are likely to impart a stronger control over the Mg budget in clay rich sediments, and their high structural Mg component is likely to result in bulk sediment δ26Mg values that are closer in composition to the UCC. Despite this, results of modeling, together with experimental observation suggests that the uptake of exchangeable Mg into these clay rich sediments could cause a decrease in the bulk δ26Mg value by up to ˜0.3-0.4‰. This should be accounted for when assessing the δ26Mg value of sediments on a crustal scale.

HYDROTHERMAL MINERALOGY OF RESEARCH DRILL HOLE Y-3, YELLOWSTONE NATIONAL PARK, WYOMING.

USGS Publications Warehouse

Bargar, Keith E.; Beeson, Melvin H.

1984-01-01

The approximate paragenetic sequence of hydrothermal minerals in the Y-3 U. S. Geological Survey research diamond-drill hole in Lower Geyser Basin, Yellowstone National Park, Wyoming, is: hydrothermal chalcedony, hematite, pyrite, quartz, clay minerals (smectite and mixed-layer illite-smectite), calcite, chlorite, fluorite, pyrite, quartz, zeolite minerals (analcime, dachiardite, laumontite, stilbite, and yugawaralite), and clay minerals (smectite and mixed-layer illite-smectite). A few hydrothermal minerals that were identified in drill core Y-3 (lepidolite, aegirine, pectolite, and truscottite) are rarely found in modern geothermal areas. The alteration minerals occur primarily as vug and fracture fillings that were deposited from cooling thermal water. Refs.

Learning outcomes and student-perceived value of clay modeling and cat dissection in undergraduate human anatomy and physiology.

PubMed

DeHoff, Mary Ellen; Clark, Krista L; Meganathan, Karthikeyan

2011-03-01

Alternatives and/or supplements to animal dissection are being explored by educators of human anatomy at different academic levels. Clay modeling is one such alternative that provides a kinesthetic, three-dimensional, constructive, and sensory approach to learning human anatomy. The present study compared two laboratory techniques, clay modeling of human anatomy and dissection of preserved cat specimens, in the instruction of muscles, peripheral nerves, and blood vessels. Specifically, we examined the effect of each technique on student performance on low-order and high-order questions related to each body system as well as the student-perceived value of each technique. Students who modeled anatomic structures in clay scored significantly higher on low-order questions related to peripheral nerves; scores were comparable between groups for high-order questions on peripheral nerves and for questions on muscles and blood vessels. Likert-scale surveys were used to measure student responses to statements about each laboratory technique. A significantly greater percentage of students in the clay modeling group "agreed" or "strongly agreed" with positive statements about their respective technique. These results indicate that clay modeling and cat dissection are equally effective in achieving student learning outcomes for certain systems in undergraduate human anatomy. Furthermore, clay modeling appears to be the preferred technique based on students' subjective perceptions of value to their learning experience.

Nanofiber Enabled, Multi - Target Passive Sampling Device for Determination of the Freely Dissolved Sediment Pore Water Concentrations of Organic Contaminants

DTIC Science & Technology

2016-06-01

foil. Nanofiber diameters were adjusted between ~100-200 nm by controlling the electrospinning solution (e.g., viscosity , dielectric constant...acetate)/ Clay Nanocomposite Fibers. J Polym Sci Pol Phys 2009, 47, (24), 2501-2508. 36. Piperno, S.; Lozzi, L.; Rastelli, R.; Passacantando, M.; Santucci

Identifying soil landscape units at the district scale by numerically clustering remote and proximal sensed data

NASA Astrophysics Data System (ADS)

Zare, Ehsan; Huang, Jingyi; Triantafilis, John

2017-04-01

Identifying soil landscape units at a district scale is important as it allows for sustainable land-use management. However, given the large number of soil properties that need to be understood and mapped, cost-effective methods are required. In this study, we use a digital soil mapping (DSM) approach where remote and proximal sensed ancillary data collected across a farming district near Bourke, are numerical clustered (fuzzy k-means: FKM) to identify soil landscape units. The remote data was obtained from an air-borne gamma-ray spectrometer survey (i.e. potassium-K, uranium-U, thorium-Th and total counts-TC). Proximal sensed data was collected using an EM38 in the horizontal (EM38h) and vertical (EM38v) mode of operation. The FKM analysis (using Mahalanobis metric) of the kriged ancillary (i.e. common 100 m grid) data revealed a fuzziness exponent (phi) of 1.4 was suitable for further analysis and that k = 4 classes was smallest for the fuzziness performance index (FPI) and normalised classification entropy (NCE). Using laboratory measured physical (i.e. clay) and chemical (i.e. CEC, ECe and pH) properties we found k = 4 was minimized in terms of mean squared prediction error (i.e. 2p,C) when considering topsoil (0-0.3 m) clay (159.76), CEC (21.943), ECe (13.56) and pH (0.2296) and subsoil (0.9-1.2 m) clay (80.81), CEC (31.251) and ECe (16.66). These sigma2p,C are smaller than those calculated using the mapped soil landscape units identified using a traditional approach. Nevertheless, class 4A represents the Aeolian soil landscape (i.e. Nb4), while 4D, represents deep grey (CC19) self-mulching clays, and 4B and 4C yellow-grey (II1) self-mulching clays adjacent to the river and clay alluvial plain, respectively. The differences in clay and CEC reveal why 4B, 4C and 4D have been extensively developed for irrigated cotton production and also why the slightly less reactive 4B might be a source of deep drainage; evidenced by smaller topsoil (2.13 dS/m) and subsoil (3.76 dS/m) ECe. The research has implications for providing meaningful DSM of soil landscape units for farmers at districts scales where traditional methods are restrictive in terms of time and cost.

Multi-scale Holocene Asian monsoon variability deduced from a twin-stalagmite record in southwestern China

NASA Astrophysics Data System (ADS)

Huang, Wei; Wang, Yongjin; Cheng, Hai; Edwards, Richard Lawrence; Shen, Chuan-Chou; Liu, Dianbing; Shao, Qingfeng; Deng, Chao; Zhang, Zhenqiu; Wang, Quan

2016-07-01

We present two isotopic (δ18O and δ13C) sequences of a twin-stalagmite from Zhuliuping Cave, southwestern China, with 230Th dates from 14.6 to 4.6 ka. The stalagmite δ18O record characterizes orbital- to decadal-scale variability of Asian summer monsoon (ASM) intensity, with the Holocene optimum period (HOP) between 9.8 and 6.8 ka BP which is reinforced by its co-varying δ13C data. The large multi-decadal scale amplitude of the cave δ18O indicates its high sensitivity to climate change. Four centennial-scale weak ASM events during the early Holocene are centered at 11.2, 10.8, 9.1 and 8.2 ka. They can be correlated to cold periods in the northern high latitudes, possibly resulting from rapid dynamics of atmospheric circulation associated with North Atlantic cooling. The 8.2 ka event has an amplitude more than two-thirds that of the Younger Dryas (YD), and is significantly stronger than other cave records in the Asia monsoon region, likely indicating a more severe dry climate condition at the cave site. At the end of the YD event, the δ13C record lags the δ18O record by 300-500 yr, suggesting a multi-centennial slow response of vegetation and soil processes to monsoon enhancement.

Holocene surge-history of the Eyjabakkajökull glacier inferred from varved lake sediments on eastern Iceland

NASA Astrophysics Data System (ADS)

Striberger, J.; Bjorck, S.; Ingolfsson, O.; Kjaer, K.; Snowball, I.; Uvo, C. B.

2009-12-01

Properties of varved lake sediments from Lake Lögurinn on eastern Iceland and their link to glacial processes of Eyjabakkajökull, a surging outlet glacier of the Vatnajökull ice cap, is examined. An 18 m long sediment sequence obtained from the lake, covering at least the past ~ 9 200 years, displays a distinct recurring pattern of light-coloured clay dominated laminae sections. The thickness of the light-coloured laminae is mainly controlled by the amount of glacial rock flour transported from Eyjabakkajökull. These light laminae are interlaid by coarser dark-coloured laminae mainly formed by suspended matter transported to the lake by the large non-glacial river Grímsá. During the recent surge of Eyjabakkajökull in 1972, the amount of suspended matter transported to the lake increased significantly. The surge was followed by years of recurring drainages of Lake Háöldulón, an ice-dammed lake that was formed shortly after the surge. As a result, the amount of glacial rock flour transported to Lake Lögurinn was higher than usual as long as Lake Háöldulón continued to drain (i.e. as long as the ice front was in an advanced position enough to dam the lake). This increase in glacially derived rock flour is reflected in the sediments, as the varve that was formed in 1972 constitutes the thickest light-coloured laminae deposited during the 20th century, which is followed by the second thickest light-coloured laminae, deposited in 1973. From there on, the thicknesses of the light-coloured laminae gradually fade out. Based on these modern observations, we suggest that the recurring cyclic pattern of light-coloured clay dominated laminae sections in the sediment sequence is related to past surges of Eyjabakkajökull, followed by drainages of Lake Háöldulón. Recurring cycles of light-coloured clay dominated laminae began to develop close to the Hekla-3 and Hekla-4 tephras (ca. 3000-4000 years BP), which also coincides with the time when the varves became more distinct. Further down in the sequence, the recurring cycles of light-coloured laminae are not found and any varves are in general diffuse or missing. Hypothetically, the reason for this might be that the suspended matter delivered from the glacier was transported elsewhere at this time. However, based on the large-scale morphology of the area, we find it more likely that Eyjabakkajökull, and thus parts of, or the whole Vatnajökull ice cap, was smaller or perhaps not present during the mid-Holocene and thus had little or no influence on the sedimentation in Lake Lögurinn.

Past environmental/climatic changes in the northern part of the South China Sea, input from multi-proxy analysis of core MD12-3432

NASA Astrophysics Data System (ADS)

Chen, Quan; Kissel, Catherine; Liu, Zhifei

2017-04-01

In the South China Sea, the magnetic component of marine sediment is a powerful recorder of paleoenvironmental changes linked to the regional and global climate. Based on the knowledge of the sedimentary signature of the potential sources for terrigenous sediments, the composition of marine sediments can be used to decipher the different mechanisms, forcing, and transport vectors. We report here the analysis of the magnetic properties combined with sortable silt and clay mineralogy of a 51 m long sedimentary sequence retrieved from the northern South China Sea and covering the last 400 ka. Magnetic minerals with different coercivities (magnetite, pyrrhotite and hematite) are mixed in the sequence and their relative concentration varies with time. Glacial low sea-levels reduce the land-site distance and they are illlustrated by higher concentrations in magnetites and iron-sulfides (pyrrhotite) related to the sediments previously deposited on the continental shelf and re-worked by the river. This is accompanied by increasing kaolinite content within the clay assemblage (Pearl River signature) and by coarser grains. Superimposed to this eccentricity periodicity, hematite content and smectite/(illite+chlorite) ratio present a predominant precession periodicity synchronous with the northern hemisphere summer insolation changes and therefore with that of the East Asian summer monsoon. Events of high hematite content, in phase with finer grains, coincide with precession lows, while smectite/(illite+chlorite) ratio is maximum during precession highs. Knowing that smectite is mainly produced by contemporaneous chemical weathering intensity in Luzon, we use the smectite/(illite+chlorite) ratio as a tracer for increasing weathering rate in Luzon, in turn related to enhanced East Asian summer monsoon. Hematite is not produced in large amount on adjacent lands and its association with fine sediment grains suggests that its periodic supply is related to the eolian dust transported from the Central China deserts to the studied site. Higher hematite content at this latitude may therefore be used as a tracer for weak East Asian summer monsoon intensity.

Geogrid Reinforced Base Course for Flexible Pavements for Light Aircraft: Literature Review and Test Section Design

DTIC Science & Technology

1991-05-01

GeoarId Reinforced Agregate Layers over Weak Clay Subgrades. Milligan and Love(Z3) conducted small-scale laboratory model tests under plane strain...34. Based on the very limited literature available on geogrid applications in airfield pavements, the literature review was expanded to cover railroad...thicknesses and clay subgrade strengths. Performance of the reinforced systems was significantly better. The increased performance resulted from the

Spatial variability of soil salinity in coastal saline soil at different scales in the Yellow River Delta, China.

PubMed

Wang, Zhuoran; Zhao, Gengxing; Gao, Mingxiu; Chang, Chunyan

2017-02-01

The objectives of this study were to explore the spatial variability of soil salinity in coastal saline soil at macro, meso and micro scales in the Yellow River delta, China. Soil electrical conductivities (ECs) were measured at 0-15, 15-30, 30-45 and 45-60 cm soil depths at 49 sampling sites during November 9 to 11, 2013. Soil salinity was converted from soil ECs based on laboratory analyses. Our results indicated that at the macro scale, soil salinity was high with strong variability in each soil layer, and the content increased and the variability weakened with increasing soil depth. From east to west in the region, the farther away from the sea, the lower the soil salinity was. The degrees of soil salinization in three deeper soil layers are 1.14, 1.24 and 1.40 times higher than that in the surface soil. At the meso scale, the sequence of soil salinity in different topographies, soil texture and vegetation decreased, respectively, as follows: depression >flatland >hillock >batture; sandy loam >light loam >medium loam >heavy loam >clay; bare land >suaeda salsa >reed >cogongrass >cotton >paddy >winter wheat. At the micro scale, soil salinity changed with elevation in natural micro-topography and with anthropogenic activities in cultivated land. As the study area narrowed down to different scales, the spatial variability of soil salinity weakened gradually in cultivated land and salt wasteland except the bare land.

Polyacrylamide sorption opportunity on interlayer and external pore surfaces of contaminant barrier clays.

PubMed

Inyang, Hilary I; Bae, Sunyoung

2005-01-01

Physico-chemical interactions among polymer molecules in aqueous solution and clay mineralogical/textural characteristics influence the sorption of polymer molecules on clay barrier minerals. Amendment of potentially unstable barrier clays with aqueous polymers can improve barrier material resistance to environmental stresses during service. In this research, the ability of molecular coils of polyacrylamide (PAM) to overlap in solution and to enter interlayer space in Na-montmorillonite (specific surface=31.82+/-0.22 m2 g(-1)) and kaolinite (specific surface=18+/-2 m2 g(-1)) were analyzed theoretically and experimentally, using solution viscosity measurements, and X-ray diffractometry. Experimental data on two theoretical indices: relative size ratio (RSR); and molecular availability (Ma) that are formulated to scale polymer molecular sorption on clay interlayer, indicate that the sorption of PAM A (Mw=4000000) and PAM B (Mw=7000000) does not produce any significant change in the d-spacing of both clay minerals. Although the negative Ma values of -3.51 g l(-1) for PAM A and -3.88 g l(-1) for PAM B indicate high levels of entanglement of polymer molecular coils in solution, sorption data confirm that the entangled coils are still able to sorb onto Na-montmorillonite highly and kaolinite to a lesser extent.

Response of marine benthic fauna to thin-layer capping with activated carbon in a large-scale field experiment in the Grenland fjords, Norway.

PubMed

Samuelsson, Göran S; Raymond, Caroline; Agrenius, Stefan; Schaanning, Morten; Cornelissen, Gerard; Gunnarsson, Jonas S

2017-06-01

A field experiment with thin-layer capping was conducted in the Grenland fjords, Norway, for remediation in situ of mercury and dioxin-contaminated sediments. Experimental fields at 30 and 95 m depth were capped with (i) powdered activated carbon (AC) mixed with clay (AC+cla`y), (ii) clay, and (iii) crushed limestone. Ecological effects on the benthic community and species-feeding guilds were studied 1 and 14 months after capping, and a total of 158 species were included in the analyses. The results show that clay and limestone had only minor effects on the benthic community, while AC+clay caused severe perturbations. AC+clay reduced the abundance, biomass, and number of species by up to 90% at both 30 and 95 m depth, and few indications of recovery were found during the period of this investigation. The negative effects of AC+clay were observed on a wide range of species with different feeding strategies, although the suspension feeding brittle star Amphiura filiformis was particularly affected. Even though activated carbon is effective in reducing sediment-to-water fluxes of dioxins and other organic pollutants, this study shows that capping with powdered AC can lead to substantial disturbances to the benthic community.

Satellite-derived mineral mapping and monitoring of weathering, deposition and erosion

PubMed Central

Cudahy, Thomas; Caccetta, Mike; Thomas, Matilda; Hewson, Robert; Abrams, Michael; Kato, Masatane; Kashimura, Osamu; Ninomiya, Yoshiki; Yamaguchi, Yasushi; Collings, Simon; Laukamp, Carsten; Ong, Cindy; Lau, Ian; Rodger, Andrew; Chia, Joanne; Warren, Peter; Woodcock, Robert; Fraser, Ryan; Rankine, Terry; Vote, Josh; de Caritat, Patrice; English, Pauline; Meyer, Dave; Doescher, Chris; Fu, Bihong; Shi, Pilong; Mitchell, Ross

2016-01-01

The Earth’s surface comprises minerals diagnostic of weathering, deposition and erosion. The first continental-scale mineral maps generated from an imaging satellite with spectral bands designed to measure clays, quartz and other minerals were released in 2012 for Australia. Here we show how these satellite mineral maps improve our understanding of weathering, erosional and depositional processes in the context of changing weather, climate and tectonics. The clay composition map shows how kaolinite has developed over tectonically stable continental crust in response to deep weathering during northwardly migrating tropical conditions from 45 to 10 Ma. The same clay composition map, in combination with one sensitive to water content, enables the discrimination of illite from montmorillonite clays that typically develop in large depositional environments over thin (sinking) continental crust such as the Lake Eyre Basin. Cutting across these clay patterns are sandy deserts that developed <10 Ma and are well mapped using another satellite product sensitive to the particle size of silicate minerals. This product can also be used to measure temporal gains/losses of surface clay caused by periodic wind erosion (dust) and rainfall inundation (flood) events. The accuracy and information content of these satellite mineral maps are validated using published data. PMID:27025192

Rock Magnetic Properties of Laguna Carmen (Tierra del Fuego, Argentina): Implications for Paleomagnetic Reconstruction

NASA Astrophysics Data System (ADS)

Gogorza, C. G.; Orgeira, M. J.; Ponce, F.; Fernández, M.; Laprida, C.; Coronato, A.

2013-05-01

We report preliminary results obtained from a multi-proxy analysis including paleomagnetic and rock-magnetic studies of two sediment cores of Laguna Carmen (53°40'60" S 68°19'0" W, ~83m asl) in the semiarid steppe in northern Tierra del Fuego island, Southernmost Patagonia, Argentina. Two short cores (115 cm) were sampled using a Livingstone piston corer during the 2011 southern fall. Sediments are massive green clays (115 to 70 cm depth) with irregularly spaced thin sandy strata and lens. Massive yellow clay with thin sandy strata continues up to 30 cm depth; from here up to 10 cm yellow massive clays domain. The topmost 10 cm are mixed yellow and green clays with fine sand. Measurements of intensity and directions of Natural Remanent Magnetization (NRM), magnetic susceptibility, isothermal remanent magnetization, saturation isothermal remanent magnetization (SIRM), back field and anhysteretic remanent magnetization at 100 mT (ARM100mT) were performed and several associated parameters calculated (ARM100mT/k and SIRM/ ARM100mT). Also, as a first estimate of relative magnetic grain-size variations, the median destructive field of the NRM (MDFNRM), was determined. Additionally, we present results of magnetic parameters measured with vibrating sample magnetometer (VSM). The stability of the NRM was analyzed by alternating field demagnetization. The magnetic properties have shown variable values, showing changes in both grain size and concentration of magnetic minerals. It was found that the main carrier of remanence is magnetite with the presence of hematite in very low percentages. This is the first paleomagnetic study performed in lakes located in the northern, semiarid fuegian steppe, where humid-dry cycles have been interpreted all along the Holocene from an aeolian paleosoil sequence (Orgeira et el, 2012). Comparison between paleomagnetic records of Laguna Carmen and results obtained in earlier studies carried out at Laguna Potrok Aike (Gogorza et al., 2012) were performed. References Gogorza, C.S.G., Irurzun, M.A., Sinito, A.M., Lisé-Pronovost, A., St-Onge, G., Haberzettl, T., Ohlendorf, C., Kastner, S., Zolitschka, B., 2012. High-resolution paleomagnetic records from Laguna Potrok Aike (Patagonia, Argentina) for the last 16,000 years. Geochemistry Geophysics Geosystems. 13, Q12Z37. Orgeira, M.J., Vásquez, C.A., Coronato, A., Ponce, F., Moreto, A., Osterrieth, M, Egli, R., Onorato, R., 2012. Magnetic properties of Holocene edaphized silty eolian sediments from Tierra del Fuego (Argentina). Revista de la Sociedad Geológica de España. 25 (1-2), 45-56.

Leg 67: the Deep Sea Drilling Project Mid-America Trench transect off Guatemala.

USGS Publications Warehouse

von Huene, Roland E.

1980-01-01

Drilling on the Cocos plate recovered a basal chalk sequence deposited during early and mid-Miocene time, a short interval of abyssal red clay, and an upper sequence of late Miocene and younger sediment deposited within an area influenced by a terrigenous source. In the trench, a mud and sand fill less than 400,000 yr old overlies the oceanic sequence. The entire section shows no evidence of compressive deformation. In contrast, the section cored on the trench's landward slope 3 km from the trench axis is affected by tectonism. The section contains a Cretaceous to Pliocene claystone sequence capped by Pliocene to Quaternary hemipelagic slope deposits.- from Authors

Phase transformations in steels: Processing, microstructure, and performance

DOE PAGES

Gibbs, Paul J.

2014-04-03

In this study, contemporary steel research is revealing new processing avenues to tailor microstructure and properties that, until recently, were only imaginable. Much of the technological versatility facilitating this development is provided by the understanding and utilization of the complex phase transformation sequences available in ferrous alloys. Today we have the opportunity to explore the diverse phenomena displayed by steels with specialized analytical and experimental tools. Advances in multi-scale characterization techniques provide a fresh perspective into microstructural relationships at the macro- and micro-scale, enabling a fundamental understanding of the role of phase transformations during processing and subsequent deformation.

Investigating the Thermal Limit of Clay Minerals for Applications in Nuclear Waste Repository Design

NASA Astrophysics Data System (ADS)

Matteo, E. N.; Miller, A. W.; Kruichak, J.; Mills, M.; Tellez, H.; Wang, Y.

2013-12-01

Clay minerals are likely candidates to aid in nuclear waste isolation due to their low permeability, favorable swelling properties, and high cation sorption capacities. Establishing the thermal limit for clay minerals in a nuclear waste repository is a potentially important component of repository design, as flexibility of the heat load within the repository can have a major impact on the selection of repository design. For example, the thermal limit plays a critical role in the time that waste packages would need to cool before being transferred to the repository. Understanding the chemical and physical changes that occur in clay minerals at various temperatures above the current thermal limit (of 100 °C) can enable decision-makers with information critical to evaluating the potential trade-offs of increasing the thermal limit within the repository. Most critical is gaining understanding of how varying thermal conditions in the repository will impact radionuclide sorption and transport in clay materials either as engineered barriers or as disposal media. A variety of clays (illite, mixed layer illite/smectite, montmorillonite, and palygorskite) were heated for a range of temperatures between 100-500 °C. These samples were characterized by a variety of methods, including nitrogen adsorption, x-ray diffraction, thermogravimetric analysis, barium chloride exchange for cation exchange capacity (CEC), and iodide sorption. The nitrogen porosimetry shows that for all the clays, thermally-induced changes in BET surface area are dominated by collapse/creation of the microporosity, i.e. pore diameters < 17 angstroms. Changes in micro porosity (relative to no heat treatment) are most significant for heat treatments 300 °C and above. Alterations are also seen in the chemical properties (CEC, XRD, iodide sorption) of clays, and like pore size distribution changes, are most significant above 300 °C. Overall, the results imply that changes seen in pores size distribution correlate with cation exchange capacity and cation exchange processes. Sandia National Laboratories is a multi-program laboratory managed and operated by Sandia Corporation, a wholly owned subsidiary of Lockheed Martin Corporation, for the U.S. Department of Energy's Nation Nuclear Security Administration under contract DE-AC04-94AL85000. SAND Number: 2013-6352A.

Multiscale Informatics for Low-Temperature Propane Oxidation: Further Complexities in Studies of Complex Reactions

DOE Office of Scientific and Technical Information (OSTI.GOV)

Burke, Michael P.; Goldsmith, C. Franklin; Klippenstein, Stephen J.

2015-07-16

We have developed a multi-scale approach (Burke, M. P.; Klippenstein, S. J.; Harding, L. B. Proc. Combust. Inst. 2013, 34, 547–555.) to kinetic model formulation that directly incorporates elementary kinetic theories as a means to provide reliable, physics-based extrapolation to unexplored conditions. Here, we extend and generalize the multi-scale modeling strategy to treat systems of considerable complexity – involving multi-well reactions, potentially missing reactions, non-statistical product branching ratios, and non-Boltzmann (i.e. non-thermal) reactant distributions. The methodology is demonstrated here for a subsystem of low-temperature propane oxidation, as a representative system for low-temperature fuel oxidation. A multi-scale model is assembled andmore » informed by a wide variety of targets that include ab initio calculations of molecular properties, rate constant measurements of isolated reactions, and complex systems measurements. Active model parameters are chosen to accommodate both “parametric” and “structural” uncertainties. Theoretical parameters (e.g. barrier heights) are included as active model parameters to account for parametric uncertainties in the theoretical treatment; experimental parameters (e.g. initial temperatures) are included to account for parametric uncertainties in the physical models of the experiments. RMG software is used to assess potential structural uncertainties due to missing reactions. Additionally, branching ratios among product channels are included as active model parameters to account for structural uncertainties related to difficulties in modeling sequences of multiple chemically activated steps. The approach is demonstrated here for interpreting time-resolved measurements of OH, HO2, n-propyl, i-propyl, propene, oxetane, and methyloxirane from photolysis-initiated low-temperature oxidation of propane at pressures from 4 to 60 Torr and temperatures from 300 to 700 K. In particular, the multi-scale informed model provides a consistent quantitative explanation of both ab initio calculations and time-resolved species measurements. The present results show that interpretations of OH measurements are significantly more complicated than previously thought – in addition to barrier heights for key transition states considered previously, OH profiles also depend on additional theoretical parameters for R + O2 reactions, secondary reactions, QOOH + O2 reactions, and treatment of non-Boltzmann reaction sequences. Extraction of physically rigorous information from those measurements may require more sophisticated treatment of all of those model aspects, as well as additional experimental data under more conditions, to discriminate among possible interpretations and ensure model reliability. Keywords: Optimization, Uncertainty quantification, Chemical mechanism, Low-Temperature Oxidation, Non-Boltzmann« less

Improving resistivity survey resolution at sites with limited spatial extent using buried electrode arrays

NASA Astrophysics Data System (ADS)

Kiflu, H.; Kruse, S.; Loke, M. H.; Wilkinson, P. B.; Harro, D.

2016-12-01

Electrical resistivity tomography (ERT) surveys are widely used in geological, environmental and engineering studies. However, the effectiveness of surface ERT surveys is limited by decreasing resolution with depth and near the ends of the survey line. Increasing the array length will increase depth of investigation, but may not be possible at urban sites where access is limited. One novel method of addressing these limitations while maintaining lateral coverage is to install an array of deep electrodes. Referred to here as the Multi-Electrode Resistivity Implant Technique (MERIT), self-driving pointed electrodes are implanted at depth below each surface electrode in an array, using direct-push technology. Optimal sequences of readings have been identified with the "Compare R" method of Wilkinson. Numerical, laboratory, and field case studies are applied to examine the effectiveness of the MERIT method, particularly for use in covered karst terrain. In the field case studies, resistivity images are compared against subsurface structure defined from borings, GPR surveys, and knowledge of prior land use. In karst terrain where limestone has a clay overburden, traditional surface resistivity methods suffer from lack of current penetration through the shallow clay layer. In these settings, the MERIT method is found to improve resolution of features between the surface and buried array, as well as increasing depth of penetration and enhancing imaging capabilities at the array ends. The method functions similar to a cross-borehole array between horizontal boreholes, and suffers from limitations common to borehole arrays. Inversion artifacts are common at depths close to the buried array, and because some readings involve high geometric factors, inversions are more susceptible to noise than traditional surface arrays. Results are improved by using errors from reciprocal measurements to weight the data during the inversion.

Alignment-free microbial phylogenomics under scenarios of sequence divergence, genome rearrangement and lateral genetic transfer.

PubMed

Bernard, Guillaume; Chan, Cheong Xin; Ragan, Mark A

2016-07-01

Alignment-free (AF) approaches have recently been highlighted as alternatives to methods based on multiple sequence alignment in phylogenetic inference. However, the sensitivity of AF methods to genome-scale evolutionary scenarios is little known. Here, using simulated microbial genome data we systematically assess the sensitivity of nine AF methods to three important evolutionary scenarios: sequence divergence, lateral genetic transfer (LGT) and genome rearrangement. Among these, AF methods are most sensitive to the extent of sequence divergence, less sensitive to low and moderate frequencies of LGT, and most robust against genome rearrangement. We describe the application of AF methods to three well-studied empirical genome datasets, and introduce a new application of the jackknife to assess node support. Our results demonstrate that AF phylogenomics is computationally scalable to multi-genome data and can generate biologically meaningful phylogenies and insights into microbial evolution.

Sensitivity of the North Atlantic Basin to cyclic climatic forcing during the early Cretaceous

USGS Publications Warehouse

Dean, W.E.; Arthur, M.A.

1999-01-01

Striking cyclic interbeds of laminated dark-olive to black marlstone and bioturbated white to light-gray limestone of Neocomian (Early Cretaceous) age have been recovered at Deep Sea Drilling Project (DSDP) and Ocean Drilling Project (ODP) sites in the North Atlantic. These Neocomian sequences are equivalent to the Maiolica Formation that outcrops in the Tethyan regions of the Mediterranean and to thick limestone sequences of the Vocontian Trough of France. This lithologic unit marks the widespread deposition of biogenic carbonate over much of the North Atlantic and Tethyan seafloor during a time of overall low sealevel and a deep carbonate compensation depth. The dark clay-rich interbeds typically are rich in organic carbon (OC) with up to 5.5% OC in sequences in the eastern North Atlantic. These eastern North Atlantic sequences off northwest Africa, contain more abundant and better preserved hydrogen-rich, algal organic matter (type II kerogen) relative to the western North Atlantic, probably in response to coastal upwelling induced by an eastern boundary current in the young North Atlantic Ocean. The more abundant algal organic matter in sequences in the eastern North Atlantic is also expressed in the isotopic composition of the carbon in that organic matter. In contrast, organic matter in Neocomian sequences in the western North Atlantic along the continental margin of North America has geochemical and optical characteristics of herbaceous, woody, hydrogen-poor, humic, type III kerogen. The inorganic geochemical characteristics of the dark clay-rich (80% CaCO3) interbeds in both the eastern and western basins of the North Atlantic suggest that they contain minor amounts of relatively unweathered eolian dust derived from northwest Africa during dry intervals.

Extreme flood event reconstruction spanning the last century in the El Bibane Lagoon (southeastern Tunisia): a multi-proxy approach

NASA Astrophysics Data System (ADS)

Affouri, Aida; Dezileau, Laurent; Kallel, Nejib

2017-06-01

Climate models project that rising atmospheric carbon dioxide concentrations will increase the frequency and the severity of some extreme weather events. The flood events represent a major risk for populations and infrastructures settled on coastal lowlands. Recent studies of lagoon sediments have enhanced our knowledge on extreme hydrological events such as palaeo-storms and on their relation with climate change over the last millennium. However, few studies have been undertaken to reconstruct past flood events from lagoon sediments. Here, the past flood activity was investigated using a multi-proxy approach combining sedimentological and geochemical analysis of surfaces sediments from a southeastern Tunisian catchment in order to trace the origin of sediment deposits in the El Bibane Lagoon. Three sediment sources were identified: marine, fluvial and aeolian. When applying this multi-proxy approach on core BL12-10, recovered from the El Bibane Lagoon, we can see that finer material, a high content of the clay and silt, and a high content of the elemental ratios (Fe / Ca and Ti / Ca) characterise the sedimentological signature of the palaeo-flood levels identified in the lagoonal sequence. For the last century, which is the period covered by the BL12-10 short core, three palaeo-flood events were identified. The age of these flood events have been determined by 210Pb and 137Cs chronology and give ages of AD 1995 ± 6, 1970 ± 9 and 1945 ± 9. These results show a good temporal correlation with historical flood events recorded in southern Tunisia in the last century (AD 1932, 1969, 1979 and 1995). Our finding suggests that reconstruction of the history of the hydrological extreme events during the upper Holocene is possible in this location through the use of the sedimentary archives.

Clay mineral continental amplifier for marine carbon sequestration in a greenhouse ocean

PubMed Central

Kennedy, Martin J.; Wagner, Thomas

2011-01-01

The majority of carbon sequestration at the Earth’s surface occurs in marine continental margin settings within fine-grained sediments whose mineral properties are a function of continental climatic conditions. We report very high mineral surface area (MSA) values of 300 and 570 m2 g in Late Cretaceous black shales from Ocean Drilling Program site 959 of the Deep Ivorian Basin that vary on subcentennial time scales corresponding with abrupt increases from approximately 3 to approximately 18% total organic carbon (TOC). The observed MSA changes with TOC across multiple scales of variability and on a sample-by-sample basis (centimeter scale), provides a rigorous test of a hypothesized influence on organic carbon burial by detrital clay mineral controlled MSA. Changes in TOC also correspond with geochemical and sedimentological evidence for water column anoxia. Bioturbated intervals show a lower organic carbon loading on mineral surface area of 0.1 mg-OC m-2 when compared to 0.4 mg-OC m-2 for laminated and sulfidic sediments. Although either anoxia or mineral surface protection may be capable of producing TOC of < 5%, when brought together they produced the very high TOC (10–18%) apparent in these sediments. This nonlinear response in carbon burial resulted from minor precession-driven changes of continental climate influencing clay mineral properties and runoff from the African continent. This study identifies a previously unrecognized land–sea connection among continental weathering, clay mineral production, and anoxia and a nonlinear effect on marine carbon sequestration during the Coniacian-Santonian Oceanic Anoxic Event 3 in the tropical eastern Atlantic. PMID:21576498

Nanoscale Experimental Characterization and 3D Mechanistic Modeling of Shale with Quantified Heterogeneity

NASA Astrophysics Data System (ADS)

Bennett, K. C.; Borja, R. I.

2014-12-01

Shale is a fine-grained sedimentary rock consisting primarily of clay and silt, and is of particular interest with respect to hydrocarbon production as both a source and seal rock. The deformation and fracture properties of shale depend on the mechanical properties of its basic constituents, including solid clay particles, inclusions such as silt and organics, and multiscale porosity. This paper presents the results of a combined experimental/numerical investigation into the mechanical behavior of shale at the nanoscale. Large grids of nanoindentation tests, spanning various length scales ranging from 200-20000 nanometers deep, were performed on a sample of Woodford shale in both the bedding plane normal (BPN) and bedding plane parallel (BPP) directions. The nanoindentions were performed in order to determine the mechanical properties of the constituent materials in situ as well as those of the highly heterogeneous composite material at this scale. Focused ion beam (FIB) milling and scanning electron microscopy (SEM) were used in conjunction (FIB-SEM) to obtain 2D and 3D images characterizing the heterogeneity of the shale at this scale. The constituent materials were found to be best described as consisting of near micrometer size clay and silt particles embedded in a mixed organic/clay matrix, with some larger (near 10 micrometers in diameter) pockets of organic material evident. Indented regions were identified through SEM, allowing the 200-1000 nanometer deep indentations to be classified according to the constituent materials which they engaged. We use nonlinear finite element modeling to capture results of low-load (on the order of milliNewtons) and high-load (on the order of a few Newtons) nanoindentation tests. Experimental results are used to develop a 3D mechanistic model that interprets the results of nanoindentation tests on specimens of Woodford shale with quantified heterogeneity.

DIALIGN P: fast pair-wise and multiple sequence alignment using parallel processors.

PubMed

Schmollinger, Martin; Nieselt, Kay; Kaufmann, Michael; Morgenstern, Burkhard

2004-09-09

Parallel computing is frequently used to speed up computationally expensive tasks in Bioinformatics. Herein, a parallel version of the multi-alignment program DIALIGN is introduced. We propose two ways of dividing the program into independent sub-routines that can be run on different processors: (a) pair-wise sequence alignments that are used as a first step to multiple alignment account for most of the CPU time in DIALIGN. Since alignments of different sequence pairs are completely independent of each other, they can be distributed to multiple processors without any effect on the resulting output alignments. (b) For alignments of large genomic sequences, we use a heuristics by splitting up sequences into sub-sequences based on a previously introduced anchored alignment procedure. For our test sequences, this combined approach reduces the program running time of DIALIGN by up to 97%. By distributing sub-routines to multiple processors, the running time of DIALIGN can be crucially improved. With these improvements, it is possible to apply the program in large-scale genomics and proteomics projects that were previously beyond its scope.

Spatially resolved nanoscale observations of soil carbon multidecadal persistence

NASA Astrophysics Data System (ADS)

Lutfalla, S.; Chenu, C.; Bernard, S.; Le Guillou, C.; Barré, P.

2015-12-01

Assessing how mineral surfaces, especially at small scale, can protect soil organic carbon (SOC) from biodegradation is crucial. The question we address in this work is whether different mineral species lead to different organo-mineral interactions and stabilize different quantities of SOM and different types of SOC. Here we used the unique opportunity offered by long term bare fallows (BF) to study in situ C dynamics in several fine fractions of a silty loam soil. With no vegetation i.e. no external input of fresh C, the plant-free soil of the Versailles 42 Plots (INRA, France) has been progressively enriched in persistent SOC during the 80 years of BF. Contrasted mineral phases of the clay size fraction were isolated by size fractionation on samples from 5 different dates (0, 10, 22, 52, and 79 years after the beginning of the BF, four field replicates per date). Four fractions were studied: total clays (< 2 μm), and three sub fractions in the clay (fine clay: 0 - 0.05 μm, intermediate clay: 0.05 - 0.2 μm, and coarse clay: 0.2 - 2 μm). X-ray diffraction analyses showed contrasted mineralogies in the fine and intermediate clay (smectite and mixed layered illite/smectite) as opposed to the coarse clay (smectite, illite, kaolinite and mixed layered I/S). We performed CHN elemental analysis and synchrotron based spectroscopy and microscopy (NEXAFS bulk and STXM at the carbon K edge of 280 eV, CLS Saskatoon, Canada) to study the dynamics, the distribution and the chemical speciation of the SOC in these fractions. The quantity of C appears to be stabilized after 50 years of BF, even though the dynamics are different for the three clay fractions. Indeed, coarse and intermediate clays have the same final C content but coarse clays lose more C. Fine clay experiences the highest C losses and displays the highest final C content suggesting that fine clays contained more labile C and more persistent C. In all fractions, C:N ratios are really low (below 8) and are decreasing with time, evidencing the dominant presence of microbial SOC. STXM-NEXAFS data shows that, in the fine and intermediate clay fractions, during the first 50 years of BF all mineral particles are associated with SOC. On the contrary, in the coarse clays, SOC displays more diversity: the chemical signature is more diverse and mineral particles not associated with SOC appear more quickly.

Reduce costs with multimission sequencing and a multimission operations system

NASA Technical Reports Server (NTRS)

Bliss, D. A.; Morales, L. C.

2003-01-01

The paper will then propose extending this multi-mission philosophy to skeleton timeline development, science sequencing, and spacecraft sequencing. Finally, the paper will investigate a multi-mission approach to MOS development.

Efficiency of a Multi-Soil-Layering System on Wastewater Treatment Using Environment-Friendly Filter Materials

PubMed Central

Ho, Chia-Chun; Wang, Pei-Hao

2015-01-01

The multi-soil-layering (MSL) system primarily comprises two parts, specifically, the soil mixture layer (SML) and the permeable layer (PL). In Japan, zeolite is typically used as the permeable layer material. In the present study, zeolite was substituted with comparatively cheaper and more environmentally friendly materials, such as expanded clay aggregates, oyster shells, and already-used granular activated carbon collected from water purification plants. A series of indoor tests indicated that the suspended solid (SS) removal efficiency of granular activated carbon was between 76.2% and 94.6%; zeolite and expanded clay aggregates achieved similar efficiencies that were between 53.7% and 87.4%, and oyster shells presented the lowest efficiency that was between 29.8% and 61.8%. Further results show that the oyster shell system required an increase of wastewater retention time by 2 to 4 times that of the zeolite system to maintain similar chemical oxygen demand (COD) removal efficiency. Among the four MSL samples, the zeolite system and granular activated carbon system demonstrated a stable NH3-N removal performance at 92.3%–99.8%. The expanded clay aggregate system present lower removal performance because of its low adsorption capacity and excessively large pores, causing NO3−-N to be leached away under high hydraulic loading rate conditions. The total phosphorous (TP) removal efficiency of the MSL systems demonstrated no direct correlation with the permeable layer material. Therefore, all MSL samples achieved a TP efficiency of between 92.1% and 99.2%. PMID:25809517

Heterogeneity of organic matter distribution in relation to a transgressive systems tract: Kimmeridge Clay (Jurassic), England

DOE Office of Scientific and Technical Information (OSTI.GOV)

Herbin, J.P.; Muller, C.; Geyssant, J.

1991-03-01

The Kimmeridge clay has been drilled in four continuously cored boreholes put down to sample the organic carbon content of the formation. Three of them sited in the Cleveland basin (Yorkshire) prove over 200 m of strata ranging from Mutabilis to Pectinatus zones; the fourth, completing a 35 km transect, proves the lower part of the Kimmeridge clay of the thinner Eastern England shelf. The results show the total organic carbon content (TOC) increasing by 50% when traced from shelf into the basin where deeper bathymetry and more rapid sedimentation have favored preservation of organic matter. The study of stratigraphicalmore » variation of % TOC enables evaluation of fundamental problems of these cycles in which organic matter is one of the major constituents. Such cycles exist throughout the Jurassic and Lower-Middle Cretaceous sequences but a transgressive systems tract such as that of the Kimmeridgian Stage enables the phenomenon to be studied in detail.« less

Statistic inversion of multi-zone transition probability models for aquifer characterization in alluvial fans

DOE PAGES

Zhu, Lin; Dai, Zhenxue; Gong, Huili; ...

2015-06-12

Understanding the heterogeneity arising from the complex architecture of sedimentary sequences in alluvial fans is challenging. This study develops a statistical inverse framework in a multi-zone transition probability approach for characterizing the heterogeneity in alluvial fans. An analytical solution of the transition probability matrix is used to define the statistical relationships among different hydrofacies and their mean lengths, integral scales, and volumetric proportions. A statistical inversion is conducted to identify the multi-zone transition probability models and estimate the optimal statistical parameters using the modified Gauss–Newton–Levenberg–Marquardt method. The Jacobian matrix is computed by the sensitivity equation method, which results in anmore » accurate inverse solution with quantification of parameter uncertainty. We use the Chaobai River alluvial fan in the Beijing Plain, China, as an example for elucidating the methodology of alluvial fan characterization. The alluvial fan is divided into three sediment zones. In each zone, the explicit mathematical formulations of the transition probability models are constructed with optimized different integral scales and volumetric proportions. The hydrofacies distributions in the three zones are simulated sequentially by the multi-zone transition probability-based indicator simulations. Finally, the result of this study provides the heterogeneous structure of the alluvial fan for further study of flow and transport simulations.« less

Occurrence of Quaternary turbidite deposits in the central South China Sea: Response to global sea-level changes

NASA Astrophysics Data System (ADS)

Liu, Z.; Zhang, X.; Christophe, C.; Peleo-Alampay, A.; Guballa, J. D. S.; Li, P.; Liu, C.

2016-12-01

Terrigenous turbidite layers frequently occur at the upper 150-m-thick sedimentary sequence of Hole U1431D (15º22.54'N, 117 º00.00'E, 4240.5 m water depth), International Ocean Discovery Program (IODP) Expedition 349, near the relict spreading ridge in the central South China Sea. This study implies visual statistics combined with grain size, clay mineralogy, and Nd-Sr isotope analyses to reconstruct the occurrence of these turbidite layers. The age-model of combined calcareous nannofossils, planktonic foraminifers, and paleomagnetism suggests that the sedimentary sequence spans the entire Quaternary with an age of 2.6 Ma at the depth of 150 mcd below the seafloor. Our results show that the turbidite deposits are dominated by silt with sandy silt and silty clay, poorly sorted, and grading upward with erosion base. The occurrence of turbidite layers are highly frequent with about 3.06 layers per meter and an average thickness of 14.64 cm per layer above 96 mcd ( 1.6 Ma), while the lower part turbudite layers are less frequently developed with 1.16 layers per meter and an average thickness of 5.67 cm. Provenance analysis indicates that Taiwan, about 900 km northward to the studied site, is the major source for these terrigenous sediments, implying the long run-out turbidity current activity over the very low-gradient deep-sea plain of the South China Sea. The frequency of the turbidite layer occurrence is well correlated to the Quaternary global sea-level change history, with the high frequency occurred during the lower sea-level stands. Our study suggests that the glacial-interglacial-scale sea-level change has controlled terrigenous sediment input from Taiwan and the northern shelf of the South China Sea during the Quaternary. The increase of turbidite layer frequency since 1.6 Ma in the central South China Sea could be triggered by the enlarged amplitude of sea-level change.

[Development of APSIM (agricultural production systems simulator) and its application].

PubMed

Shen, Yuying; Nan, Zhibiao; Bellotti, Bill; Robertson, Michael; Chen, Wen; Shao, Xinqing

2002-08-01

Soil-crop simulator model is an effective tool for providing decision on agricultural management. APSIM (Agricultural Production Systems Simulator) was developed to simulate the biophysical process in farming system, and particularly in the economic and ecological features of the systems under climatic risk. The current literatures revealed that APSIM could be applied in wide zone, including temperate continental, temperate maritime, sub-tropic and arid climate, and Mediterranean climates, with the soil type of clay, duplex soil, vertisol, silt sandy, silt loam and silt clay loam. More than 20 crops have been simulated well. APSIM is powerful on describing crop structure, crop sequence, yield prediction, and quality control as well as erosion estimation under different planting pattern.

Liquefaction hazard for the region of Evansville, Indiana

USGS Publications Warehouse

Haase, Jennifer S.; Choi, Yoon S.; Nowack, Robert L.; Cramer, Chris H.; Boyd, Oliver S.; Bauer, Robert A.

2011-01-01

Maps of liquefaction hazard for each scenario earthquake present (1) Mean liquefaction potential index at each site, and (2) Probabilities that liquefaction potential index values exceed 5 (threshold for expression of surface liquefaction) and 12 (threshold for lateral spreading). Values for the liquefaction potential index are high in the River alluvium group, where the soil profiles are predominantly sand, while values in the Lacustrine terrace group are lower, owing to the predominance of clay. Liquefaction potential index values in the Outwash terrace group are less consistent because the soil profiles contain highly variable sequences of silty sand, clayey sand, and sandy clay, justifying the use of the Monte Carlo procedure to capture the consequences of this complexity.

Novel approach for identification of influenza virus host range and zoonotic transmissible sequences by determination of host-related associative positions in viral genome segments.

PubMed

Kargarfard, Fatemeh; Sami, Ashkan; Mohammadi-Dehcheshmeh, Manijeh; Ebrahimie, Esmaeil

2016-11-16

Recent (2013 and 2009) zoonotic transmission of avian or porcine influenza to humans highlights an increase in host range by evading species barriers. Gene reassortment or antigenic shift between viruses from two or more hosts can generate a new life-threatening virus when the new shuffled virus is no longer recognized by antibodies existing within human populations. There is no large scale study to help understand the underlying mechanisms of host transmission. Furthermore, there is no clear understanding of how different segments of the influenza genome contribute in the final determination of host range. To obtain insight into the rules underpinning host range determination, various supervised machine learning algorithms were employed to mine reassortment changes in different viral segments in a range of hosts. Our multi-host dataset contained whole segments of 674 influenza strains organized into three host categories: avian, human, and swine. Some of the sequences were assigned to multiple hosts. In point of fact, the datasets are a form of multi-labeled dataset and we utilized a multi-label learning method to identify discriminative sequence sites. Then algorithms such as CBA, Ripper, and decision tree were applied to extract informative and descriptive association rules for each viral protein segment. We found informative rules in all segments that are common within the same host class but varied between different hosts. For example, for infection of an avian host, HA14V and NS1230S were the most important discriminative and combinatorial positions. Host range identification is facilitated by high support combined rules in this study. Our major goal was to detect discriminative genomic positions that were able to identify multi host viruses, because such viruses are likely to cause pandemic or disastrous epidemics.

Atlantic multi-decadal oscillation influence on weather regimes over Europe and the Mediterranean in spring and summer

NASA Astrophysics Data System (ADS)

Zampieri, M.; Toreti, A.; Schindler, A.; Scoccimarro, E.; Gualdi, S.

2017-04-01

We analyze the influence of the Atlantic sea surface temperature multi-decadal variability on the day-by-day sequence of large-scale atmospheric circulation patterns (i.e. the ;weather regimes;) over the Euro-Atlantic region. In particular, we examine of occurrence of weather regimes from 1871 to present. This analysis is conducted by applying a clustering technique on the daily mean sea level pressure field provided by the 20th Century Reanalysis project, which was successfully applied in other studies focused on the Atlantic Multi-decadal Oscillation (AMO). In spring and summer, results show significant changes in the frequencies of certain weather regimes associated with the phase shifts of the AMO. These changes are consistent with the seasonal surface pressure, precipitation, and temperature anomalies associated with the AMO shifts in Europe.

Rapid growing clay coatings to reduce the fire threat of furniture.

PubMed

Kim, Yeon Seok; Li, Yu-Chin; Pitts, William M; Werrel, Martin; Davis, Rick D

2014-02-12

Layer-by-layer (LbL) assembly coatings reduce the flammability of textiles and polyurethane foam but require extensive repetitive processing steps to produce the desired coating thickness and nanoparticle fire retardant content that translates into a fire retardant coating. Reported here is a new hybrid bi-layer (BL) approach to fabricate fire retardant coatings on polyurethane foam. Utilizing hydrogen bonding and electrostatic attraction along with the pH adjustment, a fast growing coating with significant fire retardant clay content was achieved. This hybrid BL coating exhibits significant fire performance improvement in both bench scale and real scale tests. Cone calorimetry bench scale tests show a 42% and 71% reduction in peak and average heat release rates, respectively. Real scale furniture mockups constructed using the hybrid LbL coating reduced the peak and average heat release rates by 53% and 63%, respectively. This is the first time that the fire safety in a real scale test has been reported for any LbL technology. This hybrid LbL coating is the fastest approach to develop an effective fire retardant coating for polyurethane foam.

SVM-Fold: a tool for discriminative multi-class protein fold and superfamily recognition

PubMed Central

Melvin, Iain; Ie, Eugene; Kuang, Rui; Weston, Jason; Stafford, William Noble; Leslie, Christina

2007-01-01

Background Predicting a protein's structural class from its amino acid sequence is a fundamental problem in computational biology. Much recent work has focused on developing new representations for protein sequences, called string kernels, for use with support vector machine (SVM) classifiers. However, while some of these approaches exhibit state-of-the-art performance at the binary protein classification problem, i.e. discriminating between a particular protein class and all other classes, few of these studies have addressed the real problem of multi-class superfamily or fold recognition. Moreover, there are only limited software tools and systems for SVM-based protein classification available to the bioinformatics community. Results We present a new multi-class SVM-based protein fold and superfamily recognition system and web server called SVM-Fold, which can be found at . Our system uses an efficient implementation of a state-of-the-art string kernel for sequence profiles, called the profile kernel, where the underlying feature representation is a histogram of inexact matching k-mer frequencies. We also employ a novel machine learning approach to solve the difficult multi-class problem of classifying a sequence of amino acids into one of many known protein structural classes. Binary one-vs-the-rest SVM classifiers that are trained to recognize individual structural classes yield prediction scores that are not comparable, so that standard "one-vs-all" classification fails to perform well. Moreover, SVMs for classes at different levels of the protein structural hierarchy may make useful predictions, but one-vs-all does not try to combine these multiple predictions. To deal with these problems, our method learns relative weights between one-vs-the-rest classifiers and encodes information about the protein structural hierarchy for multi-class prediction. In large-scale benchmark results based on the SCOP database, our code weighting approach significantly improves on the standard one-vs-all method for both the superfamily and fold prediction in the remote homology setting and on the fold recognition problem. Moreover, our code weight learning algorithm strongly outperforms nearest-neighbor methods based on PSI-BLAST in terms of prediction accuracy on every structure classification problem we consider. Conclusion By combining state-of-the-art SVM kernel methods with a novel multi-class algorithm, the SVM-Fold system delivers efficient and accurate protein fold and superfamily recognition. PMID:17570145

Precipitation history of the central Atacama Desert since the Miocene as reconstructed from clay pan records of the Costal Cordillera/ N Chile

NASA Astrophysics Data System (ADS)

Wennrich, V.; Melles, M.; Diederich, J. L.; Fernández Galego, E.; Ritter, B.; Brill, D.; Niemann, K.; Rolf, C.; Dunai, T. J.

2017-12-01

Hyperaridity is a major limitation of Earth-surface processes and biological activity in the Atacama Desert of N Chile, one of the oldest and the driest deserts on Earth. But even the hyperarid core of the Atacama Desert of N Chile has experienced sever precipitation events, e.g., during the flash floods in 2015. On geological timescales, the overall aridity that is postulated to have lasted at least since the early Miocene was punctuated by distinct pluvial events. Such wetter conditions, e.g. during the Miocene, caused widespread lake-formation in the Central Depression and Coastal Cordillera, but also caused amplified surface processes, changes in vegetation dynamics, and enabled the dispersal of species. Unfortunately, due to the limited number and heterogeneous appearance of climate archives from the central Atacama, it's longer-scale precipitation history is still a matter of controversy. This study aims to study continuous longterm (Pleistocene-Miocene) paleoclimatic and environmental records from the hyperarid core of the Atacama Desert covering the last >10 Ma. Therefor we investigate clay pans records from endorheic basins in the Coastal Cordillera mostly formed by blocking of drainage by tectonic movement. The clay pans under study are located along a latitudinal transect across the hyperarid core of the Atacama, and thus, are assumed to have recorded local and regional precipitation variations on different timescales. The investigated sequences exhibit significant changes in the sedimentological, geochemical, and mineralogical properties due to changes in precipitation, but also in the weathering and erosion in the catchments. Diatom and phytolith remains preserved in these records clearly point to significant water bodies during the wettest periods and a significant vegetation cover. The results shed a new light on the timing, frequency, and the driving mechanisms of the intervening pluvial phases.

Soil development over millennial timescales - a comparison of soil chronosequences of different climates and lithologies

NASA Astrophysics Data System (ADS)

Sauer, D.; Schülli-Maurer, I.; Wagner, S.; Scarciglia, F.; Sperstad, R.; Svendgård-Stokke, S.; Sørensen, R.; Schellmann, G.

2015-07-01

This paper reports soil development over time in different climates, on time-scales ranging from a few thousand to several hundred thousand years. Changes in soil properties over time, underlying soil-forming processes and their rates are presented. The paper is based on six soil chronosequences, i.e. sequences of soils of different age that are supposed to have developed under the similar conditions with regard to climate, vegetation and other living organisms, relief and parent material. The six soil chronosequences are from humid-temperate, Mediterranean and semi-arid climates. They are compared with regard to soil thickness increase, changes in soil pH, formation of pedogenic iron oxides (expressed as Fed/Fet ratios), clay formation, dust influx (both reflected in clay/silt ratios), and silicate weathering and leaching of base cations(expressed as (Ca+Mg+K+Na)/Al molar ratios) over time. This comparison reveals that the increase of solum thickness with time can be best described by logarithmic equations in all three types of climates. Fed/Fet ratios (proportion of pedogeniciron Fed compared to total iron Fet) reflects the transformation of iron in primary minerals into pedogeniciron. This ratio usually increases with time, except for regions, where the influx of dust (having low Fed/Fet ratios) prevails over the process of pedogeniciron oxide formation, which is the case in the Patagonian chronosequences. Dust influx has also a substantial influence on the time courses of clay/silt ratios and on element indices of silicate weathering. Using the example of a 730 kasoil chronosequence from southern Italy, the fact that soils of long chronosequences inevitably experienced major environmental changes is demonstrated, and, consequentially a modified definition of requirements for soil chronosequences is suggested. Moreover, pedogenic thresholds, feedback systems and progressive versus regressive processes identified in the soil chronosequences are discussed.

Paragenesis and reservoir quality within a shallow combination trap: Central West Virginia

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bell, D.A.; Siegrist, H.G. Jr.; Buurman, J.D.

1993-12-01

Sandstone character and reservoir quality of the Lower Mississippian Pocono Big Injun sandstone were examined in Granny Creek-Stockly field, Clay County, West Virginia. Sixty-three samples from 6 wells were analyzed using transmitted light, x-ray diffraction, and scanning electron microscopy techniques. The Pocono Big Injun formation is divided into four [open quotes]sands[close quotes] (Injun 1 through 4) based on composition and hydrocarbon productivity. The Injun 1 sand is a fine-grained, carbonate-cemented litharenite below the oil-producing zone. The oil-productive Injun 2 and 3 sands are well sorted, fine-grained litharenites which contain more authigenic and allogenic clay minerals than adjacent sands. These sandsmore » have produced more than 3.4 million bbl of oil from the Granny Creek part of the field since 1925. The Injun 4 sand is generally a coarse-grained sublitharenite with marginal gas production limited to the uppermost section of the sand. The paragenetic sequence consists of (1) minor quartz overgrowths, (2) illite and chlorite grain coatings, (3) quartz overgrowths, (4) early carbonate, (5) kaolinite, (6) calcite, (7) dolomite, and (8) pyrite. Porosity and permeability were not preserved once paragenesis progressed past the kaolinite stage. Porosity and permeability are variably preserved when steps in the paragenetic sequence are absent within the Pocono Group. Where any porosity is identified within the Pocono sandstones, primary porosity is dominant. However, secondary porosity and microporosity in clay-rich intervals are also important.« less

Predicting Survival within the Lung Cancer Histopathological Hierarchy Using a Multi-Scale Genomic Model of Development

PubMed Central

Liu, Hongye; Kho, Alvin T; Kohane, Isaac S; Sun, Yao

2006-01-01

Background The histopathologic heterogeneity of lung cancer remains a significant confounding factor in its diagnosis and prognosis—spurring numerous recent efforts to find a molecular classification of the disease that has clinical relevance. Methods and Findings Molecular profiles of tumors from 186 patients representing four different lung cancer subtypes (and 17 normal lung tissue samples) were compared with a mouse lung development model using principal component analysis in both temporal and genomic domains. An algorithm for the classification of lung cancers using a multi-scale developmental framework was developed. Kaplan–Meier survival analysis was conducted for lung adenocarcinoma patient subgroups identified via their developmental association. We found multi-scale genomic similarities between four human lung cancer subtypes and the developing mouse lung that are prognostically meaningful. Significant association was observed between the localization of human lung cancer cases along the principal mouse lung development trajectory and the corresponding patient survival rate at three distinct levels of classical histopathologic resolution: among different lung cancer subtypes, among patients within the adenocarcinoma subtype, and within the stage I adenocarcinoma subclass. The earlier the genomic association between a human tumor profile and the mouse lung development sequence, the poorer the patient's prognosis. Furthermore, decomposing this principal lung development trajectory identified a gene set that was significantly enriched for pyrimidine metabolism and cell-adhesion functions specific to lung development and oncogenesis. Conclusions From a multi-scale disease modeling perspective, the molecular dynamics of murine lung development provide an effective framework that is not only data driven but also informed by the biology of development for elucidating the mechanisms of human lung cancer biology and its clinical outcome. PMID:16800721

High Fidelity and Multiscale Algorithms for Collisional-radiative and Nonequilibrium Plasmas (Briefing Charts)

DTIC Science & Technology

2014-07-01

of models for variable conditions: – Use implicit models to eliminate constraint of sequence of fast time scales: c, ve, – Price to pay: lack...collisions: – Elastic – Bragiinski terms – Inelastic – warning! Rates depend on both T and relative velocity – Multi-fluid CR model from...merge/split for particle management, efficient sampling, inelastic collisions … – Level grouping schemes of electronic states, for dynamical coarse

A Multicultural Sequence of Humanities Electives.

ERIC Educational Resources Information Center

Anderson, Gwendolyn; Ewing, Dessa

In order to promote multi-cultural literacy among its students, Delaware County Community College (DCCC) developed a multi-cultural sequence of humanities electives. The sequence emerged as a response to the predominantly White student body's lack of knowledge or curiosity about other cultures. The first of the four courses in the sequence is…

A New Method for Setting Calculation Sequence of Directional Relay Protection in Multi-Loop Networks

NASA Astrophysics Data System (ADS)

Haijun, Xiong; Qi, Zhang

2016-08-01

Workload of relay protection setting calculation in multi-loop networks may be reduced effectively by optimization setting calculation sequences. A new method of setting calculation sequences of directional distance relay protection in multi-loop networks based on minimum broken nodes cost vector (MBNCV) was proposed to solve the problem experienced in current methods. Existing methods based on minimum breakpoint set (MBPS) lead to more break edges when untying the loops in dependent relationships of relays leading to possibly more iterative calculation workloads in setting calculations. A model driven approach based on behavior trees (BT) was presented to improve adaptability of similar problems. After extending the BT model by adding real-time system characters, timed BT was derived and the dependency relationship in multi-loop networks was then modeled. The model was translated into communication sequence process (CSP) models and an optimization setting calculation sequence in multi-loop networks was finally calculated by tools. A 5-nodes multi-loop network was applied as an example to demonstrate effectiveness of the modeling and calculation method. Several examples were then calculated with results indicating the method effectively reduces the number of forced broken edges for protection setting calculation in multi-loop networks.

Integrated palynology and sequence stratigraphy of the upper Cretaceous (Maastrichtian) strata, Rio Grande Embayment, Texas, using well, outcrop, and seismic data

NASA Astrophysics Data System (ADS)

Mahmoud, Salah El-Din Ragab

Numerous nomenclature problems surround the Campanian and Maastrichtian strata of the Rio Grande Embayment. Sellards et al. (1932) and Stephenson et al. (1942) placed the Upson Clay and San Miguel Formation in the Taylor Group (Campanian). These workers assigned the overlying Olmos Coal and the Escondido Formation to the Navarro Group (Maastrichtian). Pessagno (1969, p. 90--91) tentatively included the Upson Clay, the San Miguel Formation, the Olmos Coal, and the Escondido Formation in the Navarro Group, but noted that these strata are lithologically dissimilar to those of the type Navarro Group in Navarro County (northeast Texas). He (ibid, p. 91) suggested that "---Future workers should consider the possibility of excluding the entire sequence from the Navarro Group. It is perhaps more closely related to the Difunta Group of Mexico or deserves a group name of its own." Pessagno (1967; 1969, p. 91--92) utilized planktonic foraminiferal biostratigraphic data to determine (1) that the Upson Clay and San Miguel Formation are assignable to the lower Maastrichtian and (2) that the Escondido Formation is assignable to the upper Maastrichtian. The present investigation attempts to build on the chronostratigraphic framework established by Pessagno (1967, 1969). Palynology is used for the first time in this report to generate biostratigraphic, chronostratigraphic, and paleoecological data for the Maastrichtian strata in the study area. New palynological data, integrated with existing planktonic foraminifera and megafossils, indicate that San Miguel Formation and Olmos Coal are of Maastrichtian age. Tying results with seismic data results in dating interpreted sequence boundaries to be within the time interval of 83 and 63 MA. Five seismic facies are delineated and a rate of sediment supply higher than the rate of subsidence during a prolonged progradational episode is suggested in the study area. Three-dimensional seismic data are interpreted in terms of the structure and hydrocarbon potential. Analysis of structural elements indicates northwest-southeast compressional forces resulting from sediment loading. Parasequence-level mapping was carried out and paleogeographic and depositional history was inferred and used in interpreting systems tracts. The study on San Miguel Formation by Weise (1980) was revisited using sequence stratigraphic techniques.

Settlement of the USS Arizona, Pearl Harbor, Hawaii

USGS Publications Warehouse

Carkin, Brad A.; Kayen, Robert E.

2013-01-01

The U.S. Geological Survey, in collaboration with the National Park Service Submerged Resources Center, undertook investigations at the USS Arizona Memorial at Pearl Harbor, Hawaii, in 2002, 2003, and 2005 to characterize geological factors affecting the deterioration and movement of the hull of the USS Arizona. Since sinking on the morning of December 7, 1941, the hull of the USS Arizona has been slowly but steadily disappearing below the surface of Pearl Harbor. Continuous sediment coring at three of four locations around the hull of the Arizona was only partially successful, but it was sufficient to identify a varied sedimentary substrate beneath the hull. A boring near the stern reveals a thick, continuous sequence of soft, gray clay to the bottom of the boring. In contrast, borings near the bow and starboard side, below about 5 meters subbottom depth, indicate the presence of very stiff, brown clay and coral debris and an absence of soft clay. Multisensor core logger scanning of the recovered cores distinguishes the lower density of the soft, gray clay at the stern from the higher density of the stiff, brown clays and coral debris at the bow and starboard side. Uniaxial consolidation testing of the soft gray clay indicates a normally consolidated sequence, whereas the stiff, brown clay and coral debris are overconsolidated. Profiles of shear wave velocity vs. depth obtained through spectral analysis of interface wave testing around the perimeter of the hull in 2005 identified areas of higher velocity, stiffer sediment at the bow and starboard side, which correspond to the dense, stiff clay recovered near the bow and starboard borings. Low shear-wave velocities at the port midship and quarter of the hull correlate with the lower density, softer sediment recovered from the boring at the stern. Cross sections of the subbottom of the Memorial combine results from the sediment borings and geophysical surveys and depict a wedge of soft clay unconformably overlying the stiff clays and coral debris beneath the aft half of the USS Arizona and thickening toward the stern. The 2008 position of the hull has been documented using both tide-based and differential Global Positioning System (GPS) measuring systems. Analysis of historical and recent photographs was done to create a record of settlement from the time of sinking in 1941 to the present. By examining shadows in suitable photos, the sun azimuth, local time of day, and tide levels were determined to derive tide-adjusted and sea-level-rise-corrected elevations for structures on the hull and from these elevations to obtain settlement and tilt trends. The settlement trends, most complete for barbette 3, have two components. An early, nonlinear component ends on December 9, 1941, and represents the initial penetration and displacement of the bottom sediment by the hull. A linear, long-term trend of normal consolidation continues to the present day. Long-term settlement rates are greatest at the stern and decrease linearly to the midship, showing that the aft half of the hull is moving as an intact, rigid body. The recent rate of settlement at the stern is about 3.5 mm/year; rates at the starboard midship and forward part of the hull are less than one-third of the stern rate. The aft half of the USS Arizona hull presently tilts about 2 degrees to port, an increase of at least 1.5 degrees since the initial sinking of the ship. The results of this study identify differential settlement of the Arizona hull, due to the wedge of soft clay underlying the aft half of the hull, as the cause of the movement of the hull beneath the surface of Pearl Harbor. Calculation of sediment consolidation using lab-determined properties of the soft clay demonstrates that the observed settlements can be reproduced by projecting appropriate clay thicknesses beneath the hull. Several of the high-quality photographs analyzed for the historical settlement analysis highlight some of the limitations of this retrospective technique for determining tide-based elevations. In these cases, calculated structure elevations do not conform to the settlement trend, indicating that there can be complicating factors affecting the interpretation of the photos. Conflicting dates for events during the salvage operations were also encountered.

Hollow Cylinder Tests on Boom Clay: Modelling of Strain Localization in the Anisotropic Excavation Damaged Zone

NASA Astrophysics Data System (ADS)

François, Bertrand; Labiouse, Vincent; Dizier, Arnaud; Marinelli, Ferdinando; Charlier, Robert; Collin, Frédéric

2014-01-01

Boom Clay is extensively studied as a potential candidate to host underground nuclear waste disposal in Belgium. To guarantee the safety of such a disposal, the mechanical behaviour of the clay during gallery excavation must be properly predicted. In that purpose, a hollow cylinder experiment on Boom Clay has been designed to reproduce, in a small-scale test, the Excavation Damaged Zone (EDZ) as experienced during the excavation of a disposal gallery in the underground. In this article, the focus is made on the hydro-mechanical constitutive interpretation of the displacement (experimentally obtained by medium resolution X-ray tomography scanning). The coupled hydro-mechanical response of Boom Clay in this experiment is addressed through finite element computations with a constitutive model including strain hardening/softening, elastic and plastic cross-anisotropy and a regularization method for the modelling of strain localization processes. The obtained results evidence the directional dependency of the mechanical response of the clay. The softening behaviour induces transient strain localization processes, addressed through a hydro-mechanical second grade model. The shape of the obtained damaged zone is clearly affected by the anisotropy of the materials, evidencing an eye-shaped EDZ. The modelling results agree with experiments not only qualitatively (in terms of the shape of the induced damaged zone), but also quantitatively (for the obtained displacement in three particular radial directions).

pH profile of the adsorption of nucleotides onto montmorillonite. II - Adsorption and desorption of 5-prime-AMP in iron-calcium montmorillonite systems

NASA Technical Reports Server (NTRS)

Banin, A.; Lawless, J. G.; Mazzurco, J.; Church, F. M.; Margulies, L.; Orenberg, J. B.

1985-01-01

The interaction of 5-prime-AMP with montmorillonite saturated with various ratios of two metals found ubiquitously on the surface of earth, that is, iron and calcium, is investigated. Adsorption and desorption of the nucleotide were studied in the pH range of 2-12 at three levels of addition: 0.080, 0.268 and 0.803 mmole 5-prime-AMP per gram of clay. Two desorption stages were employed - H2O wash and NaOH extraction (pH = 12.0). 5-prime-AMP was preferentially adsorbed on the Fe-containing clays relative to the Ca clay. The nucleotide was fully recovered by the two desorption stages, mostly by the NaOH extraction. The evidence at hand indicates that 5-prime-AMP reaction with clay is affected by electrostatic interactions involving both attraction and repulsion forces. Some specific adsorption, possibly the result of covalent bonding and complex formation with the adsorbed ion, cannot be ruled out for iron but does not appear to operate for calcium. Changes in pH cause varying degrees of attaction and repulsion of 5-prime-AMP and may have been operating on the primitive earth, leading to sequences of adsorption and release of this biomolecule.

Micromorphological investigations of the Late Quaternary loess-paleosol sequences of the Kashmir Valley, India

NASA Astrophysics Data System (ADS)

Dar, Reyaz Ahmad; Chandra, Rakesh; Romshoo, Shakil Ahmad; Kowser, Nazia

2015-11-01

The loess-paleosol sequences of the Karewa Group preserve a valuable repository of the Late Quaternary climatic changes and the landscape evolution history of the Karewa Basin of Kashmir Valley in their lithological and pedogenic records. Three representative loess-paleosol sections at Shankerpora (SP), Khan Sahib (KS) and Pattan (PT) localities were chosen for detailed lithostratigraphic fieldwork and micromorphological observations of thin sections. Lithostratigraphic analysis revealed lateral and vertical variation in thickness and number of paleosol profiles from south-west to north-west of the Karewa Basin suggesting the availability of land-surface for periodic loess deposition. The SP section is marked by 6 (SP-S6, S7, S8, S9, S10, S12), KS section by 3 (KS-S2, S4, S5) and PT section by 2 (PT-S1, S3) thick mature paleosol profiles. Theses paleosols have well developed 'Ah' and 'Btk' horizons representing prolonged land-surface stability when pedogenic processes outpace loess deposition. On the other hand comparatively thin to thick paleosol profiles represent weak to moderate pedogenic maturity indicating short stratigraphic breaks with rapid loess deposition. Micromorphological observations of thin sections suggested that clay illuviation and CaCO3 accumulation have operated within the paleosol profiles. CaCO3 features are often associated with clay coatings suggesting decalcification of carbonates followed by clay illuviation. Pedogenic CaCO3 probably resulted from the precipitation of the soil solution near the average depth of wetting front. The pedogenic CaCO3, illuvial clay, mottles, iron manganese features, pedal microstructure and blocky aggregates reveal variation in the pedogenic maturity among and within the loess-paleosol sections. The morphological (both micro- and macro-morphological) attributes of loess-paleosols suggest variation of climatic conditions during the Late Quaternary period in the Karewa Basin of Kashmir Valley, India.

Deglaciation of the James Bay Lowlands and Northern Abitibi: Insights on Late-Glacial Ice Readvances and Drainage of Glacial Lake Ojibway

NASA Astrophysics Data System (ADS)

Roy, M.; Veillette, J. J.; Dell'Oste, F.

2008-12-01

Deglaciation in the James Bay region was marked by the scission of the Laurentide ice sheet margin into the Hudson dome to the west and the New-Quebec dome to the east, which subsequently retreated northward, in contact with the waters of glacial Lake Ojibway. Previous work based on air photo-interpretation and field observations indicate that ice retreat in the region was highly dynamic, with the occurrence of at least three ice readvances into the basin of Lake Objiway prior to the final deglaciation, and the incursion of the post- glacial Tyrrell Sea at ~8 ka (Hardy, 1976). Our investigations of stratigraphic sections exposed along the Harricana, Nottaway, Broadback, and Rupert rivers in the lowlands of Quebec indicate that only part of these events are preserved in these sedimentary sequences. The base of the late-glacial sequence generally consists of a carbonate-bearing clayey readvance till that lies on older tills of the last glacial cycle, or truncate Lake Ojibway glaciolacustrine sediments. None of the sections showed more than one till of the three (Cochrane I, Rupert, Cochrane II) readvances documented in the region. Nonetheless, an extensive Ojibway sequence located just south from the lowlands shows three intervals with significant increases in detrital carbonate and coarsening of the varve sequence that can be linked with these late-glacial surges. In the lowlands, the readvance till is commonly capped by a thick sequence of Ojibway varves. The contact between the glaciolacustrine sediments and the overlying Tyrrell Sea marine deposits is marked by a ~50 cm-thick horizon composed at the bottom of thinly laminated reddish and grey silt beds containing abundant rounded clay balls, overlain by coarser silts and fine sands with disseminated clasts. This horizon is here interpreted to reflect the abrupt drainage of Lake Ojibway. Recent radiocarbon dating of mollusks and foraminifers from the uppermost part of this horizon yielded ages of ~7.7 ka and ~8.0 ka. These results thus identify the James Bay axis as an important pathway through which glacial Lake Ojibway waters drained shortly before the marine incursion. Further south, in the Abitibi region, the flat-lying Ojibway clay plains show former lake shores (wave-cut benches) incised into the glaciolacustrine sediments, thereby suggesting abrupt lowering of the Ojibway lake level (Thibaudeau and Veillette, 2005). Nearby stratigraphic exposures of varved clays contain a ~30-40 cm-thick bed consisting of massive silts and fine sands that also suggests some kind of lowering and drainage of the lake waters. The paleoecological content of these coarser horizons and bounding glaciolacustrine clays are currently being investigated for further analyses and radiocarbon dating. The results should provide additional information on the timing of these low lake levels, and their possible link with the drainage horizon documented in the James Bay lowlands.

Mont Terri Underground Rock Laboratory, Switzerland-Research Program And Key Results

NASA Astrophysics Data System (ADS)

Nussbaum, C. O.; Bossart, P. J.

2012-12-01

Argillaceous formations generally act as aquitards because of their low hydraulic conductivities. This property, together with the large retention capacity of clays for cationic contaminants and the potential for self-sealing, has brought clay formations into focus as potential host rocks for the geological disposal of radioactive waste. Excavated in the Opalinus Clay formation, the Mont Terri underground rock laboratory in the Jura Mountains of NW Switzerland is an important international test site for researching clay formations. Research is carried out in the underground facility, which is located adjacent to the security gallery of the Mont Terri motorway tunnel. Fifteen partners from European countries, USA, Canada and Japan participate in the project. The objectives of the research program are to analyze the hydrogeological, geochemical and rock mechanical properties of the Opalinus Clay, to determine the changes induced by the excavation of galleries and by heating of the rock formation, to test sealing and container emplacement techniques and to evaluate and improve suitable investigation techniques. For the safety of deep geological disposal, it is of key importance to understand the processes occurring in the undisturbed argillaceous environment, as well as the processes in a disturbed system, during the operation of the repository. The objectives are related to: 1. Understanding processes and mechanisms in undisturbed clays and 2. Experiments related to repository-induced perturbations. Experiments of the first group are dedicated to: i) Improvement of drilling and excavation technologies and sampling methods; ii) Estimation of hydrogeological, rock mechanical and geochemical parameters of the undisturbed Opalinus Clay. Upscaling of parameters from laboratory to in situ scale; iii) Geochemistry of porewater and natural gases; evolution of porewater over time scales; iv) Assessment of long-term hydraulic transients associated with erosion and thermal scenarios and v) Evaluation of diffusion and retention parameters for long-lived radionuclides. Experiments related to repository-induced perturbations are focused on: i) Influence of rock liner on the disposal system and the buffering potential of the host rock; ii) Self-sealing processes in the excavation damaged zone; iii) Hydro-mechanical coupled processes (e.g. stress redistributions and pore pressure evolution during excavation); iv) Thermo-hydro-mechanical-chemical coupled processes (e.g. heating of bentonite and host rock) and v) Gas-induced transport of radionuclides in porewater and along interfaces in the engineered barrier system. A third research direction is to demonstrate the feasibility of repository construction and long-term safety after repository closure. Demonstration experiments can contribute to improving the reliability of the scientific basis for the safety assessment of future geological repositories, particularly if they are performed on a large scale and with a long duration. These experiments include the construction and installation of engineered barriers on a 1:1 scale: i) Horizontal emplacement of canisters; ii) Evaluation of the corrosion of container materials; repository re-saturation; iii) Sealing of boreholes and repository access tunnels and iv) Long-term monitoring of the repository. References Bossart, P. & Thury, M. (2008): Mont Terri Rock Laboratory. Project, Programme 1996 to 2007 and Results. - Rep. Swiss Geol. Surv. 3.

Design and characterization of a composite material based on Sr(II)-loaded clay nanotubes included within a biopolymer matrix.

PubMed

Del Buffa, Stefano; Bonini, Massimo; Ridi, Francesca; Severi, Mirko; Losi, Paola; Volpi, Silvia; Al Kayal, Tamer; Soldani, Giorgio; Baglioni, Piero

2015-06-15

This paper reports on the preparation, characterization, and cytotoxicity of a hybrid nanocomposite material made of Sr(II)-loaded Halloysite nanotubes included within a biopolymer (3-polyhydroxybutyrate-co-3-hydroxyvalerate) matrix. The Sr(II)-loaded inorganic scaffold is intended to provide mechanical resistance, multi-scale porosity, and to favor the in-situ regeneration of bone tissue thanks to its biocompatibility and bioactivity. The interaction of the hybrid system with the physiological environment is mediated by the biopolymer coating, which acts as a binder, as well as a diffusional barrier to the Sr(II) release. The degradation of the polymer progressively leads to the exposure of the Sr(II)-loaded Halloysite scaffold, tuning its interaction with osteogenic cells. The in vitro biocompatibility of the composite was demonstrated by cytotoxicity tests on L929 fibroblast cells. The results indicate that this composite material could be of interest for multiple strategies in the field of bone tissue engineering. Copyright © 2015 Elsevier Inc. All rights reserved.

a Fast Segmentation Algorithm for C-V Model Based on Exponential Image Sequence Generation

NASA Astrophysics Data System (ADS)

Hu, J.; Lu, L.; Xu, J.; Zhang, J.

2017-09-01

For the island coastline segmentation, a fast segmentation algorithm for C-V model method based on exponential image sequence generation is proposed in this paper. The exponential multi-scale C-V model with level set inheritance and boundary inheritance is developed. The main research contributions are as follows: 1) the problems of the "holes" and "gaps" are solved when extraction coastline through the small scale shrinkage, low-pass filtering and area sorting of region. 2) the initial value of SDF (Signal Distance Function) and the level set are given by Otsu segmentation based on the difference of reflection SAR on land and sea, which are finely close to the coastline. 3) the computational complexity of continuous transition are successfully reduced between the different scales by the SDF and of level set inheritance. Experiment results show that the method accelerates the acquisition of initial level set formation, shortens the time of the extraction of coastline, at the same time, removes the non-coastline body part and improves the identification precision of the main body coastline, which automates the process of coastline segmentation.

The influence of shale depositional fabric on the kinetics of hydrocarbon generation through control of mineral surface contact area on clay catalysis

NASA Astrophysics Data System (ADS)

Rahman, Habibur M.; Kennedy, Martin; Löhr, Stefan; Dewhurst, David N.; Sherwood, Neil; Yang, Shengyu; Horsfield, Brian

2018-01-01

Accurately assessing the temperature and hence the depth and timing of hydrocarbon generation is a critical step in the characterization of a petroleum system. Clay catalysis is a potentially significant modifier of hydrocarbon generation temperature, but experimental studies of clay catalysis show inconsistent or contradictory results. This study tests the hypothesis that source rock fabric itself is an influence on clay mineral catalysis as it controls the extent to which organic matter and clay minerals are physically associated. Two endmember clay-organic fabrics distinguish the source rocks studied: (1) a particulate fabric where organic matter is present as discrete, >5 μm particles and (2) a nanocomposite fabric in which amorphous organic matter is associated with clay mineral surfaces at sub-micron scale. High-resolution electron imaging and bulk geochemical characterisation confirm that samples of the Miocene Monterey Formation (California) are representative of the nanocomposite source rock endmember, whereas samples from the Permian Stuart Range Formation (South Australia) represent the particulate source rock endmember. Kinetic experiments are performed on paired whole rock and kerogen isolate samples from these two formations using open system, non-isothermal pyrolysis at three different heating rates (0.7, 2 and 5 K/min) to determine the effects of the different shale fabrics on hydrocarbon generation kinetics. Extrapolation to a modelled geological heating rate shows a 20 °C reduction in the onset temperature of hydrocarbon generation in Monterey Formation whole rock samples relative to paired kerogen isolates. This result is consistent with the Monterey Formations's nanocomposite fabric where clay catalysis can proceed because reactive clay minerals are intimately associated with organic matter. By contrast, there is no significant difference in the modelled hydrocarbon generation temperature of paired whole rock and kerogen isolates from the Stuart Range Formation. This is consistent with its particulate fabric, where relatively large, discrete organic particles have limited contact with the mineral matrix and the clay minerals are mainly diagenetic and physically segregated within pores. While heating rate may have a control on mineral matrix effects, this result shows that the extent to which organic matter and clay minerals are physically associated could have a significant effect on the timing of hydrocarbon generation, and is a function of the depositional environment and detrital vs diagenetic origin of clay minerals in source rocks.

Exploiting sequence similarity to validate the sensitivity of SNP arrays in detecting fine-scaled copy number variations.

PubMed

Wong, Gerard; Leckie, Christopher; Gorringe, Kylie L; Haviv, Izhak; Campbell, Ian G; Kowalczyk, Adam

2010-04-15

High-density single nucleotide polymorphism (SNP) genotyping arrays are efficient and cost effective platforms for the detection of copy number variation (CNV). To ensure accuracy in probe synthesis and to minimize production costs, short oligonucleotide probe sequences are used. The use of short probe sequences limits the specificity of binding targets in the human genome. The specificity of these short probeset sequences has yet to be fully analysed against a normal reference human genome. Sequence similarity can artificially elevate or suppress copy number measurements, and hence reduce the reliability of affected probe readings. For the purpose of detecting narrow CNVs reliably down to the width of a single probeset, sequence similarity is an important issue that needs to be addressed. We surveyed the Affymetrix Human Mapping SNP arrays for probeset sequence similarity against the reference human genome. Utilizing sequence similarity results, we identified a collection of fine-scaled putative CNVs between gender from autosomal probesets whose sequence matches various loci on the sex chromosomes. To detect these variations, we utilized our statistical approach, Detecting REcurrent Copy number change using rank-order Statistics (DRECS), and showed that its performance was superior and more stable than the t-test in detecting CNVs. Through the application of DRECS on the HapMap population datasets with multi-matching probesets filtered, we identified biologically relevant SNPs in aberrant regions across populations with known association to physical traits, such as height, covered by the span of a single probe. This provided empirical confirmation of the existence of naturally occurring narrow CNVs as well as the sensitivity of the Affymetrix SNP array technology in detecting them. The MATLAB implementation of DRECS is available at http://ww2.cs.mu.oz.au/ approximately gwong/DRECS/index.html.

Interactions of multi-scale heterogeneity in the lithosphere: Australia

NASA Astrophysics Data System (ADS)

Kennett, B. L. N.; Yoshizawa, K.; Furumura, T.

2017-10-01

Understanding the complex heterogeneity of the continental lithosphere involves a wide variety of spatial scales and the synthesis of multiple classes of information. Seismic surface waves and multiply reflected body waves provide the main constraints on broad-scale structure, and bounds on the extent of the lithosphere-asthenosphere transition (LAT) can be found from the vertical gradients of S wavespeed. Information on finer-scale structures comes through body wave studies, including detailed seismic tomography and P-wave reflectivity extracted from stacked autocorrelograms of continuous component records. With the inclusion of deterministic large-scale structure and realistic medium-scale stochastic features fine-scale variations are subdued. The resulting multi-scale heterogeneity model for the Australian region gives a good representation of the character of observed seismograms and their geographic variations and matches the observations of P-wave reflectivity. P reflections in the 0.5-3.0 Hz band in the uppermost mantle suggest variations on vertical scales of a few hundred metres with amplitudes of the order of 1%. Interference of waves reflected or converted at sequences of such modest variations in physical properties produce relatively simple behaviour for lower frequencies, which can suggest simpler structures than are actually present. Vertical changes in the character of fine-scale heterogeneity can produce apparent discontinuities. In Central Australia a 'mid-lithospheric discontinuity' can be tracked via changes in frequency content of station reflectivity, with links to the broad-scale pattern of wavespeed gradients and, in particular, the gradients of radial anisotropy. Comparisons with xenolith results from southeastern Australia indicate a strong tie between geochemical stratification and P-wave reflectivity.

Rheological and physical characteristics of crustal-scaled materials for centrifuge analogue modelling

NASA Astrophysics Data System (ADS)

Waffle, Lindsay; Godin, Laurent; Harris, Lyal B.; Kontopoulou, M.

2016-05-01

We characterize a set of analogue materials used for centrifuge analogue modelling simulating deformation at different levels in the crust simultaneously. Specifically, we improve the rheological characterization in the linear viscoelastic region of materials for the lower and middle crust, and cohesive synthetic sands without petroleum-binding agents for the upper crust. Viscoelastic materials used in centrifuge analogue modelling demonstrate complex dynamic behaviour, so viscosity alone is insufficient to determine if a material will be an effective analogue. Two series of experiments were conducted using an oscillating bi-conical plate rheometer to measure the storage and loss moduli and complex viscosities of several modelling clays and silicone putties. Tested materials exhibited viscoelastic and shear-thinning behaviour. The silicone putties and some modelling clays demonstrated viscous-dominant behaviour and reached Newtonian plateaus at strain rates < 0.5 × 10-2 s-1, while other modelling clays demonstrated elastic-dominant power-law relationships. Based on these results, the elastic-dominant modelling clay is recommended as an analogue for basement cratons. Inherently cohesive synthetic sands produce fine-detailed fault and fracture patterns, and developed thrust, strike-slip, and extensional faults in simple centrifuge test models. These synthetic sands are recommended as analogues for the brittle upper crust. These new results increase the accuracy of scaling analogue models to prototype. Additionally, with the characterization of three new materials, we propose a complete lithospheric profile of analogue materials for centrifuge modelling, allowing future studies to replicate a broader range of crustal deformation behaviours.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhu, Lin; Dai, Zhenxue; Gong, Huili

Understanding the heterogeneity arising from the complex architecture of sedimentary sequences in alluvial fans is challenging. This study develops a statistical inverse framework in a multi-zone transition probability approach for characterizing the heterogeneity in alluvial fans. An analytical solution of the transition probability matrix is used to define the statistical relationships among different hydrofacies and their mean lengths, integral scales, and volumetric proportions. A statistical inversion is conducted to identify the multi-zone transition probability models and estimate the optimal statistical parameters using the modified Gauss–Newton–Levenberg–Marquardt method. The Jacobian matrix is computed by the sensitivity equation method, which results in anmore » accurate inverse solution with quantification of parameter uncertainty. We use the Chaobai River alluvial fan in the Beijing Plain, China, as an example for elucidating the methodology of alluvial fan characterization. The alluvial fan is divided into three sediment zones. In each zone, the explicit mathematical formulations of the transition probability models are constructed with optimized different integral scales and volumetric proportions. The hydrofacies distributions in the three zones are simulated sequentially by the multi-zone transition probability-based indicator simulations. Finally, the result of this study provides the heterogeneous structure of the alluvial fan for further study of flow and transport simulations.« less

A multi-scale model for correlation in B cell VDJ usage of zebrafish

NASA Astrophysics Data System (ADS)

Pan, Keyao; Deem, Michael W.

2011-10-01

The zebrafish (Danio rerio) is one of the model animals used for the study of immunology because the dynamics in the adaptive immune system of zebrafish are similar to that in higher animals. In this work, we built a multi-scale model to simulate the dynamics of B cells in the primary and secondary immune responses of zebrafish. We use this model to explain the reported correlation between VDJ usage of B cell repertoires in individual zebrafish. We use a delay ordinary differential equation (ODE) system to model the immune responses in the 6-month lifespan of a zebrafish. This mean field theory gives the number of high-affinity B cells as a function of time during an infection. The sequences of those B cells are then taken from a distribution calculated by a 'microscopic' random energy model. This generalized NK model shows that mature B cells specific to one antigen largely possess a single VDJ recombination. The model allows first-principle calculation of the probability, p, that two zebrafish responding to the same antigen will select the same VDJ recombination. This probability p increases with the B cell population size and the B cell selection intensity. The probability p decreases with the B cell hypermutation rate. The multi-scale model predicts correlations in the immune system of the zebrafish that are highly similar to that from experiment.

A simple method to achieve full-field and real-scale reconstruction using a movable stereo rig

NASA Astrophysics Data System (ADS)

Gu, Feifei; Zhao, Hong; Song, Zhan; Tang, Suming

2018-06-01

This paper introduces a simple method to achieve full-field and real-scale reconstruction using a movable binocular vision system (MBVS). The MBVS is composed of two cameras, one is called the tracking camera, and the other is called the working camera. The tracking camera is used for tracking the positions of the MBVS and the working camera is used for the 3D reconstruction task. The MBVS has several advantages compared with a single moving camera or multi-camera networks. Firstly, the MBVS could recover the real-scale-depth-information from the captured image sequences without using auxiliary objects whose geometry or motion should be precisely known. Secondly, the removability of the system could guarantee appropriate baselines to supply more robust point correspondences. Additionally, using one camera could avoid the drawback which exists in multi-camera networks, that the variability of a cameras’ parameters and performance could significantly affect the accuracy and robustness of the feature extraction and stereo matching methods. The proposed framework consists of local reconstruction and initial pose estimation of the MBVS based on transferable features, followed by overall optimization and accurate integration of multi-view 3D reconstruction data. The whole process requires no information other than the input images. The framework has been verified with real data, and very good results have been obtained.

Ammonites and magnetostratigraphy of the Berriasian-Valanginian boundary deposits from eastern Crimea

NASA Astrophysics Data System (ADS)

Arkadiev, Vladimir V.; Grishchenko, Vladimir A.; Guzhikov, Andrei Yu.; Manikin, Aleksey G.; Savelieva, Yuliya N.; Feodorova, Anna A.; Shurekova, Olga V.

2017-08-01

Euthymi, Crassicostatum and Callisto ammonite subzones, correlable with Paramimounum, Picteti, and Alpillensis subzones and probably with the Late Berriasian Otopeta Subzone of the Boissieri Standard Zone have been recognized in calcareous clays of the Berriasian-Valanginian boundary sequence in the Feodosiya district (eastern Crimea). The ammonite Leptoceras studeri (Ooster) suggests Late Berriasian to Early Valanginian age. Geomagnetic polarity indicates M16-M14r magnetozones. Therefore, the base of the Valanginian sequence in eastern Crimea should be placed within the M14r magnetozone.

Thallium (Tl) sorption onto illite and smectite: Implications for Tl mobility in the environment

NASA Astrophysics Data System (ADS)

Martin, Loïc A.; Wissocq, Aubéry; Benedetti, M. F.; Latrille, Christelle

2018-06-01

Clay minerals play a relevant role in the transport and fate of trace elements in the environment. Though illite has been referred as an important Thallium (Tl) bearing phase in soils, mechanisms and affinity of thallium for clay minerals remain poorly known. This study investigated the sorption behavior of thallium as Tl(I) onto illite and smectite, two clay minerals occurring mainly in soils and sediments. Different sorption experiments were carried out under various pH conditions and Tl concentrations, in competition with sodium and calcium at a constant ionic strength of 0.01 mol L-1. Our results showed that illite displayed more affinity than smectite for thallium. With illite, the distribution coefficients (Kd in L kg-1) varied between 102.75 ± 0.17 and 104.0 ± 0.17 in Na solutions versus between 102.25 ± 0.17 and 103.0 ± 0.17 in Ca solutions, depending on pH. With smectite, Kd (in L kg-1) ranged between 102.50 ± 0.16 and 103.20 ± 0.16 and between 101.25 ± 0.16 and 101.95 ± 0.16 in Na and Ca solutions, respectively. Sorption behavior was described with the Multi-Site Ion Exchanger model and selectivity coefficients with respect to protons were calculated for the first time. In all cases, independently of clay mineral and background electrolyte, low capacity but highly reactive sites were dominant in thallium uptake, highlighting Tl affinity for those sites. Moreover, the exchangeable and reversible interactions between Tl+ and clays reactive sites suggested that in changing conditions, thallium could be released in solution. The role of clay minerals in thallium environmental cycle is evident and confirmed illite to be a dominant Tl bearing phase, in some environment competing with manganese oxides. Compared to others Tl bearing mineral phases, clays are ranked as follows: MnO2 > illite > smectite ∼ ferrihydrite ≥ Al2O3 ∼ goethite > SiO2. Finally, over the three monovalent cations (Tl, Rb, Cs) Tl is the one less sorbed on illite independently of the background cations.

Fiber Optic Rosette Strain Gauge Development and Application on a Large-Scale Composite Structure

NASA Technical Reports Server (NTRS)

Moore, Jason P.; Przekop, Adam; Juarez, Peter D.; Roth, Mark C.

2015-01-01

A detailed description of the construction, application, and measurement of 196 FO rosette strain gauges that measured multi-axis strain across the outside upper surface of the forward bulkhead component of a multibay composite fuselage test article is presented. A background of the FO strain gauge and the FO measurement system as utilized in this application is given and results for the higher load cases of the testing sequence are shown.

Late Holocene monsoon climate as evidenced by proxy records from a lacustrine sediment sequence in western Guangdong, South China

NASA Astrophysics Data System (ADS)

Zhong, Wei; Cao, jiayuan; Xue, Jibin; Ouyang, Jun; Tang, Xiaohong; Yin, Huanling; Liao, Congyun; Long, Kun

2014-02-01

The study of a 300-cm-thick exposed lacustrine sediment section in the Hedong village in Zhaoqing area which is located in sub-tropical west Guangdong Province in South China, demonstrates that the lacustrine sedimentary sequence possibly contains evidence for exploring variation of Asian monsoon climate. Multi-proxy records, including the humification intensity, total organic carbon, and grain size fractions, reveal a general trend towards dry and cold conditions in the late Holocene that this is because of a decrease in solar insolation on an orbital scale. Three intensified Asian summer monsoon (ASM) intervals (˜3300-3000 cal yr BP, ˜2600-1600 cal yr BP, and ˜900-600 cal yr BP), and three weakened ASM intervals (˜4000-3300 cal yr BP, ˜3000-2600 cal yr BP, and ˜1600-900 cal yr BP) are identified. Our humification record (HDcal) shows a good correlation on multi-centennial scale with the tree ring Δ14C record, a proxy of solar activity. A spectral analysis of HDcal reveals four significant cycles, i.e., ˜1250 yr, 300 yr, 110 yr, and 70 yr, and most of these cycles are related to the solar activity. Our findings indicate that solar output and oceanic-atmospheric circulation probably have influenced the late Holocene climate variability in the study region.

DSAP: deep-sequencing small RNA analysis pipeline.

PubMed

Huang, Po-Jung; Liu, Yi-Chung; Lee, Chi-Ching; Lin, Wei-Chen; Gan, Richie Ruei-Chi; Lyu, Ping-Chiang; Tang, Petrus

2010-07-01

DSAP is an automated multiple-task web service designed to provide a total solution to analyzing deep-sequencing small RNA datasets generated by next-generation sequencing technology. DSAP uses a tab-delimited file as an input format, which holds the unique sequence reads (tags) and their corresponding number of copies generated by the Solexa sequencing platform. The input data will go through four analysis steps in DSAP: (i) cleanup: removal of adaptors and poly-A/T/C/G/N nucleotides; (ii) clustering: grouping of cleaned sequence tags into unique sequence clusters; (iii) non-coding RNA (ncRNA) matching: sequence homology mapping against a transcribed sequence library from the ncRNA database Rfam (http://rfam.sanger.ac.uk/); and (iv) known miRNA matching: detection of known miRNAs in miRBase (http://www.mirbase.org/) based on sequence homology. The expression levels corresponding to matched ncRNAs and miRNAs are summarized in multi-color clickable bar charts linked to external databases. DSAP is also capable of displaying miRNA expression levels from different jobs using a log(2)-scaled color matrix. Furthermore, a cross-species comparative function is also provided to show the distribution of identified miRNAs in different species as deposited in miRBase. DSAP is available at http://dsap.cgu.edu.tw.

Palaeomagnetism of the loess/palaeosol sequence in Viatovo (NE Bulgaria) in the Danube basin

NASA Astrophysics Data System (ADS)

Jordanova, Diana; Hus, Jozef; Evlogiev, Jordan; Geeraerts, Raoul

2008-03-01

The results of a palaeomagnetic investigation of a 27 m thick loess/palaeosol sequence in Viatovo (NE Bulgaria) are presented in this paper. The sequence consists of topsoil S 0, seven loess horizons (L 1-L 7) and six interbedded palaeosols (S 1-S 6) overlying a red clay (terra rossa) complex. Magnetic viscosity experiments, IRM acquisition, AMS analysis and NRM stepwise alternating and thermal demagnetisation experiments of pilot samples were implemented for precise determination of the characteristic remanence and construction of a reliable magnetostratigraphical scheme. Analysis of IRM acquisition curves using the expectation - maximization algorithm of Heslop et al. [Heslop, D., Dekkers, M., Kruiver, P., van Oorschot, H., 2002. Analysis of isothermal remanent magnetization acquisition curves using the expectation - maximization algorithm. Geophys. J. Int., 148, 58-64] suggests that the best fitting is obtained by three coercivity components. Component 1 corresponds to SD maghemite/magnetite, while component 2 is probably related to the presence of oxidised detrital magnetites. The third component shows varying coercivities depending on the degree of pedogenic alteration of the samples and probably reflects the presence of detrital magnetite grains oxidised at different degree. The relevance of the Viatovo section as a key representative sequence for the loess cover in the Danube basin is confirmed by the presence of geomagnetic polarity changes in the lower part of the sequence. The youngest one recorded in the seventh loess unit L 7 can be identified as corresponding to the Matuyama/Brunhes palaeomagnetic polarity transition. Two normal magnetozones were found in the red clay complex, probably corresponding to the Jaramillo and Olduvai subchronozones of the Matuyama chron.

Pore Structure and Diagenetic Controls on Relative Permeability: Implications for Enhanced Oil Recovery and CO2 Storage

NASA Astrophysics Data System (ADS)

Feldman, J.; Dewers, T. A.; Heath, J. E.; Cather, M.; Mozley, P.

2016-12-01

Multiphase flow in clay-bearing sandstones of the Morrow Sandstone governs the efficiency of CO2 storage and enhanced oil recovery at the Farnsworth Unit, Texas. This formation is the target for enhanced oil recovery and injection of one million metric ton of anthropogenically-sourced CO2. The sandstone hosts eight major flow units that exhibit distinct microstructural characteristics due to diagenesis, including: "clean" macro-porosity; quartz overgrowths constricting some pores; ghost grains; intergranular porosity filled by microporous authigenic clay; and feldspar dissolution. We examine the microstructural controls on macroscale (core scale) relative permeability and capillary pressure behavior through: X-ray computed tomography, Robomet.3d, and focused ion beam-scanning electron microscopy imaging of the pore structure of the major flow units of the Morrow Sandstone; relative permeability and capillary pressure in the laboratory using CO2, brine, and oil at reservoir pressure and effective stress conditions. The combined data sets inform links between patterns of diagenesis and multiphase flow. These data support multiphase reservoir simulation and performance assessment by the Southwest Regional Partnership on Carbon Sequestration (SWP). Funding for this project is provided by the U.S. Department of Energy's National Energy Technology Laboratory through the SWP under Award No. DE-FC26-05NT42591. Sandia National Laboratories is a multi-program laboratory managed and operated by Sandia Corporation, a wholly owned subsidiary of Lockheed Martin Corporation, for the U.S. Department of Energy's National Nuclear Security Administration under contract DE-AC04-94AL85000.

Multiple network alignment via multiMAGNA+.

PubMed

Vijayan, Vipin; Milenkovic, Tijana

2017-08-21

Network alignment (NA) aims to find a node mapping that identifies topologically or functionally similar network regions between molecular networks of different species. Analogous to genomic sequence alignment, NA can be used to transfer biological knowledge from well- to poorly-studied species between aligned network regions. Pairwise NA (PNA) finds similar regions between two networks while multiple NA (MNA) can align more than two networks. We focus on MNA. Existing MNA methods aim to maximize total similarity over all aligned nodes (node conservation). Then, they evaluate alignment quality by measuring the amount of conserved edges, but only after the alignment is constructed. Directly optimizing edge conservation during alignment construction in addition to node conservation may result in superior alignments. Thus, we present a novel MNA method called multiMAGNA++ that can achieve this. Indeed, multiMAGNA++ outperforms or is on par with existing MNA methods, while often completing faster than existing methods. That is, multiMAGNA++ scales well to larger network data and can be parallelized effectively. During method evaluation, we also introduce new MNA quality measures to allow for more fair MNA method comparison compared to the existing alignment quality measures. MultiMAGNA++ code is available on the method's web page at http://nd.edu/~cone/multiMAGNA++/.

MINC 2.0: A Flexible Format for Multi-Modal Images.

PubMed

Vincent, Robert D; Neelin, Peter; Khalili-Mahani, Najmeh; Janke, Andrew L; Fonov, Vladimir S; Robbins, Steven M; Baghdadi, Leila; Lerch, Jason; Sled, John G; Adalat, Reza; MacDonald, David; Zijdenbos, Alex P; Collins, D Louis; Evans, Alan C

2016-01-01

It is often useful that an imaging data format can afford rich metadata, be flexible, scale to very large file sizes, support multi-modal data, and have strong inbuilt mechanisms for data provenance. Beginning in 1992, MINC was developed as a system for flexible, self-documenting representation of neuroscientific imaging data with arbitrary orientation and dimensionality. The MINC system incorporates three broad components: a file format specification, a programming library, and a growing set of tools. In the early 2000's the MINC developers created MINC 2.0, which added support for 64-bit file sizes, internal compression, and a number of other modern features. Because of its extensible design, it has been easy to incorporate details of provenance in the header metadata, including an explicit processing history, unique identifiers, and vendor-specific scanner settings. This makes MINC ideal for use in large scale imaging studies and databases. It also makes it easy to adapt to new scanning sequences and modalities.

Analysis of Decadal Vegetation Dynamics Using Multi-Scale Satellite Images

NASA Astrophysics Data System (ADS)

Chiang, Y.; Chen, K.

2013-12-01

This study aims at quantifying vegetation fractional cover (VFC) by incorporating multi-resolution satellite images, including Formosat-2(RSI), SPOT(HRV/HRG), Landsat (MSS/TM) and Terra/Aqua(MODIS), to investigate long-term and seasonal vegetation dynamics in Taiwan. We used 40-year NDVI records for derivation of VFC, with field campaigns routinely conducted to calibrate the critical NDVI threshold. Given different sensor capabilities in terms of their spatial and spectral properties, translation and infusion of NDVIs was used to assure NDVI coherence and to determine the fraction of vegetation cover at different spatio-temporal scales. Based on the proposed method, a bimodal sequence of intra-annual VFC which corresponds to the dual-cropping agriculture pattern was observed. Compared to seasonal VFC variation (78~90%), decadal VFC reveals moderate oscillations (81~86%), which were strongly linked with landuse changes and several major disturbances. This time-series mapping of VFC can be used to examine vegetation dynamics and its response associated with short-term and long-term anthropogenic/natural events.

The Influence of Syndepositional Macropores on the Hydraulic Integrity of Thick Alluvial Clay Aquitards

NASA Astrophysics Data System (ADS)

Timms, Wendy A.; Acworth, R. Ian; Crane, Richard A.; Arns, Christoph H.; Arns, Ji-Youn; McGeeney, Dayna E.; Rau, Gabriel C.; Cuthbert, Mark O.

2018-04-01

Clay-rich deposits are commonly assumed to be aquitards which act as natural hydraulic barriers due to their low hydraulic connectivity. Postdepositional weathering processes are known to increase the permeability of aquitards in the near surface but not impact on deeper parts of relatively thick formations. However, syndepositional processes affecting the hydraulic properties of aquitards have previously received little attention in the literature. Here, we analyze a 31 m deep sediment core recovered from an inland clay-rich sedimentary sequence using a combination of techniques including particle size distribution and microscopy, centrifuge dye tracer testing and micro X-ray CT imaging. Subaerial deposition of soils within these fine grained alluvial deposits has led to the preservation of considerable macropores (root channels or animal burrows). Connected pores and macropores thus account for vertical hydraulic conductivity (K) of 4.2×10-9 m/s (geometric mean of 13 samples) throughout the thick aquitard, compared to a matrix K that is likely <10-10 m/s, the minimum K value that was measured. Our testing demonstrates that such syndepositional features may compromise the hydraulic integrity of what otherwise appears to have the characteristics of a much lower permeability aquitard. Heterogeneity within a clay-rich matrix could also enhance vertical connectivity, as indicated by digital analysis of pore morphology in CT images. We highlight that the paleo-environment under which the sediment was deposited must be considered when aquitards are investigated as potential natural hydraulic barriers and illustrate the value of combining multiple investigation techniques for characterizing clay-rich deposits.

Quantitative mineralogy of surface sediments of the Iceland shelf, and application to down-core studies of holocene ice-rafted sediments

USGS Publications Warehouse

Andrews, John T.; Eberl, D.D.

2007-01-01

Quantitative X-ray diffraction analyses on the < 2 mm sediment fraction from the Iceland shelves are reported for subglacial diamictons, seafloor surface sediments, and the last 2000 cal yr BP from two cores. The overall goal of the paper is to characterize the spatial variability of the mineralogy of the present-day surface sediments (18 non-clay minerals and 7 clay minerals), compare that with largely in situ erosional products typified by the composition of subglacial diamictons, and finally examine the late Holocene temporal variability in mineral composition using multi-mineral compositions. The subglacial diamictons are dominated in the non-clay-mineral fraction by the plagioclase feldspars and pyroxene with 36.7 ?? 6.1 and 17.9 ?? 3.5 wt % respectively, with smectites being the dominant clay minerals. The surface seafloor sediments have similar compositions although there are substantial amounts of calcite, plus there is a distinct band of sites from NW to N-central Iceland that contain 1-6 wt% of quartz. This latter distribution mimics the modern and historic pattern of drift ice in Iceland waters. Principal component analysis of the transformed wt% (log-ratio) non-clay minerals is used to compare the subglacial, surface, and down-core mineral compositions. Fifty-eight percent of the variance is explained by the first two axes, with dolomite, microcline, and quartz being important "foreign" species. These analyses indicate that today the NW-N-central Iceland shelf is affected by the import of exotic minerals, which are transported and released from drift ice. The down-core mineralogy indicates that this is a process that has varied over the last 2000 cal yr BP. Copyright ?? 2007, SEPM (Society for Sedimentary Geology).

Turbulent Coagulation of Particles Smaller Than the Length Scales of Turbulence and Equilibrium Sorption of Phenanthrene to Clay: Implications for Pollutant Transport in the Estuarine Water Column

DTIC Science & Technology

1997-05-01

estuaries was modeled using phenanthrene, bacterial extracellular polymer and kaolinite clay as surrogates for a hydrophobic organic pollutant...coefficients obtained for phenanthrene sorption to kaolinite and bentonite in the presence of varying amounts of DOM represented by alginic acid and tannic...acid. 333 Table B.3: Literature values for sorption between phenanthrene, humic acid and kaolinite for [DOM]a = 10 mg/L 334 Table E.1: Sample output data

Generalized thickness of the confining bed overlying the Floridan Aquifer, Southwest Florida Water Management District

USGS Publications Warehouse

Buono, Anthony; Spechler, R.M.; Barr, G.L.; Wolansky, R.M.

1979-01-01

This map presents the thickness of the confining bed overlying the Floridan aquifer in the Southwest Florida Water Management District and adjacent areas. The bed separates the surficial aquifer from the underlying Floridan aquifer. Lithologic logs and information from quarries were used in conjunction with an unpublished map to compile this map at 1:250,000 scale. Units included in the confining bed are: clay, sandy clay and marl, undifferentiated with respect to age, the Hawthorn Formation, and the unconsolidated sections of the Tampa Limestone. (Kosco-USGS)

Early pleistocene sediments at Great Blakenham, Suffolk, England

NASA Astrophysics Data System (ADS)

Gibbard, P. L.; Allen, P.; Field, M. H.; Hallam, D. F.

Detailed investigation of a fine sediment sequence, the College Farm Silty Clay Member, that overlies the Creeting Sands (Early Pleistocene) in Suffolk, is presented. The sedimentary sequence is thought to represent a freshwater pool accumulation in a small coastal embayment. Palaeobotanical investigation of the sediment indicates that it accumulated during the late temperate substage of a temperate (interglacial) event. The occurrence of Tsuga pollen, associated with abundant remains of the water fern Azolla tegeliensis indicate that the deposits are of Early Pleistocene age and are correlated with a later part of the Antian-Bramertonian Stage. Correlation with Tiglian TO substage in The Netherlands' sequence is most likely. The sediments' normal palaeomagnetic polarity reinforces the biostratigraphical correlation.

SeqRate: sequence-based protein folding type classification and rates prediction

PubMed Central

2010-01-01

Background Protein folding rate is an important property of a protein. Predicting protein folding rate is useful for understanding protein folding process and guiding protein design. Most previous methods of predicting protein folding rate require the tertiary structure of a protein as an input. And most methods do not distinguish the different kinetic nature (two-state folding or multi-state folding) of the proteins. Here we developed a method, SeqRate, to predict both protein folding kinetic type (two-state versus multi-state) and real-value folding rate using sequence length, amino acid composition, contact order, contact number, and secondary structure information predicted from only protein sequence with support vector machines. Results We systematically studied the contributions of individual features to folding rate prediction. On a standard benchmark dataset, the accuracy of folding kinetic type classification is 80%. The Pearson correlation coefficient and the mean absolute difference between predicted and experimental folding rates (sec-1) in the base-10 logarithmic scale are 0.81 and 0.79 for two-state protein folders, and 0.80 and 0.68 for three-state protein folders. SeqRate is the first sequence-based method for protein folding type classification and its accuracy of fold rate prediction is improved over previous sequence-based methods. Its performance can be further enhanced with additional information, such as structure-based geometric contacts, as inputs. Conclusions Both the web server and software of predicting folding rate are publicly available at http://casp.rnet.missouri.edu/fold_rate/index.html. PMID:20438647

43. CUTTING APART PIECES OF A MOSAIC. WHEN SEPARATED, THE ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

43. CUTTING APART PIECES OF A MOSAIC. WHEN SEPARATED, THE PIECES CAN BE INDIVIDUALLY GLAZED, SMOKED, OR FINISH FIRED TO PRODUCE A MULTI-COLORED IMAGE WHEN REASSEMBLED. NOTE THE SUBSTITUTION OF BUFF FOR RED CLAY IN SEVERAL PIECES OF MOSAIC ON THE LEFT. - Moravian Pottery & Tile Works, Southwest side of State Route 313 (Swamp Road), Northwest of East Court Street, Doylestown, Bucks County, PA

The evolution of lifespan and age-dependent cancer risk.

PubMed

Rozhok, Andrii I; DeGregori, James

2016-10-01

The Armitage-Doll multi-stage model of carcinogenesis tremendously refocused cancer science by postulating that carcinogenesis is driven by a sequence of genetic changes in cells. Age-dependent cancer incidence thus has been explained in terms of the time necessary for oncogenic mutations to occur. While the multi-step nature of cancer evolution is well-supported by evidence, the mutation-centric theory is unable to explain a number of phenomena, such as the disproportion between cancer frequency and animal body size or the scaling of cancer incidence to animal lifespan. In this paper, we present a theoretical review of the current paradigm and discuss some fundamental evolutionary theory postulates that explain why cancer incidence is a function of lifespan and physiological, not chronological, aging.

NMR imaging and cryoporometry of swelling clays

NASA Astrophysics Data System (ADS)

Dvinskikh, Sergey V.; Szutkowski, Kosma; Petrov, Oleg V.; Furó, István.

2010-05-01

Compacted bentonite clay is currently attracting attention as a promising "self-sealing" buffer material to build in-ground barriers for the encapsulation of radioactive waste. It is expected to fill up the space between waste canister and surrounding ground by swelling and thus delay flow and migration from the host rock to the canister. In environmental sciences, evaluation and understanding of the swelling properties of pre-compacted clay are of uttermost importance for designing such buffers. Major goal of present study was to provide, in a non-invasive manner, a quantitative measure of bentonite distribution in extended samples during different physical processes in an aqueous environment such as swelling, dissolution, and sedimentation on the time scale from minutes to years. The propagation of the swelling front during clay expansion depending on the geometry of the confining space was also studied. Magnetic resonance imaging and nuclear magnetic resonance spectroscopy were adapted and used as main experimental techniques. With this approach, spatially resolved movement of the clay/water interface as well as clay particle distributions in gel phase can be monitored [1]. Bulk samples with swelling in a vertical tube and in a horizontal channel were investigated and clay content distribution profiles in the concentration range over five orders of magnitude and with sub-millimetre spatial resolution were obtained. Expansion rates for bulk swelling and swelling in narrow slits were compared. For sodium-exchanged montmorillonite in contact with de-ionised water, we observed a remarkable acceleration of expansion as compared to that obtained in the bulk. To characterize the porosity of the clay a cryoporometric study [2] has been performed. Our results have important implications to waste repository designs and for the assessment of its long-term performance. Further research exploring clay-water interaction over a wide variety of clay composition and water ionic strength as well as investigating the effect of the confining geometry and material surface properties seem to be worth to pursue. Acknowledgements: This work has been supported by the Swedish Nuclear Fuel and Waste Management Co (SKB) and the Swedish Research Council VR. References: [1] Dvinskikh S. V., Szutkowski K., Furó I. MRI profiles over a very wide concentration ranges: application to swelling of a bentonite clay. J. Magn. Reson. 198, 146 (2009). [2] Petrov O. V., Furó I. NMR cryoporometry: Principles, applications and potential. Prog. Nucl. Magn. Reson. Spec. 54, 97 (2009).

Complete genome sequence of Pelosinus sp. strain UFO1 assembled using single-molecule real-time DNA sequencing technology

DOE PAGES

Brown, Steven D.; Utturkar, Sagar M.; Magnuson, Timothy S.; ...

2014-09-04

Pelosinus fermentans strain R7 was isolated from Russian kaolin clays as the type strain and it can reduce Fe(III) during fermentative growth (1). Draft genome sequences for P. fermentans R7 and four strains from Hanford, Washington, USA, have been published (2–4). The P. fermentans 16S rRNA sequence dominated the lactate-based enrichment cultures from three geochemically contrasting soils from the Melton Branch Watershed, Oak Ridge, Tennessee, USA (5) and also at another stimulated, uraniumcontaminated field site near Oak Ridge (6). For the current work, strain UFO1 was isolated from pristine sediments at a background field site in Oak Ridge and characterizedmore » as facilitating U(VI) reduction and precipitation with phosphate (7).« less

Identifying Conventionally Sub-Seismic Faults in Polygonal Fault Systems

NASA Astrophysics Data System (ADS)

Fry, C.; Dix, J.

2017-12-01

Polygonal Fault Systems (PFS) are prevalent in hydrocarbon basins globally and represent potential fluid pathways. However the characterization of these pathways is subject to the limitations of conventional 3D seismic imaging; only capable of resolving features on a decametre scale horizontally and metres scale vertically. While outcrop and core examples can identify smaller features, they are limited by the extent of the exposures. The disparity between these scales can allow for smaller faults to be lost in a resolution gap which could mean potential pathways are left unseen. Here the focus is upon PFS from within the London Clay, a common bedrock that is tunnelled into and bears construction foundations for much of London. It is a continuation of the Ieper Clay where PFS were first identified and is found to approach the seafloor within the Outer Thames Estuary. This allows for the direct analysis of PFS surface expressions, via the use of high resolution 1m bathymetric imaging in combination with high resolution seismic imaging. Through use of these datasets surface expressions of over 1500 faults within the London Clay have been identified, with the smallest fault measuring 12m and the largest at 612m in length. The displacements over these faults established from both bathymetric and seismic imaging ranges from 30cm to a couple of metres, scales that would typically be sub-seismic for conventional basin seismic imaging. The orientations and dimensions of the faults within this network have been directly compared to 3D seismic data of the Ieper Clay from the offshore Dutch sector where it exists approximately 1km below the seafloor. These have typical PFS attributes with lengths of hundreds of metres to kilometres and throws of tens of metres, a magnitude larger than those identified in the Outer Thames Estuary. The similar orientations and polygonal patterns within both locations indicates that the smaller faults exist within typical PFS structure but are sub-seismic in conventional imaging techniques. These unseen faults could create additional unseen pathways that impact construction in London via water ingress and influence fluid migration within hydrocarbon basins.

Multi-proxy reconstructions of hydrologic change during the Eocene-Oligocene transition in the North American Interior

NASA Astrophysics Data System (ADS)

Eley, Y.; Hren, M. T.

2016-12-01

The dramatic shift from a 'greenhouse' to an 'icehouse' world that occurred during the Eocene-Oligocene transition (EOT, 34-33.5 Ma) is associated with changes in atmospheric and oceanic circulation patterns, extinction events in both marine and terrestrial ecosystems, and the establishment of a continental-scale ice sheet on Antarctica. Terrestrial records of the EOT, however, show limited consensus regarding the intensity and impact of this transition, complicating our understanding of how terrestrial hydrology responds to climatic change of this magnitude. Stable isotopes of fossil bones and teeth from the White River Group (WRG) in Nebraska have been interpreted to show an 8 °C decrease in mean annual temperatures across the EOT, with an increase in seasonality, however these studies find no evidence for accompanying changes in aridity. Conversely, other studies have inferred increased aridity in the early Oligocene based on changes in the δ18O and δ13C values of mammalian tooth enamel sampled from the same location. Some of this ambiguity is likely to stem from the difficulty in separating the influence of factors such as temperature, water availability and atmospheric circulation patterns on the δ18O composition of ungulate tooth enamel. We present paired leaf wax biomarker and clay hydrogen isotope data from the WRG to produce a new multi-proxy record of hydrological change and accompanying ecosystem shifts through the EOT in the North American interior. Hydrogen isotopes of clay minerals show a negative shift of <15‰ from the late Eocene through early Oligocene, while in contrast leaf wax n-alkanes record a negative shift in excess of 50‰, in tandem with a positive change in average chain length. We infer an increase in aridity from these data, with an associated potential shift in vegetation cover towards more savannah-style plant species as the climate became drier during the transition into the Oligocene. These data provide new constraints on the impact of the EOT in North America, and highlight the potential role of increasing aridity, in addition to declining temperatures, in shaping the hydrology of the region during this interval.

Evidence of biological activity in Hawaiian subsurface basalts

NASA Astrophysics Data System (ADS)

Fisk, M. R.; Storrie-Lombardi, M. C.; Douglas, S.; Popa, R.; McDonald, G.; di Meo-Savoie, C.

2003-12-01

The Hawaii Scientific Drilling Program (HSDP) cored and recovered igneous rock from the surface to a depth of 3109 m near Hilo, Hawaii. Much of the deeper parts of the hole is composed of hyaloclastite (fractured basalt glass that has been cemented in situ with secondary minerals). Some hyaloclastite units have been altered in a manner attributed to microorganisms in volcanic rocks. Samples from one such unit (1336 m to 1404 m below sea level) were examined to test the hypothesis that the alteration was associated with microorganisms. Deep ultraviolet native fluorescence and resonance Raman spectroscopy indicate that nucleic acids and aromatic amino acids are present in clay inside spherical cavities (vesicles) within basalt glass. Chemical mapping shows that phosphorus and carbon were enriched at the boundary between the clay and volcanic glass of the vesicles. Environmental scanning electron microscopy (ESEM) reveals two to three micrometer coccoid structures in these same boundaries. ESEM-linked energy dispersive spectroscopy demonstrated carbon, phosphorous, chloride, and magnesium in these bodies significantly differing from unoccupied neighboring regions of basalt. These observations taken together indicate the presence of microorganisms at the boundary between primary volcanic glass and secondary clays. Amino acids and nucleic acids were extracted from bulk samples of the hyaloclastite unit. Amino acid abundance was low, and if the amino acids are derived from microorganisms in the rock, then there are less than 100,000 cells per gram of rock. Most nucleic acid sequences extracted from the unit were closely related to sequences of Crenarchaeota collected from the subsurface of the ocean floor.

Role of Interfaces in Elasticity and Failure of Clay-Organic Nanocomposites: Toughening upon Interface Weakening?

PubMed

Hantal, György; Brochard, Laurent; Pellenq, Roland J-M; Ulm, Franz-Joseph; Coasne, Benoit

2017-10-24

Synthetic organic-inorganic composites constitute a new class of engineering materials finding applications in an increasing range of fields. The interface between the constituting phases plays a pivotal role in the enhancement of mechanical properties. In exfoliated clay-organic nanocomposites, individual, high aspect ratio clay sheets are dispersed in the organic matrix providing large interfaces and hence efficient stress transfer. In this study, we aim at elucidating molecular-scale reinforcing mechanisms in a series of model clay-organic composite systems by means of reactive molecular simulations. In our models, two possible locations of failure initiation are present: one is the interlayer space of the clay platelet, and the other one is the clay-organic interface. We systematically modify the cohesiveness of the interface and assess how the failure mechanism changes when the different model composites are subjected to a tensile test. Besides a change in the failure mechanism, an increase in the released energy at the interface (meaning an increased overall toughness) are observed upon weakening the interface by bond removal. We propose a theoretical analysis of these results by considering a cohesive law that captures the effect of the interface on the composite mechanics. We suggest an atomistic interpretation of this cohesive law, in particular, how it relates to the degree of bonding at the interface. In a broader perspective, this work sheds light on the importance of the orthogonal behavior of interfaces to nanocomposites.

Extremes and bursts in complex multi-scale plasmas

NASA Astrophysics Data System (ADS)

Watkins, N. W.; Chapman, S. C.; Hnat, B.

2012-04-01

Quantifying the spectrum of sizes and durations of large and/or long-lived fluctuations in complex, multi-scale, space plasmas is a topic of both theoretical and practical importance. The predictions of inherently multi-scale physical theories such as MHD turbulence have given one direct stimulus for its investigation. There are also space weather implications to an improved ability to assess the likelihood of an extreme fluctuation of a given size. Our intuition as scientists tends to be formed on the familiar Gaussian "normal" distribution, which has a very low likelihood of extreme fluctuations. Perhaps surprisingly, there is both theoretical and observational evidence that favours non-Gaussian, heavier-tailed, probability distributions for some space physics datasets. Additionally there is evidence for the existence of long-ranged memory between the values of fluctuations. In this talk I will show how such properties can be captured in a preliminary way by a self-similar, fractal model. I will show how such a fractal model can be used to make predictions for experimental accessible quantities like the size and duration of a buurst (a sequence of values that exceed a given threshold), or the survival probability of a burst [c.f. preliminary results in Watkins et al, PRE, 2009]. In real-world time series scaling behaviour need not be "mild" enough to be captured by a single self-similarity exponent H, but might instead require a "wild" multifractal spectrum of scaling exponents [e.g. Rypdal and Rypdal, JGR, 2011; Moloney and Davidsen, JGR, 2011] to give a complete description. I will discuss preliminary work on extending the burst approach into the multifractal domain [see also Watkins et al, chapter in press for AGU Chapman Conference on Complexity and Extreme Events in the Geosciences, Hyderabad].

Construction, geologic, and hydrologic data for observation wells in the Reelfoot Lake area, Tennessee and Kentucky

USGS Publications Warehouse

Bradley, M.W.

1987-01-01

Twenty-three observation wells were installed at 12 sites in the Reelfoot Lake area of Kentucky and Tennessee during July 1986. The wells were installed to supplement an existing water level network and to provide additional data on the hydraulic characteristics and vertical hydraulic gradients in the alluvial aquifer near Reelfoot Lake. Well yields ranged from less than 20 gallons per minute to about 140 gallons per minute. The specific capacities of the wells ranged from less than 1 to 17.1 gallons per minute per foot of drawdown. Dissolved-solids concentrations ranged from 153 to 475 milligrams per liter at six wells. Three lithological sequences were encountered during drilling. Deep clay and silty clay occurred near the southwest corner of Reelfoot Lake. Predominantly medium- to coarse-grained sand occurred below about 15 feet of silt and clay near the west and northwest sides of the Lake. Along the western limit of the study area, near Lake No. 9 and the Mississippi River, at least about 50 feet of silt and silty sand occurred below land surface. (USGS)

A viscous-to-brittle transition in eruptions through clay suspensions

NASA Astrophysics Data System (ADS)

Schmid, Diana; Scheu, Bettina; Wadsworth, Fabian B.; Kennedy, Ben M.; Jolly, Arthur; Dingwell, Donald B.

2017-05-01

Volcanic lakes are often associated with active geothermal circulation, mineral alteration, and precipitation, each of which can complicate the analysis of shallow magma physics, geophysical signals, and chemical signals. The rheology of the lake and associated hydrothermal system affects the eruptive activity as bubbles ascend and burst through the lake producing distinct ejection behavior. We investigate such phenomena by conducting scaled experiments in which heated water-clay suspensions are decompressed rapidly from relevant pressures. After a jet phase of expanding vapor, the suspensions break up into ejecta that are either angular or droplet geometry. We parameterize these regimes and find a universal clay volume fraction of 0.28 below which the ejecta are form droplets and above which the ejecta are angular. We propose a regime diagram for optical observations of active lakes, which allows rheological characterization and informs volcanic monitoring.

Theoretical study of the atrazine pesticide interaction with pyrophyllite and Ca(2+) -montmorillonite clay surfaces.

PubMed

Belzunces, Bastien; Hoyau, Sophie; Benoit, Magali; Tarrat, Nathalie; Bessac, Fabienne

2017-01-30

Atrazine, a pesticide belonging to the s-triazine family, is one of the most employed pesticides. Due to its negative impact on the environment, it has been forbidden within the European Union since 2004 but remains abundant in soils. For these reasons, its behavior in soils and water at the atomic scale is of great interest. In this article, we have investigated, using DFT, the adsorption of atrazine onto two different clay surfaces: a pyrophyllite clay and an Mg-substituted clay named montmorillonite, with Ca 2+ compensating cations on its surface. The calculations show that the atrazine molecule is physisorbed on the pyrophyllite surface, evidencing the necessity to use dispersion-corrected computational methods. The adsorption energies of atrazine on montmorillonite are two to three times larger than on pyrophyllite, depending on the adsorption pattern. The computed adsorption energy is of about -30 kcal mol -1 for the two most stable montmorillonite-atrazine studied isomers. For these complexes, the large adsorption energy is related to the strong interaction between the chlorine atom of the atrazine molecule and one of the Ca 2+ compensating cations of the clay surface. The structural modifications induced by the adsorption are localized: for the surface, close to substitutions and particularly below the Ca 2+ cations; in the molecule, around the chlorine atom when Ca 2+ interacts strongly with this basic site in a monodentate mode. This study shows the important role of the alkaline earth cations on the adsorption of atrazine on clays, suggesting that the atrazine pesticide retention will be significant in Ca 2+ -montmorillonite clays. © 2016 Wiley Periodicals, Inc. © 2016 Wiley Periodicals, Inc.

Project Report: Automatic Sequence Processor Software Analysis

NASA Technical Reports Server (NTRS)

Benjamin, Brandon

2011-01-01

The Mission Planning and Sequencing (MPS) element of Multi-Mission Ground System and Services (MGSS) provides space missions with multi-purpose software to plan spacecraft activities, sequence spacecraft commands, and then integrate these products and execute them on spacecraft. Jet Propulsion Laboratory (JPL) is currently is flying many missions. The processes for building, integrating, and testing the multi-mission uplink software need to be improved to meet the needs of the missions and the operations teams that command the spacecraft. The Multi-Mission Sequencing Team is responsible for collecting and processing the observations, experiments and engineering activities that are to be performed on a selected spacecraft. The collection of these activities is called a sequence and ultimately a sequence becomes a sequence of spacecraft commands. The operations teams check the sequence to make sure that no constraints are violated. The workflow process involves sending a program start command, which activates the Automatic Sequence Processor (ASP). The ASP is currently a file-based system that is comprised of scripts written in perl, c-shell and awk. Once this start process is complete, the system checks for errors and aborts if there are any; otherwise the system converts the commands to binary, and then sends the resultant information to be radiated to the spacecraft.

Safety-relevant hydrogeological properties of the claystone barrier of a Swiss radioactive waste repository: An evaluation using multiple lines of evidence

NASA Astrophysics Data System (ADS)

Gautschi, Andreas

2017-09-01

In Switzerland, the Opalinus Clay - a Jurassic (Aalenian) claystone formation - has been proposed as the first-priority host rock for a deep geological repository for both low- and intermediate-level and high-level radioactive wastes. An extensive site and host rock investigation programme has been carried out during the past 30 years in Northern Switzerland, comprising extensive 2D and 3D seismic surveys, a series of deep boreholes within and around potential geological siting regions, experiments in the international Mont Terri Rock Laboratory, compilations of data from Opalinus Clay in railway and motorway tunnels and comparisons with similar rocks. The hydrogeological properties of the Opalinus Clay that are relevant from the viewpoint of long-term safety are described and illustrated. The main conclusions are supported by multiple lines of evidence, demonstrating consistency of conclusions based on hydraulic properties, porewater chemistry, distribution of natural tracers across the Opalinus Clay as well as small- and large-scale diffusion models and the derived conceptual understanding of solute transport.

Radiometric ages of the Fire Clay tonstein [Pennsylvanian (Upper Carboniferous), Westphalian, Duckmantian]: A comparison of U-Pb zircon single-crystal ages and 40Ar/39Ar sanidine single-crystal plateau ages

USGS Publications Warehouse

Lyons, P.C.; Krogh, T.E.; Kwok, Y.Y.; Davis, D.W.; Outerbridge, W.F.; Evans, H.T.

2006-01-01

The Fire Clay tonstein [Pennsylvanian (Upper Carboniferous), Westphalian Series, Duckmantian Stage]-a kaolinized, volcanic-ash deposit occurring in Kentucky, West Virginia, Tennessee, and Virginia-is the most widespread bed in the Middle Pennsylvanian of the central Appalachian basin, USA. A concordant single-crystal U-Pb zircon datum for this tonstein gives a 206Pb/238U age of 314.6 ?? 0.9 Ma (2??). This age is in approximate agreement with a mean sanidine plateau age of 311.5 ?? 1.3 Ma (1??, n = 11) for the Fire Clay tonstein. The difference between the two ages may be due to bias between the 40K and 238U decay constants and other factors. The age of the Fire Clay tonstein has important implications for Duckmantian Stage (Westphalian Series) sedimentation rates, correlations with the Westphalian Series of Europe, Middle Pennsylvanian volcanic events, and the late Paleozoic time scale. ?? 2006 Elsevier B.V. All rights reserved.

Atomistic Structure of Mineral Nano-aggregates from Simulated Compaction and Dewatering.

PubMed

Ho, Tuan Anh; Greathouse, Jeffery A; Wang, Yifeng; Criscenti, Louise J

2017-11-10

The porosity of clay aggregates is an important property governing chemical reactions and fluid flow in low-permeability geologic formations and clay-based engineered barrier systems. Pore spaces in clays include interlayer and interparticle pores. Under compaction and dewatering, the size and geometry of such pore spaces may vary significantly (sub-nanometer to microns) depending on ambient physical and chemical conditions. Here we report a molecular dynamics simulation method to construct a complex and realistic clay-like nanoparticle aggregate with interparticle pores and grain boundaries. The model structure is then used to investigate the effect of dewatering and water content on micro-porosity of the aggregates. The results suggest that slow dewatering would create more compact aggregates compared to fast dewatering. Furthermore, the amount of water present in the aggregates strongly affects the particle-particle interactions and hence the aggregate structure. Detailed analyses of particle-particle and water-particle interactions provide a molecular-scale view of porosity and texture development of the aggregates. The simulation method developed here may also aid in modeling the synthesis of nanostructured materials through self-assembly of nanoparticles.

Atomistic Structure of Mineral Nano-aggregates from Simulated Compaction and Dewatering

DOE PAGES

Ho, Tuan Anh; Greathouse, Jeffery A.; Wang, Yifeng; ...

2017-11-10

The porosity of clay aggregates is an important property governing chemical reactions and fluid flow in low-permeability geologic formations and clay-based engineered barrier systems. Pore spaces in clays include interlayer and interparticle pores. Under compaction and dewatering, the size and geometry of such pore spaces may vary significantly (sub-nanometer to microns) depending on ambient physical and chemical conditions. Here we report a molecular dynamics simulation method to construct a complex and realistic clay-like nanoparticle aggregate with interparticle pores and grain boundaries. The model structure is then used to investigate the effect of dewatering and water content on micro-porosity of themore » aggregates. The results suggest that slow dewatering would create more compact aggregates compared to fast dewatering. Furthermore, the amount of water present in the aggregates strongly affects the particle-particle interactions and hence the aggregate structure. Detailed analyses of particle-particle and water-particle interactions provide a molecular-scale view of porosity and texture development of the aggregates. The simulation method developed here may also aid in modeling the synthesis of nanostructured materials through self-assembly of nanoparticles.« less

RNA-TVcurve: a Web server for RNA secondary structure comparison based on a multi-scale similarity of its triple vector curve representation.

PubMed

Li, Ying; Shi, Xiaohu; Liang, Yanchun; Xie, Juan; Zhang, Yu; Ma, Qin

2017-01-21

RNAs have been found to carry diverse functionalities in nature. Inferring the similarity between two given RNAs is a fundamental step to understand and interpret their functional relationship. The majority of functional RNAs show conserved secondary structures, rather than sequence conservation. Those algorithms relying on sequence-based features usually have limitations in their prediction performance. Hence, integrating RNA structure features is very critical for RNA analysis. Existing algorithms mainly fall into two categories: alignment-based and alignment-free. The alignment-free algorithms of RNA comparison usually have lower time complexity than alignment-based algorithms. An alignment-free RNA comparison algorithm was proposed, in which novel numerical representations RNA-TVcurve (triple vector curve representation) of RNA sequence and corresponding secondary structure features are provided. Then a multi-scale similarity score of two given RNAs was designed based on wavelet decomposition of their numerical representation. In support of RNA mutation and phylogenetic analysis, a web server (RNA-TVcurve) was designed based on this alignment-free RNA comparison algorithm. It provides three functional modules: 1) visualization of numerical representation of RNA secondary structure; 2) detection of single-point mutation based on secondary structure; and 3) comparison of pairwise and multiple RNA secondary structures. The inputs of the web server require RNA primary sequences, while corresponding secondary structures are optional. For the primary sequences alone, the web server can compute the secondary structures using free energy minimization algorithm in terms of RNAfold tool from Vienna RNA package. RNA-TVcurve is the first integrated web server, based on an alignment-free method, to deliver a suite of RNA analysis functions, including visualization, mutation analysis and multiple RNAs structure comparison. The comparison results with two popular RNA comparison tools, RNApdist and RNAdistance, showcased that RNA-TVcurve can efficiently capture subtle relationships among RNAs for mutation detection and non-coding RNA classification. All the relevant results were shown in an intuitive graphical manner, and can be freely downloaded from this server. RNA-TVcurve, along with test examples and detailed documents, are available at: http://ml.jlu.edu.cn/tvcurve/ .

Fate of the antibiotic sulfadiazine in natural soils: Experimental and numerical investigations.

PubMed

Engelhardt, Irina; Sittig, Stephan; Šimůnek, Jirka; Groeneweg, Joost; Pütz, Thomas; Vereecken, Harry

2015-01-01

Based on small-scale laboratory and field-scale lysimeter experiments, the sorption and biodegradation of sulfonamide sulfadiazine (SDZ) were investigated in unsaturated sandy and silty-clay soils. Sorption and biodegradation were low in the laboratory, while the highest leaching rates were observed when SDZ was mixed with manure. The leaching rate decreased when SDZ was mixed with pure water, and was smallest with the highest SDZ concentrations. In the laboratory, three transformation products (TPs) developed after an initial lag phase. However, the amount of TPs was different for different mixing-scenarios. The TP 2-aminopyrimidine was not observed in the laboratory, but was the most prevalent TP at the field scale. Sorption was within the same range at the laboratory and field scales. However, distinctive differences occurred with respect to biodegradation, which was higher in the field lysimeters than at the laboratory scale. While the silty-clay soil favored sorption of SDZ, the sandy, and thus highly permeable, soil was characterized by short half-lives and thus a quick biodegradation of SDZ. For 2-aminopyrimidine, half-lives of only a few days were observed. Increased field-scale biodegradation in the sandy soil resulted from a higher water and air permeability that enhanced oxygen transport and limited oxygen depletion. Furthermore, low pH was more important than the organic matter and clay content for increasing the biodegradation of SDZ. A numerical analysis of breakthrough curves of bromide, SDZ, and its TPs showed that preferential flow pathways strongly affected the solute transport within shallow parts of the soil profile at the field scale. However, this effect was reduced in deeper parts of the soil profile. Due to high field-scale biodegradation in several layers of both soils, neither SDZ nor 2-aminopyrimidine was detected in the discharge of the lysimeter at a depth of 1m. Synthetic 50 year long simulations, which considered the application of manure with SDZ for general agricultural practices in Germany and humid climate conditions, showed that the concentration of SDZ decreased below 0.1 μg/L in both soils below the depth of 50 cm. Copyright © 2015 Elsevier B.V. All rights reserved.

Fate of the antibiotic sulfadiazine in natural soils: Experimental and numerical investigations

NASA Astrophysics Data System (ADS)

Engelhardt, Irina; Sittig, Stephan; Šimůnek, Jirka; Groeneweg, Joost; Pütz, Thomas; Vereecken, Harry

2015-06-01

Based on small-scale laboratory and field-scale lysimeter experiments, the sorption and biodegradation of sulfonamide sulfadiazine (SDZ) were investigated in unsaturated sandy and silty-clay soils. Sorption and biodegradation were low in the laboratory, while the highest leaching rates were observed when SDZ was mixed with manure. The leaching rate decreased when SDZ was mixed with pure water, and was smallest with the highest SDZ concentrations. In the laboratory, three transformation products (TPs) developed after an initial lag phase. However, the amount of TPs was different for different mixing-scenarios. The TP 2-aminopyrimidine was not observed in the laboratory, but was the most prevalent TP at the field scale. Sorption was within the same range at the laboratory and field scales. However, distinctive differences occurred with respect to biodegradation, which was higher in the field lysimeters than at the laboratory scale. While the silty-clay soil favored sorption of SDZ, the sandy, and thus highly permeable, soil was characterized by short half-lives and thus a quick biodegradation of SDZ. For 2-aminopyrimidine, half-lives of only a few days were observed. Increased field-scale biodegradation in the sandy soil resulted from a higher water and air permeability that enhanced oxygen transport and limited oxygen depletion. Furthermore, low pH was more important than the organic matter and clay content for increasing the biodegradation of SDZ. A numerical analysis of breakthrough curves of bromide, SDZ, and its TPs showed that preferential flow pathways strongly affected the solute transport within shallow parts of the soil profile at the field scale. However, this effect was reduced in deeper parts of the soil profile. Due to high field-scale biodegradation in several layers of both soils, neither SDZ nor 2-aminopyrimidine was detected in the discharge of the lysimeter at a depth of 1 m. Synthetic 50 year long simulations, which considered the application of manure with SDZ for general agricultural practices in Germany and humid climate conditions, showed that the concentration of SDZ decreased below 0.1 μg/L in both soils below the depth of 50 cm.

How long do natural waters “remember” release incidents of Marcellus Shale waters: a first order approximation using reactive transport modeling

DOE PAGES

Cai, Zhang; Li, Li

2016-12-13

Natural gas production from the Marcellus Shale formation has significantly changed energy landscape in recent years. Accidental release, including spills, leakage, and seepage of the Marcellus Shale flow back and produced waters can impose risks on natural water resources. With many competing processes during the reactive transport of chemical species, it is not clear what processes are dominant and govern the impacts of accidental release of Marcellus Shale waters (MSW) into natural waters. Here we carry out numerical experiments to explore this largely unexploited aspect using cations from MSW as tracers with a focus on abiotic interactions between cations releasedmore » from MSW and natural water systems. Reactive transport models were set up using characteristics of natural water systems (aquifers and rivers) in Bradford County, Pennsylvania. Results show that in clay-rich sandstone aquifers, ion exchange plays a key role in determining the maximum concentration and the time scale of released cations in receiving natural waters. In contrast, mineral dissolution and precipitation play a relatively minor role. The relative time scales of recovery τ rr, a dimensionless number defined as the ratio of the time needed to return to background concentrations over the residence time of natural waters, vary between 5 and 10 for Na, Ca, and Mg, and between 10 and 20 for Sr and Ba. In rivers and sand and gravel aquifers with negligible clay, τrr values are close to 1 because cations are flushed out at approximately one residence time. These values can be used as first order estimates of time scales of released MSW in natural water systems. This work emphasizes the importance of clay content and suggests that it is more likely to detect contamination in clay-rich geological formations. As a result, this work highlights the use of reactive transport modeling in understanding natural attenuation, guiding monitoring, and predicting impacts of contamination for risk assessment.« less

How long do natural waters “remember” release incidents of Marcellus Shale waters: a first order approximation using reactive transport modeling

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cai, Zhang; Li, Li

Natural gas production from the Marcellus Shale formation has significantly changed energy landscape in recent years. Accidental release, including spills, leakage, and seepage of the Marcellus Shale flow back and produced waters can impose risks on natural water resources. With many competing processes during the reactive transport of chemical species, it is not clear what processes are dominant and govern the impacts of accidental release of Marcellus Shale waters (MSW) into natural waters. Here we carry out numerical experiments to explore this largely unexploited aspect using cations from MSW as tracers with a focus on abiotic interactions between cations releasedmore » from MSW and natural water systems. Reactive transport models were set up using characteristics of natural water systems (aquifers and rivers) in Bradford County, Pennsylvania. Results show that in clay-rich sandstone aquifers, ion exchange plays a key role in determining the maximum concentration and the time scale of released cations in receiving natural waters. In contrast, mineral dissolution and precipitation play a relatively minor role. The relative time scales of recovery τ rr, a dimensionless number defined as the ratio of the time needed to return to background concentrations over the residence time of natural waters, vary between 5 and 10 for Na, Ca, and Mg, and between 10 and 20 for Sr and Ba. In rivers and sand and gravel aquifers with negligible clay, τrr values are close to 1 because cations are flushed out at approximately one residence time. These values can be used as first order estimates of time scales of released MSW in natural water systems. This work emphasizes the importance of clay content and suggests that it is more likely to detect contamination in clay-rich geological formations. As a result, this work highlights the use of reactive transport modeling in understanding natural attenuation, guiding monitoring, and predicting impacts of contamination for risk assessment.« less

extendFromReads

DOE Office of Scientific and Technical Information (OSTI.GOV)

Williams, Kelly P.

2013-10-03

This package assists in genome assembly. extendFromReads takes as input a set of Illumina (eg, MiSeq) DNA sequencing reads, a query seed sequence and a direction to extend the seed. The algorithm collects all seed-- ]matching reads (flipping reverse-- ]orientation hits), trims off the seed and additional sequence in the other direction, sorts the remaining sequences alphabetically, and prints them aligned without gaps from the point of seed trimming. This produces a visual display distinguishing the flanks of multi- ]copy seeds. A companion script hitMates.pl collects the mates of seed-- ]hi]ng reads, whose alignment reveals longer extensions from the seed.more » The collect/trim/sort strategy was made iterative and scaled up in the script denovo.pl, for de novo contig assembly. An index is pre-- ]built using indexReads.pl that for each unique 21-- ]mer found in all the reads, records its gfate h of extension (whether extendable, blocked by low coverage, or blocked by branching after a duplicated sequence) and other characteristics. Importantly, denovo.pl records all branchings that follow a branching contig endpoint, providing contig- ]extension information« less

Secure and robust cloud computing for high-throughput forensic microsatellite sequence analysis and databasing.

PubMed

Bailey, Sarah F; Scheible, Melissa K; Williams, Christopher; Silva, Deborah S B S; Hoggan, Marina; Eichman, Christopher; Faith, Seth A

2017-11-01

Next-generation Sequencing (NGS) is a rapidly evolving technology with demonstrated benefits for forensic genetic applications, and the strategies to analyze and manage the massive NGS datasets are currently in development. Here, the computing, data storage, connectivity, and security resources of the Cloud were evaluated as a model for forensic laboratory systems that produce NGS data. A complete front-to-end Cloud system was developed to upload, process, and interpret raw NGS data using a web browser dashboard. The system was extensible, demonstrating analysis capabilities of autosomal and Y-STRs from a variety of NGS instrumentation (Illumina MiniSeq and MiSeq, and Oxford Nanopore MinION). NGS data for STRs were concordant with standard reference materials previously characterized with capillary electrophoresis and Sanger sequencing. The computing power of the Cloud was implemented with on-demand auto-scaling to allow multiple file analysis in tandem. The system was designed to store resulting data in a relational database, amenable to downstream sample interpretations and databasing applications following the most recent guidelines in nomenclature for sequenced alleles. Lastly, a multi-layered Cloud security architecture was tested and showed that industry standards for securing data and computing resources were readily applied to the NGS system without disadvantageous effects for bioinformatic analysis, connectivity or data storage/retrieval. The results of this study demonstrate the feasibility of using Cloud-based systems for secured NGS data analysis, storage, databasing, and multi-user distributed connectivity. Copyright © 2017 Elsevier B.V. All rights reserved.

The ultimate mineral processing challenge: Recovery of rare earths, phosphorus and uranium from Florida phosphatic clay

DOE PAGES

Zhang, Patrick; Liang, Haijun; Jin, Zhen; ...

2017-11-01

We report phosphate beneficiation in Florida generates more than one tonne of phosphatic clay, or slime, per tonne of phosphate rock produced. Since the start of the practice of large-scale washing and desliming for phosphate beneficiation, more than 2 Gt of slime has accumulated, containing approximately 600 Mt of phosphate rock, 600 kt of rare earth elements (REEs) and 80 million kilograms of uranium. The recovery of these valuable elements from the phosphatic clay is one of the most challenging endeavors in mineral processing, because the clay is extremely dilute, with an average solids concentration of 3 percent, and finemore » in size, with more than 50 percent having particle size smaller than 2 μm, and it contains nearly 50 percent clay minerals as well as large amounts of magnesium, iron and aluminum. With industry support and under funding from the Critical Materials Institute, the Florida Industrial and Phosphate Research Institute in conjunction with the Oak Ridge National Laboratory undertook the task to recover phosphorus, rare earths and uranium from Florida phosphatic clay. This paper presents the results from the preliminary testing of two approaches. The first approach involves three-stage cycloning using cyclones with diameters of 12.4 cm (5 in.), 5.08 cm (2 in.) and 2.54 cm (1 in.), respectively, to remove clay minerals followed by flotation and leaching. The second approach is a two-step leaching process. In the first step, selective leaching was conducted to remove magnesium, thus allowing the production of phosphoric acid suitable for the manufacture of diammonium phosphate (DAP) in the second leaching step. The results showed that multistage cycloning with small cyclones is necessary to remove clay minerals. Finally, selective leaching at about pH 3.2 using sulfuric acid was found to be effective for removing more than 80 percent of magnesium from the feed with minimal loss of phosphorus.« less

The ultimate mineral processing challenge: Recovery of rare earths, phosphorus and uranium from Florida phosphatic clay

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhang, Patrick; Liang, Haijun; Jin, Zhen

We report phosphate beneficiation in Florida generates more than one tonne of phosphatic clay, or slime, per tonne of phosphate rock produced. Since the start of the practice of large-scale washing and desliming for phosphate beneficiation, more than 2 Gt of slime has accumulated, containing approximately 600 Mt of phosphate rock, 600 kt of rare earth elements (REEs) and 80 million kilograms of uranium. The recovery of these valuable elements from the phosphatic clay is one of the most challenging endeavors in mineral processing, because the clay is extremely dilute, with an average solids concentration of 3 percent, and finemore » in size, with more than 50 percent having particle size smaller than 2 μm, and it contains nearly 50 percent clay minerals as well as large amounts of magnesium, iron and aluminum. With industry support and under funding from the Critical Materials Institute, the Florida Industrial and Phosphate Research Institute in conjunction with the Oak Ridge National Laboratory undertook the task to recover phosphorus, rare earths and uranium from Florida phosphatic clay. This paper presents the results from the preliminary testing of two approaches. The first approach involves three-stage cycloning using cyclones with diameters of 12.4 cm (5 in.), 5.08 cm (2 in.) and 2.54 cm (1 in.), respectively, to remove clay minerals followed by flotation and leaching. The second approach is a two-step leaching process. In the first step, selective leaching was conducted to remove magnesium, thus allowing the production of phosphoric acid suitable for the manufacture of diammonium phosphate (DAP) in the second leaching step. The results showed that multistage cycloning with small cyclones is necessary to remove clay minerals. Finally, selective leaching at about pH 3.2 using sulfuric acid was found to be effective for removing more than 80 percent of magnesium from the feed with minimal loss of phosphorus.« less

Enhanced magnetization of the Marlboro Clay as a product of soil pyrogenesis at the Paleocene-Eocene boundary?

NASA Astrophysics Data System (ADS)

Kent, Dennis V.; Lanci, Luca; Wang, Huapei; Wright, James D.

2017-09-01

The kaolinite-rich Marlboro Clay was deposited on the inner shelf in the Salisbury Embayment of the U.S. Atlantic margin at the onset of the carbon isotope excursion marking the 56 Ma Paleocene-Eocene boundary and is characterized by an anomalously high concentration of magnetic nanoparticles of enigmatic origin that give rise to notably intense bulk magnetization. Recent studies point to a magnetic assemblage that is dominated by single-domain magnetite particles that tend to be isolated rather than arranged in chains, the most distinguishing feature of magnetotactic bacteria fossils. On the other hand, it is very unlikely that the nanoparticles can be condensates of an impact plume given the meter-scale thickness of the Marlboro Clay. We obtained new data from a landward proximal site at Wilson Lake on the New Jersey Coastal Plain and find that the abrupt increase in magnetite nanoparticles is virtually coincident stratigraphically with the recently reported impact spherule layer at the base of the Marlboro Clay in the same core. Yet the high field magnetic susceptibility, a measure of total iron concentration, and strontium isotope values on bulk sediment, an indicator of sediment weathering provenance, are not different in the Marlboro Clay from the immediately underlying Vincentown Formation. We suggest that the distinctive magnetic properties of the Marlboro Clay originated from pyromagnetic soil enhancement by widespread wildfires on the adjoining drainage area. The pyrogenetic products were soon washed from the denuded landscape and rapidly deposited as mud-waves across the shelf, becoming the Marlboro Clay. A few percent of incinerated biomass ends up as calcite known as wood ash stone and can inherit its light carbon isotope composition. Disseminated wood ash stone entrained in the Marlboro Clay could contribute to the landward increase in amplitude of the carbon isotope excursion in bulk carbonate data. A plausible trigger for the initial conflagration is a fireball from the impact of a sizable extraterrestrial object at moderate range.

Searching for Ancient Lakebeds in Ladon Basin, Mars and Implications for Future Exploration

NASA Astrophysics Data System (ADS)

Colón, A. M.; Miranda, C.; Milliken, R.

2017-12-01

It is well known from terrestrial studies that clay-rich rocks, and lacustrine mudstones in particular, are efficient at trapping, binding, and preserving organic matter through geologic time. This has also been demonstrated on Mars, where the Curiosity rover has detected organics in ancient mudstones in Gale crater. A number of other potential ancient lake sites have been proposed as landing sties for the Mars 2020 rover, including regions within the Ladon Basin and Valles system. In this study we map of the distribution of clay deposits in the Uzboi-Morava-Ladon (ULM) System, a system thought to have been a series of lakes interconnected by channels, and assess how these hydrous minerals relate to topography, adjacent fluvial networks, and the overall stratigraphy of basin deposits. We use CTX images and near-IR spectral reflectance data from the Mars Reconnaissance Orbiter CRISM instrument to independently map morphological and mineralogical features within Ladon. We find a number of occurrences of stratified, light-toned outcrops within the basin, but individual outcrops are small even at the scale of CTX images and are concentrated in several locations in the basin. Some light-toned outcrops are associated with clay minerals, but in general the light-toned appearance appears to be a poor proxy for clay distribution. CRISM data reveal that some clay-bearing regions are visually indistinct from adjacent clay-poor terrains. Some of the best examples of stratified, clay-bearing rocks are found in Ladon Valles, where they occur in terraces. In general, the stratigraphic, topographic, and morphologic evidence do not preclude a lacustrine origin, but there is no diagnostic evidence to support this interpretation either. The clay-bearing and light-toned deposits within Ladon basin may instead reflect deposition in an alluvial/fluvial system that post-dates the peak period of inferred lacustrine activity in the ULM system.

On the relation between fluvio-deltaic flood basin geomorphology and the wide-spread occurrence of arsenic pollution in shallow aquifers.

PubMed

Donselaar, Marinus E; Bhatt, Ajay G; Ghosh, Ashok K

2017-01-01

Pollution of groundwater with natural (geogenic) arsenic occurs on an enormous, world-wide scale, and causes wide-spread, serious health risks for an estimated more than hundred million people who depend on the use of shallow aquifers for drinking and irrigation water. A literature review of key studies on arsenic concentration levels yields that Holocene fluvial and deltaic flood basins are the hotspots of arsenic pollution, and that the dominant geomorphological setting of the arsenic-polluted areas consists of shallow-depth meandering-river deposits with sand-prone fluvial point-bar deposits surrounded by clay-filled (clay plug) abandoned meander bends (oxbow lakes). Analysis of the lithofacies distribution and related permeability contrasts of the geomorphological elements in two cored wells in a point bar and adjacent clay plug along the Ganges River, in combination with data of arsenic concentrations and organic matter content reveals that the low-permeable clay-plug deposits have a high organic matter content and the adjacent permeable point-bar sands show high but spatially very variable arsenic concentrations. On the basis of the geomorphological juxtaposition, the analysis of fluvial depositional processes and lithofacies characteristics, inherent permeability distribution and the omnipresence of the two geomorphological elements in Holocene flood basins around the world, a generic model is presented for the wide-spread arsenic occurrence. The anoxic deeper part (hypolimnion) of the oxbow lake, and the clay plugs are identified as the loci of reactive organic carbon and microbial respiration in an anoxic environment that triggers the reductive dissolution of iron oxy-hydroxides and the release of arsenic on the scale of entire fluvial floodplains and deltaic basins. The adjacent permeable point-bar sands are identified as the effective trap for the dissolved arsenic, and the internal permeability heterogeneity is the cause for aquifer compartmentalization, with large arsenic concentration differences between neighboring compartments. Copyright © 2016 Elsevier B.V. All rights reserved.

Supply-Limited Bedforms in a Gravel-Sand Transition

NASA Astrophysics Data System (ADS)

Venditti, J. G.; Nittrouer, J. A.; Humphries, R. P.; Allison, M. A.

2009-12-01

Rivers often exhibit an abrupt transition from gravel to sand-bedded conditions as river channel slopes decrease. A distinct suite of bedforms has been observed through these reaches where sand supply to the bed is limited. The suite of bedforms includes a sequence of sand ribbons, barchans, and channel spanning dunes as sediment supply increases in the downstream direction. While these bedforms have been extensively documented in laboratory channels, there are relatively few observations of this sequence of supply-limited bedforms from large natural channels. Here we examine the sequence through the gravel-sand transition of the Fraser River in Southwestern British Columbia. We mapped the bed using multi-beam swath-bathymetry (Reson 8101 Seabat) at high flow (~9,000 m3s-1) immediately following a high peak flow of 11,800 m3s-1 in June 2007 The bed material grades from >70% gravel to entirely sand through the reach. The bedforms follow the expected sequence where sand ribbons and barchanoid forms cover the bed where it is primarily gravel. Channel spanning dunes form as the sand bed coverage increases. Bedform dimensions (height and length) increase moving downstream as the sand moving on the bed increases. Supply-unlimited bedforms typically scale with the flow depth where the height is 1/5 the flow depth. The bedforms developed over the gravel are undersized by this criterion. Downstream, where the bed is dominantly sand, bedforms do scale with flow depth. These data highlight the dominant role sediment supply can play in bedform morphology and scaling, confirming patterns observed in laboratory data.

Creeping Guanxian-Anxian Fault ruptured in the 2008 Mw 7.9 Wenchuan earthquake

NASA Astrophysics Data System (ADS)

He, X.; Li, H.; Wang, H.; Zhang, L.; Si, J.

2017-12-01

Crustal active faults can slide either steadily by aseismic creep, or abruptly by earthquake rupture. Creep can relax continuously the stress and reduce the occurrence of large earthquakes. Identifying the behaviors of active faults plays a crucial role in predicting and preventing earthquake disasters. Based on multi-scale structural analyses for fault rocks from the GAF surface rupture zone and the Wenchuan Earthquake Fault Zone Science Drilling borehole 3P, we detect the analogous "mylonite structures" develop pervasively in GAF fault rocks. Such specious "ductile deformations", showing intensive foliation, spindly clasts, tailing structure, "boudin structure", "augen structure" and S-C fabrics, are actually formed in brittle faulting, which indicates the creeping behavior of the GAF. Furthermore, some special structures hint the creeping mechanism. The cracks and veins developed in fractured clasts imply pressure and fluid control in the faulting. Under the effect of fluid, clasts are dissolved in pressing direction, and solutions are transferred to stress vacancy area at both ends of clasts and deposit to regenerate clay minerals. The clasts thus present spindly shape and are surrounded by orientational clay minerals constituting continuous foliation structure. The clay minerals are dominated by phyllosilicates that can weaken faults and promote pressure solution. Therefore, pressure solution creep and phyllosilicates weakening reasonably interpret the creeping of GAF. Additionally, GPS velocity data show slip rates of the GAF are respectively 1.5 and 12 mm/yr during 1998-2008 and 2009-2011, which also indicate the GAF is in creeping during interseismic period. According to analysis on aftershocks distribution and P-wave velocity with depth and geological section in the Longmenshan thrust belt, we suggest the GAF is creeping in shallow (<10 km) and locked in deep (10-20 km). Comprehensive research shows stress propagated from the west was concentrated near the Yingxiu-Beichuan Fault (YBF) and GAF zones. As stress accumulation reached the limit, the YBF and GAF zones were simultaneously ruptured in 2008 Mw 7.9 Wenchuan earthquake, but the rupture area of the GAF was relatively small due to the presence of shallow creep that relaxed the partial stress.

PEG-PE/clay composite carriers for doxorubicin: Effect of composite structure on release, cell interaction and cytotoxicity.

PubMed

Kohay, Hagay; Sarisozen, Can; Sawant, Rupa; Jhaveri, Aditi; Torchilin, Vladimir P; Mishael, Yael G

2017-06-01

A novel drug delivery system for doxorubicin (DOX), based on organic-inorganic composites was developed. DOX was incorporated in micelles (M-DOX) of polyethylene glycol-phosphatidylethanolamine (PEG-PE) which in turn were adsorbed by the clay, montmorillonite (MMT). The nano-structures of the PEG-PE/MMT composites of LOW and HIGH polymer loadings were characterized by XRD, TGA, FTIR, size (DLS) and zeta measurements. These measurements suggest that for the LOW composite a single layer of polymer intercalates in the clay platelets and the polymer only partially covers the external surface, while for the HIGH composite two layers of polymer intercalate and a bilayer may form on the external surface. These nanostructures have a direct effect on formulation stability and on the rate of DOX release. The release rate was reversely correlated with the degree of DOX interaction with the clay and followed the sequence: M-DOX>HIGH formulation>LOW formulation>DOX/MMT. Despite the slower release from the HIGH formulation, its cytotoxicity effect on sensitive cells was as high as the "free" DOX. Surprisingly, the LOW formulation, with the slowest release, demonstrated the highest cytotoxicity in the case of Adriamycin (ADR) resistant cells. Confocal microscopy images and association tests provided an insight into the contribution of formulation-cell interactions vs. the contribution of DOX release rate. Internalization of the formulations was suggested as a mechanism that increases DOX efficiency, particularly in the ADR resistant cell line. The employment of organic-inorganic hybrid materials as drug delivery systems, has not reached its full potential, however, its functionality as an efficient tunable release system was demonstrated. DOX PEG-PE/clay formulations were design as an efficient drug delivery system. The main aim was to develop PEG-PE/clay formulations of different structures based on various PEG-PE/clay ratios in order to achieve tunable release rates, to control the external surface characteristics and formulation stability. The formulations showed significantly higher toxicity in comparison to "free" DOX, explained by formulation internalization. For each cell line tested, sensitive and ADR resistant, a different formulation structure was found most efficient. The potential of PEG-PE/clay-DOX formulations to improve DOX administration efficacy was demonstrated and should be further explored and implemented for other cancer drugs and cells. Copyright © 2017 Acta Materialia Inc. Published by Elsevier Ltd. All rights reserved.

Multiple echo multi-shot diffusion sequence.

PubMed

Chabert, Steren; Galindo, César; Tejos, Cristian; Uribe, Sergio A

2014-04-01

To measure both transversal relaxation time (T2 ) and diffusion coefficients within a single scan using a multi-shot approach. Both measurements have drawn interest in many applications, especially in skeletal muscle studies, which have short T2 values. Multiple echo single-shot schemes have been proposed to obtain those variables simultaneously within a single scan, resulting in a reduction of the scanning time. However, one problem with those approaches is the associated long echo read-out. Consequently, the minimum achievable echo time tends to be long, limiting the application of these sequences to tissues with relatively long T2 . To address this problem, we propose to extend the multi-echo sequences using a multi-shot approach, so that to allow shorter echo times. A multi-shot dual-echo EPI sequence with diffusion gradients and echo navigators was modified to include independent diffusion gradients in any of the two echoes. The multi-shot approach allows us to drastically reduce echo times. Results showed a good agreement for the T2 and mean diffusivity measurements with gold standard sequences in phantoms and in vivo data of calf muscles from healthy volunteers. A fast and accurate method is proposed to measure T2 and diffusion coefficients simultaneously, tested in vitro and in healthy volunteers. Copyright © 2013 Wiley Periodicals, Inc.

Excavation Induced Hydraulic Response of Opalinus Clay - Investigations of the FE-Experiment at the Mont Terri URL in Switzerland

NASA Astrophysics Data System (ADS)

Vogt, T.; Müller, H. R.; Garitte, B.; Sakaki, T.; Vietor, T.

2013-12-01

The Full-Scale Emplacement (FE) Experiment at the Mont Terri underground research laboratory in Switzerland is a full-scale heater test in a clay-rich formation (Opalinus Clay). Based on the Swiss disposal concept it simulates the construction, emplacement, backfilling, and post-closure thermo-hydro-mechanical (THM) evolution of a spent fuel / vitrified high-level waste (SF / HLW) repository tunnel in a realistic manner. The main aim of this experiment is to investigate SF / HLW repository-induced THM coupled effects mainly in the host rock but also in the engineered barrier system (EBS), which consists of bentonite pellets and blocks. A further aim is to gather experience with full-scale tunnel construction and associated hydro-mechanical (HM) processes in the host rock. The entire experiment implementation (in a 50 m long gallery with approx. 3 m diameter) as well as the post-closure THM evolution will be monitored using a network of several hundred sensors (state-of-the-art sensors and measurement systems as well as fiber-optic sensors). The sensors are distributed in the host rock's near- and far-field, the tunnel lining, the EBS, and on the heaters. The heater emplacement and backfilling has not started yet, therefore only the host rock instrumentation is installed at the moment and is currently generating data. We will present the instrumentation concept and rationale as well as the first monitoring results of the excavation and ventilation phase. In particular, we investigated the excavation induced hydraulic response of the host rock. Therefore, the spatiotemporal evolution of porewater-pressure time series was analyzed to get a better understanding of HM coupled processes during and after the excavation phase as well as the impact of anisotropic geomechanic and hydraulic properties of the clay-rich formation on its hydraulic behavior. Excavation related investigations were completed by means of inclinometer data to characterize the non-elastic and time-dependent deformations. In addition, we evaluated the effect of drainage and suction processes during the ventilation phase on the pressure distribution in the host rock. Based on our results the conceptual models of HM processes and hydraulic behavior of clay rich formations during excavation and ventilation phases could be improved.

Impacts of Pantoea agglomerans strain and cation-modified clay minerals on the adsorption and biodegradation of phenanthrene.

PubMed

Tao, Kelin; Zhao, Song; Gao, Pin; Wang, Lijin; Jia, Hanzhong

2018-06-06

Interactions between microorganisms and minerals have the potential contribution to remove polycyclic aromatic hydrocarbons (PAHs) in model systems. In this study, phenanthrene (PHE) was used as a probe molecule to explore the potential adsorption and biotransformation processes in the presence of microorganisms and various reference clays, such as montmorillonite (M), kaolinite (K), and pyrophyllite (P). Equilibrium adsorption experiments and scanning electron microscopy (SEM) technique were used to investigate the sorption of Pantoea agglomerans strains on clay minerals saturated with cations (Na + and Fe 3+ ). The adsorption isotherms of PHE and Pantoea agglomerans strains on cation-modified clay minerals fitted to Langmuir equation, and their adsorbed amounts both followed the sequence: montmorillonite > kaolinite > pyrophyllite. For six types of cation-modified minerals, the behavior of PHE adsorbed and Pantoea agglomerans adhered onto mentioned minerals was in the order of Na(I)-M > Fe(Ⅲ)-M, Na(I)-K > Fe(Ⅲ)-K and Fe(Ⅲ)-P > Na(I)-P, respectively. The biodegradation results showed that cation-modified clay minerals could enhance the biodegradation of PHE, ascribing to their large specific surface area, and cation exchange capability, as well as the difference in zeta potential between minerals and Pantoea agglomerans strains. Comparison of biodegradation rates displayed that PHE was degraded the highest in the presence of Na-M (93.285%). In addition, the obtained results suggested that the adhesion of bacteria onto cation-exchanged clay minerals was beneficial to the biodegradation of PHE. Anthracen-9-ylmethanol and 3,4-dimethyl-2-(3-methylbutanoyl)benzoic acid were detected as the main intermediate compounds, which can be further biodegraded into small molecules. The overall results obtained in this study are of valuable significance for the understanding of the behavior of PHE in soil and associated environment. Copyright © 2018 Elsevier Inc. All rights reserved.

Investigating Interactions between the Silica and Carbon Cycles during Precipitation and Early Diagenesis of Authigenic Clay/Carbonate-Mineral Associations in the Carbonate Rock Record

NASA Astrophysics Data System (ADS)

McKenzie, J. A.; Francisca Martinez Ruiz, F.; Sanchez-Roman, M.; Anjos, S.; Bontognali, T. R. R.; Nascimento, G. S.; Vasconcelos, C.

2017-12-01

The study of authigenic clay/carbonate-mineral associations within carbonate sequences has important implications for the interpretation of scientific problems related with rock reservoir properties, such as alteration of potential porosity and permeability. More specifically, when clay minerals are randomly distributed within the carbonate matrix, it becomes difficult to predict reservoir characteristics. In order to understand this mineral association in the geological record, we have undertaken a comparative study of specially designed laboratory experiments with modern environments, where clay minerals have been shown to precipitate together with a range of carbonate minerals, including calcite, Mg-calcite and dolomite. Two modern dolomite-forming environments, the Coorong lakes, South Australia and Brejo do Espinho Rio de Janeiro, Brazil, were selected for this investigation. For comparative evaluation, enrichment microbial culture experiments, using natural pore water from Brejo do Espinho as the growth medium to promote mineral precipitation, were performed under both aerobic and anaerobic conditions. To establish the environmental parameters and biological processes facilitating the dual mineral association, the experimental samples have been compared with the natural minerals using HRTEM measurements. The results demonstrate that the clay and carbonate minerals apparently do not co-precipitate, but the precipitation of the different minerals in the same sample has probably occurred under different environmental conditions with variable chemistries, e.g., hypersalinity versus normal salinity resulting from the changing ratio of evaporation versus precipitation. Thus, the investigated mineral association is not a product of diagenetic processes but of sequential in situ precipitation processes related to changes in the silica and carbon availability. Implications for ancient carbonate formations will be presented and discussed in the context of a specific example of this clay/carbonate-mineral association recorded in the Lower Cretaceous Codó Formation, NE Brazil (Bahniuk et al., 2015. Sedimentology, 62, 155-181).

Interfacial reactions between humic-like substances and lateritic clay: application to the preparation of "geomimetic" materials.

PubMed

Goure-Doubi, Herve; Martias, Céline; Lecomte-Nana, Gisèle Laure; Nait-Ali, Benoît; Smith, Agnès; Thune, Elsa; Villandier, Nicolas; Gloaguen, Vincent; Soubrand, Marilyne; Konan, Léon koffi

2014-11-15

The aim of this study was to understand the mechanisms responsible for the strengthening of "geomimetic" materials, especially the chemical bonding between clay and humic substances. The mineral matter is lateritic clay which mainly consists in kaolinite, goethite, hematite and quartz. The other starting products are fulvic acid (FA) and lime. The preparation of these geomimetic materials is inspired from the natural stabilization of soils by humic substances occurring over thousands of years. The present process involves acidic and alkaline reactions followed by a curing period of 18days at 60°C under a water saturated atmosphere. The acceleration of the strengthening process usually observed in soils makes this an original process for treatment of soils. The consolidation of the "geomimetic" materials could result from two major phenomena: (i) chemical bonding at the interface between the clay particles and iron compounds and the functional groups of the fulvic acid, (ii) a partial dissolution of the clay grains followed by the precipitation of the cementitious phases, namely calcium silicate hydrates, calcium aluminate hydrates and mixed calcium silicum and aluminum hydrates. Indeed, the decrease of the BET specific area of the lateritic clay after 24 h of reaction with FA added to the structural reorganization observed between 900 and 1000°C in the "geomimetic" material, and to the results of adsorption measurements, confirm the formation of organo-ferric complexes. The presence of iron oxides in clay, in the form of goethite, appears to be another parameter in favor of a ligand exchange process and the creation of binding bridges between FA and the mineral matter. Indeed all faces of goethite are likely to be involved in complexation reactions whereas in lateritic clay only lateral faces could be involved. The results of the adsorption experiments realized at a local scale will improve our understandings about the process of adsorption of FA on lateritic clays and its involvement in the strengthening process of materials. Copyright © 2014 Elsevier Inc. All rights reserved.

Distributed Optimization of Multi-Agent Systems: Framework, Local Optimizer, and Applications

NASA Astrophysics Data System (ADS)

Zu, Yue

Convex optimization problem can be solved in a centralized or distributed manner. Compared with centralized methods based on single-agent system, distributed algorithms rely on multi-agent systems with information exchanging among connected neighbors, which leads to great improvement on the system fault tolerance. Thus, a task within multi-agent system can be completed with presence of partial agent failures. By problem decomposition, a large-scale problem can be divided into a set of small-scale sub-problems that can be solved in sequence/parallel. Hence, the computational complexity is greatly reduced by distributed algorithm in multi-agent system. Moreover, distributed algorithm allows data collected and stored in a distributed fashion, which successfully overcomes the drawbacks of using multicast due to the bandwidth limitation. Distributed algorithm has been applied in solving a variety of real-world problems. Our research focuses on the framework and local optimizer design in practical engineering applications. In the first one, we propose a multi-sensor and multi-agent scheme for spatial motion estimation of a rigid body. Estimation performance is improved in terms of accuracy and convergence speed. Second, we develop a cyber-physical system and implement distributed computation devices to optimize the in-building evacuation path when hazard occurs. The proposed Bellman-Ford Dual-Subgradient path planning method relieves the congestion in corridor and the exit areas. At last, highway traffic flow is managed by adjusting speed limits to minimize the fuel consumption and travel time in the third project. Optimal control strategy is designed through both centralized and distributed algorithm based on convex problem formulation. Moreover, a hybrid control scheme is presented for highway network travel time minimization. Compared with no controlled case or conventional highway traffic control strategy, the proposed hybrid control strategy greatly reduces total travel time on test highway network.

Mössbauer spectroscopic study of the test well (DND) located in Jaisalmer Basin of Rajasthan, India

NASA Astrophysics Data System (ADS)

Ganwani, Girish; Meena, Samay Singh; Ram, Sahi; Bhatia, Beena; Tripathi, R. P.

2018-05-01

The Jaisalmer basin represents mainly the westerly dipping flank of Indus shelf. The palynological and geochemical studies have predicted good quality of hydrocarbons in this basin. The cretaceous and Jurassic sediments are believed to contain source rock in this basin. In present preliminary study, Mössbauer spectroscopic investigation has been done on sedimentary samples collected from different depths of upper cretaceous sedimentary sequence of well DND-1 drilled in Jaisalmer basin. The iron is found mainly in carbonate and clay. The relatively small presence of Fe2+ in comparison to Fe3+ in clay is an indication of poor reducing environment in sediments, which can be attributed to poor maturity of source rocks in upper cretaceous sediments of this basin.

Implementation into earthquake sequence simulations of a rate- and state-dependent friction law incorporating pressure solution creep

NASA Astrophysics Data System (ADS)

Noda, H.

2016-05-01

Pressure solution creep (PSC) is an important elementary process in rock friction at high temperatures where solubilities of rock-forming minerals are significantly large. It significantly changes the frictional resistance and enhances time-dependent strengthening. A recent microphysical model for PSC-involved friction of clay-quartz mixtures, which can explain a transition between dilatant and non-dilatant deformation (d-nd transition), was modified here and implemented in dynamic earthquake sequence simulations. The original model resulted in essentially a kind of rate- and state-dependent friction (RSF) law, but assumed a constant friction coefficient for clay resulting in zero instantaneous rate dependency in the dilatant regime. In this study, an instantaneous rate dependency for the clay friction coefficient was introduced, consistent with experiments, resulting in a friction law suitable for earthquake sequence simulations. In addition, a term for time-dependent strengthening due to PSC was added which makes the friction law logarithmically rate-weakening in the dilatant regime. The width of the zone in which clasts overlap or, equivalently, the interface porosity involved in PSC plays a role as the state variable. Such a concrete physical meaning of the state variable is a great advantage in future modelling studies incorporating other physical processes such as hydraulic effects. Earthquake sequence simulations with different pore pressure distributions demonstrated that excess pore pressure at depth causes deeper rupture propagation with smaller slip per event and a shorter recurrence interval. The simulated ruptures were arrested a few kilometres below the point of pre-seismic peak stress at the d-nd transition and did not propagate spontaneously into the region of pre-seismic non-dilatant deformation. PSC weakens the fault against slow deformation and thus such a region cannot produce a dynamic stress drop. Dynamic rupture propagation further down to brittle-plastic transition, evidenced by geological observations, would require even smaller frictional resistance at coseismic slip rate, suggesting the importance of implementation of dynamic weakening activated at coseismic slip rates for more realistic simulation of earthquake sequences. The present models produced much smaller afterslip at deeper parts of arrested ruptures than those with logarithmic RSF laws because of a more significant rate-strengthening effect due to linearly viscous PSC. Detailed investigation of afterslip would give a clue to understand the deformation mechanism which controls shear resistance of the fault in a region of arrest of earthquake ruptures.

A New Perspective on Polyploid Fragaria (Strawberry) Genome Composition Based on Large-Scale, Multi-Locus Phylogenetic Analysis

PubMed Central

Yang, Yilong

2017-01-01

Abstract The subgenomic compositions of the octoploid (2n = 8× = 56) strawberry (Fragaria) species, including the economically important cultivated species Fragaria x ananassa, have been a topic of long-standing interest. Phylogenomic approaches utilizing next-generation sequencing technologies offer a new window into species relationships and the subgenomic compositions of polyploids. We have conducted a large-scale phylogenetic analysis of Fragaria (strawberry) species using the Fluidigm Access Array system and 454 sequencing platform. About 24 single-copy or low-copy nuclear genes distributed across the genome were amplified and sequenced from 96 genomic DNA samples representing 16 Fragaria species from diploid (2×) to decaploid (10×), including the most extensive sampling of octoploid taxa yet reported. Individual gene trees were constructed by different tree-building methods. Mosaic genomic structures of diploid Fragaria species consisting of sequences at different phylogenetic positions were observed. Our findings support the presence in octoploid species of genetic signatures from at least five diploid ancestors (F. vesca, F. iinumae, F. bucharica, F. viridis, and at least one additional allele contributor of unknown identity), and questions the extent to which distinct subgenomes are preserved over evolutionary time in the allopolyploid Fragaria species. In addition, our data support divergence between the two wild octoploid species, F. virginiana and F. chiloensis. PMID:29045639

Elaboration et caracterisation de nanocomposites polyethylene/montmorillonite

NASA Astrophysics Data System (ADS)

Stoeffler, Karen

This research project consists in preparing polyethylene/montmorillonite nanocomposites for film packaging applications. Montmorillonite is a natural clay with an exceptional aspect ratio. In recent years, its incorporation in polymer matrices has attracted great interest. The pioneer work from Toyota on polyamide-6/montmorillonite composites has shown that it was possible to disperse the clay at a nanometric scale. Such a structure, so-called exfoliated, leads to a significant increase in mechanical, barrier and fire retardant properties, even at low volumetric fractions of clay. This allows a valorization of the polymeric material at moderate cost. Due to its high polarity, montmorilloite exfoliation in polymeric matrices is problematic. In the particular case of polyolefin matrices, the platelets dispersion remains limited: most frequently, the composites obtained exhibit conventional structures (microcomposites) or intercalated structures. To solve this problem, two techniques are commonly employed: the surface treatment of the clay, which allows the expansion of the interfoliar gallery while increasing the affinity between the clay and the polymer, and the use of a polar compatibilizing agent (grafted polyolefin). The first part of this thesis deals with the preparation and the characterization of highly thermally stable organophilic montmorillonites. Commercial organophilic montmorillonites are treated with quaternary ammonium intercalating agents. However, those intercalating agents present a poor thermal stability and are susceptible to decompose upon processing, thus affecting the clay dispersion and the final properties of the nanocomposites. In this work, it was proposed to modify the clay with alkyl pyridinium, alkyl imidazolium and alkyl phosphonium intercalating agents, which are more stable than ammonium based cations. Organophilic montmorillonites with enhanced thermal stabilites compared to commercial organoclays (+20°C to +70°C) were prepared. The effect of the chemical structure of the intercalating agent on the capacity of the organoclay to be dispersed in polyethylene matrices was analyzed. In addition, the influence of the dispersion on the thermal stability of the nanocomposites prepared is discussed. In a second part, the effect of the compatibilizing agent characteristics on the quality of the clay dispersion in polyethylene/montmorillonite nanocomposites was analyzed. The mechanical properties and the oxygen permeability of the nanocomposites were evaluated and related to the level of clay delamination and to the strength of the polymer/clay interface, which was evaluated through surface tension measurements.

Hydrate-Bearing Clayey Sediments: Morphology, Physical Properties, Production and Engineering/Geological Implications

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dai, Sheng; Santamarina, J. Carlos

Fine-grained sediments host more than 90 percent of global gas hydrate accumulation. However, hydrate formation in clay-dominated sediments is less understood and characterized than other types of hydrate occurrence. There is an inadequate understanding of hydrate formation mechanisms, segregation structures, hydrate lens topology, system connectivity, and physical macro-scale properties of clay-dominated hydrate-bearing sediments. This situation hinders further analyses of the global carbon budget as well as engineering challenges/solutions related to hydrate instability and production. This project studies hydrate-bearing clay-dominated sediments with emphasis on the enhanced fundamental understanding of hydrate formation and resulting morphology, the development laboratory techniques to emulate naturalmore » hydrate formations, the assessment of analytical tools to predict physical properties, the evaluation of engineering and geological implications, and the advanced understanding of gas production potential from finegrained sediments.« less

Production Task Queue Optimization Based on Multi-Attribute Evaluation for Complex Product Assembly Workshop.

PubMed

Li, Lian-Hui; Mo, Rong

2015-01-01

The production task queue has a great significance for manufacturing resource allocation and scheduling decision. Man-made qualitative queue optimization method has a poor effect and makes the application difficult. A production task queue optimization method is proposed based on multi-attribute evaluation. According to the task attributes, the hierarchical multi-attribute model is established and the indicator quantization methods are given. To calculate the objective indicator weight, criteria importance through intercriteria correlation (CRITIC) is selected from three usual methods. To calculate the subjective indicator weight, BP neural network is used to determine the judge importance degree, and then the trapezoid fuzzy scale-rough AHP considering the judge importance degree is put forward. The balanced weight, which integrates the objective weight and the subjective weight, is calculated base on multi-weight contribution balance model. The technique for order preference by similarity to an ideal solution (TOPSIS) improved by replacing Euclidean distance with relative entropy distance is used to sequence the tasks and optimize the queue by the weighted indicator value. A case study is given to illustrate its correctness and feasibility.

Production Task Queue Optimization Based on Multi-Attribute Evaluation for Complex Product Assembly Workshop

PubMed Central

Li, Lian-hui; Mo, Rong

2015-01-01

The production task queue has a great significance for manufacturing resource allocation and scheduling decision. Man-made qualitative queue optimization method has a poor effect and makes the application difficult. A production task queue optimization method is proposed based on multi-attribute evaluation. According to the task attributes, the hierarchical multi-attribute model is established and the indicator quantization methods are given. To calculate the objective indicator weight, criteria importance through intercriteria correlation (CRITIC) is selected from three usual methods. To calculate the subjective indicator weight, BP neural network is used to determine the judge importance degree, and then the trapezoid fuzzy scale-rough AHP considering the judge importance degree is put forward. The balanced weight, which integrates the objective weight and the subjective weight, is calculated base on multi-weight contribution balance model. The technique for order preference by similarity to an ideal solution (TOPSIS) improved by replacing Euclidean distance with relative entropy distance is used to sequence the tasks and optimize the queue by the weighted indicator value. A case study is given to illustrate its correctness and feasibility. PMID:26414758

Analysis of ground penetrating radar data from the tunnel beneath the Temple of the Feathered Serpent in Teotihuacan, Mexico, using new multi-cross algorithms

NASA Astrophysics Data System (ADS)

López-Rodríguez, Flor; Velasco-Herrera, Víctor M.; Álvarez-Béjar, Román; Gómez-Chávez, Sergio; Gazzola, Julie

2016-11-01

The ground penetrating radar (GPR) -a non-invasive method based on the emission of electromagnetic waves and the reception of their reflections at the dielectric constant and electrical conductivity discontinuities of the materials surveyed- may be applied instead of the destructive and invasive methods used to find water in celestial bodies. As multichannel equipment is increasingly used, we developed two algorithms for multivariable wavelet analysis of GPR signals -multi-cross wavelet (MCW) and Fourier multi-cross function (FMC)- and applied them to analyze raw GPR traces of archeological subsurface strata. The traces were from the tunnel located beneath the Temple of the Feathered Serpent (The Citadel, Teotihuacan, Mexico), believed to represent the underworld, an outstanding region of the Mesoamerican mythology, home of telluric forces emanating from deities, where life was constantly created and recreated. GPR profiles obtained with 100 MHz antennas suggested the tunnel is 12-14 m deep and 100-120 m long with three chambers at its end, interpretations that were confirmed by excavations in 2014. Archeologists believe that due to the tunnel's sacredness and importance, one of the chambers may be the tomb of a ruler of the ancient city. The MCW and FMC algorithms determined the periods of subsurface strata of the tunnel. GPR traces inside-and-outside the tunnel/chamber, outside the tunnel/chamber and inside the tunnel/chamber analyzed with the MCW and filtered FMC algorithms determined the periods of the tunnel and chamber fillings, clay and matrix (limestone-clay compound). The tunnel filling period obtained by MCW analysis (14.37 ns) reflects the mixed limestone-clay compound of this stratum since its value is close to that of the period of the matrix (15.22 ns); periods of the chamber filling (11.40 ± 0.40 ns) and the matrix (11.40 ± 1.00 ns) were almost identical. FMC analysis of the tunnel obtained a period (5.08 ± 1.08 ns) close to that of the chamber (4.27 ± 0.82 ns), suggesting the tunnel and chamber are filled with similar materials. The use of both algorithms allows a deeper analysis since the similarities of the tunnel and chamber filling periods could not have been determined with the MCW algorithm alone. The successful application of the new multi-cross algorithms to archeological GPR data suggests they may also be used to search water and other resources in celestial bodies.

Complex Structures in Sediments Overlying Sinkholes: 3D-GPR and Azimuthal Resistivity Imaging

NASA Astrophysics Data System (ADS)

Kruse, S.; Kiflu, H. G.; Ammar, A. I., Sr.; Karashay, P., III; Marshall, A. M.; McNiff, C. M.

2014-12-01

3D GPR surveys in the covered karst terrain of west-central Florida, USA, reveal surprising geometries of surficial sediments. Several meters of surficial sands overlie progressively more clay-rich sediments, which in turn overlie weathered limestone. The top of a clay-rich horizon produces an exceptionally clear GPR reflector visible from depths between 0.5 and ~8 meters. On length scales of 10-20 meters, the geometry of this horizon as it drapes over underlying weathered limestone suggests that depressions are not conical, but instead more complex troughs that surround domed stratigraphic highs. Azimuthal semi-variograms of the clay horizon depth show greatest correlation in directions that are aligned with the direction of elevated resistivities at depths to 10-14 meters. One possible interpretation is that dissolution in underlying limestone is concentrated in elongated zones rather than in columnar or spherical voids. Elongated sand-filled depressions in the clay layer produce azimuthal resistivity highs in the direction of the elongation. This direction in turn corresponds to the major axis of depressions in the clay-rich GPR reflecting horizon. Groundwater recharge in this area is concentrated into conduits that breach the clay-rich units that overlie the limestone aquifer. This study suggests that the conduits themselves may be elongated features rather than cylindrical in form. Recharge flow paths may be more complex than previously recognized. The high-resolution GPR images require 3D surveys with 250 MHz and 500 MHz antennas, with 10-cm line spacings, careful corrections for antenna positions and 3D migrations of the data.

Modeling Coupled Processes in Clay Formations for Radioactive Waste Disposal

DOE Office of Scientific and Technical Information (OSTI.GOV)

Liu, Hui-Hai; Rutqvist, Jonny; Zheng, Liange

As a result of the termination of the Yucca Mountain Project, the United States Department of Energy (DOE) has started to explore various alternative avenues for the disposition of used nuclear fuel and nuclear waste. The overall scope of the investigation includes temporary storage, transportation issues, permanent disposal, various nuclear fuel types, processing alternatives, and resulting waste streams. Although geologic disposal is not the only alternative, it is still the leading candidate for permanent disposal. The realm of geologic disposal also offers a range of geologic environments that may be considered, among those clay shale formations. Figure 1-1 presents themore » distribution of clay/shale formations within the USA. Clay rock/shale has been considered as potential host rock for geological disposal of high-level nuclear waste throughout the world, because of its low permeability, low diffusion coefficient, high retention capacity for radionuclides, and capability to self-seal fractures induced by tunnel excavation. For example, Callovo-Oxfordian argillites at the Bure site, France (Fouche et al., 2004), Toarcian argillites at the Tournemire site, France (Patriarche et al., 2004), Opalinus clay at the Mont Terri site, Switzerland (Meier et al., 2000), and Boom clay at Mol site, Belgium (Barnichon et al., 2005) have all been under intensive scientific investigations (at both field and laboratory scales) for understanding a variety of rock properties and their relations with flow and transport processes associated with geological disposal of nuclear waste. Clay/shale formations may be generally classified as indurated and plastic clays (Tsang et al., 2005). The latter (including Boom clay) is a softer material without high cohesion; its deformation is dominantly plastic. For both clay rocks, coupled thermal, hydrological, mechanical and chemical (THMC) processes are expected to have a significant impact on the long-term safety of a clay repository. For example, the excavation-damaged zone (EDZ) near repository tunnels can modify local permeability (resulting from induced fractures), potentially leading to less confinement capability (Tsang et al., 2005). Because of clay's swelling and shrinkage behavior (depending on whether the clay is in imbibition or drainage processes), fracture properties in the EDZ are quite dynamic and evolve over time as hydromechanical conditions change. To understand and model the coupled processes and their impact on repository performance is critical for the defensible performance assessment of a clay repository. Within the Natural Barrier System (NBS) group of the Used Fuel Disposition (UFD) Campaign at DOE's Office of Nuclear Energy, LBNL's research activities have focused on understanding and modeling such coupled processes. LBNL provided a report in this April on literature survey of studies on coupled processes in clay repositories and identification of technical issues and knowledge gaps (Tsang et al., 2010). This report will document other LBNL research activities within the natural system work package, including the development of constitutive relationships for elastic deformation of clay rock (Section 2), a THM modeling study (Section 3) and a THC modeling study (Section 4). The purpose of the THM and THC modeling studies is to demonstrate the current modeling capabilities in dealing with coupled processes in a potential clay repository. In Section 5, we discuss potential future R&D work based on the identified knowledge gaps. The linkage between these activities and related FEPs is presented in Section 6.« less

Mechanical Stability of Fractured Rift Basin Mudstones: from lab to basin scale

NASA Astrophysics Data System (ADS)

Zakharova, N. V.; Goldberg, D.; Collins, D.; Swager, L.; Payne, W. G.

2016-12-01

Understanding petrophysical and mechanical properties of caprock mudstones is essential for ensuring good containment and mechanical formation stability at potential CO2 storage sites. Natural heterogeneity and presence of fractures, however, create challenges for accurate prediction of mudstone behavior under injection conditions and at reservoir scale. In this study, we present a multi-scale geomechanical analysis for Mesozoic mudstones from the Newark Rift basin, integrating petropyshical core and borehole data, in situ stress measurements, and caprock stability modeling. The project funded by the U.S. Department of Energy's National Energy Technology Laboratory (NETL) focuses on the Newark basin as a representative locality for a series of the Mesozoic rift basins in eastern North America considered as potential CO2 storage sites. An extensive core characterization program, which included laboratory CT scans, XRD, SEM, MICP, porosity, permeability, acoustic velocity measurements, and geomechanical testing under a range of confining pressures, revealed large variability and heterogeneity in both petrophysical and mechanical properties. Estimates of unconfined compressive strength for these predominantly lacustrine mudstones range from 5,000 to 50,000 psi, with only a weak correlation to clay content. Thinly bedded intervals exhibit up to 30% strength anisotropy. Mineralized fractures, abundant in most formations, are characterized by compressive strength as low as 10% of matrix strength. Upscaling these observations from core to reservoir scale is challenging. No simple one-to-one correlation between mechanical and petrophyscial properties exists, and therefore, we develop multivariate empirical relationships among these properties. A large suite of geophysical logs, including new measurements of the in situ stress field, is used to extrapolate these relationships to a basin-scale geomechanical model and predict mudstone behavior under injection conditions.

Localization of cesium on montmorillonite surface investigated by frequency modulation atomic force microscopy

NASA Astrophysics Data System (ADS)

Araki, Yuki; Satoh, Hisao; Okumura, Masahiko; Onishi, Hiroshi

2017-11-01

Cation exchange of clay mineral is typically analyzed without microscopic study of the clay surfaces. In order to reveal the distribution of exchangeable cations at the clay surface, we performed in situ atomic-scale observations of the surface changes in Na-rich montmorillonite due to exchange with Cs cations using frequency modulation atomic force microscopy (FM-AFM). Lines of protrusion were observed on the surface in aqueous CsCl solution. The amount of Cs of the montmorillonite particles analyzed by energy dispersive X-ray spectrometry was consistent with the ratio of the number of linear protrusions to all protrusions in the FM-AFM images. The results showed that the protrusions represent adsorbed Cs cations. The images indicated that Cs cations at the surface were immobile, and their occupancy remained constant at 10% of the cation sites at the surface with different immersion times in the CsCl solution. This suggests that the mobility and the number of Cs cations at the surface are controlled by the permanent charge of montmorillonite; however, the Cs distribution at the surface is independent of the charge distribution of the inner silicate layer. Our atomic-scale observations demonstrate that surface cations are distributed in different ways in montmorillonite and mica.

[Effects of Long-term Implementation of the Flow-Sediment Regulation Scheme on Grain and Clay Compositions of Inshore Sediments in the Yellow River Estuary].

PubMed

Wang, Miao-miao; Sun, Zhi-gao; Lu, Xiao-ning; Wang, Wei; Wang, Chuan-yuan

2015-04-01

Based on the laser particle size and X-ray diffraction (XRD) analysis, 28 sediment samples collected from the inshore region of the Yellow River estuary in October 2013 were determined to discuss the influence of long-term implementation of the flow-sediment regulation scheme (FSRS, initiated in 2002) on the distributions of grain size and clay components (smectite, illite, kaolinite and chlorite) in sediments. Results showed that, after the FSRS was implemented for more than 10 years, although the proportion of sand in inshore sediments of the Yellow River estuary was higher (average value, 23.5%) than those in sediments of the Bohai Sea and the Yellow River, silt was predominated (average value, 59.1%) and clay components were relatively low (average value, 17.4%). The clay components in sediments of the inshore region in the Yellow River estuary were close with those in the Yellow River. The situation was greatly changed due to the implementation of FSRS since 2002, and the clay components were in the order of illite > smectite > chlorite > kaolinite. This study also indicated that, compared to large-scale investigation in Bohai Sea, the local study on the inshore region of the Yellow River estuary was more favorable for revealing the effects of long-term implementation of the FSRS on sedimentation environment of the Yellow River estuary.

Frequency Effects on ESL Compositional Multi-Word Sequence Processing

ERIC Educational Resources Information Center

Supasiraprapa, Sarut

2017-01-01

The current study investigated whether adult native English speakers and English-as-a-second-language (ESL) learners exhibit sensitivity to compositional English multi-word sequences, which have a meaning derivable from word parts (e.g., don't have to worry as opposed to sequences like He left the US for good, where for good cannot be taken apart…

BioVLAB-mCpG-SNP-EXPRESS: A system for multi-level and multi-perspective analysis and exploration of DNA methylation, sequence variation (SNPs), and gene expression from multi-omics data.

PubMed

Chae, Heejoon; Lee, Sangseon; Seo, Seokjun; Jung, Daekyoung; Chang, Hyeonsook; Nephew, Kenneth P; Kim, Sun

2016-12-01

Measuring gene expression, DNA sequence variation, and DNA methylation status is routinely done using high throughput sequencing technologies. To analyze such multi-omics data and explore relationships, reliable bioinformatics systems are much needed. Existing systems are either for exploring curated data or for processing omics data in the form of a library such as R. Thus scientists have much difficulty in investigating relationships among gene expression, DNA sequence variation, and DNA methylation using multi-omics data. In this study, we report a system called BioVLAB-mCpG-SNP-EXPRESS for the integrated analysis of DNA methylation, sequence variation (SNPs), and gene expression for distinguishing cellular phenotypes at the pairwise and multiple phenotype levels. The system can be deployed on either the Amazon cloud or a publicly available high-performance computing node, and the data analysis and exploration of the analysis result can be conveniently done using a web-based interface. In order to alleviate analysis complexity, all the process are fully automated, and graphical workflow system is integrated to represent real-time analysis progression. The BioVLAB-mCpG-SNP-EXPRESS system works in three stages. First, it processes and analyzes multi-omics data as input in the form of the raw data, i.e., FastQ files. Second, various integrated analyses such as methylation vs. gene expression and mutation vs. methylation are performed. Finally, the analysis result can be explored in a number of ways through a web interface for the multi-level, multi-perspective exploration. Multi-level interpretation can be done by either gene, gene set, pathway or network level and multi-perspective exploration can be explored from either gene expression, DNA methylation, sequence variation, or their relationship perspective. The utility of the system is demonstrated by performing analysis of phenotypically distinct 30 breast cancer cell line data set. BioVLAB-mCpG-SNP-EXPRESS is available at http://biohealth.snu.ac.kr/software/biovlab_mcpg_snp_express/. Copyright © 2016 Elsevier Inc. All rights reserved.

Surveying Clay Mineral Diversity in the Murray Formation, Gale Crater, Mars

NASA Technical Reports Server (NTRS)

Bristow, T.F.; Blake, D. F..; Vaniman, D. T.; Chipera, S. J.; Rampe, E. B.; Grotzinger, J. P.; McAdam, A. C.; Ming, D. W..; Morrison, S. M.; Yen, A. S.;

NMR Methods, Applications and Trends for Groundwater Evaluation and Management

NASA Astrophysics Data System (ADS)

Walsh, D. O.; Grunewald, E. D.

2011-12-01

Nuclear magnetic resonance (NMR) measurements have a tremendous potential for improving groundwater characterization, as they provide direct detection and measurement of groundwater and unique information about pore-scale properties. NMR measurements, commonly used in chemistry and medicine, are utilized in geophysical investigations through non-invasive surface NMR (SNMR) or downhole NMR logging measurements. Our recent and ongoing research has focused on improving the performance and interpretation of NMR field measurements for groundwater characterization. Engineering advancements have addressed several key technical challenges associated with SNMR measurements. Susceptibility of SNMR measurements to environmental noise has been dramatically reduced through the development of multi-channel acquisition hardware and noise-cancellation software. Multi-channel instrumentation (up to 12 channels) has also enabled more efficient 2D and 3D imaging. Previous limitations in measuring NMR signals from water in silt, clay and magnetic geology have been addressed by shortening the instrument dead-time from 40 ms to 4 ms, and increasing the power output. Improved pulse sequences have been developed to more accurately estimate NMR relaxation times and their distributions, which are sensitive to pore size distributions. Cumulatively, these advancements have vastly expanded the range of environments in which SNMR measurements can be obtained, enabling detection of groundwater in smaller pores, in magnetic geology, in the unsaturated zone, and nearby to infrastructure (presented here in case studies). NMR logging can provide high-resolution estimates of bound and mobile water content and pore size distributions. While NMR logging has been utilized in oil and gas applications for decades, its use in groundwater investigations has been limited by the large size and high cost of oilfield NMR logging tools and services. Recently, engineering efforts funded by the US Department of Energy have produced an NMR logging tool that is much smaller and less costly than comparable oilfield NMR logging tools. This system is specifically designed for near surface groundwater investigations, incorporates small diameter probes (as small as 1.67 inches diameter) and man-portable surface stations, and provides NMR data and information content on par with oilfield NMR logging tools. A direct-push variant of this logging tool has also been developed. Key challenges associated with small diameter tools include inherently lower SNR and logging speeds, the desire to extend the sensitive zone as far as possible into unconsolidated formations, and simultaneously maintaining high power and signal fidelity. Our ongoing research in groundwater NMR aims to integrating surface and borehole measurements for regional-scale permeability mapping, and to develop in-place NMR sensors for long term monitoring of contaminant and remediation processes. In addition to groundwater resource characterization, promising new applications of NMR include assessing water content in ice and permafrost, management of groundwater in mining operations, and evaluation and management of groundwater in civil engineering applications.

Estimating of Soil Texture Using Landsat Imagery: a Case Study in Thatta Tehsil, Sindh

NASA Astrophysics Data System (ADS)

Khalil, Zahid

2016-07-01

Soil texture is considered as an important environment factor for agricultural growth. It is the most essential part for soil classification in large scale. Today the precise soil information in large scale is of great demand from various stakeholders including soil scientists, environmental managers, land use planners and traditional agricultural users. With the increasing demand of soil properties in fine scale spatial resolution made the traditional laboratory methods inadequate. In addition the costs of soil analysis with precision agriculture systems are more expensive than traditional methods. In this regard, the application of geo-spatial techniques can be used as an alternative for examining soil analysis. This study aims to examine the ability of Geo-spatial techniques in identifying the spatial patterns of soil attributes in fine scale. Around 28 samples of soil were collected from the different areas of Thatta Tehsil, Sindh, Pakistan for analyzing soil texture. An Ordinary Least Square (OLS) regression analysis was used to relate the reflectance values of Landsat8 OLI imagery with the soil variables. The analysis showed there was a significant relationship (p<0.05) of band 2 and 5 with silt% (R2 = 0.52), and band 4 and 6 with clay% (R2 =0.40). The equation derived from OLS analysis was then used for the whole study area for deriving soil attributes. The USDA textural classification triangle was implementing for the derivation of soil texture map in GIS environment. The outcome revealed that the 'sandy loam' was in great quantity followed by loam, sandy clay loam and clay loam. The outcome shows that the Geo-spatial techniques could be used efficiently for mapping soil texture of a larger area in fine scale. This technology helped in decreasing cost, time and increase detailed information by reducing field work to a considerable level.

Sedimentation in a Submarine Seamount Apron at Site U1431, International Ocean Discovery Program Expedition 349, South China Sea

NASA Astrophysics Data System (ADS)

Dadd, K. A.; Clift, P. D.; Hyun, S.; Jiang, T.; Liu, Z.

2014-12-01

International Ocean Discovery Program (IODP) Expedition 349 Site U1431 is located near the relict spreading ridge in the East Subbasin of the South China Sea. Holes at this site were drilled close to seamounts and intersected the volcaniclastic apron. Volcaniclastic breccia and sandstone at Site U1431 are dated as late middle Miocene to early late Miocene (~8-13 Ma), suggesting a 5 m.y. duration of seamount volcanism. The apron is approximately 200 m thick and is sandwiched between non-volcaniclastic units that represent the background sedimentation. These comprise dark greenish gray clay, silt, and nannofossil ooze interpreted as turbidite and hemipelagic deposits that accumulated at abyssal water depths. At its base, the seamount sequence begins with dark greenish gray sandstone, siltstone, and claystone in upward fining sequences interpreted as turbidites intercalated with minor intervals of volcaniclastic breccia. Upsection the number and thickness of breccia layers increases with some beds up to 4.8 m and possibly 14.5 m thick. The breccia is typically massive, ungraded, and poorly sorted with angular to subangular basaltic clasts, as well as minor reworked subrounded calcareous mudstone, mudstone, and sandstone clasts. Basaltic clasts include nonvesicular aphyric basalt, sparsely vesicular aphyric basalt, highly vesicular aphyric basalt, and nonvesicular glassy basalt. Mudstone clasts are clay rich and contain foraminifer fossils. The matrix comprises up to 40% of the breccia beds and is a mix of clay, finer grained altered basalt clasts, and mafic vitroclasts with rare foraminifer fossils. Some layers have calcite cement between clasts. Volcaniclastic sandstone and claystone cycles interbedded with the breccia layers have current ripples and parallel laminations indicative of high-energy flow conditions during sedimentation. The breccia beds were most likely deposited as a series of debris flows or grain flows. This interpretation is supported by their massive structure, poor sorting, and reverse-graded bases. The upper part of the apron grades back into the background clay, silt and nannofossil ooze sedimentation with minor volcaniclastic sand and silt.

February 2011 sensitive clay landslides at the Çöllolar coalfield, eastern Turkey

NASA Astrophysics Data System (ADS)

Akçar, Naki; Yavuz, Vural; Ivy-Ochs, Susan; Nyffenegger, Franziska; Fredin, Ola; Stolz, Martin; Schlunegger, Fritz

2016-04-01

The Elbistan basin is an intramontane basin, which is located in the eastern Turkey and bound by the Taurus and Antitaurus Mountains. The basin covers an area of 900 km² at a mean elevation of about 1200 m. The basement rock in this field is karstic limestone, which is overlain by a thick layer of clay (>100 m), followed by 20-50 m thick Lignite series that is overlain by the 20-50 m thick Gyttja sequence. These deposits are overlain by Quaternary deposits, comprising the top surfaces of the terraces of the Hurman River, which drains the surface and ground water from the surrounding hills to the northeast towards the center of the Elbistan basin. The Çöllolar open pit mine, situated in the northwestern sector of the Elbistan basin, contains 90 km2 of mineable coal which has been excavated since 2008. In February 2011, two landslides in which 10 workers were killed, occurred in this field. Of the two landslides, the 2nd and largest which covers an area of ca. 2.3 km2,was caused by the collapse of the northeastern wall of the open-pit mine. The failure was made of successive rearward collapses with the debris flowing into the open-pit. In this study, we focus on the geologic factors that led to instability and the trigger of the landslides. To reveal these factors, we employ sedimentological and geotechnical analysis of deposits, with a special emphasis on the Pliocene lacustrine carbonaceous sediments and the sensitivity of the overlying Quaternary clays. First results from the fieldwork and the mineralogical composition and physical properties of the collected samples indicate that the landslide was caused by the liquefaction of one of the layers within the thick sequence of this part of the Elbistan basin based on the flow style of the movement and nature of the failure. In brief, we conclude that massive failures at the Çöllolar coalfield are unique examples of sensitive clay landslides occurred in a subtropical arid region beyond the extent of Quaternary glaciations.

Chemical models for martian weathering profiles: Insights into formation of layered phyllosilicate and sulfate deposits

NASA Astrophysics Data System (ADS)

Zolotov, Mikhail Yu.; Mironenko, Mikhail V.

2016-09-01

Numerical chemical models for water-basalt interaction have been used to constrain the formation of stratified mineralogical sequences of Noachian clay-bearing rocks exposed in the Mawrth Vallis region and in other places on cratered martian highlands. The numerical approaches are based on calculations of water-rock type chemical equilibria and models which include rates of mineral dissolution. Results show that the observed clay-bearing sequences could have formed through downward percolation and neutralization of acidic H2SO4-HCl solutions. A formation of weathering profiles by slightly acidic fluids equilibrated with current atmospheric CO2 requires large volumes of water and is inconsistent with observations. Weathering by solutions equilibrated with putative dense CO2 atmospheres leads to consumption of CO2 to abundant carbonates which are not observed in clay stratigraphies. Weathering by H2SO4-HCl solutions leads to formation of amorphous silica, Al-rich clays, ferric oxides/oxyhydroxides, and minor titanium oxide and alunite at the top of weathering profiles. Mg-Fe phyllosilicates, Ca sulfates, zeolites, and minor carbonates precipitate from neutral and alkaline solutions at depth. Acidic weathering causes leaching of Na, Mg, and Ca from upper layers and accumulation of Mg-Na-Ca sulfate-chloride solutions at depth. Neutral MgSO4 type solutions dominate in middle parts of weathering profiles and could occur in deeper layers owing to incomplete alteration of Ca minerals and a limited trapping of Ca to sulfates. Although salts are not abundant in the Noachian geological formations, the results suggest the formation of Noachian salty solutions and their accumulation at depth. A partial freezing and migration of alteration solutions could have separated sulfate-rich compositions from low-temperature chloride brines and contributed to the observed diversity of salt deposits. A Hesperian remobilization and release of subsurface MgSO4 type solutions into newly-formed depressions could account for formation of some massive layered sulfate deposits through freezing or evaporation. This scenario explains the observed deficiency of salts in Noachian formations, a paucity of Hesperian phyllosilicates, and the occurrence of sulfate deposits in Valles Marineris troughs, chaotic terrains, and some craters of the Hesperian age.

Silicon Isotopic Fractionation in a Tropical Soil-Plant System

NASA Astrophysics Data System (ADS)

Opfergelt, S.; Delstanche, S.; Cardinal, D.; Andre, L.; Delvaux, B.

2006-12-01

Silica fluxes to soil solutions and water streams are controlled by both abiotic and biotic processes occurring in a Si soil-plant cycle that can be significant in comparison with Si weathering input and hydrological output. The quantification of Si-isotopic fractionation by these processes is highly promising to study the Si soil-plant cycle. Therein, the fate of aqueous monosilicic acid H4SiO4, as produced by silicate weathering, may take four paths: (1) uptake by plants and recycling through falling litter, (2) formation of clay minerals, (3) specific adsorption onto Al and Fe oxides, (4) leaching in drainage waters and export from watersheds. Here we report on detailed Si-isotopic compositions of various Si pools in a tropical soil-plant system involving old stands of banana (Musa acuminata Colla, cv Grande Naine) cropped on a weathering sequence of soils derived from andesitic volcanic ash and pumice deposits in Cameroon, West Africa. Si-isotopic compositions were measured by MC-ICP-MS in dry plasma mode with external Mg doping with a reproducibility of 0.08 permil (2stdev). Results were expressed as delta29Si vs NBS28. The compositions were determined in plant parts, bulk soils, clay fractions (less than 2um) and stream waters used for crop irrigation. Of the weathering sequence, we selected young (Y) and old (O) volcanic soils (vs). Yvs are rich in weatherable minerals, and contain large amounts of pumice gravels; their clay fraction (10-35 percent) contains allophane, halloysite and ferrihydrite. Oppositely, Ovs are strongly weathered and fine clayey soils (75-96 percent clay) rich in halloysite, kaolinite, gibbsite and goethite. Intra-plant fractionation between roots and shoots and within shoots confirmed our previous data measured on banana plants grown in hydroponics. The bulk plant isotopic composition was heavier at Ovs than at Yvs giving a fractionation factor per atomic mass unit between plants and their irrigation water Si source (+0.61 permil) of -0.33 (Ovs) and -0.56 permil (Yvs), close to the fractionation factor previously measured in hydroponics (-0.40 permil). The average delta29Si of phytoliths in banana plants was +0.17 permil. In the topsoil, the isotopic composition of Yvs ( 0.21 permil) was close to that of unweathered pumice (-0.20 permil). The Ovs were significantly lighter (-0.73 permil), confirming published data pointing to lighter isotopic composition with increased weathering. Heavier bulk plants at Ovs might be related to a heavier residual soil solution due to: (i) the formation of lighter clay minerals at Ovs (clay fraction: -0.94 permil) than at Yvs (-0.60 permil), and (ii) the quantitative adsorption of silica onto iron oxides (see Delstanche et al., 2006, AGU), more abundant in weathered Ovs. Our data support the view that plants can induce a strong imprint on the continental cycle of silicon, just as clay formation and possibly Si adsorption onto iron oxides can do. The quantification of Si-isotopic fractionation in the soil-plant system requires, however, further studies involving all the Si pools to achieve a comprehensive understanding of this cycle.

Paleoenvironmental conditions in the late Paleogene, Sumatra, Indonesia

NASA Astrophysics Data System (ADS)

O'shea, Natalie; Arthur Bettis, E.; Zaim, Yahdi; Rizal, Yan; Aswan, Aswan; Gunnell, Gregg F.; Zonneveld, John-Paul; Ciochon, Russell L.

2015-11-01

A stratified paleosol sequence exposed in an open pit mine in central Sumatra provides a record of the paleoenvironmental conditions in the lower reaches of a large river system in the late Paleogene (latest Eocene or Oligocene). Morphological, geochemical, and stable isotope data suggest that the sequence represents a mosaic of local environmental conditions changing from estuarine to riverine up section. Weakly expressed soils formed on low-lying estuary surfaces, while more well expressed soils formed on higher, better drained surfaces. Peatlands (coal) with clayey subsoils were along the estuary margins. Well-expressed soils with evidence of clay translocation and chemical weathering become more common higher in the section where alluvial deposits associated with a meandering river are dominant. Stable carbon isotope ratios support a paleolandscape dominated by C3 plants with input by C4 vegetation limited to a few intervals. Finally, whole-rock geochemistry suggests moderate chemical weathering consistent with a tropical locality. This multi-proxy paleoenvironmental reconstruction suggests a highly productive lowland forest environment at this locality in the late Paleogene and provides the first direct examination of the terrestrial environment in Sumatra at this time. The limited fossil record in Island Southeast Asia during this time period is likely a result of poor bone and shell preservation in tropical forest environments combined with a general lack of systematic prospecting. However, our continuing work in this area has produced a relatively diverse assemblage of fossil vertebrates, now including fishes, amphibians, turtles, crocodiles, and mammals, as well as a growing diversity of fossil plants.

Integrating multi-omic features exploiting Chromosome Conformation Capture data.

PubMed

Merelli, Ivan; Tordini, Fabio; Drocco, Maurizio; Aldinucci, Marco; Liò, Pietro; Milanesi, Luciano

2015-01-01

The representation, integration, and interpretation of omic data is a complex task, in particular considering the huge amount of information that is daily produced in molecular biology laboratories all around the world. The reason is that sequencing data regarding expression profiles, methylation patterns, and chromatin domains is difficult to harmonize in a systems biology view, since genome browsers only allow coordinate-based representations, discarding functional clusters created by the spatial conformation of the DNA in the nucleus. In this context, recent progresses in high throughput molecular biology techniques and bioinformatics have provided insights into chromatin interactions on a larger scale and offer a formidable support for the interpretation of multi-omic data. In particular, a novel sequencing technique called Chromosome Conformation Capture allows the analysis of the chromosome organization in the cell's natural state. While performed genome wide, this technique is usually called Hi-C. Inspired by service applications such as Google Maps, we developed NuChart, an R package that integrates Hi-C data to describe the chromosomal neighborhood starting from the information about gene positions, with the possibility of mapping on the achieved graphs genomic features such as methylation patterns and histone modifications, along with expression profiles. In this paper we show the importance of the NuChart application for the integration of multi-omic data in a systems biology fashion, with particular interest in cytogenetic applications of these techniques. Moreover, we demonstrate how the integration of multi-omic data can provide useful information in understanding why genes are in certain specific positions inside the nucleus and how epigenetic patterns correlate with their expression.

RCSLenS: The Red Cluster Sequence Lensing Survey

NASA Astrophysics Data System (ADS)

Hildebrandt, H.; Choi, A.; Heymans, C.; Blake, C.; Erben, T.; Miller, L.; Nakajima, R.; van Waerbeke, L.; Viola, M.; Buddendiek, A.; Harnois-Déraps, J.; Hojjati, A.; Joachimi, B.; Joudaki, S.; Kitching, T. D.; Wolf, C.; Gwyn, S.; Johnson, N.; Kuijken, K.; Sheikhbahaee, Z.; Tudorica, A.; Yee, H. K. C.

2016-11-01

We present the Red Cluster Sequence Lensing Survey (RCSLenS), an application of the methods developed for the Canada-France-Hawaii Telescope Lensing Survey (CFHTLenS) to the ˜785 deg2, multi-band imaging data of the Red-sequence Cluster Survey 2. This project represents the largest public, sub-arcsecond seeing, multi-band survey to date that is suited for weak gravitational lensing measurements. With a careful assessment of systematic errors in shape measurements and photometric redshifts, we extend the use of this data set to allow cross-correlation analyses between weak lensing observables and other data sets. We describe the imaging data, the data reduction, masking, multi-colour photometry, photometric redshifts, shape measurements, tests for systematic errors, and a blinding scheme to allow for more objective measurements. In total, we analyse 761 pointings with r-band coverage, which constitutes our lensing sample. Residual large-scale B-mode systematics prevent the use of this shear catalogue for cosmic shear science. The effective number density of lensing sources over an unmasked area of 571.7 deg2 and down to a magnitude limit of r ˜ 24.5 is 8.1 galaxies per arcmin2 (weighted: 5.5 arcmin-2) distributed over 14 patches on the sky. Photometric redshifts based on four-band griz data are available for 513 pointings covering an unmasked area of 383.5 deg2. We present weak lensing mass reconstructions of some example clusters as well as the full survey representing the largest areas that have been mapped in this way. All our data products are publicly available through Canadian Astronomy Data Centre at http://www.cadc-ccda.hia-iha.nrc-cnrc.gc.ca/en/community/rcslens/query.html in a format very similar to the CFHTLenS data release.

CloVR: a virtual machine for automated and portable sequence analysis from the desktop using cloud computing.

PubMed

Angiuoli, Samuel V; Matalka, Malcolm; Gussman, Aaron; Galens, Kevin; Vangala, Mahesh; Riley, David R; Arze, Cesar; White, James R; White, Owen; Fricke, W Florian

2011-08-30

Next-generation sequencing technologies have decentralized sequence acquisition, increasing the demand for new bioinformatics tools that are easy to use, portable across multiple platforms, and scalable for high-throughput applications. Cloud computing platforms provide on-demand access to computing infrastructure over the Internet and can be used in combination with custom built virtual machines to distribute pre-packaged with pre-configured software. We describe the Cloud Virtual Resource, CloVR, a new desktop application for push-button automated sequence analysis that can utilize cloud computing resources. CloVR is implemented as a single portable virtual machine (VM) that provides several automated analysis pipelines for microbial genomics, including 16S, whole genome and metagenome sequence analysis. The CloVR VM runs on a personal computer, utilizes local computer resources and requires minimal installation, addressing key challenges in deploying bioinformatics workflows. In addition CloVR supports use of remote cloud computing resources to improve performance for large-scale sequence processing. In a case study, we demonstrate the use of CloVR to automatically process next-generation sequencing data on multiple cloud computing platforms. The CloVR VM and associated architecture lowers the barrier of entry for utilizing complex analysis protocols on both local single- and multi-core computers and cloud systems for high throughput data processing.

The genome sequence of the outbreeding globe artichoke constructed de novo incorporating a phase-aware low-pass sequencing strategy of F1 progeny

PubMed Central

Scaglione, Davide; Reyes-Chin-Wo, Sebastian; Acquadro, Alberto; Froenicke, Lutz; Portis, Ezio; Beitel, Christopher; Tirone, Matteo; Mauro, Rosario; Lo Monaco, Antonino; Mauromicale, Giovanni; Faccioli, Primetta; Cattivelli, Luigi; Rieseberg, Loren; Michelmore, Richard; Lanteri, Sergio

2016-01-01

Globe artichoke (Cynara cardunculus var. scolymus) is an out-crossing, perennial, multi-use crop species that is grown worldwide and belongs to the Compositae, one of the most successful Angiosperm families. We describe the first genome sequence of globe artichoke. The assembly, comprising of 13,588 scaffolds covering 725 of the 1,084 Mb genome, was generated using ~133-fold Illumina sequencing data and encodes 26,889 predicted genes. Re-sequencing (30×) of globe artichoke and cultivated cardoon (C. cardunculus var. altilis) parental genotypes and low-coverage (0.5 to 1×) genotyping-by-sequencing of 163 F1 individuals resulted in 73% of the assembled genome being anchored in 2,178 genetic bins ordered along 17 chromosomal pseudomolecules. This was achieved using a novel pipeline, SOILoCo (Scaffold Ordering by Imputation with Low Coverage), to detect heterozygous regions and assign parental haplotypes with low sequencing read depth and of unknown phase. SOILoCo provides a powerful tool for de novo genome analysis of outcrossing species. Our data will enable genome-scale analyses of evolutionary processes among crops, weeds, and wild species within and beyond the Compositae, and will facilitate the identification of economically important genes from related species. PMID:26786968

Morphology of the pore space in claystones - evidence from BIB/FIB ion beam sectioning and cryo-SEM observations

NASA Astrophysics Data System (ADS)

Desbois, G.; Urai, J. L.; Kukla, P. A.

2009-12-01

Mudrocks and clay-rich fault gouges are important mechanical elements in the Earth’s crust and form seals for crustal fluids such as groundwater and hydrocarbons. Other fields of interest are the storage of anthropogenic carbon dioxide and radioactive waste in geologic formations. In addition, coupled flows, capillary processes, and associated deformation are of importance in many applied fields. A key factor to understanding these processes is a detailed understanding of the morphology of the pore space. Classic studies of porosity in fine grained materials are performed on dried or freeze dried samples and include metal injection methods, magnetic susceptibility measurement, SEM and TEM imaging, neutron scattering, NMR spectroscopy, and ESEM. Confocal microscopy and X-ray tomography are used to image porosity in coarse grained sediments but the resolution of these techniques is not sufficient at present for applications to mudrocks or clay-rich fault gouges. Therefore, observations and interpretations remain difficult because none of these approaches is able to directly describe the in-situ porosity at the pore scale. In addition, some methods require dried samples in which the natural structure of pores may have been damaged to some extent due to desiccation and dehydration of the clay minerals. A recently developed alternative is to study wet samples using a cryo-SEM, which allows stabilization of wet media at cryo-temperature, in-situ sample preparation by ion beam cross-sectioning (BIB, FIB) and observations of the stabilized microstructure at high resolution. We report on a study of Boom clay from a proposed disposal site of radioactive waste (Mol site, Belgium) using cryo-SEM at cryogenic temperature, with ion beam cross-sectioning to prepare smooth, damage free surfaces. Pores commonly have crack-like tips, preferred orientation parallel to bedding and power law size distribution. We define a number of pore types depending on shape and location in the microstructure. 3-D reconstruction by serial cross-sectioning shows 3-D connectivity of the pore space. These findings offer a new insight into the morphology of pores down to nano-scale and provide the basis for microstructure-based models of transport in clays. SEM image (SE) of a Broad Ion Beam polished cross-section performed on dry Boom clay (Mol site, Belgium) showing the 2D apparent porosity (26.3%). The cross-section is perpendicular to the bedding.

A Visual Basic program to classify sediments based on gravel-sand-silt-clay ratios

USGS Publications Warehouse

Poppe, L.J.; Eliason, A.H.; Hastings, M.E.

2003-01-01

Nomenclature describing size distributions is important to geologists because grain size is the most basic attribute of sediments. Traditionally, geologists have divided sediments into four size fractions that include gravel, sand, silt, and clay, and classified these sediments based on ratios of the various proportions of the fractions. Definitions of these fractions have long been standardized to the grade scale described by Wentworth (1922), and two main classification schemes have been adopted to describe the approximate relationship between the size fractions.Specifically, according to the Wentworth grade scale gravel-sized particles have a nominal diameter of ⩾2.0 mm; sand-sized particles have nominal diameters from <2.0 mm to ⩾62.5 μm; silt-sized particles have nominal diameters from <62.5 to ⩾4.0 μm; and clay is <4.0 μm. As for sediment classification, most sedimentologists use one of the systems described either by Shepard (1954) or Folk (1954, 1974). The original scheme devised by Shepard (1954) utilized a single ternary diagram with sand, silt, and clay in the corners to graphically show the relative proportions among these three grades within a sample. This scheme, however, does not allow for sediments with significant amounts of gravel. Therefore, Shepard's classification scheme (Fig. 1) was subsequently modified by the addition of a second ternary diagram to account for the gravel fraction (Schlee, 1973). The system devised by Folk (1954, 1974) is also based on two triangular diagrams (Fig. 2), but it has 23 major categories, and uses the term mud (defined as silt plus clay). The patterns within the triangles of both systems differ, as does the emphasis placed on gravel. For example, in the system described by Shepard, gravelly sediments have more than 10% gravel; in Folk's system, slightly gravelly sediments have as little as 0.01% gravel. Folk's classification scheme stresses gravel because its concentration is a function of the highest current velocity at the time of deposition, together with the maximum grain size of the detritus that is available; Shepard's classification scheme emphasizes the ratios of sand, silt, and clay because they reflect sorting and reworking (Poppe et al., 2000).

Studying methane migration mechanisms at Walker Ridge, Gulf of Mexico, via 3D methane hydrate reservoir modeling

DOE Office of Scientific and Technical Information (OSTI.GOV)

Nole, Michael; Daigle, Hugh; Mohanty, Kishore

We have developed a 3D methane hydrate reservoir simulator to model marine methane hydrate systems. Our simulator couples highly nonlinear heat and mass transport equations and includes heterogeneous sedimentation, in-situ microbial methanogenesis, the influence of pore size contrast on solubility gradients, and the impact of salt exclusion from the hydrate phase on dissolved methane equilibrium in pore water. Using environmental parameters from Walker Ridge in the Gulf of Mexico, we first simulate hydrate formation in and around a thin, dipping, planar sand stratum surrounded by clay lithology as it is buried to 295mbsf. We find that with sufficient methane beingmore » supplied by organic methanogenesis in the clays, a 200x pore size contrast between clays and sands allows for a strong enough concentration gradient to significantly drop the concentration of methane hydrate in clays immediately surrounding a thin sand layer, a phenomenon that is observed in well log data. Building upon previous work, our simulations account for the increase in sand-clay solubility contrast with depth from about 1.6% near the top of the sediment column to 8.6% at depth, which leads to a progressive strengthening of the diffusive flux of methane with time. By including an exponentially decaying organic methanogenesis input to the clay lithology with depth, we see a decrease in the aqueous methane supplied to the clays surrounding the sand layer with time, which works to further enhance the contrast in hydrate saturation between the sand and surrounding clays. Significant diffusive methane transport is observed in a clay interval of about 11m above the sand layer and about 4m below it, which matches well log observations. The clay-sand pore size contrast alone is not enough to completely eliminate hydrate (as observed in logs), because the diffusive flux of aqueous methane due to a contrast in pore size occurs slower than the rate at which methane is supplied via organic methanogenesis. Therefore, it is likely that additional mechanisms are at play, notably bound water activity reduction in clays. Three-dimensionality allows for inclusion of lithologic heterogeneities, which focus fluid flow and subsequently allow for heterogeneity in the methane migration mechanisms that dominate in marine sediments at a local scale. Incorporating recently acquired 3D seismic data from Walker Ridge to inform the lithologic structure of our modeled reservoir, we show that even with deep adjective sourcing of methane along highly permeable pathways, local hydrate accumulations can be sourced either by diffusive or advective methane flux; advectively-sourced hydrates accumulate evenly in highly permeable strata, while diffusively-sourced hydrates are characterized by thin strata-bound intervals with high clay-sand pore size contrasts.« less

Titanium mineral resources of the western U.S.: an update

USGS Publications Warehouse

Force, Eric R.; Creely, Scott

2000-01-01

Thirteen deposits or districts in the western U.S. have been examined in which titaniummineral resources have been reported or implied. These deposits are of the following general types (in probable order of importance): 1) Cretaceous shoreline placer deposits, 2) silica-sand deposits of California, 3) fluvial monazite placers of Idaho, 4) anorthositerelated deposits, and 5) clay and bauxite deposits of the northwestern U.S. Relative to previous reports, this one shows some greater and some lesser resources (table 1). In any case, titanium-mineral resources of the western U.S. (west of 103° longitude) remain modest at world scale except as unconventional (especially perovskite) and by-product (especially porphyry) resources. Some deposits, however, have enhanced value to the titanium explorationist for the geologic relations they illustrate. Among the new conclusions are: a) Loci of Cretaceous shoreline placers form linear patterns, nested as a function of age, that can be traced for thousands of kilometers, permitting focused exploration in whole new mountain ranges. b) Medial hematite-ilmenite solid-solution, which is highly magnetic, is a major carrier of TiO2 values in the Cretaceous deposits of Wyoming. This phase was previously thought to be relatively rare. c) Regressive shoreline placer deposits in indurated Cretaceous sequences expose intricate facies relations, such as the construction of shoreface sequences by long-shore drift over tidal-channel fill, without much loss of paleogeographic information. d) Due to deep weathering, virtually every Eocene sediment that accumulated in the Ione basin at the foot of the Sierra Nevada has economic value, permitting recovery of altered ilmenite and zircon along with silica, clay, coal, and gold. Ilmenite is most abundant in newly recognized shoreline sands. e) Upper Tertiary fluvial placers of Idaho formed in and filled fault-bounded basins and thus are far more voluminous than deposits in the modern valley system. Previously reported resources are thus far too low. f) Mafic igneous rocks of Proterozoic age near Bagdad, Arizona are of ophiolitic affinity, but contain nelsonitic ilmenite enrichments associated with anorthositic layers.

Clay mineral assemblages of terrestrial records (Xining Basin, China) during the Eocene-Oligocene climate Transition (EOT) and its environmental implications

NASA Astrophysics Data System (ADS)

Zhang, C.; Guo, Z.

2013-12-01

The Eocene-Oligocene Transition (EOT) between ~34.0 and 33.5 million years ago, where global climate cooled from 'greenhouse' to 'icehouse' at ~33.5 Ma ago, is one of the great events during Cenozoic climate deterioration. In contrast to the marine records of the EOT, significantly less research has focused on the continental climate change during this time, particularly in inner Asia. We present a comprehensive study of the upper Eocene to lower Oligocene succession with regular alternations of laterally continuous gypsum/gypsiferous layers and red mudstone beds in Tashan section of Xining Basin, which is located at the northeastern margin of the Tibetan Plateau. Clay minerals, which were extracted from this succession, were analyzed qualitatively and semi-quantitatively by using X-ray differaction (XRD). Base on detailed magnetostratigraphic time control, clay mineral compositions of this succession (33.1-35.5 Ma) are compared with open ocean marine records and Northern Hemisphere continental records to understand the process and characteristics of Asian climate change before, during and after EOT. Our results indicate that illite is the dominant clay mineral with less chlorite and variable smectite. Multi-parameter evidence suggests that the source areas of detrital inputs in Tashan have not changed and climate is the main control for the composition of the clay fraction. The characteristics of clay mineral concentrations suggest warm and humid fluctuations with cold and dry conditions and intense of seasonality during ~35.5-34.0 Ma in inner Asian. This changed to cold and dry condition at ~34 Ma and remained so from ~34-33.1 Ma. The comparisons between continental and marine records indicate that the climate changes experienced in the Xining basin region are more consistent with Northern Hemisphere rather than open oceans records. This indicates that paleoclimate changes for inner Asian before, during and after EOT was not controlled by Antarctic ice growth, but may be due to atmospheric cooling linked to the existence and expansion of Northern Hemisphere glaciation.

Development of New Elastomers and Elastic Nanocomposites from Plant Oils

NASA Astrophysics Data System (ADS)

Zhu, Lin; Wool, Richard

2006-03-01

Economic and environmental concerns lead to the development of new polymers from renewable resources. In this research, new elastomers were synthesized from plant oil based resins. Acrylated oleic methyl ester (AOME), synthesized from high oleic triglycerides, can readily undergo free radical polymerization and form a linear polymer. To achieve the elastic properties, different strategies have been developed to generate an elastic network and control the crosslink density. The elastomers are reinforced by nanoclays. The intercalated state has a network structure similar to thermoplastic elastomers in which the hard segments aggregate to give ordered crystalline domains. The selected organically modified clay and AOME matrix have similar solubility parameters, therefore intercalation of the monomer/polymer into the clay layers occurs and the nano-scale multilayered structure is stable. In situ intercalation and solution intercalation were used to prepare the elastic nanocomposites. Dramatic improvement in mechanical properties was observed. Changes of tensile strength, strain, Young's modulus and fracture energy were related to the clay concentration. The fracture surface was studied to further understand clay effects on the mechanical properties. Self-Healing of the intercalated nanobeams, thermal stability, biocompatibility and biodegradability of this new elastomer were also explored.

Paleogene Seawater Osmium Isotope Records

NASA Astrophysics Data System (ADS)

Rolewicz, Z.; Thomas, D. J.; Marcantonio, F.

2012-12-01

Paleoceanographic reconstructions of the Late Cretaceous and early Cenozoic require enhanced geographic coverage, particularly in the Pacific, in order to better constrain meridional variations in environmental conditions. The challenge with the existing inventory of Pacific deep-sea cores is that they consist almost exclusively of pelagic clay with little existing age control. Pelagic clay sequences are useful for reconstructions of dust accumulation and water mass composition, but accurate correlation of these records to other sites requires improved age control. Recent work indicates that seawater Os isotope analyses provide useful age control for red clay sequences. The residence time of Os in seawater is relatively long compared to oceanic mixing, therefore the global seawater 187Os/188Os composition is practically homogeneous. A growing body of Late Cretaceous and Cenozoic data has constrained the evolution of the seawater Os isotopic composition and this curve is now a viable stratigraphic tool, employed in dating layers of Fe-Mn crusts (e.g., Klemm et al., 2005). Ravizza (2007) also demonstrated that the seawater Os isotopic composition can be extracted reliably from pelagic red clay sediments by analyzing the leached oxide minerals. The drawback to using seawater Os isotope stratigraphy to date Paleogene age sediments is that the compilation of existing data has some significant temporal gaps, notably between ~38 and 55 Ma. To improve the temporal resolution of the seawater Os isotope curve, we present new data from Ocean Drilling Program (ODP) Site 865 in the equatorial Pacific. Site 865 has excellent biostratigraphic age control over the interval ~38-55Ma. Preliminary data indicate an increase in the seawater composition from 0.427 at 53.4 Ma to 0.499 by 43 Ma, consistent with the apparent trend in the few existing data points. We also analyzed the Os isotopic composition recorded by oxide minerals at Integrated Ocean Drilling Program (IODP) Site U1370 to construct an age model for this predominantly pelagic clay section. The 187Os/188Os values generally increase from 0.312 at 64.46 mbsf to 0.531 at 28.26 mbsf. The low value recorded at 64.46 likely reflects the Os isotope minimum recorded across the K/Pg boundary, while the uppermost value likely correlates to the E/O interval. Comparison of the Os-derived ages with a crude linearly interpolated sedimentation rate age model reveals variations in sediment accumulation rate between 0.86 and 1.5 m/Myr.

Radiocesium interaction with clay minerals: Theory and simulation advances Post-Fukushima.

PubMed

Okumura, Masahiko; Kerisit, Sebastien; Bourg, Ian C; Lammers, Laura N; Ikeda, Takashi; Sassi, Michel; Rosso, Kevin M; Machida, Masahiko

2018-04-14

Insights at the microscopic level of the process of radiocesium adsorption and interaction with clay mineral particles have improved substantially over the past several years, triggered by pressing social issues such as management of huge amounts of waste soil accumulated after the Fukushima Dai-ichi nuclear power plant accident. In particular, computer-based molecular modeling supported by advanced hardware and algorithms has proven to be a powerful approach. Its application can now generally encompass the full complexity of clay particle adsorption sites from basal surfaces to interlayers with inserted water molecules, to edges including fresh and weathered frayed ones. On the other hand, its methodological schemes are now varied from traditional force-field molecular dynamics on large-scale realizations composed of many thousands of atoms including water molecules to first-principles methods on smaller models in rather exacting fashion. In this article, we overview new understanding enabled by simulations across methodological variations, focusing on recent insights that connect with experimental observations, namely: 1) the energy scale for cesium adsorption on the basal surface, 2) progress in understanding the structure of clay edges, which is difficult to probe experimentally, 3) cesium adsorption properties at hydrated interlayer sites, 4) the importance of the size relationship between the ionic radius of cesium and the interlayer distance at frayed edge sites, 5) the migration of cesium into deep interlayer sites, and 6) the effects of nuclear decay of radiocesium. Key experimental observations that motivate these simulation advances are also summarized. Furthermore, some directions toward future solutions of waste soil management are discussed based on the obtained microscopic insights. Copyright © 2018 The Authors. Published by Elsevier Ltd.. All rights reserved.

Radiocesium interaction with clay minerals: Theory and simulation advances Post–Fukushima

DOE PAGES

Okumura, Masahiko; Kerisit, Sebastien; Bourg, Ian C.; ...

2018-03-14

Insights at the microscopic level of the process of radiocesium adsorption and interaction with clay mineral particles have improved substantially over the past several years, triggered by pressing social issues such as management of huge amounts of waste soil accumulated after the Fukushima Dai–ichi nuclear power plant accident. In particular, computer–based molecular modeling supported by advanced hardware and algorithms has proven to be a powerful approach. Its application can now generally encompass the full complexity of clay particle adsorption sites from basal surfaces to interlayers with inserted water molecules, to edges including fresh and weathered frayed ones. On the othermore » hand, its methodological schemes are now varied from traditional force–field molecular dynamics on large–scale realizations composed of many thousands of atoms including water molecules to first–principles methods on smaller models in rather exacting fashion. In this article, we overview new understanding enabled by simulations across methodological variations, focusing on recent insights that connect with experimental observations, namely: 1) the energy scale for cesium adsorption on the basal surface, 2) progress in understanding the structure of clay edges, which is difficult to probe experimentally, 3) cesium adsorption properties at hydrated interlayer sites, 4) the importance of the size relationship between the ionic radius of cesium and the interlayer distance at frayed edge sites, 5) the migration of cesium into deep interlayer sites, and 6) the effects of nuclear decay of radiocesium. Key experimental observations that motivate these simulation advances are also summarized. Furthermore, some directions toward future solutions of waste soil management are discussed based on the obtained microscopic insights.« less

Radiocesium interaction with clay minerals: Theory and simulation advances Post–Fukushima

DOE Office of Scientific and Technical Information (OSTI.GOV)

Okumura, Masahiko; Kerisit, Sebastien; Bourg, Ian C.

Insights at the microscopic level of the process of radiocesium adsorption and interaction with clay mineral particles have improved substantially over the past several years, triggered by pressing social issues such as management of huge amounts of waste soil accumulated after the Fukushima Dai–ichi nuclear power plant accident. In particular, computer–based molecular modeling supported by advanced hardware and algorithms has proven to be a powerful approach. Its application can now generally encompass the full complexity of clay particle adsorption sites from basal surfaces to interlayers with inserted water molecules, to edges including fresh and weathered frayed ones. On the othermore » hand, its methodological schemes are now varied from traditional force–field molecular dynamics on large–scale realizations composed of many thousands of atoms including water molecules to first–principles methods on smaller models in rather exacting fashion. In this article, we overview new understanding enabled by simulations across methodological variations, focusing on recent insights that connect with experimental observations, namely: 1) the energy scale for cesium adsorption on the basal surface, 2) progress in understanding the structure of clay edges, which is difficult to probe experimentally, 3) cesium adsorption properties at hydrated interlayer sites, 4) the importance of the size relationship between the ionic radius of cesium and the interlayer distance at frayed edge sites, 5) the migration of cesium into deep interlayer sites, and 6) the effects of nuclear decay of radiocesium. Key experimental observations that motivate these simulation advances are also summarized. Furthermore, some directions toward future solutions of waste soil management are discussed based on the obtained microscopic insights.« less

South Asian monsoon history over the past 60 kyr recorded by radiogenic isotopes and clay mineral assemblages in the Andaman Sea

NASA Astrophysics Data System (ADS)

Ali, Sajid; Hathorne, Ed C.; Frank, Martin; Gebregiorgis, Daniel; Stattegger, Karl; Stumpf, Roland; Kutterolf, Steffen; Johnson, Joel E.; Giosan, Liviu

2015-02-01

The Late Quaternary variability of the South Asian (or Indian) monsoon has been linked with glacial-interglacial and millennial scale climatic changes but past rainfall intensity in the river catchments draining into the Andaman Sea remains poorly constrained. Here we use radiogenic Sr, Nd, and Pb isotope compositions of the detrital clay-size fraction and clay mineral assemblages obtained from sediment core NGHP Site 17 in the Andaman Sea to reconstruct the variability of the South Asian monsoon during the past 60 kyr. Over this time interval ɛNd values changed little, generally oscillating between -7.3 and -5.3 and the Pb isotope signatures are essentially invariable, which is in contrast to a record located further northeast in the Andaman Sea. This indicates that the source of the detrital clays did not change significantly during the last glacial and deglaciation suggesting the monsoon was spatially stable. The most likely source region is the Irrawaddy river catchment including the Indo-Burman Ranges with a possible minor contribution from the Andaman Islands. High smectite/(illite + chlorite) ratios (up to 14), as well as low 87Sr/86Sr ratios (0.711) for the Holocene period indicate enhanced chemical weathering and a stronger South Asian monsoon compared to marine oxygen isotope stages 2 and 3. Short, smectite-poor intervals exhibit markedly radiogenic Sr isotope compositions and document weakening of the South Asian monsoon, which may have been linked to short-term northern Atlantic climate variability on millennial time scales. This article was corrected on 18 MAR 2015. See the end of the full text for details.

Allothermal steam gasification of biomass in cyclic multi-compartment bubbling fluidized-bed gasifier/combustor - new reactor concept.

PubMed

Iliuta, Ion; Leclerc, Arnaud; Larachi, Faïçal

2010-05-01

A new reactor concept of allothermal cyclic multi-compartment fluidized bed steam biomass gasification is proposed and analyzed numerically. The concept combines space and time delocalization to approach an ideal allothermal gasifier. Thermochemical conversion of biomass in periodic time and space sequences of steam biomass gasification and char/biomass combustion is simulated in which the exothermic combustion compartments provide heat into an array of interspersed endothermic steam gasification compartments. This should enhance unit heat integration and thermal efficiency and procure N(2)-free biosyngas with recourse neither to oxygen addition in steam gasification nor contact between flue and syngas. The dynamic, one-dimensional, multi-component, non-isothermal model developed for this concept accounts for detailed solid and gas flow dynamics whereupon gasification/combustion reaction kinetics, thermal effects and freeboard-zone reactions were tied. Simulations suggest that allothermal operation could be achieved with switch periods in the range of a minute supporting practical feasibility for portable small-scale gasification units. Copyright 2009 Elsevier Ltd. All rights reserved.

Fine-scale structure and micromorphology of the Cricket Flat paleosol, Elgin, Oregon, USA

NASA Astrophysics Data System (ADS)

Murray, K.; Bader, N.

2013-12-01

The Cricket Flat paleosol is located about 9 km east of Elgin, Oregon on Oregon Route 82. The paleosol underlies an olivine basalt of the Powder River Volcanic Field, a sequence of Middle Miocene to Pliocene lavas that overlie the Columbia River Basalt Group in northeastern Oregon. The parent material of the paleosol is a felsic to intermediate lahar that contains leaf and twig fossils as well as tree casts. While some researchers have measured the bulk chemistry and clay mineralogy of this paleosol, no study of its micromorphology has been attempted. In this study we viewed polished thin sections with a petrographic microscope to examine both the parent material and the paleosol. Scanning electron microscopy was used to understand the composition of minerals. Soil texture was analyzed using point counts. Skeleton grains inherited from the parent are mainly plagioclase, orthoclase feldspar, quartz, and volcanic glass. Accessory minerals include titanite, epidote, apatite, and zircon. The paleosol has an argillic horizon with vertic features that are not apparent at the field scale. Diatoms, palynomorphs, and root traces are relatively common in the A horizon of the paleosol. Strong sepic plasmic fabrics and redoximorphic features suggest an environment that was at least seasonally waterlogged and subjected to shrink-swell processes.

Decoding the spatial signatures of multi-scale climate variability - a climate network perspective

NASA Astrophysics Data System (ADS)

Donner, R. V.; Jajcay, N.; Wiedermann, M.; Ekhtiari, N.; Palus, M.

2017-12-01

During the last years, the application of complex networks as a versatile tool for analyzing complex spatio-temporal data has gained increasing interest. Establishing this approach as a new paradigm in climatology has already provided valuable insights into key spatio-temporal climate variability patterns across scales, including novel perspectives on the dynamics of the El Nino Southern Oscillation or the emergence of extreme precipitation patterns in monsoonal regions. In this work, we report first attempts to employ network analysis for disentangling multi-scale climate variability. Specifically, we introduce the concept of scale-specific climate networks, which comprises a sequence of networks representing the statistical association structure between variations at distinct time scales. For this purpose, we consider global surface air temperature reanalysis data and subject the corresponding time series at each grid point to a complex-valued continuous wavelet transform. From this time-scale decomposition, we obtain three types of signals per grid point and scale - amplitude, phase and reconstructed signal, the statistical similarity of which is then represented by three complex networks associated with each scale. We provide a detailed analysis of the resulting connectivity patterns reflecting the spatial organization of climate variability at each chosen time-scale. Global network characteristics like transitivity or network entropy are shown to provide a new view on the (global average) relevance of different time scales in climate dynamics. Beyond expected trends originating from the increasing smoothness of fluctuations at longer scales, network-based statistics reveal different degrees of fragmentation of spatial co-variability patterns at different scales and zonal shifts among the key players of climate variability from tropically to extra-tropically dominated patterns when moving from inter-annual to decadal scales and beyond. The obtained results demonstrate the potential usefulness of systematically exploiting scale-specific climate networks, whose general patterns are in line with existing climatological knowledge, but provide vast opportunities for further quantifications at local, regional and global scales that are yet to be explored.

A new record of late Pliocene-early Pleistocene aeolian loess-red clay deposits from the western Chinese Loess Plateau and its palaeoenvironmental implications

NASA Astrophysics Data System (ADS)

Zan, Jinbo; Fang, Xiaomin; Zhang, Weilin; Yan, Maodu; Zhang, Dawen

2018-04-01

The loess-red clay sequences in northern China provide high-resolution terrestrial records of Asian monsoon evolution and aridification of the Asian interior. To date, however, aeolian deposits of late Pliocene-early Pleistocene age (3.5-2.4 Ma) have only rarely been reported from the western Chinese Loess Plateau (CLP), which significantly hinders our understanding of the distribution of aeolian deposits and the palaeoenvironmental evolution of the region. Here, we present magnetostratigraphic, lithologic and magnetic susceptibility results for two recently-drilled boreholes from the north bank of Baxie River, central Linxia Basin, which are highly correlative with those of the loess-red clay deposits spanning the interval from 3.6 to 2.4 Ma in the eastern CLP. Our results provide the first direct evidence for the occurrence of late Pliocene-early Pleistocene aeolian deposits in the western CLP and provide new insights into the distribution of aeolian deposits in northern China. The spatial coherence of the magnetic susceptibility fluctuations further indicates that magnetic susceptibility is a powerful tool for stratigraphic correlation of late Pliocene aeolian deposits in the western CLP. In addition, our results demonstrate that erosional events may have occurred in the early or middle Pleistocene, and they may provide new insights into the reasons for the absence of loess-red clay deposits from 3.5 to 2.4 Ma in most parts of the western CLP.

Eridania Basin: An ancient paleolake floor as the next landing site for the Mars 2020 rover

NASA Astrophysics Data System (ADS)

Pajola, Maurizio; Rossato, Sandro; Carter, John; Baratti, Emanuele; Pozzobon, Riccardo; Erculiani, Marco Sergio; Coradini, Marcello; McBride, Karen

2016-09-01

The search for traces of past Martian life is directly connected to ancient paleolakes, where ponding water or low-energy water fluxes were present for long time intervals. The Eridania paleolakes system, located along the 180° meridian, is one of the largest lacustrine environments that were once present on Mars. Morphological features suggest that it was constituted by connected depressions filled by water to maximum depths of ∼2400 m and a volume of at least 562,000 km3. We focused our attention on the northern side of the Eridania Basin, where high-albedo, uneven patches of material characterized by the absence of dust are present. Based on OMEGA and CRISM orbital imaging spectroscopy data, a large clay-bearing unit has been identified there. In particular, a set of aqueous minerals in present in the stratigraphy, being visible through erosional windows in the first several tens of meters of the sedimentary sequence. Below this capping unit, a thin Al-rich clay stratum attributable to Al-smectite and/or kaolins is present. This overlies a Fe-rich clay stratum, attributable to the nontronite smectite. At the base of the mineralogic sequence a stratum that could be either a zeolite or more likely a hydrated sulfate is present. In addition, small deposits of alunite (a rare phase on Mars), and jarosite are here found at several locations. Such stratigraphy is interpreted as originating from a surface weathering process similar to terrestrial abiotic pedogenesis; nonetheless, possible exobiologic processes can be also invoked to explain it. NASA's Spirit rover landed on Gusev crater in 2004, near the mouth of the Ma'adim Vallis, which connects this crater with the considered paleolakes system. The Eridania site provides the unique opportunity to complete the measurements obtained in Gusev crater, while investigating the exposed mineralogical sequence in its depositionary setting. In addition, the extremely favorable landing parameters, such as elevation, slope, roughness, rock distribution, thermal inertia and dust coverage, support this location as a possible landing site for the NASA Mars 2020 rover.

Multi-Scale Models for the Scale Interaction of Organized Tropical Convection

NASA Astrophysics Data System (ADS)

Yang, Qiu

Assessing the upscale impact of organized tropical convection from small spatial and temporal scales is a research imperative, not only for having a better understanding of the multi-scale structures of dynamical and convective fields in the tropics, but also for eventually helping in the design of new parameterization strategies to improve the next-generation global climate models. Here self-consistent multi-scale models are derived systematically by following the multi-scale asymptotic methods and used to describe the hierarchical structures of tropical atmospheric flows. The advantages of using these multi-scale models lie in isolating the essential components of multi-scale interaction and providing assessment of the upscale impact of the small-scale fluctuations onto the large-scale mean flow through eddy flux divergences of momentum and temperature in a transparent fashion. Specifically, this thesis includes three research projects about multi-scale interaction of organized tropical convection, involving tropical flows at different scaling regimes and utilizing different multi-scale models correspondingly. Inspired by the observed variability of tropical convection on multiple temporal scales, including daily and intraseasonal time scales, the goal of the first project is to assess the intraseasonal impact of the diurnal cycle on the planetary-scale circulation such as the Hadley cell. As an extension of the first project, the goal of the second project is to assess the intraseasonal impact of the diurnal cycle over the Maritime Continent on the Madden-Julian Oscillation. In the third project, the goals are to simulate the baroclinic aspects of the ITCZ breakdown and assess its upscale impact on the planetary-scale circulation over the eastern Pacific. These simple multi-scale models should be useful to understand the scale interaction of organized tropical convection and help improve the parameterization of unresolved processes in global climate models.

New insights into the paleolake sequence of Baumkirchen (Austria): multiple lake phases and a minor ice advance during MIS 4?

NASA Astrophysics Data System (ADS)

Barrett, Samuel; Starnberger, Reinhard; Spötl, Christoph; Brauer, Achim; Tjallingii, Rik; Dulski, Peter; Abfalterer, Christof

2015-04-01

The sequence of pre-LGM lacustrine sediments at Baumkirchen (Austria) provides a key record in Alpine Quaternary stratigraphy. These sediments from within the boundary of the Alps potentially provide unique insights into the regional paleoclimate. Recent drilling revealed at least ~250m (the base was not reached) of almost entirely mm- to cm-scale lacustrine sediments. The laminated sediments are comprised of alternations between clayey silt and event layers of medium silt to fine sand. The sequence is interrupted only by a short section of gravel supported in an unlaminated clay-rich matrix. Optically stimulated luminescence dating identifies two distinct sequences: the upper sequence spanning mid-late Marine Isotope Stage (MIS) 3 (~33 to ~45 ka BP), agreeing with existing calibrated radiocarbon ages, and the lower section dating to MIS 4 (~59 to ~73 ka BP). Whether the hiatus is an erosional unconformity, or if the sequences represent two separate lake phases is unclear. Although the precise location of the hiatus is hard to identify, the gravel-rich section lies at the very top of the lower sequence. Pebbles in these gravels are largely angular and contain a significant proportion of non-local, regional lithologies. Such gravels are absent in the remainder of the entire 250 m-thick sequence and hence suggest a unique event rather than e.g. an interfingering local delta gravel foresets with the basin sediments. The gravels are therefore likely to be ice-rafted debris from icebergs from nearby glaciers calving into the lake. This therefore represents the first sedimentological evidence of a MIS 4 ice advance in the Eastern Alps. X-ray fluorescence analysis (ITRAX core scanning) of event layers indicates a strong change in the geochemical composition from generally K, Zr and Ti-rich layers in the upper sequence to mainly Ca and/or Si-rich layers in the lower sequence. X-ray diffraction analysis shows the Ca and Si signals to be controlled by carbonate (both calcite and dolomite) and quartz, respectively. This suggests a change in dominant sediment source and may indicate a change in catchment or paleolake configuration, re-raising the long outstanding question of how the lake or lakes were dammed.

Shear strength of clay and silt embankments.

DOT National Transportation Integrated Search

2009-09-01

Highway embankment is one of the most common large-scale geotechnical facilities constructed in Ohio. In the past, the design of these embankments was largely based on soil shear strength properties that had been estimated from previously published e...

Use of mobile gammaspectrometry for estimation of texture at regional scale

NASA Astrophysics Data System (ADS)

Dierke, C.; Werban, U.; Dietrich, P.

2012-04-01

In the last years gamma-ray measurements from air and ground were increasingly used for spatial mapping of physical soil parameters. Many applications of gamma-ray measurements for soil characterisation and in digital soil mapping (DSM) are known from Australia or single once from Northern America. During the last years there are attempts to use that method in Europe as well. The measured isotope concentration of the gamma emitter 40K, 238U and 232Th in soils depends on different soil parameters, which are the result of composition and properties of parent rock and processes during soil geneses under different climatic conditions. Grain size distribution, type of clay minerals and organic matter are soil parameters which influence directly the gamma-ray concentration. From former studies we know, that there are site specific relationships at the field scale between gamma-ray measurements and soil properties. One of the target soil properties in DSM is for e.g. the spatial distribution of texture at the landscape scale. Thus there is a need of more regional understanding of gamma-ray concentration and soil properties with regard to the complex geology of Europe. We did systematic measurements at different field sites across Europe to investigate the relationship between the concentrations of gamma radiant and grain size. The areas are characterised by different pedogenesis and varying clay content. For the measurement we used a mobile 4l Na(I) detector with GPS connection, which is mounted on a sledge and can be towed across the agricultural used plane. Additionally we selected points for soil sampling and analysis of soil texture. For the interpretation we used the single nuclide concentration as well as the ratios. The results show site specific relationships dependent from source material. At soils developed from alluvial sediments the K/Th ratio is an indicator for clay content at regional scale. At soils developed from loess sediments Th can be used do discriminate between fine (clay + silt) and coarse (sand) fraction. This knowledge will led to a more conceptual understanding of gamma-ray measurements at regional scale. These activities are done within the iSOIL project. iSOIL- Interactions between soil related sciences - Linking geophysics, soil science and digital soil mapping is a Collaborative Project (Grant Agreement number 211386) co-funded by the Research DG of the European Commission within the RTD activities of the FP7 Thematic Priority Environment; iSOIL is one member of the SOIL TECHNOLOGY CLUSTER of Research Projects funded by the EC.

On the Salt Water Intrusion into the Durusu Lake, Istanbul: A Joint Central Loop TEM And Multi-Electrode ERT Field Survey

NASA Astrophysics Data System (ADS)

Ardali, Ayça Sultan; Tezkan, Bülent; Gürer, Aysan

2018-02-01

Durusu Lake is the biggest and most important freshwater source supplying drinking water to the European side of Istanbul. In this study, electrical resistivity tomography (ERT) and transient electromagnetic (TEM) measurements were applied to detect a possible salt water intrusion into the lake and to delineate the subsurface structure in the north of Durusu Lake. The ERT and TEM measurements were carried out along six parallel profiles extending from the sea coast to the lake shore on the dune barrier. TEM data were interpreted using different 1-D inversion methods such as Occam, Marquardt, and laterally constrained inversion (LCI). ERT data were interpreted using 2-D inversion techniques. The inversion results of ERT and TEM data were shown as resistivity depth sections including topography. The sand layer spreading over the basin has a resistivity of 150-400 Ωm with a thickness of 5-10 m. The sandy layer with clay, silt, and gravel has a resistivity of 15-100 Ωm and a thickness of 10-40 m followed by a clay layer of a resistivity below 10 Ωm. When the inversion of these data is interpreted along with the hydrogeology of the area, it is concluded that the salt water intrusion along the dune barrier is not common and occurs at a particular area where the distance between lake and sea is very close. Using information from boreholes around the lake, it was verified that the common conductive region at depths of 30 m or more consists of clay layers and clay lenses.

[Rapid determination of major and trace elements in the salt lake clay minerals by X-ray fluorescence spectrometry].

PubMed

Wang, Xiao-Huan; Meng, Qing-Fen; Dong, Ya-Ping; Chen, Mei-Da; Li, Wu

2010-03-01

A rapid multi-element analysis method for clay mineral samples was described. This method utilized a polarized wave-length dispersive X-ray fluorescence spectrometer--Axios PW4400, which had a maximum tube power of 4 000 watts. The method was developed for the determination of As, Mn, Co, Cu, Cr, Dy, Ga, Mo, P, Pb, Rb, S, Sr, Ni, ,Cs, Ta, Th, Ti, U, V, Y, Zn, Zr, MgO, K2O, Na2O, CaO, Fe2O3, Al2O3, SiO2 and so on. Thirty elements in clay mineral species were measured by X-ray fluorescence spectrometry with pressed powder pellets. Spectral interferences, in particular the indirect interferences of each element, were studied. A method to distinguish the interference between each other periodic elements in element periodic table was put forward. The measuring conditions and existence were mainly investigated, and the selected background position as well as corrected spectral overlap for the trace elements were also discussed. It was found that the indirect spectral overlap line was the same important as direct spectral overlap line. Due to inducing the effect of indirect spectral overlap, some elements jlike Bi, Sn, W which do not need analysis were also added to the elements channel. The relative standard deviation (RSD) was in the range of 0.01% to 5.45% except three elements Mo, Cs and Ta. The detection limits, precisions and accuracies for most elements using this method can meet the requirements of sample analysis in clay mineral species.

Variation in Symbiodinium ITS2 sequence assemblages among coral colonies.

PubMed

Stat, Michael; Bird, Christopher E; Pochon, Xavier; Chasqui, Luis; Chauka, Leonard J; Concepcion, Gregory T; Logan, Dan; Takabayashi, Misaki; Toonen, Robert J; Gates, Ruth D

2011-01-05

Endosymbiotic dinoflagellates in the genus Symbiodinium are fundamentally important to the biology of scleractinian corals, as well as to a variety of other marine organisms. The genus Symbiodinium is genetically and functionally diverse and the taxonomic nature of the union between Symbiodinium and corals is implicated as a key trait determining the environmental tolerance of the symbiosis. Surprisingly, the question of how Symbiodinium diversity partitions within a species across spatial scales of meters to kilometers has received little attention, but is important to understanding the intrinsic biological scope of a given coral population and adaptations to the local environment. Here we address this gap by describing the Symbiodinium ITS2 sequence assemblages recovered from colonies of the reef building coral Montipora capitata sampled across Kāne'ohe Bay, Hawai'i. A total of 52 corals were sampled in a nested design of Coral Colony(Site(Region)) reflecting spatial scales of meters to kilometers. A diversity of Symbiodinium ITS2 sequences was recovered with the majority of variance partitioning at the level of the Coral Colony. To confirm this result, the Symbiodinium ITS2 sequence diversity in six M. capitata colonies were analyzed in much greater depth with 35 to 55 clones per colony. The ITS2 sequences and quantitative composition recovered from these colonies varied significantly, indicating that each coral hosted a different assemblage of Symbiodinium. The diversity of Symbiodinium ITS2 sequence assemblages retrieved from individual colonies of M. capitata here highlights the problems inherent in interpreting multi-copy and intra-genomically variable molecular markers, and serves as a context for discussing the utility and biological relevance of assigning species names based on Symbiodinium ITS2 genotyping.

Variation in Symbiodinium ITS2 Sequence Assemblages among Coral Colonies

PubMed Central

Stat, Michael; Bird, Christopher E.; Pochon, Xavier; Chasqui, Luis; Chauka, Leonard J.; Concepcion, Gregory T.; Logan, Dan; Takabayashi, Misaki; Toonen, Robert J.; Gates, Ruth D.

2011-01-01

Endosymbiotic dinoflagellates in the genus Symbiodinium are fundamentally important to the biology of scleractinian corals, as well as to a variety of other marine organisms. The genus Symbiodinium is genetically and functionally diverse and the taxonomic nature of the union between Symbiodinium and corals is implicated as a key trait determining the environmental tolerance of the symbiosis. Surprisingly, the question of how Symbiodinium diversity partitions within a species across spatial scales of meters to kilometers has received little attention, but is important to understanding the intrinsic biological scope of a given coral population and adaptations to the local environment. Here we address this gap by describing the Symbiodinium ITS2 sequence assemblages recovered from colonies of the reef building coral Montipora capitata sampled across Kāne'ohe Bay, Hawai'i. A total of 52 corals were sampled in a nested design of Coral Colony(Site(Region)) reflecting spatial scales of meters to kilometers. A diversity of Symbiodinium ITS2 sequences was recovered with the majority of variance partitioning at the level of the Coral Colony. To confirm this result, the Symbiodinium ITS2 sequence diversity in six M. capitata colonies were analyzed in much greater depth with 35 to 55 clones per colony. The ITS2 sequences and quantitative composition recovered from these colonies varied significantly, indicating that each coral hosted a different assemblage of Symbiodinium. The diversity of Symbiodinium ITS2 sequence assemblages retrieved from individual colonies of M. capitata here highlights the problems inherent in interpreting multi-copy and intra-genomically variable molecular markers, and serves as a context for discussing the utility and biological relevance of assigning species names based on Symbiodinium ITS2 genotyping. PMID:21246044

Detection and cultivation of indigenous microorganisms in Mesozoic claystone core samples from the Opalinus Clay Formation (Mont Terri Rock Laboratory)

NASA Astrophysics Data System (ADS)

Mauclaire, L.; McKenzie, J. A.; Schwyn, B.; Bossart, P.

Although microorganisms have been isolated from various deep-subsurface environments, the persistence of microbial activity in claystones buried to great depths and on geological time scales has been poorly studied. The presence of in-situ microbial life in the Opalinus Clay Formation (Mesozoic claystone, 170 million years old) at the Mont Terri Rock Laboratory, Canton Jura, Switzerland was investigated. Opalinus Clay is a host rock candidate for a radioactive waste repository. Particle tracer tests demonstrated the uncontaminated nature of the cored samples, showing their suitability for microbiological investigations. To determine whether microorganisms are a consistent and characteristic component of the Opalinus Clay Formation, two approaches were used: (i) the cultivation of indigenous micoorganisms focusing mainly on the cultivation of sulfate-reducing bacteria, and (ii) the direct detection of molecular biomarkers of bacteria. The goal of the first set of experiments was to assess the presence of cultivable microorganisms within the Opalinus Clay Formation. After few months of incubation, the number of cell ranged from 0.1 to 2 × 10 3 cells ml -1 media. The microorganisms were actively growing as confirmed by the observation of dividing cells, and detection of traces of sulfide. To avoid cultivation bias, quantification of molecular biomarkers (phospholipid fatty acids) was used to assess the presence of autochthonous microorganisms. These molecules are good indicators of the presence of living cells. The Opalinus Clay contained on average 64 ng of PLFA g -1 dry claystone. The detected microbial community comprises mainly Gram-negative anaerobic bacteria as indicated by the ratio of iso/anteiso phospholipids (about 2) and the detection of large amount of β-hydroxy substituted fatty acids. The PLFA composition reveals the presence of specific functional groups of microorganisms in particular sulfate-reducing bacteria ( Desulfovibrio, Desulfobulbus, and Desulfobacter). This study demonstrates that microorganisms are a characteristic component of the unperturbed Opalinus Clay Formation.

Neoformation of clay in lateral root catchments of mallee eucalypts: a chemical perspective

PubMed Central

Verboom, William H.; Pate, John S.; Aspandiar, Mehrooz

2010-01-01

Background and Aims A previous paper (Annals of Botany 103: 673–685) described formation of clayey pavements in lateral root catchments of eucalypts colonizing a recently formed sand dune in south-west Western Australia. Here chemical and morphological aspects of their formation at the site are studied. Methods Chemical and physical examinations of soil cores through pavements and sand under adjacent heath assessed build-up of salts, clay and pH changes in or below pavements. Relationships of root morphology to clay deposition were examined and deposits subjected to scanning electron microscopy and energy-dispersive X-ray analysis. Xylem transport of mineral elements in eucalypt and non-eucalypt species was studied by analysis of xylem (tracheal) sap from lateral roots. Key Results The columns of which pavements are composed develop exclusively on lower-tier lateral roots. Such sites show intimate associations of fine roots, fungal filaments, microbiota and clay deposits rich in Si, Al and Fe. Time scales for construction of pavements by eucalypts were assessed. Cores through columns of pavemented profiles showed gross elevations of bulk density, Al, Fe and Si in columns and related increases in pH, Mg and Ca status in lower profiles. A cutting through the dune exhibited pronounced alkalinity (pH 7–10) under mallee woodland versus acidity (pH 5–6·5) under proteaceous heath. Xylem sap analyses showed unusually high concentrations of Al, Fe, Mg and Si in dry-season samples from column-bearing roots. Conclusions Deposition of Al–Fe–Si-rich clay is pivotal to pavement construction by eucalypts and leads to profound chemical and physical changes in relevant soil profiles. Microbial associates of roots are likely to be involved in clay genesis, with parent eucalypts supplying the required key mineral elements and carbon sources. Acquisition of the Al and Fe incorporated into clay derives principally from hydraulic uplift from ground water via deeply penetrating tap roots. PMID:19897459

Soft X-ray spectromicroscopy study of mineral-organic matter associations in pasture soil clay fractions.

PubMed

Chen, Chunmei; Dynes, James J; Wang, Jian; Karunakaran, Chithra; Sparks, Donald L

2014-06-17

There is a growing acceptance that associations with soil minerals may be the most important overarching stabilization mechanism for soil organic matter. However, direct investigation of organo-mineral associations has been hampered by a lack of methods that can simultaneously characterize organic matter (OM) and soil minerals. In this study, STXM-NEXAFS spectroscopy at the C 1s, Ca 2p, Fe 2p, Al 1s, and Si 1s edges was used to investigate C associations with Ca, Fe, Al, and Si species in soil clay fractions from an upland pasture hillslope. Bulk techniques including C and N NEXAFS, Fe K-edge EXAFS spectroscopy, and XRD were applied to provide additional information. Results demonstrated that C was associated with Ca, Fe, Al, and Si with no separate phase in soil clay particles. In soil clay particles, the pervasive C forms were aromatic C, carboxyl C, and polysaccharides with the relative abundance of carboxyl C and polysaccharides varying spatially at the submicrometer scale. Only limited regions in the soil clay particles had aliphatic C. Good C-Ca spatial correlations were found for soil clay particles with no CaCO3, suggesting a strong role of Ca in organo-mineral assemblage formation. Fe EXAFS showed that about 50% of the total Fe in soils was contained in Fe oxides, whereas Fe-bearing aluminosilicates (vermiculite and Illite) accounted for another 50%. Fe oxides in the soil were mainly crystalline goethite and hematite, with lesser amounts of poorly crystalline ferrihydrite. XRD revealed that soil clay aluminosilicates were hydroxy-interlayered vermiculite, Illite, and kaolinite. C showed similar correlation with Fe to Al and Si, implying a similar association of Fe oxides and aluminosilicates with organic matter in organo-mineral associations. These direct microscopic determinations can help improve understanding of organo-mineral interactions in soils.

Architecture and reservoir quality of low-permeable Eocene lacustrine turbidite sandstone from the Dongying Depression, East China

NASA Astrophysics Data System (ADS)

Munawar, Muhammad Jawad; Lin, Chengyan; Chunmei, Dong; Zhang, Xianguo; Zhao, Haiyan; Xiao, Shuming; Azeem, Tahir; Zahid, Muhammad Aleem; Ma, Cunfei

2018-05-01

The architecture and quality of lacustrine turbidites that act as petroleum reservoirs are less well documented. Reservoir architecture and multiscale heterogeneity in turbidites represent serious challenges to production performance. Additionally, establishing a hierarchy profile to delineate heterogeneity is a challenging task in lacustrine turbidite deposits. Here, we report on the turbidites in the middle third member of the Eocene Shahejie Formation (Es3), which was deposited during extensive Middle to Late Eocene rifting in the Dongying Depression. Seismic records, wireline log responses, and core observations were integrated to describe the reservoir heterogeneity by delineating the architectural elements, sequence stratigraphic framework and lithofacies assemblage. A petrographic approach was adopted to constrain microscopic heterogeneity using an optical microscope, routine core analyses and X-ray diffraction (XRD) analyses. The Es3m member is interpreted as a sequence set composed of four composite sequences: CS1, CS2, CS3 and CS4. A total of forty-five sequences were identified within these four composite sequences. Sand bodies were mainly deposited as channels, levees, overbank splays, lobes and lobe fringes. The combination of fining-upward and coarsening-upward lithofacies patterns in the architectural elements produces highly complex composite flow units. Microscopic heterogeneity is produced by diagenetic alteration processes (i.e., feldspar dissolution, authigenic clay formation and quartz cementation). The widespread kaolinization of feldspar and mobilization of materials enhanced the quality of the reservoir by producing secondary enlarged pores. In contrast, the formation of pore-filling authigenic illite and illite/smectite clays reduced its permeability. Recovery rates are higher in the axial areas and smaller in the marginal areas of architectural elements. This study represents a significant insight into the reservoir architecture and heterogeneity of lacustrine turbidites, and the understanding of compartmentalization and distribution of high-quality sand reservoirs can be applied to improve primary and secondary production in these fields.

Oligo-Miocene reservoir sequence characterization and structuring in the Sisseb El Alem-Kalaa Kebira regions (Northeastern Tunisia)

NASA Astrophysics Data System (ADS)

Houatmia, Faten; Khomsi, Sami; Bédir, Mourad

2015-11-01

The Sisseb El Alem-Enfidha basin is located in the northeastern Tunisia, It is borded by Nadhour - Saouaf syncline to the north, Kairouan plain to the south, the Mediterranean Sea to the east and Tunisian Atlassic "dorsale" to the west. Oligocene and Miocene deltaic deposits present the main potential deep aquifers in this basin with high porosity (25%-30%). The interpretation of twenty seismic reflection profiles, calibrated by wire line logging data of twelve oil wells, hydraulic wells and geologic field sections highlighted the impact of tectonics on the structuring geometry of Oligo-Miocene sandstones reservoirs and their distribution in raised structures and subsurface depressions. Miocene seismostratigraphy analysis from Ain Ghrab Formation (Langhian) to the Segui Formation (Quaternary) showed five third-order seismic sequence deposits and nine extended lenticular sandy bodies reservoirs limited by toplap and downlap surfaces unconformities, Oligocene deposits presented also five third- order seismic sequences with five extended lenticular sandy bodies reservoirs. The Depth and the thickness maps of these sequence reservoir packages exhibited the structuring of this basin in sub-basins characterized by important lateral and vertical geometric and thichness variations. Petroleum wells wire line logging correlation with clay volume calculation showed an heterogeneous multilayer reservoirs of Oligocene and Miocene formed by the arrangement of fourteen sandstone bodies being able to be good reservoirs, separated by impermeable clay packages and affected by faults. Reservoirs levels correspond mainly to the lower system tract (LST) of sequences. Intensive fracturing by deep seated faults bounding the different sub-basins play a great role for water surface recharge and inter-layer circulations between affected reservoirs. The total pore volume of the Oligo-Miocene reservoir sandy bodies in the study area, is estimated to about 4 × 1012 m3 and equivalent to 4 × 109 m3 of deep water reserves.

Exploring the potential of hyper-spectral imaging for the biogeochemical analysis of varved lake sediments

NASA Astrophysics Data System (ADS)

Butz, Christoph; Grosjean, Martin; Enters, Dirk; Tylmann, Wojciech

2014-05-01

Varved lake sediments have successfully been used to make inferences about past environmental and climate conditions from annual to multi-millennial scales. Among other proxies, concentrations of sedimentary photopigments have been used for temperature reconstructions. However, obtaining well calibrated annually resolved records from sediments still remains challenging. Most laboratory methods used to analyse lake sediments require physical subsampling and are destructive in the process. Hence, temporal resolution and number of data are limited by the amount of material available in the core. Furthermore, for very low sediment accumulation rates annual subsampling is often very difficult or even impossible. To address these problems we explore hyper-spectral imaging as a new method to analyse lake sediments based on their reflectance spectra in the visible and near infrared spectrum. In contrast to other fast and non-destructive methods like X-ray fluorescence, VIS/NIR reflectance spectrometry distinguishes between biogeochemical substances rather than single elements. Rein (2003) has shown that VIS-RS can be used to detect relative concentrations of sedimentary photopigments (e.g. chlorins, carotenoids) and clay minerals. This study presents an advanced approach using a hyper-spectral camera and remote sensing techniques to infer climate proxy data from reflectance spectra of varved lake sediments. Hyper-spectral imaging allows analysing an entire sediment core in a single measurement, producing a spectral dataset with very high spatial (30x30µm/pixel) and spectral resolutions (~1nm) and a higher spectral range (400-1000nm) compared to previously used spectrophotometers. This allows the analysis of data time series at sub-varve scales or spatial mapping of sedimentary substances (e.g. chlorophyll-a and diagenetic products) at very high resolution. The method is demonstrated on varved lake sediments from northern Poland showing the change of the relative concentrations of chlorin pigments within individual varve years. In a next step absolute concentrations of chlorins derived from HPLC measurements have been calibrated to the spectral data using a linear regression model. This results in a very high-resolution dataset of absolute sedimentary pigment concentrations. In a second example µXRF measurements are used to validate a spectral index for clay mineral detection.

Direct shear characterisation of simulated clay-bearing gouges: a case study from the Pernicana Fault System (Mount Etna, Sicily)

NASA Astrophysics Data System (ADS)

Ougier-Simonin, Audrey; Castagna, Angela; Benson, Philip; Walker, Richard

2017-04-01

Fault stability and shear strength are strongly controlled by the mechanical and frictional properties of the rocks and gouges involved. The Pernicana Fault System (PFS) is a first order bounding fault of the unstable sector of Mount Etna volcano (Italy). The PFS is a mature fault zone and one of the most active amongst the fault systems of the eastern sliding flank, showing transition from seismic in the upper part, to aseismic behaviour in the lower part toward the Ionian Sea. The PFS is expressed intermittently at the surface as a steeply-dipping fault, but the location at depth within the sedimentary basement beneath Etna remains highly debated. The basement is complex, comprising flyschoid formations of mostly carbonate, sandstone and claystone belonging to the Appenninic-Maghrebian Chain (AMC), which lie above foreland carbonate sequences from the Hyblean Plateau (HP) belonging to the African plate. Furthermore, the south-eastern sector of Mount Etna lies on quaternary foredeep deposits of silt and clay. Recent studies have highlighted the presence of water in the system that may play a major role as a triggering mechanism of sliding. In this study, we perform triaxial tests using synthetic gouges in direct shear sliding holders to explore the frictional properties of the main lithology types (namely carbonate, sandstone and clays) identified and collected in the AMC and HP units. Samples of carbonate ( 98% CaCO3) and sandstone ( 98% SiO2) were manually crushed and then milled using a planetary mill, while clays (clay fraction composed by chlorite, smectite, mica, and kaolinite) were worked manually to preserve clay minerals. Powders of carbonate and sandstone were sieved and selected in a range between <180 µm and >63 µm, while natural clay were sieved to <45 µm (fine silt-clay) for the experiments. The holders, specifically designed and built for this project, allow for up to 10 mm of total displacement over a surface of 54 mm width and 98 mm length, and are equipped with pore fluid inserts for experiments in water-saturated conditions. The triaxial cell has a confining pressure capacity of 0-140 MPa and temperature capacity of 20-200°C. Here we present the results of a first set of experiments conducted at a displacement rate of 0.001 mm/s, using gouges prepared to represent the end-members of each lithology, and as mixtures of carbonate and sandstone gouges with 10%-25%-50% clays. Overall, this study aims to determine the control of pore fluids on the frictional properties of simulated gouges for the Etnean basement under representative stress conditions and to inform numerical modelling of the likely development of the PFS at depth.

A microstructural study of SAFOD gouge from actively creeping San Andreas Fault zone; Implications for shear localization models

NASA Astrophysics Data System (ADS)

Blackburn, E. D.; Hadizadeh, J.; Babaie, H. A.

2009-12-01

The prevailing models of shear localization in fault gouges are mainly based on experimental aggregates that necessarily neglect the effects of chemical and mechanical maturation with time. The SAFOD cores have provided a chance to test whether cataclasis as a deformation mechanism and factors such as porosity and particle size, critical in some existing shear localization models continue to be critical in mature gouges. We studied a core sample from 3194m MD in the SAFOD phase 3, which consists of intensely foliated shale-siltstone cataclasites in contact with less deformed shale. Microstructures were studied in 3 perpendicular planes with reference to foliation using high resolution scanning electron microscopy, cathodoluminescence imaging, X-ray fluorescence mapping, and energy dispersive X-ray spectroscopy. The cataclastic foliation, recognizable at length scales >100 μm, is primarily defined by bands of clay gouge with distinct microstructure, clay content, and porosity. Variations in elemental composition and porosity of the clay gouge were measured continuously across the foliation. Prominent features within the foliation bands include lens-shaped clusters of highly brecciated and veined siltstone fragments, pyrite smears, and pyrite-cemented cataclasites. The microstructural relations and chemical data provide clear evidence of multiple episodes of veining and deformation with some possibility of relative age determination for the episodes. There is evidence of syn-deformation hydrothermal changes including growth and brittle shear of pyrite, alteration of host shale clays to illite-smectite clays and Fe-rich smectite. Evidence of grain-boundary corrosion of non-clay mineral fragments suggests pressure solution creep. The gouge porosity estimates varied from 0-18% (about 3% in less deformed shale) with the highest value in the bands with abundant siltstone fragments. The banding is mechanically significant since it pervasively segregates the gouge into regions of low clay content, high-porosity and regions of low-porosity, high clay content. It appears from our data that shear localization in the gouge involves pressure solution as well as cataclastic flow assisted by alteration-softening. While the porous bands are potential conduits for fluid flow and could be sites for pressure solution creep, the clay-rich bands could serve as sites of shear localization due to their lower dilatancy rate. A better understanding of interaction between the two deformation mechanisms might shed light on the nature of microearthquake activity in the creeping segment of the SAF.

A segmentation method for lung nodule image sequences based on superpixels and density-based spatial clustering of applications with noise

PubMed Central

Zhang, Wei; Zhang, Xiaolong; Qiang, Yan; Tian, Qi; Tang, Xiaoxian

2017-01-01

The fast and accurate segmentation of lung nodule image sequences is the basis of subsequent processing and diagnostic analyses. However, previous research investigating nodule segmentation algorithms cannot entirely segment cavitary nodules, and the segmentation of juxta-vascular nodules is inaccurate and inefficient. To solve these problems, we propose a new method for the segmentation of lung nodule image sequences based on superpixels and density-based spatial clustering of applications with noise (DBSCAN). First, our method uses three-dimensional computed tomography image features of the average intensity projection combined with multi-scale dot enhancement for preprocessing. Hexagonal clustering and morphological optimized sequential linear iterative clustering (HMSLIC) for sequence image oversegmentation is then proposed to obtain superpixel blocks. The adaptive weight coefficient is then constructed to calculate the distance required between superpixels to achieve precise lung nodules positioning and to obtain the subsequent clustering starting block. Moreover, by fitting the distance and detecting the change in slope, an accurate clustering threshold is obtained. Thereafter, a fast DBSCAN superpixel sequence clustering algorithm, which is optimized by the strategy of only clustering the lung nodules and adaptive threshold, is then used to obtain lung nodule mask sequences. Finally, the lung nodule image sequences are obtained. The experimental results show that our method rapidly, completely and accurately segments various types of lung nodule image sequences. PMID:28880916

aLeaves facilitates on-demand exploration of metazoan gene family trees on MAFFT sequence alignment server with enhanced interactivity.

PubMed

Kuraku, Shigehiro; Zmasek, Christian M; Nishimura, Osamu; Katoh, Kazutaka

2013-07-01

We report a new web server, aLeaves (http://aleaves.cdb.riken.jp/), for homologue collection from diverse animal genomes. In molecular comparative studies involving multiple species, orthology identification is the basis on which most subsequent biological analyses rely. It can be achieved most accurately by explicit phylogenetic inference. More and more species are subjected to large-scale sequencing, but the resultant resources are scattered in independent project-based, and multi-species, but separate, web sites. This complicates data access and is becoming a serious barrier to the comprehensiveness of molecular phylogenetic analysis. aLeaves, launched to overcome this difficulty, collects sequences similar to an input query sequence from various data sources. The collected sequences can be passed on to the MAFFT sequence alignment server (http://mafft.cbrc.jp/alignment/server/), which has been significantly improved in interactivity. This update enables to switch between (i) sequence selection using the Archaeopteryx tree viewer, (ii) multiple sequence alignment and (iii) tree inference. This can be performed as a loop until one reaches a sensible data set, which minimizes redundancy for better visibility and handling in phylogenetic inference while covering relevant taxa. The work flow achieved by the seamless link between aLeaves and MAFFT provides a convenient online platform to address various questions in zoology and evolutionary biology.

aLeaves facilitates on-demand exploration of metazoan gene family trees on MAFFT sequence alignment server with enhanced interactivity

PubMed Central

Kuraku, Shigehiro; Zmasek, Christian M.; Nishimura, Osamu; Katoh, Kazutaka

2013-01-01

We report a new web server, aLeaves (http://aleaves.cdb.riken.jp/), for homologue collection from diverse animal genomes. In molecular comparative studies involving multiple species, orthology identification is the basis on which most subsequent biological analyses rely. It can be achieved most accurately by explicit phylogenetic inference. More and more species are subjected to large-scale sequencing, but the resultant resources are scattered in independent project-based, and multi-species, but separate, web sites. This complicates data access and is becoming a serious barrier to the comprehensiveness of molecular phylogenetic analysis. aLeaves, launched to overcome this difficulty, collects sequences similar to an input query sequence from various data sources. The collected sequences can be passed on to the MAFFT sequence alignment server (http://mafft.cbrc.jp/alignment/server/), which has been significantly improved in interactivity. This update enables to switch between (i) sequence selection using the Archaeopteryx tree viewer, (ii) multiple sequence alignment and (iii) tree inference. This can be performed as a loop until one reaches a sensible data set, which minimizes redundancy for better visibility and handling in phylogenetic inference while covering relevant taxa. The work flow achieved by the seamless link between aLeaves and MAFFT provides a convenient online platform to address various questions in zoology and evolutionary biology. PMID:23677614

A novel visual saliency detection method for infrared video sequences

NASA Astrophysics Data System (ADS)

Wang, Xin; Zhang, Yuzhen; Ning, Chen

2017-12-01

Infrared video applications such as target detection and recognition, moving target tracking, and so forth can benefit a lot from visual saliency detection, which is essentially a method to automatically localize the ;important; content in videos. In this paper, a novel visual saliency detection method for infrared video sequences is proposed. Specifically, for infrared video saliency detection, both the spatial saliency and temporal saliency are considered. For spatial saliency, we adopt a mutual consistency-guided spatial cues combination-based method to capture the regions with obvious luminance contrast and contour features. For temporal saliency, a multi-frame symmetric difference approach is proposed to discriminate salient moving regions of interest from background motions. Then, the spatial saliency and temporal saliency are combined to compute the spatiotemporal saliency using an adaptive fusion strategy. Besides, to highlight the spatiotemporal salient regions uniformly, a multi-scale fusion approach is embedded into the spatiotemporal saliency model. Finally, a Gestalt theory-inspired optimization algorithm is designed to further improve the reliability of the final saliency map. Experimental results demonstrate that our method outperforms many state-of-the-art saliency detection approaches for infrared videos under various backgrounds.

Expected and unexpected features in soil chronosequences in SE-Norway: Podzolization in Albeluvisols and Lessivage in Podzols

NASA Astrophysics Data System (ADS)

Sauer, D.; Schülli-Maurer, I.; Sperstad, R.; Sørensen, R.; Stahr, K.

2009-04-01

Introduction The Oslofjord region in SE-Norway has been subject to steady glacio-isostatic uplift during the whole Holocene. The final retreat of the ice at the termination of the last glacial took place in this area between 13,900 (retreat from Hvaler ice-marginal ridge) and 11,500 years BP (retreat from Ski ice-marginal ridge). Since then, the area has been characterized by continuous glacio-isostatic uplift. The upper limit of the former sea level varies between 155 m a.s.l. at Larvik, Vestfold, and 190 m a.s.l. at Halden, Østfold. This region provides particularly suitable conditions for studying soil development with time, because land surface age continuously increases from the coast inland. Several sea level curves, based on radiocarbon datings, enable estimation of land surface age for all locations. Study areas Soil chronosequences have been studied in the counties Vestfold and Østfold situated at the western and eastern side of the Oslofjord, between 59° and 59°40' North and 10° to 11°30' East. The climate in the study area is moist and comparatively mild, with mean annual temperatures ranging between 4.8 and 6.4 °C and a mean annual precipitation of 909 - 1150 mm in Vestfold and 770 - 880 mm in Østfold. The vegetation consists predominantly of mixed forest. Soil formation in loamy marine sediments leads to Albeluvisols; soil development in beach sand to Podzols. The soil chronosequences Twelve pedons were studied in loamy marine sediments under forest, six each in Vestfold and Østfold respectively. Land surface ages at the sites range from 1650 to 11 050 years. In addition, three samples of fresh sediments were taken from the shore line. The fresh sediments were characterized by varying amounts of carbonates in the form of shell fragments. Rapid drop in pH during drying of the samples indicated the presence of sulfides. Clay illuviation in the loamy sediments started in less than 1,650 years. E horizons became lighter with age, but their lower boundary stayed around 40 cm for more than 10,000 years. Albeluvic tongues developed between 4,600 and 6,200 years. Initially, they formed along intersections of cracks. As preferential flow and leaching along the cracks continued, the tongues increased in length and width, progressively consuming the prisms between the cracks in the upper Bt horizon. The two oldest soils of each sequence (VF7.3 and VF9 in Vestfold, and ØF8 and ØF11 in Østfold) were typical Albeluvisols with clay coatings in the Bt horizons and well expressed albeluvic tonguing. Iron-manganese nodules in the E horizons and gray ped surfaces and mottled ped interior in the Bt horizons indicated temporary water stagnation in these soils. Six pedons in sandy beach deposits with ages ranging from 2,300 to 9,650 years were studied in Vestfold. The youngest soil showed no evidence of podzolization, while slight lightening of the A horizon of the second soil (3,800 years) indicated initial leaching of organic matter. In the 4,300 years old soil also iron and humus accumulation in the B horizon were perceptible, but only the 6,600 years and older soils exhibited spodic horizons and were thus classified as Podzols. Expected and unexpected features During Albeluvisol development, the upper part of the E horizon turned brown, as soon as it became too acid for further clay mobilization, while weathering and brunification continued. Further acidification led to initial podzolization, provided enough time and presence of vegetation producing hard-to-decompose litter. The oldest soil of each Albeluvisol sequence, i. e. the 9,000 year-old soil in Vestfold and the 11,050 year-old soil in Østfold, showed initial podzolization in the A horizon and upper part of the former E horizon. However, the 6,550 year-old soil in Østfold also exhibited already initial podzolization. All three soils showing podzolization were under coniferous forest, in contrast to the other soils of the sequence that were under mixed forest. The fact that a 6,550 year-old soil under coniferous exhibited already initial podzolization, whereas in contrast, a 9,750 year-old soil under mixed forest was not yet podzolized, indicates that acidification and beginning podzolization is not primarily a result of time but of vegetation. Initial podzolization in the upper parts of Albeluvisols has been reported in various studies; more unexpected than this phenomenon was, vice versa, the occurrence of well-expressed clay coatings below the Bs horizons in several soils of the beach sand sequence. These clay coatings had not been recognized during field work, but were clearly visible under the microscope. The youngest soil, a 2,300 year-old Endostagnic Umbrisol with the horizon sequence Ah1-Ah2-Bw-BC-Cg1, exhibited well-developed clay coatings in the BC horizon (46-56 cm depth). The 7,650 year-old Endostagnic Podzol (AE-Bsh-Bs1-Bs2-BCg) had thin clay coatings in the Bs2 horizon (40-65 cm depth). Apparently, the beach sands were sufficiently buffered during the first millennia of soil formation so that acidification proceeded slowly enough to allow for clay translocation prior to podzolization.

Uranium minerals in Oligocene gypsum near Chadron, Dawes County, Nebraska

USGS Publications Warehouse

Dunham, R.J.

1955-01-01

Carnotite, sabugalite [HAI(UO2)4(PO4)4 • 16H2O] and autunite occur in the basal 25 feet of a 270-foot sequence of nonmarine bedded gypsum and gypsiferous clay in the Brule formation of Oligocene age about 12 miles northeast of Chadron in northeastern Dawes County, Nebraska. Uranium minerals are visible at only two localities and are associated with carbonaceous matter. Elsewhere the basal 25 feet of the gypsum sequence is interbedded with carbonate rocks and is weakly but persistently uraniferous. Uranium probably was emplaced from above by uranyl solutions rich in sulfate.

The TRMM Multi-Satellite Precipitation Analysis (TMPA)

NASA Technical Reports Server (NTRS)

Huffman, George J.; Adler, Robert F.; Bolvin, David T.; Nelkin, Eric J.

2008-01-01

The Tropical Rainfall Measuring Mission (TRMM) Multi-satellite Precipitation Analysis (TMPA) is intended to provide a "best" estimate of quasi-global precipitation from the wide variety of modern satellite-borne precipitation-related sensors. Estimates are provided at relatively fine scales (0.25degx0.25deg, 3-hourly) in both real and post-real time to accommodate a wide range of researchers. However, the errors inherent in the finest scale estimates are large. The most successful use of the TMPA data is when the analysis takes advantage of the fine-scale data to create time/space averages appropriate to the user s application. We review the conceptual basis for the TMPA, summarize the processing sequence, and focus on two new activities. First, a recent upgrade to the real-time version incorporates several additional satellite data sources and employs monthly climatological adjustments to approximate the bias characteristics of the research quality post-real-time product. Second, an upgrade of the research quality post-real-time TMPA from Version 6 to Version 7 (in beta test at press time) is designed to provide a variety of improvements that increase the list of input data sets and correct several issues. Future enhancements for the TMPA will include improved error estimation, extension to higher latitudes, and a shift to a Lagrangian time interpolation scheme.

The TRMM Multi-Satellite Precipitation Analysis (TMPA)

NASA Technical Reports Server (NTRS)

Huffman, George J.; Adler, Robert F.; Bolvin, David T.; Nelkin, Eric J.

2010-01-01

The Tropical Rainfall Measuring Mission (TRMM) Multi-satellite Precipitation Analysis (TMPA) is intended to provide a "best" estimate of quasi-global precipitation from the wide variety of modern satellite-borne precipitation-related sensors. Estimates are provided at relatively fine scales (0.25 deg x 0.25 deg. 3-h) in both real and post-real time to accommodate a wide range of researchers. However, the errors inherent in the finest scale estimates are large. The most successful use of the TMPA data is when the analysis takes advantage of the fine-scale data to create time/space averages appropriate to the user fs application. We review the conceptual basis for the TMPA, summarize the processing sequence, and focus on two new activities. First, a recent upgrade for the real-time version incorporates several additional satellite data sources and employs monthly climatological adjustments to approximate the bias characteristics of the research quality post-real-time product. Second, an upgrade for the research quality post-real-time TMPA from Versions 6 to 7 (in beta test at press time) is designed to provide a variety of improvements that increase the list of input data sets and correct several issues. Future enhancements for the TMPA will include improved error estimation, extension to higher latitudes, and a shift to a Lagrangian time interpolation scheme.

Toward a Multi-scale Phase Transition Kinetics Methodology: From Non-Equilibrium Statistical Mechanics to Hydrodynamics

NASA Astrophysics Data System (ADS)

Belof, Jonathan; Orlikowski, Daniel; Wu, Christine; McLaughlin, Keith

2013-06-01

Shock and ramp compression experiments are allowing us to probe condensed matter under extreme conditions where phase transitions and other non-equilibrium aspects can now be directly observed, but first principles simulation of kinetics remains a challenge. A multi-scale approach is presented here, with non-equilibrium statistical mechanical quantities calculated by molecular dynamics (MD) and then leveraged to inform a classical nucleation and growth kinetics model at the hydrodynamic scale. Of central interest is the free energy barrier for the formation of a critical nucleus, with direct NEMD presenting the challenge of relatively long timescales necessary to resolve nucleation. Rather than attempt to resolve the time-dependent nucleation sequence directly, the methodology derived here is built upon the non-equilibrium work theorem in order to bias the formation of a critical nucleus and thus construct the nucleation and growth rates. Having determined these kinetic terms from MD, a hydrodynamics implementation of Kolmogorov-Johnson-Mehl-Avrami (KJMA) kinetics and metastabilty is applied to the dynamic compressive freezing of water and compared with recent ramp compression experiments [Dolan et al., Nature (2007)] Lawrence Livermore National Laboratory is operated by Lawrence Livermore National Security, LLC, for the U.S. Department of Energy, National Nuclear Security Administration under Contract DE-AC52-07NA27344.

High resolution analysis of northern Patagonia lake sediments

NASA Astrophysics Data System (ADS)

Jarvis, S. W.; Croudace, I. W.; Langdon, P. G.; Rindby, A.

2009-04-01

Sediment cores covering the period from the last glacial maximum through the Holocene to the present have been collected from sites in the Chacubuco valley, southern Chile (around 47°08'S, 72°25'W, to the east of the North Patagonian Icecap). Cores were taken from five lakes and one recently dried lake bed. Short cores (0.2 to 0.5m), covering approximately the last two hundred years, were taken from all the lakes. Additionally, long sequences were obtained from one of the lakes and from the dried lake bed, the latter sequence extending back to the last glacial maximum as indicated by thick clay at the base. Each of the lakes are small-medium sized and are open systems situated at 300-1000m above sea level. The shorter cores comprise predominantly clastic gyttja but show a number of distinct changes in colour and chemical composition that suggest major environmental changes over the period of sediment accumulation. This is also reflected in variations in the loss on ignition of samples from the cores and in elemental profiles produced by scanning the cores with the Itrax micro-XRF corescanner at 200μm resolution. The long sequence from the dried lake bed has very low organic content glacial clay at the base, interpreted as last glacial maximum basal clay following determination in the field that this layer exceeded 2m in thickness. Similar sediments occur within a stratigraphically discrete section of approximately 14cm and may relate to a stadial event. The latter section also shows a drop in organic content and appears to be glacial clay incorporating some coarse sandy components indicative of detrital input from the catchment. The second long sequence, from a carbonate lake, includes two mineral layers indicating increased detrital input from the catchment. The deeper and thicker of these layers appears similar to the 14cm layer in the first long sequence, while the upper layer comprises a fine grain size indicative of rock flour and hence also of glacial activity in the catchment. Variation of elemental composition of these ‘glacial' layers is also clear from the Itrax data. It therefore appears that there have been significant reglaciation events in the catchment since the last glacial maximum. Many cores contain tephra layers, identified both visually and from the Itrax scans. Some of these have been confirmed as volcanic ash from the 1991 eruption of Mt Hudson, which at 45°54'S, 72°58'W is the southern-most volcano in the Chilean Andes and only 140km from the study area. Further work is underway to confirm and identify the source and age of other suspected tephra layers. Sediment accumulation rates in the upper parts of the cores are of the order of 1mm/yr (as determined by lead-210, caesium-137 dating and the 1991 Hudson tephra). Given XRF scan resolutions of up to 200μm there is thus the potential for investigation of sub-annual variability. Funding has been obtained to determine carbon-14 dates for the lower parts of the longer cores. The reproducibility and accuracy of the Itrax data has been validated using conventional WD-XRF spectrometry and the work presented will also include geochemical interpretation of the XRF data and comparison with recorded and proxy-inferred climate data for the region.

Growth of Iron(III)-Reducing Bacteria on Clay Minerals as the Sole Electron Acceptor and Comparison of Growth Yields on a Variety of Oxidized Iron Forms†

PubMed Central

Kostka, Joel E.; Dalton, Dava D.; Skelton, Hayley; Dollhopf, Sherry; Stucki, Joseph W.

2002-01-01

Smectite clay minerals are abundant in soils and sediments worldwide and are typically rich in Fe. While recent investigations have shown that the structural Fe(III) bound in clay minerals is reduced by microorganisms, previous studies have not tested growth with clay minerals as the sole electron acceptor. Here we have demonstrated that a pure culture of Shewanella oneidensis strain MR-1 as well as enrichment cultures of Fe(III)-reducing bacteria from rice paddy soil and subsurface sediments are capable of conserving energy for growth with the structural Fe(III) bound in smectite clay as the sole electron acceptor. Pure cultures of S. oneidensis were used for more detailed growth rate and yield experiments on various solid- and soluble-phase electron acceptors [smectite, Fe(III) oxyhydroxide FeOOH, Fe(III) citrate, and oxygen] in the same minimal medium. Growth was assessed as direct cell counts or as an increase in cell carbon (measured as particulate organic carbon). Cell counts showed that similar growth of S. oneidensis (108 cells ml−1) occurred with smectitic Fe(III) and on other Fe forms [amorphous Fe(III) oxyhydroxide, and Fe citrate] or oxygen as the electron acceptor. In contrast, cell yields of S. oneidensis measured as the increase in cell carbon were similar on all Fe forms tested while yields on oxygen were five times higher, in agreement with thermodynamic predictions. Over a range of particle loadings (0.5 to 4 g liter−1), the increase in cell number was highly correlated to the amount of structural Fe in smectite reduced. From phylogenetic analysis of the complete 16S rRNA gene sequences, a predominance of clones retrieved from the clay mineral-reducing enrichment cultures were most closely related to the low-G+C gram-positive members of the Bacteria (Clostridium and Desulfitobacterium) and the δ-Proteobacteria (members of the Geobacteraceae). Results indicate that growth with smectitic Fe(III) is similar in magnitude to that with Fe(III) oxide minerals and is dependent upon the mineral surface area available. Iron(III) bound in clay minerals should be considered an important electron acceptor supporting the growth of bacteria in soils or sedimentary environments. PMID:12450850

Multi-targeted priming for genome-wide gene expression assays.

PubMed

Adomas, Aleksandra B; Lopez-Giraldez, Francesc; Clark, Travis A; Wang, Zheng; Townsend, Jeffrey P

2010-08-17

Complementary approaches to assaying global gene expression are needed to assess gene expression in regions that are poorly assayed by current methodologies. A key component of nearly all gene expression assays is the reverse transcription of transcribed sequences that has traditionally been performed by priming the poly-A tails on many of the transcribed genes in eukaryotes with oligo-dT, or by priming RNA indiscriminately with random hexamers. We designed an algorithm to find common sequence motifs that were present within most protein-coding genes of Saccharomyces cerevisiae and of Neurospora crassa, but that were not present within their ribosomal RNA or transfer RNA genes. We then experimentally tested whether degenerately priming these motifs with multi-targeted primers improved the accuracy and completeness of transcriptomic assays. We discovered two multi-targeted primers that would prime a preponderance of genes in the genomes of Saccharomyces cerevisiae and Neurospora crassa while avoiding priming ribosomal RNA or transfer RNA. Examining the response of Saccharomyces cerevisiae to nitrogen deficiency and profiling Neurospora crassa early sexual development, we demonstrated that using multi-targeted primers in reverse transcription led to superior performance of microarray profiling and next-generation RNA tag sequencing. Priming with multi-targeted primers in addition to oligo-dT resulted in higher sensitivity, a larger number of well-measured genes and greater power to detect differences in gene expression. Our results provide the most complete and detailed expression profiles of the yeast nitrogen starvation response and N. crassa early sexual development to date. Furthermore, our multi-targeting priming methodology for genome-wide gene expression assays provides selective targeting of multiple sequences and counter-selection against undesirable sequences, facilitating a more complete and precise assay of the transcribed sequences within the genome.

Composition, Alteration, and Texture of Fault-Related Rocks from Safod Core and Surface Outcrop Analogs: Evidence for Deformation Processes and Fluid-Rock Interactions

NASA Astrophysics Data System (ADS)

Bradbury, Kelly K.; Davis, Colter R.; Shervais, John W.; Janecke, Susanne U.; Evans, James P.

2015-05-01

We examine the fine-scale variations in mineralogical composition, geochemical alteration, and texture of the fault-related rocks from the Phase 3 whole-rock core sampled between 3,187.4 and 3,301.4 m measured depth within the San Andreas Fault Observatory at Depth (SAFOD) borehole near Parkfield, California. This work provides insight into the physical and chemical properties, structural architecture, and fluid-rock interactions associated with the actively deforming traces of the San Andreas Fault zone at depth. Exhumed outcrops within the SAF system comprised of serpentinite-bearing protolith are examined for comparison at San Simeon, Goat Rock State Park, and Nelson Creek, California. In the Phase 3 SAFOD drillcore samples, the fault-related rocks consist of multiple juxtaposed lenses of sheared, foliated siltstone and shale with block-in-matrix fabric, black cataclasite to ultracataclasite, and sheared serpentinite-bearing, finely foliated fault gouge. Meters-wide zones of sheared rock and fault gouge correlate to the sites of active borehole casing deformation and are characterized by scaly clay fabric with multiple discrete slip surfaces or anastomosing shear zones that surround conglobulated or rounded clasts of compacted clay and/or serpentinite. The fine gouge matrix is composed of Mg-rich clays and serpentine minerals (saponite ± palygorskite, and lizardite ± chrysotile). Whole-rock geochemistry data show increases in Fe-, Mg-, Ni-, and Cr-oxides and hydroxides, Fe-sulfides, and C-rich material, with a total organic content of >1 % locally in the fault-related rocks. The faults sampled in the field are composed of meters-thick zones of cohesive to non-cohesive, serpentinite-bearing foliated clay gouge and black fine-grained fault rock derived from sheared Franciscan Formation or serpentinized Coast Range Ophiolite. X-ray diffraction of outcrop samples shows that the foliated clay gouge is composed primarily of saponite and serpentinite, with localized increases in Ni- and Cr-oxides and C-rich material over several meters. Mesoscopic and microscopic textures and deformation mechanisms interpreted from the outcrop sites are remarkably similar to those observed in the SAFOD core. Micro-scale to meso-scale fabrics observed in the SAFOD core exhibit textural characteristics that are common in deformed serpentinites and are often attributed to aseismic deformation with episodic seismic slip. The mineralogy and whole-rock geochemistry results indicate that the fault zone experienced transient fluid-rock interactions with fluids of varying chemical composition, including evidence for highly reducing, hydrocarbon-bearing fluids.

Direct evidence for organic carbon preservation as clay-organic nanocomposites in a Devonian black shale; from deposition to diagenesis

NASA Astrophysics Data System (ADS)

Kennedy, Martin John; Löhr, Stefan Carlos; Fraser, Samuel Alex; Baruch, Elizabeth Teresa

2014-02-01

The burial of marine sourced organic carbon (OC) in continental margin sediments is most commonly linked to oceanographic regulation of bottom-water oxygenation (anoxia) and/or biological productivity. Here we show an additional influence in the Devonian Woodford Shale, in which OC occurs as nanometer intercalations with specific phyllosilicate minerals (mixed-layer illite/smectite) that we term organo-mineral nanocomposites. High resolution transmission electron microscopic (HRTEM) images provide direct evidence of this nano-scale relationship. While discrete micron-scale organic particles, such as Tasmanites algal cysts, are present in some lamina, a strong relation between total organic carbon (TOC) and mineral surface area (MSA) over a range of 15% TOC indicate that the dominant association of organic carbon is with mineral surfaces and not as discrete pelagic grains, consistent with HRTEM images of nanocomposites. Where periods of oxygenation are indicated by bioturbation, this relationship is modified by a shift to lower OC loading on mineral surfaces and reduced MSA variability likely resulting from biological mixing and homogenization of the sediment, oxidative burn down of OC and/or stripping of OC from minerals in animal guts. The TOC-MSA relationship extends across a range of burial depths and thermal maturities into the oil window and persists through partial illitization. Where illitization occurs, the loss of mineral surface area associated with the collapse of smectite interlayer space results in a systematic increase in TOC:MSA and reorganization of organic carbon and clays into nano-scale aggregates. While the Woodford Shale is representative of black shale deposits commonly thought to record heightened marine productivity and/or anoxia, our results point to the importance of high surface area clay minerals for OC enrichment. Given that the vast majority of these clay minerals are formed in soils before being transported to continental margin settings, their mineralogy and attendant preservative potential is primarily a function of continental climate and provenance making these deposits a sensitive recorder of land as well as oceanographic change.

Investigation of a playa lake bed using geophysical electrical methods

NASA Astrophysics Data System (ADS)

Herrmenn, M.; Gurrola, H.; William, R.; Montalvo, R.; Horton, S.; Homberg, J.; Allen, T.; Bribiesca, E.; Lindsey, C.; Anderson, H.; Seshadri, S.; Manns, S.; Hassan, A.; Loren, C.

2005-12-01

The 2005 undergraduate applied geophysical class of Texas Tech University conducted a geophysical survey of a playa lake approximately 10 miles northwest of Lubbock Texas. The playa lake is primarily used as grazing land for two llamas and a hand full of sheep, and has been recently used as a dump for broken down sheds and barrels. Our goal was to model the subsurface of the transition from the playa to plains geology and investigate the possible contamination, of the soil and the data, by the metal dumped at the surface. We conducted our survey with and EM31 and homemade D.C. resistivity and SP equipment that allowed students to grasp the theories more clearly. SP readings were collected using clay pots constructed from terracotta pots and copper tubing purchased at the local hardware store and voltage measurements collected with handle held multi-meters. D.C. resistivity data were collected in a dipole-dipole array using 20 nine volt batteries connected in series with a large enough variable resistor and amp meter to regulate steady current flow. A multi meter was used to collect voltage readings. Wenner array data were collected using a home-made multi-filament cable connected switch box to allow a central user to regulate current and take voltage reading. A map of conductivity produced from a 10 m of EM31 reading show that conductivity anomalies mirror topography. The SP profiles show high values in the playa lake that drop off as we move from the clay rich lake bed to normal grassland. Analysis of both the Dipole-Dipole and Wenner array data support a model with 3 flat layers increasing in resistivity with depth. It appears that these remain flat passing beneath the playa and the playa is eroded into these layers.

Solar System Chaos and its climatic and biogeochemical consequences

NASA Astrophysics Data System (ADS)

Ikeda, M.; Tada, R.; Ozaki, K.; Olsen, P. E.

2017-12-01

Insolation changes caused by changes in Earth's orbital parameters are the main driver of climatic variations, whose pace has been used for astronomically-calibrated geologic time scales of high accuracy to understand Earth system dynamics. However, the astrophysical models beyond several tens of million years ago have large uncertainty due to chaotic behavior of the Solar System, and its impact on amplitude modulation of multi-Myr-scale orbital variations and consequent climate changes has become the subject of debate. Here we show the geologic constraints on the past chaotic behavior of orbital cycles from early Mesozoic monsoon-related records; the 30-Myr-long lake level records of the lacustrine sequence in Newark-Hartford basins (North America) and 70-Myr-long biogenic silica (BSi) burial flux record of pelagic deep-sea chert sequence in Inuyama area (Japan). BSi burial flux of chert could be considered as proportional to the dissolved Si (DSi) input from chemical weathering on timescales longer than the residence time of DSi ( 100 kyr), because chert could represent a major sink for oceanic dissolved silica (Ikeda et al., 2017).These geologic records show multi-Myr cycles with similar frequency modulations of eccentricity solution of astronomical model La2010d (Laskar et al., 2011) compared with other astronomical solutions, but not exactly same. Our geologic records provide convincing evidence for the past chaotic dynamical behaviour of the Solar System and new and challenging additional constraints for astrophysical models. In addition, we find that ˜10 Myr cycle detected in monsoon proxies and their amplitude modulation of ˜2 Myr cycle may be related to the amplitude modulation of ˜2 Myr eccentricity cycle through non-linear process(es) of Earth system dynamics, suggesting possible impact of the chaotic behavior of Solar planets on climate change. Further impact of multi-Myr orbital cycles on global biogeochemical cycles will be discussed.

Spatial and vertical distribution of bacterial community in the northern South China Sea.

PubMed

Sun, Fu-Lin; Wang, You-Shao; Wu, Mei-Lin; Sun, Cui-Ci; Cheng, Hao

2015-10-01

Microbial communities are highly diverse in coastal oceans and response rapidly with changing environments. Learning about this will help us understand the ecology of microbial populations in marine ecosystems. This study aimed to assess the spatial and vertical distributions of the bacterial community in the northern South China Sea. Multi-dimensional scaling analyses revealed structural differences of the bacterial community among sampling sites and vertical depth. Result also indicated that bacterial community in most sites had higher diversity in 0-75 m depths than those in 100-200 m depths. Bacterial community of samples was positively correlation with salinity and depth, whereas was negatively correlation with temperature. Proteobacteria and Cyanobacteria were the dominant groups, which accounted for the majority of sequences. The α-Proteobacteria was highly diverse, and sequences belonged to Rhodobacterales bacteria were dominant in all characterized sequences. The current data indicate that the Rhodobacterales bacteria, especially Roseobacter clade are the diverse group in the tropical waters.

Single Image Super-Resolution Based on Multi-Scale Competitive Convolutional Neural Network

PubMed Central

Qu, Xiaobo; He, Yifan

2018-01-01

Deep convolutional neural networks (CNNs) are successful in single-image super-resolution. Traditional CNNs are limited to exploit multi-scale contextual information for image reconstruction due to the fixed convolutional kernel in their building modules. To restore various scales of image details, we enhance the multi-scale inference capability of CNNs by introducing competition among multi-scale convolutional filters, and build up a shallow network under limited computational resources. The proposed network has the following two advantages: (1) the multi-scale convolutional kernel provides the multi-context for image super-resolution, and (2) the maximum competitive strategy adaptively chooses the optimal scale of information for image reconstruction. Our experimental results on image super-resolution show that the performance of the proposed network outperforms the state-of-the-art methods. PMID:29509666

Single Image Super-Resolution Based on Multi-Scale Competitive Convolutional Neural Network.

PubMed

Du, Xiaofeng; Qu, Xiaobo; He, Yifan; Guo, Di

2018-03-06

Deep convolutional neural networks (CNNs) are successful in single-image super-resolution. Traditional CNNs are limited to exploit multi-scale contextual information for image reconstruction due to the fixed convolutional kernel in their building modules. To restore various scales of image details, we enhance the multi-scale inference capability of CNNs by introducing competition among multi-scale convolutional filters, and build up a shallow network under limited computational resources. The proposed network has the following two advantages: (1) the multi-scale convolutional kernel provides the multi-context for image super-resolution, and (2) the maximum competitive strategy adaptively chooses the optimal scale of information for image reconstruction. Our experimental results on image super-resolution show that the performance of the proposed network outperforms the state-of-the-art methods.

A New Perspective on Polyploid Fragaria (Strawberry) Genome Composition Based on Large-Scale, Multi-Locus Phylogenetic Analysis.

PubMed

Yang, Yilong; Davis, Thomas M

2017-12-01

The subgenomic compositions of the octoploid (2n = 8× = 56) strawberry (Fragaria) species, including the economically important cultivated species Fragaria x ananassa, have been a topic of long-standing interest. Phylogenomic approaches utilizing next-generation sequencing technologies offer a new window into species relationships and the subgenomic compositions of polyploids. We have conducted a large-scale phylogenetic analysis of Fragaria (strawberry) species using the Fluidigm Access Array system and 454 sequencing platform. About 24 single-copy or low-copy nuclear genes distributed across the genome were amplified and sequenced from 96 genomic DNA samples representing 16 Fragaria species from diploid (2×) to decaploid (10×), including the most extensive sampling of octoploid taxa yet reported. Individual gene trees were constructed by different tree-building methods. Mosaic genomic structures of diploid Fragaria species consisting of sequences at different phylogenetic positions were observed. Our findings support the presence in octoploid species of genetic signatures from at least five diploid ancestors (F. vesca, F. iinumae, F. bucharica, F. viridis, and at least one additional allele contributor of unknown identity), and questions the extent to which distinct subgenomes are preserved over evolutionary time in the allopolyploid Fragaria species. In addition, our data support divergence between the two wild octoploid species, F. virginiana and F. chiloensis. © The Author 2017. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

Utilization of Herbicide Concentration/Exposure Time Relationships for Controlling Submersed Invasive Plants on Lake Gaston, Virginia/North Carolina

DTIC Science & Technology

2011-06-01

of efficacy in controlling invasive plant species, and are verified in aquatic and wetland field sites throughout the US. This multi-tiered...localized treatment sites, moving or still water. Chlorosis of stems and leaves with plant death in 7-10 days. 2,4-D 3 DMA liquid, BEE salt...with Eurasian watermilfoil. Formulations include a liquid dimethyl amine (DMA) and a granular clay butoxyethanol ester ( BEE ). Current Evaluations

Learning Behavior Characterization with Multi-Feature, Hierarchical Activity Sequences

ERIC Educational Resources Information Center

Ye, Cheng; Segedy, James R.; Kinnebrew, John S.; Biswas, Gautam

2015-01-01

This paper discusses Multi-Feature Hierarchical Sequential Pattern Mining, MFH-SPAM, a novel algorithm that efficiently extracts patterns from students' learning activity sequences. This algorithm extends an existing sequential pattern mining algorithm by dynamically selecting the level of specificity for hierarchically-defined features…

The geomorphological evidences of subsidence in the Nile Delta: Analysis of high resolution topographic DEM and multi-temporal satellite images

NASA Astrophysics Data System (ADS)

El Bastawesy, M.; Cherif, O. H.; Sultan, M.

2017-12-01

This paper investigates the relevance of landforms to the subsidence of the Nile Delta using a high resolution topographic digital elevation model (DEM) and sets of multi-temporal Landsat satellite images. 195 topographic map sheets produced in 1946 at 1:25,000 scale were digitized, and the DEM was interpolated. The undertaken processing techniques have distinguished all the natural low-lying closed depressions from the artificial errors induced by the interpolation of the DEM. The local subsidence of these depressions from their surroundings reaches a maximum depth of 2.5 m. The regional subsidence of the Nile Delta has developed inverted topography, where the tracts occupied by the contemporary distributary channels are standing at higher elevations than the areas in between. This inversion could be related to the differences in the hydrological and sedimentological properties of underlying sediments, as the channels are underlain by water-saturated sands while the successions of clay and silt on flood plains are prone to compaction. Furthermore, the analysis of remote sensing and topographic data clearly show significant changes in the land cover and land use, particularly in the northern lagoons and adjacent sabkhas, which are dominated by numerous low subsiding depressions. The areas covered by water logging and ponds are increasing on the expense of agricultural areas, and aquaculture have been practiced instead. The precise estimation of subsidence rates and distribution should be worked out to evaluate probable changes in land cover and land use.

Re-injection feasibility study of fracturing flow-back fluid in shale gas mining

NASA Astrophysics Data System (ADS)

Kang, Dingyu; Xue, Chen; Chen, Xinjian; Du, Jiajia; Shi, Shengwei; Qu, Chengtun; Yu, Tao

2018-02-01

Fracturing flow-back fluid in shale gas mining is usually treated by re-injecting into formation. After treatment, the fracturing flow-back fluid is injected back into the formation. In order to ensure that it will not cause too much damage to the bottom layer, feasibility evaluations of re-injection of two kinds of fracturing fluid with different salinity were researched. The experimental research of the compatibility of mixed water samples based on the static simulation method was conducted. Through the analysis of ion concentration, the amount of scale buildup and clay swelling rate, the feasibility of re-injection of different fracturing fluid were studied. The result shows that the swelling of the clay expansion rate of treated fracturing fluid is lower than the mixed water of treated fracturing fluid and the distilled water, indicating that in terms of clay expansion rate, the treated fracturing flow-back fluid is better than that of water injection after re-injection. In the compatibility test, the maximum amount of fouling in the Yangzhou oilfield is 12mg/L, and the maximum value of calcium loss rate is 1.47%, indicating that the compatibility is good. For the fracturing fluid with high salinity in the Yanchang oilfield, the maximum amount of scaling is 72mg/L, and the maximum calcium loss rate is 3.50%, indicating that the compatibility is better.

Landing Characteristics of the Apollo Spacecraft with Deployed Heat Shield Impact Attenuation Systems

NASA Technical Reports Server (NTRS)

Stubbs, Sandy M.

1965-01-01

An experimental investigation was made to determine the landing characteristics of a 1/4-scale dynamic model of the Apollo spacecraft command module using two different active (heat shield deployed prior to landing) landing systems for impact attenuation. One landing system (configuration 1) consisted of six hydraulic struts and eight crushable honeycomb struts. The other landing system (configuration 2), consisted of four hydraulic struts and six strain straps. Tests made on water and the hard clay-gravel composite landing surfaces simulated parachute letdown (vertical) velocities of 23 ft/sec (7.0 m/s) (full scale). Landings made on the sand landing surface simulated vertical velocities of 30 ft/sec (9.1 m/s). Horizontal velocities of from 0 to 50 ft/sec (15 m/s) were simulated. Landing attitudes ranged from -30'degrees to 20 degrees, and the roll attitudes were O degrees, 90 degrees, and 180 degrees. For configuration 1, maximum normal accelerations at the vehicle center of gravity for landings on water, sand, and the hard clay-gravel composite surface were 9g, 20g, and 18g, respectively. The maximum normal center-of-gravity acceleration for configuration 2 which was landed only on the hard clay-gravel landing surface was approximately 19g. Accelerations for configuration 2 were generally equal to or lower than accelerations for configuration 1 and normal.

Measurement of kT splitting scales in W→ℓν events at [Formula: see text] with the ATLAS detector.

PubMed

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Sinervo, P; Sinev, N B; Sipica, V; Siragusa, G; Sircar, A; Sisakyan, A N; Sivoklokov, S Yu; Sjölin, J; Sjursen, T B; Skinnari, L A; Skottowe, H P; Skovpen, K; Skubic, P; Slater, M; Slavicek, T; Sliwa, K; Smakhtin, V; Smart, B H; Smestad, L; Smirnov, S Yu; Smirnov, Y; Smirnova, L N; Smirnova, O; Smith, B C; Smith, K M; Smizanska, M; Smolek, K; Snesarev, A A; Snidero, G; Snow, S W; Snow, J; Snyder, S; Sobie, R; Sodomka, J; Soffer, A; Soh, D A; Solans, C A; Solar, M; Solc, J; Soldatov, E Yu; Soldevila, U; Solfaroli Camillocci, E; Solodkov, A A; Solovyanov, O V; Solovyev, V; Soni, N; Sood, A; Sopko, V; Sopko, B; Sosebee, M; Soualah, R; Soueid, P; Soukharev, A; South, D; Spagnolo, S; Spanò, F; Spighi, R; Spigo, G; Spiwoks, R; Spousta, M; Spreitzer, T; Spurlock, B; St Denis, R D; Stahlman, J; Stamen, R; Stanecka, E; Stanek, R W; Stanescu, C; Stanescu-Bellu, M; Stanitzki, M M; Stapnes, S; Starchenko, E A; Stark, J; Staroba, P; Starovoitov, P; Staszewski, R; Staude, A; Stavina, P; Steele, G; Steinbach, P; Steinberg, P; Stekl, I; Stelzer, B; Stelzer, H J; Stelzer-Chilton, O; Stenzel, H; Stern, S; Stewart, G A; Stillings, J A; Stockton, M C; Stoebe, M; Stoerig, K; Stoicea, G; Stonjek, S; Strachota, P; Stradling, A R; Straessner, A; Strandberg, J; Strandberg, S; Strandlie, A; Strang, M; Strauss, E; Strauss, M; Strizenec, P; Ströhmer, R; Strom, D M; Strong, J A; Stroynowski, R; Stugu, B; Stumer, I; Stupak, J; Sturm, P; Styles, N A; Su, D; Subramania, Hs; Subramaniam, R; Succurro, A; Sugaya, Y; Suhr, C; Suk, M; Sulin, V V; Sultansoy, S; Sumida, T; Sun, X; Sundermann, J E; Suruliz, K; Susinno, G; Sutton, M R; Suzuki, Y; Suzuki, Y; Svatos, M; Swedish, S; Swiatlowski, M; Sykora, I; Sykora, T; Ta, D; Tackmann, K; Taffard, A; Tafirout, R; Taiblum, N; Takahashi, Y; Takai, H; Takashima, R; Takeda, H; Takeshita, T; Takubo, Y; Talby, M; Talyshev, A; Tam, J Y C; Tamsett, M C; Tan, K G; Tanaka, J; Tanaka, R; Tanaka, S; Tanaka, S; Tanasijczuk, A J; Tani, K; Tannoury, N; Tapprogge, S; Tardif, D; Tarem, S; Tarrade, F; Tartarelli, G F; Tas, P; Tasevsky, M; Tassi, E; Tayalati, Y; Taylor, C; Taylor, F E; Taylor, G N; Taylor, W; Teinturier, M; Teischinger, F A; Teixeira Dias Castanheira, M; Teixeira-Dias, P; Temming, K K; Ten Kate, H; Teng, P K; Terada, S; Terashi, K; Terron, J; Testa, M; Teuscher, R J; Therhaag, J; Theveneaux-Pelzer, T; Thoma, S; Thomas, J P; Thompson, E N; Thompson, P D; Thompson, P D; Thompson, A S; Thomsen, L A; Thomson, E; Thomson, M; Thong, W M; Thun, R P; Tian, F; Tibbetts, M J; Tic, T; Tikhomirov, V O; Tikhonov, Y A; Timoshenko, S; Tiouchichine, E; Tipton, P; Tisserant, S; Todorov, T; Todorova-Nova, S; Toggerson, B; Tojo, J; Tokár, S; Tokushuku, K; Tollefson, K; Tomlinson, L; Tomoto, M; Tompkins, L; Toms, K; Tonoyan, A; Topfel, C; Topilin, N D; Torrence, E; Torres, H; Torró Pastor, E; Toth, J; Touchard, F; Tovey, D R; Tran, H L; Trefzger, T; Tremblet, L; Tricoli, A; Trigger, I M; Trincaz-Duvoid, S; Tripiana, M F; Triplett, N; Trischuk, W; Trocmé, B; Troncon, C; Trottier-McDonald, M; Trovatelli, M; True, P; Trzebinski, M; Trzupek, A; Tsarouchas, C; Tseng, J C-L; Tsiakiris, M; Tsiareshka, P V; Tsionou, D; Tsipolitis, G; Tsiskaridze, S; Tsiskaridze, V; Tskhadadze, E G; Tsukerman, I I; Tsulaia, V; Tsung, J-W; Tsuno, S; Tsybychev, D; Tua, A; Tudorache, A; Tudorache, V; Tuggle, J M; Turala, M; Turecek, D; Turk Cakir, I; Turra, R; Tuts, P M; Tykhonov, A; Tylmad, M; Tyndel, M; Tzanakos, G; Uchida, K; Ueda, I; Ueno, R; Ughetto, M; Ugland, M; Uhlenbrock, M; Ukegawa, F; Unal, G; Undrus, A; Unel, G; Ungaro, F C; Unno, Y; Urbaniec, D; Urquijo, P; Usai, G; Vacavant, L; Vacek, V; Vachon, B; Vahsen, S; Valencic, N; Valentinetti, S; Valero, A; Valery, L; Valkar, S; Valladolid Gallego, E; Vallecorsa, S; Valls Ferrer, J A; Van Berg, R; Van Der Deijl, P C; van der Geer, R; van der Graaf, H; Van Der Leeuw, R; van der Poel, E; van der Ster, D; van Eldik, N; van Gemmeren, P; Van Nieuwkoop, J; van Vulpen, I; Vanadia, M; Vandelli, W; Vaniachine, A; Vankov, P; Vannucci, F; Vari, R; Varnes, E W; 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Ziolkowski, M; Zitoun, R; Živković, L; Zmouchko, V V; Zobernig, G; Zoccoli, A; Zur Nedden, M; Zutshi, V; Zwalinski, L

A measurement of splitting scales, as defined by the k T clustering algorithm, is presented for final states containing a W boson produced in proton-proton collisions at a centre-of-mass energy of 7 TeV. The measurement is based on the full 2010 data sample corresponding to an integrated luminosity of 36 pb -1 which was collected using the ATLAS detector at the CERN Large Hadron Collider. Cluster splitting scales are measured in events containing W bosons decaying to electrons or muons. The measurement comprises the four hardest splitting scales in a k T cluster sequence of the hadronic activity accompanying the W boson, and ratios of these splitting scales. Backgrounds such as multi-jet and top-quark-pair production are subtracted and the results are corrected for detector effects. Predictions from various Monte Carlo event generators at particle level are compared to the data. Overall, reasonable agreement is found with all generators, but larger deviations between the predictions and the data are evident in the soft regions of the splitting scales.

Monitoring water content in Opalinus Clay within the FE-Experiment: Test application of dielectric water content sensors

NASA Astrophysics Data System (ADS)

Sakaki, T.; Vogt, T.; Komatsu, M.; Müller, H. R.

2013-12-01

The spatiotemporal variation of water content in the near field rock around repository tunnels for radioactive waste in clay formations is one of the essential quantities to be monitored for safety assessment in many waste disposal programs. Reliable measurements of water content are important not only for the understanding and prediction of coupled hydraulic-mechanic processes that occur during tunnel construction and ventilation phase, but also for the understanding of coupled thermal-hydraulic-mechanical (THM) processes that take place in the host rock during the post closure phase of a repository tunnel for spent fuel and high level radioactive waste (SF/HLW). The host rock of the Swiss disposal concept for SF/HLW is the Opalinus Clay formation (age of approx. 175 Million years). To better understand the THM effects in a full-scale heater-engineered barrier-rock system in Opalinus Clay, a full-scale heater test, namely the Full-Scale Emplacement (FE) experiment, was initiated in 2010 at the Mont Terri underground rock laboratory in north-western Switzerland. The experiment is designed to simulate the THM evolution of a SF/HLW repository tunnel based on the Swiss disposal concept in a realistic manner during the construction, emplacement, backfilling, and post-closure phases. The entire experiment implementation (in a 50 m long gallery with approx. 3 m diameter) as well as the post-closure THM evolution will be monitored using a network of several hundred sensors. The sensors will be distributed in the host rock, the tunnel lining, the engineered barrier, which consists of bentonite pellets and blocks, and on the heaters. The excavation is completed and the tunnel is currently being ventilated. Measuring water content in partially saturated clay-rich high-salinity rock with a deformable grain skeleton is challenging. Therefore, we use the ventilation phase (before backfilling and heating) to examine the applicability of commercial water content sensors and to design custom-made TDR sensors. The focus of this study is mainly on dielectric-based commercial water content sensors. Unlike soils for which the sensors were originally designed, it requires significantly more attention to properly install it onto rock (i.e., a good contact with the sensor and rock). The results will be used to select and design the instrumentation set-up for monitoring water content during the heating phase where sensors have to withstand harsh conditions (high salinity, high temperature, high pressures, high clay content and long term monitoring up to 10 years). The sensor tests are beneficial also in the sense that the water content data generated during these tests provide insights into drainage processes after tunnel construction and seasonal water content variations in the near field rock around the test gallery. We will present results from the tests and measurements performed during the first year.

Understanding fluid transport through the multiscale pore network of a natural shale

NASA Astrophysics Data System (ADS)

Davy, Catherine; Adler, Pierre; Song, Yang; Nguyen, Thang Kim; Troadec, David; Dhénin, Jean-Francois

2017-04-01

Natural shales have a complex pore structure, which is only partly understood today. In the present contribution, a combination of different techniques is used to get information on three different scales. On each scale, the relevant flow equation is solved and provides input for the flow equation of the next higher scale. More precisely, micro-CT, FIB/SEM (Focused Ion Beam/Scanning Electron Microscopy) and TEM (Transmission Electron Microscopy) provide a full representative 3D pore space on the macroscopic scale, the mesoscale and the nanoscale. The corresponding typical voxel sizes are 0.7 μm, 10 nm and 1 nm, respectively. The porosity on the micro-CT images is 0.5 %, and it is not connected. One can distinguish between the pores, the porous clay matrix and non porous minerals; the volume percentages of these last two phases are 0.6 and 0.395, respectively. Samples of the porous clay matrix were analyzed by FIB/SEM which yields 3D information. They have a porosity ranging from 2 to 6 %. In some of them, the pore space is connected. Finally, TEM provides 2D images with a porosity of about 10 to 25 %. These information were used in the following way to estimate the macroscopic permeability which has been measured independently and found equal to 6 x10-20 m2. At the nanoscopic scale analyzed by 2D TEM, in the absence of 3D images, the pore structure is reconstructed by using a technique based on truncated Gaussian fields. Then, the Stokes equations are solved by using a 3D Lattice Boltzmann method. The resulting velocity field is averaged and this provides the permeability K_n. The permeability of the nanoscale structure varies between 0.7x 10-20 and 1.8x10-19 m2. As expected, the material is anisotropic. At the mesoscale, percolation of the FIB/SEM pore volume occurs only along a single direction. The Stokes equations are again solved by the same method and the mesoscopic permeability Km varies between 3.3 10-20 and 1.20 10-18 m2, depending on the nature of the percolating volume. The influence of the nanoscale porosity on the mesoscopic permeability is also studied. Two examples show that despite the scale ratio between the mesoscopic and nanoscopic pores, the nanoscopic pore structure cannot be neglected to estimate the permeability of the pore clay matrix. Finally, the sample provided by micro-CT is considered as a porous medium composed of three phases with permeabilities 0 (for the non porous minerals), 1 (for the porous clay matrix) and infinity (for the macroscopic pores). The overall permeability Kmacro is obtained by solving the Darcy's equation with a variable local permeability with spatially periodic boundary conditions. Kmacro is found of the order of 0.4 and the medium is relatively isotropic on this scale. This estimation of Kmacro is in agreement with the measured value.

Criteria for the recognition and correlation of sandstone units in the Precambrian and Paleozoic-Mesozoic clastic sequence in the near east

NASA Astrophysics Data System (ADS)

Weissbrod, T.; Perath, I.

A systematic study of the Precambrian and Paleozoic-Mesozoic clastic sequences (Nubian Sandstone) in Israel and Sinai, and a comparative analysis of its stratigraphy in neighbouring countries, has shown that besides the conventional criteria of subdivision (lithology, field appearance, photogeological features, fossil content), additional criteria can be applied, which singly or in mutual conjuction enable the recognition of widespread units and boundaries. These criteria show lateral constancy, and recurrence of a similar vertical sequence over great distances, and are therefore acceptable for the identification of synchronous, region-wide sedimentary units (and consequently, major unconformities). They also enable, once the units are established, to identify detached (not in situ) samples, samples from isolated or discontinous outcrops, borehole material or archive material. The following rock properties were tested and found to be usefuls in stratigraphic interpretation, throughout large distribution areas of the clastic sequence: Landscape, which is basically the response of a particular textural-chemic al aggregate to atmospheric weathering. Characteristic outcrop feature — styles of roundness or massivity, fissuring or fliatin, slope profile, bedding — express a basic uniformity of these platform-type clastics. Colors are often stratigraphically constant over hundreds of kilometers, through various climates and topographies, and express some intrinsic unity of the rock bodies. Grain size and sorting, when cross-plotted, enable to differentiate existing unit. The method requires the analysis of representative numbers of samples. Vertical trends of median grain size and sorting show reversals, typically across unconformities. Feldstar content diminishes from 15-50% in Precambrian-Paleozoic rocks to a mere 5% or less in Mesozoic sandstones — a distinctive regionwide time trend. Dominance of certain feldstar types characterizes Precambrian and Paleozoic units. Clay minerals, though subordinate, characterize certain units. Illite is usually the dominant clay mineral in the Precambrain-Paleozoic sediments, showing different degress of crystallization in different units. Kaolinite is the main, often the only clay mineral in Mesozoic units. Heavy minerals, whose species spectra reflect on parent rock and provenance terrain and whose differential response to degradation points to the sedimentary history of the deposit, show certain vertical regularities, such as the abrupt disappearance of species or whole assemblages at certain levels, indicating unconformities. Trace metals, which in places reach ore concentrations (e.g. copper), are often extensive, though of well-defined vertical distribution. They express adsorptive capacity of specific widespread lithologies, enabling the discrimination of units. Even though each of these criteria is not always by itself diagnostic, they may in conjuction with one or more other criteria amount to a petrographic fingerprint that enables fairly accurate identification of the age interval of the unit, and its relation both to the regional and the local stratigraphic sequence.

Pedogenic formation of montmorillonite from a 2:1-2:2 intergrade clay mineral

USGS Publications Warehouse

Malcolm, R.L.; Nettleton, W.D.; McCracken, R.J.

1968-01-01

Montmorillonite was found to be the dominant clay mineral in surface horizons of certain soils of the North Carolina Coastal Plain whereas a 2:1-2:2 intergrade clay mineral was dominant in subjacent horizons. In all soils where this clay mineral sequence was found, the surface horizon was low in pH (below 4⋅5) and high in organic matter content. In contrast, data from studies of other soils of this region (Weed and Nelson, 1962) show that: (1) montmorillonite occurs infrequently; (2) maximum accumulation of the 2:1-2:2 intergrade normally occurs in the surface horizon and decreases with depth in the profile; (3) organic matter contents are low; and (4) pH values are only moderately acid (pH 5-6).It is theorized that the montmorillonite in the surface horizon of the soils studied originated by pedogenic weathering of the 2:1-2:2 intergrade clay mineral. The combined effects of low pH (below 4⋅5) and high organic matter content in surface horizons are believed to be the agents responsible for this mineral transformation. The protonation and solubilization (reverse of hydrolysis) of Al-polymers in the interlayer of expansible clay minerals will occur at or below pH 4⋅5 depending on the charge and steric effects of the interlayer. A low pH alone may cause this solubilization and thus mineral transformation, but in the soils studied the organic matter is believed to facilitate and accelerage the transformation. The intermediates of organic matter decomposition provide an acid environment, a source of protons, and a source of watersoluble mobile organic substances (principally fulvic acids) which have the ability to complex the solubilized aluminum and move it down the profile. This continuous removal of solubilized aluminum would provide for a favorable gradient for aluminum solubilization.The drainage class or position in a catena is believed to be less important than the chemical factors in formation of montmorillonite from 2:1-2:2 intergrade, because montmorillonite is present in all drainage classes if the surface horizon is low in pH and high in organic matter.

Technical Report for Proposed Ordnance Clearance at Fort George G. Meade

DTIC Science & Technology

1991-03-01

Potomac Group (including the Patapsco, Arundel Clay, and Patuxent Formations), the Magothy Formation and the Patuxent River terraces and associated...alluvium. The youngest geologic unit in theI stratigraphic sequence underlying Fort Meade is the Magothy Formation of Late Cretaceous age. This formation...Department of the Army, 1981). The Magothy Formation unconformably overlies the sediments of the Lower Cretaceous Potomac Group. i The formations of the

Micropillar Compression Technique Applied to Micron-Scale Mudstone Elasto-Plastic Deformation

NASA Astrophysics Data System (ADS)

Dewers, T. A.; Boyce, B.; Buchheit, T.; Heath, J. E.; Chidsey, T.; Michael, J.

2010-12-01

Mudstone mechanical testing is often limited by poor core recovery and sample size, preservation and preparation issues, which can lead to sampling bias, damage, and time-dependent effects. A micropillar compression technique, originally developed by Uchic et al. 2004, here is applied to elasto-plastic deformation of small volumes of mudstone, in the range of cubic microns. This study examines behavior of the Gothic shale, the basal unit of the Ismay zone of the Pennsylvanian Paradox Formation and potential shale gas play in southeastern Utah, USA. Precision manufacture of micropillars 5 microns in diameter and 10 microns in length are prepared using an ion-milling method. Characterization of samples is carried out using: dual focused ion - scanning electron beam imaging of nano-scaled pores and distribution of matrix clay and quartz, as well as pore-filling organics; laser scanning confocal (LSCM) 3D imaging of natural fractures; and gas permeability, among other techniques. Compression testing of micropillars under load control is performed using two different nanoindenter techniques. Deformation of 0.5 cm in diameter by 1 cm in length cores is carried out and visualized by a microscope loading stage and laser scanning confocal microscopy. Axisymmetric multistage compression testing and multi-stress path testing is carried out using 2.54 cm plugs. Discussion of results addresses size of representative elementary volumes applicable to continuum-scale mudstone deformation, anisotropy, and size-scale plasticity effects. Other issues include fabrication-induced damage, alignment, and influence of substrate. This work is funded by the US Department of Energy, Office of Basic Energy Sciences. Sandia is a multiprogram laboratory operated by Sandia Corporation, a Lockheed Martin Company, for the United States Department of Energy’s National Nuclear Security Administration under contract DE-AC04-94AL85000.

Using new hetero-spectral two-dimensional correlation analyses and synchrotron-radiation-based spectromicroscopy to characterize binding of Cu to soil dissolved organic matter.

PubMed

Sun, Fusheng; Li, Yaqing; Wang, Xiang; Chi, Zhilai; Yu, Guanghui

2017-04-01

Understanding the binding characteristics of copper (Cu) to different functional groups in soil dissolved organic matter (DOM) is important to explore Cu toxicity, bioavailability and ultimate fate in the environment. However, the methods used to explore such binding characteristics are still limited. Here, two-dimensional correlation spectroscopy (2DCOS) integrated with Fourier transform infrared (FTIR), 29 Si nuclear magnetic resonance (NMR), 27 Al NMR, and synchrotron-radiation-based FTIR spectromicroscopy were used to explore the binding characteristics of Cu to soil DOM as part of a long-term (23 years) fertilization experiment. Compared with no fertilization and inorganic fertilization (NPK), long-term pig manure fertilization (M) treatment significantly increased the concentration of total and bioavailable Cu in soils. Furthermore, hetero-spectral 2DCOS analyses demonstrated that the binding characteristics of Cu onto functional groups in soil DOM were modified by fertilization regimes. In the NPK treatment, Cu was bound to aliphatic C, whereas in the manure treatment SiO groups had higher affinity toward Cu than aliphatic C. Also, the sequence of binding of functional groups to Cu was modified by the fertilization treatments. Moreover, synchrotron-radiation-based FTIR spectromicroscopy showed that Cu, clay minerals and sesquioxides, and C functional groups were heterogeneously distributed at the micro-scale. Specifically, clay-OH as well as mineral elements had a distribution pattern similar to Cu, but certain (but not all) C forms showed a distribution pattern inconsistent with that of Cu. The combination of synchrotron radiation spectromicroscopy and 2DCOS is a useful tool in exploring the interactions among heavy metals, minerals and organic components in soils. Copyright © 2017 Elsevier Ltd. All rights reserved.

Micro-scale heterogeneity of soil phosphorus depends on soil substrate and depth

DOE PAGES

Werner, Florian; Mueller, Carsten W.; Thieme, Jurgen; ...

2017-06-09

Soils comprise various heterogeneously distributed pools of lithogenic, free organic, occluded, adsorbed, and precipitated phosphorus (P) forms, which differ depending on soil forming factors. Small-scale heterogeneity of element distributions recently has received increased attention in soil science due to its influence on soil functions and soil fertility. We investigated the micro-scale distribution of total P and different specific P binding forms in aggregates taken from a high-P clay-rich soil and a low-P sandy soil by combining advanced spectrometric and spectroscopic techniques to introduce new insights on P accessibility and availability in soils. Here we show that soil substrate and soilmore » depth determine micro-scale P heterogeneity in soil aggregates. In P-rich areas of all investigated soil aggregates, P was predominantly co-located with aluminium and iron oxides and hydroxides, which are known to strongly adsorb P. Clay minerals were co-located with P only to a lesser extent. In the low-P topsoil aggregate, the majority of the P was bound organically. Aluminium and iron phosphate predominated in the quartz-rich low-P subsoil aggregate. Sorbed and mineral P phases determined P speciation in the high-P top- and subsoil, and apatite was only detected in the high-P subsoil aggregate. Lastly, our results indicate that micro-scale spatial and chemical heterogeneity of P influences P accessibility and bioavailability.« less

Micro-scale heterogeneity of soil phosphorus depends on soil substrate and depth

DOE Office of Scientific and Technical Information (OSTI.GOV)

Werner, Florian; Mueller, Carsten W.; Thieme, Jurgen

Soils comprise various heterogeneously distributed pools of lithogenic, free organic, occluded, adsorbed, and precipitated phosphorus (P) forms, which differ depending on soil forming factors. Small-scale heterogeneity of element distributions recently has received increased attention in soil science due to its influence on soil functions and soil fertility. We investigated the micro-scale distribution of total P and different specific P binding forms in aggregates taken from a high-P clay-rich soil and a low-P sandy soil by combining advanced spectrometric and spectroscopic techniques to introduce new insights on P accessibility and availability in soils. Here we show that soil substrate and soilmore » depth determine micro-scale P heterogeneity in soil aggregates. In P-rich areas of all investigated soil aggregates, P was predominantly co-located with aluminium and iron oxides and hydroxides, which are known to strongly adsorb P. Clay minerals were co-located with P only to a lesser extent. In the low-P topsoil aggregate, the majority of the P was bound organically. Aluminium and iron phosphate predominated in the quartz-rich low-P subsoil aggregate. Sorbed and mineral P phases determined P speciation in the high-P top- and subsoil, and apatite was only detected in the high-P subsoil aggregate. Lastly, our results indicate that micro-scale spatial and chemical heterogeneity of P influences P accessibility and bioavailability.« less

Electric alignment of plate shaped clay aggregates in oils

NASA Astrophysics Data System (ADS)

Castberg, Rene; Rozynek, Zbigniew; Måløy, Knut Jørgen; Flekkøy, Eirik

2016-01-01

We experimentally investigate the rotation of plate shaped aggregates of clay mineral particles immersed in silicone oil. The rotation is induced by an external electric field. The rotation time is measured as a function of the following parameters: electric field strength, the plate geometry (length and width) and the dielectric properties of the plates. We find that the plates always align with their longest axis parallel to the direction of the electric field (E), independently of the arrangement of individual clay -2 mineral particles within the plate. The rotation time is found to scale as E and is proportional to the viscosity (μ), which coincides well with a model that describes orientation of dipoles in electric fields. As the length of the plate is increased we quantify a difference between the longitudinal and transverse polarisability. Finally, we show that moist plates align faster. We attribute this to the change of the dielectric properties of the plate due to the presence of water.

Clay catalyzed RNA synthesis under Martian conditions: Application for Mars return samples.

PubMed

Joshi, Prakash C; Dubey, Krishna; Aldersley, Michael F; Sausville, Meaghen

2015-06-26

Catalysis by montmorillonites clay minerals is regarded as a feasible mechanism for the abiotic production and polymerization of key biomolecules on early Earth. We have investigated a montmorillonite-catalyzed reaction of the 5'-phosphorimidazolide of nucleosides as a model to probe prebiotic synthesis of RNA-type oligomers. Here we show that this model is specific for the generation of RNA oligomers despite deoxy-mononucleotides adsorbing equally well onto the montmorillonite catalytic surfaces. Optimum catalytic activity was observed over a range of pH (6-9) and salinity (1 ± 0.2 M NaCl). When the weathering steps of early Earth that generated catalytic montmorillonite were modified to meet Martian soil conditions, the catalytic activity remained intact without altering the surface layer charge. Additionally, the formation of oligomers up to tetramer was detected using as little as 0.1 mg of Na⁺-montmorillonite, suggesting that the catalytic activity of a Martian clay return sample can be investigated with sub-milligram scale samples. Copyright © 2015 Elsevier Inc. All rights reserved.

Evaluation of an In Vitro Multi-Receptor and Multi-Species Assay for Potential Endocrine Disruptor Targets (SOT)

EPA Science Inventory

Receptor sequence conservation across species may be a key factor determining susceptibility to potential endocrine disrupting chemicals. Computational approaches that compare receptor sequence similarities (e.g. SeqAPASS; https://seqapass.epa.gov/seqapass/) have been proposed to...

Self-assembly assisted polymerization (SAAP): approaching long multi-block copolymers with an ordered chain sequence and controllable block length.

PubMed

Wu, Chi; Xie, Zuowei; Zhang, Guangzhao; Zi, Guofu; Tu, Yingfeng; Yang, Yali; Cai, Ping; Nie, Ting

2002-12-07

A combination of polymer physics and synthetic chemistry has enabled us to develop self-assembly assisted polymerization (SAAP), leading to the preparation of long multi-block copolymers with an ordered chain sequence and controllable block lengths.

Multi-Level Anomaly Detection on Time-Varying Graph Data

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bridges, Robert A; Collins, John P; Ferragut, Erik M

This work presents a novel modeling and analysis framework for graph sequences which addresses the challenge of detecting and contextualizing anomalies in labelled, streaming graph data. We introduce a generalization of the BTER model of Seshadhri et al. by adding flexibility to community structure, and use this model to perform multi-scale graph anomaly detection. Specifically, probability models describing coarse subgraphs are built by aggregating probabilities at finer levels, and these closely related hierarchical models simultaneously detect deviations from expectation. This technique provides insight into a graph's structure and internal context that may shed light on a detected event. Additionally, thismore » multi-scale analysis facilitates intuitive visualizations by allowing users to narrow focus from an anomalous graph to particular subgraphs or nodes causing the anomaly. For evaluation, two hierarchical anomaly detectors are tested against a baseline Gaussian method on a series of sampled graphs. We demonstrate that our graph statistics-based approach outperforms both a distribution-based detector and the baseline in a labeled setting with community structure, and it accurately detects anomalies in synthetic and real-world datasets at the node, subgraph, and graph levels. To illustrate the accessibility of information made possible via this technique, the anomaly detector and an associated interactive visualization tool are tested on NCAA football data, where teams and conferences that moved within the league are identified with perfect recall, and precision greater than 0.786.« less

Ohmic resistance in a multi-anode MxCs

EPA Pesticide Factsheets

A-3txf_sequence summary.xksx: Abundance of contigs or unique sequences for each biofilm samples from anodes in the MEC reactorHodon Waterloo final_fasta_working.docx: Raw sequences with their identification numbersRNA S1_MEC.docx: Representative sequences with their ID number and taxonomyThis dataset is associated with the following publication:Santodomingo, J., H. Ryu, B. Dhar, and H. Lee. Ohmic resistance affects microbial community and electrochemical kinetics in a multi-anode microbial electrochemical cell. JOURNAL OF POWER SOURCES. Elsevier Science Ltd, New York, NY, USA, 331: 315-321, (2016).

Multi-level, multi-scale resource selection functions and resistance surfaces for conservation planning: Pumas as a case study

PubMed Central

Vickers, T. Winston; Ernest, Holly B.; Boyce, Walter M.

2017-01-01

The importance of examining multiple hierarchical levels when modeling resource use for wildlife has been acknowledged for decades. Multi-level resource selection functions have recently been promoted as a method to synthesize resource use across nested organizational levels into a single predictive surface. Analyzing multiple scales of selection within each hierarchical level further strengthens multi-level resource selection functions. We extend this multi-level, multi-scale framework to modeling resistance for wildlife by combining multi-scale resistance surfaces from two data types, genetic and movement. Resistance estimation has typically been conducted with one of these data types, or compared between the two. However, we contend it is not an either/or issue and that resistance may be better-modeled using a combination of resistance surfaces that represent processes at different hierarchical levels. Resistance surfaces estimated from genetic data characterize temporally broad-scale dispersal and successful breeding over generations, whereas resistance surfaces estimated from movement data represent fine-scale travel and contextualized movement decisions. We used telemetry and genetic data from a long-term study on pumas (Puma concolor) in a highly developed landscape in southern California to develop a multi-level, multi-scale resource selection function and a multi-level, multi-scale resistance surface. We used these multi-level, multi-scale surfaces to identify resource use patches and resistant kernel corridors. Across levels, we found puma avoided urban, agricultural areas, and roads and preferred riparian areas and more rugged terrain. For other landscape features, selection differed among levels, as did the scales of selection for each feature. With these results, we developed a conservation plan for one of the most isolated puma populations in the U.S. Our approach captured a wide spectrum of ecological relationships for a population, resulted in effective conservation planning, and can be readily applied to other wildlife species. PMID:28609466

Multi-level, multi-scale resource selection functions and resistance surfaces for conservation planning: Pumas as a case study.

PubMed

Zeller, Katherine A; Vickers, T Winston; Ernest, Holly B; Boyce, Walter M

2017-01-01

The importance of examining multiple hierarchical levels when modeling resource use for wildlife has been acknowledged for decades. Multi-level resource selection functions have recently been promoted as a method to synthesize resource use across nested organizational levels into a single predictive surface. Analyzing multiple scales of selection within each hierarchical level further strengthens multi-level resource selection functions. We extend this multi-level, multi-scale framework to modeling resistance for wildlife by combining multi-scale resistance surfaces from two data types, genetic and movement. Resistance estimation has typically been conducted with one of these data types, or compared between the two. However, we contend it is not an either/or issue and that resistance may be better-modeled using a combination of resistance surfaces that represent processes at different hierarchical levels. Resistance surfaces estimated from genetic data characterize temporally broad-scale dispersal and successful breeding over generations, whereas resistance surfaces estimated from movement data represent fine-scale travel and contextualized movement decisions. We used telemetry and genetic data from a long-term study on pumas (Puma concolor) in a highly developed landscape in southern California to develop a multi-level, multi-scale resource selection function and a multi-level, multi-scale resistance surface. We used these multi-level, multi-scale surfaces to identify resource use patches and resistant kernel corridors. Across levels, we found puma avoided urban, agricultural areas, and roads and preferred riparian areas and more rugged terrain. For other landscape features, selection differed among levels, as did the scales of selection for each feature. With these results, we developed a conservation plan for one of the most isolated puma populations in the U.S. Our approach captured a wide spectrum of ecological relationships for a population, resulted in effective conservation planning, and can be readily applied to other wildlife species.

Construction of multi-scale consistent brain networks: methods and applications.

PubMed

Ge, Bao; Tian, Yin; Hu, Xintao; Chen, Hanbo; Zhu, Dajiang; Zhang, Tuo; Han, Junwei; Guo, Lei; Liu, Tianming

2015-01-01

Mapping human brain networks provides a basis for studying brain function and dysfunction, and thus has gained significant interest in recent years. However, modeling human brain networks still faces several challenges including constructing networks at multiple spatial scales and finding common corresponding networks across individuals. As a consequence, many previous methods were designed for a single resolution or scale of brain network, though the brain networks are multi-scale in nature. To address this problem, this paper presents a novel approach to constructing multi-scale common structural brain networks from DTI data via an improved multi-scale spectral clustering applied on our recently developed and validated DICCCOLs (Dense Individualized and Common Connectivity-based Cortical Landmarks). Since the DICCCOL landmarks possess intrinsic structural correspondences across individuals and populations, we employed the multi-scale spectral clustering algorithm to group the DICCCOL landmarks and their connections into sub-networks, meanwhile preserving the intrinsically-established correspondences across multiple scales. Experimental results demonstrated that the proposed method can generate multi-scale consistent and common structural brain networks across subjects, and its reproducibility has been verified by multiple independent datasets. As an application, these multi-scale networks were used to guide the clustering of multi-scale fiber bundles and to compare the fiber integrity in schizophrenia and healthy controls. In general, our methods offer a novel and effective framework for brain network modeling and tract-based analysis of DTI data.

Correlates of a Single-Item Indicator Versus a Multi-Item Scale of Outness About Same-Sex Attraction

PubMed Central

Noor, Syed W.; Galos, Dylan L.; Simon Rosser, B. R.

2017-01-01

In this study, we investigated if a single-item indicator measured the degree to which people were open about their same-sex attraction (“out”) as accurately as a multi-item scale. For the multi-item scale, we used the Outness Inventory, which includes three subscales: family, world, and religion. We examined correlations between the single- and multi-item measures; between the single-item indicator and the subscales of the multi-item scale; and between the measures and internalized homonegativity, social attitudes towards homosexuality, and depressive symptoms. In addition, we calculated Tjur’s R2 as a measure of predictive power of the single-item indicator, multi-item scale, and subscales of the multi-item scale in predicting two health-related outcomes: depressive symptoms and condomless anal sex with multiple partners. There was a strong correlation between the single- and multi-item measures (r = 0.73). Furthermore, there were strong correlations between the single-item indicator and each subscale of the multi-item scale: family (r = 0.70), world (r = 0.77), and religion (r = 0.50). In addition, the correlations between the single-item indicator and internalized homonegativity (r = −0.63), social attitudes towards homosexuality (r = −0.38), and depression (r = −0.14) were higher than those between the multi-item scale and internalized homonegativity (r = −0.55), social attitudes towards homosexuality (r = −0.21), and depression (r = −0.13). Contrary to the premise that multi-item measures are superior to single-item measures, our collective findings indicate that the single-item indicator of outness performs better than the multi-item scale of outness. PMID:26292840

Multi-color γ-rays from comb-like electron beams driven by incoherent stacks of laser pulses

NASA Astrophysics Data System (ADS)

Kalmykov, S. Y.; Davoine, X.; Ghebregziabher, I.; Shadwick, B. A.

2017-03-01

Trains of fs-length, GeV-scale electron bunches with controlled energy spacing and a 5-D brightness up to 1017 A/m2 may be produced in a mm-scale uniform plasma. The main element of the scheme is an incoherent stack of 10-TW-scale laser pulses of different colors, with mismatched focal spots, with the highest-frequency pulse advanced in time. While driving an electron density bubble, this stack remains almost proof against nonlinear red-shift and self-compression. As a consequence, the unwanted continuous injection of background electrons is minimized. Weak focusing of the trailing (lower-frequency) component of the stack enforces expansions and contractions of the bubble, inducing controlled periodic injection. The resulting train of electron bunches maintains exceptional quality while being accelerated beyond the energy limits predicted by accepted scalings. Inverse Thomson scattering from this comb-like beam generates a sequence of quasi-monochromatic, fs-length γ-ray beams, an asset for nuclear forensics and pump-probe experiments in dense plasmas.

Effect of mineral surface properties (alumina, kaolinite) on the sorptive fractionation mechanisms of soil fulvic acids: Molecular-scale ESI-MS studies

NASA Astrophysics Data System (ADS)

Fleury, Guillaume; Del Nero, Mirella; Barillon, Rémi

2017-01-01

We addressed the effects of mineral surface properties (kaolinite versus Al-oxide) on the sorption-driven fractionation of a soil fulvic acid (FA) at acidic pH, mainly by means of ESI(-)-FTMS analysis of initial and supernatant solutions of FA sorption batch experiments. The MS data provided clear molecular-scale evidence of distinct mechanisms and molecular parameters controlling the FA fractionation upon its sorption on clay and oxide surfaces, respectively. Identification of sorbing and not-sorbing FA compounds in kaolinite-solution systems revealed a weak fractionation among members of sbnd CO2 series of aliphatics or not-condensed aromatics (NCAs) at pH 3.8, and almost no sorption of poorly-oxygenated polycyclic aromatic compounds (PACs) and NCAs. This first molecular-scale description of a FA fractionation in a clay-solution system suggests that H-bonding with low affinity sites (aluminol/silanol) on the basal planes of the clay particles is the main mechanism of sorption. Due to the predominance of such weak and poorly-selective mechanism, the sorption of aliphatic and NCA molecules bearing oxygenated functionalities was prevented at pH 5, due to dissolved Al competing successfully for their coordination. In contrast, a strong FA fractionation was observed onto alumina, with a preferential retention of PACs and highly-oxygenated aliphatics and NCAs. The major part of the poorly oxygenated aliphatics was left in solution. The sorption degree of NCAs and aliphatics was strongly correlated with molecular acidity. For PACs and poorly-oxygenated NCAs, the sorption was driven by reactions of surface ligand exchange (for the most oxygenated compounds) or by hydrophobic interactions (for the least oxygenated compounds).

Reach‐scale river metabolism across contrasting sub‐catchment geologies: Effect of light and hydrology

PubMed Central

Attard, Karl M.; Binley, Andrew; Heppell, Catherine M.; Stahl, Henrik; Trimmer, Mark; Glud, Ronnie N.

2017-01-01

Abstract We investigated the seasonal dynamics of in‐stream metabolism at the reach scale (∼ 150 m) of headwaters across contrasting geological sub‐catchments: clay, Greensand, and Chalk of the upper River Avon (UK). Benthic metabolic activity was quantified by aquatic eddy co‐variance while water column activity was assessed by bottle incubations. Seasonal dynamics across reaches were specific for the three types of geologies. During the spring, all reaches were net autotrophic, with rates of up to 290 mmol C m−2 d−1 in the clay reach. During the remaining seasons, the clay and Greensand reaches were net heterotrophic, with peak oxygen consumption of 206 mmol m−2 d−1 during the autumn, while the Chalk reach was net heterotrophic only in winter. Overall, the water column alone still contributed to ∼ 25% of the annual respiration and primary production in all reaches. Net ecosystem metabolism (NEM) across seasons and reaches followed a general linear relationship with increasing stream light availability. Sub‐catchment specific NEM proved to be linearly related to the local hydrological connectivity, quantified as the ratio between base flow and stream discharge, and expressed on a timescale of 9 d on average. This timescale apparently represents the average period of hydrological imprint for carbon turnover within the reaches. Combining a general light response and sub‐catchment specific base flow ratio provided a robust functional relationship for predicting NEM at the reach scale. The novel approach proposed in this study can help facilitate spatial and temporal upscaling of riverine metabolism that may be applicable to a broader spectrum of catchments. PMID:29242670

Aeolian responses to climate variability during the past century on Mesquite Lake Playa, Mojave Desert

USGS Publications Warehouse

Whitney, John W.; Breit, George N.; Buckingham, S.E.; Reynolds, Richard L.; Bogle, Rian C.; Luo, Lifeng; Goldstein, Harland L.; Vogel, John M.

2015-01-01

The erosion and deposition of sediments by wind from 1901 to 2013 have created large changes in surface features of Mesquite Lake playa in the Mojave Desert. The decadal scale recurrence of sand-sheet development, migration, and merging with older dunes appears related to decadal climatic changes of drought and wetness as recorded in the precipitation history of the Mojave Desert, complemented by modeled soil-moisture index values. Historical aerial photographs, repeat land photographs, and satellite images document the presence and northward migration of a mid-20th century sand sheet that formed during a severe regional drought that coincided with a multi-decadal cool phase of the Pacific Decadal Oscillation (PDO). The sand sheet slowly eroded during the wetter conditions of the subsequent PDO warm phase (1977–1998) due to a lack of added sediment. Sand cohesion gradually increased in the sand sheet by seasonal additions of salt and clay and by re-precipitation of gypsum, which resulted in the wind-carving of yardangs in the receding sand sheet. Smaller yardangs were aerodynamically shaped from coppice dunes with salt-clay crusts, and larger yardangs were carved along the walls and floor of trough blowouts. Evidence of a 19th century cycle of sand-sheet formation and erosion is indicated by remnants of yardangs, photographed in 1901 and 1916, that were found buried in the mid-20th century sand sheet. Three years of erosion measurements on the playa, yardangs, and sand sheets document relatively rapid wind erosion. The playa has lowered 20 to 40 cm since the mid-20th century and a shallow deflation basin has developed since 1999. Annually, 5–10 cm of surface sediment was removed from yardang flanks by a combination of wind abrasion, deflation, and mass movement. The most effective erosional processes are wind stripping of thin crusts that form on the yardang surfaces after rain events and the slumping of sediment blocks from yardang flanks. These wind-eroded landforms persist several decades to a century before eroding away or being buried by younger sands. On Mesquite Lake playa the climatic history of alternating PDO phases of multi-decadal drought and wetness is recorded twice by the presence of yardangs formed nearly a century apart.

CloVR: A virtual machine for automated and portable sequence analysis from the desktop using cloud computing

PubMed Central

2011-01-01

Background Next-generation sequencing technologies have decentralized sequence acquisition, increasing the demand for new bioinformatics tools that are easy to use, portable across multiple platforms, and scalable for high-throughput applications. Cloud computing platforms provide on-demand access to computing infrastructure over the Internet and can be used in combination with custom built virtual machines to distribute pre-packaged with pre-configured software. Results We describe the Cloud Virtual Resource, CloVR, a new desktop application for push-button automated sequence analysis that can utilize cloud computing resources. CloVR is implemented as a single portable virtual machine (VM) that provides several automated analysis pipelines for microbial genomics, including 16S, whole genome and metagenome sequence analysis. The CloVR VM runs on a personal computer, utilizes local computer resources and requires minimal installation, addressing key challenges in deploying bioinformatics workflows. In addition CloVR supports use of remote cloud computing resources to improve performance for large-scale sequence processing. In a case study, we demonstrate the use of CloVR to automatically process next-generation sequencing data on multiple cloud computing platforms. Conclusion The CloVR VM and associated architecture lowers the barrier of entry for utilizing complex analysis protocols on both local single- and multi-core computers and cloud systems for high throughput data processing. PMID:21878105

Insight into the Broad Field of Polymer Nanocomposites: From Carbon Nanotubes to Clay Nanoplatelets, via Metal Nanoparticles

PubMed Central

Stefanescu, Eduard A.; Daranga, Codrin; Stefanescu, Cristina

2009-01-01

Highly ordered polymer nanocomposites are complex materials that display a rich morphological behavior owing to variations in composition, structure, and properties on a nanometer length scale. Metal-polymer nanocomposite materials are becoming more popular for applications requiring low cost, high metal surface areas. Catalytic systems seem to be the most prevalent application for a wide range of metals used in polymer nanocomposites, particularly for metals like Pt, Ni, Co, and Au, with known catalytic activities. On the other hand, among the most frequently utilized techniques to prepare polymer/CNT and/or polymer/clay nanocomposites are approaches like melt mixing, solution casting, electrospinning and solid-state shear pulverization. Additionally, some of the current and potential applications of polymer/CNT and/or polymer/clay nanocomposites include photovoltaic devices, optical switches, electromagnetic interference (EMI) shielding, aerospace and automotive materials, packaging, adhesives and coatings. This extensive review covers a broad range of articles, typically from high impact-factor journals, on most of the polymer-nanocomposites known to date: polymer/carbon nanotubes, polymer/metal nanospheres, and polymer/clay nanoplatelets composites. The various types of nanocomposites are described form the preparation stages to performance and applications. Comparisons of the various types of nanocomposites are conducted and conclusions are formulated.

The Suitable Geological Formations for Spent Fuel Disposal in Romania

DOE Office of Scientific and Technical Information (OSTI.GOV)

Marunteanu, C.; Ionita, G.; Durdun, I.

2007-07-01

Using the experience in the field of advanced countries and formerly Romanian program data, ANDRAD, the agency responsible for the disposal of radioactive wastes, started the program for spent fuel disposal in deep geological formations with a documentary analysis at the national scale. The potential geological formations properly characterized elsewhere in the world: salt, clay, volcanic tuff, granite and crystalline rocks,. are all present in Romania. Using general or specific selection criteria, we presently consider the following two areas for candidate geological formations: 1. Clay formations in two areas in the western part of Romania: (1) The Pannonian basin Socodormore » - Zarand, where the clay formation is 3000 m thick, with many bentonitic strata and undisturbed structure, and (2) The Eocene Red Clay on the Somes River, extending 1200 m below the surface. They both need a large investigation program in order to establish and select the required homogeneous, dry and undisturbed zones at a suitable depth. 2. Old platform green schist formations, low metamorphosed, quartz and feldspar rich rocks, in the Central Dobrogea structural unit, not far from Cernavoda NPP (30 km average distance), 3000 m thick and including many homogeneous, fine granular, undisturbed, up to 300 m thick layers. (authors)« less

Synthesis of nano-sized silicon from natural halloysite clay and its high performance as anode for lithium-ion batteries

NASA Astrophysics Data System (ADS)

Zhou, Xiangyang; Wu, Lili; Yang, Juan; Tang, Jingjing; Xi, Lihua; Wang, Biao

2016-08-01

Recently, nanostructured Si has been intensively studied as a promising anode candidate for lithium ion batteries due to its ultrahigh capacity. However, the downsizing of Si to nanoscale dimension is often impeded by complicated and expensive methods. In this work, natural halloysite clay was utilized for the production of Si nanoparticles through selective acid etching and modified magnesiothermic reduction processes. The physical and chemical changes of these samples during the various processes have been analyzed. The as-prepared Hsbnd Si from halloysite clay is composed of many interconnected Si nanoparticles with an average diameter of 20-50 nm. Owing to the small size and porous nature, the Hsbnd Si nanoparticles exhibit a satisfactory performance as an anode for lithium ion batteries. Without further modification, a stable capacity over 2200 mAh g-1 at a rate of 0.2 C after 100 cycles and a reversible capacity above 800 mAh g-1 at a rate of 1 C after 1000 cycles can be obtained. As a result, this synthetic route is cost-effective and can be scaled up for mass production of Si nanoparticles, which may facilitate valuable utilization of halloysite clay and further commercial application of Si-based anode materials.

Design of Protein Multi-specificity Using an Independent Sequence Search Reduces the Barrier to Low Energy Sequences

PubMed Central

Sevy, Alexander M.; Jacobs, Tim M.; Crowe, James E.; Meiler, Jens

2015-01-01

Computational protein design has found great success in engineering proteins for thermodynamic stability, binding specificity, or enzymatic activity in a ‘single state’ design (SSD) paradigm. Multi-specificity design (MSD), on the other hand, involves considering the stability of multiple protein states simultaneously. We have developed a novel MSD algorithm, which we refer to as REstrained CONvergence in multi-specificity design (RECON). The algorithm allows each state to adopt its own sequence throughout the design process rather than enforcing a single sequence on all states. Convergence to a single sequence is encouraged through an incrementally increasing convergence restraint for corresponding positions. Compared to MSD algorithms that enforce (constrain) an identical sequence on all states the energy landscape is simplified, which accelerates the search drastically. As a result, RECON can readily be used in simulations with a flexible protein backbone. We have benchmarked RECON on two design tasks. First, we designed antibodies derived from a common germline gene against their diverse targets to assess recovery of the germline, polyspecific sequence. Second, we design “promiscuous”, polyspecific proteins against all binding partners and measure recovery of the native sequence. We show that RECON is able to efficiently recover native-like, biologically relevant sequences in this diverse set of protein complexes. PMID:26147100

[Soil particle size distribution and its fractal dimension among degradation sequences of the alpine meadow in the source region of the Yangtze and Yellow River, Qinghai-Tibetan Plateau, China].

PubMed

Wei, Mao-Hong; Lin, Hui-Long

2014-03-01

The alpine meadow in the source region of the Yangtze and Yellow River is suffering serious deterioration. Though great efforts have been put into, the restoration for the degraded grassland is far from being effective, mainly due to poor understanding of the degradation mechanism of alpine meadow in this region. In order to clarify the formation mechanism of degradation grassland and provide the new ideas for restoration, degradation sequences of the alpine meadow in the source region of the Yangtze and Yellow River were taken as target systems to analyze the soil particle size distribution, the fractal dimension of the soil particle size, and the relationship between soil erosion modulus and fractal dimension. The results showed that, with increasing grassland degradation, the percentage contents of clay increased while the percentage contents of silt sand and very fine sand showed a decreasing trend. The fractal dimension presented a positive correlation with clay among the degradation sequences while negative correlations were found with very fine sand and silt sand. The curvilinear regression of fractal dimension and erosion modulus fitted a quadratic function. Judged by the function, fractal dimension 2.81 was the threshold value of soil erosion. The threshold value has an indicative meaning on predicting the breakout of grazing-induced erosion and on restoration of the degraded grassland. Taking fractal dimension of 2.81 as the restoration indicator, adoption of corresponding measures to make fractal dimension less than 2.81, would an effective way to restore the degradation grassland.

Micromechanisms of deformation in shales

NASA Astrophysics Data System (ADS)

Bonnelye, A.; Gharbi, H.; Hallais, S.; Dimanov, A.; Bornert, M.; Picard, D.; Mezni, M.; Conil, N.

2017-12-01

One of the envisaged solutions for nuclear wastes disposal is underground repository in shales. For this purpose, the Callovo Oxfordian (Cox) argillaceous formation is extensively studied. The hydro-mechanical behavior of the argillaceous rock is complex, like the multiphase and multi-scale structured material itself. The argilaceous matrix is composed of interstratified illite-smectite particles, it contains detritic quartz and calcite, accessory pyrite, and the rock porosity ranges from micrometre to nanometre scales. Besides the bedding anisotropy, structural variabilities exist at all scales, from the decametric-metric scales of the geological formation to the respectively millimetric and micrometric scales of the aggregates of particles and clay particles Our study aims at understanding the complex mechanisms which are activated at the micro-scale and are involved in the macroscopic inelastic deformation of such a complex material. Two sets of experiments were performed, at two scales on three bedding orientations (90°, 45° and 0°). The first set was dedicated to uniaxial deformation followed with an optical set-up with a pixel resolution of 0.55µm. These experiments allowed us to see the fracture propagation with different patterns depending on the bedding orientation. For the second set of experiments, an experimental protocol was developed in order to perform uniaxial deformation experiment at controlled displacement rate, inside an environmental scanning electron microscope (ESEM), under controlled relative humidity, in order to preserve as much as possible the natural state of saturation of shales. We aimed at characterizing the mechanical anisotropy and the mechanisms involved in the deformation, with an image resolution below the micormeter. The observed sample surfaces were polished by broad ion beam in order to reveal the fine microstructures of the argillaceous matrix. In both cases, digital images were acquired at different loading stages during the deformation process and Digital Image Correlation Technique (DIC) was applied in order to retrieve full strain fields at various scales from sample scale to microstructure scale. The analysis allows for identification of the active mechanisms, their relationships to the microstructure and their interactions.

Radioactive Demonstration Of Mineralized Waste Forms Made From Hanford Low Activity Waste (Tank Farm Blend) By Fluidized Bed Steam Reformation (FBSR)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jantzen, C. M.; Crawford, C. L.; Bannochie, C. J.

The U.S. Department of Energy’s Office of River Protection (ORP) is responsible for the retrieval, treatment, immobilization, and disposal of Hanford’s tank waste. A key aspect of the River Protection Project (RPP) cleanup mission is to construct and operate the Hanford Tank Waste Treatment and Immobilization Plant (WTP). The WTP will separate the tank waste into high-level and low-activity waste (LAW) fractions, both of which will subsequently be vitrified. The projected throughput capacity of the WTP LAW Vitrification Facility is insufficient to complete the RPP mission in the time frame required by the Hanford Federal Facility Agreement and Consent Order,more » also known as the Tri-Party Agreement (TPA), i.e. December 31, 2047. Supplemental Treatment is likely to be required both to meet the TPA treatment requirements as well as to more cost effectively complete the tank waste treatment mission. The Supplemental Treatment chosen will immobilize that portion of the retrieved LAW that is not sent to the WTP’s LAW Vitrification facility into a solidified waste form. The solidified waste will then be disposed on the Hanford site in the Integrated Disposal Facility (IDF). Fluidized Bed Steam Reforming (FBSR) offers a moderate temperature (700-750°C) continuous method by which LAW can be processed irrespective of whether the waste contain organics, nitrates, sulfates/sulfides, chlorides, fluorides, volatile radionuclides or other aqueous components. The FBSR technology can process these wastes into a crystalline ceramic (mineral) waste form. The mineral waste form that is produced by co-processing waste with kaolin clay in an FBSR process has been shown to be comparable to LAW glass, i.e. leaches Tc-99, Re and Na at <2g/m 2 during ASTM C1285 (Product Consistency) durability testing. Monolithing of the granular FBSR product was investigated to prevent dispersion during transport or burial/storage. Monolithing in an inorganic geopolymer binder, which is amorphous, macro-encapsulates the granules, and the monoliths pass ANSI/ANS 16.1 and ASTM C1308 durability testing with Re achieving a Leach Index (LI) of 9 (the Hanford Integrated Disposal Facility, IDF, criteria for Tc-99) after a few days and Na achieving an LI of >6 (the Hanford IDF criteria for Na) in the first few hours. The granular and monolithic waste forms also pass the EPA Toxicity Characteristic Leaching Procedure (TCLP) for all Resource Conservation and Recovery Act (RCRA) components at the Universal Treatment Standards (UTS). Two identical Benchscale Steam Reformers (BSR) were designed and constructed at SRNL, one to treat non-radioactive simulants and the other to treat actual radioactive wastes. The results from the non-radioactive BSR were used to determine the parameters needed to operate the radioactive BSR in order to confirm the findings of non-radioactive FBSR pilot scale and engineering scale tests and to qualify an FBSR LAW waste form for applications at Hanford. Radioactive testing commenced using SRS LAW from Tank 50 chemically trimmed to look like Hanford’s blended LAW known as the Rassat simulant as this simulant composition had been tested in the non-radioactive BSR, the non-radioactive pilot scale FBSR at the Science Applications International Corporation-Science and Technology Applications Research (SAIC-STAR) facility in Idaho Falls, ID and in the TTT Engineering Scale Technology Demonstration (ESTD) at Hazen Research Inc. (HRI) in Denver, CO. This provided a “tie back” between radioactive BSR testing and non-radioactive BSR, pilot scale, and engineering scale testing. Approximately six hundred grams of non-radioactive and radioactive BSR product were made for extensive testing and comparison to the non-radioactive pilot scale tests performed in 2004 at SAIC-STAR and the engineering scale test performed in 2008 at HRI with the Rassat simulant. The same mineral phases and off-gas species were found in the radioactive and non-radioactive testing. The granular ESTD and BSR products (radioactive and non-radioactive) were analyzed for total constituents and durability tested as a granular waste form. A subset of the granular material was stabilized in a clay based geopolymer matrix at 42% and 65% FBSR loadings and durability tested as a monolith waste form. The 65 wt% FBSR loaded monolith made with clay (radioactive) was more durable than the 67-68 wt% FBSR loaded monoliths made from fly ash (non-radioactive) based on short term PCT testing. Long term, 90 to 107 day, ASTM C1308 testing (similar to ANSI/ANS 16.1 testing) was only performed on two fly ash geopolymer monoliths at 67-68 wt% FBSR loading and three clay geopolymer monoliths at 42 wt% FBSR loading. More clay geopolymers need to be made and tested at longer times at higher FBSR loadings for comparison to the fly ash monoliths. Monoliths made with metakaolin (heat treated) clay are of a more constant composition and are very reactive as the heat treated clay is amorphous and alkali activated. The monoliths made with fly ash are subject to the inherent compositional variation found in fly ash as it is a waste product from burning coal and it contains unreactive components such as mullite. However, both the fly ash and the clay based monoliths perform well in long term ASTM C1308 testing.« less

Microphysics in Multi-scale Modeling System with Unified Physics

NASA Technical Reports Server (NTRS)

Tao, Wei-Kuo

2012-01-01

Recently, a multi-scale modeling system with unified physics was developed at NASA Goddard. It consists of (1) a cloud-resolving model (Goddard Cumulus Ensemble model, GCE model), (2) a regional scale model (a NASA unified weather research and forecast, WRF), (3) a coupled CRM and global model (Goddard Multi-scale Modeling Framework, MMF), and (4) a land modeling system. The same microphysical processes, long and short wave radiative transfer and land processes and the explicit cloud-radiation, and cloud-land surface interactive processes are applied in this multi-scale modeling system. This modeling system has been coupled with a multi-satellite simulator to use NASA high-resolution satellite data to identify the strengths and weaknesses of cloud and precipitation processes simulated by the model. In this talk, a review of developments and applications of the multi-scale modeling system will be presented. In particular, the microphysics development and its performance for the multi-scale modeling system will be presented.

Orbital forcing in the early Miocene alluvial sediments of the western Ebro Basin, Northeast Spain

NASA Astrophysics Data System (ADS)

Garces, M.; Larrasoaña, J. C.; Muñoz, A.; Margalef, O.; Murelaga, X.

2009-04-01

Paleoclimatic reconstructions from terrestrial records are crucial to assess the regional variability of past climates. Despite the apparent direct connection between continental sedimentary environments and climate, interpreting the climatic signature in ancient non-marine sedimentary sequences is often overprinted by source-area related signals. In this regard, foreland basins appear as non-ideal targets as tectonically-driven subsidence and uplift play a major control on the distribution and evolution of sedimentary environments and facies. Foreland basins, however, often yield among the thickest and most continuous stratigraphic records available on continents. The Ebro Basin (north-eastern Spain) is of particular interest among the circum-mediterranean alpine foreland basins because it evolved into a land-locked closed basin since the late Eocene, leading to the accumulation of an exceptionally thick (>5500 m) and continuous sequence of alluvial-lacustrine sediments over a period of about 25 Myr. In this paper we present a detailed cyclostratigraphic study of a 115 m thick section in the Bardenas Reales de Navarra region (western Ebro Basin) in order to test orbital forcing in the Milankovitch frequency band. The study section corresponds to the distal alluvial-playa mud flats which developed in the central sector of the western Ebro Basin, with sediments sourced from both the Pyrenean and Iberian Ranges. Sediments consist of brown-red alluvial clay packages containing minor fine-grained laminated sandstones sheet-beds and channels, grey marls and thin bedded lacustrine limestones arranged in 10 to 20 m thick fining-upwards sequences. Red clayed intervals contain abundant nodular gypsum interpreted as representing a phase of arid and low lake level conditions, while grey marls and limestones indicate wetter intervals recording the expansion of the inner shallow lakes. A magnetostratigraphy-based chronology indicates that the Peñarroya section represents a time interval of about 500 kyr centered around chron C6r, although inferred absolute ages diverge depending on the assumed calibration of geomagnetic reversals with the astronomical time scale (Billups et al., 2004, Lourens et al., 2004). The section was sampled with a portable drill at regular intervals of about 30 cms, representing a time resolution of near 1 kyr. Spectral analysis of different measured parameters (lithology code, color, magnetic susceptibility and other rock magnetic parameters) revealed significant power at 20.4 m, 9.6 m and 4.2 m, which correspond to a ratio of 1:2.1:4.9 similar to that given by the Milankovitch cycles of eccentricity, obliquity and precession. Maximum power in the spetrum is focused in the eccentricity and obliquity bands while signal corresponding to precession is weakly expressed. The existing uncertainties in the astronomical tuning of the Early Miocene geomagnetic polarity time scale prevents us from using magnetostratigraphy to anchor the Peñarroya record with the astronomical solutions (Laskar et al., 2004). Instead, we have tried the expression of the eccentricity cycle to tune the Peñarroya section. We correlated the thick red clayed (dry phase) intervals with eccentricity minima, a phase relationship which is in agreement with that derived from earlier studies in marine and continental records from the Miocene of the Iberian plate (Abels et al., 2008, Sierro et al., 2000). The resulting tuning of the Peñarroya section yields an age for the base of geomagnetic chron C6r which fits with earlier work of Billups et al., (2004), while the top of C6r gives a significantly younger age. References Abels, H., Abdul Aziz, A., Calvo, J.P. and Tuenter, E., 2008. Shallow lacustrine carbonate microfacies document orbitally paced lake-level history in the Miocene Teruel Basin (North-East Spain), Sedimentology doi: 10.1111/j.1365-3091.2008.00976.x. Billups, K., Pälike, H., Channell, J.E.T., Zachos, J. and Shackleton, N.J., 2004. Astronomic calibration of the late Oligocene through early Miocene geomagnetic polarity time scale, Earth and Planetary Letters 224, 33-44. Laskar, J., Robutel, P., Joutel, F., Gastineau, M., Correia, A.C.M. and Levrard, B., 2004. A long-term numerical solution for the insolation quantities of the Earth, Astron. Astrophys. 428, 261-285. Lourens, L.J., Hilgen, F.J., Shackleton, N.J., Laskar, J. and Wilson, D.S., The Neogene Period, in: A Geologic Time Scale, F.M. Gradstein, J.G. Ogg and A. Smith, eds., pp. 409-440, Cambridge University Press, 2004. Sierro, F.J., Ledesma, S., Flores, J.A., Torrescusa, S. and Martinez Del Olmo, W., 2000. Sonic and gamma-ray astrochronology: cycle to cycle calibration of Atlantic climatic records to Mediterranean sapropels and astronomical oscillations, Geology 28, 695-698.

Fungal Community Responses to Past and Future Atmospheric CO2 Differ by Soil Type

PubMed Central

Ellis, J. Christopher; Fay, Philip A.; Polley, H. Wayne; Jackson, Robert B.

2014-01-01

Soils sequester and release substantial atmospheric carbon, but the contribution of fungal communities to soil carbon balance under rising CO2 is not well understood. Soil properties likely mediate these fungal responses but are rarely explored in CO2 experiments. We studied soil fungal communities in a grassland ecosystem exposed to a preindustrial-to-future CO2 gradient (250 to 500 ppm) in a black clay soil and a sandy loam soil. Sanger sequencing and pyrosequencing of the rRNA gene cluster revealed that fungal community composition and its response to CO2 differed significantly between soils. Fungal species richness and relative abundance of Chytridiomycota (chytrids) increased linearly with CO2 in the black clay (P < 0.04, R2 > 0.7), whereas the relative abundance of Glomeromycota (arbuscular mycorrhizal fungi) increased linearly with elevated CO2 in the sandy loam (P = 0.02, R2 = 0.63). Across both soils, decomposition rate was positively correlated with chytrid relative abundance (r = 0.57) and, in the black clay soil, fungal species richness. Decomposition rate was more strongly correlated with microbial biomass (r = 0.88) than with fungal variables. Increased labile carbon availability with elevated CO2 may explain the greater fungal species richness and Chytridiomycota abundance in the black clay soil, whereas increased phosphorus limitation may explain the increase in Glomeromycota at elevated CO2 in the sandy loam. Our results demonstrate that soil type plays a key role in soil fungal responses to rising atmospheric CO2. PMID:25239904

Paper 58714 - Exploring activated faults hydromechanical processes from semi-controled field injection experiments

NASA Astrophysics Data System (ADS)

Guglielmi, Y.; Cappa, F.; Nussbaum, C.

2015-12-01

The appreciation of the sensitivity of fractures and fault zones to fluid-induced-deformations in the subsurface is a key question in predicting the reservoir/caprock system integrity around fluid manipulations with applications to reservoir leakage and induced seismicity. It is also a question of interest in understanding earthquakes source, and recently the hydraulic behavior of clay faults under a potential reactivation around nuclear underground depository sites. Fault and fractures dynamics studies face two key problems (1) the up-scaling of laboratory determined properties and constitutive laws to the reservoir scale which is not straightforward when considering faults and fractures heterogeneities, (2) the difficulties to control both the induced seismicity and the stimulated zone geometry when a fault is reactivated. Using instruments dedicated to measuring coupled pore pressures and deformations downhole, we conducted field academic experiments to characterize fractures and fault zones hydromechanical properties as a function of their multi-scale architecture, and to monitor their dynamic behavior during the earthquake nucleation process. We show experiments on reservoir or cover rocks analogues in underground research laboratories where experimental conditions can be optimized. Key result of these experiments is to highlight how important the aseismic fault activation is compared to the induced seismicity. We show that about 80% of the fault kinematic moment is aseismic and discuss the complex associated fault friction coefficient variations. We identify that the slip stability and the slip velocity are mainly controlled by the rate of the permeability/porosity increase, and discuss the conditions for slip nucleation leading to seismic instability.

A simple purification and activity assay of the coagulant protein from Moringa oleifera seed.

PubMed

Ghebremichael, Kebreab A; Gunaratna, K R; Henriksson, Hongbin; Brumer, Harry; Dalhammar, Gunnel

2005-06-01

Use of extracts from Moringa oleifera (MO) is of great interest for low-cost water treatment. This paper discusses water and salt extraction of a coagulant protein from the seed, purification using ion exchange, its chemical characteristics, coagulation and antimicrobial properties. The coagulant from both extracts is a cationic protein with pI greater than 9.6 and molecular mass less than 6.5 kDa. Mass spectrometric analysis of the purified water extract indicated that it contained at least four homologous proteins, based on MS/MS peptide sequence data. The protein is thermoresistant and remained active after 5h heat treatment at 95 degrees C. The coagulant protein showed both flocculating and antibacterial effects of 1.1--4 log reduction. With samples of high turbidity, the MO extract showed similar coagulation activity as alum. Cecropin A and MO extract were found to have similar flocculation effects for clay and microorganisms. Simple methods for both the purification and assay of MO coagulating proteins are presented, which are necessary for large-scale water treatment applications.

Broad-spectrum in vitro antibacterial activities of clay minerals against antibiotic-susceptible and antibiotic-resistant bacterial pathogens

PubMed Central

HAYDEL, SHELLEY E.; REMENIH, CHRISTINE M.; WILLIAMS, LYNDA B.

2008-01-01

SYNOPSIS Objectives The capacity to properly address the worldwide incidence of infectious diseases lies in the ability to detect, prevent, and effectively treat these infections. Therefore, identifying and analyzing inhibitory agents are worthwhile endeavors in an era when few new classes of effective antimicrobials have been developed. The use of geological nanomaterials to heal skin infections has been evident since the earliest recorded history, and specific clay minerals may prove valuable in the treatment of bacterial diseases, including infections for which there are no effective antibiotics, such as Buruli ulcer and multi-drug resistant infections. Methods We have subjected two iron-rich clay minerals, which have previously been used to treat Buruli ulcer patients, to broth culture testing of antibiotic-susceptible and -resistant pathogenic bacteria to assess the feasibility of using clay minerals as therapeutic agents. Results One specific mineral, CsAg02, demonstrated bactericidal activity against pathogenic Escherichia coli, extended-spectrum β-lactamase (ESBL) E. coli, S. enterica serovar Typhimurium, Pseudomonas aeruginosa, and Mycobacterium marinum and a combined bacteriostatic/bactericidal effect against Staphylococcus aureus, penicillin-resistant S. aureus (PRSA), methicillin-resistant S. aureus (MRSA), and Mycobacterium smegmatis, while another mineral with similar structure and bulk crystal chemistry, CsAr02, had no effect on or enhanced bacterial growth. The <0.2 μm fraction of CsAg02 and CsAg02 heated to 200°C or 550°C retained bactericidal activity, while cation-exchanged CsAg02 and CsAg02 heated to 900°C no longer killed E. coli. Conclusions Our results indicate that specific mineral products have intrinsic, heat-stable antibacterial properties, which could provide an inexpensive treatment against numerous human bacterial infections. PMID:18070832

Understanding Potassium Isotope Fractionation During Authigenic Clay Formation in Pore-fluid Systems: Implications for the δ41K of Seawater

NASA Astrophysics Data System (ADS)

Santiago Ramos, D. P.; Higgins, J. A.

2015-12-01

Improvements in analytical precision on the latest generation multi-collector inductively coupled plasma mass spectrometers (MC-ICP-MS) have revealed a ~2‰ range in the ratios of stable potassium isotopes (41K/39K) in terrestrial materials (Morgan et al., in prep). Preliminary measurements of δ41K values indicate that seawater and silicate rocks are isotopically distinct reservoirs, with seawater having a δ41K value that is ~0.5‰ heavier than the silicate average (-0.5‰; Morgan et al., in prep). The heavy δ41K character of seawater might be related to 1) an isotopically enriched input flux (rivers and high-temperature hydrothermal reactions); or 2) a 41K-depleted sink associated with authigenic clay formation during low-temperature alteration of volcanic rocks. Here we present measurements of the δ41K values of pore-fluids from ODP site 1052 in order to constrain potassium isotope fractionation during secondary clay formation. We find that δ41K values and K concentrations both decline systematically with depth. Results from 1-D diffusion-advection-reaction modeling of potassium concentrations and isotopic compositions indicate that fractionation of K isotopes during diffusion (Bourg et al., 2010) can explain all of the change in δ41K values of the pore-fluid with depth. Although the size of the K sink at site 1052 is a trivial fraction of the global K sink in clay minerals, our results suggest that diffusive fractionation of K isotopes in shallow pore-fluids may be, in part, responsible for the elevated δ41K value of seawater.

Optimization of Brain T2 Mapping Using Standard CPMG Sequence In A Clinical Scanner

NASA Astrophysics Data System (ADS)

Hnilicová, P.; Bittšanský, M.; Dobrota, D.

2014-04-01

In magnetic resonance imaging, transverse relaxation time (T2) mapping is a useful quantitative tool enabling enhanced diagnostics of many brain pathologies. The aim of our study was to test the influence of different sequence parameters on calculated T2 values, including multi-slice measurements, slice position, interslice gap, echo spacing, and pulse duration. Measurements were performed using standard multi-slice multi-echo CPMG imaging sequence on a 1.5 Tesla routine whole body MR scanner. We used multiple phantoms with different agarose concentrations (0 % to 4 %) and verified the results on a healthy volunteer. It appeared that neither the pulse duration, the size of interslice gap nor the slice shift had any impact on the T2. The measurement accuracy was increased with shorter echo spacing. Standard multi-slice multi-echo CPMG protocol with the shortest echo spacing, also the smallest available interslice gap (100 % of slice thickness) and shorter pulse duration was found to be optimal and reliable for calculating T2 maps in the human brain.

Measure Twice, Build Once: Bench-Scale Testing to Evaluate Bioretention Media Design (Presentation)

EPA Science Inventory

Rain garden design manuals and guidelines typically recommend using native soils or engineered media that meet specifications for low content of clay, silt, fine and very fine sands, and organic matter. These characteristics promote stormwater infiltration and sorption of heavy ...

PILOT-SCALE EVALUATION OF AN INCINERABILITY RANKING SYSTEM FOR HAZARDOUS ORGANIC COMPOUNDS

EPA Science Inventory

The subject study was conducted to evaluate an incinerability ranking system developed by teh University of Dayton Research Institute under contract to the EPA Risk Reduction Engineering Laboratory. Fixtures of organic compounds were prepared and combined with a clay-based sorben...

Inventorying Toronto's single detached housing stocks to examine the availability of clay brick for urban mining.

PubMed

Ergun, Deniz; Gorgolewski, Mark

2015-11-01

This study examines the stocks of clay brick in Toronto's single detached housing, to provide parameters for city scale material reuse and recycling. Based on consensus from the literature and statistics on Toronto's single detached housing stocks, city scale reusable and recyclable stocks were estimated to provide an understanding of what volume could be saved from landfill and reintroduced into the urban fabric. On average 2523-4542 m(3) of brick was determined to be available annually for reuse, which would account for 20-36% of the volume of virgin brick consumed in new house construction in 2012. A higher volume, 6187 m(3) of brick, was determined to be available annually for recycling because more of the prevalence of cement-based mortar, which creates challenges for brick reuse in Toronto. The results demonstrated that older housing containing reusable brick were being mostly landfilled and replaced with housing that contained only recyclable brick. Copyright © 2015 Elsevier Ltd. All rights reserved.

Variations in the provenance of the late Neogene Red Clay deposits in northern China

NASA Astrophysics Data System (ADS)

Shang, Yuan; Beets, Christiaan J.; Tang, Hui; Prins, Maarten A.; Lahaye, Yann; van Elsas, Roel; Sukselainen, Leena; Kaakinen, Anu

2016-04-01

The voluminous loess-Red Clay deposits in northern China forming part of the Chinese Loess Plateau (CLP) are valuable terrestrial archives of climatic evolution for the late Cenozoic Era. Fundamental in reconstructing the late Miocene and Pliocene wind patterns and aridification history is a detailed knowledge of the provenance of these deposits. This paper provides end member modelling of bulk grain-size distributions and U-Pb dating of detrital zircons for three distant Red Clay sequences in the northeastern (Baode), southern (Lantian) and western (Dongwan) CLP. Data show that these different sections each display a distinctive compositional structure indicating variable depositional processes, but they also share two significant zircon age populations of 200-300 Ma and 400-500 Ma. While the Permian-Triassic (200-300 Ma) group accounts for a larger proportion of zircons' ages in the northeastern (NE) CLP, the Ordovician-Silurian (400-500 Ma) component is dominant in the southern and western CLP. It is suggested that the Red Clay in the southern and western CLP was mainly derived from the Northern Tibetan Plateau (NTP) and the Taklimakan desert by low-level westerly winds. Samples of the NE CLP show an increased signature of sediments transported by near-surface northwesterly winds from the broad area of the Central Asian Orogen Belt (CAOB). This spatial transport and deposition pattern is supported by the results from the backtrace trajectory modelling of the dominant dust transport pathways in the CLP. It is noted that the Red Clay sample of around 3.6 Ma obtained from the NE CLP shows increased detrital contributions from its west, possibly indicating an intensified westerly wind strength and/or aridity of the NTP and Taklimakan desert due to the uplift of the Tibetan Plateau and Tianshan Mountains in the Pliocene. The onset of enhanced drainage of the Yellow River caused by the increased denudation of the NETP since 3.6 Ma could also have contributed to this.

Lower Cretaceous smarl turbidites of the Argo Abyssal Plain, Indian Ocean

USGS Publications Warehouse

Dumoulin, Julie A.; Stewart, Sondra K.; Kennett, Diana; Mazzullo, Elsa K.

1992-01-01

Sediments recovered during Ocean Drilling Program (ODP) Leg 123 from the Argo Abyssal Plain (AAP) consist largely of turbidites derived from the adjacent Australian continental margin. The oldest abundant turbidites are Valanginian-Aptian in age and have a mixed (smarl) composition; they contain subequal amounts of calcareous and siliceous biogenic components, as well as clay and lesser quartz. Most are thin-bedded, fine sand to mud-sized, and best described by Stow and Piper's model (1984) for fine-grained biogenic turbidites. Thicker (to 3 m), coarser-grained (medium-to-coarse sand-sized) turbidites fit Bouma's model (1962) for sandy turbidites; these generally are base-cut-out (BCDE, BDE) sequences, with B-division parallel lamination as the dominant structure. Parallel laminae most commonly concentrate quartz and/or calcispheres vs. lithic clasts or clay, but distinctive millimeter to centimeter-thick, radiolarian-rich laminae occur in both fine and coarse-grained Valanginian-Hauterivian turbidites.AAP turbidites were derived from relatively deep parts of the continental margin (outer shelf, slope, or rise) that lay below the photic zone, but above the calcite compensation depth (CCD). Biogenic components are largely pelagic (calcispheres, foraminifers, radiolarians, nannofossils); lesser benthic foraminifers are characteristic of deep-water (abyssal to bathyal) environments. Abundant nonbiogenic components are mostly clay and clay clasts; smectite is the dominant clay species, and indicates a volcanogenic provenance, most likely the Triassic-Jurassic volcanic suite exposed along the northern Exmouth Plateau.Lower Cretaceous smarl turbidites were generated during eustatic lowstands and may have reached the abyssal plain via Swan Canyon, a submarine canyon thought to have formed during the Late Jurassic. In contrast to younger AAP turbidites, however, Lower Cretaceous turbidites are relatively fine-grained and do not contain notably older reworked fossils. Early in its history, the northwest Australian margin provided mainly contemporaneous slope sediment to the AAP; marginal basins adjacent to the continent trapped most terrigenous detritus, and pronounced canyon incisement did not occur until Late Cretaceous and, especially, Cenozoic time.

MultiGeMS: detection of SNVs from multiple samples using model selection on high-throughput sequencing data.

PubMed

Murillo, Gabriel H; You, Na; Su, Xiaoquan; Cui, Wei; Reilly, Muredach P; Li, Mingyao; Ning, Kang; Cui, Xinping

2016-05-15

Single nucleotide variant (SNV) detection procedures are being utilized as never before to analyze the recent abundance of high-throughput DNA sequencing data, both on single and multiple sample datasets. Building on previously published work with the single sample SNV caller genotype model selection (GeMS), a multiple sample version of GeMS (MultiGeMS) is introduced. Unlike other popular multiple sample SNV callers, the MultiGeMS statistical model accounts for enzymatic substitution sequencing errors. It also addresses the multiple testing problem endemic to multiple sample SNV calling and utilizes high performance computing (HPC) techniques. A simulation study demonstrates that MultiGeMS ranks highest in precision among a selection of popular multiple sample SNV callers, while showing exceptional recall in calling common SNVs. Further, both simulation studies and real data analyses indicate that MultiGeMS is robust to low-quality data. We also demonstrate that accounting for enzymatic substitution sequencing errors not only improves SNV call precision at low mapping quality regions, but also improves recall at reference allele-dominated sites with high mapping quality. The MultiGeMS package can be downloaded from https://github.com/cui-lab/multigems xinping.cui@ucr.edu Supplementary data are available at Bioinformatics online. © The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

A Decision-Making Method with Grey Multi-Source Heterogeneous Data and Its Application in Green Supplier Selection

PubMed Central

Dang, Yaoguo; Mao, Wenxin

2018-01-01

In view of the multi-attribute decision-making problem that the attribute values are grey multi-source heterogeneous data, a decision-making method based on kernel and greyness degree is proposed. The definitions of kernel and greyness degree of an extended grey number in a grey multi-source heterogeneous data sequence are given. On this basis, we construct the kernel vector and greyness degree vector of the sequence to whiten the multi-source heterogeneous information, then a grey relational bi-directional projection ranking method is presented. Considering the multi-attribute multi-level decision structure and the causalities between attributes in decision-making problem, the HG-DEMATEL method is proposed to determine the hierarchical attribute weights. A green supplier selection example is provided to demonstrate the rationality and validity of the proposed method. PMID:29510521

A Decision-Making Method with Grey Multi-Source Heterogeneous Data and Its Application in Green Supplier Selection.

PubMed

Sun, Huifang; Dang, Yaoguo; Mao, Wenxin

2018-03-03

In view of the multi-attribute decision-making problem that the attribute values are grey multi-source heterogeneous data, a decision-making method based on kernel and greyness degree is proposed. The definitions of kernel and greyness degree of an extended grey number in a grey multi-source heterogeneous data sequence are given. On this basis, we construct the kernel vector and greyness degree vector of the sequence to whiten the multi-source heterogeneous information, then a grey relational bi-directional projection ranking method is presented. Considering the multi-attribute multi-level decision structure and the causalities between attributes in decision-making problem, the HG-DEMATEL method is proposed to determine the hierarchical attribute weights. A green supplier selection example is provided to demonstrate the rationality and validity of the proposed method.

Targeted Enrichment of Large Gene Families for Phylogenetic Inference: Phylogeny and Molecular Evolution of Photosynthesis Genes in the Portullugo Clade (Caryophyllales).

PubMed

Moore, Abigail J; Vos, Jurriaan M De; Hancock, Lillian P; Goolsby, Eric; Edwards, Erika J

2018-05-01

Hybrid enrichment is an increasingly popular approach for obtaining hundreds of loci for phylogenetic analysis across many taxa quickly and cheaply. The genes targeted for sequencing are typically single-copy loci, which facilitate a more straightforward sequence assembly and homology assignment process. However, this approach limits the inclusion of most genes of functional interest, which often belong to multi-gene families. Here, we demonstrate the feasibility of including large gene families in hybrid enrichment protocols for phylogeny reconstruction and subsequent analyses of molecular evolution, using a new set of bait sequences designed for the "portullugo" (Caryophyllales), a moderately sized lineage of flowering plants (~ 2200 species) that includes the cacti and harbors many evolutionary transitions to C$_{\\mathrm{4}}$ and CAM photosynthesis. Including multi-gene families allowed us to simultaneously infer a robust phylogeny and construct a dense sampling of sequences for a major enzyme of C$_{\\mathrm{4}}$ and CAM photosynthesis, which revealed the accumulation of adaptive amino acid substitutions associated with C$_{\\mathrm{4}}$ and CAM origins in particular paralogs. Our final set of matrices for phylogenetic analyses included 75-218 loci across 74 taxa, with ~ 50% matrix completeness across data sets. Phylogenetic resolution was greatly improved across the tree, at both shallow and deep levels. Concatenation and coalescent-based approaches both resolve the sister lineage of the cacti with strong support: Anacampserotaceae $+$ Portulacaceae, two lineages of mostly diminutive succulent herbs of warm, arid regions. In spite of this congruence, BUCKy concordance analyses demonstrated strong and conflicting signals across gene trees. Our results add to the growing number of examples illustrating the complexity of phylogenetic signals in genomic-scale data.

A Multi-Fiber Spectroscopic Search for Low-mass Young Stars in Orion OB1

NASA Astrophysics Data System (ADS)

Loerincs, Jacqueline; Briceno, Cesar; Calvet, Nuria; Mateo, Mario L.; Hernandez, Jesus

2017-01-01

We present here results of a low resolution spectroscopic followup of candidate low-mass pre-main sequence stars in the Orion OB1 association. Our targets were selected from the CIDA Variability Survey of Orion (CVSO), and we used the Michigan/Magellan Fiber Spectrograph (M2FS) on the Magellan Clay 6.5m telescope to obtain spectra of 500 candidate T Tauri stars distributed in seven 0.5 deg diameter fields, adding to a total area of ~5.5 deg2. We identify young stars by looking at the distinctive Hα 6563 Å emission and Lithium Li I 6707 Å absorption features characteristic of young low mass pre-main sequence stars. Furthermore, by measuring the strength of their Hα emission lines, confirmed T Tauri stars can be classified as either Classical T Tauris (CTTS) or Weak-line T Tauris (WTTS), which give indication of whether the star is actively accreting material from a gas and dust disk surrounding the star, which may be the precursor of a planetary system. We confirm a total of 90 T Tauri stars, of which 50% are newly identified young members of Orion; out of the 49 new detections,15 are accreting CTTS, and of these all but one are found in the OB1b sub-region. This result is in line with our previous findings that this region is much younger than the more extended Orion OB1a sub-association. The M2FS results add to our growing census of young stars in Orion, that is allowing us to characterize in a systematic and consistent way the distribution of stellar ages across the entire complex, in order to building a complete picture of star formation in this, one of nearest most active sites of star birth.

Influence of depositional environment on diagenesis in St. Peter sandstone, Michigan basin

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lundgren, C.E. Jr.; Barnes, D.A.

1989-03-01

The Middle Ordovician St. Peter Sandstone in the Michigan basin was deposited in marine peritidal to storm-dominated, outer shelf depositional environments that evolved in a regionally significant transgressive pattern. The formation is bounded by carbonate and shaly clastic strata of the Prairie du Chien Group below and is transitional to condensed sequence clastics and carbonates of the Glenwood Formation above. Sedimentologic and petrographic analysis of conventional core from 25 wells suggests that reservoir quality in the formation is strongly dependent on a complex diagenetic history, especially the nature and subsequent dissolution of intergranular carbonate in the sandstone. Petrographic evidence indicatesmore » that porosity in the formation formed by dissolution of precursor dolomite of various origins and, locally, the formation of pore-filling authigenic clay (chlorite-illite). Authigenic clay is the incongruent dissolution product of dolomite, detrital K-feldspar, and, possibly, muscovite and results in diminished reservoir quality where abundant in the St. Peter Sandstone. Authigenic clay is volumetrically more significant in the upper portions of the formation and is associated with higher concentrations of detrital K-feldspar. Depositional facies controlled the distribution and types of intergranular carbonate (now dolomite) and detrital K-feldspar in the St. Peter Sandstone and hence reservoir quality; both components were more significant in storm-shelf sandstone facies.« less

Borehole petrophysical chemostratigraphy of Pennsylvanian black shales in the Kansas subsurface

USGS Publications Warehouse

Doveton, J.H.; Merriam, D.F.

2004-01-01

Pennsylvanian black shales in Kansas have been studied on outcrop for decades as the core unit of the classic Midcontinent cyclothem. These shales appear to be highstand condensed sections in the sequence stratigraphic paradigm. Nuclear log suites provide several petrophysical measurements of rock chemistry that are a useful data source for chemostratigraphic studies of Pennsylvanian black shales in the subsurface. Spectral gamma-ray logs partition natural radioactivity between contributions by U, Th, and K sources. Elevated U contents in black shales can be related to reducing depositional environments, whereas the K and Th contents are indicators of clay-mineral abundance and composition. The photoelectric factor log measurement is a direct function of aggregate atomic number and so is affected by clay-mineral volume, clay-mineral iron content, and other black shale compositional elements. Neutron porosity curves are primarily a response to hydrogen content. Although good quality logs are available for many black shales, borehole washout features invalidate readings from the nuclear contact devices, whereas black shales thinner than tool resolution will be averaged with adjacent beds. Statistical analysis of nuclear log data between black shales in successive cyclothems allows systematic patterns of their chemical and petrophysical properties to be discriminated in both space and time. ?? 2004 Elsevier B.V. All rights reserved.

Experiments on Pool-riffle Sequences with Multi-fractional Sediment Bed During Floods

NASA Astrophysics Data System (ADS)

Rodriguez, J. F.; Vahidi, E.; Bayat, E.; de Almeida, G. A. M.; Saco, P. M.

2017-12-01

The morphodynamics of pools and riffles has been the subject of research for over a century and has more recently attracted intense attention for their central role in providing habitat diversity conditions, both in terms of flow and substrate. Initial efforts to explain the long-term stability of the pool-riffle (PR) sequences (often referred to as self-maintenance) focused almost exclusively on cross sectional flow characteristics (either average or near bed velocity or shear stress), using episodic shifts in higher shear stress or velocities from riffles to pools during floods (i.e. reversal conditions) as an indication of the long-term self-maintenance of the structures.. However, less attention has been paid to the interactions of flow unsteadiness, sediment supply and sedimentological contrasts as the drivers for maintaining PR sequences. Here we investigate these effects through laboratory experiments on a scaled-down PR sequence of an existing gravel bed river. Froude similitude and equality of Shields' number were applied to scale one- to four-year recurrence flood events and sediment size distributions, respectively. We conducted experiments with different hydrographs and different sedimentological conditions. In each experiment we continuously measured velocities and shear stresses (using acoustic velocity profilers) bed levels (using a bed profiler) and bed grain size distribution (using an automatic digital technique on the painted bed sediments) during the hydrographs. Our results show that the most important factors for self-maintenance were the sediment bed composition, the level of infilling of the pool and the sediment supply grainsize distribution. These results highlight the need to consider the time varying sedimentological characteristics of a PR sequence to assess its capacity for self-maintenance.

The Extent of mRNA Editing Is Limited in Chicken Liver and Adipose, but Impacted by Tissular Context, Genotype, Age, and Feeding as Exemplified with a Conserved Edited Site in COG3.

PubMed

Roux, Pierre-François; Frésard, Laure; Boutin, Morgane; Leroux, Sophie; Klopp, Christophe; Djari, Anis; Esquerré, Diane; Martin, Pascal G P; Zerjal, Tatiana; Gourichon, David; Pitel, Frédérique; Lagarrigue, Sandrine

2015-12-04

RNA editing is a posttranscriptional process leading to differences between genomic DNA and transcript sequences, potentially enhancing transcriptome diversity. With recent advances in high-throughput sequencing, many efforts have been made to describe mRNA editing at the transcriptome scale, especially in mammals, yielding contradictory conclusions regarding the extent of this phenomenon. We show, by detailed description of the 25 studies focusing so far on mRNA editing at the whole-transcriptome scale, that systematic sequencing artifacts are considered in most studies whereas biological replication is often neglected and multi-alignment not properly evaluated, which ultimately impairs the legitimacy of results. We recently developed a rigorous strategy to identify mRNA editing using mRNA and genomic DNA sequencing, taking into account sequencing and mapping artifacts, and biological replicates. We applied this method to screen for mRNA editing in liver and white adipose tissue from eight chickens and confirm the small extent of mRNA recoding in this species. Among the 25 unique edited sites identified, three events were previously described in mammals, attesting that this phenomenon is conserved throughout evolution. Deeper investigations on five sites revealed the impact of tissular context, genotype, age, feeding conditions, and sex on mRNA editing levels. More specifically, this analysis highlighted that the editing level at the site located on COG3 was strongly regulated by four of these factors. By comprehensively characterizing the mRNA editing landscape in chickens, our results highlight how this phenomenon is limited and suggest regulation of editing levels by various genetic and environmental factors. Copyright © 2016 Roux et al.

The Extent of mRNA Editing Is Limited in Chicken Liver and Adipose, but Impacted by Tissular Context, Genotype, Age, and Feeding as Exemplified with a Conserved Edited Site in COG3

PubMed Central

Roux, Pierre-François; Frésard, Laure; Boutin, Morgane; Leroux, Sophie; Klopp, Christophe; Djari, Anis; Esquerré, Diane; Martin, Pascal GP; Zerjal, Tatiana; Gourichon, David; Pitel, Frédérique; Lagarrigue, Sandrine

2015-01-01

RNA editing is a posttranscriptional process leading to differences between genomic DNA and transcript sequences, potentially enhancing transcriptome diversity. With recent advances in high-throughput sequencing, many efforts have been made to describe mRNA editing at the transcriptome scale, especially in mammals, yielding contradictory conclusions regarding the extent of this phenomenon. We show, by detailed description of the 25 studies focusing so far on mRNA editing at the whole-transcriptome scale, that systematic sequencing artifacts are considered in most studies whereas biological replication is often neglected and multi-alignment not properly evaluated, which ultimately impairs the legitimacy of results. We recently developed a rigorous strategy to identify mRNA editing using mRNA and genomic DNA sequencing, taking into account sequencing and mapping artifacts, and biological replicates. We applied this method to screen for mRNA editing in liver and white adipose tissue from eight chickens and confirm the small extent of mRNA recoding in this species. Among the 25 unique edited sites identified, three events were previously described in mammals, attesting that this phenomenon is conserved throughout evolution. Deeper investigations on five sites revealed the impact of tissular context, genotype, age, feeding conditions, and sex on mRNA editing levels. More specifically, this analysis highlighted that the editing level at the site located on COG3 was strongly regulated by four of these factors. By comprehensively characterizing the mRNA editing landscape in chickens, our results highlight how this phenomenon is limited and suggest regulation of editing levels by various genetic and environmental factors. PMID:26637431

2D deblending using the multi-scale shaping scheme

NASA Astrophysics Data System (ADS)

Li, Qun; Ban, Xingan; Gong, Renbin; Li, Jinnuo; Ge, Qiang; Zu, Shaohuan

2018-01-01

Deblending can be posed as an inversion problem, which is ill-posed and requires constraint to obtain unique and stable solution. In blended record, signal is coherent, whereas interference is incoherent in some domains (e.g., common receiver domain and common offset domain). Due to the different sparsity, coefficients of signal and interference locate in different curvelet scale domains and have different amplitudes. Take into account the two differences, we propose a 2D multi-scale shaping scheme to constrain the sparsity to separate the blended record. In the domain where signal concentrates, the multi-scale scheme passes all the coefficients representing signal, while, in the domain where interference focuses, the multi-scale scheme suppresses the coefficients representing interference. Because the interference is suppressed evidently at each iteration, the constraint of multi-scale shaping operator in all scale domains are weak to guarantee the convergence of algorithm. We evaluate the performance of the multi-scale shaping scheme and the traditional global shaping scheme by using two synthetic and one field data examples.

Deep Impact Sequence Planning Using Multi-Mission Adaptable Planning Tools With Integrated Spacecraft Models

NASA Technical Reports Server (NTRS)

Wissler, Steven S.; Maldague, Pierre; Rocca, Jennifer; Seybold, Calina

2006-01-01

The Deep Impact mission was ambitious and challenging. JPL's well proven, easily adaptable multi-mission sequence planning tools combined with integrated spacecraft subsystem models enabled a small operations team to develop, validate, and execute extremely complex sequence-based activities within very short development times. This paper focuses on the core planning tool used in the mission, APGEN. It shows how the multi-mission design and adaptability of APGEN made it possible to model spacecraft subsystems as well as ground assets throughout the lifecycle of the Deep Impact project, starting with models of initial, high-level mission objectives, and culminating in detailed predictions of spacecraft behavior during mission-critical activities.

Sequence-stratigraphic controls on sandstone diagenesis: An example from the Williams Fork formation, Piceance Basin, Colorado

NASA Astrophysics Data System (ADS)

Aboktef, Adel

This study documents the distribution of diagenetic alterations in Williams Fork fluvial sandstones, assess sequence stratigraphic controls on diagenetic features, and addresses diagenetic impacts on porosity. Petrographic point counts of 220 thin sections from six wells forms the database. The near absence of potassium feldspar and volcanic rock fragments in the lower Williams Fork interval and increasing plagioclase content upward represent changes in sediment provenance rather than stratigraphic variability in diagenesis. The lower Williams Fork sands are from sedimentary sources whereas middle and upper Williams Fork sands include input from magmatic arcs and basement uplifts. Compaction, early and late cementation, dissolution, and replacement by calcite or clay minerals combined to alter Williams Fork sandstones. Infiltration of clays occurred prior to any burial. Chlorite, quartz, non-ferroan calcite, compaction and dissolution features, and kaolinite formed during eo-diagenesis at <70°C. More quartz, compaction and dissolution features, plus albite, illite, mixed-layer illite/smectite, ferroan calcite, and dolomite formed in the meso-diagenetic realm (>70°C). Four of these features show spatial variability with respect to systems tracts. Infiltrated clays are concentrated in lowstand systems tracts (LST) and highstand systems tracts (HST) because accommodation space rose slow or fell during deposition of those sands, which led to prolonged sand body exposure on floodplain and ample opportunities for downward percolation of mud during flood events. Concentration of pseudomatrix (mud intraclasts) in HST and LST deposits resulted from floodplain erosion when base-level fell with decreasing accommodation space. Authigenic chlorite formed in the HST and transgressive systems tracts (TST) of the upper half of the Williams Fork Formation because volcanic clasts are abundant in that interval. Quartz overgrowths are more likely to exceed 7% in TST deposits for reasons that are unknown. High total clay content (infiltrated, grain coatings, pseudomatrix) does inhibit quartz overgrowths in all systems tracts. Williams Fork sandstones form low-permeability tight-gas reservoirs. Primary porosity was almost entirely destroyed by compaction and cementation. Reservoir rock resulted from one of two pathways. Eogenetic authigenic chlorite and/or calcite inhibited quartz cementation, minimized compaction and protected some primary porosity. Alternately, dissolution of framework grains or cements created secondary porosity. The later pathway tends to be the more dominant.

Measurement and modelling of reactive transport in geological barriers for nuclear waste containment

DOE PAGES

Xiong, Qingrong; Joseph, Claudia; Schmeide, Katja; ...

2015-10-26

Compacted clays are considered as excellent candidates for barriers to radionuclide transport in future repositories for nuclear waste due to their very low hydraulic permeability. Diffusion is the dominant transport mechanism, controlled by a nano-scale pore system. Assessment of the clays' long-term containment function requires adequate modelling of such pore systems and their evolution. Existing characterisation techniques do not provide complete pore space information for effective modelling, such as pore and throat size distributions and connectivity. Special network models for reactive transport are proposed here using the complimentary character of the pore space and the solid phase. Here, this balancesmore » the insufficient characterisation information and provides the means for future mechanical–physical–chemical coupling. The anisotropy and heterogeneity of clays is represented using different length parameters and percentage of pores in different directions. Resulting networks are described as mathematical graphs with efficient discrete calculus formulation of transport. Opalinus Clay (OPA) is chosen as an example. Experimental data for the tritiated water (HTO) and U(VI) diffusion through OPA are presented. Calculated diffusion coefficients of HTO and uranium species are within the ranges of the experimentally determined data in different clay directions. This verifies the proposed pore network model and validates that uranium complexes are diffusing as neutral species in OPA. In the case of U(VI) diffusion the method is extended to account for sorption and convection. Finally, rather than changing pore radii by coarse grained mathematical formula, physical sorption is simulated in each pore, which is more accurate and realistic.« less

Measurement and modelling of reactive transport in geological barriers for nuclear waste containment.

PubMed

Xiong, Qingrong; Joseph, Claudia; Schmeide, Katja; Jivkov, Andrey P

2015-11-11

Compacted clays are considered as excellent candidates for barriers to radionuclide transport in future repositories for nuclear waste due to their very low hydraulic permeability. Diffusion is the dominant transport mechanism, controlled by a nano-scale pore system. Assessment of the clays' long-term containment function requires adequate modelling of such pore systems and their evolution. Existing characterisation techniques do not provide complete pore space information for effective modelling, such as pore and throat size distributions and connectivity. Special network models for reactive transport are proposed here using the complimentary character of the pore space and the solid phase. This balances the insufficient characterisation information and provides the means for future mechanical-physical-chemical coupling. The anisotropy and heterogeneity of clays is represented using different length parameters and percentage of pores in different directions. Resulting networks are described as mathematical graphs with efficient discrete calculus formulation of transport. Opalinus Clay (OPA) is chosen as an example. Experimental data for the tritiated water (HTO) and U(vi) diffusion through OPA are presented. Calculated diffusion coefficients of HTO and uranium species are within the ranges of the experimentally determined data in different clay directions. This verifies the proposed pore network model and validates that uranium complexes are diffusing as neutral species in OPA. In the case of U(vi) diffusion the method is extended to account for sorption and convection. Rather than changing pore radii by coarse grained mathematical formula, physical sorption is simulated in each pore, which is more accurate and realistic.

Synthesis of Highly Reactive Subnano-sized Zero-valent Iron using Smectite Clay Templates

PubMed Central

Gu, Cheng; Jia, Hanzhang; Li, Hui; Teppen, Brian J.; Boyd, Stephen A.

2010-01-01

A novel method was developed for synthesizing subnano-sized zero-valent iron (ZVI) using smectite clay layers as templates. Exchangeable Fe(III) cations compensating the structural negative charges of smectites were reduced with NaBH4, resulting in the formation of ZVI. The unique structure of smectite clay, in which isolated exchangeable Fe(III) cations reside near the sites of structural negative charges, inhibited the agglomeration of ZVI resulting in the formation of discrete regions of subnanoscale ZVI particles in the smectite interlayer regions. X-ray diffraction revealed an interlayer spacing of ~ 5 Å. The non-structural iron content of this clay yields a calculated ratio of two atoms of ZVI per three cation exchange sites, in full agreement with the XRD results since the diameter of elemental Fe is 2.5 Å. The clay-templated ZVI showed superior reactivity and efficiency compared to other previously reported forms of ZVI as indicated by the reduction of nitrobenzene; structural Fe within the aluminosilicate layers was nonreactive. At a 1:3 molar ratio of nitrobenzene:non-structural Fe, a reaction efficiency of 83% was achieved, and over 80% of the nitrobenzene was reduced within one minute. These results confirm that non-structural Fe from Fe(III)-smectite was reduced predominantly to ZVI which was responsible for the reduction of nitrobenzene to aniline. This new form of subnano-scale ZVI may find utility in the development of remediation technologies for persistent environmental contaminants, e.g. as components of constructed reactive domains such as reactive caps for contaminated sediments. PMID:20446730

Towards designing an optical-flow based colonoscopy tracking algorithm: a comparative study

NASA Astrophysics Data System (ADS)

Liu, Jianfei; Subramanian, Kalpathi R.; Yoo, Terry S.

2013-03-01

Automatic co-alignment of optical and virtual colonoscopy images can supplement traditional endoscopic procedures, by providing more complete information of clinical value to the gastroenterologist. In this work, we present a comparative analysis of our optical flow based technique for colonoscopy tracking, in relation to current state of the art methods, in terms of tracking accuracy, system stability, and computational efficiency. Our optical-flow based colonoscopy tracking algorithm starts with computing multi-scale dense and sparse optical flow fields to measure image displacements. Camera motion parameters are then determined from optical flow fields by employing a Focus of Expansion (FOE) constrained egomotion estimation scheme. We analyze the design choices involved in the three major components of our algorithm: dense optical flow, sparse optical flow, and egomotion estimation. Brox's optical flow method,1 due to its high accuracy, was used to compare and evaluate our multi-scale dense optical flow scheme. SIFT6 and Harris-affine features7 were used to assess the accuracy of the multi-scale sparse optical flow, because of their wide use in tracking applications; the FOE-constrained egomotion estimation was compared with collinear,2 image deformation10 and image derivative4 based egomotion estimation methods, to understand the stability of our tracking system. Two virtual colonoscopy (VC) image sequences were used in the study, since the exact camera parameters(for each frame) were known; dense optical flow results indicated that Brox's method was superior to multi-scale dense optical flow in estimating camera rotational velocities, but the final tracking errors were comparable, viz., 6mm vs. 8mm after the VC camera traveled 110mm. Our approach was computationally more efficient, averaging 7.2 sec. vs. 38 sec. per frame. SIFT and Harris affine features resulted in tracking errors of up to 70mm, while our sparse optical flow error was 6mm. The comparison among egomotion estimation algorithms showed that our FOE-constrained egomotion estimation method achieved the optimal balance between tracking accuracy and robustness. The comparative study demonstrated that our optical-flow based colonoscopy tracking algorithm maintains good accuracy and stability for routine use in clinical practice.

iCN718, an Updated and Improved Genome-Scale Metabolic Network Reconstruction of Acinetobacter baumannii AYE.

PubMed

Norsigian, Charles J; Kavvas, Erol; Seif, Yara; Palsson, Bernhard O; Monk, Jonathan M

2018-01-01

Acinetobacter baumannii has become an urgent clinical threat due to the recent emergence of multi-drug resistant strains. There is thus a significant need to discover new therapeutic targets in this organism. One means for doing so is through the use of high-quality genome-scale reconstructions. Well-curated and accurate genome-scale models (GEMs) of A. baumannii would be useful for improving treatment options. We present an updated and improved genome-scale reconstruction of A. baumannii AYE, named iCN718, that improves and standardizes previous A. baumannii AYE reconstructions. iCN718 has 80% accuracy for predicting gene essentiality data and additionally can predict large-scale phenotypic data with as much as 89% accuracy, a new capability for an A. baumannii reconstruction. We further demonstrate that iCN718 can be used to analyze conserved metabolic functions in the A. baumannii core genome and to build strain-specific GEMs of 74 other A. baumannii strains from genome sequence alone. iCN718 will serve as a resource to integrate and synthesize new experimental data being generated for this urgent threat pathogen.

Long-Term Changes in Chemical Weathering in the Himalayan Region from Indus Fan Sediments

NASA Astrophysics Data System (ADS)

Carter, S.; Griffith, E. M.; Scher, H.; Dellapenna, T. M.; Clift, P. D.

2017-12-01

The Asian Monsoon reflects large-scale interactions between the atmosphere, land, and ocean systems. Increasing our understanding of this system, how and why it has evolved through time, is critically important in order to understand how it may evolve in the future. The radiogenic strontium isotopic signature (87Sr/86Sr) of the clay fraction in deep sea sediment cores within submarine fans has been used as a record of riverine 87Sr/86Sr composition to gain information about Himalayan weathering intensity. Strontium exists in clay minerals primarily in interlayer sites or adsorbed onto mineral surfaces. Interlayer cation exchange is thought to be completed within rivers during recrystallization or neoformation of clays. A record of chemical weathering intensity in the Himalayas is presented by analyzing the 87Sr/86Sr signature of the clay fraction in sediments from International Ocean Discovery Program (IODP) Expedition 355 Sites U1456 and U1457, located on the Indus Fan, eastern Arabian Sea. This record will be coupled with additional records of bulk grain size and K/Al ratios of clay as potentially additional indicators of weathering intensity. The Sr isotopes in the interstitial waters at each site have also been measured (Carter et al., in press) to verify that the Sr in the treated clay fraction is not being reset by diagenesis in the sedimentary column. Initial results verify that the 87Sr/86Sr values of the clay are less than those in the bulk sediment, as expected, but are not similar to pore fluid Sr. 87Sr/86Sr values of the clays show trends suggesting fluctuations in chemical weathering intensity through time. However, bulk grain size and K/Al ratios results conflict with the 87Sr/86Sr values. If the additional proxy records continue to show conflicting results for "weathering intensity", together they may reveal more information regarding the sedimentary system. Ultimately, the various records will either agree, providing strong evidence for changes in chemical weathering and the evolution of the monsoon, or disagree, allowing for further investigation into the relationships between chemical weathering, evolution of the flood plain, and sediment deposition in the fan. These new records will aid in the correlation of Himalayan exhumation and monsoon intensity and help to constrain this dynamic system.

Taxonomic evaluation of putative Streptomyces scabiei strains held in the ARS (NRRL) Culture Collection using multi-locus sequence analysis

USDA-ARS?s Scientific Manuscript database

Multi-locus sequence analysis has been demonstrated to be a useful tool for identification of Streptomyces species and was previously applied to phylogenetically differentiate the type strains of species pathogenic on potatoes (Solanum tuberosum L.). The ARS Culture Collection (NRRL) contains 43 str...

The Contribution of Hydrogeophysics to Hydrogeological Modeling

NASA Astrophysics Data System (ADS)

Christensen, N. B.; Auken, E.; Sorensen, K.

2005-12-01

Electrical and electromagnetic (E&EM) methods are some of the most commonly used geophysical techniques for hydrogeophysical investigations. In this presentation, the use of E&EM methods for watershed-scale hydrogeological investigations are reviewed. Over the past two decades a tremendous development has taken place with regard to E&EM instrumentation, field procedures and interpretation algorithms; a process that to a large extent has been focussed on hydrogeological investigations. The primary parameter mapped by E&EM methods is the electrical resistivity (or the inverse: conductivity). High and low values of the resistivity of geological materials enable the discernment between sand and clay, unsaturated and saturated, fresh and salt water, unaffected and polluted, bedrock and sediment, respectively - all fundamental to hydrogeological modeling. Time-consuming, single-site, individual electrical sounding acquisition geometries have now been replaced by multi-electrode, profile oriented measurements that have the capability to image the variation in resistivity with both depth and along profiles to a depth of 70-100m and a productivity of 1-1.5 km/day/field person. Pulled-array methods, which acquire measurements using multiple electrode configurations while moving, can traverse 10-15 km per day with a depth penetration of approximately 20 m. Transient electromagnetic soundings are carried out as both single-site and pulled-array methods, and recently by helicopter. Very cost-efficient transient methods are now commercially available. E&EM data are complicated, nonlinear functions of the resistivity distribution and the full potential of the data can only be realized by inverting the data to obtain a physical model describing the subsurface resistivity distribution. Model calibration and inverse hydraulic modeling is most often carried out based on very sparse data sets and geological information from a few boreholes. Geophysical models covering an extended area support interpolation between the sparse data and can often be decisive in building a hydrogeological model. E&EM models contribute mainly within three areas: defining the geometrical extent of aquifers by locating impermeable boundaries (clay and bedrock), estimating the vulnerability of aquifers to infiltration of unwanted substances from the surface, and in defining the internal structure (permeability and saturation) of an aquifer. We present several different examples of the use of E&EM methods for assisting in hydrogeological investigations at the regional scale in Denmark. These investigations have primarily been used to define the boundaries between permeable (sand) and impermeable (clay), thus pointing to the presence of possible aquifers and reducing the volume of flow modeling. Important aquifers must be protected by public authorities and geophysical models with good surface resolution can be used to support the necessary physical planning by pointing to areas where aquifers are vulnerable, i.e. areas with little or no capping clay. The use of geophysical models to constrain the internal structure of aquifers is the most complicated of the three and is the subject of recent efforts. Even though there is no general functional relationship between hydraulic conductivity and electrical resistivity, there is sometimes a locally valid correlation that can be utilized in a variety of statistical techniques that will correlate higher resistivities with higher hydraulic conductivities, often in the formulation of an inverse hydraulic modeling. Our efforts suggest that E&EM methods have great potential to assist in watershed characterization studies.

Clay Bearing Units in the Region around Mawrth Vallis: Stratigraphy, Extent, and Possible Alteration Fronts

NASA Technical Reports Server (NTRS)

Dobrea, E. Z. Noe; Bishop, J. L.; McKeown, N. K.; Swayze, G.; Michalski, J. R.; Poulet, F.; Bibring, J.-P.; Mustard, J. F.; Ehlmann, B. L.; Arvidson, R.;

Field-scale modeling of center pivot irrigated cotton: Oullman clay loam series

USDA-ARS?s Scientific Manuscript database

Regulatory ground water pumping restrictions continue to be debated in the Southern Ogallala Aquifer region and will eventually result in allocation of irrigation resources becoming more important. Models that address the temporal and spatial variability of water, energy, and nutrient balances at fi...

ONE-ATMOSPHERE DYNAMICS DESCRIPTION IN THE MODELS-3 COMMUNITY MULTI-SCALE QUALITY (CMAQ) MODELING SYSTEM

EPA Science Inventory

This paper proposes a general procedure to link meteorological data with air quality models, such as U.S. EPA's Models-3 Community Multi-scale Air Quality (CMAQ) modeling system. CMAQ is intended to be used for studying multi-scale (urban and regional) and multi-pollutant (ozon...

The influence of authigenic clay formation on the mineralogy and stable isotopic record of lacustrine carbonates

NASA Astrophysics Data System (ADS)

Bristow, Thomas F.; Kennedy, Martin J.; Morrison, Keith D.; Mrofka, David D.

2012-08-01

The mineralogical, compositional and stable isotopic variability of lacustrine carbonates are frequently used as proxies for ancient paleoenvironmental change in continental settings, under the assumption that precipitated carbonates reflect conditions and chemistry of ancient lake waters. In some saline and alkaline lake systems, however, authigenic clay minerals, forming at or near the sediment water interface, are a major sedimentary component. Often these clays are rich in Mg, influencing the geochemical budget of lake waters, and are therefore expected to influence the properties of contemporaneous authigenic carbonate precipitates (which may also contain Mg). This paper documents evidence for a systematic feedback between clay mineral and carbonate authigenesis through multiple precessionally driven, m-scale sedimentary cycles in lacustrine oil-shale deposits of the Eocene Green River Formation from the Uinta Basin (NE Utah). In the studied section, authigenic, Mg-rich, trioctahedral smectite content varies cyclically between 9 and 39 wt.%. The highest concentrations occur in oil-shales and calcareous mudstones deposited during high lake level intervals that favored sedimentary condensation, lengthening the time available for clay diagenesis and reducing dilution by other siliciclastic phases. An inverse relation between dolomite percentage of carbonate and trioctahedral smectite abundance suggests the Mg uptake during clay authigenesis provides a first order control on carbonate mineralogy that better explains carbonate mineralogical trends than the possible alternative controls of (1) variable Mg/Ca ratios in lake water and (2) degree of microbial activity in sediments. We also observe that cyclical change in carbonate mineralogy, believed to be induced by clay authigenesis, also causes isotopic covariation between δ13CPDB and δ18OPDB of bulk sediments because of differences in the equilibrium fractionation factors of dolomite and calcite (˜2‰ and ˜2.6%, respectively). This provides an alternative mechanism for the common pattern of isotopic covariation, which is typically attributed to the effect of simultaneous changes in water balance and biological activity on the carbon and oxygen isotopic composition of lake waters. These findings may help improve paleoenvironmental reconstructions based on lacustrine carbonate records by adding to the factors known to influence the mineralogical, compositional and stable isotopic signals recorded by lacustrine carbonates.

Changes in carbon stability and microbial activity in size fractions of micro-aggregates in a rice soil chronosequence under long term rice cultivation

NASA Astrophysics Data System (ADS)

Pan, Genxing; Liu, Yalong; Wang, Ping; Li, Lianqinfg; Cheng, Kun; Zheng, Jufeng; Zhang, Xuhui; Zheng, Jinwei; Bian, Rongjun; Ding, Yuanjun; Ma, Chong

2016-04-01

Recent studies have shown soil carbon sequestration through physical protection of relative labile carbon intra micro-aggregates with formation of large sized macro-aggregates under good management of soil and agricultural systems. While carbon stabilization had been increasingly concerned as ecosystem properties, the mechanisms underspin bioactivity of soil carbon with increased carbon stability has been still poorly understood. In this study, topsoil samples were collected from rice soils derived from salt marsh under different length of rice cultivation up to 700 years from eastern China. Particle size fractions (PSF) of soil aggregates were separated using a low energy dispersion protocol. Carbon fractions in the PSFs were analyzed either with FTIR spectroscopy. Soil microbial community of bacterial, fungal and archaeal were analyzed with molecular fingerprinting using specific gene primers. Soil respiration and carbon gain from amended maize as well as enzyme activities were measured using lab incubation protocols. While the PSFs were dominated by the fine sand (200-20μm) and silt fraction (20-2μm), the mass proportion both of sand (2000-200μm) and clay (<2μm) fraction increased with prolonged rice cultivation, giving rise to an increasing trend of mean weight diameter of soil aggregates (also referred to aggregate stability). Soil organic carbon was found most enriched in coarse sand fraction (40-60g/kg), followed by the clay fraction (20-24.5g/kg), but depleted in the silt fraction (~10g/kg). Phenolic and aromatic carbon as recalcitrant pool were high (33-40% of total SOC) in both coarse sand and clay fractions than in both fine sand and silt fractions (20-29% of total SOC). However, the ratio of LOC/total SOC showed a weak decreasing trend with decreasing size of the aggregate fractions. Total gene content in the size fractions followed a similar trend to that of SOC. Bacterial and archaeal gene abundance was concentrated in both sand and clay fractions but that of fungi in sand fraction, and sharply decreased with the decreasing size of aggregate fraction. Gene abundance of archaeal followed a similar trend to that of bacterial but showing an increasing trend with prolonged rice cultivation in both sand and clay fractions. Change in community diversity with sizes of aggregate fractions was found of fungi and weakly of bacterial but not of archaeal. Soil respiration ratio (Respired CO2-C to SOC) was highest in silt fraction, followed by the fine sand fraction but lowest in sand and clay fractions in the rice soils cultivated over 100 years. Again, scaled by total gen concentration, respiration was higher in silt fraction than in other fractions for these rice soils. For the size fractions other than clay fraction, soil gene concentration, Archaeal gen abundance, normalized enzyme activity and carbon sequestration was seen increased but SOC- and gene- scaled soil respiration decreased, more or less with prolonged rice cultivation. As shown with regression analysis, SOC content was positively linearly correlated to recalcitrant carbon proportion but negatively linearly correlated to labile carbon, in both sand and clay fractions. However, soil respiration was found positively logarithmically correlated to total DNA contents and bacterial gen abundance in both sand and clay fractions. Total DNA content was found positively correlated to SOC and labile carbon content, recalcitrant carbon proportion and normalized enzyme activity but negatively to soil respiration, in sand fraction only. Our findings suggested that carbon accumulation and stabilization was prevalent in both sand and clay fraction, only the coarse sand fraction was found responsible for bioactivity dynamics in the rice soils. Thus, soil carbon sequestration was primarily by formation of the macro-aggregates, which again mediated carbon stability and bioactivity in the rice soils under long term rice cultivation.

MinION Analysis and Reference Consortium: Phase 1 data release and analysis

PubMed Central

Eccles, David A.; Zalunin, Vadim; Urban, John M.; Piazza, Paolo; Bowden, Rory J.; Paten, Benedict; Mwaigwisya, Solomon; Batty, Elizabeth M.; Simpson, Jared T.; Snutch, Terrance P.

2015-01-01

The advent of a miniaturized DNA sequencing device with a high-throughput contextual sequencing capability embodies the next generation of large scale sequencing tools. The MinION™ Access Programme (MAP) was initiated by Oxford Nanopore Technologies™ in April 2014, giving public access to their USB-attached miniature sequencing device. The MinION Analysis and Reference Consortium (MARC) was formed by a subset of MAP participants, with the aim of evaluating and providing standard protocols and reference data to the community. Envisaged as a multi-phased project, this study provides the global community with the Phase 1 data from MARC, where the reproducibility of the performance of the MinION was evaluated at multiple sites. Five laboratories on two continents generated data using a control strain of Escherichia coli K-12, preparing and sequencing samples according to a revised ONT protocol. Here, we provide the details of the protocol used, along with a preliminary analysis of the characteristics of typical runs including the consistency, rate, volume and quality of data produced. Further analysis of the Phase 1 data presented here, and additional experiments in Phase 2 of E. coli from MARC are already underway to identify ways to improve and enhance MinION performance. PMID:26834992

Alternative transitions between existing representations in multi-scale maps

NASA Astrophysics Data System (ADS)

Dumont, Marion; Touya, Guillaume; Duchêne, Cécile

2018-05-01

Map users may have issues to achieve multi-scale navigation tasks, as cartographic objects may have various representations across scales. We assume that adding intermediate representations could be one way to reduce the differences between existing representations, and to ease the transitions across scales. We consider an existing multiscale map on the scale range from 1 : 25k to 1 : 100k scales. Based on hypotheses about intermediate representations design, we build custom multi-scale maps with alternative transitions. We will conduct in a next future a user evaluation to compare the efficiency of these alternative maps for multi-scale navigation. This paper discusses the hypotheses and production process of these alternative maps.

CoCoNUT: an efficient system for the comparison and analysis of genomes

PubMed Central

2008-01-01

Background Comparative genomics is the analysis and comparison of genomes from different species. This area of research is driven by the large number of sequenced genomes and heavily relies on efficient algorithms and software to perform pairwise and multiple genome comparisons. Results Most of the software tools available are tailored for one specific task. In contrast, we have developed a novel system CoCoNUT (Computational Comparative geNomics Utility Toolkit) that allows solving several different tasks in a unified framework: (1) finding regions of high similarity among multiple genomic sequences and aligning them, (2) comparing two draft or multi-chromosomal genomes, (3) locating large segmental duplications in large genomic sequences, and (4) mapping cDNA/EST to genomic sequences. Conclusion CoCoNUT is competitive with other software tools w.r.t. the quality of the results. The use of state of the art algorithms and data structures allows CoCoNUT to solve comparative genomics tasks more efficiently than previous tools. With the improved user interface (including an interactive visualization component), CoCoNUT provides a unified, versatile, and easy-to-use software tool for large scale studies in comparative genomics. PMID:19014477

Micro-fabric damages in Boom Clay inferred from cryo-BIB-SEM experiment: recent results

NASA Astrophysics Data System (ADS)

Desbois, Guillaume; Schmatz, Joyce; Klaver, Jop; Urai, Janos L.

2017-04-01

The Boom Clay is considered as a potential host rock in Belgium for nuclear waste disposal in a deep geological formation. One of the keys to understand the long-term performance of such a host rock is the fundamental understanding of coupling between microstructural evolution, poromechanical behaviour and the state of hydration of the system. At in situ conditions, Boom Clay is a nearly water-saturated (>94%) clay-rich geomaterial. Subsequently, for measurement of mechanical and transport properties in laboratory, cores of Boom Clay are vacuum-packed in Al-coated-poly-ethylene barrier foil to be best preserved at original hydric state. Because clay microstructures are very sensitive to dehydration, the validity of investigations done on such preserved or/and dried samples is often questionable. Desbois et al. (2009, 2013, 2014) showed the possibility to image fluid-filled porosity in Boom Clay, by using the FIB-cryo-SEM (FIB: Focussed Ion Beam) and FIB-cryo-SEM (BIB: Broad Ion Beam) techniques. However, surprisingly in Desbois et al. (2014), BIB-cryo-SEM experiments on Boom Clay, shown that the majority of the pores were fluid-free, contrasting with result in Desbois et al. (2009). In Desbois et al. (2014), several reasons were discussed to explain such discrepancies. The likely ones are the sealing efficiency of the Al-barrier foil at long term and the volume expansion due to the release of in-situ stress after core extraction, contributing both to dehydration and microfabric damage. This contribution presents the newest results based on cryo-BIB-SEM. Small pieces (30 mm3) of Boom Clay were preserved in liquid nitrogen after the core extraction at the MOL/Dessel Underground Research Laboratory in Belgium. A maximum of ten minutes time span was achieved between opening the core, the sub-sample extraction and the quenching of sub-samples in liquid nitrogen. First results show that all pores visible at cryo-SEM resolution are water saturated. However, water-filled micro-cracks are also present and they are interpreted to result from the releasing of in-situ stress after the core extraction. Moreover, the comparison of the clay micro-fabrics in the same preserved and dried sample suggests collapsing of the clay aggregates' pores in dried sample. These newest results are still preliminary and they need to be analysed in more details. However, if they are confirmed they may be important input to discuss about the validity of measurement of mechanical and transport properties done in laboratory. Desbois G., Urai J.L. and Kukla P.A. (2009). Morphology of the pore space in claystones - evidence from BIB/FIB ion beam sectioning and cryo-SEM observations. E-Earth, 4 :15-22. Desbois G., J.L. Urai, F. Pérez-Willard, Z. Radi, S. van Offern, I. Burkart, P.A. Kukla, U. Wollenberg (2013). Argon broad ion beam tomography in a cryogenic scanning electron microscope: a novel tool for the investigation of representative microstructures in sedimentary rocks containing pore fluid. Journal of Microscopy, 249(3): 215-235. Desbois G., Urai J.L., Hemes S., Brassinnes S., De Craen M., Sillen X. (2014). Nanometer-scale pore fluid distribution and drying damage in preserved clay cores from Belgian clay formations inferred by BIB-cryo-SEM. Engineering Geology, 170:117-131.

Multi-modulus algorithm based on global artificial fish swarm intelligent optimization of DNA encoding sequences.

PubMed

Guo, Y C; Wang, H; Wu, H P; Zhang, M Q

2015-12-21

Aimed to address the defects of the large mean square error (MSE), and the slow convergence speed in equalizing the multi-modulus signals of the constant modulus algorithm (CMA), a multi-modulus algorithm (MMA) based on global artificial fish swarm (GAFS) intelligent optimization of DNA encoding sequences (GAFS-DNA-MMA) was proposed. To improve the convergence rate and reduce the MSE, this proposed algorithm adopted an encoding method based on DNA nucleotide chains to provide a possible solution to the problem. Furthermore, the GAFS algorithm, with its fast convergence and global search ability, was used to find the best sequence. The real and imaginary parts of the initial optimal weight vector of MMA were obtained through DNA coding of the best sequence. The simulation results show that the proposed algorithm has a faster convergence speed and smaller MSE in comparison with the CMA, the MMA, and the AFS-DNA-MMA.

Correlations of stock price fluctuations under multi-scale and multi-threshold scenarios

NASA Astrophysics Data System (ADS)

Sui, Guo; Li, Huajiao; Feng, Sida; Liu, Xueyong; Jiang, Meihui

2018-01-01

The multi-scale method is widely used in analyzing time series of financial markets and it can provide market information for different economic entities who focus on different periods. Through constructing multi-scale networks of price fluctuation correlation in the stock market, we can detect the topological relationship between each time series. Previous research has not addressed the problem that the original fluctuation correlation networks are fully connected networks and more information exists within these networks that is currently being utilized. Here we use listed coal companies as a case study. First, we decompose the original stock price fluctuation series into different time scales. Second, we construct the stock price fluctuation correlation networks at different time scales. Third, we delete the edges of the network based on thresholds and analyze the network indicators. Through combining the multi-scale method with the multi-threshold method, we bring to light the implicit information of fully connected networks.

Stellar Populations and Nearby Galaxies with the LSST

NASA Astrophysics Data System (ADS)

Saha, Abhijit; Olsen, K.; Monet, D. G.; LSST Stellar Populations Collaboration

2009-01-01

The LSST will produce a multi-color map and photometric object catalog of half the sky to r=27.6 (AB mag; 5-sigma). Time-space sampling of each field spanning ten years will allow variability, proper motion and parallax measurements for objects brighter than r=24.7. As part of providing an unprecedented map of the Galaxy, the accurate multi-band photometry will permit photometric parallaxes, chemical abundances and a handle on ages via colors at turn-off for main-sequence (MS) stars at all distances within the Galaxy as well as in the Magellanic Clouds, and dwarf satellites of the Milky Way. This will support comprehensive studies of star formation histories and chemical evolution for field stars. The structures of the Clouds and dwarf spheroidals will be traced with the MS stars, to equivalent surface densities fainter than 35 mag/square arc-second. With geometric parallax accuracy of 1 milli-arc-sec, comparable to HIPPARCOS but reaching more than 10 magnitudes fainter, a robust complete sample of solar neighborhood stars will be obtained. The LSST time sampling will identify and characterize variable stars of all types, from time scales of 1 hr to several years, a feast for variable star astrophysics. The combination of wide coverage, multi-band photometry, time sampling and parallax taken together will address several key problems: e.g. fine tuning the extragalactic distance scale by examining properties of RR Lyraes and Cepheids as a function of parent populations, extending the faint end of the galaxy luminosity function by discovering them using star count density enhancements on degree scales tracing, and indentifying inter-galactic stars through novae and Long Period Variables.

Microbial Enzyme Activity and Carbon Cycling in Grassland Soil Fractions

NASA Astrophysics Data System (ADS)

Allison, S. D.; Jastrow, J. D.

2004-12-01

Extracellular enzymes are necessary to degrade complex organic compounds present in soils. Using physical fractionation procedures, we tested whether old soil carbon is spatially isolated from degradative enzymes across a prairie restoration chronosequence in Illinois, USA. We found that carbon-degrading enzymes were abundant in all soil fractions, including macroaggregates, microaggregates, and the clay fraction, which contains carbon with a mean residence time of ~200 years. The activities of two cellulose-degrading enzymes and a chitin-degrading enzyme were 2-10 times greater in organic matter fractions than in bulk soil, consistent with the rapid turnover of these fractions. Polyphenol oxidase activity was 3 times greater in the clay fraction than in the bulk soil, despite very slow carbon turnover in this fraction. Changes in enzyme activity across the restoration chronosequence were small once adjusted for increases in soil carbon concentration, although polyphenol oxidase activity per unit carbon declined by 50% in native prairie versus cultivated soil. These results are consistent with a `two-pool' model of enzyme and carbon turnover in grassland soils. In light organic matter fractions, enzyme production and carbon turnover both occur rapidly. However, in mineral-dominated fractions, both enzymes and their carbon substrates are immobilized on mineral surfaces, leading to slow turnover. Soil carbon accumulation in the clay fraction and across the prairie restoration chronosequence probably reflects increasing physical isolation of enzymes and substrates on the molecular scale, rather than the micron to millimeter scale.

Fluid-rock interaction controlling clay-mineral crystallization in quartz-rich rocks and its influence on the seismicity of the Carboneras fault area (SE Spain)

NASA Astrophysics Data System (ADS)

Jimenez-Espinosa, R.; Abad, I.; Jimenez-Millan, J.; Lorite-Herrera, M.

2009-04-01

The Carboneras Fault zone is one of the longest fault in the Betic Cordillera (SE Spain) and it would be a good candidate to generate large magnitude earthquakes (Gracia et al., 2006). Seismicity in the region is characterised by low to moderate magnitude events, although large destructive earthquakes have occurred, which reveals significant earthquake and tsunami hazards (Masana et al., 2004). Due to the internal architecture of the fault zone, shear lenses of post-orogenic sediments of Miocene and Pliocene age including marls and sandstones sequences are juxtaposed to the predominant slaty gouges of the Alpine basement. Microcataclasites and gouges of the quartz-rich post-orogenic sediments are also developed as cm- to m-scale bands, allowing the comparison between the deformed materials and their protoliths. Red, yellow and white sandstones and their respective cataclasites can be identified. This communication is concerned with the clay mineral crystallization events in these materials and its possible influence on the seismicity model of the region. The presence of phyllosilicates in fault zones as either neoformed or inherited clays is commonly related with fluid circulation and a mechanically weak fault behaviour (e.g., Wang, 1984). A critical factor for the understanding of the mechanical role of clays in fault rocks is to determine the timing of formation of mineral assemblages and microstructure of fault rocks and protolith. The effects of post-faulting alteration limit inferences about fault behaviour that can be made from exhumed rocks. The Carboneras fault zone provides good opportunities to study mineral processes enhanced by deformation, given that it is located in a region of arid climate and shows outcroppings of quartzitic rocks included in slaty rocks. Combined XRD, optical microscopy and SEM analyses reveal that deformed quartzitic rocks are enriched in phyllosilicates, increasing especially the amount of chlorite. The samples strongly damaged are characterised also by the presence of dolomite and gypsum. The deformation is highly localized, developing phyllosilicate-rich bands highly foliated due to the presence of fine-sized aligned clays (chlorite and mica). In some undeformed lenses of the cataclastic rocks, variable-sized patches of phyllosilicates containing random oriented stacks of chlorite and mica are developed. BSE images reveal that the stacks are made of two intergrown compositional types of chlorite. These results lead to conclude that limited clay growth during faulting occurred. The absence of significant compositional differences between undeformed and deformed phyllosilicates suggests that whereas fluids were present during strike-slip faulting, fluids were not preferentially focused along the quartz-rich rocks of the fault zone by phyllosilicates avoiding the development of the synkinematic clay alteration process. However, clays played an important role for the mechanical behaviour of the quartzitic rocks in the fault zone. Deformation is highly localized in chlorite-rich sandstones. These sandstones show substantial clay crystallization which texture can be related with a hydrothermal origin before strike-slip faulting, likely associated with the volcanic activity of the area leading to form of chlorite/mica patches. These data indicate that, although elevated fluid pressure confined by clay fabric cannot be appealed for the mechanical behaviour of the sandstones of the Carboneras fault, clay fabrics developed during deformation dominated the fault-weakening mechanism. We consider that lubricating properties of phyllosilicates in the quartzitic rocks were an important factor controlling movement mechanisms promoting the predominance of creep as regards seismic stick-slip (Bedrosian et al., 2004) reducing the possibility of larger seismogenic events that nucleate on localized fault planes developed within quartzitic rocks contained within the fault zone. Finally the crystallization of dolomite and gypsum in the highly damaged areas of the microcataclasites could be related with recent low-temperature and high-salinity water circulation episodes, suggesting that cataclasis may control pathways and focus circulation of the current aquifer systems. References Bedrosian, P.A., Unsworth, M.J., Egbert, G.D., Thuerber, C.H. (2004): Geophysical images of creeping segment of the San Andreas Fault: Implications for the role of crustal fluids in the earthquake process. Tectonophysics, 385, 137-158. Gracia, E., Palla, R., Soto, J.I., Comas, M., Moreno, X., Masana, E., Santanach, P., Diez, S., García, M., Dañobeitia, J. & HITS scientific party (2006): Active faulting offshore SE Spain (Alboran Sea): Implications for earthquake hazard assessment in the Southern Iberian Margin. Earth and Planetary Science Letters, 241, 734-749. Masana E., Martínez-Díaz, J.J., Hernández-Enrile, J.L. & Santanach, P. (2004): The Alhama de Murcia fault (SE Spain), a seismogenic fault in a diffuse plate boundary: seismotectonic implications for the Ibero-Magrebian region. J. Geophys. Res., 109, 1-17. Wang, C.Y. (1984): On the constitution of the San Andreas fault zone in central California. J. Geophys. Res., 89, 5858-5866.

MultiSeq: unifying sequence and structure data for evolutionary analysis

PubMed Central

Roberts, Elijah; Eargle, John; Wright, Dan; Luthey-Schulten, Zaida

2006-01-01

Background Since the publication of the first draft of the human genome in 2000, bioinformatic data have been accumulating at an overwhelming pace. Currently, more than 3 million sequences and 35 thousand structures of proteins and nucleic acids are available in public databases. Finding correlations in and between these data to answer critical research questions is extremely challenging. This problem needs to be approached from several directions: information science to organize and search the data; information visualization to assist in recognizing correlations; mathematics to formulate statistical inferences; and biology to analyze chemical and physical properties in terms of sequence and structure changes. Results Here we present MultiSeq, a unified bioinformatics analysis environment that allows one to organize, display, align and analyze both sequence and structure data for proteins and nucleic acids. While special emphasis is placed on analyzing the data within the framework of evolutionary biology, the environment is also flexible enough to accommodate other usage patterns. The evolutionary approach is supported by the use of predefined metadata, adherence to standard ontological mappings, and the ability for the user to adjust these classifications using an electronic notebook. MultiSeq contains a new algorithm to generate complete evolutionary profiles that represent the topology of the molecular phylogenetic tree of a homologous group of distantly related proteins. The method, based on the multidimensional QR factorization of multiple sequence and structure alignments, removes redundancy from the alignments and orders the protein sequences by increasing linear dependence, resulting in the identification of a minimal basis set of sequences that spans the evolutionary space of the homologous group of proteins. Conclusion MultiSeq is a major extension of the Multiple Alignment tool that is provided as part of VMD, a structural visualization program for analyzing molecular dynamics simulations. Both are freely distributed by the NIH Resource for Macromolecular Modeling and Bioinformatics and MultiSeq is included with VMD starting with version 1.8.5. The MultiSeq website has details on how to download and use the software: PMID:16914055

Environmental Controls on Multi-Scale Soil Nutrient Variability in the Tropics: the Importance of Land-Cover Change

NASA Astrophysics Data System (ADS)

Holmes, K. W.; Kyriakidis, P. C.; Chadwick, O. A.; Matricardi, E.; Soares, J. V.; Roberts, D. A.

2003-12-01

The natural controls on soil variability and the spatial scales at which correlation exists among soil and environmental variables are critical information for evaluating the effects of deforestation. We detect different spatial scales of variability in soil nutrient levels over a large region (hundreds of thousands of km2) in the Amazon, analyze correlations among soil properties at these different scales, and evaluate scale-specific relationships among soil properties and the factors potentially driving soil development. Statistical relationships among physical drivers of soil formation, namely geology, precipitation, terrain attributes, classified soil types, and land cover derived from remote sensing, were included to determine which factors are related to soil biogeochemistry at each spatial scale. Surface and subsurface soil profile data from a 3000 sample database collected in Rond“nia, Brazil, were used to investigate patterns in pH, phosphorus, nitrogen, organic carbon, effective cation exchange capacity, calcium, magnesium, potassium, aluminum, sand, and clay in this environment grading from closed canopy tropical forest to savanna. We focus on pH in this presentation for simplicity, because pH is the single most important soil characteristic for determining the chemical environment of higher plants and soil microbial activity. We determined four spatial scales which characterize integrated patterns of soil chemistry: less than 3 km; 3 to 10 km; 10 to 68 km; and from 68 to 550 km (extent of study area). Although the finest observable scale was fixed by the field sampling density, the coarser scales were determined from relationships in the data through coregionalization modeling, rather than being imposed by the researcher. Processes which affect soils over short distances, such as land cover and terrain attributes, were good predictors of fine scale spatial components of nutrients; processes which affect soils over very large distances, such as precipitation and geology, were better predictors at coarse spatial scales. However, this result may be affected by the resolution of the available predictor maps. Land-cover change exerted a strong influence on soil chemistry at fine spatial scales, and had progressively less of an effect at coarser scales. It is important to note that land cover, and interactions among land cover and the other predictors, continued to be a significant predictor of soil chemistry at every spatial scale up to hundreds of thousands of kilometers.

High performance MRI simulations of motion on multi-GPU systems.

PubMed

Xanthis, Christos G; Venetis, Ioannis E; Aletras, Anthony H

2014-07-04

MRI physics simulators have been developed in the past for optimizing imaging protocols and for training purposes. However, these simulators have only addressed motion within a limited scope. The purpose of this study was the incorporation of realistic motion, such as cardiac motion, respiratory motion and flow, within MRI simulations in a high performance multi-GPU environment. Three different motion models were introduced in the Magnetic Resonance Imaging SIMULator (MRISIMUL) of this study: cardiac motion, respiratory motion and flow. Simulation of a simple Gradient Echo pulse sequence and a CINE pulse sequence on the corresponding anatomical model was performed. Myocardial tagging was also investigated. In pulse sequence design, software crushers were introduced to accommodate the long execution times in order to avoid spurious echoes formation. The displacement of the anatomical model isochromats was calculated within the Graphics Processing Unit (GPU) kernel for every timestep of the pulse sequence. Experiments that would allow simulation of custom anatomical and motion models were also performed. Last, simulations of motion with MRISIMUL on single-node and multi-node multi-GPU systems were examined. Gradient Echo and CINE images of the three motion models were produced and motion-related artifacts were demonstrated. The temporal evolution of the contractility of the heart was presented through the application of myocardial tagging. Better simulation performance and image quality were presented through the introduction of software crushers without the need to further increase the computational load and GPU resources. Last, MRISIMUL demonstrated an almost linear scalable performance with the increasing number of available GPU cards, in both single-node and multi-node multi-GPU computer systems. MRISIMUL is the first MR physics simulator to have implemented motion with a 3D large computational load on a single computer multi-GPU configuration. The incorporation of realistic motion models, such as cardiac motion, respiratory motion and flow may benefit the design and optimization of existing or new MR pulse sequences, protocols and algorithms, which examine motion related MR applications.

Lateral trends and vertical sequences in estuarine sediments, Willapa Bay, Washington

USGS Publications Warehouse

Clifton, H. Edward; Phillips, L.

1980-01-01

Willapa Bay is a sizable estuary on the southern coast of Washington- Relatively unmodified in a geologic sense by human activity the bay provides an excellent example of modern depositional facies in an estuarine setting. Studies of these deposits indicate that consistent lateral trends exist in sediment texture and sedimentary structures. The texture changes from sandy at the mouth of the bay to muddy in its upper parts. In any part of the bay , sediment is coarsest in the channel bottoms, where lag deposits accumulate. The sediment tends to fine in an upslope direction and is finest in supratidal flat deposits of silt and clay. The nature of sedimentary structures depends on the combination of physical and biological processes and sediment textures. Bedforms exist wherever the bed is sandy. In the main tidal channels sandwaves and dunes up to 4 meters high occur. In tributary channels and at the margins of the main channel, at shallower depths and under less intense currents , the structures are generally less than a meter high. Current ripples occur in t he sandy bed of all of the tidal channels and in runoff channels cross the tidal flat. Symmetric long-crested ripples are produced by wave action over the sandy intertidal flat. Internal structures in the bay's sediment depend not only on the nature of the bedform but also on the rate of bioturbation relative to physical processes. Under fields of large sandwaves or dunes, medium- to large-scale tabular and trough crossbedding predominates. This crossbedding generally is unidirectional, reflecting the locally dominant current (ebb or flood). Ripple bedding predominates elsewhere in sandy sediment within the channels. Where sand transport is diminished, as on the floor of the upper tributary channels, bioturbation exceeds the rate of production of physical structures and bedding is destroyed. The depositional banks in such areas tend to be sites of rapid sediment accumulation and bedding in the form of interlayered sand (commonly ripple bedded) and mud persists. On intertidal flats the sediment accumulates slowly and bioturbation erases nearly all physical structures. Bedding is preserved only where deposition is locally rapid , as in topographic depressions or on the depositional banks of runoff channels, or where faunal activity is inhibited, as beneath mounds of blue-green algae. The rate of sedimentation is slower still on the supratidal flats, but the general paucity of faunal activity allows the preservation of thin alternations of fine sand , silt or clay. The lateral migration of the tidal channels produces vertical sequences in which topographically higher facies are superposed on one another. Near the mouth of the estuary the upward sequence: lag deposit — crossbedded sand — ripple or planar-bedded sand is typical. The crossbedding shows a general upward decrease in thickness and a progression from trough to tabular units. In the main tidal channel - in the central estuary and in sandy tributary channels, the typical vertical sequence resembles that near the mouth , with the exception that the sequence is capped by bioturbated sandy or muddy tide flat deposits. In the upper estuary , where muddy sediment predominates, a typical sequence shows the progression-. bioturbated lag deposit — gently dipping interlaminated sand and mud layers of the accretionary bank — bioturbated mud flat deposits — thinly laminated fine supratidal deposits.

Estimating spatial variations in water content of clay soils from time-lapse electrical conductivity surveys

USDA-ARS?s Scientific Manuscript database

Soil water content (theta) is one of the most important drivers for many biogeochemical fluxes at different temporal and spatial scales. Hydrogeophysical non-invasive sensors that measure the soil apparent electrical conductivity (ECa) have been widely used to infer spatial and temporal patterns of...

A Simple Boyle's Law Experiment.

ERIC Educational Resources Information Center

Lewis, Don L.

1997-01-01

Describes an experiment to demonstrate Boyle's law that provides pressure measurements in a familiar unit (psi) and makes no assumptions concerning atmospheric pressure. Items needed include bathroom scales and a 60-ml syringe, castor oil, disposable 3-ml syringe and needle, modeling clay, pliers, and a wooden block. Commercial devices use a…

Noise Suppression Based on Multi-Model Compositions Using Multi-Pass Search with Multi-Label N-gram Models

NASA Astrophysics Data System (ADS)

Jitsuhiro, Takatoshi; Toriyama, Tomoji; Kogure, Kiyoshi

We propose a noise suppression method based on multi-model compositions and multi-pass search. In real environments, input speech for speech recognition includes many kinds of noise signals. To obtain good recognized candidates, suppressing many kinds of noise signals at once and finding target speech is important. Before noise suppression, to find speech and noise label sequences, we introduce multi-pass search with acoustic models including many kinds of noise models and their compositions, their n-gram models, and their lexicon. Noise suppression is frame-synchronously performed using the multiple models selected by recognized label sequences with time alignments. We evaluated this method using the E-Nightingale task, which contains voice memoranda spoken by nurses during actual work at hospitals. The proposed method obtained higher performance than the conventional method.

Quantifying distinct associations on different temporal scales: comparison of DCCA and Pearson methods

NASA Astrophysics Data System (ADS)

Piao, Lin; Fu, Zuntao

2016-11-01

Cross-correlation between pairs of variables takes multi-time scale characteristic, and it can be totally different on different time scales (changing from positive correlation to negative one), e.g., the associations between mean air temperature and relative humidity over regions to the east of Taihang mountain in China. Therefore, how to correctly unveil these correlations on different time scales is really of great importance since we actually do not know if the correlation varies with scales in advance. Here, we compare two methods, i.e. Detrended Cross-Correlation Analysis (DCCA for short) and Pearson correlation, in quantifying scale-dependent correlations directly to raw observed records and artificially generated sequences with known cross-correlation features. Studies show that 1) DCCA related methods can indeed quantify scale-dependent correlations, but not Pearson method; 2) the correlation features from DCCA related methods are robust to contaminated noises, however, the results from Pearson method are sensitive to noise; 3) the scale-dependent correlation results from DCCA related methods are robust to the amplitude ratio between slow and fast components, while Pearson method may be sensitive to the amplitude ratio. All these features indicate that DCCA related methods take some advantages in correctly quantifying scale-dependent correlations, which results from different physical processes.

Quantifying distinct associations on different temporal scales: comparison of DCCA and Pearson methods.

PubMed

Piao, Lin; Fu, Zuntao

2016-11-09

Cross-correlation between pairs of variables takes multi-time scale characteristic, and it can be totally different on different time scales (changing from positive correlation to negative one), e.g., the associations between mean air temperature and relative humidity over regions to the east of Taihang mountain in China. Therefore, how to correctly unveil these correlations on different time scales is really of great importance since we actually do not know if the correlation varies with scales in advance. Here, we compare two methods, i.e. Detrended Cross-Correlation Analysis (DCCA for short) and Pearson correlation, in quantifying scale-dependent correlations directly to raw observed records and artificially generated sequences with known cross-correlation features. Studies show that 1) DCCA related methods can indeed quantify scale-dependent correlations, but not Pearson method; 2) the correlation features from DCCA related methods are robust to contaminated noises, however, the results from Pearson method are sensitive to noise; 3) the scale-dependent correlation results from DCCA related methods are robust to the amplitude ratio between slow and fast components, while Pearson method may be sensitive to the amplitude ratio. All these features indicate that DCCA related methods take some advantages in correctly quantifying scale-dependent correlations, which results from different physical processes.

Integrating petrography, mineralogy and hydrochemistry to constrain the influence and distribution of groundwater contributions to baseflow in poorly productive aquifers: insights from Gortinlieve catchment, Co. Donegal, NW Ireland.

PubMed

Caulfield, John; Chelliah, Merlyn; Comte, Jean-Christophe; Cassidy, Rachel; Flynn, Raymond

2014-12-01

Identifying groundwater contributions to baseflow forms an essential part of surface water body characterisation. The Gortinlieve catchment (5 km(2)) comprises a headwater stream network of the Carrigans River, itself a tributary of the River Foyle, NW Ireland. The bedrock comprises poorly productive metasediments that are characterised by fracture porosity. We present the findings of a multi-disciplinary study that integrates new hydrochemical and mineralogical investigations with existing hydraulic, geophysical and structural data to identify the scales of groundwater flow and the nature of groundwater/bedrock interaction (chemical denudation). At the catchment scale, the development of deep weathering profiles is controlled by NE-SW regional scale fracture zones associated with mountain building during the Grampian orogeny. In-situ chemical denudation of mineral phases is controlled by micro- to meso-scale fractures related to Alpine compression during Palaeocene to Oligocene times. The alteration of primary muscovite, chlorite (clinochlore) and albite along the surfaces of these small-scale fractures has resulted in the precipitation of illite, montmorillonite and illite-montmorillonite clay admixtures. The interconnected but discontinuous nature of these small-scale structures highlights the role of larger scale faults and fissures in the supply and transportation of weathering solutions to/from the sites of mineral weathering. The dissolution of primarily mineral phases releases the major ions Mg, Ca and HCO3 that are shown to subsequently form the chemical makeup of groundwaters. Borehole groundwater and stream baseflow hydrochemical data are used to constrain the depths of groundwater flow pathways influencing the chemistry of surface waters throughout the stream profile. The results show that it is predominantly the lower part of the catchment, which receives inputs from catchment/regional scale groundwater flow, that is found to contribute to the maintenance of annual baseflow levels. This study identifies the importance of deep groundwater in maintaining annual baseflow levels in poorly productive bedrock systems. Copyright © 2014 Elsevier B.V. All rights reserved.

Integrated Field Scale, Lab Scale, and Modeling Studies for Improving Our Ability to Assess the Groundwater to Indoor Air Pathway at Chlorinated Solvent Impacted Groundwater Sites

DTIC Science & Technology

2016-01-07

clays . The Emean/Estatic values were greater for loam than the other two types of soil – indicating greater amplification of emissions relative to a...ɸT): 0.35 m3-voids/m3- soil Soil permeability to soil gas flow (Kg): 1E-7 cm2 Soil gas phase dynamic viscosity : 1.8E-4 g/cm/s Soil domain

Multi-scale Mexican spotted owl (Strix occidentalis lucida) nest/roost habitat selection in Arizona and a comparison with single-scale modeling results

Treesearch

Brad C. Timm; Kevin McGarigal; Samuel A. Cushman; Joseph L. Ganey

2016-01-01

Efficacy of future habitat selection studies will benefit by taking a multi-scale approach. In addition to potentially providing increased explanatory power and predictive capacity, multi-scale habitat models enhance our understanding of the scales at which species respond to their environment, which is critical knowledge required to implement effective...

Fundamental Studies of Clay and Clay-rich Mineral Reactions with H2O-CO2 Fluids: Application to Geological Carbon Dioxide Sequestration

NASA Astrophysics Data System (ADS)

Chizmeshya, A. V.

2016-12-01

Geological sequestration is currently being actively developed as a near-term, large-scale carbon sequestration technology in which supercritical carbon dioxide (scCO2) is injected below-ground into saline aquifers, depleted and existing oil and gas reservoir. Implementation strongly depends on the specific geological profile of each candidate injection site. Caprock formations that contain swellable clay minerals are of particular concern, since interaction with injected CO2 may produce complex local structural effects related to shrinkage, desiccation, and plastic response leading to CO2 escape. The current knowledge-base on rock-brine-CO2 interactions often relies on semi-empirical geochemical modeling and autoclave experiments, which necessitate quenching (de-gassing) to ambient conditions for characterization. To avoid these effects we used a moissanite-based microreaction system (Diefenbacher, J et al Rev. Mod. Inst., 76 15103 (2005)) which enables in situ synchrotron characterization of interactions under constant CO2 activity. Synchrotron studies were performed at the GSECARS sector of the Argonne National Lab APS to systematically determine the response of representative Ca- and Na-montmorillonites (STx-1, SWy-1) clays to dry/wet scCO2 (H2O-rich) fluids at T and P encountered in typical aquifers. Our main findings for hydrated STx-1 are that desiccation occurs spontaneously on the scale of minutes-hours over a wide range of conditions in dry scCO2 via release of H2O with volume changes as large as 19% in relation to the initial volume. Desiccation was not observed in wet scCO2, or in corresponding saline solutions containing 1-3 M NaCl, but quenching to ambient conditions from low-pressures leads to re-hydration in STx-1 suggesting a pressure-dependent diffusion barrier for H2O from the clay into bulk scCO2. Similar desiccation transitions with smaller volume changes of 5-9% were also observed in SWy-1 at P 140 atm and T 40 C. At high pressures ( 200 atm) minor lamellar expansion was sometimes found in STx-1 suggesting the possible intercalation of CO2. Our diffraction studies reveal an intriguing relationship between the critical dehydration temperatures and pressures, with bounds defined by critical properties of CO2.

Reuse of wastewater sludge with marine clay as a new resource of construction aggregates.

PubMed

Tay, J H; Show, K Y; Lee, D J; Hong, S Y

2004-01-01

The disposal of sludge from wastewater treatment presents highly complex problems to any municipality. Most of the sludge disposal methods have varying degrees of environmental impact. Hence, it is necessary to explore potential areas of reuse in order to alleviate sludge disposal problems and to conserve natural resources. Industrial sludge and marine clay are two forms of high-volume wastes. Using these wastes as a resource of raw materials to produce construction aggregates would enable large-scale sludge reuse. The aggregates were produced at various sludge-clay combinations containing 0, 20, 50, 80 and 100% clay contents, respectively. The pelletized aggregates displayed lower particle densities ranged between 1.48 and 2.25 g/cm3, compared to the density of granite at 2.56 g/cm3. Good 28-day concrete compressive strength of 38.5 N/mm2 achieved by the 100% sludge aggregate was comparable to the value of 38.0 N/mm2 achieved of the granite control specimens. The leachate contamination levels from the aggregates after 150 days were found acceptable when used in concrete, indicating insignificant environmental contamination. The heat flow study showed increases in heat flow at the temperatures of 480 degrees C and between 660 degrees C and 900 degrees C, indicating a need for the extension of heating time around these temperatures.

Satellite Remote Sensing For Aluminum And Nickel Laterites

NASA Astrophysics Data System (ADS)

Henderson, Frederick B.; Penfield, Glen T.; Grubbs, Donald K.

1984-08-01

The new LANDSAT-4,-5/Thematic Mapper (TM) land observational satellite remote sensing systems are providing dramatically new and important short wave infrared (SWIR) data, which combined with Landsat's Multi-Spectral Scanner (MSS) visible (VIS), very near infrared (VNIR), and thermal infrared (TI) data greatly improves regional geological mapping on a global scale. The TM will significantly improve clay, iron oxide, aluminum, and nickel laterite mapping capabilities over large areas of the world. It will also improve the ability to discriminate vegetation stress and species distribution associated with lateritic environments. Nickel laterites on Gag Island, Indonesia are defined by MSS imagery. Satellite imagery of the Cape Bougainville and the Darling Range, Australia bauxite deposits show the potential use of MSS data for exploration and mining applications. Examples of satellite syn-thetic aperture radar (SAR) for Jamaica document the use of this method for bauxite exploration. Thematic Mapper data will be combined with the French SPOT satellite's high spatial resolution and stereoscopic digital data, and U.S., Japanese, European, and Canadian Synthetic Aperture Radar (SAR) data to assist with logistics, mine development, and environ-mental concerns associated with aluminum and nickel lateritic deposits worldwide.

Towards large scale multi-target tracking

NASA Astrophysics Data System (ADS)

Vo, Ba-Ngu; Vo, Ba-Tuong; Reuter, Stephan; Lam, Quang; Dietmayer, Klaus

2014-06-01

Multi-target tracking is intrinsically an NP-hard problem and the complexity of multi-target tracking solutions usually do not scale gracefully with problem size. Multi-target tracking for on-line applications involving a large number of targets is extremely challenging. This article demonstrates the capability of the random finite set approach to provide large scale multi-target tracking algorithms. In particular it is shown that an approximate filter known as the labeled multi-Bernoulli filter can simultaneously track one thousand five hundred targets in clutter on a standard laptop computer.

Hydrogeology of the Southeastern Coastal Plain aquifer system in Mississippi, Alabama, Georgia, and South Carolina

USGS Publications Warehouse

Renken, Robert A.

1996-01-01

The Southeastern Coastal Plain aquifer system consists of a thick sequence of unconsolidated to poorly consolidated Cretaceous and Tertiary rocks that extend from Mississippi to South Carolina. Four regional sand and gravel aquifers are separated by three regional confining units of clay, shale, and chalk that do not conform everywhere to stratigraphic boundaries. The change in geologic facies is the most important factor controlling the distribution of transmissivity within the aquifer system.

Multi-Harmony: detecting functional specificity from sequence alignment

PubMed Central

Brandt, Bernd W.; Feenstra, K. Anton; Heringa, Jaap

2010-01-01

Many protein families contain sub-families with functional specialization, such as binding different ligands or being involved in different protein–protein interactions. A small number of amino acids generally determine functional specificity. The identification of these residues can aid the understanding of protein function and help finding targets for experimental analysis. Here, we present multi-Harmony, an interactive web sever for detecting sub-type-specific sites in proteins starting from a multiple sequence alignment. Combining our Sequence Harmony (SH) and multi-Relief (mR) methods in one web server allows simultaneous analysis and comparison of specificity residues; furthermore, both methods have been significantly improved and extended. SH has been extended to cope with more than two sub-groups. mR has been changed from a sampling implementation to a deterministic one, making it more consistent and user friendly. For both methods Z-scores are reported. The multi-Harmony web server produces a dynamic output page, which includes interactive connections to the Jalview and Jmol applets, thereby allowing interactive analysis of the results. Multi-Harmony is available at http://www.ibi.vu.nl/ programs/shmrwww. PMID:20525785