The Calibration of the DSCOVR EPIC Multiple Visible Channel Instrument Using MODIS and VIIRS as a Reference

NASA Technical Reports Server (NTRS)

Haney, Conor; Doeling, David; Minnis, Patrick; Bhatt, Rajendra; Scarino, Benjamin; Gopalan, Arun

2016-01-01

The Deep Space Climate Observatory (DSCOVR), launched on 11 February 2015, is a satellite positioned near the Lagrange-1 (L1) point, carrying several instruments that monitor space weather, and Earth-view sensors designed for climate studies. The Earth Polychromatic Imaging Camera (EPIC) onboard DSCOVR continuously views the sun-illuminated portion of the Earth with spectral coverage in the UV, VIS, and NIR bands. Although the EPIC instrument does not have any onboard calibration abilities, its constant view of the sunlit Earth disk provides a unique opportunity for simultaneous viewing with several other satellite instruments. This arrangement allows the EPIC sensor to be inter-calibrated using other well-characterized satellite instrument reference standards. Two such instruments with onboard calibration are MODIS, flown on Aqua and Terra, and VIIRS, onboard Suomi-NPP. The MODIS and VIIRS reference calibrations will be transferred to the EPIC instrument using both all-sky ocean and deep convective clouds (DCC) ray-matched EPIC and MODIS/VIIRS radiance pairs. An automated navigation correction routine was developed to more accurately align the EPIC and MODIS/VIIRS granules. The automated navigation correction routine dramatically reduced the uncertainty of the resulting calibration gain based on the EPIC and MODIS/VIIRS radiance pairs. The SCIAMACHY-based spectral band adjustment factors (SBAF) applied to the MODIS/ VIIRS radiances were found to successfully adjust the reference radiances to the spectral response of the specific EPIC channel for over-lapping spectral channels. The SBAF was also found to be effective for the non-overlapping EPIC channel 10. Lastly, both ray-matching techniques found no discernable trends for EPIC channel 7 over the year of publically released EPIC data.

Preparing the EPIC Model for Evaluating Bioenergy Production Systems: A Test of the Denitrification Submodel using a Long-Term Dataset

NASA Astrophysics Data System (ADS)

Manowitz, D. H.; Schwab, D. E.; Izaurralde, R. C.

2010-12-01

As bioenergy production continues to increase, it is important to be able to predict not only the crop yields that are expected from future production, but also the various environmental impacts that will accompany it. Therefore, models that can be used to make such predictions must be validated against as many of these agricultural outputs as possible. The Environmental Policy Integrated Climate (EPIC) model is a widely used and tested model for simulating many agricultural ecosystem processes including plant growth, crop yield, carbon and nutrient cycling, wind and water erosion, runoff, leaching, as well as changes in soil physical and chemical properties. This model has undergone many improvements, including the addition of a process-based denitrification submodel. Here we evaluate the performance of EPIC in its ability to simulate nitrous oxide (N2O) fluxes and related variables as observed in selected treatments of the Long-Term Ecological Research (LTER) cropping systems study at Kellogg Biological Station (KBS). We will provide a brief description of the EPIC model in the context of bioenergy production, describe the denitrification submodel, and compare simulated and observed values of crop yields, N2O emissions, soil carbon dynamics, and soil moisture.

USDA Collaboration with EPA/ORD

EPA Science Inventory

For more than seven years, EPA scientists have been leveraging the USDA Environmental Policy Integrated Climate (EPIC) model to reduce uncertainty in our estimates of agricultural emissions, ambient PM concentrations and subsequent human exposure risk. This presentation summariz...

Enhancements to an Agriculture-land Modeling System - FEST-C and Its Applications

EPA Science Inventory

The Fertilizer Emission Scenario Tool for CMAQ (FEST-C) system was originally developed to simulate daily fertilizer application information using the Environmental Policy Integrated Climate (EPIC) model across any defined CMAQ conterminous United States (U.S.) CMAQ domain and gr...

Modelling methane fluxes from managed and restored peatlands

NASA Astrophysics Data System (ADS)

Cresto Aleina, F.; Rasche, L.; Hermans, R.; Subke, J. A.; Schneider, U. A.; Brovkin, V.

2015-12-01

European peatlands have been extensively managed over past centuries. Typical management activities consisted of drainage and afforestation, which lead to considerable damage to the peat and potentially significant carbon loss. Recent efforts to restore previously managed peatlands have been carried out throughout Europe. These restoration efforts have direct implications for water table depth and greenhouse gas emissions, thus impacting on the ecosystem services provided by peatland areas. In order to quantify the impact of peatland restoration on water table depth and greenhouse gas budget, We coupled the Environmental Policy Integrated Climate (EPIC) model to a process-based model for methane emissions (Walter and Heimann, 2000). The new model (EPIC-M) can potentially be applied at the European and even at the global scale, but it is yet to be tested and evaluated. We present results of this new tool from different peatlands in the Flow Country, Scotland. Large parts of the peatlands of the region have been drained and afforested during the 1980s, but since the late 1990s, programs to restore peatlands in the Flow Country have been enforced. This region offers therefore a range of peatlands, from near pristine, to afforested and drained, with different resoration ages in between, where we can apply the EPIC-M model and validate it against experimental data from all land stages of restoration. Goals of this study are to evaluate the EPIC-M model and its performances against in situ measurements of methane emissions and water table changes in drained peatlands and in restored ones. Secondly, our purpose is to study the environmental impact of peatland restoration, including methane emissions, due to the rewetting of drained surfaces. To do so, we forced the EPIC-M model with local meteorological and soil data, and simulated soil temperatures, water table dynamics, and greenhouse gas emissions. This is the first step towards a European-wide application of the EPIC-M model for the assessment of the environmental impact of peatland restoration.

Modeling water table dynamics in managed and restored peatlands

NASA Astrophysics Data System (ADS)

Cresto Aleina, Fabio; Rasche, Livia; Hermans, Renée; Subke, Jens-Arne; Schneider, Uwe; Brovkin, Victor

2016-04-01

European peatlands have been extensively managed over past centuries. Typical management activities consisted of drainage and afforestation, which lead to considerable damage to the peat and potentially significant carbon loss. Recent efforts to restore previously managed peatlands have been carried out throughout Europe. These restoration efforts have direct implications for water table depth and greenhouse gas emissions, thus impacting on the ecosystem services provided by peatland areas. In order to quantify the impact of peatland restoration on water table depth and greenhouse gas budget, We coupled the Environmental Policy Integrated Climate (EPIC) model to a process-based model for methane emissions (Walter and Heimann, 2000). The new model (EPIC-M) can potentially be applied at the European and even at the global scale, but it is yet to be tested and evaluated. We present results of this new tool from different peatlands in the Flow Country, Scotland. Large parts of the peatlands of the region have been drained and afforested during the 1980s, but since the late 1990s, programs to restore peatlands in the Flow Country have been enforced. This region offers therefore a range of peatlands, from near pristine, to afforested and drained, with different resoration ages in between, where we can apply the EPIC-M model and validate it against experimental data from all land stages of restoration Goals of this study are to evaluate the EPIC-M model and its performances against in situ measurements of methane emissions and water table changes in drained peatlands and in restored ones. Secondly, our purpose is to study the environmental impact of peatland restoration, including methane emissions, due to the rewetting of drained surfaces. To do so, we forced the EPIC-M model with local meteorological and soil data, and simulated soil temperatures, water table dynamics, and greenhouse gas emissions. This is the first step towards a European-wide application of the EPIC-M model for the assessment of the environmental impact of peatland restoration.

Sensitivity of North American agriculture to ENSO-based climate scenarios and their socio-economic consequences: Modeling in an integrated assessment framework

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rosenberg, N.J.; Izaurralde, R.C.; Brown, R.A.

1997-09-01

A group of Canadian, US and Mexican natural resource specialists, organized by the Pacific Northwest National Laboratory (PNNL) under its North American Energy, Environment and Economy (NA3E) Program, has applied a simulation modeling approach to estimating the impact of ENSO-driven climatic variations on the productivity of major crops grown in the three countries. Methodological development is described and results of the simulations presented in this report. EPIC (the Erosion Productivity Impact Calculator) was the agro-ecosystem model selected-for this study. EPIC uses a daily time step to simulate crop growth and yield, water use, runoff and soil erosion among other variables.more » The model was applied to a set of so-called representative farms parameterized through a specially-assembled Geographic Information System (GIS) to reflect the soils, topography, crop management and weather typical of the regions represented. Fifty one representative farms were developed for Canada, 66 for the US and 23 for Mexico. El Nino-Southern Oscillation (ENSO) scenarios for the EPIC simulations were created using the historic record of sea-surface temperature (SST) prevailing in the eastern tropical Pacific for the period October 1--September 30. Each year between 1960 and 1989 was thus assigned to an ENSO category or state. The ENSO states were defined as El Nino (EN, SST warmer than the long-term mean), Strong El Nino (SEN, much warmer), El Viejo (EV, cooler) and Neutral (within {+-}0.5 C of the long-term mean). Monthly means of temperature and precipitation were then calculated at each farm for the period 1960--1989 and the differences (or anomalies) between the means in Neutral years and EN, SEN and EV years determined. The average monthly anomalies for each ENSO state were then used to create new monthly statistics for each farm and ENSO-state combination. The adjusted monthly statistics characteristic of each ENSO state were then used to drive a stochastic-weather simulator that provided 30 years of daily-weather data needed to run EPIC. Maps and tables of the climate anomalies by farm show climatic conditions that differ considerably by region, season and ENSO state.« less

Analyzing and modelling the effect of long-term fertilizer management on crop yield and soil organic carbon in China.

PubMed

Zhang, Jie; Balkovič, Juraj; Azevedo, Ligia B; Skalský, Rastislav; Bouwman, Alexander F; Xu, Guang; Wang, Jinzhou; Xu, Minggang; Yu, Chaoqing

2018-06-15

This study analyzes the influence of various fertilizer management practices on crop yield and soil organic carbon (SOC) based on the long-term field observations and modelling. Data covering 11 years from 8 long-term field trials were included, representing a range of typical soil, climate, and agro-ecosystems in China. The process-based model EPIC (Environmental Policy Integrated Climate model) was used to simulate the response of crop yield and SOC to various fertilization regimes. The results showed that the yield and SOC under additional manure application treatment were the highest while the yield under control treatment was the lowest (30%-50% of NPK yield) at all sites. The SOC in northern sites appeared more dynamic than that in southern sites. The variance partitioning analysis (VPA) showed more variance of crop yield could be explained by the fertilization factor (42%), including synthetic nitrogen (N), phosphorus (P), potassium (K) fertilizers, and fertilizer NPK combined with manure. The interactive influence of soil (total N, P, K, and available N, P, K) and climate factors (mean annual temperature and precipitation) determine the largest part of the SOC variance (32%). EPIC performs well in simulating both the dynamics of crop yield (NRMSE = 32% and 31% for yield calibration and validation) and SOC (NRMSE = 13% and 19% for SOC calibration and validation) under diverse fertilization practices in China. EPIC can assist in predicting the impacts of different fertilization regimes on crop growth and soil carbon dynamics, and contribute to the optimization of fertilizer management for different areas in China. Copyright © 2018. Published by Elsevier B.V.

DSCOVR_EPIC_L2_CLOUD_01

Atmospheric Science Data Center

2018-06-20

... V1 Level:  L2 Platform:  DEEP SPACE CLIMATE OBSERVATORY Instrument:  Enhanced Polychromatic ... assuming ice phase Cloud Optical Thickness – assuming liquid phase EPIC Cloud Mask Oxygen A-band Cloud Effective Height (in ...

EPIC Radiance Simulator for Deep Space Climate ObserVatoRy (DSCOVR)

NASA Technical Reports Server (NTRS)

Lyapustin, Alexei; Marshak, Alexander; Wang, Yujie; Korkin, Sergey; Herman, Jay

2011-01-01

The Deep Space Climate ObserVatoRy (DSCOVR) is a planned space weather mission for the Sun and Earth observations from the Lagrangian L1 point. Onboard of DSCOVR is a multispectral imager EPIC designed for unique observations of the full illuminated disk of the Earth with high temporal and 10 km spatial resolution. Depending on latitude, EPIC will observe the same Earth surface area during the course of the day in a wide range of solar and view zenith angles in the backscattering view geometry with the scattering angle of 164-172 . To understand the information content of EPIC data for analysis of the Earth clouds, aerosols and surface properties, an EPIC radiance Simulator was developed covering the UV -VIS-NIR range including the oxygen A and B-bands (A=340, 388, 443, 555, 680, 779.5, 687.7, 763.3 nm). The Simulator uses ancillary data (surface pressure/height, NCEP wind speed) as well as MODIS-based geophysical fields such as spectral surface bidirectional reflectance, column water vapor, and properties of aerosols and clouds including optical depth, effective radius, phase and cloud top height. The original simulations are conducted at 1 km resolution using the look-up table approach and then are averaged to 10 km EPIC radiances. This talk will give an overview of the EPIC Simulator with analysis of results over the continental USA and northern Atlantic.

Vulnerability of Thai rice production to simultaneous climate and socioeconomic changes: a double exposure analysis

NASA Astrophysics Data System (ADS)

Sangpenchan, R.

2011-12-01

This research explores the vulnerability of Thai rice production to simultaneous exposure by climate and socioeconomic change -- so-called "double exposure." Both processes influence Thailand's rice production system, but the vulnerabilities associated with their interactions are unknown. To understand this double exposure, I adopts a mixed-method, qualitative-quantitative analytical approach consisting of three phases of analysis involving a Vulnerability Scoping Diagram, a Principal Component Analysis, and the EPIC crop model using proxy datasets collected from secondary data sources at provincial scales.The first and second phases identify key variables representing each of the three dimensions of vulnerability -- exposure, sensitivity, and adaptive capacity indicating that the greatest vulnerability in the rice production system occurs in households and areas with high exposure to climate change, high sensitivity to climate and socioeconomic stress, and low adaptive capacity. In the third phase, the EPIC crop model simulates rice yields associated with future climate change projected by CSIRO and MIROC climate models. Climate change-only scenarios project the decrease in yields by 10% from the current productivity during 2016-2025 and 30% during 2045-2054. Scenarios applying both climate change and improved technology and management practices show that a 50% increase in rice production is possible, but requires strong collaboration between sectors to advance agricultural research and technology and requires strong adaptive capacity in the rice production system characterized by well-developed social capital, social networks, financial capacity, and infrastructure and household mobility at the local scale. The vulnerability assessment and climate and crop adaptation simulations used here provide useful information to decision makers developing vulnerability reduction plans in the face of concurrent climate and socioeconomic change.

Radiative Transfer Model for Operational Retrieval of Cloud Parameters from DSCOVR-EPIC Measurements

NASA Astrophysics Data System (ADS)

Yang, Y.; Molina Garcia, V.; Doicu, A.; Loyola, D. G.

2016-12-01

The Earth Polychromatic Imaging Camera (EPIC) onboard the Deep Space Climate Observatory (DSCOVR) measures the radiance in the backscattering region. To make sure that all details in the backward glory are covered, a large number of streams is required by a standard radiative transfer model based on the discrete ordinates method. Even the use of the delta-M scaling and the TMS correction do not substantially reduce the number of streams. The aim of this work is to analyze the capability of a fast radiative transfer model to retrieve operationally cloud parameters from EPIC measurements. The radiative transfer model combines the discrete ordinates method with matrix exponential for the computation of radiances and the matrix operator method for the calculation of the reflection and transmission matrices. Standard acceleration techniques as, for instance, the use of the normalized right and left eigenvectors, telescoping technique, Pade approximation and successive-order-of-scattering approximation are implemented. In addition, the model may compute the reflection matrix of the cloud by means of the asymptotic theory, and may use the equivalent Lambertian cloud model. The various approximations are analyzed from the point of view of efficiency and accuracy.

Ensembles modeling approach to study Climate Change impacts on Wheat

NASA Astrophysics Data System (ADS)

Ahmed, Mukhtar; Claudio, Stöckle O.; Nelson, Roger; Higgins, Stewart

2017-04-01

Simulations of crop yield under climate variability are subject to uncertainties, and quantification of such uncertainties is essential for effective use of projected results in adaptation and mitigation strategies. In this study we evaluated the uncertainties related to crop-climate models using five crop growth simulation models (CropSyst, APSIM, DSSAT, STICS and EPIC) and 14 general circulation models (GCMs) for 2 representative concentration pathways (RCP) of atmospheric CO2 (4.5 and 8.5 W m-2) in the Pacific Northwest (PNW), USA. The aim was to assess how different process-based crop models could be used accurately for estimation of winter wheat growth, development and yield. Firstly, all models were calibrated for high rainfall, medium rainfall, low rainfall and irrigated sites in the PNW using 1979-2010 as the baseline period. Response variables were related to farm management and soil properties, and included crop phenology, leaf area index (LAI), biomass and grain yield of winter wheat. All five models were run from 2000 to 2100 using the 14 GCMs and 2 RCPs to evaluate the effect of future climate (rainfall, temperature and CO2) on winter wheat phenology, LAI, biomass, grain yield and harvest index. Simulated time to flowering and maturity was reduced in all models except EPIC with some level of uncertainty. All models generally predicted an increase in biomass and grain yield under elevated CO2 but this effect was more prominent under rainfed conditions than irrigation. However, there was uncertainty in the simulation of crop phenology, biomass and grain yield under 14 GCMs during three prediction periods (2030, 2050 and 2070). We concluded that to improve accuracy and consistency in simulating wheat growth dynamics and yield under a changing climate, a multimodel ensemble approach should be used.

Estimation of Canopy Sunlit Fraction of Leaf Area from Ground-Based Measurements

NASA Astrophysics Data System (ADS)

Yang, B.; Knyazikhin, Y.; Yan, K.; Chen, C.; Park, T.; CHOI, S.; Mottus, M.; Rautiainen, M.; Stenberg, P.; Myneni, R.; Yan, L.

2015-12-01

The sunlit fraction of leaf area (SFLA) defined as the fraction of the total hemisurface leaf area illuminated by the direct solar beam is a key structural variable in many global models of climate, hydrology, biogeochemistry and ecology. SFLAI is expected to be a standard product from the Earth Polychromatic Imaging Camera (EPIC) on board the joint NOAA, NASA and US Air Force Deep Space Climate Observatory (DSCOVR) mission, which was successfully launched from Cape Canaveral, Florida on February 11, 2015. The DSCOVR EPIC sensor orbiting the Sun-Earth Lagrange L1 point provides multispectral measurements of the radiation reflected by Earth in retro-illumination directions. This poster discusses a methodology for estimating the SFLA using LAI-2000 Canopy Analyzer, which is expected to underlie the strategy for validation of the DSCOVR EPIC land surface products. LAI-2000 data collected over 18 coniferous and broadleaf sites in Hyytiälä, Central Finland, were used to estimate the SFLA. Field data on canopy geometry were used to simulate selected sites. Their SFLAI was calculated using a Monte Carlo (MC) technique. LAI-2000 estimates of SFLA showed a very good agreement with MC results, suggesting validity of the proposed approach.

Deep Space Earth Observations from DSCOVR

NASA Astrophysics Data System (ADS)

Marshak, A.; Herman, J.

2018-02-01

The Deep Space Climate Observatory (DSCOVR) at Sun-Earth L1 orbit observes the full sunlit disk of Earth. There are two Earth science instruments on board DSCOVR — EPIC and NISTAR. We discuss if EPIC and NISAR-like instruments can be used in Deep Space Gateway.

Development of multi-sensor global cloud and radiance composites for earth radiation budget monitoring from DSCOVR

NASA Astrophysics Data System (ADS)

Khlopenkov, Konstantin; Duda, David; Thieman, Mandana; Minnis, Patrick; Su, Wenying; Bedka, Kristopher

2017-10-01

The Deep Space Climate Observatory (DSCOVR) enables analysis of the daytime Earth radiation budget via the onboard Earth Polychromatic Imaging Camera (EPIC) and National Institute of Standards and Technology Advanced Radiometer (NISTAR). Radiance observations and cloud property retrievals from low earth orbit and geostationary satellite imagers have to be co-located with EPIC pixels to provide scene identification in order to select anisotropic directional models needed to calculate shortwave and longwave fluxes. A new algorithm is proposed for optimal merging of selected radiances and cloud properties derived from multiple satellite imagers to obtain seamless global hourly composites at 5-km resolution. An aggregated rating is employed to incorporate several factors and to select the best observation at the time nearest to the EPIC measurement. Spatial accuracy is improved using inverse mapping with gradient search during reprojection and bicubic interpolation for pixel resampling. The composite data are subsequently remapped into EPIC-view domain by convolving composite pixels with the EPIC point spread function defined with a half-pixel accuracy. PSF-weighted average radiances and cloud properties are computed separately for each cloud phase. The algorithm has demonstrated contiguous global coverage for any requested time of day with a temporal lag of under 2 hours in over 95% of the globe.

Development of Multi-Sensor Global Cloud and Radiance Composites for Earth Radiation Budget Monitoring from DSCOVR

NASA Technical Reports Server (NTRS)

Khlopenkov, Konstantin; Duda, David; Thieman, Mandana; Minnis, Patrick; Su, Wenying; Bedka, Kristopher

2017-01-01

The Deep Space Climate Observatory (DSCOVR) enables analysis of the daytime Earth radiation budget via the onboard Earth Polychromatic Imaging Camera (EPIC) and National Institute of Standards and Technology Advanced Radiometer (NISTAR). Radiance observations and cloud property retrievals from low earth orbit and geostationary satellite imagers have to be co-located with EPIC pixels to provide scene identification in order to select anisotropic directional models needed to calculate shortwave and longwave fluxes. A new algorithm is proposed for optimal merging of selected radiances and cloud properties derived from multiple satellite imagers to obtain seamless global hourly composites at 5-kilometer resolution. An aggregated rating is employed to incorporate several factors and to select the best observation at the time nearest to the EPIC measurement. Spatial accuracy is improved using inverse mapping with gradient search during reprojection and bicubic interpolation for pixel resampling. The composite data are subsequently remapped into EPIC-view domain by convolving composite pixels with the EPIC point spread function (PSF) defined with a half-pixel accuracy. PSF-weighted average radiances and cloud properties are computed separately for each cloud phase. The algorithm has demonstrated contiguous global coverage for any requested time of day with a temporal lag of under 2 hours in over 95 percent of the globe.

First observations of volcanic eruption clouds from L1 by DSCOVR/EPIC

NASA Astrophysics Data System (ADS)

Carn, S. A.; Krotkov, N. A.; Taylor, S.; Fisher, B. L.; Li, C.; Hughes, E. J.; Bhartia, P. K.; Prata, F.

2016-12-01

Volcanic emissions of sulfur dioxide (SO2) and ash have been measured by ultraviolet (UV) sensors on US and European polar-orbiting satellites since the late 1970s. Although successful, the main limitation of these UV observations from low-Earth orbit has been poor temporal resolution. Timeliness can be crucial when detecting hazardous volcanic eruption clouds that threaten aviation, and most operational geostationary satellites cannot detect SO2, a key tracer of volcanic plumes. In 2015, the launch of the Earth Polychromatic Imaging Camera (EPIC) aboard the Deep Space Climate Observatory (DSCOVR) provided the first opportunity to observe volcanic clouds from the L1 Lagrange point. EPIC is a 10-band spectroradiometer spanning UV to near-IR wavelengths with two UV channels sensitive to SO2, and a ground resolution of 25 km. The unique L1 vantage point provides continuous observations of the sunlit Earth disk, potentially offering multiple daily observations of volcanic SO2 and ash clouds in the EPIC field of view. When coupled with complementary retrievals from polar-orbiting UV and infrared (IR) sensors such as the Ozone Monitoring Instrument (OMI), the Ozone Mapping and Profiler Suite (OMPS), and the Atmospheric Infrared Sounder (AIRS), the increased observation frequency afforded by DSCOVR/EPIC will permit more timely volcanic eruption detection, improved trajectory modeling, and novel analyses of the temporal evolution of volcanic clouds. We demonstrate the sensitivity of EPIC UV radiances to volcanic clouds using examples from the first year of EPIC observations including the December 2015 paroxysmal eruption of Etna volcano (Italy). When combined with OMI and OMPS measurements, the EPIC SO2 data permit hourly tracking of the Etna eruption cloud as it drifts away from the volcano. We also describe ongoing efforts to adapt existing UV backscatter (BUV) algorithms to produce operational EPIC SO2 and Ash Index (AI) products.

A Systems Approach to the Estimation of Ecosystem and Human Health Stressors in Air, Land and Water

NASA Astrophysics Data System (ADS)

Cooter, E. J.; Dennis, R. L.; Bash, J. O.

2013-12-01

Nitrogen (N) and sulfur oxides (SOx) in air, land and water media are parts of tightly coupled geophysical systems resulting in multiple routes for human and ecosystem exposure. For instance, excess forms of total reactive N in water can lead to harmful algal blooms, with the depletion of oxygen and adverse impacts to aquatic ecosystem productivity in coastal estuaries. Acidic deposition can result in lost forest productivity for terrestrial ecosystem and impacts to trout and other fishery resources in inland waters. Human pulmonary health can be impaired when N and SOx in the atmosphere lead to the generation of ozone and particulate matter (PM). Atmospheric N deposition can also contribute to eutrophication of drinking water sources. The U.S. Environmental Protection Agency (USEPA) Office of Research and Development (ORD) has embarked on the development of a multi-media 'one environment' systems approach to these issues to help develop management decisions that create win-win policies. The purpose of this project is to develop a 'one environment' set of models that can inform protection of ecosystems and human health in both the current state and under future climate scenarios. The research framework focuses on three interrelated themes; coupling air quality with land use and agricultural land management, connecting the hydrosphere (i.e., coupling meteorology and hydrology) and linking the air/land/hydrosphere with ecosystem models and benefits models. We will present an overall modeling framework and then move to the presentation of on-going research results related to direct linkage of air quality with land use and agricultural land management. A modeling interface system has been developed that facilitates the simulation of field-scale agricultural land management decisions over a gridded domain at multiple grid resolutions for the Contiguous United States (CONUS) using a modified version of the USDA EPIC (Environmental Policy Integrated Climate) model. EPIC is a field-scale semi-empirical biogeochemical process model that operates on a daily time step. Options have been added to the CMAQ (Community Multi-Scale Air Quality) model to simulate bidirectional flux of ammonia that require the temporally and spatially detailed information produced by the combined FEST-C (Fertilizer Emissions Scenario Tool for CMAQ) and EPIC system (FEST-C/EPIC). An example of improved estimates of wet and dry atmospheric N deposition and ambient PM concentrations that result from coupling these two models using a common simulated meteorology will be presented. The biogeochemistry in EPIC also allows us to explore the potential co-benefits and unanticipated outcomes of changing atmospheric deposition in response to regulated emissions, management or climate changes on field-scale N balances and N export in surface runoff, lateral flow, and in percolation or as attached to particles leaving the field surface. An illustrative example of N status response to select atmospheric deposition changes will be presented. Methods are also outlined for further combining these results with hydrologic models such as SWAT (Soil and Water Assessment Tool) and the NEWS (Nutrient Export from WaterSheds) model.

Calibration of the DSCOVR EPIC Visible and NIR Channels using MODIS Terra and Aqua Data and EPIC Lunar Observations

NASA Technical Reports Server (NTRS)

Geogdzhayev, Igor V.; Marshak, Alexander

2018-01-01

The unique position of the Deep Space Climate Observatory (DSCOVR) Earth Polychromatic Imaging Camera (EPIC) at the Lagrange 1 point makes an important addition to the data from currently operating low Earth orbit observing instruments. EPIC instrument does not have an onboard calibration facility. One approach to its calibration is to compare EPIC observations to the measurements from polar-orbiting radiometers. Moderate Resolution Imaging Spectroradiometer (MODIS) is a natural choice for such comparison due to its well-established calibration record and wide use in remote sensing. We use MODIS Aqua and Terra L1B 1km reflectances to infer calibration coefficients for four EPIC visible and NIR channels: 443, 551, 680 and 780 nm. MODIS and EPIC measurements made between June 2015 and 2016 are employed for comparison. We first identify favorable MODIS pixels with scattering angle matching temporarily collocated EPIC observations. Each EPIC pixel is then spatially collocated to a subset of the favorable MODIS pixels within 25 km radius. Standard deviation of the selected MODIS pixels as well as of the adjacent EPIC pixels is used to find the most homogeneous scenes. These scenes are then used to determine calibration coefficients using a linear regression between EPIC counts/sec and reflectances in the close MODIS spectral channels. We present thus inferred EPIC calibration coefficients and discuss sources of uncertainties. The lunar EPIC observations are used to calibrate EPIC O2 absorbing channels (688 and 764 nm), assuming that there is a small difference between moon reflectances separated by approx.10 nm in wavelength provided the calibration factors of the red (680 nm) and near-IR (780 nm) are known from comparison between EPIC and MODIS.

National Scale Prediction of Soil Carbon Sequestration under Scenarios of Climate Change

NASA Astrophysics Data System (ADS)

Izaurralde, R. C.; Thomson, A. M.; Potter, S. R.; Atwood, J. D.; Williams, J. R.

2006-12-01

Carbon sequestration in agricultural soils is gaining momentum as a tool to mitigate the rate of increase of atmospheric CO2. Researchers from the Pacific Northwest National Laboratory, Texas A&M University, and USDA-NRCS used the EPIC model to develop national-scale predictions of soil carbon sequestration with adoption of no till (NT) under scenarios of climate change. In its current form, the EPIC model simulates soil C changes resulting from heterotrophic respiration and wind / water erosion. Representative modeling units were created to capture the climate, soil, and management variability at the 8-digit hydrologic unit (USGS classification) watershed scale. The soils selected represented at least 70% of the variability within each watershed. This resulted in 7,540 representative modeling units for 1,412 watersheds. Each watershed was assigned a major crop system: corn, soybean, spring wheat, winter wheat, cotton, hay, alfalfa, corn-soybean rotation or wheat-fallow rotation based on information from the National Resource Inventory. Each representative farm was simulated with conventional tillage and no tillage, and with and without irrigation. Climate change scenarios for two future periods (2015-2045 and 2045-2075) were selected from GCM model runs using the IPCC SRES scenarios of A2 and B2 from the UK Hadley Center (HadCM3) and US DOE PCM (PCM) models. Changes in mean and standard deviation of monthly temperature and precipitation were extracted from gridded files and applied to baseline climate (1960-1990) for each of the 1,412 modeled watersheds. Modeled crop yields were validated against historical USDA NASS county yields (1960-1990). The HadCM3 model predicted the most severe changes in climate parameters. Overall, there would be little difference between the A2 and B2 scenarios. Carbon offsets were calculated as the difference in soil C change between conventional and no till. Overall, C offsets during the first 30-y period (513 Tg C) are predicted to be 36% higher than those predicted during the second period. The climate projections of the PCM model had more positive impact on soil C sequestration than those predicted with the HadCM3 model.

Climate Change Impacts for the Conterminous USA: An Integrated Assessment Part 7. Economic Analysis of Field Crops and Land Use with Climate Change

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sands, Ronald D.; Edmonds, James A.

PNNL's Agriculture and Land Use (AgLU) model is used to demonstrate the impact of potential changes in climate on agricultural production and land use in the United States. AgLU simulates production of four crop types in several world regions, in 15-year time steps from 1990 to 2095. Changes in yield of major field crops in the United States, for 12 climate scenarios, are obtained from simulations of the EPIC crop growth model. Results from the HUMUS model are used to constrain crop irrigation, and the BIOME3 model is used to simulate productivity of unmanaged ecosystems. Assumptions about changes in agriculturalmore » productivity outside the United States are treated on a scenario basis, either responding in the same way as in the United States, or not responding to climate.« less

A Consistent EPIC Visible Channel Calibration Using VIIRS and MODIS as a Reference.

NASA Astrophysics Data System (ADS)

Haney, C.; Doelling, D. R.; Minnis, P.; Bhatt, R.; Scarino, B. R.; Gopalan, A.

2017-12-01

The Earth Polychromatic Imaging Camera (EPIC) aboard the Deep Space Climate Observatory (DSCOVR) satellite constantly images the sunlit disk of Earth from the Lagrange-1 (L1) point in 10 spectral channels spanning the UV, VIS, and NIR spectrums. Recently, the DSCOVR EPIC team has publicly released version 2 dataset, which has implemented improved navigation, stray-light correction, and flat-fielding of the CCD array. The EPIC 2-year data record must be well-calibrated for consistent cloud, aerosol, trace gas, land use and other retrievals. Because EPIC lacks onboard calibrators, the observations made by EPIC channels must be calibrated vicariously using the coincident measurements from radiometrically stable instruments that have onboard calibration systems. MODIS and VIIRS are best-suited instruments for this task as they contain similar spectral bands that are well-calibrated onboard using solar diffusers and lunar tracking. We have previously calibrated the EPIC version 1 dataset by using EPIC and VIIRS angularly matched radiance pairs over both all-sky ocean and deep convective clouds (DCC). We noted that the EPIC image required navigations adjustments, and that the EPIC stray-light correction provided an offset term closer to zero based on the linear regression of the EPIC and VIIRS ray-matched radiance pairs. We will evaluate the EPIC version 2 navigation and stray-light improvements using the same techniques. In addition, we will monitor the EPIC channel calibration over the two years for any temporal degradation or anomalous behavior. These two calibration methods will be further validated using desert and DCC invariant Earth targets. The radiometric characterization of the selected invariant targets is performed using multiple years of MODIS and VIIRS measurements. Results of these studies will be shown at the conference.

A Consistent EPIC Visible Channel Calibration using VIIRS and MODIS as a Reference

NASA Technical Reports Server (NTRS)

Haney, C. O.; Doelling, D. R.; Minnis, P.; Bhatt, R.; Scarino, B. R.; Gopalan, A.

2017-01-01

The Earth Polychromatic Imaging Camera (EPIC) aboard the Deep Space Climate Observatory (DSCOVR) satellite constantly images the sunlit disk of Earth from the Lagrange-1 (L1) point in 10 spectral channels spanning the UV, VIS, and NIR spectrums. Recently, the DSCOVR EPIC team has publicly released version 2 dataset, which has implemented improved navigation, stray-light correction, and flat-fielding of the CCD array. The EPIC 2-year data record must be well-calibrated for consistent cloud, aerosol, trace gas, land use and other retrievals. Because EPIC lacks onboard calibrators, the observations made by EPIC channels must be calibrated vicariously using the coincident measurements from radiometrically stable instruments that have onboard calibration systems. MODIS and VIIRS are best-suited instruments for this task as they contain similar spectral bands that are well-calibrated onboard using solar diffusers and lunar tracking. We have previously calibrated the EPIC version 1 dataset by using EPIC and VIIRS angularly matched radiance pairs over both all-sky ocean and deep convective clouds (DCC). We noted that the EPIC image required navigations adjustments, and that the EPIC stray-light correction provided an offset term closer to zero based on the linear regression of the EPIC and VIIRS ray-matched radiance pairs. We will evaluate the EPIC version 2 navigation and stray-light improvements using the same techniques. In addition, we will monitor the EPIC channel calibration over the two years for any temporal degradation or anomalous behavior. These two calibration methods will be further validated using desert and DCC invariant Earth targets. The radiometric characterization of the selected invariant targets is performed using multiple years of MODIS and VIIRS measurements. Results of these studies will be shown at the conference.

NASA's EPIC View of 2017 Eclipse Across America

NASA Image and Video Library

2017-08-22

From a million miles out in space, NASA’s Earth Polychromatic Imaging Camera (EPIC) captured natural color images of the moon’s shadow crossing over North America on Aug. 21, 2017. EPIC is aboard NOAA’s Deep Space Climate Observatory (DSCOVR), where it photographs the full sunlit side of Earth every day, giving it a unique view of total solar eclipses. EPIC normally takes about 20 to 22 images of Earth per day, so this animation appears to speed up the progression of the eclipse. To see the images of Earth every day, go to: epic.gsfc.nasa.gov NASA image use policy. NASA Goddard Space Flight Center enables NASA’s mission through four scientific endeavors: Earth Science, Heliophysics, Solar System Exploration, and Astrophysics. Goddard plays a leading role in NASA’s accomplishments by contributing compelling scientific knowledge to advance the Agency’s mission. Follow us on Twitter Like us on Facebook Find us on Instagram

A Biophysical Modeling Framework for Assessing the Environmental Impact of Biofuel Production

NASA Astrophysics Data System (ADS)

Zhang, X.; Izaurradle, C.; Manowitz, D.; West, T. O.; Post, W. M.; Thomson, A. M.; Nichols, J.; Bandaru, V.; Williams, J. R.

2009-12-01

Long-term sustainability of a biofuel economy necessitates environmentally friendly biofuel production systems. We describe a biophysical modeling framework developed to understand and quantify the environmental value and impact (e.g. water balance, nutrients balance, carbon balance, and soil quality) of different biomass cropping systems. This modeling framework consists of three major components: 1) a Geographic Information System (GIS) based data processing system, 2) a spatially-explicit biophysical modeling approach, and 3) a user friendly information distribution system. First, we developed a GIS to manage the large amount of geospatial data (e.g. climate, land use, soil, and hydrograhy) and extract input information for the biophysical model. Second, the Environmental Policy Integrated Climate (EPIC) biophysical model is used to predict the impact of various cropping systems and management intensities on productivity, water balance, and biogeochemical variables. Finally, a geo-database is developed to distribute the results of ecosystem service variables (e.g. net primary productivity, soil carbon balance, soil erosion, nitrogen and phosphorus losses, and N2O fluxes) simulated by EPIC for each spatial modeling unit online using PostgreSQL. We applied this framework in a Regional Intensive Management Area (RIMA) of 9 counties in Michigan. A total of 4,833 spatial units with relatively homogeneous biophysical properties were derived using SSURGO, Crop Data Layer, County, and 10-digit watershed boundaries. For each unit, EPIC was executed from 1980 to 2003 under 54 cropping scenarios (eg. corn, switchgrass, and hybrid poplar). The simulation results were compared with historical crop yields from USDA NASS. Spatial mapping of the results show high variability among different cropping scenarios in terms of the simulated ecosystem services variables. Overall, the framework developed in this study enables the incorporation of environmental factors into economic and life-cycle analysis in order to optimize biomass cropping production scenarios.

From precipitation to groundwater baseflow in a native prairie ecosystem: a regional study of the Konza LTER in the Flint Hills of Kansas, USA

USDA-ARS?s Scientific Manuscript database

Methods are developed to study hydrologic interactions across the surficial/groundwater interface in a native prairie ecosystem. Surficial ecohydrologic processes are simulated with the USDA’s EPIC model using daily climate data from the Kansas Weather Data Library, vegetation and soil data from the...

Modelling crop yield, soil organic C and P under variable long-term fertilizer management in China

NASA Astrophysics Data System (ADS)

Zhang, Jie; Xu, Guang; Xu, Minggang; Balkovič, Juraj; Azevedo, Ligia B.; Skalský, Rastislav; Wang, Jinzhou; Yu, Chaoqing

2016-04-01

Phosphorus (P) is a major limiting nutrient for plant growth. P, as a nonrenewable resource and the controlling factor of aquatic entrophication, is critical for food security and human future, and concerns sustainable resource use and environmental impacts. It is thus essential to find an integrated and effective approach to optimize phosphorus fertilizer application in the agro-ecosystem while maintaining crop yield and minimizing environmental risk. Crop P models have been used to simulate plant-soil interactions but are rarely validated with scattered long-term fertilizer control field experiments. We employed a process-based model named Environmental Policy Integrated Climate model (EPIC) to simulate grain yield, soil organic carbon (SOC) and soil available P based upon 8 field experiments in China with 11 years dataset, representing the typical Chinese soil types and agro-ecosystems of different regions. 4 treatments, including N, P, and K fertilizer (NPK), no fertilizer (CK), N and K fertilizer (NK) and N, P, K and manure (NPKM) were measured and modelled. A series of sensitivity tests were conducted to analyze the sensitivity of grain yields and soil available P to sequential fertilizer rates in typical humid, normal and drought years. Our results indicated that the EPIC model showed a significant agreement for simulating grain yields with R2=0.72, index of agreement (d)=0.87, modeling efficiency (EF)=0.68, p<0.01 and SOC with R2=0.70, d=0.86, EF=0.59, and p<0.01. EPIC can well simulate soil available P moderately and capture the temporal changes in soil P reservoirs. Both of Crop yields and soil available were found more sensitive to the fertilizer P rates in humid than drought year and soil available P is closely linked to concentrated rainfall. This study concludes that EPIC model has great potential to simulate the P cycle in croplands in China and can explore the optimum management practices.

Earth Reflectivity from Deep Space Climate Observatory (DSCOVR) Earth Polychromatic Camera (EPIC)

NASA Astrophysics Data System (ADS)

Song, W.; Knyazikhin, Y.; Wen, G.; Marshak, A.; Yan, G.; Mu, X.; Park, T.; Chen, C.; Xu, B.; Myneni, R. B.

2017-12-01

Earth reflectivity, which is also specified as Earth albedo or Earth reflectance, is defined as the fraction of incident solar radiation reflected back to space at the top of the atmosphere. It is a key climate parameter that describes climate forcing and associated response of the climate system. Satellite is one of the most efficient ways to measure earth reflectivity. Conventional polar orbit and geostationary satellites observe the Earth at a specific local solar time or monitor only a specific area of the Earth. For the first time, the NASA's Earth Polychromatic Imaging Camera (EPIC) onboard NOAA's Deep Space Climate Observatory (DSCOVR) collects simultaneously radiance data of the entire sunlit earth at 8 km resolution at nadir every 65 to 110 min. It provides reflectivity images in backscattering direction with the scattering angle between 168º and 176º at 10 narrow spectral bands in ultraviolet, visible, and near-Infrared (NIR) wavelengths. We estimate the Earth reflectivity using DSCOVR EPIC observations and analyze errors in Earth reflectivity due to sampling strategy of polar orbit Terra/Aqua MODIS and geostationary Goddard Earth Observing System-R series missions. We also provide estimates of contributions from ocean, clouds, land and vegetation to the Earth reflectivity. Graphic abstract shows enhanced RGB EPIC images of the Earth taken on July-24-2016 at 7:04GMT and 15:48 GMT. Parallel lines depict a 2330 km wide Aqua MODIS swath. The plot shows diurnal courses of mean Earth reflectance over the Aqua swath (triangles) and the entire image (circles). In this example the relative difference between the mean reflectances is +34% at 7:04GMT and -16% at 15:48 GMT. Corresponding daily averages are 0.256 (0.044) and 0.231 (0.025). The relative precision estimated as root mean square relative error is 17.9% in this example.

Psychometric Assessment of the Chinese Version of the Abbreviated Expanded Prostate Cancer Index Composite (EPIC-26) and the Clinical Practice Version (EPIC-CP) in Chinese Men With Prostate Cancer.

PubMed

Lam, Wendy W T; Tse, Michael A; Ng, Chris N L; Chung, Edward K M; Fielding, Richard

2017-06-01

The Expanded Prostate Cancer Index Composite (EPIC) instrument was designed to assess a range of health-related quality-of-life issues specifically relevant to patients with prostate cancer. This study examined the validity and reliability of Chinese versions of the 26-item EPIC and of the 16-item EPIC for Clinical Practice (EPIC-CP) in Chinese patients with prostate cancer. A Chinese version of the 26-item EPIC and the 16-item EPIC-CP were self-completed by 252 Chinese patients with prostate cancer who were recruited from three community-based cancer service centers. Confirmatory factors analysis assessed the factor structures of the EPIC and the EPIC-CP. Internal consistency and construct and clinical validities of the factor structures were assessed. Confirmatory factor analysis revealed that the original factor structure of both EPIC-26 and EPIC-CP showed good fit to this sample. A correlated model was superior to a hierarchical model in both EPIC-26 and EPIC-CP supporting the utility of the domain scores over the total scores. Cronbach α ranged from 0.55 to 0.91 for EPIC-26 and 0.44 to 0.67 for EPIC-CP. Construct validity was supported by correlations between EPIC-26/EPIC-CP and psychological distress measures. Clinical validity was supported by differentiation between patients with and without prostatectomy. These Chinese versions of the five-factor EPIC-26 and the EPIC-CP are valid and practical measures for assessing a range of health-related quality-of-life issues related to the diagnosis and treatment of prostate cancer, highlighting their utility in assessing health-related quality of life for patients diagnosed with prostate cancer. Copyright © 2017 American Academy of Hospice and Palliative Medicine. Published by Elsevier Inc. All rights reserved.

The Spectral Invariant Approximation Within Canopy Radiative Transfer to Support the Use of the EPIC/DSCOVR Oxygen B-band for Monitoring Vegetation

NASA Technical Reports Server (NTRS)

Marshak, Alexander; Knyazikhin, Yuri

2017-01-01

EPIC (Earth Polychromatic Imaging Camera) is a 10-channel spectroradiometer onboard DSCOVR (Deep Space Climate Observatory) spacecraft. In addition to the near-infrared (NIR, 780 nm) and the 'red' (680 nm) channels, EPIC also has the O2 A-band (764+/-0.2 nm) and B-band (687.75+/-0.2 nm). The EPIC Normalized Difference Vegetation Index (NDVI) is defined as the difference between NIR and 'red' channels normalized to their sum. However, the use of the O2 B-band instead of the 'red' channel mitigates the effect of atmosphere on remote sensing of surface reflectance because O2 reduces contribution from the radiation scattered by the atmosphere. Applying the radiative transfer theory and the spectral invariant approximation to EPIC observations, the paper provides supportive arguments for using the O2 band instead of the red channel for monitoring vegetation dynamics. Our results suggest that the use of the O2 B-band enhances the sensitivity of the top-of-atmosphere NDVI to the presence of vegetation.

Measuring and predicting prostate cancer related quality of life changes using EPIC for clinical practice.

PubMed

Chipman, Jonathan J; Sanda, Martin G; Dunn, Rodney L; Wei, John T; Litwin, Mark S; Crociani, Catrina M; Regan, Meredith M; Chang, Peter

2014-03-01

We expanded the clinical usefulness of EPIC-CP (Expanded Prostate Cancer Index Composite for Clinical Practice) by evaluating its responsiveness to health related quality of life changes, defining the minimally important differences for an individual patient change in each domain and applying it to a sexual outcome prediction model. In 1,201 subjects from a previously described multicenter longitudinal cohort we modeled the EPIC-CP domain scores of each treatment group before treatment, and at short-term and long-term followup. We considered a posttreatment domain score change from pretreatment of 0.5 SD or greater clinically significant and p ≤ 0.01 statistically significant. We determined the domain minimally important differences using the pooled 0.5 SD of the 2, 6, 12 and 24-month posttreatment changes from pretreatment values. We then recalibrated an EPIC-CP based nomogram model predicting 2-year post-prostatectomy functional erection from that developed using EPIC-26. For each health related quality of life domain EPIC-CP was sensitive to similar posttreatment health related quality of life changes with time, as was observed using EPIC-26. The EPIC-CP minimally important differences in changes in the urinary incontinence, urinary irritation/obstruction, bowel, sexual and vitality/hormonal domains were 1.0, 1.3, 1.2, 1.6 and 1.0, respectively. The EPIC-CP based sexual prediction model performed well (AUC 0.76). It showed robust agreement with its EPIC-26 based counterpart with 10% or less predicted probability differences between models in 95% of individuals and a mean ± SD difference of 0.0 ± 0.05 across all individuals. EPIC-CP is responsive to health related quality of life changes during convalescence and it can be used to predict 2-year post-prostatectomy sexual outcomes. It can facilitate shared medical decision making and patient centered care. Copyright © 2014 American Urological Association Education and Research, Inc. Published by Elsevier Inc. All rights reserved.

Construction of a Matched Global Cloud and Radiance Product from LEO/GEO and EPIC Observations to Estimate Daytime Earth Radiation Budget from DSCOVR

NASA Technical Reports Server (NTRS)

Duda, David P.; Khlopenkov, Konstantin V.; Thiemann, Mandana; Palikonda, Rabindra; Sun-Mack, Sunny; Minnis, Patrick; Su, Wenying

2016-01-01

With the launch of the Deep Space Climate Observatory (DSCOVR), new estimates of the daytime Earth radiation budget can be computed from a combination of measurements from the two Earth-observing sensors onboard the spacecraft, the Earth Polychromatic Imaging Camera (EPIC) and the National Institute of Standards and Technology Advanced Radiometer (NISTAR). Although these instruments can provide accurate top-of-atmosphere (TOA) radiance measurements, they lack sufficient resolution to provide details on small-scale surface and cloud properties. Previous studies have shown that these properties have a strong influence on the anisotropy of the radiation at the TOA, and ignoring such effects can result in large TOA-flux errors. To overcome these effects, high-resolution scene identification is needed for accurate Earth radiation budget estimation. Selected radiance and cloud property data measured and derived from several low earth orbit (LEO, including NASA Terra and Aqua MODIS, NOAA AVHRR) and geosynchronous (GEO, including GOES (east and west), METEOSAT, INSAT-3D, MTSAT-2, and HIMAWARI-8) satellite imagers were collected to create hourly 5-km resolution global composites of data necessary to compute angular distribution models (ADM) for reflected shortwave (SW) and longwave (LW) radiation. The satellite data provide an independent source of radiance measurements and scene identification information necessary to construct ADMs that are used to determine the daytime Earth radiation budget. To optimize spatial matching between EPIC measurements and the high-resolution composite cloud properties, LEO/GEO retrievals within the EPIC fields of view (FOV) are convolved to the EPIC point spread function (PSF) in a similar manner to the Clouds and the Earth's Radiant Energy System (CERES) Single Scanner Footprint TOA/Surface Fluxes and Clouds (SSF) product. Examples of the merged LEO/GEO/EPIC product will be presented, describing the chosen radiance and cloud properties and details of how data from the multi-satellite measurements are selected.

Construction of a Matched Global Cloud and Radiance Product from LEO/GEO and EPIC Observations to Estimate Daytime Earth Radiation Budget from DSCOVR

NASA Astrophysics Data System (ADS)

Duda, D. P.; Khlopenkov, K. V.; Palikonda, R.; Khaiyer, M. M.; Minnis, P.; Su, W.; Sun-Mack, S.

2016-12-01

With the launch of the Deep Space Climate Observatory (DSCOVR), new estimates of the daytime Earth radiation budget can computed from a combination of measurements from the two Earth-observing sensors onboard the spacecraft, the Earth Polychromatic Imaging Camera (EPIC) and the National Institute of Standards and Technology Advanced Radiometer (NISTAR). Although these instruments can provide accurate top-of-atmosphere (TOA) radiance measurements, they lack sufficient resolution to provide details on small-scale surface and cloud properties. Previous studies have shown that these properties have a strong influence on the anisotropy of the radiation at the TOA, and ignoring such effects can result in large TOA-flux errors. To overcome these effects, high-resolution scene identification is needed for accurate Earth radiation budget estimation. Selected radiance and cloud property data measured and derived from several low earth orbit (LEO, including NASA Terra and Aqua MODIS, NOAA AVHRR) and geosynchronous (GEO, including GOES (east and west), METEOSAT, INSAT-3D, MTSAT-2, and HIMAWARI-8) satellite imagers were collected to create hourly 5-km resolution global composites of data necessary to compute angular distribution models (ADM) for reflected shortwave (SW) and longwave (LW) radiation. The satellite data provide an independent source of radiance measurements and scene identification information necessary to construct ADMs that are used to determine the daytime Earth radiation budget. To optimize spatial matching between EPIC measurements and the high-resolution composite cloud properties, LEO/GEO retrievals within the EPIC fields of view (FOV) are convolved to the EPIC point spread function (PSF) in a similar manner to the Clouds and the Earth's Radiant Energy System (CERES) Single Scanner Footprint TOA/Surface Fluxes and Clouds (SSF) product. Examples of the merged LEO/GEO/EPIC product will be presented, describing the chosen radiance and cloud properties and details of how data from the multi-satellite measurements are selected.

Retrieving Smoke Aerosol Height from DSCOVR/EPIC

NASA Astrophysics Data System (ADS)

Xu, X.; Wang, J.; Wang, Y.

2017-12-01

Unlike industrial pollutant particles that are often confined within the planetary boundary layer, smoke from forest and agriculture fires can inject massive carbonaceous aerosols into the upper troposphere due to the intense pyro-convection. Sensitivity of weather and climate to absorbing carbonaceous aerosols is regulated by the altitude of those aerosol layers. However, aerosol height information remains limited from passive satellite sensors. Here we present an algorithm to estimate smoke aerosol height from radiances in the oxygen A and B bands measured by the Earth Polychromatic Imaging Camera (EPIC) from the Deep Space Climate Observatory (DSCOVR). With a suit of case studies and validation efforts, we demonstrate that smoke aerosol height can be well retrieved over both ocean and land surfaces multiple times daily.

Development of mpi_EPIC model for global agroecosystem modeling

DOE PAGES

Kang, Shujiang; Wang, Dali; Jeff A. Nichols; ...

2014-12-31

Models that address policy-maker concerns about multi-scale effects of food and bioenergy production systems are computationally demanding. We integrated the message passing interface algorithm into the process-based EPIC model to accelerate computation of ecosystem effects. Simulation performance was further enhanced by applying the Vampir framework. When this enhanced mpi_EPIC model was tested, total execution time for a global 30-year simulation of a switchgrass cropping system was shortened to less than 0.5 hours on a supercomputer. The results illustrate that mpi_EPIC using parallel design can balance simulation workloads and facilitate large-scale, high-resolution analysis of agricultural production systems, management alternatives and environmentalmore » effects.« less

The value of seasonal forecasting and crop mix adaptation to climate variability for agriculture under climate change

NASA Astrophysics Data System (ADS)

Choi, H. S.; Schneider, U.; Schmid, E.; Held, H.

2012-04-01

Changes to climate variability and frequency of extreme weather events are expected to impose damages to the agricultural sector. Seasonal forecasting and long range prediction skills have received attention as an option to adapt to climate change because seasonal climate and yield predictions could improve farmers' management decisions. The value of seasonal forecasting skill is assessed with a crop mix adaptation option in Spain where drought conditions are prevalent. Yield impacts of climate are simulated for six crops (wheat, barely, cotton, potato, corn and rice) with the EPIC (Environmental Policy Integrated Climate) model. Daily weather data over the period 1961 to 1990 are used and are generated by the regional climate model REMO as reference period for climate projection. Climate information and its consequent yield variability information are given to the stochastic agricultural sector model to calculate the value of climate information in the agricultural market. Expected consumers' market surplus and producers' revenue is compared with and without employing climate forecast information. We find that seasonal forecasting benefits not only consumers but also producers if the latter adopt a strategic crop mix. This mix differs from historical crop mixes by having higher shares of crops which fare relatively well under climate change. The corresponding value of information is highly sensitive to farmers' crop mix choices.

Assessment of Spacecraft Systems Integration Using the Electric Propulsion Interactions Code (EPIC)

NASA Technical Reports Server (NTRS)

Mikellides, Ioannis G.; Kuharski, Robert A.; Mandell, Myron J.; Gardner, Barbara M.; Kauffman, William J. (Technical Monitor)

2002-01-01

SAIC is currently developing the Electric Propulsion Interactions Code 'EPIC', an interactive computer tool that allows the construction of a 3-D spacecraft model, and the assessment of interactions between its subsystems and the plume from an electric thruster. EPIC unites different computer tools to address the complexity associated with the interaction processes. This paper describes the overall architecture and capability of EPIC including the physics and algorithms that comprise its various components. Results from selected modeling efforts of different spacecraft-thruster systems are also presented.

Electric Propulsion Interactions Code (EPIC): Recent Enhancements and Goals for Future Capabilities

NASA Technical Reports Server (NTRS)

Gardner, Barbara M.; Kuharski, Robert A.; Davis, Victoria A.; Ferguson, Dale C.

2007-01-01

The Electric Propulsion Interactions Code (EPIC) is the leading interactive computer tool for assessing the effects of electric thruster plumes on spacecraft subsystems. EPIC, developed by SAIC under the sponsorship of the Space Environments and Effects (SEE) Program at the NASA Marshall Space Flight Center, has three primary modules. One is PlumeTool, which calculates plumes of electrostatic thrusters and Hall-effect thrusters by modeling the primary ion beam as well as elastic scattering and charge-exchange of beam ions with thruster-generated neutrals. ObjectToolkit is a 3-D object definition and spacecraft surface modeling tool developed for use with several SEE Program codes. The main EPIC interface integrates the thruster plume into the 3-D geometry of the spacecraft and calculates interactions and effects of the plume with the spacecraft. Effects modeled include erosion of surfaces due to sputtering, re-deposition of sputtered materials, surface heating, torque on the spacecraft, and changes in surface properties due to erosion and deposition. In support of Prometheus I (JIMO), a number of new capabilities and enhancements were made to existing EPIC models. Enhancements to EPIC include adding the ability to scale and view individual plume components, to import a neutral plume associated with a thruster (to model a grid erosion plume, for example), and to calculate the plume from new initial beam conditions. Unfortunately, changes in program direction have left a number of desired enhancements undone. Variable gridding over a surface and resputtering of deposited materials, including multiple bounces and sticking coefficients, would significantly enhance the erosion/deposition model. Other modifications such as improving the heating model and the PlumeTool neutral plume model, enabling time dependent surface interactions, and including EM1 and optical effects would enable EPIC to better serve the aerospace engineer and electric propulsion systems integrator. We review EPIC S overall capabilities and recent modifications, and discuss directions for future enhancements.

Climate change impacts on US agriculture and forestry: benefits of global climate stabilization

NASA Astrophysics Data System (ADS)

Beach, Robert H.; Cai, Yongxia; Thomson, Allison; Zhang, Xuesong; Jones, Russell; McCarl, Bruce A.; Crimmins, Allison; Martinich, Jeremy; Cole, Jefferson; Ohrel, Sara; DeAngelo, Benjamin; McFarland, James; Strzepek, Kenneth; Boehlert, Brent

2015-09-01

Increasing atmospheric carbon dioxide levels, higher temperatures, altered precipitation patterns, and other climate change impacts have already begun to affect US agriculture and forestry, with impacts expected to become more substantial in the future. There have been numerous studies of climate change impacts on agriculture or forestry, but relatively little research examining the long-term net impacts of a stabilization scenario relative to a case with unabated climate change. We provide an analysis of the potential benefits of global climate change mitigation for US agriculture and forestry through 2100, accounting for landowner decisions regarding land use, crop mix, and management practices. The analytic approach involves a combination of climate models, a crop process model (EPIC), a dynamic vegetation model used for forests (MC1), and an economic model of the US forestry and agricultural sector (FASOM-GHG). We find substantial impacts on productivity, commodity markets, and consumer and producer welfare for the stabilization scenario relative to unabated climate change, though the magnitude and direction of impacts vary across regions and commodities. Although there is variability in welfare impacts across climate simulations, we find positive net benefits from stabilization in all cases, with cumulative impacts ranging from 32.7 billion to 54.5 billion over the period 2015-2100. Our estimates contribute to the literature on potential benefits of GHG mitigation and can help inform policy decisions weighing alternative mitigation and adaptation actions.

Extended Magnetohydrodynamics with Embedded Particle-in-Cell Simulation of Ganymede's Magnetosphere

NASA Technical Reports Server (NTRS)

Toth, Gabor; Jia, Xianzhe; Markidis, Stefano; Peng, Ivy Bo; Chen, Yuxi; Daldorff, Lars K. S.; Tenishev, Valeriy M.; Borovikov, Dmitry; Haiducek, John D.; Gombosi, Tamas I.;

DSCOVR_EPIC_L1A

Atmospheric Science Data Center

2018-05-07

... Level:  L1 Platform:  DEEP SPACE CLIMATE OBSERVATORY Instrument:  CCD IMAGER Spatial ... L1B LAGRANGE Legacy:  Retired data product , click here for a newer version. For more information or ...

DSCOVR_EPIC_L1B

Atmospheric Science Data Center

2018-05-05

... Level:  L1 Platform:  DEEP SPACE CLIMATE OBSERVATORY Instrument:  CCD IMAGER Spatial ... L1B LAGRANGE Legacy:  Retired data product , click here for a newer version. For more information or ...

How sensitive are estimates of carbon fixation in agricultural models to input data?

PubMed Central

2012-01-01

Background Process based vegetation models are central to understand the hydrological and carbon cycle. To achieve useful results at regional to global scales, such models require various input data from a wide range of earth observations. Since the geographical extent of these datasets varies from local to global scale, data quality and validity is of major interest when they are chosen for use. It is important to assess the effect of different input datasets in terms of quality to model outputs. In this article, we reflect on both: the uncertainty in input data and the reliability of model results. For our case study analysis we selected the Marchfeld region in Austria. We used independent meteorological datasets from the Central Institute for Meteorology and Geodynamics and the European Centre for Medium-Range Weather Forecasts (ECMWF). Land cover / land use information was taken from the GLC2000 and the CORINE 2000 products. Results For our case study analysis we selected two different process based models: the Environmental Policy Integrated Climate (EPIC) and the Biosphere Energy Transfer Hydrology (BETHY/DLR) model. Both process models show a congruent pattern to changes in input data. The annual variability of NPP reaches 36% for BETHY/DLR and 39% for EPIC when changing major input datasets. However, EPIC is less sensitive to meteorological input data than BETHY/DLR. The ECMWF maximum temperatures show a systematic pattern. Temperatures above 20°C are overestimated, whereas temperatures below 20°C are underestimated, resulting in an overall underestimation of NPP in both models. Besides, BETHY/DLR is sensitive to the choice and accuracy of the land cover product. Discussion This study shows that the impact of input data uncertainty on modelling results need to be assessed: whenever the models are applied under new conditions, local data should be used for both input and result comparison. PMID:22296931

Cloud Detection with the Earth Polychromatic Imaging Camera (EPIC)

NASA Technical Reports Server (NTRS)

Meyer, Kerry; Marshak, Alexander; Lyapustin, Alexei; Torres, Omar; Wang, Yugie

2011-01-01

The Earth Polychromatic Imaging Camera (EPIC) on board the Deep Space Climate Observatory (DSCOVR) would provide a unique opportunity for Earth and atmospheric research due not only to its Lagrange point sun-synchronous orbit, but also to the potential for synergistic use of spectral channels in both the UV and visible spectrum. As a prerequisite for most applications, the ability to detect the presence of clouds in a given field of view, known as cloud masking, is of utmost importance. It serves to determine both the potential for cloud contamination in clear-sky applications (e.g., land surface products and aerosol retrievals) and clear-sky contamination in cloud applications (e.g., cloud height and property retrievals). To this end, a preliminary cloud mask algorithm has been developed for EPIC that applies thresholds to reflected UV and visible radiances, as well as to reflected radiance ratios. This algorithm has been tested with simulated EPIC radiances over both land and ocean scenes, with satisfactory results. These test results, as well as algorithm sensitivity to potential instrument uncertainties, will be presented.

Potential economic benefits of adapting agricultural production systems to future climate change

USGS Publications Warehouse

Fagre, Daniel B.; Pederson, Gregory; Bengtson, Lindsey E.; Prato, Tony; Qui, Zeyuan; Williams, Jimmie R.

2010-01-01

Potential economic impacts of future climate change on crop enterprise net returns and annual net farm income (NFI) are evaluated for small and large representative farms in Flathead Valley in Northwest Montana. Crop enterprise net returns and NFI in an historical climate period (1960–2005) and future climate period (2006–2050) are compared when agricultural production systems (APSs) are adapted to future climate change. Climate conditions in the future climate period are based on the A1B, B1, and A2 CO2 emission scenarios from the Intergovernmental Panel on Climate Change Fourth Assessment Report. Steps in the evaluation include: (1) specifying crop enterprises and APSs (i.e., combinations of crop enterprises) in consultation with locals producers; (2) simulating crop yields for two soils, crop prices, crop enterprises costs, and NFIs for APSs; (3) determining the dominant APS in the historical and future climate periods in terms of NFI; and (4) determining whether NFI for the dominant APS in the historical climate period is superior to NFI for the dominant APS in the future climate period. Crop yields are simulated using the Environmental/Policy Integrated Climate (EPIC) model and dominance comparisons for NFI are based on the stochastic efficiency with respect to a function (SERF) criterion. Probability distributions that best fit the EPIC-simulated crop yields are used to simulate 100 values for crop yields for the two soils in the historical and future climate periods. Best-fitting probability distributions for historical inflation-adjusted crop prices and specified triangular probability distributions for crop enterprise costs are used to simulate 100 values for crop prices and crop enterprise costs. Averaged over all crop enterprises, farm sizes, and soil types, simulated net return per ha averaged over all crop enterprises decreased 24% and simulated mean NFI for APSs decreased 57% between the historical and future climate periods. Although adapting APSs to future climate change is advantageous (i.e., NFI with adaptation is superior to NFI without adaptation based on SERF), in six of the nine cases in which adaptation is advantageous, NFI with adaptation in the future climate period is inferior to NFI in the historical climate period. Therefore, adaptation of APSs to future climate change in Flathead Valley is insufficient to offset the adverse impacts on NFI of such change.

Potential economic benefits of adapting agricultural production systems to future climate change.

PubMed

Prato, Tony; Zeyuan, Qiu; Pederson, Gregory; Fagre, Dan; Bengtson, Lindsey E; Williams, Jimmy R

2010-03-01

Potential economic impacts of future climate change on crop enterprise net returns and annual net farm income (NFI) are evaluated for small and large representative farms in Flathead Valley in Northwest Montana. Crop enterprise net returns and NFI in an historical climate period (1960-2005) and future climate period (2006-2050) are compared when agricultural production systems (APSs) are adapted to future climate change. Climate conditions in the future climate period are based on the A1B, B1, and A2 CO(2) emission scenarios from the Intergovernmental Panel on Climate Change Fourth Assessment Report. Steps in the evaluation include: (1) specifying crop enterprises and APSs (i.e., combinations of crop enterprises) in consultation with locals producers; (2) simulating crop yields for two soils, crop prices, crop enterprises costs, and NFIs for APSs; (3) determining the dominant APS in the historical and future climate periods in terms of NFI; and (4) determining whether NFI for the dominant APS in the historical climate period is superior to NFI for the dominant APS in the future climate period. Crop yields are simulated using the Environmental/Policy Integrated Climate (EPIC) model and dominance comparisons for NFI are based on the stochastic efficiency with respect to a function (SERF) criterion. Probability distributions that best fit the EPIC-simulated crop yields are used to simulate 100 values for crop yields for the two soils in the historical and future climate periods. Best-fitting probability distributions for historical inflation-adjusted crop prices and specified triangular probability distributions for crop enterprise costs are used to simulate 100 values for crop prices and crop enterprise costs. Averaged over all crop enterprises, farm sizes, and soil types, simulated net return per ha averaged over all crop enterprises decreased 24% and simulated mean NFI for APSs decreased 57% between the historical and future climate periods. Although adapting APSs to future climate change is advantageous (i.e., NFI with adaptation is superior to NFI without adaptation based on SERF), in six of the nine cases in which adaptation is advantageous, NFI with adaptation in the future climate period is inferior to NFI in the historical climate period. Therefore, adaptation of APSs to future climate change in Flathead Valley is insufficient to offset the adverse impacts on NFI of such change.

Uncertainties in Cloud Phase and Optical Thickness Retrievals from the Earth Polychromatic Imaging Camera (EPIC)

NASA Technical Reports Server (NTRS)

Meyer, Kerry; Yang, Yuekui; Platnick, Steven

2016-01-01

This paper presents an investigation of the expected uncertainties of a single channel cloud optical thickness (COT) retrieval technique, as well as a simple cloud-temperature-threshold-based thermodynamic phase approach, in support of the Deep Space Climate Observatory (DSCOVR) mission. DSCOVR cloud products will be derived from Earth Polychromatic Imaging Camera (EPIC) observations in the ultraviolet and visible spectra. Since EPIC is not equipped with a spectral channel in the shortwave or mid-wave infrared that is sensitive to cloud effective radius (CER), COT will be inferred from a single visible channel with the assumption of appropriate CER values for liquid and ice phase clouds. One month of Aqua MODIS daytime granules from April 2005 is selected for investigating cloud phase sensitivity, and a subset of these granules that has similar EPIC sun-view geometry is selected for investigating COT uncertainties. EPIC COT retrievals are simulated with the same algorithm as the operational MODIS cloud products (MOD06), except using fixed phase-dependent CER values. Uncertainty estimates are derived by comparing the single channel COT retrievals with the baseline bi-spectral MODIS retrievals. Results show that a single channel COT retrieval is feasible for EPIC. For ice clouds, single channel retrieval errors are minimal (less than 2 percent) due to the particle- size insensitivity of the assumed ice crystal (i.e., severely roughened aggregate of hexagonal columns) scattering properties at visible wavelengths, while for liquid clouds the error is mostly limited to within 10 percent, although for thin clouds (COT less than 2) the error can be higher. Potential uncertainties in EPIC cloud masking and cloud temperature retrievals are not considered in this study.

Uncertainties in cloud phase and optical thickness retrievals from the Earth Polychromatic Imaging Camera (EPIC)

PubMed Central

Meyer, Kerry; Yang, Yuekui; Platnick, Steven

2018-01-01

This paper presents an investigation of the expected uncertainties of a single channel cloud optical thickness (COT) retrieval technique, as well as a simple cloud temperature threshold based thermodynamic phase approach, in support of the Deep Space Climate Observatory (DSCOVR) mission. DSCOVR cloud products will be derived from Earth Polychromatic Imaging Camera (EPIC) observations in the ultraviolet and visible spectra. Since EPIC is not equipped with a spectral channel in the shortwave or mid-wave infrared that is sensitive to cloud effective radius (CER), COT will be inferred from a single visible channel with the assumption of appropriate CER values for liquid and ice phase clouds. One month of Aqua MODIS daytime granules from April 2005 is selected for investigating cloud phase sensitivity, and a subset of these granules that has similar EPIC sun-view geometry is selected for investigating COT uncertainties. EPIC COT retrievals are simulated with the same algorithm as the operational MODIS cloud products (MOD06), except using fixed phase-dependent CER values. Uncertainty estimates are derived by comparing the single channel COT retrievals with the baseline bi-spectral MODIS retrievals. Results show that a single channel COT retrieval is feasible for EPIC. For ice clouds, single channel retrieval errors are minimal (< 2%) due to the particle size insensitivity of the assumed ice crystal (i.e., severely roughened aggregate of hexagonal columns) scattering properties at visible wavelengths, while for liquid clouds the error is mostly limited to within 10%, although for thin clouds (COT < 2) the error can be higher. Potential uncertainties in EPIC cloud masking and cloud temperature retrievals are not considered in this study. PMID:29619116

Uncertainties in cloud phase and optical thickness retrievals from the Earth Polychromatic Imaging Camera (EPIC).

PubMed

Meyer, Kerry; Yang, Yuekui; Platnick, Steven

2016-01-01

This paper presents an investigation of the expected uncertainties of a single channel cloud optical thickness (COT) retrieval technique, as well as a simple cloud temperature threshold based thermodynamic phase approach, in support of the Deep Space Climate Observatory (DSCOVR) mission. DSCOVR cloud products will be derived from Earth Polychromatic Imaging Camera (EPIC) observations in the ultraviolet and visible spectra. Since EPIC is not equipped with a spectral channel in the shortwave or mid-wave infrared that is sensitive to cloud effective radius (CER), COT will be inferred from a single visible channel with the assumption of appropriate CER values for liquid and ice phase clouds. One month of Aqua MODIS daytime granules from April 2005 is selected for investigating cloud phase sensitivity, and a subset of these granules that has similar EPIC sun-view geometry is selected for investigating COT uncertainties. EPIC COT retrievals are simulated with the same algorithm as the operational MODIS cloud products (MOD06), except using fixed phase-dependent CER values. Uncertainty estimates are derived by comparing the single channel COT retrievals with the baseline bi-spectral MODIS retrievals. Results show that a single channel COT retrieval is feasible for EPIC. For ice clouds, single channel retrieval errors are minimal (< 2%) due to the particle size insensitivity of the assumed ice crystal (i.e., severely roughened aggregate of hexagonal columns) scattering properties at visible wavelengths, while for liquid clouds the error is mostly limited to within 10%, although for thin clouds (COT < 2) the error can be higher. Potential uncertainties in EPIC cloud masking and cloud temperature retrievals are not considered in this study.

Uncertainties in cloud phase and optical thickness retrievals from the Earth Polychromatic Imaging Camera (EPIC)

NASA Astrophysics Data System (ADS)

Meyer, Kerry; Yang, Yuekui; Platnick, Steven

2016-04-01

This paper presents an investigation of the expected uncertainties of a single-channel cloud optical thickness (COT) retrieval technique, as well as a simple cloud-temperature-threshold-based thermodynamic phase approach, in support of the Deep Space Climate Observatory (DSCOVR) mission. DSCOVR cloud products will be derived from Earth Polychromatic Imaging Camera (EPIC) observations in the ultraviolet and visible spectra. Since EPIC is not equipped with a spectral channel in the shortwave or mid-wave infrared that is sensitive to cloud effective radius (CER), COT will be inferred from a single visible channel with the assumption of appropriate CER values for liquid and ice phase clouds. One month of Aqua MODerate-resolution Imaging Spectroradiometer (MODIS) daytime granules from April 2005 is selected for investigating cloud phase sensitivity, and a subset of these granules that has similar EPIC Sun-view geometry is selected for investigating COT uncertainties. EPIC COT retrievals are simulated with the same algorithm as the operational MODIS cloud products (MOD06), except using fixed phase-dependent CER values. Uncertainty estimates are derived by comparing the single-channel COT retrievals with the baseline bi-spectral MODIS retrievals. Results show that a single-channel COT retrieval is feasible for EPIC. For ice clouds, single-channel retrieval errors are minimal (< 2 %) due to the particle size insensitivity of the assumed ice crystal (i.e., severely roughened aggregate of hexagonal columns) scattering properties at visible wavelengths, while for liquid clouds the error is mostly limited to within 10 %, although for thin clouds (COT < 2) the error can be higher. Potential uncertainties in EPIC cloud masking and cloud temperature retrievals are not considered in this study.

Resolving the Kinetic Reconnection Length Scale in Global Magnetospheric Simulations with MHD-EPIC

NASA Astrophysics Data System (ADS)

Toth, G.; Chen, Y.; Cassak, P.; Jordanova, V.; Peng, B.; Markidis, S.; Gombosi, T. I.

2016-12-01

We have recently developed a new modeling capability: the Magnetohydrodynamics with Embedded Particle-in-Cell (MHD-EPIC) algorithm with support from Los Alamos SHIELDS and NSF INSPIRE grants. We have implemented MHD-EPIC into the Space Weather Modeling Framework (SWMF) using the implicit Particle-in-Cell (iPIC3D) and the BATS-R-US extended magnetohydrodynamic codes. The MHD-EPIC model allows two-way coupled simulations in two and three dimensions with multiple embedded PIC regions. Both BATS-R-US and iPIC3D are massively parallel codes. The MHD-EPIC approach allows global magnetosphere simulations with embedded kinetic simulations. For small magnetospheres, like Ganymede or Mercury, we can easily resolve the ion scales around the reconnection sites. Modeling the Earth magnetosphere is very challenging even with our efficient MHD-EPIC model due to the large separation between the global and ion scales. On the other hand the large separation of scales may be exploited: the solution may not be sensitive to the ion inertial length as long as it is small relative to the global scales. The ion inertial length can be varied by changing the ion mass while keeping the MHD mass density, the velocity, and pressure the same for the initial and boundary conditions. Our two-dimensional MHD-EPIC simulations for the dayside reconnection region show in fact, that the overall solution is not sensitive to ion inertial length. The shape, size and frequency of flux transfer events are very similar for a wide range of ion masses. Our results mean that 3D MHD-EPIC simulations for the Earth and other large magnetospheres can be made computationally affordable by artificially increasing the ion mass: the required grid resolution and time step in the PIC model are proportional to the ion inertial length. Changing the ion mass by a factor of 4, for example, speeds up the PIC code by a factor of 256. In fact, this approach allowed us to perform an hour-long 3D MHD-EPIC simulations for the Earth magnetosphere.

Enlisted Personnel Individualized Career System (EPICS) Test and Evaluation

DTIC Science & Technology

1984-01-01

The EPICS program, which was developed using an integrated personnel systems approach ( IPSA ), delays formal school training until after personnel have...received shipboard on-job training complemented by job performance aids (3PAs). Early phases of the program, which involved developing the IPSA EPICS...detailed description of the conception and development of the EPICS IPSA model, the execution of the front-end job design analyses, 3PA and instructional

Fast radiative transfer models for retrieval of cloud properties in the back-scattering region: application to DSCOVR-EPIC sensor

NASA Astrophysics Data System (ADS)

Molina Garcia, Victor; Sasi, Sruthy; Efremenko, Dmitry; Doicu, Adrian; Loyola, Diego

2017-04-01

In this work, the requirements for the retrieval of cloud properties in the back-scattering region are described, and their application to the measurements taken by the Earth Polychromatic Imaging Camera (EPIC) on board the Deep Space Climate Observatory (DSCOVR) is shown. Various radiative transfer models and their linearizations are implemented, and their advantages and issues are analyzed. As radiative transfer calculations in the back-scattering region are computationally time-consuming, several acceleration techniques are also studied. The radiative transfer models analyzed include the exact Discrete Ordinate method with Matrix Exponential (DOME), the Matrix Operator method with Matrix Exponential (MOME), and the approximate asymptotic and equivalent Lambertian cloud models. To reduce the computational cost of the line-by-line (LBL) calculations, the k-distribution method, the Principal Component Analysis (PCA) and a combination of the k-distribution method plus PCA are used. The linearized radiative transfer models for retrieval of cloud properties include the Linearized Discrete Ordinate method with Matrix Exponential (LDOME), the Linearized Matrix Operator method with Matrix Exponential (LMOME) and the Forward-Adjoint Discrete Ordinate method with Matrix Exponential (FADOME). These models were applied to the EPIC oxygen-A band absorption channel at 764 nm. It is shown that the approximate asymptotic and equivalent Lambertian cloud models give inaccurate results, so an offline processor for the retrieval of cloud properties in the back-scattering region requires the use of exact models such as DOME and MOME, which behave similarly. The combination of the k-distribution method plus PCA presents similar accuracy to the LBL calculations, but it is up to 360 times faster, and the relative errors for the computed radiances are less than 1.5% compared to the results when the exact phase function is used. Finally, the linearized models studied show similar behavior, with relative errors less than 1% for the radiance derivatives, but FADOME is 2 times faster than LDOME and 2.5 times faster than LMOME.

DSCOVR/EPIC observations of SO2 reveal dynamics of young volcanic eruption clouds

NASA Astrophysics Data System (ADS)

Carn, S. A.; Krotkov, N. A.; Taylor, S.; Fisher, B. L.; Li, C.; Bhartia, P. K.; Prata, F. J.

2017-12-01

Volcanic emissions of sulfur dioxide (SO2) and ash have been measured by ultraviolet (UV) and infrared (IR) sensors on US and European polar-orbiting satellites since the late 1970s. Although successful, the main limitation of these observations from low Earth orbit (LEO) is poor temporal resolution (once per day at low latitudes). Furthermore, most currently operational geostationary satellites cannot detect SO2, a key tracer of volcanic plumes, limiting our ability to elucidate processes in fresh, rapidly evolving volcanic eruption clouds. In 2015, the launch of the Earth Polychromatic Imaging Camera (EPIC) aboard the Deep Space Climate Observatory (DSCOVR) provided the first opportunity to observe volcanic clouds from the L1 Lagrange point. EPIC is a 10-band spectroradiometer spanning UV to near-IR wavelengths with two UV channels sensitive to SO2, and a ground resolution of 25 km. The unique L1 vantage point provides continuous observations of the sunlit Earth disk, from sunrise to sunset, offering multiple daily observations of volcanic SO2 and ash clouds in the EPIC field of view. When coupled with complementary retrievals from polar-orbiting UV and IR sensors such as the Ozone Monitoring Instrument (OMI), the Ozone Mapping and Profiler Suite (OMPS), and the Atmospheric Infrared Sounder (AIRS), we demonstrate how the increased observation frequency afforded by DSCOVR/EPIC permits more timely volcanic eruption detection and novel analyses of the temporal evolution of volcanic clouds. Although EPIC has detected several mid- to high-latitude volcanic eruptions since launch, we focus on recent eruptions of Bogoslof volcano (Aleutian Islands, AK, USA). A series of EPIC exposures from May 28-29, 2017, uniquely captures the evolution of SO2 mass in a young Bogoslof eruption cloud, showing separation of SO2- and ice-rich regions of the cloud. We show how analyses of these sequences of EPIC SO2 data can elucidate poorly understood processes in transient eruption clouds, such as the relative roles of H2S oxidation and ice scavenging in modifying volcanic SO2 emissions. Detection of these relatively small events also proves EPIC's ability to provide timely detection of volcanic clouds in the upper troposphere and lower stratosphere.

EPIC229426032 b and EPIC246067459 b: discovery and characterization of two new transiting hot Jupiters from K2

NASA Astrophysics Data System (ADS)

Soto, M. G.; Díaz, M. R.; Jenkins, J. S.; Rojas, F.; Espinoza, N.; Brahm, R.; Drass, H.; Jones, M. I.; Rabus, M.; Hartman, J.; Sarkis, P.; Jordán, A.; Lachaume, R.; Pantoja, B.; Vučković, M.; Ciardi, D. R.; Crossfield, I.; Dressing, C.; Gonzales, E.; Hirsch, L.

2018-05-01

We report the discovery of two hot Jupiters orbiting the stars EPIC229426032 and EPIC246067459. We used photometric data from Campaign 11 and 12 of the Kepler K2 Mission and radial velocity data obtained using the HARPS, FEROS, and CORALIE spectrographs. EPIC229426032 b and EPIC246067459 b have masses of 1.60^{+0.11}_{-0.11} and 0.86^{+0.13}_{-0.12}Mjup, radii of 1.65^{+0.07}_{-0.08} and 1.30^{+0.15}_{-0.14} R_{jup}, and are orbiting their host stars in 2.18 and 3.20-day orbits, respectively. The large radius of EPIC229426032 b leads us to conclude that this candidate corresponds to a highly inflated hot Jupiter. EPIC2460674559 b has a radius consistent with theoretical models, considering the high incident flux falling on the planet. We consider EPIC229426032 b to be a excellent system for follow-up studies, since not only is it very inflated, but it also orbits a relatively bright star (V = 11.6).

Droughts, epic droughts and droughty centuries - lessons from a California paleoclimatic record: a PACLIM 2001 meeting report

USGS Publications Warehouse

Dettinger, M.D.

2001-01-01

During the early 1990s (but echoing studies by S.T. Harding at the University of California, from as early as the 1930s), several lines of paleoclimate evidence in and around the Sierra Nevada Range have provided the water community in California with some real horror stories. By studying ancient tree stumps submerged in Lake Tahoe and Tenaya Lake, stumps that were emerging from Mono Lake during its recent decline, and stumps that were exhumed in the Walker River bed during the floods of 1997, paleoclimatologists like Scott Stine of California State University, Hayward, assembled a picture of epic droughts in the central Sierra Nevada during the medieval period. These droughts had to be severe to drop water levels in the lakes and rivers low enough for the trees to grow in the first place, and then had to last for hundreds of years to explain tree-ring counts in these sizeable stumps. Worse yet, the evidence suggested at least two such epic droughts, one ending close to 1100 and the other close to 1350. These epic droughts challenged paleoclimatologists, as well as modern climatologists and hydrologists, to understand and, ultimately, to determine the likelihood that such droughts might recur in the foreseeable future. The first challenge, however, was to verify that such droughts were more than local events and as extreme as suggested. At this year’s Pacific Climate (PACLIM) Workshop, held March 18–21, 2001, at Asilomar (Pacific Grove, Calif.), special sessions brought together scientists to compare paleoclimatic reconstructions of ancient droughts and pluvial (wet) epidodes to try to determine the nature of decadal and centennial climate fluctuations in western North America, with emphasis on California. A companion session brought together modern climatologists to report on the latest explanations (and evidence) for decadal climate variations during the instrumental era of the 20th century. PACLIM is an annual workshop that, since 1983, has brought together specialists from diverse fields, including physical, social, and biological sciences, to discuss and investigate climate and climate effects in the eastern Pacific and western America. This year’s PACLIM was sponsored by the U.S. Geological Survey, NOAA Office of Global Programs, California Department of Water Resources, and, for the first time, the CALFED Science Program. In addition to the presentations summarized here, sessions at this year’s PACLIM covered topics as varied as the North American monsoon system; recent economic and political effects of California’s climate variations, including a presentation on climate and CALFED by Sam Luoma (U.S. Geological Survey, Menlo Park); and research into daily-to-seasonal weather variations. 

Evaluation Report: The EPIC Leadership Development Model and Pilot Programs

ERIC Educational Resources Information Center

New Leaders (NJ1), 2011

2011-01-01

New Leaders created the Effective Practice Incentive Community (EPIC) initiative in 2006 to learn from educators driving achievement gains in high-need urban schools. EPIC identifies school leaders and teachers whose students are making significant achievement gains and financially rewards these educators in exchange for sharing and documenting…

Perfusion Electronic Record Documentation Using Epic Systems Software.

PubMed

Riley, Jeffrey B; Justison, George A

2015-12-01

The authors comment on Steffens and Gunser's article describing the University of Wisconsin adoption of the Epic anesthesia record to include perfusion information from the cardiopulmonary bypass patient experience. We highlight the current-day lessons and the valuable quality and safety principles the Wisconsin-Epic model anesthesia-perfusion record provides.

Climate change impacts on US agriculture and forestry: benefits of global climate stabilization

DOE Office of Scientific and Technical Information (OSTI.GOV)

Beach, Robert H.; Cai, Yongxia; Thomson, Allison

Increasing atmospheric carbon dioxide levels, higher temperatures, altered precipitation patterns, and other climate change impacts have already begun to affect US agriculture and forestry, with impacts expected to become more substantial in the future. There have been numerous studies of climate change impacts on agriculture or forestry, but relatively little research examining the long-term net impacts of a stabilization scenario relative to a case with unabated climate change. We provide an analysis of the potential benefits of global climate change mitigation for US agriculture and forestry through 2100, accounting for landowner decisions regarding land use, crop mix, and management practices.more » The analytic approach involves a combination of climate models, a crop process model (EPIC), a dynamic vegetation model used for forests (MC1), and an economic model of the US forestry and agricultural sector (FASOM-GHG). We find substantial impacts on productivity, commodity markets, and consumer and producer welfare for the stabilization scenario relative to unabated climate change, though the magnitude and direction of impacts vary across regions and commodities. Although there is variability in welfare impacts across climate simulations, we find positive net benefits from stabilization in all cases, with cumulative impacts ranging from $32.7 billion to $54.5 billion over the period 2015-2100. Our estimates contribute to the literature on potential benefits of GHG mitigation and can help inform policy decisions weighing alternative mitigation and adaptation actions.« less

Nitrous Oxide Emissions from Biofuel Crops and Parameterization in the EPIC Biogeochemical Model

EPA Science Inventory

This presentation describes year 1 field measurements of N2O fluxes and crop yields which are used to parameterize the EPIC biogeochemical model for the corresponding field site. Initial model simulations are also presented.

“Nitrogen Budgets for the Mississippi River Basin using the ...

EPA Pesticide Factsheets

Presentation on the results from the 3 linked models, EPIC (USDA), CMAQ and NEWS to analyze a scenario of increased corn production related to biofuels together with Clean Air Act emission reductions across the US and the resultant effect on nitrogen loading to the Gulf of Mexico from the Mississippi River Basin. This is a demonstration of a capability to connect the N cascade bringing air, land, water together. EPIC = Environmental Policy Integrated Climate model, CMAQ = Community Multiscale Air Quality model, NEWS = Nutrient Export of WaterSheds model. The National Exposure Research Laboratory (NERL) Atmospheric Modeling and Analysis Division (AMAD) conducts research in support of EPA mission to protect human health and the environment. AMAD research program is engaged in developing and evaluating predictive atmospheric models on all spatial and temporal scales for forecasting the air quality and for assessing changes in air quality and air pollutant exposures, as affected by changes in ecosystem management and regulatory decisions. AMAD is responsible for providing a sound scientific and technical basis for regulatory policies based on air quality models to improve ambient air quality. The models developed by AMAD are being used by EPA, NOAA, and the air pollution community in understanding and forecasting not only the magnitude of the air pollution problem, but also in developing emission control policies and regulations for air quality improvements.

User-Friendly Data Servers for Climate Studies at the Asia-Pacific Data-Research Center (APDRC)

NASA Astrophysics Data System (ADS)

Yuan, G.; Shen, Y.; Zhang, Y.; Merrill, R.; Waseda, T.; Mitsudera, H.; Hacker, P.

2002-12-01

The APDRC was recently established within the International Pacific Research Center (IPRC) at the University of Hawaii. The APDRC mission is to increase understanding of climate variability in the Asia-Pacific region by developing the computational, data-management, and networking infrastructure necessary to make data resources readily accessible and usable by researchers, and by undertaking data-intensive research activities that will both advance knowledge and lead to improvements in data preparation and data products. A focus of recent activity is the implementation of user-friendly data servers. The APDRC is currently running a Live Access Server (LAS) developed at NOAA/PMEL to provide access to and visualization of gridded climate products via the web. The LAS also allows users to download the selected data subsets in various formats (such as binary, netCDF and ASCII). Most of the datasets served by the LAS are also served through our OPeNDAP server (formerly DODS), which allows users to directly access the data using their desktop client tools (e.g. GrADS, Matlab and Ferret). In addition, the APDRC is running an OPeNDAP Catalog/Aggregation Server (CAS) developed by Unidata at UCAR to serve climate data and products such as model output and satellite-derived products. These products are often large (> 2 GB) and are therefore stored as multiple files (stored separately in time or in parameters). The CAS remedies the inconvenience of multiple files and allows access to the whole dataset (or any subset that cuts across the multiple files) via a single request command from any DODS enabled client software. Once the aggregation of files is configured at the server (CAS), the process of aggregation is transparent to the user. The user only needs to know a single URL for the entire dataset, which is, in fact, stored as multiple files. CAS even allows aggregation of files on different systems and at different locations. Currently, the APDRC is serving NCEP, ECMWF, SODA, WOCE-Satellite, TMI, GPI and GSSTF products through the CAS. The APDRC is also running an EPIC server developed by PMEL/NOAA. EPIC is a web-based, data search and display system suited for in situ (station versus gridded) data. The process of locating and selecting individual station data from large collections (millions of profiles or time series, etc.) of in situ data is a major challenge. Serving in situ data on the Internet faces two problems: the irregularity of data formats; and the large quantity of data files. To solve the first problem, we have converted the in situ data into netCDF data format. The second problem was solved by using the EPIC server, which allows users to easily subset the files using a friendly graphical interface. Furthermore, we enhanced the capability of EPIC and configured OPeNDAP into EPIC to serve the numerous in situ data files and to export them to users through two different options: 1) an OPeNDAP pointer file of user-selected data files; and 2) a data package that includes meta-information (e.g., location, time, cruise no, etc.), a local pointer file, and the data files that the user selected. Option 1) is for those who do not want to download the selected data but want to use their own application software (such as GrADS, Matlab and Ferret) for access and analysis; option 2) is for users who want to store the data on their own system (e.g. laptops before going for a cruise) for subsequent analysis. Currently, WOCE CTD and bottle data, the WOCE current meter data, and some Argo float data are being served on the EPIC server.

Maintaining environmental quality while expanding biomass production: Sub-regional U.S. policy simulations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Egbendewe-Mondzozo, Aklesso; Swinton, S.; Izaurralde, Roberto C.

2013-03-01

This paper evaluates environmental policy effects on ligno-cellulosic biomass production and environ- mental outcomes using an integrated bioeconomic optimization model. The environmental policy integrated climate (EPIC) model is used to simulate crop yields and environmental indicators in current and future potential bioenergy cropping systems based on weather, topographic and soil data. The crop yield and environmental outcome parameters from EPIC are combined with biomass transport costs and economic parameters in a representative farmer profit-maximizing mathematical optimization model. The model is used to predict the impact of alternative policies on biomass production and environmental outcomes. We find that without environmental policy,more » rising biomass prices initially trigger production of annual crop residues, resulting in increased greenhouse gas emissions, soil erosion, and nutrient losses to surface and ground water. At higher biomass prices, perennial bioenergy crops replace annual crop residues as biomass sources, resulting in lower environmental impacts. Simulations of three environmental policies namely a carbon price, a no-till area subsidy, and a fertilizer tax reveal that only the carbon price policy systematically mitigates environmental impacts. The fertilizer tax is ineffectual and too costly to farmers. The no-till subsidy is effective only at low biomass prices and is too costly to government.« less

A Relationship Between Visible and Near-IR Global Spectral Reflectance based on DSCOVR/EPIC

NASA Astrophysics Data System (ADS)

Wen, G.; Marshak, A.; Song, W.; Knyazikhin, Y.

2017-12-01

The launch of Deep Space Climate Observatory (DSCOVR) to the Earth's first Lagrange point (L1) allows us to see a new perspective of the Earth. The Earth Polychromatic Imaging Camera (EPIC) on the DSCOVR measures the back scattered radiation of the entire sunlit side of the Earth at 10 narrow band wavelengths ranging from ultraviolet to visible and near-infrared. We analyzed EPIC global averaged reflectance data. We found that the global averaged visible reflectance has a unique non-linear relationship with near infrared (NIR) reflectance. This non-linear relationship was not observed by any other satellite observations due to a limited spatial and temporal coverage of either low earth orbit (LEO) or geostationary satellite. The non-linear relationship is associated with the changing in the coverages of ocean, cloud, land, and vegetation as the Earth rotates. We used Terra and Aqua MODIS daily global radiance data to simulate EPIC observations. Since MODIS samples the Earth in a limited swath (2330km cross track) at a specific local time (10:30 am for Terra, 1:30 pm for Aqua) with approximately 15 orbits per day, the global average reflectance at a given time may be approximated by averaging the reflectance in the MODIS nearest-time swaths in the sunlit hemisphere. We found that MODIS simulated global visible and NIR spectral reflectance captured the major feature of the EPIC observed non-linear relationship with some errors. The difference between the two is mainly due to the sampling limitation of polar satellite. This suggests that that EPIC observations can be used to reconstruct MODIS global average reflectance time series for studying Earth system change in the past decade.

Estimating the agricultural fertilizer NH3 emission in China based on the bi-directional CMAQ model and an agro-ecosystem model

NASA Astrophysics Data System (ADS)

Wang, S.

2014-12-01

Atmospheric ammonia (NH3) plays an important role in fine particle formation. Accurate estimates of ammonia can reduce uncertainties in air quality modeling. China is one of the largest countries emitting ammonia with the majority of NH3 emissions coming from the agricultural practices, such as fertilizer applications and animal operations. The current ammonia emission estimates in China are mainly based on pre-defined emission factors. Thus, there are considerable uncertainties in estimating NH3 emissions, especially in time and space distribution. For example, fertilizer applications vary in the date of application and amount by geographical regions and crop types. In this study, the NH3 emission from the agricultural fertilizer use in China of 2011 was estimated online by an agricultural fertilizer modeling system coupling a regional air-quality model and an agro-ecosystem model, which contains three main components 1) the Environmental Policy Integrated Climate (EPIC) model, 2) the meso-scale meteorology Weather Research and Forecasting (WRF) model and 3) the CMAQ air quality model with bi-directional ammonia fluxes. The EPIC output information about daily fertilizer application and soil characteristics would be the input of the CMAQ model. In order to run EPIC model, much Chinese local information is collected and processed. For example, Crop land data are computed from the MODIS land use data at 500-m resolution and crop categories at Chinese county level; the fertilizer use rate for different fertilizer types, crops and provinces are obtained from Chinese statistic materials. The system takes into consideration many influencing factors on agriculture ammonia emission, including weather, the fertilizer application method, timing, amount, and rate for specific pastures and crops. The simulated fertilizer data is compared with the NH3 emissions and fertilizer application data from other sources. The results of CMAQ modeling are also discussed and analyzed with field measurements. The estimated agricultural fertilizer NH3 emission in this study is about 3Tg in 2011. The regions with the highest emission rates are located in the North China Plain. Monthly, the peak ammonia emissions occur in April to July.

Development of Multi-Sensor Global Cloud and Radiance Composites for DSCOVR EPIC Imager with Subpixel Definition

NASA Technical Reports Server (NTRS)

Khlopenkov, Konstantin V.; Duda, David; Thieman, Mandana; Sun-mack, Szedung; Su, Wenying; Minnis, Patrick; Bedka, Kristopher

2017-01-01

The Deep Space Climate Observatory (DSCOVR) enables analysis of the daytime Earth radiation budget via the onboard Earth Polychromatic Imaging Camera (EPIC) and National Institute of Standards and Technology Advanced Radiometer (NISTAR). EPIC delivers adequate spatial resolution imagery but only in shortwave bands (317-780 nm), while NISTAR measures the top-of-atmosphere (TOA) whole-disk radiance in shortwave and longwave broadband windows. Accurate calculation of albedo and outgoing longwave flux requires a high-resolution scene identification such as the radiance observations and cloud properties retrievals from low earth orbit (LEO, including NASA Terra and Aqua MODIS, Suomi-NPP VIIRS, and NOAA AVHRR) and geosynchronous (GEO, including GOES east and west, METEOSAT, INSAT-3D, MTSAT-2, and Himawari-8) satellite imagers. The cloud properties are derived using the Clouds and the Earth's Radiant Energy System (CERES) mission Cloud Subsystem group algorithms. These properties have to be co-located with EPIC pixels to provide the scene identification and to select anisotropic directional models (ADMs), which are then used to adjust the NISTAR-measured radiance and subsequently obtain the global daytime shortwave and longwave fluxes. This work presents an algorithm for optimal merging of selected radiance and cloud property parameters derived from multiple satellite imagers to obtain seamless global hourly composites at 5-km resolution. Selection of satellite data for each 5-km pixel is based on an aggregated rating that incorporates five parameters: nominal satellite resolution, pixel time relative to the EPIC time, viewing zenith angle, distance from day/night terminator, and probability of sun glint. To provide a smoother transition in the merged output, in regions where candidate pixel data from two satellite sources have comparable aggregated rating, the selection decision is defined by the cumulative function of the normal distribution so that abrupt changes in the visual appearance of the composite data are avoided. Higher spatial accuracy in the composite product is achieved by using the inverse mapping with gradient search during reprojection and bicubic interpolation for pixel resampling.

The Once and Future Battles of Thor and the Midgard Serpent (or the Southern Ocean's Role in Climate)

NASA Astrophysics Data System (ADS)

Russell, J. L.

2017-12-01

Floats deployed by oceanographers are giving us all ringside seats to the epic battle between the wind and the deep ocean around Antarctica which will determine the rate of global atmospheric warming over the next century. The poleward-shift and intensification of the Southern Hemisphere westerly winds has been shown to maintain the connection between the surface ocean and the atmosphere with the deep ocean even as the surface ocean warms. This "doorway" allows the vast deep ocean reservoir to play a significant role in the transient global climate response to increasing atmospheric greenhouse gases. Coupled climate and earth system models at low and high resolution all simulate poleward-shifted and intensified Southern Hemisphere surface westerly winds when subjected to an atmospheric carbon dioxide doubling. Comparisons of these simulations reveal how stratification, resolution and eddies affect the transient global climate response to increasing atmospheric greenhouse gases - and our collective fate.

Observing the ExoEarth: Simulating the Retrieval of Exoplanet Parameters Using DSCOVR

NASA Astrophysics Data System (ADS)

Kane, S.; Cowan, N. B.; Domagal-Goldman, S. D.; Herman, J. R.; Robinson, T.; Stine, A.

2017-12-01

The field of exoplanets has rapidly expanded from detection to include exoplanet characterization. This has been enabled by developments such as the detection of terrestrial-sized planets and the use of transit spectroscopy to study exoplanet atmospheres. Studies of rocky planets are leading towards the direct imaging of exoplanets and the development of techniques to extract their intrinsic properties. The importance of properties such as rotation, albedo, and obliquity are significant since they inform planet formation theories and are key input parameters for Global Circulation Models used to determine surface conditions, including habitability. Thus, a complete characterization of exoplanets for understanding habitable climates requires the ability to measure these key planetary parameters. The retrieval of planetary rotation rates, albedos, and obliquities from highly undersampled imaging data can be honed using satellites designed to study the Earth's atmosphere. In this talk I will describe how the Deep Space Climate Observatory (DSCOVR) provides a unique opportunity to test such retrieval methods using data for the sunlit hemisphere of the Earth. Our methods use the high-resolution DSCOVR-EPIC images to simulate the Earth as an exoplanet, by deconvolving the images to match a variety of expected exoplanet mission requirements, and by comparing EPIC data with the cavity radiometer data from DSCOVR-NISTAR that views the Earth as a single pixel. Through this methodology, we are creating a grid of retrieval states as a function of image resolution, observing cadence, passband, etc. Our modeling of the DSCOVR data will provide an effective baseline from which to develop tools that can be applied to a variety of exoplanet imaging data.

Quantifying the impacts of climatic trend and fluctuation on crop yields in northern China.

PubMed

Qiao, Jianmin; Yu, Deyong; Liu, Yupeng

2017-10-01

Climate change plays a critical role in crop yield variations, which has attracted a great deal of concern worldwide. However, the mechanisms of how climatic trend and fluctuations affect crop yields are not well understood and need to be further investigated. Thus, using the GIS-based Environmental Policy Integrated Climate (EPIC) model, we simulated the yields of major crops (i.e., wheat, maize, and rice) and evaluated the impacts of climatic factors on crop yields in the Agro-Pastoral Transitional Zone (APTZ) of northern China between 1980 and 2010. The partial least squares regression model was used to assess the contribution rates of climatic factors (i.e., precipitation, photosynthetically active radiation (PAR), minimum temperature (T min ), maximum temperature (T max )) to the variation of crop yields. The Breaks for Additive Season and Trend (BFAST) model was adopted to decompose the climate factors into trend and fluctuation components, and the relative contributions of climate trend and fluctuation were then evaluated. The results indicated that the contributions of climatic factors to yield variations of wheat, maize, and rice were 31.7, 37.7, and 23.1%, respectively. That is, climate change had larger impacts on maize than wheat and rice. More cultivated areas were significantly and positively correlated with precipitation than with other climatic factors due to the limited precipitation in the APTZ. Also, climatic trend component had positive impacts on crop yields in the whole region, whereas the climate fluctuation was associated mainly with the areas where the crop yields decreased. This study helps improve our understanding of the mechanisms of climate change impacts on crop yields, and provides useful scientific information for designing regional-scale strategies of adaptation to climate change.

DSCOVR Transcendance

NASA Astrophysics Data System (ADS)

Herman, J. R.; Boccara, M.; Albers, S. C.

2017-12-01

The Earth Polychromatic Imaging Camera (EPIC) onboard the DSCOVR satellite continuously views the sun-illuminated portion of the Earth with spectral coverage in the visible band, among others. Ideally, such a system would be able to provide a video with continuous coverage up to real time. However due to limits in onboard storage, bandwidth, and antenna coverage on the ground, we can receive at most 20 images a day, separated by at least one hour. Also, the processing time to generate the visible image out of the separate RGB channels delays public images delivery by a day or two. Finally, occasional remote tuning of instruments can cause several day periods where the imagery is completely missing. We are proposing a model-based method to fill these gaps and restore images lost in real-time processing. We are combining two sets of algorithms. The first, called Blueturn, interpolates successive images while projecting them on a 3-D model of the Earth, all this being done in real-time using the GPU. The second, called Simulated Weather Imagery (SWIM), makes EPIC-like images utilizing a ray-tracing model of scattering and absorption of sunlight by clouds, atmospheric gases, aerosols, and land surface. Clouds are obtained from 3-D gridded analyses and forecasts using weather modeling systems such as the Local Analysis and Prediction System (LAPS), and the Flow-following finite-volume Finite Icosahedral Model (FIM). SWIM uses EPIC images to validate its models. Typical model grid spacing is about 20km and is roughly commensurate with the EPIC imagery. Calculating one image per hour is enough for Blueturn to generate a smooth video. The synthetic images are designed to be visually realistic and aspire to be indistinguishable from the real ones. Resulting interframe transitions become seamless, and real-time delay is reduced to 1 hour. With Blueturn already available as a free online app, streaming EPIC images directly from NASA's public website, and with another SWIM server to ensure constant interval between key images, this work brings transcendance to EPIC's tribute. Enriched by two years of actual service in space, the most real holistic view of the Earth will be continued at a high degree of fidelity, regardless of EPIC limitations or interruptions.

Limitations in estimating phosphorus sorption capacity from soil properties

USDA-ARS?s Scientific Manuscript database

An important component of all P loss models is how P cycling in soils is described. The P cycling routines in most models are based on the routines developed for the EPIC model over 30 years ago. EPIC was developed so that it could be parameterized with easily obtainable soil data and thus, by neces...

Quantitative pre-clinical screening of therapeutics for joint diseases using contrast enhanced micro-computed tomography.

PubMed

Willett, N J; Thote, T; Hart, M; Moran, S; Guldberg, R E; Kamath, R V

2016-09-01

The development of effective therapies for cartilage protection has been limited by a lack of efficient quantitative cartilage imaging modalities in pre-clinical in vivo models. Our objectives were two-fold: first, to validate a new contrast-enhanced 3D imaging analysis technique, equilibrium partitioning of an ionic contrast agent-micro computed tomography (EPIC-μCT), in a rat medial meniscal transection (MMT) osteoarthritis (OA) model; and second, to quantitatively assess the sensitivity of EPIC-μCT to detect the effects of matrix metalloproteinase inhibitor (MMPi) therapy on cartilage degeneration. Rats underwent MMT surgery and tissues were harvested at 1, 2, and 3 weeks post-surgery or rats received an MMPi or vehicle treatment and tissues harvested 3 weeks post-surgery. Parameters of disease progression were evaluated using histopathology and EPIC-μCT. Correlations and power analyses were performed to compare the techniques. EPIC-μCT was shown to provide simultaneous 3D quantification of multiple parameters, including cartilage degeneration and osteophyte formation. In MMT animals treated with MMPi, OA progression was attenuated, as measured by 3D parameters such as lesion volume and osteophyte size. A post-hoc power analysis showed that 3D parameters for EPIC-μCT were more sensitive than 2D parameters requiring fewer animals to detect a therapeutic effect of MMPi. 2D parameters were comparable between EPIC-μCT and histopathology. This study demonstrated that EPIC-μCT has high sensitivity to provide 3D structural and compositional measurements of cartilage and bone in the joint. EPIC-μCT can be used in combination with histology to provide a comprehensive analysis to screen new potential therapies. Copyright © 2016 Osteoarthritis Research Society International. Published by Elsevier Ltd. All rights reserved.

Assessing the Benefits of Global Climate Stabilization Within an Integrated Modeling Framework

NASA Astrophysics Data System (ADS)

Beach, R. H.

2015-12-01

Increasing atmospheric carbon dioxide levels, higher temperatures, altered precipitation patterns, and other climate change impacts have already begun to affect US agriculture and forestry, with impacts expected to become more substantial in the future. There have been a number of studies of climate change impacts on agriculture or forestry. However, relatively few studies explore climate change impacts on both agriculture and forests simultaneously, including the interactions between alternative land uses and implications for market outcomes. Additionally, there is a lack of detailed analyses of the effects of stabilization scenarios relative to unabated emissions scenarios. Such analyses are important for developing estimates of the benefits of those stabilization scenarios, which can play a vital role in assessing tradeoffs associated with allocating resources across alternative mitigation and adaptation activities. We provide an analysis of the potential benefits of global climate change mitigation for US agriculture and forestry through 2100, accounting for landowner decisions regarding land use, crop mix, and management practices. The analytic approach involves a combination of climate models, a crop process model (EPIC), a dynamic vegetation model used for forests (MC1), and an economic model of the US forestry and agricultural sector (FASOM-GHG). We find substantial impacts on productivity, commodity markets, and consumer and producer welfare for the stabilization scenario relative to unabated climate change, though the magnitude and direction of impacts vary across regions and commodities. Although there is variability in welfare impacts across climate simulations, we find positive net benefits from stabilization in all cases, with cumulative impacts ranging from 32.7 billion to 54.5 billion over the period 2015-2100. Our estimates contribute to the literature on potential benefits of GHG mitigation and can help inform policy decisions weighing alternative mitigation and adaptation actions.

The contribution of future agricultural trends in the US Midwest to global climate change mitigation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Thomson, Allison M.; Kyle, G. Page; Zhang, Xuesong

2014-01-19

Land use change is a complex response to changing environmental and socioeconomic systems. Historical drivers of land use change include changes in the natural resource availability of a region, changes in economic conditions for production of certain products and changing policies. Most recently, introduction of policy incentives for biofuel production have influenced land use change in the US Midwest, leading to concerns that bioenergy production systems may compete with food production and land conservation. Here we explore how land use may be impacted by future climate mitigation measures by nesting a high resolution agricultural model (EPIC – Environmental Policy Indicatormore » Climate) for the US Midwest within a global integrated assessment model (GCAM – Global Change Assessment Model). This approach is designed to provide greater spatial resolution and detailed agricultural practice information by focusing on the climate mitigation potential of agriculture and land use in a specific region, while retaining the global economic context necessary to understand the far ranging effects of climate mitigation targets. We find that until the simulated carbon prices are very high, the US Midwest has a comparative advantage in producing traditional food and feed crops over bioenergy crops. Overall, the model responds to multiple pressures by adopting a mix of future responses. We also find that the GCAM model is capable of simulations at multiple spatial scales and agricultural technology resolution, which provides the capability to examine regional response to global policy and economic conditions in the context of climate mitigation.« less

Parametric Simulations of the Great Dark Spots of Neptune

NASA Astrophysics Data System (ADS)

Deng, Xiaolong; Le Beau, R.

2006-09-01

Observations by Voyager II and the Hubble Space Telescope of the Great Dark Spots (GDS) of Neptune suggest that large vortices with lifespans of years are not uncommon occurrences in the atmosphere of Neptune. The variability of these features over time, in particular the complex motions of GDS-89, make them challenging candidates to simulate in atmospheric models. Previously, using the Explicit Planetary Isentropic-Coordinate (EPIC) General Circulation Model, LeBeau and Dowling (1998) simulated the GDS-like vortex features. Qualitatively, the drift, oscillation, and tail-like features of GDS-89 were recreated, although precise numerical matches were only achieved for the meridional drift rate. In 2001, Stratman et al. applied EPIC to simulate the formation of bright companion clouds to the Great Dark Spots. In 2006, Dowling et al. presented a new version of EPIC, which includes hybrid vertical coordinate, cloud physics, advanced chemistry, and new turbulence models. With the new version of EPIC, more observation results, and more powerful computers, it is the time to revisit CFD simulations of the Neptune's atmosphere and do more detailed work on GDS-like vortices. In this presentation, we apply the new version of EPIC to simulate GDS-89. We test the influences of different parameters in the EPIC model: potential vorticity gradient, wind profile, initial latitude, vortex shape, and vertical structure. The observed motions, especially the latitudinal drift and oscillations in orientation angle and aspect ratio, are used as diagnostics of these unobserved atmospheric conditions. Increased computing power allows for more refined and longer simulations and greater coverage of the parameter space than previous efforts. Improved quantitative results have been achieved, including voritices with near eight-day oscillations and comparable variations in shape to GDS-89. This research has been supported by Kentucky NASA EPSCoR.

Validation of Satellite Derived Cloud Properties Over the Southeastern Pacific

NASA Astrophysics Data System (ADS)

Ayers, J.; Minnis, P.; Zuidema, P.; Sun-Mack, S.; Palikonda, R.; Nguyen, L.; Fairall, C.

2005-12-01

Satellite measurements of cloud properties and the radiation budget are essential for understanding meso- and large-scale processes that determine the variability in climate over the southeastern Pacific. Of particular interest in this region is the prevalent stratocumulus cloud deck. The stratocumulus albedos are directly related to cloud microphysical properties that need to be accurately characterized in Global Climate Models (GCMs) to properly estimate the Earth's radiation budget. Meteorological observations in this region are sparse causing large uncertainties in initialized model fields. Remote sensing from satellites can provide a wealth of information about the clouds in this region, but it is vital to validate the remotely sensed parameters and to understand their relationship to other parameters that are not directly observed by the satellites. The variety of measurements from the R/V Roger Revelle during the 2003 STRATUS cruise and from the R/V Ron Brown during EPIC 2001 and the 2004 STRATUS cruises are suitable for validating and improving the interpretation of the satellite derived cloud properties. In this study, satellite-derived cloud properties including coverage, height, optical depth, and liquid water path are compared with in situ measurements taken during the EPIC and STRATUS cruises. The remotely sensed values are derived from Geostationary Operational Environmental Satellite (GOES) imager data, Moderate Resolution Imaging Spectroradiometer (MODIS) data from the Terra and Aqua satellites, and from the Visible and Infrared Scanner (VIRS) aboard the Tropical Rainfall Measuring Mission (TRMM) satellite. The products from this study will include regional monthly cloud climatologies derived from the GOES data for the 2003 and 2004 cruises as well as micro and macro physical cloud property retrievals centered over the ship tracks from MODIS and VIRS.

New Radiative Transfer Capability in the EPIC Atmospheric Model with Application to Saturn and Uranus

NASA Astrophysics Data System (ADS)

Dowling, Timothy Edward; Greathouse, T. K.; Sussman, M. G.; Chanover, N. J.

2010-10-01

We have adapted radiative transfer (RT) schemes from the gas-giant seasonal models of Greathouse et al. (EGU 2010) and Sussman et al. (AGU 2009) into the EPIC atmospheric model, and applied them to Saturn and Uranus. These additions give EPIC a hierarchy of RT options to account for solar heating via CH4 absorption from 5 microns to the UV, and radiative cooling due to thermal emission of CH4, C2H2, C2H6, and collision-induced opacity between 0 and 1600 cm-1. We have written an IDL tool to calculate radiative-equilibrium T(p) profiles for model initialization. We have ported the versatile DISORT RT model (Stamnes et al. 1988) from Fortran to C, and are incorporating it into an IDL post-processing tool to allow us to create synthetic spectra from EPIC output that accounts for thermal emission, reflected solar light, and aerosol and Rayleigh scattering. We give an update of applications to simulations of middle-atmosphere temperatures for Saturn and zonal-wind spin-up experiments for Uranus. This research is supported by NASA Planetary Atmospheres grant NNX08AE64G and NSF Planetary Astronomy grant AST-0807989.

Model-simulated and Satellite-derived Leaf Area Index (LAI) Comparisons Across Multiple Spatial Scales

NASA Astrophysics Data System (ADS)

Iiames, J. S., Jr.; Cooter, E. J.

2016-12-01

Leaf Area Index (LAI) is an important parameter in assessing vegetation structure for characterizing forest canopies over large areas at broad spatial scales using satellite remote sensing data. However, satellite-derived LAI products can be limited by obstructed atmospheric conditions yielding sub-optimal values, or complete non-returns. The United States Environmental Protection Agency's Exposure Methods and Measurements and Computational Exposure Divisions are investigating the viability of supplemental modelled LAI inputs into satellite-derived data streams to support various regional and local scale air quality models for retrospective and future climate assessments. In this present study, one-year (2002) of plot level stand characteristics at four study sites located in Virginia and North Carolina (USA) are used to calibrate species-specific plant parameters in a semi-empirical biogeochemical model. The Environmental Policy Integrated Climate (EPIC) model was designed primarily for managed agricultural field crop ecosystems, but also includes managed woody species that span both xeric and mesic sites (e.g., mesquite, pine, oak, etc.). LAI was simulated using EPIC at a 4 km2 and 12 km2 grid coincident with the regional Community Multiscale Air Quality Model (CMAQ) grid. LAI comparisons were made between model-simulated and MODIS-derived LAI. Field/satellite-upscaled LAI was also compared to the corresponding MODIS LAI value. Preliminary results show field/satellite-upscaled LAI (1 km2) was 1.5 to 3 times smaller than that with the corresponding 1 km2 MODIS LAI for all four sites across all dates, with the largest discrepancies occurring at leaf-out and leaf senescence periods. Simulated LAI/MODIS LAI comparison results will be presented at the conference. Disclaimer: This work is done in support of EPA's Sustainable Healthy Communities Research Program. The U.S. Environmental Protection Agency funded and conducted the research described in this paper. Although this work was reviewed by the EPA and has been approved for publication, it may not necessarily reflect official Agency policy. Mention of any trade names or commercial products does not constitute endorsement or recommendation for use. * Primary author and presenter (Iiames.john@epa.gov)

Corn-Based Ethanol Production and Environmental Quality: A Case of Iowa and the Conservation Reserve Program

NASA Astrophysics Data System (ADS)

Secchi, Silvia; Gassman, Philip W.; Williams, Jimmy R.; Babcock, Bruce A.

2009-10-01

Growing demand for corn due to the expansion of ethanol has increased concerns that environmentally sensitive lands retired from agricultural production and enrolled into the Conservation Reserve Program (CRP) will be cropped again. Iowa produces more ethanol than any other state in the United States, and it also produces the most corn. Thus, an examination of the impacts of higher crop prices on CRP land in Iowa can give insight into what we might expect nationally in the years ahead if crop prices remain high. We construct CRP land supply curves for various corn prices and then estimate the environmental impacts of cropping CRP land through the Environmental Policy Integrated Climate (EPIC) model. EPIC provides edge-of-field estimates of soil erosion, nutrient loss, and carbon sequestration. We find that incremental impacts increase dramatically as higher corn prices bring into production more and more environmentally fragile land. Maintaining current levels of environmental quality will require substantially higher spending levels. Even allowing for the cost savings that would accrue as CRP land leaves the program, a change in targeting strategies will likely be required to ensure that the most sensitive land does not leave the program.

Constraining the Origin of Phobos with the Elpasolite Planetary Ice and Composition Spectrometer (EPICS) - Simulated Performance

NASA Astrophysics Data System (ADS)

Nowicki, S. F.; Mesick, K.; Coupland, D. D. S.; Dallmann, N. A.; Feldman, W. C.; Stonehill, L. C.; Hardgrove, C.; Dibb, S.; Gabriel, T. S. J.; West, S.

2017-12-01

Elpasolites are a promising new family of inorganic scintillators that can detect both gamma rays and neutrons within a single detector volume, reducing the instrument size, weight, and power (SWaP), all of which are critical for planetary science missions. The ability to distinguish between neutron and gamma events is done through pulse shape discrimination (PSD). The Elpasolite Planetary Ice and Composition Spectrometer (EPICS) utilizes elpasolites in a next-generation, highly capable, low-SWaP gamma-ray and neutron spectrometer. We present simulated capabilities of EPICS sensitivities to neutron and gamma-rays, and demonstrate how EPICS can constrain the origin of Phobos between the following three main hypotheses: 1) accretion after a giant impact with Mars, 2) co-accretion with Mars, and 3) capture of an external body. The MCNP6 code was used to calculate the neutron and gamma-ray flux that escape the surface of Phobos, and GEANT4 to model the response of the EPICS instrument on orbit around Phobos.

Multinational Prospective Study of Patient-Reported Outcomes After Prostate Radiation Therapy: Detailed Assessment of Rectal Bleeding

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lee, Jae Y.; Daignault-Newton, Stephanie; Heath, Gerard

Purpose: The new short Expanded Prostate Cancer Index Composite for Clinical Practice (EPIC-CP) patient-reported health-related quality of life (HRQOL) tool has removed the rectal bleeding question from the previous much longer version, EPIC-26. Herein, we assess the impact of losing the dedicated rectal bleeding question in 2 independent prospective multicenter cohorts. Methods and Materials: In a prospective multicenter test cohort (n=865), EPIC-26 patient-reported HRQOL data were collected for 2 years after treatment from patients treated with prostate radiation therapy from 2003 to 2011. A second prospective multicenter cohort (n=442) was used for independent validation. A repeated-effects model was used to predictmore » the change from baseline in bowel summary scores from longer EPIC instruments using the change in EPIC-CP bowel summary scores with and without rectal bleeding scores. Results: Two years after radiation therapy, 91% of patients were free of bleeding, and only 2.6% reported bothersome bleeding problems. Correlations between EPIC-26 and EPIC-CP bowel scores were very high (r{sup 2}=0.90-0.96) and were statistically improved with the addition of rectal bleeding information (r{sup 2}=0.94-0.98). Considering all patients, only 0.2% of patients in the test cohort and 0.7% in the validation cohort reported bothersome bleeding and had clinically relevant HRQOL changes missed with EPIC-CP. However, of the 2.6% (n=17) of men with bothersome rectal bleeding in the test cohort, EPIC-CP failed to capture 1 patient (6%) as experiencing meaningful declines in bowel HRQOL. Conclusions: Modern prostate radiation therapy results in exceptionally low rates of bothersome rectal bleeding, and <1% of patients experience bothersome bleeding and are not captured by EPIC-CP as having meaningful HRQOL declines after radiation therapy. However, in the small subset of patients with bothersome rectal bleeding, the longer EPIC-26 should strongly be considered, given its superior performance in this patient subset.« less

The Electric Propulsion Interactions Code (EPIC)

NASA Technical Reports Server (NTRS)

Mikellides, I. G.; Mandell, M. J.; Kuharski, R. A.; Davis, V. A.; Gardner, B. M.; Minor, J.

2004-01-01

Science Applications International Corporation is currently developing the Electric Propulsion Interactions Code, EPIC, as part of a project sponsored by the Space Environments and Effects Program at the NASA Marshall Space Flight Center. Now in its second year of development, EPIC is an interactive computer tool that allows the construction of a 3-D spacecraft model, and the assessment of a variety of interactions between its subsystems and the plume from an electric thruster. These interactions may include erosion of surfaces due to sputtering and re-deposition of sputtered materials, surface heating, torque on the spacecraft, and changes in surface properties due to erosion and deposition. This paper describes the overall capability of EPIC and provides an outline of the physics and algorithms that comprise many of its computational modules.

Estimating plant available water for general crop simulations in ALMANAC/APEX/EPIC/SWAT

USDA-ARS?s Scientific Manuscript database

Process-based simulation models ALMANAC/APEX/EPIC/SWAT contain generalized plant growth subroutines to predict biomass and crop yield. Environmental constraints typically restrict plant growth and yield. Water stress is often an important limiting factor; it is calculated as the sum of water use f...

Apoplastic effectors secreted by two unrelated eukaryotic plant pathogens target the tomato defense protease Rcr3.

PubMed

Song, Jing; Win, Joe; Tian, Miaoying; Schornack, Sebastian; Kaschani, Farnusch; Ilyas, Muhammad; van der Hoorn, Renier A L; Kamoun, Sophien

2009-02-03

Current models of plant-pathogen interactions stipulate that pathogens secrete effector proteins that disable plant defense components known as virulence targets. Occasionally, the perturbations caused by these effectors trigger innate immunity via plant disease resistance proteins as described by the "guard hypothesis." This model is nicely illustrated by the interaction between the fungal plant pathogen Cladosporium fulvum and tomato. C. fulvum secretes a protease inhibitor Avr2 that targets the tomato cysteine protease Rcr3(pim). In plants that carry the resistance protein Cf2, Rcr3(pim) is required for resistance to C. fulvum strains expressing Avr2, thus fulfilling one of the predictions of the guard hypothesis. Another prediction of the guard hypothesis has not yet been tested. Considering that virulence targets are important components of defense, different effectors from unrelated pathogens are expected to evolve to disable the same host target. In this study we confirm this prediction using a different pathogen of tomato, the oomycete Phytophthora infestans that is distantly related to fungi such as C. fulvum. This pathogen secretes an array of protease inhibitors including EPIC1 and EPIC2B that inhibit tomato cysteine proteases. Here we show that, similar to Avr2, EPIC1 and EPIC2B bind and inhibit Rcr3(pim). However, unlike Avr2, EPIC1 and EPIC2B do not trigger hypersensitive cell death or defenses on Cf-2/Rcr3(pim) tomato. We also found that the rcr3-3 mutant of tomato that carries a premature stop codon in the Rcr3 gene exhibits enhanced susceptibility to P. infestans, suggesting a role for Rcr3(pim) in defense. In conclusion, our findings fulfill a key prediction of the guard hypothesis and suggest that the effectors Avr2, EPIC1, and EPIC2B secreted by two unrelated pathogens of tomato target the same defense protease Rcr3(pim). In contrast to C. fulvum, P. infestans appears to have evolved stealthy effectors that carry inhibitory activity without triggering plant innate immunity.

A Multi-Sector Assessment of the Effects of Climate Change at the Energy-Water-Land Nexus in the US

NASA Astrophysics Data System (ADS)

McFarland, J.; Sarofim, M. C.; Martinich, J.

2017-12-01

Rising temperatures and changing precipitation patterns due to climate change are projected to alter many sectors of the US economy. A growing body of research has examined these effects in the energy, water, and agricultural sectors. Rising summer temperatures increase the demand for electricity. Changing precipitation patterns effect the availability of water for hydropower generation, thermo-electric cooling, irrigation, and municipal and industrial consumption. A combination of changes to temperature and precipitation alter crop yields and cost-effective farming practices. Although a significant body of research exists on analyzing impacts to individual sectors, fewer studies examine the effects using a common set of assumptions (e.g., climatic and socio-economic) within a coupled modeling framework. The present analysis uses a multi-sector, multi-model framework with common input assumptions to assess the projected effects of climate change on energy, water, and land-use in the United States. The analysis assesses the climate impacts for across 5 global circulation models for representative concentration pathways (RCP) of 8.5 and 4.5 W/m2. The energy sector models - Pacific Northwest National Lab's Global Change Assessment Model (GCAM) and the National Renewable Energy Laboratory's Regional Energy Deployment System (ReEDS) - show the effects of rising temperature on energy and electricity demand. Electricity supply in ReEDS is also affected by the availability of water for hydropower and thermo-electric cooling. Water availability is calculated from the GCM's precipitation using the US Basins model. The effects on agriculture are estimated using both a process-based crop model (EPIC) and an agricultural economic model (FASOM-GHG), which adjusts water supply curves based on information from US Basins. The sectoral models show higher economic costs of climate change under RCP 8.5 than RCP 4.5 averaged across the country and across GCM's.

Importance of Vertical Coupling in Agricultural Models on Assimilation of Satellite-derived Soil Moisture

NASA Astrophysics Data System (ADS)

Mladenova, I. E.; Crow, W. T.; Teng, W. L.; Doraiswamy, P.

2010-12-01

Crop yield in crop production models is simulated as a function of weather, ground conditions and management practices and it is driven by the amount of nutrients, heat and water availability in the root-zone. It has been demonstrated that assimilation of satellite-derived soil moisture data has the potential to improve the model root-zone soil water (RZSW) information. However, the satellite estimates represent the moisture conditions of the top 3 cm to 5 cm of the soil profile depending on system configuration and surface conditions (i.e. soil wetness, density of the canopy cover, etc). The propagation of this superficial information throughout the profile will depend on the model physics. In an Ensemble Kalman Filter (EnKF) data assimilation system, as the one examined here, the update of each soil layer is done through the Kalman Gain, K. K is a weighing factor that determines how much correction will be performed on the forecasts. Furthermore, K depends on the strength of the correlation between the surface and the root-zone soil moisture; the stronger this correlation is, the more observations will impact the analysis. This means that even if the satellite-derived product has higher sensitivity and accuracy as compared to the model estimates, the improvement of the RZSW will be negligible if the surface-root zone coupling is weak, where the later is determined by the model subsurface physics. This research examines: (1) the strength of the vertical coupling in the Environmental Policy Integrated Climate (EPIC) model over corn and soybeans covered fields in Iowa, US, (2) the potential to improve EPIC RZSW information through assimilation of satellite soil moisture data derived from the Advanced Microwave Scanning Radiometer (AMSR-E) and (3) the impact of the vertical coupling on the EnKF performance.

Potential for Woody Bioenergy Crops Grown on Marginal Lands in the US Midwest to Reduce Carbon Emissions

NASA Astrophysics Data System (ADS)

Sahajpal, R.; Hurtt, G. C.; Fisk, J. P.; Izaurralde, R. C.; Zhang, X.

2012-12-01

While cellulosic biofuels are widely considered to be a low carbon energy source for the future, a comprehensive assessment of the environmental sustainability of existing and future biofuel systems is needed to assess their utility in meeting US energy and food needs without exacerbating environmental harm. To assess the carbon emission reduction potential of cellulosic biofuels, we need to identify lands that are initially not storing large quantities of carbon in soil and vegetation but are capable of producing abundant biomass with limited management inputs, and accurately model forest production rates and associated input requirements. Here we present modeled results for carbon emission reduction potential and cellulosic ethanol production of woody bioenergy crops replacing existing native prairie vegetation grown on marginal lands in the US Midwest. Marginal lands are selected based on soil properties describing use limitation, and are extracted from the SSURGO (Soil Survey Geographic) database. Yield estimates for existing native prairie vegetation on marginal lands modeled using the process-based field-scale model EPIC (Environmental Policy Integrated Climate) amount to ~ 6.7±2.0 Mg ha-1. To model woody bioenergy crops, the individual-based terrestrial ecosystem model ED (Ecosystem Demography) is initialized with the soil organic carbon stocks estimated at the end of the EPIC simulation. Four woody bioenergy crops: willow, southern pine, eucalyptus and poplar are parameterized in ED. Sensitivity analysis of model parameters and drivers is conducted to explore the range of carbon emission reduction possible with variation in woody bioenergy crop types, spatial and temporal resolution. We hypothesize that growing cellulosic crops on these marginal lands can provide significant water quality, biodiversity and GHG emissions mitigation benefits, without accruing additional carbon costs from the displacement of food and feed production.

Vegetation Earth System Data Record from DSCOVR EPIC Observations

NASA Astrophysics Data System (ADS)

Knyazikhin, Y.; Song, W.; Yang, B.; Mottus, M.; Rautiainen, M.; Stenberg, P.

2017-12-01

The NASA's Earth Polychromatic Imaging Camera (EPIC) onboard NOAA's Deep Space Climate Observatory (DSCOVR) mission was launched on February 11, 2015 to the Sun-Earth Lagrangian L1 point where it began to collect radiance data of the entire sunlit Earth every 65 to 110 min in June 2015. It provides imageries in near backscattering directions with the scattering angle between 168° and 176° at ten ultraviolet to near infrared (NIR) narrow spectral bands centered at 317.5 (band width 1.0) nm, 325.0 (2.0) nm, 340.0 (3.0) nm, 388.0 (3.0) nm, 433.0 (3.0) nm, 551.0 (3.0) nm, 680.0 (3.0) nm, 687.8 (0.8) nm, 764.0 (1.0) nm and 779.5 (2.0) nm. This poster presents current status of the Vegetation Earth System Data Record of global Leaf Area Index (LAI), solar zenith angle dependent Sunlit Leaf Area Index (SLAI), Fraction vegetation absorbed Photosynthetically Active Radiation (FPAR) and Normalized Difference Vegetation Index (NDVI) derived from the DSCOVR EPIC observations. Whereas LAI is a standard product of many satellite missions, the SLAI is a new satellite-derived parameter. Sunlit and shaded leaves exhibit different radiative response to incident Photosynthetically Active Radiation (400-700 nm), which in turn triggers various physiological and physical processes required for the functioning of plants. FPAR, LAI and SLAI are key state parameters in most ecosystem productivity models and carbon/nitrogen cycle. The product at 10 km sinusoidal grid and 65 to 110 min temporal frequency as well as accompanying Quality Assessment (QA) variables will be publicly available from the NASA Langley Atmospheric Science Data Center. The Algorithm Theoretical Basis (ATBD) and product validation strategy are also discussed in this poster.

1900 America: Historical Voices, Poetic Visions. Learning Page Lesson Plan.

ERIC Educational Resources Information Center

Beckmann, Chris; Gehler, David

To better understand the turn-of-the-century United States, this interdisciplinary lesson (covering 6-8 weeks) integrates use of primary resources with historical and literary analysis. Students work in groups and express themselves creatively through a multi-media epic poem. The artistic models for the students' multi-media epic poem are Walt…

Education for Change: Epic Charter School

ERIC Educational Resources Information Center

EDUCAUSE, 2015

2015-01-01

The student-centered school model of Epic Charter School in Oakland, California, framed around a hero's journey empowers middle school students with sense of unity and purpose in life, where they can feel part of a culture with a shared experience and with more opportunities to experiences growth and accomplishment. Design and engineering is front…

“Nitrogen Budgets for the Mississippi River Basin using the linked EPIC-CMAQ-NEWS Models”

EPA Science Inventory

Presentation on the results from the 3 linked models, EPIC (USDA), CMAQ and NEWS to analyze a scenario of increased corn production related to biofuels together with Clean Air Act emission reductions across the US and the resultant effect on nitrogen loading to the Gulf of Mexico...

Assessments of Future Maize Yield Potential Changes in the Korean Peninsula Using Multiple Crop Models

NASA Astrophysics Data System (ADS)

Kim, S. H.; Lim, C. H.; Kim, J.; Lee, W. K.; Kafatos, M.

2016-12-01

The Korean Peninsula has unique agricultural environment due to the differences of political and socio-economical system between Republic of Korea (SK, hereafter) and Democratic Peoples' Republic of Korea (NK, hereafter). NK has been suffering lack of food supplies caused by natural disasters, land degradation and political failure. The neighboring developed country SK has better agricultural system but very low food self-sufficiency rate. Maize is an important crop in both countries since it is staple food for NK and SK is No. 2 maize importing country in the world after Japan. Therefore, evaluating maize yield potential (Yp) in the two distinct regions is essential to assess food security under climate change and variability. In this study, we utilized multiple process-based crop models, having ability of regional scale assessment, to evaluate maize Yp and assess the model uncertainties -EPIC, GEPIC, DSSAT, and APSIM model that has capability of regional scale expansion (apsimRegions). First we evaluated each crop model for 3 years from 2012 to 2014 using reanalysis data (RDAPS; Regional Data Assimilation and Prediction System produced by Korea Meteorological Agency) and observed yield data. Each model performances were compared over the different regions in the Korean Peninsula having different local climate characteristics. To quantify of the major influence of at each climate variables, we also conducted sensitivity test using 20 years of climatology in historical period from 1981 to 2000. Lastly, the multi-crop model ensemble analysis was performed for future period from 2031 to 2050. The required weather variables projected for mid-century were employed from COordinated Regional climate Downscaling EXperiment (CORDEX) East Asia. The high-resolution climate data were obtained from multiple regional climate models (RCM) driven by multiple climate scenarios projected from multiple global climate models (GCMs) in conjunction with multiple greenhouse gas concentration pathways. The results indicate that the projected Yp in the Korean peninsula is significantly changed comparing to the historical period and proper adaptation strategies such as optimized planting dates can considerably alleviate Yp decrease.

Assessments of Maize Yield Potential in the Korean Peninsula Using Multiple Crop Models

NASA Astrophysics Data System (ADS)

Kim, S. H.; Myoung, B.; Lim, C. H.; Lee, S. G.; Lee, W. K.; Kafatos, M.

2015-12-01

The Korean Peninsular has unique agricultural environments due to the differences in the political and socio-economical systems between the Republic of Korea (SK, hereafter) and the Democratic Peoples' Republic of Korea (NK, hereafter). NK has been suffering from the lack of food supplies caused by natural disasters, land degradation and failed political system. The neighboring developed country SK has a better agricultural system but very low food self-sufficiency rate (around 1% of maize). Maize is an important crop in both countries since it is staple food for NK and SK is No. 2 maize importing country in the world after Japan. Therefore evaluating maize yield potential (Yp) in the two distinct regions is essential to assess food security under climate change and variability. In this study, we have utilized multiple process-based crop models capable of regional-scale assessments to evaluate maize Yp over the Korean Peninsula - the GIS version of EPIC model (GEPIC) and APSIM model that can be expanded to regional scales (APSIM regions). First we evaluated model performance and skill for 20 years from 1991 to 2010 using reanalysis data (Local Data Assimilation and Prediction System (LDAPS); 1.5km resolution) and observed data. Each model's performances were compared over different regions within the Korean Peninsula of different regional climate characteristics. To quantify the major influence of individual climate variables, we also conducted a sensitivity test using 20 years of climatology. Lastly, a multi-model ensemble analysis was performed to reduce crop model uncertainties. The results will provide valuable information for estimating the climate change or variability impacts on Yp over the Korean Peninsula.

NASA Captures 'EPIC' Earth Image

NASA Image and Video Library

2017-12-08

A NASA camera on the Deep Space Climate Observatory satellite has returned its first view of the entire sunlit side of Earth from one million miles away. This color image of Earth was taken by NASA’s Earth Polychromatic Imaging Camera (EPIC), a four megapixel CCD camera and telescope. The image was generated by combining three separate images to create a photographic-quality image. The camera takes a series of 10 images using different narrowband filters -- from ultraviolet to near infrared -- to produce a variety of science products. The red, green and blue channel images are used in these color images. The image was taken July 6, 2015, showing North and Central America. The central turquoise areas are shallow seas around the Caribbean islands. This Earth image shows the effects of sunlight scattered by air molecules, giving the image a characteristic bluish tint. The EPIC team is working to remove this atmospheric effect from subsequent images. Once the instrument begins regular data acquisition, EPIC will provide a daily series of Earth images allowing for the first time study of daily variations over the entire globe. These images, available 12 to 36 hours after they are acquired, will be posted to a dedicated web page by September 2015. The primary objective of DSCOVR, a partnership between NASA, the National Oceanic and Atmospheric Administration (NOAA) and the U.S. Air Force, is to maintain the nation’s real-time solar wind monitoring capabilities, which are critical to the accuracy and lead time of space weather alerts and forecasts from NOAA. For more information about DSCOVR, visit: www.nesdis.noaa.gov/DSCOVR/

'EPIC' View of Africa and Europe from a Million Miles Away

NASA Image and Video Library

2015-07-29

Africa is front and center in this image of Earth taken by a NASA camera on the Deep Space Climate Observatory (DSCOVR) satellite. The image, taken July 6 from a vantage point one million miles from Earth, was one of the first taken by NASA’s Earth Polychromatic Imaging Camera (EPIC). Central Europe is toward the top of the image with the Sahara Desert to the south, showing the Nile River flowing to the Mediterranean Sea through Egypt. The photographic-quality color image was generated by combining three separate images of the entire Earth taken a few minutes apart. The camera takes a series of 10 images using different narrowband filters -- from ultraviolet to near infrared -- to produce a variety of science products. The red, green and blue channel images are used in these Earth images. The DSCOVR mission is a partnership between NASA, the National Oceanic and Atmospheric Administration (NOAA) and the U.S. Air Force, with the primary objective to maintain the nation’s real-time solar wind monitoring capabilities, which are critical to the accuracy and lead time of space weather alerts and forecasts from NOAA. DSCOVR was launched in February to its planned orbit at the first Lagrange point or L1, about one million miles from Earth toward the sun. It’s from that unique vantage point that the EPIC instrument is acquiring images of the entire sunlit face of Earth. Data from EPIC will be used to measure ozone and aerosol levels in Earth’s atmosphere, cloud height, vegetation properties and a variety of other features. Image Credit: NASA

Retrieving Volcanic SO2 from the 4-UV channels on DSCOVR/EPIC

NASA Astrophysics Data System (ADS)

Fisher, B. L.; Krotkov, N. A.; Carn, S. A.; Taylor, S.; Li, C.; Bhartia, P. K.; Huang, L. K.; Haffner, D. P.

2017-12-01

Since arriving at the L1 Lagrange point in June 2015, the Earth Polychromatic Imaging Camera (EPIC) on board the Deep Space Climate Observatory (DSCOVR) has been collecting continuous full disk images of the sunlit earth from a distance of 1.5 million km. EPIC is a 10-band spectroradiometer that that has a field of view (FoV) at the earth's surface of about 25 km, providing a unique opportunity to observe the initial appearance and evolution of SO2 plumes from volcanic eruptions at about 90 minute temporal resolution. Our algorithm uses the 317.5, 325, 340 and 388 nm UV channels on EPIC to retrieve volcanic SO2, total column ozone, Lambertian equivalent reflectivity and its spectral dependence. The MS_SO2 algorithm has been successfully applied to the data from legacy and current NASA missions (e.g., Nimbus7/TOMS, SNPP/OMPS, and Aura/OMI). The separation between ozone and SO2 is possible due differences in the cross sections at the two shortest UV channels. The images for each spectral channel are not perfectly aligned due to the earth's rotation, geo-rectification, cloud noise, exposure time and spacecraft jitter. These issues introduce additional noise, for a multi-channel inversion. In this presentation, we describe some modifications to the algorithm that attempt to account for these issues. By comparing the plume areas, mass tonnage and peak SO2 values from other low earth observing satellites, it is shown that the algorithm significantly improves the identification of the plume, while eliminating false positives.

Simulating microbial denitrification with EPIC: Model description and evaluation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Izaurralde, R. Cesar; McGill, William B.; Williams, Jimmy R.

Here, microbial denitrification occurs in anaerobic soil microsites and aquatic environments leading to production of N 2O and N 2 gases, which eventually escape to the atmosphere. Atmospheric concentrations of N 2O have been on the rise since the beginning of the industrial revolution due to large-scale manipulations of the N cycle in managed ecosystems, especially the use of synthetic nitrogenous fertilizer. Here we document and test a microbial denitrification model identified as IMWJ and implemented as a submodel in the EPIC terrestrial ecosystem model. The IMWJ model is resolved on an hourly time step using the concept that Cmore » oxidation releases electrons that drive a demand for electron acceptors such as O 2 and oxides of N (NO 3 -, NO 2 -, and N 2O). A spherical diffusion approach is used to describe O 2 transport to microbial surfaces while a cylindrical diffusion method is employed to depict O 2 transport to root surfaces. Oxygen uptake by microbes and roots is described with Michaelis-Menten kinetic equations. If insufficient O 2 is present to accept all electrons generated, the deficit for electron acceptors may be met by oxides of nitrogen, if available. The movement of O 2, CO 2 and N 2O through the soil profile is modeled using the gas transport equation solved on hourly or sub-hourly time steps. Bubbling equations also move N 2O and N 2 through the liquid phase to the soil surface under highly anaerobic conditions. We used results from a 2-yr field experiment conducted in 2007 and 2008 at a field site in southwest Michigan to test the ability of EPIC, with the IMWJ option, to capture the non-linear response of N 2O fluxes as a function of increasing rates of N application to maize. Nitrous oxide flux, soil inorganic N, and ancillary data from 2007 were used for EPIC calibration while 2008 data were used for independent model validation. Overall, EPIC reproduced well the timing and magnitude of N 2O fluxes and NO 3 - mass in surficial soil layers after N fertilization. Although similar in magnitude, daily and cumulative simulated N 2O fluxes followed a linear trend instead of the observed exponential trend. Further model testing of EPIC+IMWJ, alone or in ensembles with other models, using data from comprehensive experiments will be essential to discover areas of model improvement and increase the accuracy of N 2O predictions under a wide range of environmental conditions.« less

Simulating microbial denitrification with EPIC: Model description and evaluation

DOE PAGES

Izaurralde, R. Cesar; McGill, William B.; Williams, Jimmy R.; ...

2017-06-28

Here, microbial denitrification occurs in anaerobic soil microsites and aquatic environments leading to production of N 2O and N 2 gases, which eventually escape to the atmosphere. Atmospheric concentrations of N 2O have been on the rise since the beginning of the industrial revolution due to large-scale manipulations of the N cycle in managed ecosystems, especially the use of synthetic nitrogenous fertilizer. Here we document and test a microbial denitrification model identified as IMWJ and implemented as a submodel in the EPIC terrestrial ecosystem model. The IMWJ model is resolved on an hourly time step using the concept that Cmore » oxidation releases electrons that drive a demand for electron acceptors such as O 2 and oxides of N (NO 3 -, NO 2 -, and N 2O). A spherical diffusion approach is used to describe O 2 transport to microbial surfaces while a cylindrical diffusion method is employed to depict O 2 transport to root surfaces. Oxygen uptake by microbes and roots is described with Michaelis-Menten kinetic equations. If insufficient O 2 is present to accept all electrons generated, the deficit for electron acceptors may be met by oxides of nitrogen, if available. The movement of O 2, CO 2 and N 2O through the soil profile is modeled using the gas transport equation solved on hourly or sub-hourly time steps. Bubbling equations also move N 2O and N 2 through the liquid phase to the soil surface under highly anaerobic conditions. We used results from a 2-yr field experiment conducted in 2007 and 2008 at a field site in southwest Michigan to test the ability of EPIC, with the IMWJ option, to capture the non-linear response of N 2O fluxes as a function of increasing rates of N application to maize. Nitrous oxide flux, soil inorganic N, and ancillary data from 2007 were used for EPIC calibration while 2008 data were used for independent model validation. Overall, EPIC reproduced well the timing and magnitude of N 2O fluxes and NO 3 - mass in surficial soil layers after N fertilization. Although similar in magnitude, daily and cumulative simulated N 2O fluxes followed a linear trend instead of the observed exponential trend. Further model testing of EPIC+IMWJ, alone or in ensembles with other models, using data from comprehensive experiments will be essential to discover areas of model improvement and increase the accuracy of N 2O predictions under a wide range of environmental conditions.« less

Manufacture and Preparation of Test Specimens for Johnson-Cook Material Characterization

DTIC Science & Technology

2013-01-01

modeling and simulation, and will be included in the Elastic Plastic Impact Code (EPIC) library. This report describes the welding and machining...used by the government for ballistic, blast and other types of modeling and simulation, and will be included in the Elastic Plastic Impact Code (EPIC...made of H13 tool steel with a scrolled pin and shoulder (See Figure 2-3) was used however the different heat requirements of the materials required

Quality assurance of the international computerised 24 h dietary recall method (EPIC-Soft).

PubMed

Crispim, Sandra P; Nicolas, Genevieve; Casagrande, Corinne; Knaze, Viktoria; Illner, Anne-Kathrin; Huybrechts, Inge; Slimani, Nadia

2014-02-01

The interview-administered 24 h dietary recall (24-HDR) EPIC-Soft® has a series of controls to guarantee the quality of dietary data across countries. These comprise all steps that are part of fieldwork preparation, data collection and data management; however, a complete characterisation of these quality controls is still lacking. The present paper describes in detail the quality controls applied in EPIC-Soft, which are, to a large extent, built on the basis of the EPIC-Soft error model and are present in three phases: (1) before, (2) during and (3) after the 24-HDR interviews. Quality controls for consistency and harmonisation are implemented before the interviews while preparing the seventy databases constituting an EPIC-Soft version (e.g. pre-defined and coded foods and recipes). During the interviews, EPIC-Soft uses a cognitive approach by helping the respondent to recall the dietary intake information in a stepwise manner and includes controls for consistency (e.g. probing questions) as well as for completeness of the collected data (e.g. system calculation for some unknown amounts). After the interviews, a series of controls can be applied by dietitians and data managers to further guarantee data quality. For example, the interview-specific 'note files' that were created to track any problems or missing information during the interviews can be checked to clarify the information initially provided. Overall, the quality controls employed in the EPIC-Soft methodology are not always perceivable, but prove to be of assistance for its overall standardisation and possibly for the accuracy of the collected data.

Assessment of Cropland Water and Nitrogen Balance from Climate Change in Korea Peninsular

NASA Astrophysics Data System (ADS)

Lim, C. H.; Song, C.; Kim, T.; Lee, W. K.; Jeon, S. W.

2015-12-01

If crop growth is based on cropland productivity, the changes are due to changes in water and nitrogen balance from climate. In this study, order to estimation the change in cropland water and nitrogen balance in Korea peninsular using meteorological data observed last 30 years(1984-2013y). And we used soil, topography and management data about cropland. So as to estimating water and nitrogen variables, we used to the GIS based EPIC model that is major crop model in agro-ecosystem modelling field. Among the much of water and nitrogen variables, we selected to evapotranspiration, runoff, precipitation, nitrification, N lost, N contents and denitrification for this analysis. This selected variables associate with cropland water and nitrogen balance.First result, we can found the water balance changes in Korea peninsular, especially South Korea better condition than North Korea. In North Korea, evapotranspiration and precipitation result were lower than South Korea, but runoff result was bigger than South Korea. And we got a result about nitrogen balance changes in Korea peninsular from climate. In spatially, South and North Korea showed to similar condition on nitrogen balance in whole period. But in temporally, showed negative trends as time goes on, it caused by climate change. Overall condition of water and nitrogen balance on last 30 years in Korea peninsular, South Korea showed better condition than North Korea. Water and nitrogen balance change means have to be changed on agriculture management action, such as irrigation and fertilizer. In future period, climate change will cause a large effect to cropland water and nitrogen balance in mid-latitude area, so we have to prepare the change of this field for wise adaptation by climate change.

How do climatic and management factors affect agricultural ecosystem services? A case study in the agro-pastoral transitional zone of northern China.

PubMed

Qiao, Jianmin; Yu, Deyong; Wu, Jianguo

2018-02-01

Agricultural ecosystem management needs to ensure food production and minimize soil erosion and nitrogen (N) leaching under climate change and increasingly intensive human activity. Thus, the mechanisms through which climatic and management factors affect crop production, soil erosion, and N leaching must be understood in order to ensure food security and sustainable agricultural development. In this study, we adopted the GIS-based Environmental Policy Integrated Climate (EPIC) model to simulate crop production, soil erosion, and N leaching, and used a partial least squares regression model to evaluate the contributions of climate variables (solar radiation, precipitation, wind speed, relative humidity, and maximum and minimum temperature) and management factors (irrigation, fertilization, and crop cultivation area) on agricultural ecosystem services (AES) in the agro-pastoral transitional zone (APTZ) of northern China. The results indicated that crop production and N leaching markedly increased, whereas soil erosion declined from 1980 to 2010 in the APTZ. Management factors had larger effects on the AES than climate change. Among the climatic variables, daily minimum temperature was the most important contributor to the variations in ecosystem services of wheat, maize, and rice. Spatial changes in the cultivated area most affected crop production, soil erosion, and N leaching for majority of the cultivated areas of the three crops, except for the wheat-cultivated area, where the dominant factor for N leaching was fertilization. Although a tradeoff existed between crop production and negative environmental effects, compromises were possible. These findings provide new insights into the effects of climatic and management factors on AES, and have practical implications for improving crop production while minimizing negative environmental impacts. Copyright © 2017 Elsevier B.V. All rights reserved.

A Marginal Cost Based "Social Cost of Carbon" Provides Inappropriate Guidance in a World That Needs Rapid and Deep Decarbonization

NASA Astrophysics Data System (ADS)

Morgan, M. G.; Vaishnav, P.; Azevedo, I. L.; Dowlatabadi, H.

2016-12-01

Rising temperatures and changing precipitation patterns due to climate change are projected to alter many sectors of the US economy. A growing body of research has examined these effects in the energy, water, and agricultural sectors. Rising summer temperatures increase the demand for electricity. Changing precipitation patterns effect the availability of water for hydropower generation, thermo-electric cooling, irrigation, and municipal and industrial consumption. A combination of changes to temperature and precipitation alter crop yields and cost-effective farming practices. Although a significant body of research exists on analyzing impacts to individual sectors, fewer studies examine the effects using a common set of assumptions (e.g., climatic and socio-economic) within a coupled modeling framework. The present analysis uses a multi-sector, multi-model framework with common input assumptions to assess the projected effects of climate change on energy, water, and land-use in the United States. The analysis assesses the climate impacts for across 5 global circulation models for representative concentration pathways (RCP) of 8.5 and 4.5 W/m2. The energy sector models - Pacific Northwest National Lab's Global Change Assessment Model (GCAM) and the National Renewable Energy Laboratory's Regional Energy Deployment System (ReEDS) - show the effects of rising temperature on energy and electricity demand. Electricity supply in ReEDS is also affected by the availability of water for hydropower and thermo-electric cooling. Water availability is calculated from the GCM's precipitation using the US Basins model. The effects on agriculture are estimated using both a process-based crop model (EPIC) and an agricultural economic model (FASOM-GHG), which adjusts water supply curves based on information from US Basins. The sectoral models show higher economic costs of climate change under RCP 8.5 than RCP 4.5 averaged across the country and across GCM's.

Synoptic ozone, cloud reflectivity, and erythemal irradiance from sunrise to sunset for the whole earth as viewed by the DSCOVR spacecraft from the earth-sun Lagrange 1 orbit

NASA Astrophysics Data System (ADS)

Herman, Jay; Huang, Liang; McPeters, Richard; Ziemke, Jerry; Cede, Alexander; Blank, Karin

2018-01-01

EPIC (Earth Polychromatic Imaging Camera) on board the DSCOVR (Deep Space Climate Observatory) spacecraft is the first earth science instrument located near the earth-sun gravitational plus centrifugal force balance point, Lagrange 1. EPIC measures earth-reflected radiances in 10 wavelength channels ranging from 317.5 to 779.5 nm. Of these channels, four are in the UV range 317.5, 325, 340, and 388 nm, which are used to retrieve O3, 388 nm scene reflectivity (LER: Lambert equivalent reflectivity), SO2, and aerosol properties. These new synoptic quantities are retrieved for the entire sunlit globe from sunrise to sunset multiple times per day as the earth rotates in EPIC's field of view. Retrieved ozone amounts agree with ground-based measurements and satellite data to within 3 %. The ozone amounts and LER are combined to derive the erythemal irradiance for the earth's entire sunlit surface at a nadir resolution of 18 × 18 km2 using a computationally efficient approximation to a radiative transfer calculation of irradiance. The results show very high summertime values of the UV index (UVI) in the Andes and Himalayas (greater than 18), and high values of UVI near the Equator at equinox.

Improving World Agricultural Supply and Demand Estimates by Integrating NASA Remote Sensing Soil Moisture Data into USDA World Agricultural Outlook Board Decision Making Environment

NASA Astrophysics Data System (ADS)

Teng, W. L.; de Jeu, R. A.; Doraiswamy, P. C.; Kempler, S. J.; Shannon, H. D.

2009-12-01

A primary goal of the U.S. Department of Agriculture (USDA) is to expand markets for U.S. agricultural products and support global economic development. The USDA World Agricultural Outlook Board (WAOB) supports this goal by developing monthly World Agricultural Supply and Demand Estimates (WASDE) for the U.S. and major foreign producing countries. Because weather has a significant impact on crop progress, conditions, and production, WAOB prepares frequent agricultural weather assessments, in a GIS-based, Global Agricultural Decision Support Environment (GLADSE). The main objective of this project, thus, is to improve WAOB's estimates by integrating NASA remote sensing soil moisture observations and research results into GLADSE. Soil moisture is a primary data gap at WAOB. Soil moisture data, generated by the Land Parameter Retrieval Model (LPRM, developed by NASA GSFC and Vrije Universiteit Amsterdam) and customized to WAOB's requirements, will be directly integrated into GLADSE, as well as indirectly by first being integrated into USDA Agricultural Research Service (ARS)'s Environmental Policy Integrated Climate (EPIC) crop model. The LPRM-enhanced EPIC will be validated using three major agricultural regions important to WAOB and then integrated into GLADSE. Project benchmarking will be based on retrospective analyses of WAOB's analog year comparisons. The latter are between a given year and historical years with similar weather patterns. WAOB is the focal point for economic intelligence within the USDA. Thus, improving WAOB's agricultural estimates by integrating NASA satellite observations and model outputs will visibly demonstrate the value of NASA resources and maximize the societal benefits of NASA investments.

Studies for Emerging Electric Grid Cybersecurity Technologies using Modeling and Simulation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Francia, X.

The Energy Commission is currently soliciting ideas and stakeholder input for the 2018 – 2020 EPIC Triennial Investment Plan. For those that would like to submit an idea for consideration in the 2018-2020 EPIC Triennial Plan, we ask that you complete the form below. Submittals are due by 5:00 p.m. on February 10, 2017.

From a Million Miles Away, NASA Camera Shows Moon Crossing Face of Earth

NASA Image and Video Library

2015-08-05

This animation still image shows the far side of the moon, illuminated by the sun, as it crosses between the DISCOVR spacecraft's Earth Polychromatic Imaging Camera (EPIC) camera and telescope, and the Earth - one million miles away. Credits: NASA/NOAA A NASA camera aboard the Deep Space Climate Observatory (DSCOVR) satellite captured a unique view of the moon as it moved in front of the sunlit side of Earth last month. The series of test images shows the fully illuminated “dark side” of the moon that is never visible from Earth. The images were captured by NASA’s Earth Polychromatic Imaging Camera (EPIC), a four megapixel CCD camera and telescope on the DSCOVR satellite orbiting 1 million miles from Earth. From its position between the sun and Earth, DSCOVR conducts its primary mission of real-time solar wind monitoring for the National Oceanic and Atmospheric Administration (NOAA).

The Electric Propulsion Interactions Code (EPIC): A Member of the NASA Space Environment and Effects Program (SEE) Toolset

NASA Technical Reports Server (NTRS)

Mikellides, Ioannis G.; Mandell, Myron J.; Kuharski, Robert A.; Davis, D. A.; Gardner, Barbara M.; Minor, Jody

2003-01-01

Science Applications International Corporation is currently developing the Electric Propulsion Interactions Code, EPIC, as part of a project sponsored by the Space Environments and Effects Program at NASA Marshall Space Flight Center. Now in its second year of development, EPIC is an interactive computer toolset that allows the construction of a 3-D spacecraft model, and the assessment of a variety of interactions between its subsystems and the plume from an electric thruster. This paper reports on the progress of EPZC including the recently added ability to exchange results the NASA Charging Analyzer Program, Nascap-2k. The capability greatly enhances EPIC's range of applicability. Expansion of the toolset's various physics models proceeds in parallel with the overall development of the software. Also presented are recent upgrades of the elastic scattering algorithm in the electric propulsion Plume Tool. These upgrades are motivated by the need to assess the effects of elastically scattered ions on the SIC for ion beam energies that exceed loo0 eV. Such energy levels are expected in future high-power (>10 kW) ion propulsion systems empowered by nuclear sources.

Evaluation of water productivity under climate change in irrigated areas of the arid Northwest China using an assemble statistical downscaling method and an agro-hydrological model

NASA Astrophysics Data System (ADS)

Liu, Liu; Guo, Zezhong; Huang, Guanhua

2018-06-01

The Heihe River Basin (HRB) is the second largest inland river basin, located in the arid region of Northwest China with a serious water shortage. Evaluation of water productivity will provide scientific implications for agricultural water-saving in irrigated areas of the arid region under climate change. Based on observed meteorological data, 23 GCMs outputs and the ERA-40 reanalysis data, an assemble statistical downscaling model was developed to generate climate change scenarios under RCP2.6, RCP4.5, RCP8.5 respectively, which were then used to drive the SWAP-EPIC model to simulate crop growth in the irrigated areas of the middle HRB for the future period from 2018 to 2047. Crop yield showed an increasing trend, while crop water consumption decreased gradually in Gaotai and Ganzhou irrigated areas. The water productivity in future 30 years showed an increasing trend in both Gaotai and Ganzhou areas, with the most significant increase under RCP4.5 scenario, which were both larger than 2 kg m-3. Compared with that of the period from 2012 to 2015, the water productivity during 2018-2047 under three RCP scenarios increased by 9.2, 14.3 and 11.8 % in the Gaotai area, and 15.4, 21.6, 19.9 % in the Ganzhou area, respectively.

Estimation of Leaf Area Index and its Sunlit Portion from DSCOVR EPIC data

NASA Astrophysics Data System (ADS)

Knyazikhin, Y.; Yang, B.; Mottus, M.; Rautiainen, M.; Stenberg, P.; Yan, L.; Chen, C.; Yan, K.; Park, T.; Myneni, R. B.; Song, W.

2016-12-01

The NASA's Earth Polychromatic Imaging Camera (EPIC) onboard NOAA's Deep Space Climate Observatory (DSCOVR) mission was launched on February 11, 2015 to the Sun-Earth Lagrangian L1 point where it began to collect radiance data of the entire sunlit Earth at 16 km resolution (in equatorial zone) every 65 to 110 min in June 2015. It provides imageries in near backscattering directions with the scattering angle between 168o and 176o at ten UV to Near-IR narrow spectral bands centered at 317.5 (band width 1.0) nm, 325.0 (1.0) nm, 340.0 (3.0) nm, 388.0 (3.0) nm, 433.0 (3.0) nm, 551.0 (3.0) nm, 680.0 (1.7) nm, 687.8 (0.6) nm, 764.0 (1.7) nm and 779.5 (2.0) nm. This poster presents the theoretical basis of the algorithm designed for the generation of leaf area index (LAI) and diurnal course of sunlit leaf area index (SLAI) from EPIC Bidirectional Reflectance Factor of vegetated land. LAI and SLAI are defined as the total hemi-surface and sunlit leaf semi-surface per unit ground area. Whereas LAI is a standard product of many satellite the SLAI is a new satellite-derived parameter. Sunlit and shaded leaves exhibit different radiative response to incident Photosynthetically Active Radiation (400-700 nm), which in turn triggers various physiological and physical processes required for the functioning of plants. Leaf area and its sunlit portion are key state parameters in most ecosystem productivity and carbon/nitrogen cycle. Status of the EPIC LAI/SLAI product and its validation strategy are also discussed in this poster.

Studying the Structure of Condensables Jupiter’s 24deg Jet

NASA Astrophysics Data System (ADS)

Flom, Abigail; Sankar, Ramanakumar; Palotai, Csaba J.; Dowling, Timothy E.

2017-10-01

Simulations of the atmospheres of Jovian planets can be used to check our current understanding of the physics of their atmospheres. Such studies have been performed in the past, but the development of cloud microphysics models allows us to gain new insight in how the clouds form and behave in areas of interest. This study conducts high resolution cloudy simulations of the 24 degree north high speed jet for a period of 200 days. The models were created using the Explicit Planetary Isentropic_Coordinate (EPIC) general circulation model (Dowling et al 1998, 2006) that includes full hydrological cycle for multiple condensible species (Palotai and dowling 2008, Palotai et al 2016). This builds off of work presented by our group last year at DPS. The simulations were run under various conditions again in order to test what parameters led to stable simulations. These results help describe which physical parameters can lead to stable high speed jets and how water and ammonia behave within these features. Reference: [1] T. Dowling, A. Fischer, P. Gierasch, J. Harrington, R. Lebeau, and C. Santori. The explicit planetary isentropic-coordinate (epic) atmospheric model. Icarus, 1998. [2] T. E. Dowling, M. E. Bradley, E. Colon, J. Kramer, R. P. LeBeau, G. C. H. Lee, T. I. Mattox, R. Morales-Juberias, C. J. Palotai, V. k. Parimi, and A. P. Showman. The epic atmospheric model with an isentropic/terrain-following hybrid vertical coordinate. Icarus, 182:259-273, may 2006.[3] C. Palotai and T. E. Dowling. Addition of water and ammonia cloud microphysics to the epic model. Icarus, 2008.[4] C. J. Palotai, R. P. Le Beau, R. Shankar, A. Flom, J. Lashley, and T. McCabe. A cloud microphysics model for the gas giant planets. In AAS/Division for Planetary Sciences Meeting Abstracts, 2016.

Wavelength-Dependent Extinction and Grain Sizes in "Dippers"

NASA Astrophysics Data System (ADS)

Sitko, Michael; Russell, Ray W.; Long, Zachary; Bayyari, Ammar; Assani, Korash; Grady, Carol; Lisse, Carey Michael; Marengo, Massimo; Wisniewski, John

2018-01-01

We have examined inter-night variability of K2-discovered "Dippers" that are not close to being viewed edge-on (as determined from previously-reported ALMA images) using the SpeX spectrograph on NASA's Infrared Telescope facility (IRTF). The three objects observed were EPIC 203850058, EPIC 205151387, and EPIC 204638512 ( = 2MASS J16042165-2130284). Using the ratio of the fluxes from 0.7-2.4 microns between two successive nights, we find that in at least two cases, the extinction increased toward shorter wavelengths. In the case of EPIC 204638512, we find that the properties of the dust differ from that seen in the diffuse interstellar medium and denser molecular clouds. However, the grain properties needed to explain the extinction does resemble those used to model the disks of many young stellar objects. The best fit to the data on EPIC 204638512 includes grains at least 500 microns in size, but lacks grains smaller than 0.25 microns. Since EPIC 204638512 is seen nearly face-on, it is possible the grains are entrained in an accretion flow that preferentially destroys the smallest grains. However, we have no indication of significant gas accretion onto the star in the form of emission lines observed in young low-mass stars. But the He I line at 1.083 microns was seen to change from night to night, and showed a P Cygni profile on one night, suggesting the gas might be outflowing from regions near the star.

Addition of a Hydrological Cycle to the EPIC Jupiter Model

NASA Astrophysics Data System (ADS)

Dowling, T. E.; Palotai, C. J.

2002-09-01

We present a progress report on the development of the EPIC atmospheric model to include clouds, moist convection, and precipitation. Two major goals are: i) to study the influence that convective water clouds have on Jupiter's jets and vortices, such as those to the northwest of the Great Red Spot, and ii) to predict ammonia-cloud evolution for direct comparison to visual images (instead of relying on surrogates for clouds like potential vorticity). Data structures in the model are now set up to handle the vapor, liquid, and solid phases of the most common chemical species in planetary atmospheres. We have adapted the Prather conservation of second-order moments advection scheme to the model, which yields high accuracy for dealing with cloud edges. In collaboration with computer scientists H. Dietz and T. Mattox at the U. Kentucky, we have built a dedicated 40-node parallel computer that achieves 34 Gflops (double precision) at 74 cents per Mflop, and have updated the EPIC-model code to use cache-aware memory layouts and other modern optimizations. The latest test-case results of cloud evolution in the model will be presented. This research is funded by NASA's Planetary Atmospheres and EPSCoR programs.

Porting of EPICS to Real Time UNIX, and Usage Ported EPICS for FEL Automation

NASA Astrophysics Data System (ADS)

Salikova, Tatiana

This article describes concepts and mechanisms used in porting of EPICS (Experimental Physical and Industrial Control System) codes to platform of operating system UNIX. Without destruction of EPICS architecture, new features of EPICS provides the support for real time operating system LynxOS/x86 and equipment produced by INP (Budker Institute of Nuclear Physics). Application of ported EPICS reduces the cost of software and hardware is used for automation of FEL (Free Electron Laser) complex.

Diverse effects of crop distribution and climate change on crop production in the agro-pastoral transitional zone of China

NASA Astrophysics Data System (ADS)

Qiao, Jianmin; Yu, Deyong; Wang, Qianfeng; Liu, Yupeng

2018-06-01

Both crop distribution and climate change are important drivers for crop production and can affect food security, which is an important requirement for sustainable development. However, their effects on crop production are confounded and warrant detailed investigation. As a key area for food production that is sensitive to climate change, the agro-pastoral transitional zone (APTZ) plays a significant role in regional food security. To investigate the respective effects of crop distribution and climate change on crop production, the well-established GIS-based Environmental Policy Integrated Climate (EPIC) model was adopted with different scenario designs in this study. From 1980 to 2010, the crop distribution for wheat, maize, and rice witnessed a dramatic change due to agricultural policy adjustments and ecological engineering-related construction in the APTZ. At the same time, notable climate change was observed. The simulation results indicated that the climate change had a positive impact on the crop production of wheat, maize, and rice, while the crop distribution change led to an increase in the production of maize and rice, but a decrease in the wheat production. Comparatively, crop distribution change had a larger impact on wheat (-1.71 × 106 t) and maize (8.53 × 106 t) production, whereas climate change exerted a greater effect on rice production (0.58 × 106 t), during the period from 1980 to 2010 in the APTZ. This study is helpful to understand the mechanism of the effects of crop distribution and climate change on crop production, and aid policy makers in reducing the threat of future food insecurity.

Diverse effects of crop distribution and climate change on crop production in the agro-pastoral transitional zone of China

NASA Astrophysics Data System (ADS)

Qiao, Jianmin; Yu, Deyong; Wang, Qianfeng; Liu, Yupeng

2017-07-01

Both crop distribution and climate change are important drivers for crop production and can affect food security, which is an important requirement for sustainable development. However, their effects on crop production are confounded and warrant detailed investigation. As a key area for food production that is sensitive to climate change, the agro-pastoral transitional zone (APTZ) plays a significant role in regional food security. To investigate the respective effects of crop distribution and climate change on crop production, the well-established GIS-based Environmental Policy Integrated Climate (EPIC) model was adopted with different scenario designs in this study. From 1980 to 2010, the crop distribution for wheat, maize, and rice witnessed a dramatic change due to agricultural policy adjustments and ecological engineering-related construction in the APTZ. At the same time, notable climate change was observed. The simulation results indicated that the climate change had a positive impact on the crop production of wheat, maize, and rice, while the crop distribution change led to an increase in the production of maize and rice, but a decrease in the wheat production. Comparatively, crop distribution change had a larger impact on wheat (-1.71 × 106 t) and maize (8.53 × 106 t) production, whereas climate change exerted a greater effect on rice production (0.58 × 106 t), during the period from 1980 to 2010 in the APTZ. This study is helpful to understand the mechanism of the effects of crop distribution and climate change on crop production, and aid policy makers in reducing the threat of future food insecurity.

Impacts and Uncertainties of +2°C of Climate Change and Soil Degradation on European Crop Calorie Supply

NASA Astrophysics Data System (ADS)

Balkovič, Juraj; Skalský, Rastislav; Folberth, Christian; Khabarov, Nikolay; Schmid, Erwin; Madaras, Mikuláš; Obersteiner, Michael; van der Velde, Marijn

2018-03-01

Even if global warming is kept below +2°C, European agriculture will be significantly impacted. Soil degradation may amplify these impacts substantially and thus hamper crop production further. We quantify biophysical consequences and bracket uncertainty of +2°C warming on calories supply from 10 major crops and vulnerability to soil degradation in Europe using crop modeling. The Environmental Policy Integrated Climate (EPIC) model together with regional climate projections from the European branch of the Coordinated Regional Downscaling Experiment (EURO-CORDEX) was used for this purpose. A robustly positive calorie yield change was estimated for the EU Member States except for some regions in Southern and South-Eastern Europe. The mean impacts range from +30 Gcal ha-1 in the north, through +25 and +20 Gcal ha-1 in Western and Eastern Europe, respectively, to +10 Gcal ha-1 in the south if soil degradation and heat impacts are not accounted for. Elevated CO2 and increased temperature are the dominant drivers of the simulated yield changes in high-input agricultural systems. The growth stimulus due to elevated CO2 may offset potentially negative yield impacts of temperature increase by +2°C in most of Europe. Soil degradation causes a calorie vulnerability ranging from 0 to 50 Gcal ha-1 due to insufficient compensation for nutrient depletion and this might undermine climate benefits in many regions, if not prevented by adaptation measures, especially in Eastern and North-Eastern Europe. Uncertainties due to future potentials for crop intensification are about 2-50 times higher than climate change impacts.

An Orthotropic Model for Composite Materials in EPIC

DTIC Science & Technology

2014-06-06

directions, and fails the material by eliminating the deviatoric stresses when any of the plastic strain components reaches its user-supplied critical...the directions of the fibers, especially in comparison to the non-linear stress -strain curves obtained from off-axis tensile tests. A somewhat...increment in Cauchy stress ; and is the tensor of elastic moduli. In EPIC, this equation is implemented via central differences because the velocity

Agricultural climate impacts assessment for economic modeling and decision support

NASA Astrophysics Data System (ADS)

Thomson, A. M.; Izaurralde, R. C.; Beach, R.; Zhang, X.; Zhao, K.; Monier, E.

2013-12-01

A range of approaches can be used in the application of climate change projections to agricultural impacts assessment. Climate projections can be used directly to drive crop models, which in turn can be used to provide inputs for agricultural economic or integrated assessment models. These model applications, and the transfer of information between models, must be guided by the state of the science. But the methodology must also account for the specific needs of stakeholders and the intended use of model results beyond pure scientific inquiry, including meeting the requirements of agencies responsible for designing and assessing policies, programs, and regulations. Here we present methodology and results of two climate impacts studies that applied climate model projections from CMIP3 and from the EPA Climate Impacts and Risk Analysis (CIRA) project in a crop model (EPIC - Environmental Policy Indicator Climate) in order to generate estimates of changes in crop productivity for use in an agricultural economic model for the United States (FASOM - Forest and Agricultural Sector Optimization Model). The FASOM model is a forward-looking dynamic model of the US forest and agricultural sector used to assess market responses to changing productivity of alternative land uses. The first study, focused on climate change impacts on the UDSA crop insurance program, was designed to use available daily climate projections from the CMIP3 archive. The decision to focus on daily data for this application limited the climate model and time period selection significantly; however for the intended purpose of assessing impacts on crop insurance payments, consideration of extreme event frequency was critical for assessing periodic crop failures. In a second, coordinated impacts study designed to assess the relative difference in climate impacts under a no-mitigation policy and different future climate mitigation scenarios, the stakeholder specifically requested an assessment of a mitigation level of 3.7 W/m2, as well as consideration of different levels of climate sensitivity (2, 3, 4.5 and 6oC) and different initial conditions for addressing uncertainty. Since the CMIP 3 and CMIP5 protocols did not include this mitigation level or consider alternative levels of climate sensitivity, additional climate projections were required. These two cases will be discussed to illustrate some of the trade-offs made in development of methodologies for climate impact assessments that are intended for a specific user or audience, and oriented towards addressing a specific topic of interest and providing useable results. This involvement of stakeholders from the design phase of climate impacts methodology serves to both define the appropriate method for the question at hand and also to engage and inform the stakeholders of the myriad options and uncertainties associated with different methodology choices. This type of engagement should benefit decision making in the long run through greater stakeholder understanding of the science of future climate model projections, scenarios, the climate impacts sector models and the types of outputs that can be generated by each along with the respective uncertainties at each step of the climate impacts assessment process.

Soil Carbon Change and Net Energy Associated with Biofuel Production on Marginal Lands: A Regional Modeling Perspective

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bandaru, Varaprasad; Izaurralde, Roberto C.; Manowitz, David H.

2013-12-01

The use of marginal lands (MLs) for biofuel production has been contemplated as a promising solution for meeting biofuel demands. However, there have been concerns with spatial location of MLs, their inherent biofuel potential, and possible environmental consequences with the cultivation of energy crops. Here, we developed a new quantitative approach that integrates high-resolution land cover and land productivity maps and uses conditional probability density functions for analyzing land use patterns as a function of land productivity to classify the agricultural lands. We subsequently applied this method to determine available productive croplands (P-CLs) and non-crop marginal lands (NC-MLs) in amore » nine-county Southern Michigan. Furthermore, Spatially Explicit Integrated Modeling Framework (SEIMF) using EPIC (Environmental Policy Integrated Climate) was used to understand the net energy (NE) and soil organic carbon (SOC) implications of cultivating different annual and perennial production systems.« less

Modeling Microbial Processes in EPIC to Estimate Greenhouse Gas Emissions from soils

NASA Astrophysics Data System (ADS)

Schwab, D. E.; Izaurralde, R. C.; McGill, W. B.; Williams, J. R.; Schmid, E.

2009-12-01

Emissions of trace gases (CO2, N2O and CH4) to the atmosphere from managed terrestrial ecosystems have been contributing significantly to the warming of Earth. Trace gas production is dominated by biospheric processes. An improved knowledge of the soil-plant-atmosphere interface is of key importance for understanding trace gas dynamics. In soils, microbial metabolism plays a key role in the release or uptake of trace gases. Here we present work on the biophysical and biogeochemical model EPIC (Environmental Policy/Integrated Climate) to extend its capabilities to simulate CO2 and N2O fluxes in managed and unmanaged ecosystems. Emphasis will be given to recently developed, microbially-based, denitrification and nitrification modules. The soil-atmosphere exchange of trace gases can be measured by using various equipments, but often these measurements exhibit extreme space-time variability. We use hourly time steps to account for the variability induced by small changes in environmental conditions. Soils are often studied as macroscopic systems, although their functions are predominantly controlled at a microscopic level; i.e. the level of the microorganisms. We include these processes to the extent that these are known and can be quantitatively described. We represent soil dynamics mathematically with routines for gas diffusion, Michael Menten processes, electron budgeting and other processes such as uptake and transformations. We hypothesize that maximization of energy capture form scarce substrates using energetic favorable reactions drives evolution and that competitive advantage can result by depriving a competitor from a substrate. This Microbe Model changes concepts of production of N-containing trace gases; it unifies understanding of N oxidation and reduction, predicts production and evolution of trace gases and is consistent with observations of anaerobic ammonium oxidation.

Effect of crop residue harvest on long-term crop yield, soil erosion, and carbon balance: tradeoffs for a sustainable bioenergy feedstock

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gregg, Jay S.; Izaurralde, Roberto C.

2010-08-26

Agricultural residues are a potential feedstock for bioenergy production, if residue harvest can be done sustainably. The relationship between crop residue harvest, soil erosion, crop yield and carbon balance was modeled with the Erosion Productivity Impact Calculator/ Environment Policy Integrated Climate (EPIC) using a factorial design. Four crop rotations (winter wheat [Triticum aestivum (L.)] – sunflower [Helianthus annuus]; spring wheat [Triticum aestivum (L.)] – canola [Brassica napus]; corn [Zea mays L.] – soybean [Glycine max (L.) Merr.]; and cotton [Gossypium hirsutum] – peanut [Arachis hypogaea]) were simulated at four US locations each, under different topographies (0-10% slope), and management practicesmore » [crop residue removal rates (0-75%), conservation practices (no till, contour cropping, strip cropping, terracing)].« less

Linearized radiative transfer models for retrieval of cloud parameters from EPIC/DSCOVR measurements

NASA Astrophysics Data System (ADS)

Molina García, Víctor; Sasi, Sruthy; Efremenko, Dmitry S.; Doicu, Adrian; Loyola, Diego

2018-07-01

In this paper, we describe several linearized radiative transfer models which can be used for the retrieval of cloud parameters from EPIC (Earth Polychromatic Imaging Camera) measurements. The approaches under examination are (1) the linearized forward approach, represented in this paper by the linearized discrete ordinate and matrix operator methods with matrix exponential, and (2) the forward-adjoint approach based on the discrete ordinate method with matrix exponential. To enhance the performance of the radiative transfer computations, the correlated k-distribution method and the Principal Component Analysis (PCA) technique are used. We provide a compact description of the proposed methods, as well as a numerical analysis of their accuracy and efficiency when simulating EPIC measurements in the oxygen A-band channel at 764 nm. We found that the computation time of the forward-adjoint approach using the correlated k-distribution method in conjunction with PCA is approximately 13 s for simultaneously computing the derivatives with respect to cloud optical thickness and cloud top height.

The Ergonomic Program Implementation Continuum (EPIC): integration of health and safety--a process evaluation in the healthcare sector.

PubMed

Baumann, Andrea; Holness, D Linn; Norman, Patrica; Idriss-Wheeler, Dina; Boucher, Patricia

2012-07-01

This article presents a health and safety intervention model and the use of process evaluation to assess a participatory ergonomic intervention. The effectiveness of the Ergonomic Program Implementation Continuum (EPIC) was assessed at six healthcare pilot sites in Ontario, Canada. The model provided a framework to demonstrate evaluation findings. Participants reported that EPIC was thorough and identified improvements related to its use. Participants believed the program contributed to advancing an organizational culture of safety (COS). Main barriers to program uptake included resistance to change and need for adequate funding and resources. The dedication of organizational leaders and consultant coaches was identified as essential to the program's success. In terms of impact on industry, findings contribute to the evidence-based knowledge of health and safety interventions and support use of the framework for creating a robust infrastructure to advance organizational COS and link staff safety and wellness with patient safety in healthcare. Copyright © 2012 National Safety Council and Elsevier Ltd. All rights reserved.

EPICS-based control and data acquisition for the APS slope profiler (Conference Presentation)

NASA Astrophysics Data System (ADS)

Sullivan, Joseph; Assoufid, Lahsen; Qian, Jun; Jemian, Peter R.; Mooney, Tim; Rivers, Mark L.; Goetze, Kurt; Sluiter, Ronald L.; Lang, Keenan

2016-09-01

The motion control, data acquisition and analysis system for APS Slope Measuring Profiler was implemented using the Experimental Physics and Industrial Control System (EPICS). EPICS was designed as a framework with software tools and applications that provide a software infrastructure used in building distributed control systems to operate devices such as particle accelerators, large experiments and major telescopes. EPICS was chosen to implement the APS Slope Measuring Profiler because it is also applicable to single purpose systems. The control and data handling capability available in the EPICS framework provides the basic functionality needed for high precision X-ray mirror measurement. Those built in capabilities include hardware integration of high-performance motion control systems (3-axis gantry and tip-tilt stages), mirror measurement devices (autocollimator, laser spot camera) and temperature sensors. Scanning the mirror and taking measurements was accomplished with an EPICS feature (the sscan record) which synchronizes motor positioning with measurement triggers and data storage. Various mirror scanning modes were automatically configured using EPICS built-in scripting. EPICS tools also provide low-level image processing (areaDetector). Operation screens were created using EPICS-aware GUI screen development tools.

The IRMIS object model and services API.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Saunders, C.; Dohan, D. A.; Arnold, N. D.

2005-01-01

The relational model developed for the Integrated Relational Model of Installed Systems (IRMIS) toolkit has been successfully used to capture the Advanced Photon Source (APS) control system software (EPICS process variables and their definitions). The relational tables are populated by a crawler script that parses each Input/Output Controller (IOC) start-up file when an IOC reboot is detected. User interaction is provided by a Java Swing application that acts as a desktop for viewing the process variable information. Mapping between the display objects and the relational tables was carried out with the Hibernate Object Relational Modeling (ORM) framework. Work is wellmore » underway at the APS to extend the relational modeling to include control system hardware. For this work, due in part to the complex user interaction required, the primary application development environment has shifted from the relational database view to the object oriented (Java) perspective. With this approach, the business logic is executed in Java rather than in SQL stored procedures. This paper describes the object model used to represent control system software, hardware, and interconnects in IRMIS. We also describe the services API used to encapsulate the required behaviors for creating and maintaining the complex data. In addition to the core schema and object model, many important concepts in IRMIS are captured by the services API. IRMIS is an ambitious collaborative effort for defining and developing a relational database and associated applications to comprehensively document the large and complex EPICS-based control systems of today's accelerators. The documentation effort includes process variables, control system hardware, and interconnections. The approach could also be used to document all components of the accelerator, including mechanical, vacuum, power supplies, etc. One key aspect of IRMIS is that it is a documentation framework, not a design and development tool. We do not generate EPICS control system configurations from IRMIS, and hence do not impose any additional requirements on EPICS developers.« less

75 FR 65985 - Safety Zone: Epic Roasthouse Private Party Firework Display, San Francisco, CA

Federal Register 2010, 2011, 2012, 2013, 2014

2010-10-27

... the navigable waters of San Francisco Bay 1,000 yards off Epic Roasthouse Restaurant, San Francisco... waters of San Francisco Bay, 1,000 yards off Epic Roasthouse Restaurant, San Francisco, CA. The fireworks... Epic Roasthouse Restaurant, San Francisco, CA. The fireworks launch site will be located in position 37...

Vulnerability of Agriculture to Climate Change as Revealed by Relationships between Simulated Crop Yield and Climate Change Indices

NASA Astrophysics Data System (ADS)

King, A. W.; Absar, S. M.; Nair, S.; Preston, B. L.

2012-12-01

The vulnerability of agriculture is among the leading concerns surrounding climate change. Agricultural production is influenced by drought and other extremes in weather and climate. In regions of subsistence farming, worst case reductions in yield lead to malnutrition and famine. Reduced surplus contributes to poverty in agrarian economies. In more economically diverse and industrialized regions, variations in agricultural yield can influence the regional economy through market mechanisms. The latter grows in importance as agriculture increasingly services the energy market in addition to markets for food and fiber. Agriculture is historically a highly adaptive enterprise and will respond to future changes in climate with a variety of adaptive mechanisms. Nonetheless, the risk, if not expectation, of increases in climate extremes and hazards exceeding historical experience motivates scientifically based anticipatory assessment of the vulnerability of agriculture to climate change. We investigate the sensitivity component of that vulnerability using EPIC, a well established field-scale model of cropping systems that includes the simulation of economic yield. The core of our analysis is the relationship between simulated yield and various indices of climate change, including the CCI/CLIVAR/JCOM ETCCDI indices, calculated from weather inputs to the model. We complement this core with analysis using the DSSAT cropping system model and exploration of relationships between historical yield statistics and climate indices calculated from weather records. Our analyses are for sites in the Southeast/Gulf Coast region of the United States. We do find "tight" monotonic relationships between annual yield and climate for some indices, especially those associated with available water. More commonly, however, we find an increase in the variability of yield as the index value becomes more extreme. Our findings contribute to understanding the sensitivity of crop yield as part of vulnerability analysis. They also contribute to considerations of adaptation, focusing attention on adapting to increased variability in yield rather than just reductions in yield. For example, in the face of increased variability or reduced reliability, hedging and risk spreading strategies may be more important than technological innovations such as drought-resistant crops or other optimization strategies. Our findings also have implications for the choice and application of climate extreme indices, demands on models used to project climate change and the development of next generation integrated assessment models (IAM) that incorporate the agricultural sector, and especially adaption within that sector, in energy and broader more general markets.

Enhanced Representation of Soil NO Emissions in the Community Multiscale Air Quality (CMAQ) Model Version 5.0.2

NASA Technical Reports Server (NTRS)

Rasool, Quazi Z.; Zhang, Rui; Lash, Benjamin; Cohan, Daniel S.; Cooter, Ellen J.; Bash, Jesse O.; Lamsal, Lok N.

2016-01-01

Modeling of soil nitric oxide (NO) emissions is highly uncertain and may misrepresent its spatial and temporal distribution. This study builds upon a recently introduced parameterization to improve the timing and spatial distribution of soil NO emission estimates in the Community Multiscale Air Quality (CMAQ) model. The parameterization considers soil parameters, meteorology, land use, and mineral nitrogen (N) availability to estimate NO emissions. We incorporate daily year-specific fertilizer data from the Environmental Policy Integrated Climate (EPIC) agricultural model to replace the annual generic data of the initial parameterization, and use a 12km resolution soil biome map over the continental USA. CMAQ modeling for July 2011 shows slight differences in model performance in simulating fine particulate matter and ozone from Interagency Monitoring of Protected Visual Environments (IMPROVE) and Clean Air Status and Trends Network (CASTNET) sites and NO2 columns from Ozone Monitoring Instrument (OMI) satellite retrievals. We also simulate how the change in soil NO emissions scheme affects the expected O3 response to projected emissions reductions.

Standardization of the 24-hour diet recall calibration method used in the european prospective investigation into cancer and nutrition (EPIC): general concepts and preliminary results.

PubMed

Slimani, N; Ferrari, P; Ocké, M; Welch, A; Boeing, H; Liere, M; Pala, V; Amiano, P; Lagiou, A; Mattisson, I; Stripp, C; Engeset, D; Charrondière, R; Buzzard, M; Staveren, W; Riboli, E

2000-12-01

Despite increasing interest in the concept of calibration in dietary surveys, there is still little experience in the use and standardization of a common reference dietary method, especially in international studies. In this paper, we present the general theoretical framework and the approaches developed to standardize the computer-assisted 24 h diet recall method (EPIC-SOFT) used to collect about 37 000 24-h dietary recall measurements (24-HDR) from the 10 countries participating in the European Prospective Investigation into Cancer and Nutrition (EPIC). In addition, an analysis of variance was performed to examine the level of standardization of EPIC-SOFT across the 90 interviewers involved in the study. The analysis of variance used a random effects model in which mean energy intake per interviewer was used as the dependent variable, while age, body mass index (BMI), energy requirement, week day, season, special diet, special day, physical activity and the EPIC-SOFT version were used as independent variables. The analysis was performed separately for men and women. The results show no statistical difference between interviewers in all countries for men and five out of eight countries for women, after adjustment for physical activity and the EPIC-SOFT program version used, and the exclusion of one interviewer in Germany (for men), and one in Denmark (for women). These results showed an interviewer effect in certain countries and a significant difference between gender, suggesting an underlying respondent's effect due to the higher under-reporting among women that was consistently observed in EPIC. However, the actual difference between interviewer and country mean energy intakes is about 10%. Furthermore, no statistical differences in mean energy intakes were observed across centres from the same country, except in Italy and Germany for men, and France and Spain for women, where the populations were recruited from areas scattered throughout the countries. Despite these encouraging results and the efforts to standardize the 24-HDR interview method, conscious or unconscious behaviour of respondents and/or interviewer bias cannot be prevented entirely. Further evaluation of the reliability of EPIC-SOFT measurements will be conducted through validation against independent biological markers (nitrogen, potassium).

'EPIC' View of Africa and Europe from a Million Miles Away

NASA Image and Video Library

2015-07-29

Africa is front and center in this image of Earth taken by a NASA camera on the Deep Space Climate Observatory (DSCOVR) satellite. The image, taken July 6 from a vantage point one million miles from Earth, was one of the first taken by NASA’s Earth Polychromatic Imaging Camera (EPIC). Central Europe is toward the top of the image with the Sahara Desert to the south, showing the Nile River flowing to the Mediterranean Sea through Egypt. The photographic-quality color image was generated by combining three separate images of the entire Earth taken a few minutes apart. The camera takes a series of 10 images using different narrowband filters -- from ultraviolet to near infrared -- to produce a variety of science products. The red, green and blue channel images are used in these Earth images. The DSCOVR mission is a partnership between NASA, the National Oceanic and Atmospheric Administration (NOAA) and the U.S. Air Force, with the primary objective to maintain the nation’s real-time solar wind monitoring capabilities, which are critical to the accuracy and lead time of space weather alerts and forecasts from NOAA. DSCOVR was launched in February to its planned orbit at the first Lagrange point or L1, about one million miles from Earth toward the sun. It’s from that unique vantage point that the EPIC instrument is acquiring images of the entire sunlit face of Earth. Data from EPIC will be used to measure ozone and aerosol levels in Earth’s atmosphere, cloud height, vegetation properties and a variety of other features. Image Credit: NASA NASA image use policy. NASA Goddard Space Flight Center enables NASA’s mission through four scientific endeavors: Earth Science, Heliophysics, Solar System Exploration, and Astrophysics. Goddard plays a leading role in NASA’s accomplishments by contributing compelling scientific knowledge to advance the Agency’s mission. Follow us on Twitter Like us on Facebook Find us on Instagram

Compounding Impacts of Human-Induced Water Stress and Climate Change on Water Availability

NASA Technical Reports Server (NTRS)

Mehran, Ali; AghaKouchak, Amir; Nakhjiri, Navid; Stewardson, Michael J.; Peel, Murray C.; Phillips, Thomas J.; Wada, Yoshihide; Ravalico, Jakin K.

2017-01-01

The terrestrial phase of the water cycle can be seriously impacted by water management and human water use behavior (e.g., reservoir operation, and irrigation withdrawals). Here we outline a method for assessing water availability in a changing climate, while explicitly considering anthropogenic water demand scenarios and water supply infrastructure designed to cope with climatic extremes. The framework brings a top-down and bottom-up approach to provide localized water assessment based on local water supply infrastructure and projected water demands. When our framework is applied to southeastern Australia we find that, for some combinations of climatic change and water demand, the region could experience water stress similar or worse than the epic Millennium Drought. We show considering only the influence of future climate on water supply, and neglecting future changes in water demand and water storage augmentation might lead to opposing perspectives on future water availability. While human water use can significantly exacerbate climate change impacts on water availability, if managed well, it allows societies to react and adapt to a changing climate. The methodology we present offers a unique avenue for linking climatic and hydrologic processes to water resource supply and demand management and other human interactions.

Compounding Impacts of Human-Induced Water Stress and Climate Change on Water Availability.

PubMed

Mehran, Ali; AghaKouchak, Amir; Nakhjiri, Navid; Stewardson, Michael J; Peel, Murray C; Phillips, Thomas J; Wada, Yoshihide; Ravalico, Jakin K

2017-07-24

The terrestrial phase of the water cycle can be seriously impacted by water management and human water use behavior (e.g., reservoir operation, and irrigation withdrawals). Here we outline a method for assessing water availability in a changing climate, while explicitly considering anthropogenic water demand scenarios and water supply infrastructure designed to cope with climatic extremes. The framework brings a top-down and bottom-up approach to provide localized water assessment based on local water supply infrastructure and projected water demands. When our framework is applied to southeastern Australia we find that, for some combinations of climatic change and water demand, the region could experience water stress similar or worse than the epic Millennium Drought. We show considering only the influence of future climate on water supply, and neglecting future changes in water demand and water storage augmentation might lead to opposing perspectives on future water availability. While human water use can significantly exacerbate climate change impacts on water availability, if managed well, it allows societies to react and adapt to a changing climate. The methodology we present offers a unique avenue for linking climatic and hydrologic processes to water resource supply and demand management and other human interactions.

Trend in Obesity Prevalence in European Adult Cohort Populations during Follow-up since 1996 and Their Predictions to 2015

PubMed Central

von Ruesten, Anne; Steffen, Annika; Floegel, Anna; van der A, Daphne L.; Masala, Giovanna; Tjønneland, Anne; Halkjaer, Jytte; Palli, Domenico; Wareham, Nicholas J.; Loos, Ruth J. F.; Sørensen, Thorkild I. A.; Boeing, Heiner

2011-01-01

Objective To investigate trends in obesity prevalence in recent years and to predict the obesity prevalence in 2015 in European populations. Methods Data of 97 942 participants from seven cohorts involved in the European Prospective Investigation into Cancer and Nutrition (EPIC) study participating in the Diogenes project (named as “Diogenes cohort” in the following) with weight measurements at baseline and follow-up were used to predict future obesity prevalence with logistic linear and non-linear (leveling off) regression models. In addition, linear and leveling off models were fitted to the EPIC-Potsdam dataset with five weight measures during the observation period to find out which of these two models might provide the more realistic prediction. Results During a mean follow-up period of 6 years, the obesity prevalence in the Diogenes cohort increased from 13% to 17%. The linear prediction model predicted an overall obesity prevalence of about 30% in 2015, whereas the leveling off model predicted a prevalence of about 20%. In the EPIC-Potsdam cohort, the shape of obesity trend favors a leveling off model among men (R2 = 0.98), and a linear model among women (R2 = 0.99). Conclusion Our data show an increase in obesity prevalence since the 1990ies, and predictions by 2015 suggests a sizeable further increase in European populations. However, the estimates from the leveling off model were considerably lower. PMID:22102897

Impacts of Irrigation and Climate Change on Water Security: Using Stakeholder Engagement to Inform a Process-based Crop Model

NASA Astrophysics Data System (ADS)

Leonard, A.; Flores, A. N.; Han, B.; Som Castellano, R.; Steimke, A.

2016-12-01

Irrigation is an essential component for agricultural production in arid and semi-arid regions, accounting for a majority of global freshwater withdrawals used for human consumption. Since climate change affects both the spatiotemporal demand and availability of water in irrigated areas, agricultural productivity and water efficiency depend critically on how producers adapt and respond to climate change. It is necessary, therefore, to understand the coevolution and feedbacks between humans and agricultural systems. Integration of social and hydrologic processes can be achieved by active engagement with local stakeholders and applying their expertise to models of coupled human-environment systems. Here, we use a process based crop simulation model (EPIC) informed by stakeholder engagement to determine how both farm management and climate change influence regional agricultural water use and production in the Lower Boise River Basin (LBRB) of southwest Idaho. Specifically, we investigate how a shift from flood to sprinkler fed irrigation would impact a watershed's overall agricultural water use under RCP 4.5 and RCP 8.5 climate scenarios. The LBRB comprises about 3500 km2, of which 20% is dedicated to irrigated crops and another 40% to grass/pasture grazing land. Via interviews of stakeholders in the LBRB, we have determined that approximately 70% of irrigated lands in the region are flood irrigated. We model four common crops produced in the LBRB (alfalfa, corn, winter wheat, and sugarbeets) to investigate both hydrologic and agricultural impacts of irrigation and climatic drivers. Factors influencing farmers' decision to switch from flood to sprinkler irrigation include potential economic benefits, external financial incentives, and providing a buffer against future water shortages. These two irrigation practices are associated with significantly different surface water and energy budgets, and large-scale shifts in practice could substantially impact regional hydrologic budgets. This study reports our methodology to integrate perspectives of irrigators into projections of future water use and crop growth in the LBRB. It also highlights the need for more robust social data collection methods in socio-hydrologic studies.

EPIC : expedited processing at international crossings : evaluation final report

DOT National Transportation Integrated Search

1998-09-01

This executive summary presents an overview of the Expedited Processing at International Crossings (EPIC) Field Operational Test (FOT). The EPIC focus was on the commercial vehicle transport component of international border crossings at the Nogales,...

Water-centric nexus for response to climate change on agriculture and forest sector: The case of the Korean Peninsula

NASA Astrophysics Data System (ADS)

Lim, C. H.; Choi, Y.; Jeon, S. W.; Lee, W. K.

2017-12-01

Given their complexity and the number of stakeholders involved, it is difficult to solve social issues or problems based on an analysis that focuses on a single dimension. In particular, research surrounding climate change is inherently multidisciplinary and there is a need for highly pluralistic nexuses that can be used as a framework for policy decisions. Here, we suggest to water-centric nexus on agriculture and forest sector to improve response to climate change. The nexus is composed agricultural water demand and forest water supply to enhancing water-related adaptation to climate change in the Korean Peninsula. Agricultural productivity and water use related variables was estimating by EPIC crop model, and InVEST model applied for estimation of forest water supply. Results under two climate change scenarios (RCP4.5 and 8.5) and time period (2050s and 2070s), the forest water supply for the all future climate scenarios will increase significantly. In case of agriculture, irrigated crops experienced only the benefits of climate change, but rainfed crops were negatively impacted. It was also found that crop irrigation demand in the future is expected to be around twice as high as baseline levels, thus making irrigation more difficult to successfully implement. These hydrological threats have the potential to greatly reduce food security. In the nexus perspectives, the drop in the productivity of rainfed crops and the increase in irrigation demand in the agriculture sector can be resolved through interconnections with the forest sector. Appropriate management of the water supply in future climatic conditions characterized by increasing precipitation can maintain and expand agricultural areas through irrigation. To achieve this, a time-series water supply versus demand analysis must be performed so that an accurate balance between supply and demand can be established. Water-centric interactions of the agriculture and forest are the basis of nexus-based adaptation and they can suggest effective climate change responses for the Korean peninsula. In particular, this approach will be effective in transforming sectors that experience trade-offs into ones that promote synergies.

The K2 Ecliptic Plane Input Catalog (EPIC) and Stellar Classifications of 138,600 Targets in Campaigns 1-8

NASA Astrophysics Data System (ADS)

Huber, Daniel; Bryson, Stephen T.; Haas, Michael R.; Barclay, Thomas; Barentsen, Geert; Howell, Steve B.; Sharma, Sanjib; Stello, Dennis; Thompson, Susan E.

2016-05-01

The K2 Mission uses the Kepler spacecraft to obtain high-precision photometry over ≈80 day campaigns in the ecliptic plane. The Ecliptic Plane Input Catalog (EPIC) provides coordinates, photometry, and kinematics based on a federation of all-sky catalogs to support target selection and target management for the K2 mission. We describe the construction of the EPIC, as well as modifications and shortcomings of the catalog. Kepler magnitudes (Kp) are shown to be accurate to ≈0.1 mag for the Kepler field, and the EPIC is typically complete to Kp ≈ 17 (Kp ≈ 19 for campaigns covered by Sloan Digital Sky Survey). We furthermore classify 138,600 targets in Campaigns 1-8 (≈88% of the full target sample) using colors, proper motions, spectroscopy, parallaxes, and galactic population synthesis models, with typical uncertainties for G-type stars of ≈3% in {T}{{eff}}, ≈0.3 dex in {log} g, ≈40% in radius, ≈10% in mass, and ≈40% in distance. Our results show that stars targeted by K2 are dominated by K-M dwarfs (≈41% of all selected targets), F-G dwarfs (≈36%), and K giants (≈21%), consistent with key K2 science programs to search for transiting exoplanets and galactic archeology studies using oscillating red giants. However, we find significant variation of the fraction of cool dwarfs with galactic latitude, indicating a target selection bias due to interstellar reddening and increased contamination by giant stars near the galactic plane. We discuss possible systematic errors in the derived stellar properties, and differences with published classifications for K2 exoplanet host stars. The EPIC is hosted at the Mikulski Archive for Space Telescopes (MAST): http://archive.stsci.edu/k2/epic/search.php.

Integrated impact assessment of climate change, land use, and adaptation policies on water quality in Austria

NASA Astrophysics Data System (ADS)

Trautvetter, Helen; Schoenhart, Martin; Parajaka, Juraj; Schmid, Erwin; Zessner, Matthias

2017-04-01

Climate change is one of the major challenges of our time and adds considerable stress to the human society and environment. A change in climate will not only shift general weather patterns, but might also increase the recurrence of extreme weather events such as drought and heavy rainfall. These changes in climatic conditions will affect the quality and quantity of water resources both directly as well as indirectly through autonomous adaptation by farmers (e.g. cultivar choices, fertilization intensity or soil management). This will influence the compliance with the good ecological and chemical status according to the EU Water Framework Directive. We present results from an integrated impact modelling framework (IIMF) to tackle those direct and indirect impacts and analyze policy options for planned adaptation in agricultural land use and sustainable management of land and water resources until 2040. The IIMF is the result of an interdisciplinary collaboration among economists, agronomists, and hydrologists. It consists of the bio-physical process model EPIC, the regional land use optimization model PASMA[grid], the quantitative precipitation/runoff TUWmodel and the surface water emission model MONERIS. Scenarios have been developed and parameterized in collaboration with stakeholders in order to facilitate multi-actor knowledge transfer. The set of climate change scenarios until 2040 includes three scenarios with equal temperature changes but varying precipitation patterns. They are combined with potential socio-economic and policy development. The latter include water protection measures on fertilization management, soil management, or crop rotation choices. We will presented the development of interfaces among the research, the definition of scenarios and major scenario results for Austria. We will focus on nutrient emissions to surface waters, which are the major link between the different models. The results, available at watershed level indicate the significant impact on future precipitation development on the risk of not achieving nutrient criteria of the good ecological water quality status of surface waters. Policy measures show relatively low impacts for nitrogen, while they may highly affect the phosphorus emissions and hence the compliance with environmental quality standards for phosphate phosphorus.

Modeling Jupiter's Great Red Spot with an Active Hydrological Cycle

NASA Astrophysics Data System (ADS)

Palotai, C. J.; Dowling, T. E.; Morales-Juberías, R.

2003-05-01

We are studying the interaction of Jupiter's hydrological cycle with the formation and maintenance of its long-lived vortices and jet streams using numerical simulations. We are particularly interested in establishing the importance of the large convective storm system to the northwest of Jupiter's Great Red Spot (GRS). We have adapted into the EPIC model the cloud microphysics scheme used at Colorado State University (Fowler et al. 1996, J. Cli. 9, 489), which contains prognostic equations for vapor, liquid cloud, ice cloud, rain and snow. We are focussing on the role of water, but the EPIC model can also handle multiple species (water, ammonia, etc.). Processes that are currently working in the microphysics model include large-scale condensation/deposition, cloud evaporation, melting/freezing, and Bergeron-Findeisen diffusional growth of ice from supercooled liquid. The form of precipitation on gas giants is a major unknown. We are currently using a simple scheme for precipitation, but are studying the effect that processes known to be important in terrestrial models have on our results, including formation and accretion of rain and snow, preciptation evaporation, detrainment and cloud-top entrainment. We will present comparisons of ``dry'' and ``wet'' runs of a channel Jupiter EPIC simulation covering -40S to the equator that includes various initial water-vapor profiles and a GRS model. The effects of latent heating on the energy budget and vertical transport will be discussed. This research is funded by NASA's Planetary Atmospheres and EPSCoR Programs.

Implementation of Epic Beaker Clinical Pathology at Stanford University Medical Center.

PubMed

Tan, Brent T; Fralick, Jennifer; Flores, William; Schrandt, Cary; Davis, Vicki; Bruynell, Tom; Wilson, Lisa; Christopher, John; Weber, Shirley; Shah, Neil

2017-03-01

To provide an account of implementation of the Epic Beaker 2014 clinical pathology module at Stanford University Medical Center and highlight strengths and weaknesses of the system. Based on a formal selection process, Stanford selected Epic Beaker to replace Sunquest as the clinical laboratory information system (LIS). The rationale included integration between the LIS and already installed Epic electronic medical record (EMR), reduction in the number of systems and interfaces, and positive patient identification (PPID). The build was significantly customized and included a first of its kind Epic-to-Epic interface. This was due to the clinical laboratory serving two hospitals (pediatric and adult) with independent instances of Epic. Test turnaround times showed improvement from historical baselines, mostly because of the implementation of PPID. PPID also resulted in significant reduction in mislabeled specimens. Epic 2014 Beaker clinical pathology is a viable LIS with adequate functionality for a large academic center. Strengths include PPID and integration with the EMR. Integration provides laboratory users with ready access to the patient's relevant clinical history to assist releasing of results and gives physician and nurse providers sophisticated add-on ordering and specimen collection workflows. Areas that could use further development include specimen aliquoting, quality control reporting, and maintenance tools. © American Society for Clinical Pathology, 2017. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com

EPIC'S NEW REMOTE SENSING DATA AND INFORMATION TOOLS AVAILABLE FOR EPA CUSTOMERS

EPA Science Inventory

EPIC's New Remote Sensing Data and Information Tools Available for EPA Customers Donald Garofalo Environmental Photographic Interpretation Center (EPIC) Landscape Ecology Branch Environmental Sciences Division National Exposure Research Laboratory

Several new too...

Determine Daytime Earth's Radiation Budget from DSCOVR

NASA Astrophysics Data System (ADS)

Su, W.; Thieman, M. M.; Duda, D. P.; Khlopenkov, K. V.; Liang, L.; Sun-Mack, S.; Minnis, P.; SUN, M.

2017-12-01

The Deep Space Climate Observatory (DSCOVR) platform provides a unique perspective for remote sensing of the Earth. With the National Institute of Standards and Technology Advanced Radiometer (NISTAR) and the Earth Polychromatic Imaging Camera (EPIC) onboard, it provides full-disk measurements of the broadband shortwave and total radiances reaching the L1 position. Because the satellite orbits around the L1 spot, it continuously observes a nearly full Earth, providing the potential to determine the daytime radiation budget of the globe at the top of the atmosphere. The NISTAR is a single-pixel instrument that measures the broadband radiance from the entire globe, while EPIC is a spectral imager with channels in the UV and visible ranges. The Level 1 NISTAR shortwave radiances are filtered radiances. To determine the daytime TOA shortwave and longwave radiative fluxes, the NISTAR measured shortwave radiances must be unfiltered first. We will describe the algorithm used to un-filter the shortwave radiances. These unfiltered NISTAR radiances are then converted to the full disk shortwave and daytime longwave fluxes, by accounting for the anisotropic characteristics of the Earth-reflected and emitted radiances. These anisotropy factors are determined by using the scene identifications determined from multiple low Earth orbit and geostationary satellites matched into the EPIC field of view. Time series of daytime radiation budget determined from NISTAR will be presented, and methodology of estimating the fluxes from the small unlit crescent of the Earth that comprises part of the field of view will also be described. The daytime shortwave and longwave fluxes from NISTAR will be compared with CERES dataset.

Two-year Clinical Outcomes Post Implantation of EpicTM Self-Expanding Nitinol Stents for the Aortoiliac Occlusive Disease in Patients with Peripheral Arterial Disease.

PubMed

Tsujimura, Takuya; Iida, Osamu; Fujita, Masashi; Masuda, Masaharu; Okamoto, Shin; Ishihara, Takayuki; Nanto, Kiyonori; Kanda, Takashi; Okuno, Shota; Matsuda, Yasuhiro; Fujihara, Masahiko; Yokoi, Yoshiaki; Mano, Toshiaki

2018-04-01

We investigated 2-year clinical outcomes after implantaton of Epic TM self-expanding nitinol stents for patients with peripheral artery disease (PAD) due to the aortoiliac occlusive disease (AIOD). This study was a multicenter and retrospective study. From February 2013 through October 2014, 292 lesions (chronic total occlusion, 21%; TASC Ⅱ C/D, 35%) in 217 consecutive patients (74±8 years; male, 81%; diabetes mellitus, 47%; dialysis, 21%; critical limb ischemia, 29%) who had undergone endovascular therapy (EVT) with Epic TM self-expanding nitinol stents for PAD with AIOD were analyzed. The primary endpoints were 2-year primary patency and target lesion revascularization (TLR)-free rate. The primary patency and freedom from TLR were determined by Kaplan-Meier analysis. Additionally, predictors for loss of patency were estimated by Cox proportional hazard model. The mean follow-up duration was 19.1±8.5 months. Primary patency was 87.3% at 2 years. Freedom from TLR rate was 94.1% at 2 years. Multivariate analysis revealed that the presence of diabetes mellitus was associated with a loss of patency. The Epic TM self-expanding nitinol stent was demonstrated to be safe and effectivene for AIOD when tested for two years in patients with PAD.

AERIAL PHOTO INTERPRETATION FOR SITE CHARACTERIZATION, ENVIRONMENTAL PHOTOGRAPHIC INTERPRETATION CENTER (EPIC)

EPA Science Inventory

The Environmental Photographic Interpretation Center (EPIC) is a field station of the Landscape Ecology Branch (LEB), Environmental Sciences Division - Las Vegas, Office of Research and Development EPIC provides remote sensing technical support to help the Agency achieve its mult...

Three Object-Oriented enhancement for EPICS

NASA Astrophysics Data System (ADS)

Osberg, E. A.; Dohan, D. A.; Richter, R.; Biggs, R.; Chillara, K.; Wade, D.; Bossom, J.

1994-12-01

In line with our group's intention of producing software using, where possible, Object-Oriented methodologies and techniques in the development of RF control systems, we have undertaken three projects to enhance the EPICS software environment. Two of the projects involve interfaces to EPICs Channel Access from Object-Oriented languages. The third is an enhancement to the EPICS State Notation Language to better support the Shlaer-Mellor Object-Oriented Analysis and Design Methodology. This paper discusses the motivation, approaches, results and future directions of these three projects.

Global Simulation of Bioenergy Crop Productivity: Analytical Framework and Case Study for Switchgrass

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kang, Shujiang; Kline, Keith L; Nair, S. Surendran

A global energy crop productivity model that provides geospatially explicit quantitative details on biomass potential and factors affecting sustainability would be useful, but does not exist now. This study describes a modeling platform capable of meeting many challenges associated with global-scale agro-ecosystem modeling. We designed an analytical framework for bioenergy crops consisting of six major components: (i) standardized natural resources datasets, (ii) global field-trial data and crop management practices, (iii) simulation units and management scenarios, (iv) model calibration and validation, (v) high-performance computing (HPC) simulation, and (vi) simulation output processing and analysis. The HPC-Environmental Policy Integrated Climate (HPC-EPIC) model simulatedmore » a perennial bioenergy crop, switchgrass (Panicum virgatum L.), estimating feedstock production potentials and effects across the globe. This modeling platform can assess soil C sequestration, net greenhouse gas (GHG) emissions, nonpoint source pollution (e.g., nutrient and pesticide loss), and energy exchange with the atmosphere. It can be expanded to include additional bioenergy crops (e.g., miscanthus, energy cane, and agave) and food crops under different management scenarios. The platform and switchgrass field-trial dataset are available to support global analysis of biomass feedstock production potential and corresponding metrics of sustainability.« less

Elpasolite Planetary Ice and Composition Spectrometer (EPICS): A Low-Resource Combined Gamma-Ray and Neutron Spectrometer for Planetary Science

NASA Astrophysics Data System (ADS)

Stonehill, L. C.; Coupland, D. D. S.; Dallmann, N. A.; Feldman, W. C.; Mesick, K.; Nowicki, S.; Storms, S.

2017-12-01

The Elpasolite Planetary Ice and Composition Spectrometer (EPICS) is an innovative, low-resource gamma-ray and neutron spectrometer for planetary science missions, enabled by new scintillator and photodetector technologies. Neutrons and gamma rays are produced by cosmic ray interactions with planetary bodies and their subsequent interactions with the near-surface materials produce distinctive energy spectra. Measuring these spectra reveals details of the planetary near-surface composition that are not accessible through any other phenomenology. EPICS will be the first planetary science instrument to fully integrate the neutron and gamma-ray spectrometers. This integration is enabled by the elpasolite family of scintillators that offer gamma-ray spectroscopy energy resolutions as good as 3% FWHM at 662 keV, thermal neutron sensitivity, and the ability to distinguish gamma-ray and neutron signals via pulse shape differences. This new detection technology will significantly reduce size, weight, and power (SWaP) while providing similar neutron performance and improved gamma energy resolution compared to previous scintillator instruments, and the ability to monitor the cosmic-ray source term. EPICS will detect scintillation light with silicon photomultipliers rather than traditional photomultiplier tubes, offering dramatic additional SWaP reduction. EPICS is under development with Los Alamos National Laboratory internal research and development funding. Here we report on the EPICS design, provide an update on the current status of the EPICS development, and discuss the expected sensitivity and performance of EPICS in several potential missions to airless bodies.

Effect of introduction of a new electronic anesthesia record (Epic) system on the safety and efficiency of patient care in a gastrointestinal endoscopy suite-comparison with historical cohort.

PubMed

Goudra, B; Singh, P M; Borle, A; Gouda, G

2016-01-01

Use of electronic medical record systems has increased in the recent years. Epic is one such system gaining popularity in the USA. Epic is a private company, which invented the electronic documentation system adopted in our hospital. In spite of many presumed advantages, its use is not critically analyzed. Some of the perceived advantages are increased efficiency and protection against litigation as a result of accurate documentation. In this study, retrospective data of 305 patients who underwent endoscopic retrograde cholangiopancreatography (wherein electronic charting was used - "Epic group") were compared with 288 patients who underwent the same procedure with documentation saved on a paper chart ("paper group"). Time of various events involved in the procedure such as anesthesia start, endoscope insertion, endoscope removal, and transfer to the postanesthesia care unit were routinely documented. From this data, the various time durations were calculated. Both "anesthesia start to scope insertion" times and "scope removal to transfer" times were significantly less in the Epic group compared to the paper group. Use of Epic system led to a saving of 4 min of procedure time per patient. However, the mean oxygen saturation was significantly less in the Epic group. In spite of perceived advantages of Epic documentation system, significant hurdles remain with its use. Although the system allows seamless flow of patients, failure to remove all artifacts can lead to errors and become a source of potential litigation hazard.

Compounding Impacts of Human-Induced Water Stress and Climate Change on Water Availability

DOE PAGES

Mehran, Ali; AghaKouchak, Amir; Nakhjiri, Navid; ...

2017-07-24

The terrestrial phase of the water cycle can be seriously impacted by water management and human water use behavior (e.g., reservoir operation, and irrigation withdrawals). Here we outline a method for assessing water availability in a changing climate, while explicitly considering anthropogenic water demand scenarios and water supply infrastructure designed to cope with climatic extremes. The framework brings a top-down and bottom-up approach to provide localized water assessment based on local water supply infrastructure and projected water demands. When our framework is applied to southeastern Australia we find that, for some combinations of climatic change and water demand, the regionmore » could experience water stress similar or worse than the epic Millennium Drought. We show considering only the influence of future climate on water supply, and neglecting future changes in water demand and water storage augmentation might lead to opposing perspectives on future water availability. While human water use can significantly exacerbate climate change impacts on water availability, if managed well, it allows societies to react and adapt to a changing climate. The methodology we present offers a unique avenue for linking climatic and hydrologic processes to water resource supply and demand management and other human interactions.« less

Compounding Impacts of Human-Induced Water Stress and Climate Change on Water Availability

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mehran, Ali; AghaKouchak, Amir; Nakhjiri, Navid

The terrestrial phase of the water cycle can be seriously impacted by water management and human water use behavior (e.g., reservoir operation, and irrigation withdrawals). Here we outline a method for assessing water availability in a changing climate, while explicitly considering anthropogenic water demand scenarios and water supply infrastructure designed to cope with climatic extremes. The framework brings a top-down and bottom-up approach to provide localized water assessment based on local water supply infrastructure and projected water demands. When our framework is applied to southeastern Australia we find that, for some combinations of climatic change and water demand, the regionmore » could experience water stress similar or worse than the epic Millennium Drought. We show considering only the influence of future climate on water supply, and neglecting future changes in water demand and water storage augmentation might lead to opposing perspectives on future water availability. While human water use can significantly exacerbate climate change impacts on water availability, if managed well, it allows societies to react and adapt to a changing climate. The methodology we present offers a unique avenue for linking climatic and hydrologic processes to water resource supply and demand management and other human interactions.« less

MODBUS APPLICATION AT JEFFERSON LAB

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yan, Jianxun; Seaton, Chad; Philip, Sarin

Modbus is a client/server communication model. In our applications, the embedded Ethernet device XPort is designed as the server and a SoftIOC running EPICS Modbus is the client. The SoftIOC builds a Modbus request from parameter contained in a demand that is sent by the EPICS application to the Modbus Client interface. On reception of the Modbus request, the Modbus server activates a local action to read, write, or achieve some other action. So, the main Modbus server functions are to wait for a Modbus request on 502 TCP port, treat this request, and then build a Modbus response.

Linking a modified EPIC-based growth model (UPGM) with a component-based watershed model (AGES-W)

USDA-ARS?s Scientific Manuscript database

Agricultural models and decision support systems (DSS) for assessing water use and management are increasingly being applied to diverse geographic regions at different scales. This requires models that can simulate different crops, however, very few plant growth models are available that “easily” ...

78 FR 69363 - Lake Tahoe Basin Management Unit, California, Heavenly Mountain Resort Epic Discovery Project

Federal Register 2010, 2011, 2012, 2013, 2014

2013-11-19

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The EPIC Leadership Development Program Evaluation Report. Research Brief

ERIC Educational Resources Information Center

New Leaders for New Schools (NJ1), 2011

2011-01-01

New Leaders for New Schools created the Effective Practice Incentive Community (EPIC) initiative in 2006 to learn from educators driving achievement gains in high-need urban schools. EPIC identifies school leaders and teachers whose students are making significant achievement gains and financially rewards these educators in exchange for sharing…

EPICS Channel Access Server for LabVIEW

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhukov, Alexander P.

It can be challenging to interface National Instruments LabVIEW (http://www.ni.com/labview/) with EPICS (http://www.aps.anl.gov/epics/). Such interface is required when an instrument control program was developed in LabVIEW but it also has to be part of global control system. This is frequently useful in big accelerator facilities. The Channel Access Server is written in LabVIEW, so it works on any hardware/software platform where LabVIEW is available. It provides full server functionality, so any EPICS client can communicate with it.

VizieR Online Data Catalog: K2 Ecliptic Plane Input Catalog (EPIC) (Huber+, 2017)

NASA Astrophysics Data System (ADS)

Huber, D.; Bryson, S. T.; et al.

2017-09-01

The construction of the EPIC, as well as modifications and shortcomings of the catalog are described in Huber+, 2016, J/ApJS/224/2 Changes for Campaigns 0-3, 7-10 and 16 are described in: http://archive.stsci.edu/k2/manuals/epic.pdf Kepler magnitudes (Kp) are shown to be accurate to ~0.1mag for the Kepler field, and the EPIC is typically complete to Kp~17 (Kp~19 for campaigns covered by Sloan Digital Sky Survey). (1 data file).

Destroying Aliases from the Ground and Space: Super-Nyquist ZZ Cetis in K2 Long Cadence Data

NASA Astrophysics Data System (ADS)

Bell, Keaton J.; Hermes, J. J.; Vanderbosch, Z.; Montgomery, M. H.; Winget, D. E.; Dennihy, E.; Fuchs, J. T.; Tremblay, P.-E.

2017-12-01

With typical periods of the order of 10 minutes, the pulsation signatures of ZZ Ceti variables (pulsating hydrogen-atmosphere white dwarf stars) are severely undersampled by long-cadence (29.42 minutes per exposure) K2 observations. Nyquist aliasing renders the intrinsic frequencies ambiguous, stifling precision asteroseismology. We report the discovery of two new ZZ Cetis in long-cadence K2 data: EPIC 210377280 and EPIC 220274129. Guided by three to four nights of follow-up, high-speed (≤slant 30 s) photometry from the McDonald Observatory, we recover accurate pulsation frequencies for K2 signals that reflected four to five times off the Nyquist with the full precision of over 70 days of monitoring (∼0.01 μHz). In turn, the K2 observations enable us to select the correct peaks from the alias structure of the ground-based signals caused by gaps in the observations. We identify at least seven independent pulsation modes in the light curves of each of these stars. For EPIC 220274129, we detect three complete sets of rotationally split {\\ell }=1 (dipole mode) triplets, which we use to asteroseismically infer the stellar rotation period of 12.7 ± 1.3 hr. We also detect two sub-Nyquist K2 signals that are likely combination (difference) frequencies. We attribute our inability to match some of the K2 signals to the ground-based data to changes in pulsation amplitudes between epochs of observation. Model fits to SOAR spectroscopy place both EPIC 210377280 and EPIC 220274129 near the middle of the ZZ Ceti instability strip, with {T}{eff} =11590+/- 200 K and 11810 ± 210 K, and masses 0.57 ± 0.03 M ⊙ and 0.62 ± 0.03 M ⊙, respectively.

Kepler's first view of O-star variability: K2 data of five O stars in Campaign 0 as a proof of concept for O-star asteroseismology

NASA Astrophysics Data System (ADS)

Buysschaert, B.; Aerts, C.; Bloemen, S.; Debosscher, J.; Neiner, C.; Briquet, M.; Vos, J.; Pápics, P. I.; Manick, R.; Schmid, V. S.; Van Winckel, H.; Tkachenko, A.

2015-10-01

We present high-precision photometric light curves of five O-type stars observed with the refurbished Kepler satellite during its Campaign 0. For one of the stars, we also assembled high-resolution ground-based spectroscopy with the HERMES spectrograph attached to the 1.2 m Mercator telescope. The stars EPIC 202060097 (O9.5V) and EPIC 202060098 (O7V) exhibit monoperiodic variability due to rotational modulation with an amplitude of 5.6 and 9.3 mmag and a rotation period of 2.63 and 5.03 d, respectively. EPIC 202060091 (O9V) and EPIC 202060093 (O9V:pe) reveal variability at low frequency but the cause is unclear. EPIC 202060092 (O9V:p) is discovered to be a spectroscopic binary with at least one multiperiodic β Cep-type pulsator whose detected mode frequencies occur in the range [0.11, 6.99] d-1 and have amplitudes between 0.8 and 2.0 mmag. Its pulsation spectrum is shown to be fully compatible with the ones predicted by core-hydrogen burning O-star models. Despite the short duration of some 33 d and the limited data quality with a precision near 100 μmag of these first K2 data, the diversity of possible causes for O-star variability already revealed from campaigns of similar duration by the MOST and CoRoT satellites is confirmed with Kepler. We provide an overview of O-star space photometry and give arguments why future K2 monitoring during Campaigns 11 and 13 at short cadence, accompanied by time-resolved high-precision high-resolution spectroscopy, opens up the possibility of in-depth O-star seismology.

Water use impacts of future transport fuels: role of California's climate policy & National biofuel policies (Invited)

NASA Astrophysics Data System (ADS)

Teter, J.; Yeh, S.; Mishra, G. S.; Tiedeman, K.; Yang, C.

2013-12-01

In the coming decades, growing demand for energy and water and the need to address climate change will create huge challenges for energy policy and natural resource management. Synergistic strategies must be developed to conserve and use both resources more efficiently. California (CA) is a prime example of a region where policymakers have began to incorporate water planning in energy infrastructure development. But more must be done as CA transforms its energy system to meet its climate target. We analyze lifecycle water use of current and future transport fuel consumption to evaluate impacts & formulate mitigation strategies for the state at the watershed scale. Four 'bounding cases' for CA's future transportation demand to year 2030 are projected for analysis: two scenarios that only meet the 2020 climate target (business-as-usual, BAU) with high / low water use intensity, and two that meet long-term climate target with high / low water use intensity (Fig 1). Our study focuses on the following energy supply chains: (a) liquid fuels from conventional/unconventional oil & gas, (b) thermoelectric and renewable generation technologies, and (c) biofuels (Fig 2-3). We develop plausible siting scenarios that bound the range of possible water sources, impacts, and dispositions to provide insights into how to best allocate water and limit water impacts of energy development. We further identify constraints & opportunities to improve water use efficiency and highlight salient policy relevant lessons. For biofuels we extend our scope to the entire US as most of the biofuels consumed in California are and will be produced from outside of the state. We analyze policy impacts that capture both direct & indirect land use effects across scenarios, thus addressing the major shortcomings of existing studies, which ignore spatial heterogeneity as well as economic effects of crop displacement and the effects of crop intensification and extensification. We use the agronomic-hydrologic model EPIC to capture both green water (GW) and blue water (BW) use at a ~10 square km resolution among three scenarios: (1) a counterfactual scenario with no national biofuel policy, (2) current Renewable Fuels Standard (RFS) mandates, and (3) a proposed national Low Carbon Fuel Standard (LCFS) plus the RFS scenario. Inputs to EPIC are spatially explicit: (a) cropping areas and yields as projected by a partial equilibrium economic model, (b) daily weather data, (c) soil properties (d) N fertilizer application, and (e) irrigation sources and volumes, by crop (Fig 4-5). We assess the differences among biofuel scenarios from 2007-2035 along the following metrics: (1) crop area expansion on prime & marginal lands (Fig 6), (2) Crop-specific & overall annual/seasonal water balances including (2a) water inflows (irrigation & precipitation), (2b) crop-atmosphere interactions: (evaporation & transpiration) and (2c) soil-water flows (runoff & soil infiltration), in mm3 /acre. We found differential water use impacts among biofuel scenarios are a primarily a function of (1) land use conversion, in particular that of formerly uncropped land classes (2) irrigation practices, (3) feedstock water use efficiency, and (4) the longer growing season and a predominance of rainfed cultivation of dedicated biofuel feedstocks. Fig 1-6 available at the linked urls.

EPIC: Helping School Life and Family Support Each Other.

ERIC Educational Resources Information Center

Montgomery, David

1992-01-01

Born out of a 1981 murder, Buffalo (New York) Public Schools' EPIC (Effective Parenting Information for Children) program successfully combines parenting, effective teaching, and community programs to help family and school life support each other. Under EPIC, teachers are advised to help students acquire 23 skills involving self-esteem, rules,…

EPIC: A Framework for Using Video Games in Ethics Education

ERIC Educational Resources Information Center

Schrier, Karen

2015-01-01

Ethics education can potentially be supplemented through the use of video games. This article proposes a novel framework (Ethics Practice and Implementation Categorization [EPIC] Framework), which helps educators choose games to be used for ethics education purposes. The EPIC Framework is derived from a number of classic moral development,…

Searching for the Golden Fleece: The Epic Struggle Continues.

ERIC Educational Resources Information Center

Achilles, C. M.

The task of improving educational administrator preparation is one of epic proportions. The magnitude of the task is expressed using allusions to the epic style and the myth of Jason and the Golden Fleece. The paper presents a quick "environmental scan" to determine how visionary and revolutionary are some current ideas for improvements…

Global wheat production potentials and management flexibility under the representative concentration pathways

NASA Astrophysics Data System (ADS)

Balkovic, Juraj; van der Velde, Marijn; Skalsky, Rastislav; Xiong, Wei; Folberth, Christian; Khabarov, Nikolay; Smirnov, Alexey

2014-05-01

Global wheat production is strongly linked with food security as wheat is one of the main sources of human nutrition. Increasing or stabilizing wheat yields in response to climate change is therefore imperative. To do so will require agricultural management interventions that have different levels of flexibility at regional level. Climate change is expected to worsen wheat growing conditions in many places and thus negatively impact on future management opportunities for sustainable intensification. We quantified, in a spatially explicit manner, global wheat yield developments under the envelope of Representative Concentration Pathways (RCP 2.6, 4.5, 6.0 and 8.5) under current and alternative fertilization and irrigation management to estimate future flexibility to cope with climate change impacts. A large-scale implementation of the EPIC model was integrated with the most recent information on global wheat cultivation currently available, and it was used to simulate regional and global wheat yields and production under historical climate and the RCP-driven and bias-corrected HadGEM2-ES climate projections. Fertilization and irrigation management scenarios were designed to project actual and exploitable (under current irrigation infrastructure) yields as well as the climate- and water-limited yield potentials. With current nutrient and water management, and across all RCPs, the global wheat production at the end of the century decreased from 50 to 100 Mt - with RCP2.6 having the lowest and RCP8.5 the highest impact. Despite the decrease in global wheat production potential on current cropland, the exploitable and climatic production gap of respectively 350 and 580 Mt indicates a considerable flexibility to counteract negative climate change impacts across all RCPs. Agricultural management could increase global wheat production by approximately 30% through intensified fertilization and 50% through improved fertilization and extended irrigation if nutrients or water were not limiting.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chavas, Daniel R.; Izaurralde, Roberto C.; Thomson, Allison M.

Increasing atmospheric greenhouse gas concentrations are expected to induce significant climate change over the next century and beyond, but the impacts on society remain highly uncertain. This work examines potential climate change impacts on the productivity of five major crops in northeastern China: canola, corn, potato, rice, and winter wheat. In addition to determining domain-wide trends, the objective is to identify vulnerable and emergent regions under future climate conditions, defined as having a greater than 10% decrease and increase in productivity, respectively. Data from the ICTP RegCM3 regional climate model for baseline (1961-1990) and future (2071-2100) periods under A2 scenariomore » conditions are used as input in the EPIC agro-ecosystem simulation model in the domain [30ºN, 108ºE] to [42ºN, 123ºE]. Simulations are performed with and without the enhanced CO2 fertilization effect. Results indicate that aggregate potential productivity (i.e. if the crop is grown everywhere) increases 6.5% for rice, 8.3% for canola, 18.6% for corn, 22.9% for potato, and 24.9% for winter wheat, although with significant spatial variability for each crop. However, absent the enhanced CO2 fertilization effect, potential productivity declines in all cases ranging from 2.5-12%. Interannual yield variability remains constant or declines in all cases except rice. Climate variables are found to be more significant drivers of simulated yield changes than changes in soil properties, except in the case of potato production in the northwest where the effects of wind erosion are more significant. Overall, in the future period corn and winter wheat benefit significantly in the North China Plain, rice remains dominant in the southeast and emerges in the northeast, potato and corn yields become viable in the northwest, and potato yields suffer in the southwest with no other crop emerging as a clear beneficiary from among those simulated in this study.« less

K2 Campaign 5 observations of pulsating subdwarf B stars: binaries and super-Nyquist frequencies

NASA Astrophysics Data System (ADS)

Reed, M. D.; Armbrecht, E. L.; Telting, J. H.; Baran, A. S.; Østensen, R. H.; Blay, Pere; Kvammen, A.; Kuutma, Teet; Pursimo, T.; Ketzer, L.; Jeffery, C. S.

2018-03-01

We report the discovery of three pulsating subdwarf B stars in binary systems observed with the Kepler space telescope during Campaign 5 of K2. EPIC 211696659 (SDSS J083603.98+155216.4) is a g-mode pulsator with a white dwarf companion and a binary period of 3.16 d. EPICs 211823779 (SDSS J082003.35+173914.2) and 211938328 (LB 378) are both p-mode pulsators with main-sequence F companions. The orbit of EPIC 211938328 is long (635 ± 146 d) while we cannot constrain that of EPIC 211823779. The p modes are near the Nyquist frequency and so we investigate ways to discriminate super- from sub-Nyquist frequencies. We search for rotationally induced frequency multiplets and all three stars appear to be slow rotators with EPIC 211696659 subsynchronous to its orbit.

Going Paperless

NASA Technical Reports Server (NTRS)

1999-01-01

Sentel Corporation has commercialized NASA's Electronic Portable Information Collection (EPIC) System, which stemmed from a NASA Kennedy Space Center SBIR contract. NASA and Sentel designed, built, and tested work authorization procedures used as a paperless procedures system for Space Shuttle and International Space Station payload processing operations. EPIC is now being applied to various markets including; airplane maintenance, aerospace system data management, shipbuilding industries, shipping industries, law enforcement agencies, and public utilities. KSC is planning a pilot program to use EPIC at the Hypergol Maintenance Facility. In addition, Ames Research Center and KSC are working together to apply EPIC to the area of wireless communication.

EPIC/DSCOVR's Oxygen Absorption Channels: A Cloud Profiling Information Content Analysis

NASA Astrophysics Data System (ADS)

Davis, A. B.; Merlin, G.; Labonnote, L. C.; Cornet, C.; Dubuisson, P.; Ferlay, N.; Parol, F.; Riedi, J.; Yang, Y.

2016-12-01

EPIC/DSCOVR has several spectral channels dedicated to cloud characterization, most notably O2 A- and B-band. Differential optical absorption spectroscopy (DOAS) ratios of in-band and reference channels are less prone to calibration error than the 4 individual signals. Using these ratios, we have replicated for mono-directional (quasi-backscattering) EPIC observations the recent cloud information content analysis by Merlin et al. (AMT-D,8:12709-12758,2015) that was focused on A-band-only but multi-angle observations by POLDER in the past, by AirMSPI in the present, and by 3MI and MAIA in the future. The methodology is based on extensive forward 1D radiative transfer (RT) computations using the ARTDECO model that implements a k-distribution technique for the absorbing (in-band) channels. These synthetic signals are combined into a Bayesian Rodgers-type framework for estimating posterior uncertainty on retrieved quantities. Recall that this formalism calls explicitly for: (1) estimates of instrument error, and (2) prior uncertainty on the retrieved quantities, to which we add (3) reasonable estimates of uncertainty in the non- or otherwise-retrieved properties. Wide ranges of cloud top heights (CTHs) and cloud geometrical thicknesses (CGTs) are examined for a representative selection of cloud optical thicknesses (COTs), solar angles, and surface reflectances. We found that CTH should be reliably retrieved from EPIC data under most circumstances as long as COT can be inferred from non-absorbing channels, and the bias from in-cloud absorption is removed. However, CGT will be hard to determine unless CTH is constrained by independent means. EPIC has several UV channels that could be brought to bear. These findings conflict those of Yang et al. (JQSRT,122:141-149,2013), so we also revisit that more preliminary study that did not account for a realistic level of residual instrument noise in the DOAS ratios. In conclusion, we believe that the present information content analysis will inform the EPIC/DSCOVR Level 2 algorithm development team about what cloud properties to target using the A/B-band channels, depending on the availability of other cloud information.

An autonomous observation and control system based on EPICS and RTS2 for Antarctic telescopes

NASA Astrophysics Data System (ADS)

Zhang, Guang-yu; Wang, Jian; Tang, Peng-yi; Jia, Ming-hao; Chen, Jie; Dong, Shu-cheng; Jiang, Fengxin; Wu, Wen-qing; Liu, Jia-jing; Zhang, Hong-fei

2016-01-01

For unattended telescopes in Antarctic, the remote operation, autonomous observation and control are essential. An EPICS-(Experimental Physics and Industrial Control System) and RTS2-(Remote Telescope System, 2nd Version) based autonomous observation and control system with remoted operation is introduced in this paper. EPICS is a set of open source software tools, libraries and applications developed collaboratively and used worldwide to create distributed soft real-time control systems for scientific instruments while RTS2 is an open source environment for control of a fully autonomous observatory. Using the advantage of EPICS and RTS2, respectively, a combined integrated software framework for autonomous observation and control is established that use RTS2 to fulfil the function of astronomical observation and use EPICS to fulfil the device control of telescope. A command and status interface for EPICS and RTS2 is designed to make the EPICS IOC (Input/Output Controller) components integrate to RTS2 directly. For the specification and requirement of control system of telescope in Antarctic, core components named Executor and Auto-focus for autonomous observation is designed and implemented with remote operation user interface based on browser-server mode. The whole system including the telescope is tested in Lijiang Observatory in Yunnan Province for practical observation to complete the autonomous observation and control, including telescope control, camera control, dome control, weather information acquisition with the local and remote operation.

Underestimation of simulated N2O flux in a model comparison of DayCent, DNDC, and EPIC

USDA-ARS?s Scientific Manuscript database

Process-based models are increasingly used as tool for studying complex agroecosystem interactions N2O emissions from agricultural fields. The widespread use of these models to conduct research and inform policy benefits from periodic model comparisons that assess the state of agroecosystem modeling...

Global wheat production potentials and management flexibility under the representative concentration pathways

NASA Astrophysics Data System (ADS)

Balkovič, Juraj; van der Velde, Marijn; Skalský, Rastislav; Xiong, Wei; Folberth, Christian; Khabarov, Nikolay; Smirnov, Alexey; Mueller, Nathaniel D.; Obersteiner, Michael

2014-11-01

Wheat is the third largest crop globally and an essential source of calories in human diets. Maintaining and increasing global wheat production is therefore strongly linked to food security. A large geographic variation in wheat yields across similar climates points to sizeable yield gaps in many nations, and indicates a regionally variable flexibility to increase wheat production. Wheat is particularly sensitive to a changing climate thus limiting management opportunities to enable (sustainable) intensification with potentially significant implications for future wheat production. We present a comprehensive global evaluation of future wheat yields and production under distinct Representative Concentration Pathways (RCPs) using the Environmental Policy Integrated Climate (EPIC) agro-ecosystem model. We project, in a geographically explicit manner, future wheat production pathways for rainfed and irrigated wheat systems. We explore agricultural management flexibility by quantifying the development of wheat yield potentials under current, rainfed, exploitable (given current irrigation infrastructure), and irrigated intensification levels. Globally, because of climate change, wheat production under conventional management (around the year 2000) would decrease across all RCPs by 37 to 52 and 54 to 103 Mt in the 2050s and 2090s, respectively. However, the exploitable and potential production gap will stay above 350 and 580 Mt, respectively, for all RCPs and time horizons, indicating that negative impacts of climate change can globally be offset by adequate intensification using currently existing irrigation infrastructure and nutrient additions. Future world wheat production on cropland already under cultivation can be increased by ~ 35% through intensified fertilization and ~ 50% through increased fertilization and extended irrigation, if sufficient water would be available. Significant potential can still be exploited, especially in rainfed wheat systems in Russia, Eastern Europe and North America.

The German version of the Expanded Prostate Cancer Index Composite (EPIC): translation, validation and minimal important difference estimation.

PubMed

Umbehr, Martin H; Bachmann, Lucas M; Poyet, Cedric; Hammerer, Peter; Steurer, Johann; Puhan, Milo A; Frei, Anja

2018-02-20

No official German translation exists for the 50-item Expanded Prostate Cancer Index Composite (EPIC), and no minimal important difference (MID) has been established yet. The aim of the study was to translate and validate a German version of the EPIC with cultural adaptation to the different German speaking countries and to establish the MID. We translated and culturally adapted the EPIC into German. For validation, we included a consecutive subsample of 92 patients with localized prostate cancer undergoing radical prostatectomy who participated the Prostate Cancer Outcomes Cohort. Baseline and follow-up assessments took place before and six weeks after prostatectomy in 2010 and 2011. We assessed the EPIC, EORTC QLQ-PR25, Feeling Thermometer, SF-36 and a global rating of health state change variable. We calculated the internal consistency, test-retest reliability, construct validity, responsiveness and MID. For most EPIC domains and subscales, our a priori defined criteria for reliability were fulfilled (construct reliability: Cronbach's alpha 0.7-0.9; test-retest reliability: intraclass-correlation coefficient ≥ 0.7). Cross-sectional and longitudinal correlations between EPIC and EORTC QLQ-PR25 domains ranged from 0.14-0.79, and 0.06-0.5 and 0.08-0.72 for Feeling Thermometer and SF-36, respectively. We established MID values of 10, 4, 12, and 6 for the urinary, bowel, sexual and hormonal domain. The German version of the EPIC is reliable, responsive and valid to measure HRQL in prostate cancer patients and is now available in German language. With the suggested MID we provide interpretation to what extent changes in HRQL are clinically relevant for patients. Hence, study results are of interest beyond German speaking countries.

K2: Extending Kepler's Power to the Ecliptic-Ecliptic Plane Input Catalog

NASA Technical Reports Server (NTRS)

Huber, Daniel; Bryson, Stephen T.

2017-01-01

This document describes the Ecliptic Plane Input Catalog (EPIC) for the K2 mission (Howell et al. 2014). The primary purpose of this catalog is to provide positions and Kepler magnitudes for target management and aperture photometry. The Ecliptic Plane Input Catalog is hosted at MAST (http://archive.stsci.edu/k2/epic/search.php) and should be used for selecting targets when ever possible. The EPIC is updated for future K2 campaigns as their fields of view are finalized and the associated target management is completed. Table 0 summarizes the EPIC updates to date and the ID range for each. The main algorithms used to construct the EPIC are described in Sections 2 through 4. The details for individual campaigns are described in the subsequent sections, with the references listed in the last section. Further details can be found in Huber et al. (2016).

Enhanced representation of soil NO emissions in the ...

EPA Pesticide Factsheets

Modeling of soil nitric oxide (NO) emissions is highly uncertain and may misrepresent its spatial and temporal distribution. This study builds upon a recently introduced parameterization to improve the timing and spatial distribution of soil NO emission estimates in the Community Multiscale Air Quality (CMAQ) model. The parameterization considers soil parameters, meteorology, land use, and mineral nitrogen (N) availability to estimate NO emissions. We incorporate daily year-specific fertilizer data from the Environmental Policy Integrated Climate (EPIC) agricultural model to replace the annual generic data of the initial parameterization, and use a 12 km resolution soil biome map over the continental USA. CMAQ modeling for July 2011 shows slight differences in model performance in simulating fine particulate matter and ozone from Interagency Monitoring of Protected Visual Environments (IMPROVE) and Clean Air Status and Trends Network (CASTNET) sites and NO2 columns from Ozone Monitoring Instrument (OMI) satellite retrievals. We also simulate how the change in soil NO emissions scheme affects the expected O3 response to projected emissions reductions. The National Exposure Research Laboratory (NERL) Computational Exposure Division (CED) develops and evaluates data, decision-support tools, and models to be applied to media-specific or receptor-specific problem areas. CED uses modeling-based approaches to characterize exposures, evaluate fate and transport, and

Methods for Discerning Cloud Reflectivity Changes due to the Indirect Effect of Aerosol: A Pilot-study for Triana

NASA Technical Reports Server (NTRS)

Kinne, S.; Wiscombe, Warren; Einaudi, Franco (Technical Monitor)

2001-01-01

Understanding the effect of aerosol on cloud systems is one of the major challenges in atmospheric and climate research. Local studies suggest a multitude of influences on cloud properties. Yet the overall effect on cloud albedo, a critical parameter in climate simulations, remains uncertain. NASA's Triana mission will provide, from its EPIC multi-spectral imager, simultaneous data on aerosol properties and cloud reflectivity. With Triana's unique position in space these data will be available not only globally but also over the entire daytime, well suited to accommodate the often short lifetimes of aerosol and investigations around diurnal cycles. This pilot study explores the ability to detect relationships between aerosol properties and cloud reflectivity with sophisticated statistical methods. Sample results using data from the EOS Terra platform to simulate Triana are presented.

Exploring the Role of Elementary Parent Involvement Coordinators in a North Georgia Title I Charter School District

ERIC Educational Resources Information Center

Elrod, Philip

2015-01-01

This study explored the role of elementary parent involvement coordinators (EPIC) in a Northeast Georgia Title I Charter School District. EPICs were charged with facilitating programs designed to build social capital and network closure for families. This nested case study explored the experiences of five EPICs, each located in one of the five…

Collaborative development of the EPICS Qt framework Phase I Final Report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mayssat, Robert E.

At Lyncean, a private company spun-off from technology developed at the SLAC National Lab, we have been using EPICS for over a decade. EPICS is ubiquitous on our flagship product – the Compact Light Source. EPICS is not only used to control our laser and accelerator systems, but also to control our x-ray beamlines. The goal of this SBIR is for Lyncean Technologies to spearhead a worldwide collaborative effort for the development of control system tools for EPICS using the Qt framework, a C++-based coding environment that could serve as a competitive alternative to the Java-based Control System Studio (CSS).more » This grant's Phase I, not unlike a feasibility study, is designed for planning and scoping the preparatory work needed for Phase II or other funding opportunities. The three main objectives of this Phase I are (1) to become better acquainted with the existing EPICS Qt software and Qt framework in order to evaluate the best options for ongoing development, (2) to demonstrate that our engineers can lead the EPICS community and jump-start the Qt collaboration, and (3) to identify a scope for our future work with solicited feedback from the EPICS community. This Phase I report includes key technical findings. It clarifies the differences between the two apparently-competing EPICS Qt implementations, caQtDM and the QE Framework; it explains how to create python-bindings, and compares Qt graphical libraries. But this report is also a personal story that narrates the birth of a collaboration. Starting a collaboration is not the work of a single individual, but the work of many. Therefore this report is also an attempt to publicly give credit to many who supported the effort. The main take-away from this grant is the successful birth of an EPICS Qt collaboration, seeded with existing software from the PSI and the Australian Synchrotron. But a lot more needs to be done for the collaboration founders' vision to be realized, and for the collaboration to reach its full potential. To help define the scope of future work, a useful approach we have identified is user experience design (UXD) and is discussed herein.« less

Sensitivity of an Integrated Mesoscale Atmosphere and Agriculture Land Modeling System (WRF/CMAQ-EPIC) to MODIS Vegetation and Lightning Assimilation

EPA Science Inventory

The combined meteorology and air quality modeling system composed of the Weather Research and Forecast (WRF) model and Community Multiscale Air Quality (CMAQ) model is an important decision support tool that is used in research and regulatory decisions related to emissions, meteo...

Simulating unstressed crop development and growth using the Unified Plant Growth Model (UPGM)

USDA-ARS?s Scientific Manuscript database

Since development of the EPIC model in 1989, many versions of the plant growth component have been incorporated into other erosion and crop management models and subsequently modified to meet model objectives (e.g., WEPS, WEPP, SWAT, ALMANAC, GPFARM). This has resulted in different versions of the ...

How could Mosan agriculture be impacted by climate change and future droughts ?

NASA Astrophysics Data System (ADS)

Bauwens, A.; Sohier, C.; Deraedt, D.; Degré, A.

2012-04-01

Despite the great uncertainties regarding the future climatic context, lots of studies have focused on hydrological effects of climate change on the Meuse catchment. It appears that both winter high flows and summer low flows could be exacerbated. Climate change and its impacts on hydrology will thus affect various socio-economic sectors. High flows have been widely studied compared to low-flows. This poster will put the emphasis on a methodology developed in order to study impacts of droughts on agriculture. Agriculture is among the most impacted sectors due to climate change. The consequences could be both positive as negative in accordance with the range of predicted changes and the adaptation capacity of agricultural systems. Most of the existing studies related to climate change on agriculture focused on specific territory. Within the AMICE Interreg IVB project, a transnational approach has been developed to assess droughts impacts on agriculture through the Meuse basin. The project's previous works gave us a common scenario of climate trends and of the evolution of the hydrology in the Meuse basin. The methodology is based on the use of a physically-based model able to simulate the water-soil-plant continuum (derived from EPIC model). In order to be transferable from one country to another, the methodology proposed used data available at the basin scale. The UE soil data base was complemented with local information on agricultural practices and statistics. Three crops have been studied: maize, wheat and barley. The basic cultural calendar is supposed to be the same for the different countries. The methodology developed permits to study the evolution of yields, leaf area index, crops stress due to excess or lack of water through time under different scenarios build up in the frame of the project. It appears that corn is negatively affected by climate change, and thus despite the CO2 fertilization effect. Wheat and barley have similar behavior and are positively affected by climate change and CO2 fertilization. Leaf Area Index study reveals that the different crops start earlier and reach earlier maturity. These first results will be completed with other economic sectors'analysis like drinkable water production, electricity production and navigation. Therefore, the project will progress towards a better understanding of economic effects of future droughts and low-flows.

Use of Two-Part Regression Calibration Model to Correct for Measurement Error in Episodically Consumed Foods in a Single-Replicate Study Design: EPIC Case Study

PubMed Central

Agogo, George O.; van der Voet, Hilko; Veer, Pieter van’t; Ferrari, Pietro; Leenders, Max; Muller, David C.; Sánchez-Cantalejo, Emilio; Bamia, Christina; Braaten, Tonje; Knüppel, Sven; Johansson, Ingegerd; van Eeuwijk, Fred A.; Boshuizen, Hendriek

2014-01-01

In epidemiologic studies, measurement error in dietary variables often attenuates association between dietary intake and disease occurrence. To adjust for the attenuation caused by error in dietary intake, regression calibration is commonly used. To apply regression calibration, unbiased reference measurements are required. Short-term reference measurements for foods that are not consumed daily contain excess zeroes that pose challenges in the calibration model. We adapted two-part regression calibration model, initially developed for multiple replicates of reference measurements per individual to a single-replicate setting. We showed how to handle excess zero reference measurements by two-step modeling approach, how to explore heteroscedasticity in the consumed amount with variance-mean graph, how to explore nonlinearity with the generalized additive modeling (GAM) and the empirical logit approaches, and how to select covariates in the calibration model. The performance of two-part calibration model was compared with the one-part counterpart. We used vegetable intake and mortality data from European Prospective Investigation on Cancer and Nutrition (EPIC) study. In the EPIC, reference measurements were taken with 24-hour recalls. For each of the three vegetable subgroups assessed separately, correcting for error with an appropriately specified two-part calibration model resulted in about three fold increase in the strength of association with all-cause mortality, as measured by the log hazard ratio. Further found is that the standard way of including covariates in the calibration model can lead to over fitting the two-part calibration model. Moreover, the extent of adjusting for error is influenced by the number and forms of covariates in the calibration model. For episodically consumed foods, we advise researchers to pay special attention to response distribution, nonlinearity, and covariate inclusion in specifying the calibration model. PMID:25402487

Using EPIC to search the OCLC Online Union Catalog in a health sciences library.

PubMed

Richwine, P W

1991-01-01

EPIC is a service that provides keyword or subject access to the OCLC Online Union Catalog (OLUC). This capability increases the success rate for title location as well as the potential uses of the OLUC. The features of the EPIC system, application of these features to the OLUC, and specific uses in health sciences libraries are described in this article.

Spatial Analysis of Biomass Supply: Economic and Environmental Impacts

USDA-ARS?s Scientific Manuscript database

The EPIC simulation model is used with SSURGO soils, field location information, and a transportation cost model to analyze potential biomass supply for a West Central MN bioenergy plant. The simulation shows the relationship between biomass price, locations of where biomass production is profitable...

The EPIC-MOS Particle-Induced Background Spectra

NASA Technical Reports Server (NTRS)

Kuntz, K. D.; Sowden, S. L.

2007-01-01

In order to analyse diffuse emission that fills the field of view, one must accurately characterize the instrumental backgrounds. For the XMM-Newton EPIC instrument these backgrounds include a temporally variable "quiescent" component. as well as the strongly variable soft proton contamination. We have characterized the spectral and spatial response of the EPIC detectors to these background components and have developed tools to remove these backgrounds from observations. The "quiescent" component was characterized using a combination of the filter-wheel-closed data and a database of unexposed-region data. The soft proton contamination was characterized by differencing images and spectra taken during flared and flare-free intervals. After application of our modeled backgrounds, the differences between independent observations of the same region of "blank sky" are consistent with the statistical uncertainties except when there is clear spectral evidence of solar wind charge exchange emission. Using a large sample of blank sky data, we show that strong magnetospheric SWCX emission requires elevated solar wind fluxes; observations through the densest part of the magnetosheath are not necessarily strongly contaminated with SWCX emission.

Completion of the LANSCE Proton Storage Ring Control System Upgrade -- A Successful Integration of EPICS Into a Running Control System

NASA Astrophysics Data System (ADS)

Schaller, S. C.; Bjorklund, E. A.; Carr, G. P.; Faucett, J. A.; Oothoudt, M. A.

1997-05-01

The Los Alamos Neutron Scattering Center (LANSCE) Proton Storage Ring (PSR) control system upgrade was completed in 1996. In previous work, much of a PDP-11-based control system was replaced with Experimental Physics and Industrial Control System (EPICS) controls. Several parts of the old control system which used a VAX for operator displays and direct access to a CAMAC serial highway still remained. The old system was preserved as a "fallback" if the new EPICS-based system had problems. The control system upgrade completion included conversion of several application programs to EPICS-based operator interfaces, moving some data acquisition hardware to EPICS Input-Output Controllers (IOCs), and the implementation of new gateway software to complete the overall control system interoperability. Many operator interface (OPI) screens, written by LANSCE operators, have been incorporated in the new system. The old PSR control system hardware was removed. The robustness and reliability of the new controls obviated the need for a fallback capability.

Comparison of two methods for calculating the P sorption capacity parameter in soils

USDA-ARS?s Scientific Manuscript database

Phosphorus (P) cycling in soils is an important process affecting P movement through the landscape. The P cycling routines in many computer models are based on the relationships developed for the EPIC model. An important parameter required for this model is the P sorption capacity parameter (PSP). I...

A Longitudinal Study of Predictors of Sexual Dysfunction in Men on Active Surveillance for Prostate Cancer.

PubMed

Pearce, Shane M; Wang, Chi-Hsiung E; Victorson, David E; Helfand, Brian T; Novakovic, Kristian R; Brendler, Charles B; Albaugh, Jeffrey A

2015-09-01

The aim of this study was to examine the relationship between sexual dysfunction, repeat biopsies and other demographic and clinical factors in men on active surveillance (AS). Patient-reported outcomes (PROs) measures were administered at enrollment and every 6 months to assess quality of life (QOL), psychosocial and urological health outcomes. Using mixed-effects models, we examined the impact of repeat biopsies, total number of cores taken, anxiety, age, and comorbidity on sexual function over the first 24 months of enrolling in AS. PROs included the Expanded Prostate Cancer Index Composite-26 (EPIC-26) Sexual Function (SF) subscale, the American Urological Association-Symptom Index (AUA-SI), and the Memorial Anxiety Scale for Prostate Cancer (MAX-PC). At enrollment (n = 195), mean age was 66.5 ± 6.8 with a mean EPIC-26 SF score of 61.4 ± 30.4. EPIC-26 SF scores steadily decreased to 53.9 ± 30.7 at 24 months (P < 0.01). MAX-PC scores also progressively decreased over time (P = 0.03). Factors associated with lower EPIC-26 scores over time included age, unemployed status, diabetes, coronary artery disease, and hypertension (all P < 0.05). Higher prostate-specific antigen (PSA) was associated with a more rapid decline in EPIC-26 SF over time (P = 0.03). In multivariable analysis, age, diabetes, and PSA × time interaction remained significant predictors of diminished sexual function. Anxiety, number of biopsies, and total cores taken did not predict sexual dysfunction or change over time in our cohort. Men on AS experienced a gradual decline in sexual function during the first 24 months of enrollment. Older age, PSA × time, and diabetes were all independent predictors of diminished sexual function over time. Anxiety, AUA-SI, the number of cores and the number of biopsies were not predictors of reduced sexual function in men in AS.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Xiong, Wei; Balkovic, Juraj; van der Velde, M.

Crop models are increasingly used to assess impacts of climate change/variability and management practices on productivity and environmental performance of alternative cropping systems. Calibration is an important procedure to improve reliability of model simulations, especially for large area applications. However, global-scale crop model calibration has rarely been exercised due to limited data availability and expensive computing cost. Here we present a simple approach to calibrate Environmental Policy Integrated Climate (EPIC) model for a global implementation of rice. We identify four parameters (potential heat unit – PHU, planting density – PD, harvest index – HI, and biomass energy ratio – BER)more » and calibrate them regionally to capture the spatial pattern of reported rice yield in 2000. Model performance is assessed by comparing simulated outputs with independent FAO national data. The comparison demonstrates that the global calibration scheme performs satisfactorily in reproducing the spatial pattern of rice yield, particularly in main rice production areas. Spatial agreement increases substantially when more parameters are selected and calibrated, but with varying efficiencies. Among the parameters, PHU and HI exhibit the highest efficiencies in increasing the spatial agreement. Simulations with different calibration strategies generate a pronounced discrepancy of 5–35% in mean yields across latitude bands, and a small to moderate difference in estimated yield variability and yield changing trend for the period of 1981–2000. Present calibration has little effects in improving simulated yield variability and trends at both regional and global levels, suggesting further works are needed to reproduce temporal variability of reported yields. This study highlights the importance of crop models’ calibration, and presents the possibility of a transparent and consistent up scaling approach for global crop simulations given current availability of global databases of weather, soil, crop calendar, fertilizer and irrigation management information, and reported yield.« less

Pettit performs the EPIC Card Testing and X2R10 Software Transition

NASA Image and Video Library

2011-12-28

ISS030-E-022574 (28 Dec. 2011) -- NASA astronaut Don Pettit (foreground),Expedition 30 flight engineer, performs the Enhanced Processor and Integrated Communications (EPIC) card testing and X2R10 software transition. The software transition work will include EPIC card testing and card installations, and monitoring of the upgraded Multiplexer/ Demultiplexer (MDM) computers. Dan Burbank, Expedition 30 commander, is setting up a camcorder in the background.

Pettit performs the EPIC Card Testing and X2R10 Software Transition

NASA Image and Video Library

2011-12-28

ISS030-E-022575 (28 Dec. 2011) -- NASA astronaut Don Pettit (foreground),Expedition 30 flight engineer, performs the Enhanced Processor and Integrated Communications (EPIC) card testing and X2R10 software transition. The software transition work will include EPIC card testing and card installations, and monitoring of the upgraded Multiplexer/ Demultiplexer (MDM) computers. Dan Burbank, Expedition 30 commander, is setting up a camcorder in the background.

The ExtraSolar Planetary Imaging Coronagraph

NASA Astrophysics Data System (ADS)

Clampin, M.; Lyon, R.

2010-10-01

The Extrasolar Planetary Imaging Coronagraph (EPIC) is a 1.65-m telescope employing a visible nulling coronagraph (VNC) to deliver high-contrast images of extrasolar system architectures. EPIC will survey the architectures of exosolar systems, and investigate the physical nature of planets in these solar systems. EPIC will employ a Visible Nulling Coronagraph (VNC), featuring an inner working angle of ≤2λ/D, and offers the ideal balance between performance and feasibility of implementation, while not sacrificing science return. The VNC does not demand unrealistic thermal stability from its telescope optics, achieving its primary mirror surface figure requires no new technology, and pointing stability is within state of the art. The EPIC mission will be launched into a drift-away orbit with a five-year mission lifetime.

Health-Related Quality of Life 2 Years After Treatment With Radical Prostatectomy, Prostate Brachytherapy, or External Beam Radiotherapy in Patients With Clinically Localized Prostate Cancer

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ferrer, Montserrat; CIBER en Epidemiologia y Salud Publica; Suarez, Jose Francisco

Purpose: To compare treatment impact on health-related quality of life (HRQL) in patients with localized prostate cancer, from before treatment to 2 years after the intervention. Methods and Materials: This was a longitudinal, prospective study of 614 patients with localized prostate cancer treated with radical prostatectomy (134), three-dimensional external conformal radiotherapy (205), and brachytherapy (275). The HRQL questionnaires administered before and after treatment (months 1, 3, 6, 12, and 24) were the Medical Outcomes Study 36-Item Short Form, the Functional Assessment of Cancer Therapy (General and Prostate Specific), the Expanded Prostate Cancer Index Composite (EPIC), and the American Urological Associationmore » Symptom Index. Differences between groups were tested by analysis of variance and within-group changes by univariate repeated-measures analysis of variance. Generalized estimating equations (GEE) models were constructed to assess between-group differences in HRQL at 2 years of follow-up after adjusting for clinical variables. Results: In each treatment group, HRQL initially deteriorated after treatment with subsequent partial recovery. However, some dimension scores were still significantly lower after 2 years of treatment. The GEE models showed that, compared with the brachytherapy group, radical prostatectomy patients had worse EPIC sexual summary and urinary incontinence scores (-20.4 and -14.1; p < 0.001), and external radiotherapy patients had worse EPIC bowel, sexual, and hormonal summary scores (-3.55, -5.24, and -1.94; p < 0.05). Prostatectomy patients had significantly better EPIC urinary irritation scores than brachytherapy patients (+4.16; p < 0.001). Conclusions: Relevant differences between treatment groups persisted after 2 years of follow-up. Radical prostatectomy had a considerable negative effect on sexual functioning and urinary continence. Three-dimensional conformal radiotherapy had a moderate negative impact on bowel functioning, and brachytherapy caused moderate urinary irritation. These results provide relevant information for clinical decision making.« less

A comprehensively quantitative method of evaluating the impact of drought on crop yield using daily multi-scale SPEI and crop growth process model.

PubMed

Wang, Qianfeng; Wu, Jianjun; Li, Xiaohan; Zhou, Hongkui; Yang, Jianhua; Geng, Guangpo; An, Xueli; Liu, Leizhen; Tang, Zhenghong

2017-04-01

The quantitative evaluation of the impact of drought on crop yield is one of the most important aspects in agricultural water resource management. To assess the impact of drought on wheat yield, the Environmental Policy Integrated Climate (EPIC) crop growth model and daily Standardized Precipitation Evapotranspiration Index (SPEI), which is based on daily meteorological data, are adopted in the Huang Huai Hai Plain. The winter wheat crop yields are estimated at 28 stations, after calibrating the cultivar coefficients based on the experimental site data, and SPEI data was taken 11 times across the growth season from 1981 to 2010. The relationship between estimated yield and multi-scale SPEI were analyzed. The optimum time scale SPEI to monitor drought during the crop growth period was determined. The reference yield was determined by averaging the yields from numerous non-drought years. From this data, we propose a comprehensive quantitative method which can be used to predict the impact of drought on wheat yields by combining the daily multi-scale SPEI and crop growth process model. This method was tested in the Huang Huai Hai Plain. The results suggested that estimation of calibrated EPIC was a good predictor of crop yield in the Huang Huai Hai Plain, with lower RMSE (15.4 %) between estimated yield and observed yield at six agrometeorological stations. The soil moisture at planting time was affected by the precipitation and evapotranspiration during the previous 90 days (about 3 months) in the Huang Huai Hai Plain. SPEI G90 was adopted as the optimum time scale SPEI to identify the drought and non-drought years, and identified a drought year in 2000. The water deficit in the year 2000 was significant, and the rate of crop yield reduction did not completely correspond with the volume of water deficit. Our proposed comprehensive method which quantitatively evaluates the impact of drought on crop yield is reliable. The results of this study further our understanding why the adoption of counter measures against drought is important and direct farmers to choose drought-resistant crops.

From a Million Miles Away, NASA Camera Shows Moon Crossing Face of Earth

NASA Image and Video Library

2015-08-05

This animation shows images of the far side of the moon, illuminated by the sun, as it crosses between the DISCOVR spacecraft's Earth Polychromatic Imaging Camera (EPIC) camera and telescope, and the Earth - one million miles away. Credits: NASA/NOAA A NASA camera aboard the Deep Space Climate Observatory (DSCOVR) satellite captured a unique view of the moon as it moved in front of the sunlit side of Earth last month. The series of test images shows the fully illuminated “dark side” of the moon that is never visible from Earth. The images were captured by NASA’s Earth Polychromatic Imaging Camera (EPIC), a four megapixel CCD camera and telescope on the DSCOVR satellite orbiting 1 million miles from Earth. From its position between the sun and Earth, DSCOVR conducts its primary mission of real-time solar wind monitoring for the National Oceanic and Atmospheric Administration (NOAA). Read more: www.nasa.gov/feature/goddard/from-a-million-miles-away-na... NASA image use policy. NASA Goddard Space Flight Center enables NASA’s mission through four scientific endeavors: Earth Science, Heliophysics, Solar System Exploration, and Astrophysics. Goddard plays a leading role in NASA’s accomplishments by contributing compelling scientific knowledge to advance the Agency’s mission. Follow us on Twitter Like us on Facebook Find us on Instagram

From a Million Miles Away, NASA Camera Shows Moon Crossing Face of Earth

NASA Image and Video Library

2017-12-08

This animation still image shows the far side of the moon, illuminated by the sun, as it crosses between the DISCOVR spacecraft's Earth Polychromatic Imaging Camera (EPIC) camera and telescope, and the Earth - one million miles away. Credits: NASA/NOAA A NASA camera aboard the Deep Space Climate Observatory (DSCOVR) satellite captured a unique view of the moon as it moved in front of the sunlit side of Earth last month. The series of test images shows the fully illuminated “dark side” of the moon that is never visible from Earth. The images were captured by NASA’s Earth Polychromatic Imaging Camera (EPIC), a four megapixel CCD camera and telescope on the DSCOVR satellite orbiting 1 million miles from Earth. From its position between the sun and Earth, DSCOVR conducts its primary mission of real-time solar wind monitoring for the National Oceanic and Atmospheric Administration (NOAA). Read more: www.nasa.gov/feature/goddard/from-a-million-miles-away-na... NASA image use policy. NASA Goddard Space Flight Center enables NASA’s mission through four scientific endeavors: Earth Science, Heliophysics, Solar System Exploration, and Astrophysics. Goddard plays a leading role in NASA’s accomplishments by contributing compelling scientific knowledge to advance the Agency’s mission. Follow us on Twitter Like us on Facebook Find us on Instagram

Implementation of EPICS based vacuum control system for variable energy cyclotron centre, Kolkata

NASA Astrophysics Data System (ADS)

Roy, Anindya; Bhole, R. B.; Nandy, Partha P.; Yadav, R. C.; Pal, Sarbajit; Roy, Amitava

2015-03-01

The vacuum system of the Room Temperature (K = 130) Cyclotron of Variable Energy Cyclotron Centre is comprised of vacuum systems of main machine and Beam Transport System. The vacuum control system is upgraded to a PLC based Automated system from the initial relay based Manual system. The supervisory control of the vacuum system is implemented in Experimental Physics and Industrial Control System (EPICS). An EPICS embedded ARM based vacuum gauge controller is developed to mitigate the requirement of vendor specific gauge controller for gauges and also for seamless integration of the gauge controllers with the control system. A set of MS-Windows ActiveX components with embedded EPICS Channel Access interface are developed to build operator interfaces with less complex programming and to incorporate typical Windows feature, e.g., user authentication, file handling, better fonts, colors, mouse actions etc. into the operator interfaces. The control parameters, monitoring parameters, and system interlocks of the system are archived in MySQL based EPICS MySQL Archiver developed indigenously. In this paper, we describe the architecture, the implementation details, and the performance of the system.

Optical design of the EPIC-IM crossed Dragone telescope

NASA Astrophysics Data System (ADS)

Tran, Huan; Johnson, Brad; Dragovan, Mark; Bock, James; Aljabri, Abdullah; Amblard, Alex; Bauman, Daniel; Betoule, Marc; Chui, Talso; Colombo, Loris; Cooray, Asantha; Crumb, Dustin; Day, Peter; Dickenson, Clive; Dowell, Darren; Golwala, Sunil; Gorski, Krzysztof; Hanany, Shaul; Holmes, Warren; Irwin, Kent; Keating, Brian; Kuo, Chao-Lin; Lee, Adrian; Lange, Andrew; Lawrence, Charles; Meyer, Steve; Miller, Nate; Nguyen, Hien; Pierpaoli, Elena; Ponthieu, Nicolas; Puget, Jean-Loup; Raab, Jeff; Richards, Paul; Satter, Celeste; Seiffert, Mike; Shimon, Meir; Williams, Brett; Zmuidzinas, Jonas

2010-07-01

The Experimental Probe of Inflationary Cosmology - Intermediate Mission (EPIC-IM) is a concept for the NASA Einstein Inflation Probe satellite. EPIC-IM is designed to characterize the polarization properties of the Cosmic Microwave Background to search for the B-mode polarization signal characteristic of gravitational waves generated during the epoch of Inflation in the early universe. EPIC-IM employs a large focal plane with 11,000 detectors operating in 9 wavelength bands to provide 30 times higher sensitivity than the currently operating Planck satellite. The optical design is based on a wide-field 1.4 m crossed-Dragone telescope, an aperture that allows not only comprehensive measurements of Inflationary B-mode polarization, but also measurements of the E-mode and lensing polarization signals to cosmological limits, as well as all-sky maps of Galactic polarization with unmatched sensitivity and angular resolution. The optics are critical to measuring these extremely faint polarization signals, and any design must meet demanding requirements on systematic error control. We describe the EPIC-IM crossed Dragone optical design, its polarization properties, and far-sidelobe response.

Implementation of EPICS based vacuum control system for variable energy cyclotron centre, Kolkata.

PubMed

Roy, Anindya; Bhole, R B; Nandy, Partha P; Yadav, R C; Pal, Sarbajit; Roy, Amitava

2015-03-01

The vacuum system of the Room Temperature (K = 130) Cyclotron of Variable Energy Cyclotron Centre is comprised of vacuum systems of main machine and Beam Transport System. The vacuum control system is upgraded to a PLC based Automated system from the initial relay based Manual system. The supervisory control of the vacuum system is implemented in Experimental Physics and Industrial Control System (EPICS). An EPICS embedded ARM based vacuum gauge controller is developed to mitigate the requirement of vendor specific gauge controller for gauges and also for seamless integration of the gauge controllers with the control system. A set of MS-Windows ActiveX components with embedded EPICS Channel Access interface are developed to build operator interfaces with less complex programming and to incorporate typical Windows feature, e.g., user authentication, file handling, better fonts, colors, mouse actions etc. into the operator interfaces. The control parameters, monitoring parameters, and system interlocks of the system are archived in MySQL based EPICS MySQL Archiver developed indigenously. In this paper, we describe the architecture, the implementation details, and the performance of the system.

Serial Interface through Stream Protocol on EPICS Platform for Distributed Control and Monitoring

NASA Astrophysics Data System (ADS)

Das Gupta, Arnab; Srivastava, Amit K.; Sunil, S.; Khan, Ziauddin

2017-04-01

Remote operation of any equipment or device is implemented in distributed systems in order to control and proper monitoring of process values. For such remote operations, Experimental Physics and Industrial Control System (EPICS) is used as one of the important software tool for control and monitoring of a wide range of scientific parameters. A hardware interface is developed for implementation of EPICS software so that different equipment such as data converters, power supplies, pump controllers etc. could be remotely operated through stream protocol. EPICS base was setup on windows as well as Linux operating system for control and monitoring while EPICS modules such as asyn and stream device were used to interface the equipment with standard RS-232/RS-485 protocol. Stream Device protocol communicates with the serial line with an interface to asyn drivers. Graphical user interface and alarm handling were implemented with Motif Editor and Display Manager (MEDM) and Alarm Handler (ALH) command line channel access utility tools. This paper will describe the developed application which was tested with different equipment and devices serially interfaced to the PCs on a distributed network.

A Generic and Efficient E-field Parallel Imaging Correlator for Next-Generation Radio Telescopes

NASA Astrophysics Data System (ADS)

Thyagarajan, Nithyanandan; Beardsley, Adam P.; Bowman, Judd D.; Morales, Miguel F.

2017-05-01

Modern radio telescopes are favouring densely packed array layouts with large numbers of antennas (NA ≳ 1000). Since the complexity of traditional correlators scales as O(N_A^2), there will be a steep cost for realizing the full imaging potential of these powerful instruments. Through our generic and efficient E-field Parallel Imaging Correlator (epic), we present the first software demonstration of a generalized direct imaging algorithm, namely the Modular Optimal Frequency Fourier imager. Not only does it bring down the cost for dense layouts to O(N_A log _2N_A) but can also image from irregular layouts and heterogeneous arrays of antennas. epic is highly modular, parallelizable, implemented in object-oriented python, and publicly available. We have verified the images produced to be equivalent to those from traditional techniques to within a precision set by gridding coarseness. We have also validated our implementation on data observed with the Long Wavelength Array (LWA1). We provide a detailed framework for imaging with heterogeneous arrays and show that epic robustly estimates the input sky model for such arrays. Antenna layouts with dense filling factors consisting of a large number of antennas such as LWA, the Square Kilometre Array, Hydrogen Epoch of Reionization Array, and Canadian Hydrogen Intensity Mapping Experiment will gain significant computational advantage by deploying an optimized version of epic. The algorithm is a strong candidate for instruments targeting transient searches of fast radio bursts as well as planetary and exoplanetary phenomena due to the availability of high-speed calibrated time-domain images and low output bandwidth relative to visibility-based systems.

Assessing quality of life in patients with prostate cancer: a systematic and standardized comparison of available instruments.

PubMed

Schmidt, Stefanie; Garin, Olatz; Pardo, Yolanda; Valderas, José M; Alonso, Jordi; Rebollo, Pablo; Rajmil, Luis; Garcia-Forero, Carlos; Ferrer, Montse

2014-10-01

The objective was to obtain a standardized evaluation of available prostate cancer-specific quality of life instruments used in patients with early-stage disease. We carried out systematic literature reviews in the PubMed database to identify manuscripts which contained information regarding either the development process or metric properties of prostate cancer-specific quality of life instruments. Each instrument was evaluated by two experts, independently, using the Evaluating Measures of Patient-Reported Outcomes (EMPRO) tool. An overall and seven attribute-specific EMPRO scores were calculated (range 0-100, worst to best): measurement model, reliability, validity, responsiveness, interpretability, burden and alternative forms. Eight instruments and 57 manuscripts (2-15 per instrument) were identified. The Expanded Prostate Cancer Index Composite (EPIC) was the best rated (overall EMPRO score 83.1 points). Good results were also obtained by University of California Los Angeles-Prostate Cancer Index (UCLA-PCI), Patient-Oriented Prostate Utility Scale (PORPUS) and Prostate Cancer Quality of Life Instrument (PC-QoL) with 77.3, 70.5 and 64.8 points, respectively. These four instruments passed with distinction the validity and responsiveness evaluation. Insufficient reliability results were observed for UCLA-PCI and PORPUS. Current evidence supports the choice of EPIC, PORPUS or PC-QoL. Attribute-specific EMPRO results facilitate selecting the adequate instrument for every purpose. For longitudinal studies or clinical trials, where responsiveness is the priority, EPIC or PC-QoL should be considered. We recommend the PORPUS for economic evaluations because it allows cost-utility analysis, and EPIC short versions to minimize administration burden.

An efficient method to find potentially universal population genetic markers, applied to metazoans

PubMed Central

2010-01-01

Background Despite the impressive growth of sequence databases, the limited availability of nuclear markers that are sufficiently polymorphic for population genetics and phylogeography and applicable across various phyla restricts many potential studies, particularly in non-model organisms. Numerous introns have invariant positions among kingdoms, providing a potential source for such markers. Unfortunately, most of the few known EPIC (Exon Primed Intron Crossing) loci are restricted to vertebrates or belong to multigenic families. Results In order to develop markers with broad applicability, we designed a bioinformatic approach aimed at avoiding multigenic families while identifying intron positions conserved across metazoan phyla. We developed a program facilitating the identification of EPIC loci which allowed slight variation in intron position. From the Homolens databases we selected 29 gene families which contained 52 promising introns for which we designed 93 primer pairs. PCR tests were performed on several ascidians, echinoderms, bivalves and cnidarians. On average, 24 different introns per genus were amplified in bilaterians. Remarkably, five of the introns successfully amplified in all of the metazoan genera tested (a dozen genera, including cnidarians). The influence of several factors on amplification success was investigated. Success rate was not related to the phylogenetic relatedness of a taxon to the groups that most influenced primer design, showing that these EPIC markers are extremely conserved in animals. Conclusions Our new method now makes it possible to (i) rapidly isolate a set of EPIC markers for any phylum, even outside the animal kingdom, and thus, (ii) compare genetic diversity at potentially homologous polymorphic loci between divergent taxa. PMID:20836842

An optimized library for reference-based deconvolution of whole-blood biospecimens assayed using the Illumina HumanMethylationEPIC BeadArray.

PubMed

Salas, Lucas A; Koestler, Devin C; Butler, Rondi A; Hansen, Helen M; Wiencke, John K; Kelsey, Karl T; Christensen, Brock C

2018-05-29

Genome-wide methylation arrays are powerful tools for assessing cell composition of complex mixtures. We compare three approaches to select reference libraries for deconvoluting neutrophil, monocyte, B-lymphocyte, natural killer, and CD4+ and CD8+ T-cell fractions based on blood-derived DNA methylation signatures assayed using the Illumina HumanMethylationEPIC array. The IDOL algorithm identifies a library of 450 CpGs, resulting in an average R 2  = 99.2 across cell types when applied to EPIC methylation data collected on artificial mixtures constructed from the above cell types. Of the 450 CpGs, 69% are unique to EPIC. This library has the potential to reduce unintended technical differences across array platforms.

Proceedings of the Twenty-Fourth Annual Conference of the Cognitive Science Society

DTIC Science & Technology

2002-01-01

6 Walter Schneider (University of Pittsburgh) A Cognitive Approach to Designing Human Error...Experiment Design and Comparison of Human and Model Data: David Diller and Yvette Tenney (BBN Technologies) An EPIC-Soar Model of Concurrent...the Roles of Design History and Affordances in the HIPE Theory of Function

DSCOVR_EPIC_L2_AER_01

Atmospheric Science Data Center

2018-04-23

DSCOVR_EPIC_L2_AER_01 The Aerosol UV product provides aerosol and UV products in three tiers. Tier 1 products include Absorbing Aerosol Index (AAI) and above-cloud-aerosol optical depth (ACAOD). Tier 2 ...

Quantitative food intake in the EPIC-Germany cohorts. European Investigation into Cancer and Nutrition.

PubMed

Schulze, M B; Brandstetter, B R; Kroke, A; Wahrendorf, J; Boeing, H

1999-01-01

The EPIC-Heidelberg and the EPIC-Potsdam studies with about 53,000 study participants represent the German contribution to the EPIC (European Investigation into Cancer and Nutrition) cohort study. Within the EPIC study, standardized 24-hour dietary recalls were applied as a quantitative calibration method in order to estimate the amount of scaling bias introduced by the varying center-specific dietary assessment methods. This article presents intake of food items and food groups in the two German cohorts estimated by 24-hour quantitative dietary recalls. Recalls from 1,013 men and 1,078 women in Heidelberg and 1,032 men and 898 women in Potsdam were included in the analysis. The intake of recorded food items or recipe ingredients as well as fat used for cooking was summarized into 16 main food groups and a variety of different subgroups stratified by sex and weighted for the day of the week and age. In more than 90% of the recalls, consumption of dairy products, cereals and cereal products, bread, fat, and non-alcoholic beverages, particularly coffee/tea, was reported. Inter-cohort evaluations revealed that bread, potatoes, fruit and fat were consumed in higher amounts in the Potsdam cohort while the opposite was found for pasta/rice, non-alcoholic, and alcoholic beverages. It was concluded that the exposure variation was increased by having two instead of one EPIC study centers in Germany. Copyright 1999 S. Karger AG, Basel

The impact exploration of agricultural drought on winter wheat yield in the North China Plain

NASA Astrophysics Data System (ADS)

Yang, Jianhua; Wu, Jianjun; Han, Xinyi; Zhou, Hongkui

2017-04-01

Drought is one of the most serious agro-climatic disasters in the North China Plain, which has a great influence on winter wheat yield. Global warming exacerbates the drought trend of this region, so it is important to study the effect of drought on winter wheat yield. In order to assess the drought-induced winter wheat yield losses, SPEI (standardized precipitation evapotranspiration index), the widely used drought index, was selected to quantify the drought from 1981 to 2013. Additionally, the EPIC (Environmental Policy Integrated Climate) crop model was used to simulate winter wheat yield at 47 stations in this region from 1981 to 2013. We analyzed the relationship between winter wheat yield and the SPEI at different time scales in each month during the growing season. The trends of the SPEI and the trends of winter wheat yield at 47 stations over the past 32 years were compared with each other. To further quantify the effect of drought on winter wheat yield, we defined the year that SPEI varied from -0.5 to 0.5 as the normal year, and calculated the average winter wheat yield of the normal years as a reference yield, then calculated the reduction ratios of winter wheat based on the yields mentioned above in severe drought years. As a reference, we compared the results with the reduction ratios calculated from the statistical yield data. The results showed that the 9 to 12-month scales' SPEI in April, May and June had a high correlation with winter wheat yield. The trends of the SPEI and the trends of winter wheat yield over the past 32 years showed a positive correlation (p<0.01) and have similar spatial distributions. The proportion of the stations with the same change trend between the SPEI and winter wheat yield was 70%, indicating that drought was the main factor leading to a decline in winter wheat yield in this region. The reduction ratios based on the simulated yield and the reduction ratios calculated from the statistical yield data have a high positive correlation (p<0.01), which may provide a way to quantitatively evaluate the winter wheat yield losses caused by drought. Key words: drought, winter wheat yield, SPEI, EPIC, the North China Plain

The Experimental Projectile Impact Chamber (EPIC) at Centro de Astrobiología, Spain: Reproducibility and verification of scaling relations.

NASA Astrophysics Data System (ADS)

Ormö, J.; Wünnemann, K.; Collins, G.; Melero Asensio, I.

2012-09-01

The Experimental Projectile Impact Chamber (EPIC) consists of a 20.5mm caliber, compressed gas gun and a 7m wide test bed. It is possible to vary the projectile size and density, the velocity up to about 5001n/"s, the impact angle. and the target composition. The EPIC is especially designed for the analysis of impacts into unconsolidated and liquid targets. i.e. allowing the use of gravity scaling. The general objective with the EPIC is to analyze the cratering and modification processes at wet-target (e.g. marinle) impacts. We have carried out 14 shots into dry sand targets with two projectile compositions (light and weak; heavy and strong), at two impact angles. at three impact velocities, and in both quarter-space and half- space geometries. We recorded the impacts with a high-speed camera and compared the results with numerical simulations using iSALE. The evaluation demonstrated that there are noticeable differences between the results from the two projectile types, but that the crater dimensions are consistent with scaling laws based on other impact experiments [1]. This proves the usefulness of the EPIC in the analysis of natural impacts.

Implementation of EPICS based vacuum control system for variable energy cyclotron centre, Kolkata

DOE Office of Scientific and Technical Information (OSTI.GOV)

Roy, Anindya, E-mail: r-ani@vecc.gov.in; Bhole, R. B.; Nandy, Partha P.

2015-03-15

The vacuum system of the Room Temperature (K = 130) Cyclotron of Variable Energy Cyclotron Centre is comprised of vacuum systems of main machine and Beam Transport System. The vacuum control system is upgraded to a PLC based Automated system from the initial relay based Manual system. The supervisory control of the vacuum system is implemented in Experimental Physics and Industrial Control System (EPICS). An EPICS embedded ARM based vacuum gauge controller is developed to mitigate the requirement of vendor specific gauge controller for gauges and also for seamless integration of the gauge controllers with the control system. A setmore » of MS-Windows ActiveX components with embedded EPICS Channel Access interface are developed to build operator interfaces with less complex programming and to incorporate typical Windows feature, e.g., user authentication, file handling, better fonts, colors, mouse actions etc. into the operator interfaces. The control parameters, monitoring parameters, and system interlocks of the system are archived in MySQL based EPICS MySQL Archiver developed indigenously. In this paper, we describe the architecture, the implementation details, and the performance of the system.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sinistore, Julie C.; Reinemann, D. J.; Izaurralde, Roberto C.

Spatial variability in yields and greenhouse gas emissions from soils has been identified as a key source of variability in life cycle assessments (LCAs) of agricultural products such as cellulosic ethanol. This study aims to conduct an LCA of cellulosic ethanol production from switchgrass in a way that captures this spatial variability and tests results for sensitivity to using spatially averaged results. The Environment Policy Integrated Climate (EPIC) model was used to calculate switchgrass yields, greenhouse gas (GHG) emissions, and nitrogen and phosphorus emissions from crop production in southern Wisconsin and Michigan at the watershed scale. These data were combinedmore » with cellulosic ethanol production data via ammonia fiber expansion and dilute acid pretreatment methods and region-specific electricity production data into an LCA model of eight ethanol production scenarios. Standard deviations from the spatial mean yields and soil emissions were used to test the sensitivity of net energy ratio, global warming potential intensity, and eutrophication and acidification potential metrics to spatial variability. Substantial variation in the eutrophication potential was also observed when nitrogen and phosphorus emissions from soils were varied. This work illustrates the need for spatially explicit agricultural production data in the LCA of biofuels and other agricultural products.« less

A Longitudinal Study of Predictors of Sexual Dysfunction in Men on Active Surveillance for Prostate Cancer

PubMed Central

Pearce, Shane M; Wang, Chi-Hsiung E; Victorson, David E; Helfand, Brian T; Novakovic, Kristian R; Brendler, Charles B; Albaugh, Jeffrey A

2015-01-01

Aim The aim of this study was to examine the relationship between sexual dysfunction, repeat biopsies and other demographic and clinical factors in men on active surveillance (AS). Methods Patient-reported outcomes (PROs) measures were administered at enrollment and every 6 months to assess quality of life (QOL), psychosocial and urological health outcomes. Using mixed-effects models, we examined the impact of repeat biopsies, total number of cores taken, anxiety, age, and comorbidity on sexual function over the first 24 months of enrolling in AS. Main Outcome Measures PROs included the Expanded Prostate Cancer Index Composite-26 (EPIC-26) Sexual Function (SF) subscale, the American Urological Association-Symptom Index (AUA-SI), and the Memorial Anxiety Scale for Prostate Cancer (MAX-PC). Results At enrollment (n = 195), mean age was 66.5 ± 6.8 with a mean EPIC-26 SF score of 61.4 ± 30.4. EPIC-26 SF scores steadily decreased to 53.9 ± 30.7 at 24 months (P < 0.01). MAX-PC scores also progressively decreased over time (P = 0.03). Factors associated with lower EPIC-26 scores over time included age, unemployed status, diabetes, coronary artery disease, and hypertension (all P < 0.05). Higher prostate-specific antigen (PSA) was associated with a more rapid decline in EPIC-26 SF over time (P = 0.03). In multivariable analysis, age, diabetes, and PSA × time interaction remained significant predictors of diminished sexual function. Anxiety, number of biopsies, and total cores taken did not predict sexual dysfunction or change over time in our cohort. Conclusions Men on AS experienced a gradual decline in sexual function during the first 24 months of enrollment. Older age, PSA × time, and diabetes were all independent predictors of diminished sexual function over time. Anxiety, AUA-SI, the number of cores and the number of biopsies were not predictors of reduced sexual function in men in AS. PMID:26468379

Feasibility of the Enhancing Participation In the Community by improving Wheelchair Skills (EPIC Wheels) program: study protocol for a randomized controlled trial.

PubMed

Giesbrecht, Edward M; Miller, William C; Eng, Janice J; Mitchell, Ian M; Woodgate, Roberta L; Goldsmith, Charles H

2013-10-24

Many older adults rely on a manual wheelchair for mobility but typically receive little, if any, training on how to use their wheelchair effectively and independently. Standardized skill training is an effective intervention, but limited access to clinician trainers is a substantive barrier. Enhancing Participation in the Community by Improving Wheelchair Skills (EPIC Wheels) is a 1-month monitored home training program for improving mobility skills in older novice manual wheelchair users, integrating principles from andragogy and social cognitive theory. The purpose of this study is to determine whether feasibility indicators and primary clinical outcome measures of the EPIC Wheels program are sufficiently robust to justify conducting a subsequent multi-site randomized controlled trial. A 2 × 2 factorial randomized controlled trial at two sites will compare improvement in wheelchair mobility skills between an EPIC Wheels treatment group and a computer-game control group, with additional wheelchair use introduced as a second factor. A total of 40 community-dwelling manual wheelchair users at least 55 years old and living in two Canadian metropolitan cities (n = 20 × 2) will be recruited. Feasibility indicators related to study process, resources, management, and treatment issues will be collected during data collection and at the end of the study period, and evaluated against proposed criteria. Clinical outcome measures will be collected at baseline (pre-randomization) and post-intervention. The primary clinical outcome measure is wheelchair skill capacity, as determined by the Wheelchair Skills Test, version 4.1. Secondary clinical outcome measures include wheelchair skill safety, satisfaction with performance, wheelchair confidence, life-space mobility, divided-attention, and health-related quality of life. The EPIC Wheels training program offers several innovative features. The convenient, portable, economical, and adaptable tablet-based, home program model for wheelchair skills training has great potential for clinical uptake and opportunity for future enhancements. Theory-driven design can foster learning and adherence for older adults. Establishing the feasibility of the study protocol and estimating effect size for the primary clinical outcome measure will be used to develop a multi-site randomized controlled trial to test the guiding hypotheses. Clinical Trials NCT01740635.

The EPICS-based remote control system for muon beam line devices at J-PARC MUSE

NASA Astrophysics Data System (ADS)

Ito, T. U.; Nakahara, K.; Kawase, M.; Fujimori, H.; Kobayashi, Y.; Higemoto, W.; Miyake, Y.

2010-04-01

The remote control system for muon beam line devices of J-PARC MUSE has been developed with the Experimental Physics and Industrial Control System (EPICS). The EPICS input/output controller was installed in standard Linux PCs for slow control of the devices. Power supplies for 21 magnetic elements and four slit controllers for the decay-surface muon beam line in the Materials and Life Science Experimental Facility are now accessible via Ethernet from a graphical user interface which has been composed using the Motif Editor and Display Manger.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Nawrocki, G.J.; Seaver, C.L.; Kowalkowski, J.B.

As controls needs at the Advanced Photon Source matured from an installation phase to an operational phase, the need to monitor the existing conventional facilities control system with the EPICS-based accelerator control system was realized. This existing conventional facilities control network is based on a proprietary system from Johnson Controls called Metasys. Initially read-only monitoring of the Metasys parameters will be provided; however, the ability for possible future expansion to full control is available. This paper describes a method of using commercially available hardware and existing EPICS software as a bridge between the Metasys and EPICS control systems.

Incorporation of a PbSe Array Based Spectrograph into EPICS using LabView at the JLab FEL Facility

DOE Office of Scientific and Technical Information (OSTI.GOV)

D. Hardy; S.V. Benson; Michelle D. Shinn

2005-08-21

A real-time spectrograph with a 1Hz update rate was designed and installed at the JLab FEL facility using a Cal Sensors PbSe array and a Roper Scientific SpectraPro 300 monochrometer. This paper describes the implementation of EPICS channel access on a remote PC running LabView with modification of vendor supplied LabView VI's to allow display of FEL light spectra in real-time on a remote workstation. This allows PC based diagnostics to be used in EPICS.

Dietary intake of acrylamide and epithelial ovarian cancer risk in the European Prospective Investigation into Cancer and Nutrition (EPIC) cohort

PubMed Central

Obón-Santacana, Mireia; Peeters, Petra H.M.; Freisling, Heinz; Dossus, Laure; Clavel-Chapelon, Françoise; Baglietto, Laura; Schock, Helena; Fortner, Renée T.; Boeing, Heiner; Tjønneland, Anne; Olsen, Anja; Overvad, Kim; Menéndez, Virginia; Sanchez, Maria-José; Larrañaga, Nerea; Castaño, José María Huerta; Barricarte, Aurelio; Khaw, Kay-Tee; Wareham, Nick; Travis, Ruth C.; Merritt, Melissa A.; Trichopoulou, Antonia; Trichopoulos, Dimitrios; Orfanos, Philippos; Masala, Giovanna; Sieri, Sabina; Tumino, Rosario; Vineis, Paolo; Mattiello, Amalia; Bueno-de-Mesquita, H.B.; Onland-Moret, N. Charlotte; Wirfält, Elisabeth; Stocks, Tanja; Idahl, Annika; Lundin, Eva; Skeie, Guri; Gram, Inger T.; Weiderpass, Elisabete; Riboli, Elio; Duell, Eric J

2014-01-01

Acrylamide, classified in 1994 by IARC as ‘probably carcinogenic’ to humans, was discovered in 2002 in some heat-treated, carbohydrate-rich foods. The association between dietary acrylamide intake and epithelial ovarian cancer risk (EOC) has been previously studied in one case-control and three prospective cohort studies which obtained inconsistent results, and could not further examine histological subtypes other than serous EOC. The present study was carried out in the European Prospective Investigation into Cancer and Nutrition (EPIC) sub-cohort of women (n=325,006). Multivariate Cox proportional hazards models were used to assess the association between questionnaire-based acrylamide intake and EOC risk. Acrylamide was energy-adjusted using the residual method, and was evaluated both as a continuous variable (per 10μg/day) and in quintiles; when subgroups by histological EOC subtypes were analyzed, acrylamide intake was evaluated in quartiles. During a mean follow-up of 11 years, 1,191 incident EOC cases were diagnosed. At baseline, the median acrylamide intake in EPIC was 21.3 μg/day. No associations, and no evidence for a dose-response were observed between energy-adjusted acrylamide intake and EOC risk (HR10μg/day:1.02, 95%CI:0.96-1.09; HRQ5vsQ1:0.97, 95%CI:0.76-1.23). No differences were seen when invasive EOC subtypes (582 serous, 118 endometrioid, and 79 mucinous tumors) were analyzed separately. This study did not provide evidence that acrylamide intake, based on food intake questionnaires, was associated with risk for EOC in EPIC. Additional studies with more reliable estimates of exposure based on biomarkers may be needed. PMID:25300475

Work, household, and leisure-time physical activity and risk of mortality in the EPIC-Spain cohort.

PubMed

Huerta, José Ma; Chirlaque, María Dolores; Tormo, María José; Buckland, Genevieve; Ardanaz, Eva; Arriola, Larraitz; Gavrila, Diana; Salmerón, Diego; Cirera, Lluís; Carpe, Bienvenida; Molina-Montes, Esther; Chamosa, Saioa; Travier, Noemie; Quirós, José R; Barricarte, Aurelio; Agudo, Antonio; Sánchez, María José; Navarro, Carmen

2016-04-01

Large-scale longitudinal data on the association of domain-specific physical activity (PA) and mortality is limited. Our objective was to evaluate the association of work, household (HPA), and leisure time PA (LTPA) with overall and cause-specific mortality in the EPIC-Spain study. 38,379 participants (62.4% women), 30-65years old, and free of chronic disease at baseline were followed-up from recruitment (1992 - 1996) to December 31st, 2008 to ascertain vital status and cause of death. PA was evaluated at baseline and at a 3-year follow-up with a validated questionnaire (EPIC-PAQ) and combined variables were used to classify the participants by sub-domains of PA. Associations with overall, cancer, and cardiovascular mortality risks were assessed using competing risk Cox regression models adjusted by potential confounders. After 13.6years of mean follow-up, 1371 deaths were available for analyses. HPA was strongly associated to reduced overall (hazard ratio (HR) for Q4 vs. Q1=0.47 (0.34, 0.64)) and cause-specific mortalities in women and to lower cancer mortality in men (P for trend=0.004), irrespective of age, education, and lifestyle and morbidity variables. LTPA was associated with lower mortality in women (HR for Q4 vs. Q1=0.71 (0.52, 0.98)), but not men. No relationships were found between sedentariness at work and overall mortality. HPA was associated to lower mortality risk in men and women from the EPIC-Spain cohort, whereas LTPA also contributed to reduce risk of death in women. Considering the large proportion of total daily PA that HPA represents in some population groups, these results are of public health importance. Copyright © 2016 Elsevier Inc. All rights reserved.

Investigation of dietary factors and endometrial cancer risk using a nutrient-wide association study approach in the EPIC and Nurses' Health Study (NHS) and NHSII.

PubMed

Merritt, Melissa A; Tzoulaki, Ioanna; Tworoger, Shelley S; De Vivo, Immaculata; Hankinson, Susan E; Fernandes, Judy; Tsilidis, Konstantinos K; Weiderpass, Elisabete; Tjønneland, Anne; Petersen, Kristina E N; Dahm, Christina C; Overvad, Kim; Dossus, Laure; Boutron-Ruault, Marie-Christine; Fagherazzi, Guy; Fortner, Renée T; Kaaks, Rudolf; Aleksandrova, Krasimira; Boeing, Heiner; Trichopoulou, Antonia; Bamia, Christina; Trichopoulos, Dimitrios; Palli, Domenico; Grioni, Sara; Tumino, Rosario; Sacerdote, Carlotta; Mattiello, Amalia; Bueno-de-Mesquita, H Bas; Onland-Moret, N Charlotte; Peeters, Petra H; Gram, Inger T; Skeie, Guri; Quirós, J Ramón; Duell, Eric J; Sánchez, María-José; Salmerón, D; Barricarte, Aurelio; Chamosa, Saioa; Ericson, Ulrica; Sonestedt, Emily; Nilsson, Lena Maria; Idahl, Annika; Khaw, Kay-Tee; Wareham, Nicholas; Travis, Ruth C; Rinaldi, Sabina; Romieu, Isabelle; Patel, Chirag J; Riboli, Elio; Gunter, Marc J

2015-02-01

Data on the role of dietary factors in endometrial cancer development are limited and inconsistent. We applied a "nutrient-wide association study" approach to systematically evaluate dietary risk associations for endometrial cancer while controlling for multiple hypothesis tests using the false discovery rate (FDR) and validating the results in an independent cohort. We evaluated endometrial cancer risk associations for dietary intake of 84 foods and nutrients based on dietary questionnaires in three prospective studies, the European Prospective Investigation into Cancer and Nutrition (EPIC; N = 1,303 cases) followed by validation of nine foods/nutrients (FDR ≤ 0.10) in the Nurses' Health Studies (NHS/NHSII; N = 1,531 cases). Cox regression models were used to estimate HRs and 95% confidence intervals (CI). In multivariate adjusted comparisons of the extreme categories of intake at baseline, coffee was inversely associated with endometrial cancer risk (EPIC, median intake 750 g/day vs. 8.6; HR, 0.81; 95% CI, 0.68-0.97, Ptrend = 0.09; NHS/NHSII, median intake 1067 g/day vs. none; HR, 0.82; 95% CI, 0.70-0.96, Ptrend = 0.04). Eight other dietary factors that were associated with endometrial cancer risk in the EPIC study (total fat, monounsaturated fat, carbohydrates, phosphorus, butter, yogurt, cheese, and potatoes) were not confirmed in the NHS/NHSII. Our findings suggest that coffee intake may be inversely associated with endometrial cancer risk. Further data are needed to confirm these findings and to examine the mechanisms linking coffee intake to endometrial cancer risk to develop improved prevention strategies. ©2015 American Association for Cancer Research.

EPIC'S PRODUCTS AND SERVICES

EPA Science Inventory

EPIC completes approximately 150 site characterizations annually using current and historical aerial photographs. This work is done in support of EPA Regional and Program
offices. Site characterization provides detailed information about a site and its history, often going ba...

Effects of ecological and conventional agricultural intensification practices on maize yields in sub-Saharan Africa under potential climate change

NASA Astrophysics Data System (ADS)

Folberth, Christian; Yang, Hong; Gaiser, Thomas; Liu, Junguo; Wang, Xiuying; Williams, Jimmy; Schulin, Rainer

2014-04-01

Much of Africa is among the world’s regions with lowest yields in staple food crops, and climate change is expected to make it more difficult to catch up in crop production in particular in the long run. Various agronomic measures have been proposed for lifting agricultural production in Africa and to adapt it to climate change. Here, we present a projection of potential climate change impacts on maize yields under different intensification options in Sub-Saharan Africa (SSA) using an agronomic model, GIS-based EPIC (GEPIC). Fallow and nutrient management options taken into account are (a) conventional intensification with high mineral N supply and a bare fallow, (b) moderate mineral N supply and cowpea rotation, and (c) moderate mineral N supply and rotation with a fast growing N fixing tree Sesbania sesban. The simulations suggest that until the 2040s rotation with Sesbania will lead to an increase in yields due to increasing N supply besides improving water infiltration and soils’ water holding capacity. Intensive cultivation with a bare fallow or an herbaceous crop like cowpea in the rotation is predicted to result in lower yields and increased soil erosion during the same time span. However, yields are projected to decrease in all management scenarios towards the end of the century, should temperature increase beyond critical thresholds. The results suggest that the effect of eco-intensification as a sole means of adapting agriculture to climate change is limited in Sub-Saharan Africa. Highly adverse temperatures would rather have to be faced by improved heat tolerant cultivars, while strongly adverse decreases in precipitation would have to be faced by expanding irrigation where feasible. While the evaluation of changes in agro-environmental variables like soil organic carbon, erosion, and soil humidity hints that these are major factors influencing climate change resilience of the field crop, no direct relationship between these factors, crop yields, and changes in climate variables could be identified. This will need further detailed studies at the field and regional scale.

Correlation between μCT imaging, histology and functional capacity of the osteoarthritic knee in the rat model of osteoarthritis.

PubMed

Bagi, Cedo M; Zakur, David E; Berryman, Edwin; Andresen, Catharine J; Wilkie, Dean

2015-08-25

To acquire the most meaningful understanding of human arthritis, it is essential to select the disease model and methodology translatable to human conditions. The primary objective of this study was to evaluate a number of analytic techniques and biomarkers for their ability to accurately gauge bone and cartilage morphology and metabolism in the medial meniscal tear (MMT) model of osteoarthritis (OA). MMT surgery was performed in rats to induce OA. A dynamic weight bearing system (DWB) system was deployed to evaluate the weight-bearing capacity of the front and hind legs in rats. At the end of a 10-week study cartilage pathology was evaluated by micro computed tomography (μCT), contrast enhanced μCT (EPIC μCT) imaging and traditional histology. Bone tissue was evaluated at the tibial metaphysis and epiphysis, including the subchondral bone. Histological techniques and dynamic histomorphometry were used to evaluate cartilage morphology and bone mineralization. The study results showed a negative impact of MMT surgery on the weight-bearing capacity of the operated limb. Surgery caused severe and extensive deterioration of the articular cartilage at the medial tibial plateau, as evidenced by elevated CTX-II in serum, EPIC μCT and histology. Bone analysis by μCT showed thickening of the subchondral bone beneath the damaged cartilage, loss of cancellous bone at the metaphysis and active osteophyte formation. The study emphasizes the need for using various methodologies that complement each other to provide a comprehensive understanding of the pathophysiology of OA at the organ, tissue and cellular levels. Results from this study suggest that use of histology, μCT and EPIC μCT, and functional DWB tests provide powerful combination to fully assess the key aspects of OA and enhance data interpretation.

Circulating 25-hydroxyvitamin D3 in relation to renal cell carcinoma incidence and survival in the EPIC cohort.

PubMed

Muller, David C; Fanidi, Anouar; Midttun, Øivind; Steffen, Annika; Dossus, Laure; Boutron-Ruault, Marie-Christine; Severi, Gianluca; Kühn, Tilman; Katzke, Verena; de la Torre, Ramón Alonso; González, Carlos A; Sánchez, María-José; Dorronsoro, Miren; Santiuste, Carmen; Barricarte, Aurelio; Khaw, Kay-Tee; Wareham, Nick; Travis, Ruth C; Trichopoulou, Antonia; Giotaki, Maria; Trichopoulos, Dimitrios; Palli, Domenico; Krogh, Vittorio; Tumino, Rosario; Vineis, Paolo; Panico, Salvatore; Tjønneland, Anne; Olsen, Anja; Bueno-de-Mesquita, H Bas; Peeters, Petra H; Ljungberg, Börje; Wennberg, Maria; Weiderpass, Elisabete; Murphy, Neil; Riboli, Elio; Ueland, Per Magne; Boeing, Heiner; Brennan, Paul; Johansson, Mattias

2014-10-15

Normal renal function is essential for vitamin D metabolism, but it is unclear whether circulating vitamin D is associated with risk of renal cell carcinoma (RCC). We assessed whether 25-hydroxyvitamin D3 (25(OH)D3) was associated with risk of RCC and death after RCC diagnosis in the European Prospective Investigation into Cancer and Nutrition (EPIC). EPIC recruited 385,747 participants with blood samples between 1992 and 2000. The current study included 560 RCC cases, 557 individually matched controls, and 553 additional controls. Circulating 25(OH)D3 was assessed by mass spectrometry. Conditional and unconditional logistic regression models were used to calculate odds ratios and 95% confidence intervals. Death after RCC diagnosis was assessed using Cox proportional hazards models and flexible parametric survival models. A doubling of 25(OH)D3 was associated with 28% lower odds of RCC after adjustment for season of and age at blood collection, sex, and country of recruitment (odds ratio = 0.72, 95% confidence interval: 0.60, 0.86; P = 0.0004). This estimate was attenuated somewhat after additional adjustment for smoking status at baseline, circulating cotinine, body mass index (weight (kg)/height (m)(2)), and alcohol intake (odds ratio = 0.82, 95% confidence interval: 0.68, 0.99; P = 0.038). There was also some indication that both low and high 25(OH)D3 levels were associated with higher risk of death from any cause among RCC cases. © The Author 2014. Published by Oxford University Press on behalf of the Johns Hopkins Bloomberg School of Public Health. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Spectral and Temporal Characteristics of LS PEG and TW PIC Using XMM-NEWTON Data

NASA Astrophysics Data System (ADS)

Talebpour Sheshvan, Nasrin; Balman, Solen

2016-07-01

We report the analysis of archival XMM-Newton X-ray observations of LS Peg and TW Pic. These are Cataclysmic Variables (CVs) suggested as Intermediate Polars (IPs), but unconfirmed in the X-rays. Identification of several periodic oscillations in the optical band hint them as IPs. Unlike the previous spectral analysis on the EPIC-MOS data by fitting a hot optically thin plasma emission model with a single temperature for LS Peg, we simultaneously fitted all EPIC spectrum (pn+MOS) using a composite model of absorption for interstellar medium (tbabs) with two different partial covering absorbers (pcfabs) including a multitemperature plasma emission component (cevmkl) and a Gaussian emission line at 6.4 keV. TW Pic is best modeled in a similar manner with only one partial covering absorber and an extra Gaussian emission line at 6.7 keV. LS Peg has a maximum plasma temperature of ˜14.8 keV with an X-ray luminosity of ˜5×10^{32}ergs ^{-1} translating to an accretion rate of ˜1.27×10^{-10}M _{⊙}yr ^{-1}. TW Pic shows kT _{max} ˜38.7 keV with an X-ray luminosity around 1.6×10^{33}ergs ^{-1} at an accretion rate of ˜4×10^{-10}M _{⊙}yr ^{-1}. In addition, we discuss orbital modulations in the X-rays and power spectral analysis, and derive the EPIC pn spectra for orbital minimum and orbital maximum phases for both sources. We elaborate on the geometry of accretion and absorption in the X-ray emitting regions of both sources with articulation on the magnetic nature.

DSCOVR EPIC L2 Atmospheric Correction (MAIAC) Data Release Announcement

Atmospheric Science Data Center

2018-06-22

... several atmospheric quantities including cloud mask and aerosol optical depth (AOD) required for atmospheric correction. The parameters ... is a useful complementary dataset to MODIS and VIIRS global aerosol products.   Information about the DSCOVR EPIC Atmospheric ...

Spatially-explicit estimates of greenhouse-gas payback times for perennial cellulosic biomass production on open lands in the Lake States

NASA Astrophysics Data System (ADS)

Sahajpal, R.

2015-12-01

The development of renewable energy sources is an integral step towards mitigating the carbon dioxide induced component of climate change. One important renewable source is plant biomass, comprising both food crops such as corn (Zea mays) and cellulosic biomass from short-rotation woody crops (SRWC) such as hybrid-poplar (Populus spp.) and Willow (Salix spp.). Due to their market acceptability and excellent energy balance, cellulosic feedstocks represent an abundant and if managed properly, a carbon-neutral and environmentally beneficial resource. We evaluate how site variability impacts the greenhouse-gas (GHG) benefits of SRWC plantations on lands potentially suited for bioenergy feedstock production in the Lake States (Minnesota, Wisconsin, Michigan). We combine high-resolution, spatially-explicit estimates of biomass, soil organic carbon and nitrous oxide emissions for SRWC plantations from the Environmental Policy Integrated Climate (EPIC) model along with life cycle analysis results from the GREET model to determine the greenhouse-gas payback time (GPBT) or the time needed before the GHG savings due to displacement of fossil fuels exceeds the initial losses from plantation establishment. We calibrate our models using unique yield and N2O emission data from sites across the Lake states that have been converted from pasture and hayfields to SRWC plantations. Our results show a reduction of 800,000 ha in non-agricultural open land availability for biomass production, a loss of nearly 37% (see attached figure). Overall, GPBTs range between 1 and 38 years, with the longest GPBTs occurring in the northern Lake states. Initial soil nitrate levels and site drainage potential explain more than half of the variation in GPBTs. Our results indicate a rapidly closing window of opportunity to establish a sustainable cellulosic feedstock economy in the Lake States.

Compact representation of continuous energy surfaces for more efficient protein design

PubMed Central

Hallen, Mark A.; Gainza, Pablo; Donald, Bruce R.

2015-01-01

In macromolecular design, conformational energies are sensitive to small changes in atom coordinates, so modeling the small, continuous motions of atoms around low-energy wells confers a substantial advantage in structural accuracy; however, modeling these motions comes at the cost of a very large number of energy function calls, which form the bottleneck in the design calculation. In this work, we remove this bottleneck by consolidating all conformational energy evaluations into the precomputation of a local polynomial expansion of the energy about the “ideal” conformation for each low-energy, “rotameric” state of each residue pair. This expansion is called Energy as Polynomials in Internal Coordinates (EPIC), where the internal coordinates can be sidechain dihedrals, backrub angles, and/or any other continuous degrees of freedom of a macromolecule, and any energy function can be used without adding any asymptotic complexity to the design. We demonstrate that EPIC efficiently represents the energy surface for both molecular-mechanics and quantum-mechanical energy functions, and apply it specifically to protein design to model both sidechain and backbone degrees of freedom. PMID:26089744

Venus EPIC Model Spinup Results

NASA Astrophysics Data System (ADS)

Dowling, Timothy E.; Herrnstein, A.

2006-09-01

We describe the new Venus EPIC model, including its hybrid isentropic/terrain-following vertical coordinate, and explore how topography affects atmospheric spinup from rest. We force the model with the Newtonian cooling used by Lee, Lewis, and Read (2005, Adv. Space Res. 36, 2142-2145) to generate a substantial superrotation in a Venus model without topography, achieving approximately half the desired wind speed. With topography, the Eliassen-Palm flux divergence, a diagnostic tool that maps where eddies have a net effect on the zonal wind, is more steady in time and strongly enhanced at high latitudes in the northern hemisphere by the presence of Ishtar Terra, compared to the case of no topography. In general, the mountains cause the model to achieve a dynamical steady state in a matter of years rather than decades, the northern polar jet to be weaker than its southern counterpart, and the overall magnitude of superrotation to be weaker. Since adding mountains has moved the model superrotation farther below the target, the next step will be to employ more realistic forcing, with attention paid to exactly how the mountains shape the eddy structure, which in turn drives the model's superrotation. This research is funded by the NSF Planetary Astronomy Program and the NASA Planetary Atmospheres Program.

DSCOVR_EPIC_L2_SO2_01

Atmospheric Science Data Center

2018-06-18

... UV and infrared sensors, offering ample opportunities for data intercomparisons and for demonstrating advanced retrievals of volcanic ash ... developed for TOMS and OMI to enable SO2 and Ash Index (AI) products from EPIC UV observations to demonstrate improved estimates of ...

ORAL PRESENTATION:EPA'S ENVIRONMENTAL PHOTOGRAPHIC INTERPRETATION CENTER (EPIC)

EPA Science Inventory

This presentation provides an overview of the remote sensing technical support and research and development activities of the Environmental Photographic Interprettion Center (EPIC). It is the basis for a presentation given at the EPA's Office of Acquisition Management's Annual C...

Object Toolkit Version 4.3 User’s Manual

DTIC Science & Technology

2016-12-31

unlimited. (OPS-17-12855 dtd 19 Jan 2017) 13. SUPPLEMENTARY NOTES 14. ABSTRACT Object Toolkit is a finite - element model builder specifically designed for...INTRODUCTION 1 What Is Object Toolkit? Object Toolkit is a finite - element model builder specifically designed for creating representations of spacecraft...Nascap-2k and EPIC, the user is not required to purchase or learn expensive finite element generators to create system models. Second, Object Toolkit

Neutron Source Facility Training Simulator Based on EPICS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Park, Young Soo; Wei, Thomas Y.; Vilim, Richard B.

A plant operator training simulator is developed for training the plant operators as well as for design verification of plant control system (PCS) and plant protection system (PPS) for the Kharkov Institute of Physics and Technology Neutron Source Facility. The simulator provides the operator interface for the whole plant including the sub-critical assembly coolant loop, target coolant loop, secondary coolant loop, and other facility systems. The operator interface is implemented based on Experimental Physics and Industrial Control System (EPICS), which is a comprehensive software development platform for distributed control systems. Since its development at Argonne National Laboratory, it has beenmore » widely adopted in the experimental physics community, e.g. for control of accelerator facilities. This work is the first implementation for a nuclear facility. The main parts of the operator interface are the plant control panel and plant protection panel. The development involved implementation of process variable database, sequence logic, and graphical user interface (GUI) for the PCS and PPS utilizing EPICS and related software tools, e.g. sequencer for sequence logic, and control system studio (CSS-BOY) for graphical use interface. For functional verification of the PCS and PPS, a plant model is interfaced, which is a physics-based model of the facility coolant loops implemented as a numerical computer code. The training simulator is tested and demonstrated its effectiveness in various plant operation sequences, e.g. start-up, shut-down, maintenance, and refueling. It was also tested for verification of the plant protection system under various trip conditions.« less

Consumption of added fats and oils in the European Prospective Investigation into Cancer and Nutrition (EPIC) centres across 10 European countries as assessed by 24-hour dietary recalls.

PubMed

Linseisen, J; Bergström, E; Gafá, L; González, C A; Thiébaut, A; Trichopoulou, A; Tumino, R; Navarro Sánchez, C; Martínez Garcia, C; Mattisson, I; Nilsson, S; Welch, A; Spencer, E A; Overvad, K; Tjønneland, A; Clavel-Chapelon, F; Kesse, E; Miller, A B; Schulz, M; Botsi, K; Naska, A; Sieri, S; Sacerdote, C; Ocké, M C; Peeters, P H M; Skeie, G; Engeset, D; Charrondière, U R; Slimani, N

2002-12-01

To evaluate the consumption of added fats and oils across the European centres and countries participating in the European Prospective Investigation into Cancer and Nutrition (EPIC). 24-Hour dietary recalls were collected by means of standardised computer-guided interviews in 27 redefined EPIC centres across 10 European countries. From an initial number of 36 900 subjects, single dietary recalls from 22 924 women and 13 031 men in the age range of 35-74 years were included. Mean daily intake of added fats and oils varied between 16.2 g (Varese, Italy) and 41.1 g (Malmö, Sweden) in women and between 24.7 g (Ragusa, Italy) and 66.0 g (Potsdam, Germany) in men. Total mean lipid intake by consumption of added fats and oils, including those used for sauce preparation, ranged between 18.3 (Norway) and 37.2 g day-1 (Greece) in women and 28.4 (Heidelberg, Germany) and 51.2 g day-1 (Greece) in men. The Mediterranean EPIC centres with high olive oil consumption combined with low animal fat intake contrasted with the central and northern European centres where fewer vegetable oils, more animal fats and a high proportion of margarine were consumed. The consumption of added fats and oils of animal origin was highest in the German EPIC centres, followed by the French. The contribution of added fats and oils to total energy intake ranged from 8% in Norway to 22% in Greece. The results demonstrate a high variation in dietary intake of added fats and oils in EPIC, providing a good opportunity to elucidate the role of dietary fats in cancer aetiology.

Using statistical anomaly detection models to find clinical decision support malfunctions.

PubMed

Ray, Soumi; McEvoy, Dustin S; Aaron, Skye; Hickman, Thu-Trang; Wright, Adam

2018-05-11

Malfunctions in Clinical Decision Support (CDS) systems occur due to a multitude of reasons, and often go unnoticed, leading to potentially poor outcomes. Our goal was to identify malfunctions within CDS systems. We evaluated 6 anomaly detection models: (1) Poisson Changepoint Model, (2) Autoregressive Integrated Moving Average (ARIMA) Model, (3) Hierarchical Divisive Changepoint (HDC) Model, (4) Bayesian Changepoint Model, (5) Seasonal Hybrid Extreme Studentized Deviate (SHESD) Model, and (6) E-Divisive with Median (EDM) Model and characterized their ability to find known anomalies. We analyzed 4 CDS alerts with known malfunctions from the Longitudinal Medical Record (LMR) and Epic® (Epic Systems Corporation, Madison, WI, USA) at Brigham and Women's Hospital, Boston, MA. The 4 rules recommend lead testing in children, aspirin therapy in patients with coronary artery disease, pneumococcal vaccination in immunocompromised adults and thyroid testing in patients taking amiodarone. Poisson changepoint, ARIMA, HDC, Bayesian changepoint and the SHESD model were able to detect anomalies in an alert for lead screening in children and in an alert for pneumococcal conjugate vaccine in immunocompromised adults. EDM was able to detect anomalies in an alert for monitoring thyroid function in patients on amiodarone. Malfunctions/anomalies occur frequently in CDS alert systems. It is important to be able to detect such anomalies promptly. Anomaly detection models are useful tools to aid such detections.

Doing accelerator physics using SDDS, UNIX, and EPICS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Borland, M.; Emery, L.; Sereno, N.

1995-12-31

The use of the SDDS (Self-Describing Data Sets) file protocol, together with the UNIX operating system and EPICS (Experimental Physics and Industrial Controls System), has proved powerful during the commissioning of the APS (Advanced Photon Source) accelerator complex. The SDDS file protocol has permitted a tool-oriented approach to developing applications, wherein generic programs axe written that function as part of multiple applications. While EPICS-specific tools were written for data collection, automated experiment execution, closed-loop control, and so forth, data processing and display axe done with the SDDS Toolkit. Experiments and data reduction axe implemented as UNIX shell scripts that coordinatemore » the execution of EPICS specific tools and SDDS tools. Because of the power and generic nature of the individual tools and of the UNIX shell environment, automated experiments can be prepared and executed rapidly in response to unanticipated needs or new ideas. Examples are given of application of this methodology to beam motion characterization, beam-position-monitor offset measurements, and klystron characterization.« less

Developing Exon-Primed Intron-Crossing (EPIC) markers for population genetic studies in three Aedes disease vectors.

PubMed

White, Vanessa Linley; Endersby, Nancy Margaret; Chan, Janice; Hoffmann, Ary Anthony; Weeks, Andrew Raymond

2015-03-01

Aedes aegypti, Aedes notoscriptus, and Aedes albopictus are important vectors of many arboviruses implicated in human disease such as dengue fever. Genetic markers applied across vector species can provide important information on population structure, gene flow, insecticide resistance, and taxonomy, however, robust microsatellite markers have proven difficult to develop in these species and mosquitoes generally. Here we consider the utility and transferability of 15 Ribosome protein (Rp) Exon-Primed Intron-Crossing (EPIC) markers for population genetic studies in these 3 Aedes species. Rp EPIC markers designed for Ae. aegypti also successfully amplified populations of the sister species, Ae. albopictus, as well as the distantly related species, Ae. notoscriptus. High SNP and good indel diversity in sequenced alleles plus support for amplification of the same regions across populations and species were additional benefits of these markers. These findings point to the general value of EPIC markers in mosquito population studies. © 2014 Institute of Zoology, Chinese Academy of Sciences.

Control system renewal for efficient operation in RIKEN 18 GHz electron cyclotron resonance ion source

DOE Office of Scientific and Technical Information (OSTI.GOV)

Uchiyama, A., E-mail: a-uchi@riken.jp; Ozeki, K.; Higurashi, Y.

A RIKEN 18 GHz electron cyclotron resonance ion source (18 GHz ECRIS) is used as an external ion source at the Radioactive Ion Beam Factory (RIBF) accelerator complex to produce an intense beam of medium-mass heavy ions (e.g., Ca and Ar). In most components that comprise the RIBF, the control systems (CSs) are integrated by the Experimental Physics and Industrial Control System (EPICS). On the other hand, a non-EPICS-based system has hardwired controllers, and it is used in the 18 GHz ECRIS CS as an independent system. In terms of efficient and effective operation, the 18 GHz ECRIS CS asmore » well as the RIBF CS should be renewed using EPICS. Therefore, we constructed an 18 GHz ECRIS CS by using programmable logic controllers with embedded EPICS technology. In the renewed system, an operational log system was developed as a new feature, for supporting of the 18 GHz ECRIS operation.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Veseli, S.

As the number of sites deploying and adopting EPICS Version 4 grows, so does the need to support PV Access from multiple languages. Especially important are the widely used scripting languages that tend to reduce both software development time and the learning curve for new users. In this paper we describe PvaPy, a Python API for the EPICS PV Access protocol and its accompanying structured data API. Rather than implementing the protocol itself in Python, PvaPy wraps the existing EPICS Version 4 C++ libraries using the Boost.Python framework. This approach allows us to benefit from the existing code base andmore » functionality, and to significantly reduce the Python API development effort. PvaPy objects are based on Python dictionaries and provide users with the ability to access even the most complex of PV Data structures in a relatively straightforward way. Its interfaces are easy to use, and include support for advanced EPICS Version 4 features such as implementation of client and server Remote Procedure Calls (RPC).« less

Validation of the Eating Pattern Inventory for Children in a General Population Sample of 11- to 12-Year-Old Children.

PubMed

Munkholm, Anja; Bjorner, Jakob B; Petersen, Janne; Micali, Nadia; Olsen, Else Marie; Skovgaard, Anne Mette

2017-09-01

Previous research suggests that the Eating Pattern Inventory for Children (EPI-C) is best conceptualized as comprising four factors: dietary restraint, emotional, external eating and parental pressure to eat. This study aims to examine the psychometric properties of the EPI-C and to test gender and weight group differences. The population-based study sample comprised 1,939 children aged 11 to 12 years from the Copenhagen Child Cohort (CCC2000). Psychometric properties were evaluated using multigroup categorical data in confirmatory factor analysis (CFA) and differential item functioning (DIF) tests. CFA supported the four-factor solution for the EPI-C. Reliability estimates were satisfactory for three of the four scales. DIF with regard to weight was found for an item on weight loss intention. Girls reported higher restrained and emotional eating; overweight children reported higher restrained, emotional and external eating, while underweight children reported higher parental pressure to eat. The results support the use of EPI-C for measuring eating behaviors in preadolescence.

XMM-Newton discovery of pulsations from IGR J21237+4218=V2069 Cyg

NASA Astrophysics Data System (ADS)

de Martino, D.; Bonnet-Bidaud, J. M.; Falanga, M.; Mouchet, M.; Motch, C.

2009-06-01

We report on a preliminary analysis of a XMM-Newton observation of the INTEGRAL source IGR J21237+4218 identified as the cataclysmic variable RXJ2123.7+4217=V2069 Cyg (Motch et al. 1996 A&A 307, 459; Barlow et al. 2006, MNRAS 372, 224). This observation was performed on April 30, 2009 (Start time: 2009-04-30T10:45:58.000) for a total of 28ksec (Observation ID: 0601270101). The source is detected in the EPIC cameras at an average net countrate of 1.05 cts/sec (EPIC-pn) and 0.65cts/sec (EPIC-MOS).

Reflections on the Epic Challenge, 1989

ERIC Educational Resources Information Center

Meiers, Marion

2013-01-01

In this article, Marion Meiers reflects on the often-cited address "Literacy: The Epic Challenge Beyond Progressivism" by Garth Boomer at the 1989 joint National Conference of the Australian Reading Association (now the Australian Literacy Educator's Association) and the Australian Association for the Teaching of English at Darin High…

Exploring Lyric, Epic, and Dramatic Voices: Stages of Incandescence in the Poetry of the Aged.

ERIC Educational Resources Information Center

Reed, M. Ann

1992-01-01

Identifies true relationships between the psyche and the lyric, epic, and dramatic voices of poetry. Shows how the acts of identifying, responding to, and composing in these three voices engage healing, inspiration, and active imagination among the aging. (SR)

EPICS as a MARTe Configuration Environment

NASA Astrophysics Data System (ADS)

Valcarcel, Daniel F.; Barbalace, Antonio; Neto, André; Duarte, André S.; Alves, Diogo; Carvalho, Bernardo B.; Carvalho, Pedro J.; Sousa, Jorge; Fernandes, Horácio; Goncalves, Bruno; Sartori, Filippo; Manduchi, Gabriele

2011-08-01

The Multithreaded Application Real-Time executor (MARTe) software provides an environment for the hard real-time execution of codes while leveraging a standardized algorithm development process. The Experimental Physics and Industrial Control System (EPICS) software allows the deployment and remote monitoring of networked control systems. Channel Access (CA) is the protocol that enables the communication between EPICS distributed components. It allows to set and monitor process variables across the network belonging to different systems. The COntrol and Data Acquisition and Communication (CODAC) system for the ITER Tokamak will be EPICS based and will be used to monitor and live configure the plant controllers. The reconfiguration capability in a hard real-time system requires strict latencies from the request to the actuation and it is a key element in the design of the distributed control algorithm. Presently, MARTe and its objects are configured using a well-defined structured language. After each configuration, all objects are destroyed and the system rebuilt, following the strong hard real-time rule that a real-time system in online mode must behave in a strictly deterministic fashion. This paper presents the design and considerations to use MARTe as a plant controller and enable it to be EPICS monitorable and configurable without disturbing the execution at any time, in particular during a plasma discharge. The solutions designed for this will be presented and discussed.

Performance Comparison of EPICS IOC and MARTe in a Hard Real-Time Control Application

NASA Astrophysics Data System (ADS)

Barbalace, Antonio; Manduchi, Gabriele; Neto, A.; De Tommasi, G.; Sartori, F.; Valcarcel, D. F.

2011-12-01

EPICS is used worldwide mostly for controlling accelerators and large experimental physics facilities. Although EPICS is well fit for the design and development of automation systems, which are typically VME or PLC-based systems, and for soft real-time systems, it may present several drawbacks when used to develop hard real-time systems/applications especially when general purpose operating systems as plain Linux are chosen. This is in particular true in fusion research devices typically employing several hard real-time systems, such as the magnetic control systems, that may require strict determinism, and high performance in terms of jitter and latency. Serious deterioration of important plasma parameters may happen otherwise, possibly leading to an abrupt termination of the plasma discharge. The MARTe framework has been recently developed to fulfill the demanding requirements for such real-time systems that are alike to run on general purpose operating systems, possibly integrated with the low-latency real-time preemption patches. MARTe has been adopted to develop a number of real-time systems in different Tokamaks. In this paper, we first summarize differences and similarities between EPICS IOC and MARTe. Then we report on a set of performance measurements executed on an x86 64 bit multicore machine running Linux with an IO control algorithm implemented in an EPICS IOC and in MARTe.

STAR Online Meta-Data Collection Framework: Integration with the Pre-existing Controls Infrastructure

NASA Astrophysics Data System (ADS)

Arkhipkin, D.; Lauret, J.

2017-10-01

One of the STAR experiment’s modular Messaging Interface and Reliable Architecture framework (MIRA) integration goals is to provide seamless and automatic connections with the existing control systems. After an initial proof of concept and operation of the MIRA system as a parallel data collection system for online use and real-time monitoring, the STAR Software and Computing group is now working on the integration of Experimental Physics and Industrial Control System (EPICS) with MIRA’s interfaces. This integration goals are to allow functional interoperability and, later on, to replace the existing/legacy Detector Control System components at the service level. In this report, we describe the evolutionary integration process and, as an example, will discuss the EPICS Alarm Handler conversion. We review the complete upgrade procedure starting with the integration of EPICS-originated alarm signals propagation into MIRA, followed by the replacement of the existing operator interface based on Motif Editor and Display Manager (MEDM) with modern portable web-based Alarm Handler interface. To achieve this aim, we have built an EPICS-to-MQTT [8] bridging service, and recreated the functionality of the original Alarm Handler using low-latency web messaging technologies. The integration of EPICS alarm handling into our messaging framework allowed STAR to improve the DCS alarm awareness of existing STAR DAQ and RTS services, which use MIRA as a primary source of experiment control information.

A multilevel model to estimate the within- and the between-center components of the exposure/disease association in the EPIC study.

PubMed

Sera, Francesco; Ferrari, Pietro

2015-01-01

In a multicenter study, the overall relationship between exposure and the risk of cancer can be broken down into a within-center component, which reflects the individual level association, and a between-center relationship, which captures the association at the aggregate level. A piecewise exponential proportional hazards model with random effects was used to evaluate the association between dietary fiber intake and colorectal cancer (CRC) risk in the EPIC study. During an average follow-up of 11.0 years, 4,517 CRC events occurred among study participants recruited in 28 centers from ten European countries. Models were adjusted by relevant confounding factors. Heterogeneity among centers was modelled with random effects. Linear regression calibration was used to account for errors in dietary questionnaire (DQ) measurements. Risk ratio estimates for a 10 g/day increment in dietary fiber were equal to 0.90 (95%CI: 0.85, 0.96) and 0.85 (0.64, 1.14), at the individual and aggregate levels, respectively, while calibrated estimates were 0.85 (0.76, 0.94), and 0.87 (0.65, 1.15), respectively. In multicenter studies, over a straightforward ecological analysis, random effects models allow information at the individual and ecologic levels to be captured, while controlling for confounding at both levels of evidence.

Feasibility of the Enhancing Participation In the Community by improving Wheelchair Skills (EPIC Wheels) program: study protocol for a randomized controlled trial

PubMed Central

2013-01-01

Background Many older adults rely on a manual wheelchair for mobility but typically receive little, if any, training on how to use their wheelchair effectively and independently. Standardized skill training is an effective intervention, but limited access to clinician trainers is a substantive barrier. Enhancing Participation in the Community by Improving Wheelchair Skills (EPIC Wheels) is a 1-month monitored home training program for improving mobility skills in older novice manual wheelchair users, integrating principles from andragogy and social cognitive theory. The purpose of this study is to determine whether feasibility indicators and primary clinical outcome measures of the EPIC Wheels program are sufficiently robust to justify conducting a subsequent multi-site randomized controlled trial. Methods A 2 × 2 factorial randomized controlled trial at two sites will compare improvement in wheelchair mobility skills between an EPIC Wheels treatment group and a computer-game control group, with additional wheelchair use introduced as a second factor. A total of 40 community-dwelling manual wheelchair users at least 55 years old and living in two Canadian metropolitan cities (n = 20 × 2) will be recruited. Feasibility indicators related to study process, resources, management, and treatment issues will be collected during data collection and at the end of the study period, and evaluated against proposed criteria. Clinical outcome measures will be collected at baseline (pre-randomization) and post-intervention. The primary clinical outcome measure is wheelchair skill capacity, as determined by the Wheelchair Skills Test, version 4.1. Secondary clinical outcome measures include wheelchair skill safety, satisfaction with performance, wheelchair confidence, life-space mobility, divided-attention, and health-related quality of life. Discussion The EPIC Wheels training program offers several innovative features. The convenient, portable, economical, and adaptable tablet-based, home program model for wheelchair skills training has great potential for clinical uptake and opportunity for future enhancements. Theory-driven design can foster learning and adherence for older adults. Establishing the feasibility of the study protocol and estimating effect size for the primary clinical outcome measure will be used to develop a multi-site randomized controlled trial to test the guiding hypotheses. Trial registration Clinical Trials NCT01740635. PMID:24156396

Mechanistic modeling of reactive soil nitrogen emissions across agricultural management practices

NASA Astrophysics Data System (ADS)

Rasool, Q. Z.; Miller, D. J.; Bash, J. O.; Venterea, R. T.; Cooter, E. J.; Hastings, M. G.; Cohan, D. S.

2017-12-01

The global reactive nitrogen (N) budget has increased by a factor of 2-3 from pre-industrial levels. This increase is especially pronounced in highly N fertilized agricultural regions in summer. The reactive N emissions from soil to atmosphere can be in reduced (NH3) or oxidized (NO, HONO, N2O) forms, depending on complex biogeochemical transformations of soil N reservoirs. Air quality models like CMAQ typically neglect soil emissions of HONO and N2O. Previously, soil NO emissions estimated by models like CMAQ remained parametric and inconsistent with soil NH3 emissions. Thus, there is a need to more mechanistically and consistently represent the soil N processes that lead to reactive N emissions to the atmosphere. Our updated approach estimates soil NO, HONO and N2O emissions by incorporating detailed agricultural fertilizer inputs from EPIC, and CMAQ-modeled N deposition, into the soil N pool. EPIC addresses the nitrification, denitrification and volatilization rates along with soil N pools for agricultural soils. Suitable updates to account for factors like nitrite (NO2-) accumulation not addressed in EPIC, will also be made. The NO and N2O emissions from nitrification and denitrification are computed mechanistically using the N sub-model of DAYCENT. These mechanistic definitions use soil water content, temperature, NH4+ and NO3- concentrations, gas diffusivity and labile C availability as dependent parameters at various soil layers. Soil HONO emissions found to be most probable under high NO2- availability will be based on observed ratios of HONO to NO emissions under different soil moistures, pH and soil types. The updated scheme will utilize field-specific soil properties and N inputs across differing manure management practices such as tillage. Comparison of the modeled soil NO emission rates from the new mechanistic and existing schemes against field measurements will be discussed. Our updated framework will help to predict the diurnal and daily variability of different reactive N emissions (NO, HONO, N2O) with soil temperature, moisture and N inputs.

Burbank works on the EPIC in the Node 2

NASA Image and Video Library

2012-02-28

ISS030-E-114433 (29 Feb. 2012) --- In the International Space Station?s Destiny laboratory, NASA astronaut Dan Burbank, Expedition 30 commander, upgrades Multiplexer/Demultiplexer (MDM) computers and Portable Computer System (PCS) laptops and installs the Enhanced Processor & Integrated Communications (EPIC) hardware in the Payload 1 (PL-1) MDM.

DIGITAL IMAGE ANALYSIS REPORTS: THE CONVERSION OF EPIC'S TRADITIONAL SITE CHARACTERIZATION PRODUCT

EPA Science Inventory

Over the past several years EPIC has been exploring the practicality and cost-effectiveness of providing its traditional hard-copy report product in digital form. This conversion has a number of practical uses including- 1) compatibility for use as data layers in a GIS; 2) transp...

Cloud Nine: A Work of Agitprop

ERIC Educational Resources Information Center

Safak, Zafer

2014-01-01

Epic theater, which is formed by Bertolt Brecht in the early 20th century and peaks in the following decades, challenges the persistent drama convention initiated first by Aristotle. Bertolt Brecht, who is propelled by Marxist convictions and dialectical conception of history while shaping his epic theatre, aims to expose social degradation,…

Outdoor Adventure Programs Fulfilling Heroic Archetypal Patterns.

ERIC Educational Resources Information Center

Lee, Johnny

The experiences found in adventure programs often parallel the archetypes depicted in mythological quests. Drawing on the work of Joseph Campbell, the stages and trials of adventure participants are compared to similar rites of passage and epic adventures experienced by heroes and heroines in epic literature and mythology. The basic pattern of…

2011 Annual Report: Maine Course Pathways Project

ERIC Educational Resources Information Center

Educational Policy Improvement Center (NJ1), 2011

2011-01-01

The Educational Policy Improvement Center (EPIC), a 501(c)3 nonprofit organization, seeks to help policy makers and policy implementers alike do a better job of using educational policy as a tool to improve schooling and student learning. EPIC works with federal agencies, state education departments, non-governmental organizations, private…

Reliability and Validity of the Evidence-Based Practice Confidence (EPIC) Scale

ERIC Educational Resources Information Center

Salbach, Nancy M.; Jaglal, Susan B.; Williams, Jack I.

2013-01-01

Introduction: The reliability, minimal detectable change (MDC), and construct validity of the evidence-based practice confidence (EPIC) scale were evaluated among physical therapists (PTs) in clinical practice. Methods: A longitudinal mail survey was conducted. Internal consistency and test-retest reliability were estimated using Cronbach's alpha…

Cross platform development using Delphi and Kylix

DOE Office of Scientific and Technical Information (OSTI.GOV)

McDonald, J.L.; Nishimura, H.; Timossi, C.

2002-10-08

A cross platform component for EPICS Simple Channel Access (SCA) has been developed for the use with Delphi on Windows and Kylix on Linux. An EPICS controls GUI application developed on Windows runs on Linux by simply rebuilding it, and vice versa. This paper describes the technical details of the component.

Transiting exoplanet candidates from K2 Campaigns 5 and 6

NASA Astrophysics Data System (ADS)

Pope, Benjamin J. S.; Parviainen, Hannu; Aigrain, Suzanne

2016-10-01

We introduce a new transit search and vetting pipeline for observations from the K2 mission, and present the candidate transiting planets identified by this pipeline out of the targets in Campaigns 5 and 6. Our pipeline uses the Gaussian process-based K2SC code to correct for the K2 pointing systematics and simultaneously model stellar variability. The systematics-corrected, variability-detrended light curves are searched for transits with the box-least-squares method, and a period-dependent detection threshold is used to generate a preliminary candidate list. Two or three individuals vet each candidate manually to produce the final candidate list, using a set of automatically generated transit fits and assorted diagnostic tests to inform the vetting. We detect 145 single-planet system candidates and 5 multi-planet systems, independently recovering the previously published hot Jupiters EPIC 212110888b, WASP-55b (EPIC 212300977b) and Qatar-2b (EPIC 212756297b). We also report the outcome of reconnaissance spectroscopy carried out for all candidates with Kepler magnitude Kp ≤ 13, identifying 12 targets as likely false positives. We compare our results to those of other K2 transit search pipelines, noting that ours performs particularly well for variable and/or active stars, but that the results are very similar overall. All the light curves and code used in the transit search and vetting process are publicly available, as are the follow-up spectra.

Potential Scientific Output from the Visible Channels of EPIC Spectroradiometer as Part of the DSCOVR L1 Mission

NASA Technical Reports Server (NTRS)

Marshak, Alexander; Herman, Jay

2011-01-01

In addition to 4 UV channels, the EPIC spectroradiometer will provide measurements at 6 visible (and near IR) channels (443,551,680,687.75, 764 and 779.9 nm) at roughly 10 km spatial resolution. The scattering angles are near backscattering and vary between 165 and 176 degree. Two pairs {680 and 687.75 nm} and {764 and 779.9 nm} represent 02 B- and A-bands (and their references) channels; they will be used for cloud height measurements over land and ocean. The B-band channel will contribute to the more absorbing A-band measurements over bright vegetation. A pair {680 and 779.9 nm} will be used for retrieving vegetation properties. Due to the special EPIC geometry, the illuminated part of the leaves will be always observed. As a result, in additional to the traditional Leaf Area Index (LAI), these observations for the first time will provide the sunlit fraction of LAI. Since the sunlit and shaded leaves exhibit different photosynthetic response to incident radiation, these measurements will help to improve global ecological and biogeochemistry models. Finally, a pair {443 and 551 nm} will be used for atmospheric correction. As a by-product of the atmospheric correction algorithm, we also expect to get aerosol optical thickness (AOT) and surface bidirectional reflection function (BRF). The presentation will briefly overview the proposed science algorithms.

Review and analysis of strengths and weaknesses of agro-ecosystem models for simulating C and N fluxes.

PubMed

Brilli, Lorenzo; Bechini, Luca; Bindi, Marco; Carozzi, Marco; Cavalli, Daniele; Conant, Richard; Dorich, Cristopher D; Doro, Luca; Ehrhardt, Fiona; Farina, Roberta; Ferrise, Roberto; Fitton, Nuala; Francaviglia, Rosa; Grace, Peter; Iocola, Ileana; Klumpp, Katja; Léonard, Joël; Martin, Raphaël; Massad, Raia Silvia; Recous, Sylvie; Seddaiu, Giovanna; Sharp, Joanna; Smith, Pete; Smith, Ward N; Soussana, Jean-Francois; Bellocchi, Gianni

2017-11-15

Biogeochemical simulation models are important tools for describing and quantifying the contribution of agricultural systems to C sequestration and GHG source/sink status. The abundance of simulation tools developed over recent decades, however, creates a difficulty because predictions from different models show large variability. Discrepancies between the conclusions of different modelling studies are often ascribed to differences in the physical and biogeochemical processes incorporated in equations of C and N cycles and their interactions. Here we review the literature to determine the state-of-the-art in modelling agricultural (crop and grassland) systems. In order to carry out this study, we selected the range of biogeochemical models used by the CN-MIP consortium of FACCE-JPI (http://www.faccejpi.com): APSIM, CERES-EGC, DayCent, DNDC, DSSAT, EPIC, PaSim, RothC and STICS. In our analysis, these models were assessed for the quality and comprehensiveness of underlying processes related to pedo-climatic conditions and management practices, but also with respect to time and space of application, and for their accuracy in multiple contexts. Overall, it emerged that there is a possible impact of ill-defined pedo-climatic conditions in the unsatisfactory performance of the models (46.2%), followed by limitations in the algorithms simulating the effects of management practices (33.1%). The multiplicity of scales in both time and space is a fundamental feature, which explains the remaining weaknesses (i.e. 20.7%). Innovative aspects have been identified for future development of C and N models. They include the explicit representation of soil microbial biomass to drive soil organic matter turnover, the effect of N shortage on SOM decomposition, the improvements related to the production and consumption of gases and an adequate simulations of gas transport in soil. On these bases, the assessment of trends and gaps in the modelling approaches currently employed to represent biogeochemical cycles in crop and grassland systems appears an essential step for future research. Copyright © 2017 Elsevier B.V. All rights reserved.

Plasma elaidic acid level as biomarker of industrial trans fatty acids and risk of weight change: report from the EPIC study.

PubMed

Chajès, Véronique; Biessy, Carine; Ferrari, Pietro; Romieu, Isabelle; Freisling, Heinz; Huybrechts, Inge; Scalbert, Augustin; Bueno de Mesquita, Bas; Romaguera, Dora; Gunter, Marc J; Vineis, Paolo; Hansen, Camilla Plambeck; Jakobsen, Marianne Uhre; Clavel-Chapelon, Françoise; Fagherazzi, Guy; Boutron-Ruault, Marie-Christine; Katzke, Verana; Neamat-Allah, Jasmine; Boeing, Heiner; Bachlechner, Ursula; Trichopoulou, Antonia; Naska, Androniki; Orfanos, Philippos; Pala, Valeria; Masala, Giovanna; Mattiello, Amalia; Skeie, Guri; Weiderpass, Elisabete; Agudo, Antonio; Huerta, Jose Maria; Ardanaz, Eva; Sánchez, Maria Jose; Dorronsoro, Miren; Quirós, Jose Ramon; Johansson, Ingegerd; Winkvist, Anna; Sonested, Emily; Key, Tim; Khaw, Kay-Tee; Wareham, Nicolas J; Peeters, Petra H M; Slimani, Nadia

2015-01-01

Few epidemiological studies have examined the association between dietary trans fatty acids and weight gain, and the evidence remains inconsistent. The main objective of the study was to investigate the prospective association between biomarker of industrial trans fatty acids and change in weight within the large study European Prospective Investigation into Cancer and Nutrition (EPIC) cohort. Baseline plasma fatty acid concentrations were determined in a representative EPIC sample from the 23 participating EPIC centers. A total of 1,945 individuals were followed for a median of 4.9 years to monitor weight change. The association between elaidic acid level and percent change of weight was investigated using a multinomial logistic regression model, adjusted by length of follow-up, age, energy, alcohol, smoking status, physical activity, and region. In women, doubling elaidic acid was associated with a decreased risk of weight loss (odds ratio (OR) = 0.69, 95% confidence interval (CI) = 0.55-0.88, p = 0.002) and a trend was observed with an increased risk of weight gain during the 5-year follow-up (OR = 1.23, 95% CI = 0.97-1.56, p = 0.082) (p-trend<.0001). In men, a trend was observed for doubling elaidic acid level and risk of weight loss (OR = 0.82, 95% CI = 0.66-1.01, p = 0.062) while no significant association was found with risk of weight gain during the 5-year follow-up (OR = 1.08, 95% CI = 0.88-1.33, p = 0.454). No association was found for saturated and cis-monounsaturated fatty acids. These data suggest that a high intake of industrial trans fatty acids may decrease the risk of weight loss, particularly in women. Prevention of obesity should consider limiting the consumption of highly processed foods, the main source of industrially-produced trans fatty acids.

Plasma Elaidic Acid Level as Biomarker of Industrial Trans Fatty Acids and Risk of Weight Change: Report from the EPIC Study

PubMed Central

Chajès, Véronique; Biessy, Carine; Ferrari, Pietro; Romieu, Isabelle; Freisling, Heinz; Huybrechts, Inge; Scalbert, Augustin; Bueno de Mesquita, Bas; Romaguera, Dora; Gunter, Marc J.; Vineis, Paolo; Hansen, Camilla Plambeck; Jakobsen, Marianne Uhre; Clavel-Chapelon, Françoise; Fagherazzi, Guy; Boutron-Ruault, Marie-Christine; Katzke, Verana; Neamat-Allah, Jasmine; Boeing, Heiner; Bachlechner, Ursula; Trichopoulou, Antonia; Naska, Androniki; Orfanos, Philippos; Pala, Valeria; Masala, Giovanna; Mattiello, Amalia; Skeie, Guri; Weiderpass, Elisabete; Agudo, Antonio; Huerta, Jose Maria; Ardanaz, Eva; Sánchez, Maria Jose; Dorronsoro, Miren; Quirós, Jose Ramon; Johansson, Ingegerd; Winkvist, Anna; Sonested, Emily; Key, Tim; Khaw, Kay-Tee; Wareham, Nicolas J.; Peeters, Petra H.M.; Slimani, Nadia

2015-01-01

Background Few epidemiological studies have examined the association between dietary trans fatty acids and weight gain, and the evidence remains inconsistent. The main objective of the study was to investigate the prospective association between biomarker of industrial trans fatty acids and change in weight within the large study European Prospective Investigation into Cancer and Nutrition (EPIC) cohort. Methods Baseline plasma fatty acid concentrations were determined in a representative EPIC sample from the 23 participating EPIC centers. A total of 1,945 individuals were followed for a median of 4.9 years to monitor weight change. The association between elaidic acid level and percent change of weight was investigated using a multinomial logistic regression model, adjusted by length of follow-up, age, energy, alcohol, smoking status, physical activity, and region. Results In women, doubling elaidic acid was associated with a decreased risk of weight loss (odds ratio (OR) = 0.69, 95% confidence interval (CI) = 0.55-0.88, p = 0.002) and a trend was observed with an increased risk of weight gain during the 5-year follow-up (OR = 1.23, 95% CI = 0.97-1.56, p = 0.082) (p-trend<.0001). In men, a trend was observed for doubling elaidic acid level and risk of weight loss (OR = 0.82, 95% CI = 0.66-1.01, p = 0.062) while no significant association was found with risk of weight gain during the 5-year follow-up (OR = 1.08, 95% CI = 0.88-1.33, p = 0.454). No association was found for saturated and cis-monounsaturated fatty acids. Conclusions These data suggest that a high intake of industrial trans fatty acids may decrease the risk of weight loss, particularly in women. Prevention of obesity should consider limiting the consumption of highly processed foods, the main source of industrially-produced trans fatty acids. PMID:25675445

Associations between flavan-3-ol intake and CVD risk in the Norfolk cohort of the European Prospective Investigation into Cancer (EPIC-Norfolk)

PubMed Central

Vogiatzoglou, Anna; Mulligan, Angela A.; Bhaniani, Amit; Lentjes, Marleen A.H.; McTaggart, Alison; Luben, Robert N.; Heiss, Christian; Kelm, Malte; Merx, Marc W.; Spencer, Jeremy P.E.; Schroeter, Hagen; Khaw, Kay-Tee; Kuhnle, Gunter G.C.

2015-01-01

Dietary intervention studies suggest that flavan-3-ol intake can improve vascular function and reduce the risk of cardiovascular diseases (CVD). However, results from prospective studies failed to show a consistent beneficial effect. Associations between flavan-3-ol intake and CVD risk in the Norfolk arm of the European Prospective Investigation into Cancer and Nutrition (EPIC-Norfolk) were investigated. Data were available from 24,885 (11,252 men; 13,633 women) participants, recruited between 1993 and 1997 into the EPIC-Norfolk study. Flavan-3-ol intake was assessed using 7-day food diaries and the FLAVIOLA Flavanol Food Composition database. Missing data for plasma cholesterol and vitamin C were imputed using multiple imputation. Associations between flavan-3-ol intake and blood pressure at baseline were determined using linear regression models. Associations with CVD risk were estimated using Cox regression analyses. Median intake of total flavan-3-ols was 1034 mg/d (range: 0–8531 mg/d) for men and 970 mg/d (0–6695 mg/d) for women, median intake of flavan-3-ol monomers was 233 mg/d (0–3248 mg/d) for men and 217 (0–2712 mg/d) for women. There were no consistent associations between flavan-3-ol monomer intake and baseline systolic and diastolic blood pressure (BP). After 286,147 person-years of follow-up, there were 8463 cardiovascular events and 1987 CVD related deaths; no consistent association between flavan-3-ol intake and CVD risk (HR 0.93, 95% CI: 0.87; 1.00; Q1 vs Q5) or mortality was observed (HR 0.93, 95% CI: 0.84; 1.04). Flavan-3-ol intake in EPIC-Norfolk is not sufficient to achieve a statistically significant reduction in CVD risk. PMID:25795512

Integrated Transmission and Distribution Co-simulation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Min, L.

2017-02-10

The Energy Commission is currently soliciting ideas and stakeholder input for the 2018 – 2020 EPIC Triennial Investment Plan. For those that would like to submit an idea for consideration in the 2018-2020 EPIC Triennial Plan, we ask that you complete the form below. Submittals are due by 5:00 p.m. on February 10, 2017.

Frequency Responsive Load

DOE Office of Scientific and Technical Information (OSTI.GOV)

Top, P. L.

2017-02-10

The Energy Commission is currently soliciting ideas and stakeholder input for the 2018 – 2020 EPIC Triennial Investment Plan. For those that would like to submit an idea for consideration in the 2018-2020 EPIC Triennial Plan, we ask that you complete the form below. Submittals are due by 5:00 p.m. on February 10, 2017.

Measuring School and Teacher Effectiveness in EPIC Charter School Consortium--Year 2. Final Report

ERIC Educational Resources Information Center

Potamites, Liz; Booker, Kevin; Chaplin, Duncan; Isenberg, Eric

2009-01-01

New Leaders for New Schools, a nonprofit organization committed to training school principals, heads the Effective Practices Incentive Community (EPIC), an initiative that offers financial awards to effective educators. Through this initiative, New Leaders offers financial awards to educators in two urban school districts and a consortium of…

Intake of total omega-3 fatty acids, eicosapentaenoic acid and docosahexaenoic acid and risk of coronary heart disease in the Spanish EPIC cohort study.

PubMed

Amiano, P; Machón, M; Dorronsoro, M; Chirlaque, M Dolores; Barricarte, A; Sánchez, M-J; Navarro, C; Huerta, J M; Molina-Montes, E; Sánchez-Cantalejo, E; Urtizberea, M; Arriola, L; Larrañaga, N; Ardanaz, E; Quirós, J R; Moreno-Iribas, C; González, C A

2014-03-01

The evidence about the benefits of omega-3 fatty acid intake on coronary heart disease (CHD) is not consistent. We thus aimed to assess the relation between dietary intake of total omega-3 fatty acids (from plant and marine foods) and marine polyunsaturated fatty acids (PUFAs), eicosapentaenoic acid (EPA) and docosahexaenoic acid (DHA), on the risk of CHD in the Spanish cohort of the European Prospective Investigation into Cancer and Nutrition (EPIC). The analysis included 41,091 men and women aged 20-69 years, recruited from 1992 to 1996 and followed-up until December 2004. Omega-3 fatty acid intake was estimated from a validated dietary questionnaire. Only participants with definite incident CHD event were considered as cases. Cox regression models were used to assess the association between the intake of total omega-3 fatty acids, EPA or DHA and CHD. A total of 609 participants (79% men) had a definite CHD event. Mean intakes of total omega-3 fatty acids, EPA and DHA were very similar in the cases and in the cohort, both in men and women. In the multivariate adjusted model, omega-3 fatty acids, EPA and DHA were not related to incident CHD in either men or women. The hazard ratios (HR) for omega-3 were 1.23 in men (95% CI 0.94-15.9, p = 0.20); and 0.77 in women (95% CI 0.46-1.30, p = 0.76). In the Spanish EPIC cohort, with a relatively high intake of fish, no association was found between EPA, DHA and total omega-3 fatty acid intake and risk of CHD. Copyright © 2013 Elsevier B.V. All rights reserved.

Chemical Evolution in Sersic 159-03 Observed with Xmm-Newton

DOE Office of Scientific and Technical Information (OSTI.GOV)

de Plaa, Jelle; Werner, N.; Bykov, A.M.

2006-03-10

Using a new long X-ray observation of the cluster of galaxies Sersic 159-03 with XMM-Newton, we derive radial temperature and abundance profiles using single- and multi-temperature models. The fits to the EPIC and RGS spectra prefer multi-temperature models especially in the core. The radial profiles of oxygen and iron measured with EPIC/RGS and the line profiles in RGS suggest that there is a dip in the O/Fe ratio in the centre of the cluster compared to its immediate surroundings. A possible explanation for the large scale metallicity distribution is that SNIa and SNII products are released in the ICM throughmore » ram-pressure stripping of in-falling galaxies. This causes a peaked metallicity distribution. In addition, SNIa in the central cD galaxy enrich mainly the centre of the cluster with iron. This excess of SNIa products is consistent with the low O/Fe ratio we detect in the centre of the cluster. We fit the abundances we obtain with yields from SNIa, SNII and Population-III stars to derive the clusters chemical evolution. We find that the measured abundance pattern does not require a Population-III star contribution. The relative contribution of the number of SNIa with respect to the total number of SNe which enrich the ICM is about 25-50%. Furthermore, we discuss the possible presence of a non-thermal component in the EPIC spectra. A potential source of this non-thermal emission can be inverse-Compton scattering between Cosmic Microwave Background (CMB) photons and relativistic electrons, which are accelerated in bow shocks associated with ram-pressure stripping of in-falling galaxies.« less

A long serendipitous XMM-Newton observation of the intermediate polar XY Ari1

NASA Astrophysics Data System (ADS)

Zengin Ćamurdan, D.; Balman, Ş.; Burwitz, V.

2018-07-01

XY Ari is one of the few known eclipsing intermediate polars. We present results from a detailed analysis of an unpublished archival observation using XMM-Newton EPIC pn and MOS data in a quiescent state of XY Ari. The X-ray orbital modulation and spin-pulse variations were investigated for energy-dependent modulations in different energy bands. The broad orbital modulation observed with various observations was confirmed with XMM-Newton in the hard X-ray (>1.6 keV). The EPIC light curves folded at the spin phases show a double-peak profile, as expected from two-pole accretion. The pulse profile is found to be energy-dependent. Hardness-ratio variations and energy modulation depth during spin modulation can be explained by photoelectric absorption. The simultaneously fitted EPIC spectra with a multi-temperature plasma emission model (CEVMKL) model yield a maximum plasma temperature of 28^{+3.1}_{-2.9} keV with an iron abundance Fe/Fe_{⊙}=0.37^{+0.06}_{-0.05}. We find two intrinsic partial covering absorption columns of 6.2^{+1.0}_{-0.9} × 10^{22} and 105.3^{+35.4}_{-30.4} × 10^{22} cm^{-2} with covering fractions of 0.53^{+0.05}_{-0.04}, 0.41^{+0.14}_{-0.13}, respectively. In addition, a Gaussian emission line at 6.43^{+0.01}_{-0.02} keV with an equivalent width of 51^{+12}_{-10} eV is required to account for fluorescent emission from neutral iron. The X-ray luminosity of the source is 4.2 × 1032 erg s-1 in the 0.2-10.0 keV energy band.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Güver, Tolga; Özel, Feryal; Psaltis, Dimitrios

Many techniques for measuring neutron star radii rely on absolute flux measurements in the X-rays. As a result, one of the fundamental uncertainties in these spectroscopic measurements arises from the absolute flux calibrations of the detectors being used. Using the stable X-ray burster, GS 1826–238, and its simultaneous observations by Chandra HETG/ACIS-S and RXTE /PCA as well as by XMM-Newton EPIC-pn and RXTE /PCA, we quantify the degree of uncertainty in the flux calibration by assessing the differences between the measured fluxes during bursts. We find that the RXTE /PCA and the Chandra gratings measurements agree with each other withinmore » their formal uncertainties, increasing our confidence in these flux measurements. In contrast, XMM-Newton EPIC-pn measures 14.0 ± 0.3% less flux than the RXTE /PCA. This is consistent with the previously reported discrepancy with the flux measurements of EPIC-pn, compared with EPIC MOS1, MOS2, and ACIS-S detectors. We also show that any intrinsic time-dependent systematic uncertainty that may exist in the calibration of the satellites has already been implicity taken into account in the neutron star radius measurements.« less

Seismic Analysis of Pulsating Subdwarf B Star EPIC 212508753 Using the K2 Mission

NASA Astrophysics Data System (ADS)

Crooke, John; Reed, Michael D.; Baran, Andrzej; Telting, John H.; Østensen, Roy H.

2018-01-01

EPIC 212508753 is a subdwarf B (hot horizontal branch, sdB) star which has been observed by the Kepler Space Telescope during its extended mission, K2, in short cadence mode where a new image is obtained roughly every minute for about 75 days. Using time series analysis of the data we have found the star to be a rare hybrid pulsator with both g- and p-mode pulsations where most of the pulsations are p modes. These pulsators are extremely important as p modes sample near the surface and g modes can sample deeper, near to the core. This means that hybrid pulsators allow us to characterize the entire star. The hotter, predominantly p-mode pulsators are rarer so that makes EPIC 212508753 particularly interesting for seismic study. In this poster we will present preliminary results of our analysis of K2 data. We have discovered frequency multiplets in both the p- and g-mode regions which we use to identify pulsation modes and determine that EPIC 212508753 rotates like a solid body, in contrast to some other sdB stars.

Modeling soil carbon sequestration with EPIC and the soil conditioning index

USDA-ARS?s Scientific Manuscript database

Increasing CO2 in the atmosphere is a concern, because of its potential to warm the planet. CO2 and other greenhouse gases act as a barrier to prevent heat escaping from the atmosphere. Prior to the industrial revolution, atmospheric CO2 concentration was about 280 parts per million (ppm). A deli...

3D Hall MHD-EPIC Simulations of Ganymede's Magnetosphere

NASA Astrophysics Data System (ADS)

Zhou, H.; Toth, G.; Jia, X.

2017-12-01

Fully kinetic modeling of a complete 3D magnetosphere is still computationally expensive and not feasible on current computers. While magnetohydrodynamic (MHD) models have been successfully applied to a wide range of plasma simulation, they cannot capture some important kinetic effects. We have recently developed a new modeling tool to embed the implicit particle-in-cell (PIC) model iPIC3D into the Block-Adaptive-Tree-Solarwind-Roe-Upwind-Scheme (BATS-R-US) magnetohydrodynamic model. This results in a kinetic model of the regions where kinetic effects are important. In addition to the MHD-EPIC modeling of the magnetosphere, the improved model presented here is now able to represent the moon as a resistive body. We use a stretched spherical grid with adaptive mesh refinement (AMR) to capture the resistive body and its boundary. A semi-implicit scheme is employed for solving the magnetic induction equation to allow time steps that are not limited by the resistivity. We have applied the model to Ganymede, the only moon in the solar system known to possess a strong intrinsic magnetic field, and included finite resistivity beneath the moon`s surface to model the electrical properties of the interior in a self-consistent manner. The kinetic effects of electrons and ions on the dayside magnetopause and tail current sheet are captured with iPIC3D. Magnetic reconnections under different upstream background conditions of several Galileo flybys are simulated to study the global reconnection rate and the magnetospheric dynamics

2002 Defense Modeling and Simulation Office (DMSO) Laboratory for Human Behavior Model Interchange Standards

DTIC Science & Technology

2003-07-01

standard release with the publicly available "mod" interface allows us to avoid purchasing a game engine license (approximate cost $350,000) from Epic...depletion is accurately simulated for ammunition * Both contain target detection, target identification, target selection, and collision avoidance and...into other game genres such as Real-Time Strategy (RTS) games and Massively Multiplayer Online Role- Playing Games ( MMORPG ). Unfortunately these game

Endometrial cancer risk prediction including serum-based biomarkers: results from the EPIC cohort.

PubMed

Fortner, Renée T; Hüsing, Anika; Kühn, Tilman; Konar, Meric; Overvad, Kim; Tjønneland, Anne; Hansen, Louise; Boutron-Ruault, Marie-Christine; Severi, Gianluca; Fournier, Agnès; Boeing, Heiner; Trichopoulou, Antonia; Benetou, Vasiliki; Orfanos, Philippos; Masala, Giovanna; Agnoli, Claudia; Mattiello, Amalia; Tumino, Rosario; Sacerdote, Carlotta; Bueno-de-Mesquita, H B As; Peeters, Petra H M; Weiderpass, Elisabete; Gram, Inger T; Gavrilyuk, Oxana; Quirós, J Ramón; Maria Huerta, José; Ardanaz, Eva; Larrañaga, Nerea; Lujan-Barroso, Leila; Sánchez-Cantalejo, Emilio; Butt, Salma Tunå; Borgquist, Signe; Idahl, Annika; Lundin, Eva; Khaw, Kay-Tee; Allen, Naomi E; Rinaldi, Sabina; Dossus, Laure; Gunter, Marc; Merritt, Melissa A; Tzoulaki, Ioanna; Riboli, Elio; Kaaks, Rudolf

2017-03-15

Endometrial cancer risk prediction models including lifestyle, anthropometric and reproductive factors have limited discrimination. Adding biomarker data to these models may improve predictive capacity; to our knowledge, this has not been investigated for endometrial cancer. Using a nested case-control study within the European Prospective Investigation into Cancer and Nutrition (EPIC) cohort, we investigated the improvement in discrimination gained by adding serum biomarker concentrations to risk estimates derived from an existing risk prediction model based on epidemiologic factors. Serum concentrations of sex steroid hormones, metabolic markers, growth factors, adipokines and cytokines were evaluated in a step-wise backward selection process; biomarkers were retained at p < 0.157 indicating improvement in the Akaike information criterion (AIC). Improvement in discrimination was assessed using the C-statistic for all biomarkers alone, and change in C-statistic from addition of biomarkers to preexisting absolute risk estimates. We used internal validation with bootstrapping (1000-fold) to adjust for over-fitting. Adiponectin, estrone, interleukin-1 receptor antagonist, tumor necrosis factor-alpha and triglycerides were selected into the model. After accounting for over-fitting, discrimination was improved by 2.0 percentage points when all evaluated biomarkers were included and 1.7 percentage points in the model including the selected biomarkers. Models including etiologic markers on independent pathways and genetic markers may further improve discrimination. © 2016 UICC.

A Cloud Microphysics Model for the Gas Giant Planets

NASA Astrophysics Data System (ADS)

Palotai, Csaba J.; Le Beau, Raymond P.; Shankar, Ramanakumar; Flom, Abigail; Lashley, Jacob; McCabe, Tyler

2016-10-01

Recent studies have significantly increased the quality and the number of observed meteorological features on the jovian planets, revealing banded cloud structures and discrete features. Our current understanding of the formation and decay of those clouds also defines the conceptual modes about the underlying atmospheric dynamics. The full interpretation of the new observational data set and the related theories requires modeling these features in a general circulation model (GCM). Here, we present details of our bulk cloud microphysics model that was designed to simulate clouds in the Explicit Planetary Hybrid-Isentropic Coordinate (EPIC) GCM for the jovian planets. The cloud module includes hydrological cycles for each condensable species that consist of interactive vapor, cloud and precipitation phases and it also accounts for latent heating and cooling throughout the transfer processes (Palotai and Dowling, 2008. Icarus, 194, 303-326). Previously, the self-organizing clouds in our simulations successfully reproduced the vertical and horizontal ammonia cloud structure in the vicinity of Jupiter's Great Red Spot and Oval BA (Palotai et al. 2014, Icarus, 232, 141-156). In our recent work, we extended this model to include water clouds on Jupiter and Saturn, ammonia clouds on Saturn, and methane clouds on Uranus and Neptune. Details of our cloud parameterization scheme, our initial results and their comparison with observations will be shown. The latest version of EPIC model is available as open source software from NASA's PDS Atmospheres Node.

Nutrient patterns and their food sources in an International Study Setting: report from the EPIC study.

PubMed

Moskal, Aurelie; Pisa, Pedro T; Ferrari, Pietro; Byrnes, Graham; Freisling, Heinz; Boutron-Ruault, Marie-Christine; Cadeau, Claire; Nailler, Laura; Wendt, Andrea; Kühn, Tilman; Boeing, Heiner; Buijsse, Brian; Tjønneland, Anne; Halkjær, Jytte; Dahm, Christina C; Chiuve, Stephanie E; Quirós, Jose R; Buckland, Genevieve; Molina-Montes, Esther; Amiano, Pilar; Huerta Castaño, José M; Gurrea, Aurelio Barricarte; Khaw, Kay-Tee; Lentjes, Marleen A; Key, Timothy J; Romaguera, Dora; Vergnaud, Anne-Claire; Trichopoulou, Antonia; Bamia, Christina; Orfanos, Philippos; Palli, Domenico; Pala, Valeria; Tumino, Rosario; Sacerdote, Carlotta; de Magistris, Maria Santucci; Bueno-de-Mesquita, H Bas; Ocké, Marga C; Beulens, Joline W J; Ericson, Ulrika; Drake, Isabel; Nilsson, Lena M; Winkvist, Anna; Weiderpass, Elisabete; Hjartåker, Anette; Riboli, Elio; Slimani, Nadia

2014-01-01

Compared to food patterns, nutrient patterns have been rarely used particularly at international level. We studied, in the context of a multi-center study with heterogeneous data, the methodological challenges regarding pattern analyses. We identified nutrient patterns from food frequency questionnaires (FFQ) in the European Prospective Investigation into Cancer and Nutrition (EPIC) Study and used 24-hour dietary recall (24-HDR) data to validate and describe the nutrient patterns and their related food sources. Associations between lifestyle factors and the nutrient patterns were also examined. Principal component analysis (PCA) was applied on 23 nutrients derived from country-specific FFQ combining data from all EPIC centers (N = 477,312). Harmonized 24-HDRs available for a representative sample of the EPIC populations (N = 34,436) provided accurate mean group estimates of nutrients and foods by quintiles of pattern scores, presented graphically. An overall PCA combining all data captured a good proportion of the variance explained in each EPIC center. Four nutrient patterns were identified explaining 67% of the total variance: Principle component (PC) 1 was characterized by a high contribution of nutrients from plant food sources and a low contribution of nutrients from animal food sources; PC2 by a high contribution of micro-nutrients and proteins; PC3 was characterized by polyunsaturated fatty acids and vitamin D; PC4 was characterized by calcium, proteins, riboflavin, and phosphorus. The nutrients with high loadings on a particular pattern as derived from country-specific FFQ also showed high deviations in their mean EPIC intakes by quintiles of pattern scores when estimated from 24-HDR. Center and energy intake explained most of the variability in pattern scores. The use of 24-HDR enabled internal validation and facilitated the interpretation of the nutrient patterns derived from FFQs in term of food sources. These outcomes open research opportunities and perspectives of using nutrient patterns in future studies particularly at international level.

African crop yield reductions due to increasingly unbalanced Nitrogen and Phosphorus consumption

NASA Astrophysics Data System (ADS)

van der Velde, Marijn; Folberth, Christian; Balkovič, Juraj; Ciais, Philippe; Fritz, Steffen; Janssens, Ivan A.; Obersteiner, Michael; See, Linda; Skalský, Rastislav; Xiong, Wei; Peñuealas, Josep

2014-05-01

The impact of soil nutrient depletion on crop production has been known for decades, but robust assessments of the impact of increasingly unbalanced nitrogen (N) and phosphorus (P) application rates on crop production are lacking. Here, we use crop response functions based on 741 FAO maize crop trials and EPIC crop modeling across Africa to examine maize yield deficits resulting from unbalanced N:P applications under low, medium, and high input scenarios, for past (1975), current, and future N:P mass ratios of respectively, 1:0.29, 1:0.15, and 1:0.05. At low N inputs (10 kg/ha), current yield deficits amount to 10% but will increase up to 27% under the assumed future N:P ratio, while at medium N inputs (50 kg N/ha), future yield losses could amount to over 40%. The EPIC crop model was then used to simulate maize yields across Africa. The model results showed relative median future yield reductions at low N inputs of 40%, and 50% at medium and high inputs, albeit with large spatial variability. Dominant low-quality soils such as Ferralsols, which are strongly adsorbing P, and Arenosols with a low nutrient retention capacity, are associated with a strong yield decline, although Arenosols show very variable crop yield losses at low inputs. Optimal N:P ratios, i.e. those where the lowest amount of applied P produces the highest yield (given N input) where calculated with EPIC to be as low as 1:0.5. Finally, we estimated the additional P required given current N inputs, and given N inputs that would allow Africa to close yield gaps (ca. 70%). At current N inputs, P consumption would have to increase 2.3-fold to be optimal, and to increase 11.7-fold to close yield gaps. The P demand to overcome these yield deficits would provide a significant additional pressure on current global extraction of P resources.

Association between preoperative erectile dysfunction and prostate cancer features--an analysis from the Duke Prostate Center Database.

PubMed

Kimura, Masaki; Bañez, Lionel L; Gerber, Leah; Qi, Jim; Tsivian, Matvey; Freedland, Stephen J; Satoh, Takefumi; Polascik, Thomas J; Baba, Shiro; Moul, Judd W

2012-04-01

Erectile dysfunction (ED) is related to several co-morbidities including obesity, metabolic syndrome, cigarette smoking, and low testosterone, all of which have been reported to be associated with adverse prostate cancer features. To examine whether preoperative ED has a relationship with adverse prostate cancer features in patients who underwent radical prostatectomy (RP). We analyzed data from our institution on 676 patients who underwent RP between 2001 and 2010. Crude and adjusted logistic regression models were used to investigate the association between preoperative ED and several pathological parameters. The log-rank test and multivariate proportional hazards model were conducted to determine the association of preoperative ED with biochemical recurrence (BCR). The expanded prostate cancer index composite (EPIC) instrument was used to evaluate preoperative erectile function (EF). Preoperative normal EF was defined as EPIC-SF ≥ 60 points while ED was defined as preoperative EPIC-SF lower than 60 points. Preoperatively, a total of 343 (50.7%) men had normal EF and 333 (49.3%) men had ED. After adjusting for covariates, preoperative ED was identified a risk factor for positive extracapsular extension (OR 1.57; P = 0.029) and high percentage of tumor involvement (OR 1.56; P = 0.047). In a Kaplan-Meier curve, a trend was identified that patients with ED had higher incidence of BCR than men with normal EF (P = 0.091). Moreover, using a multivariate Cox model, higher preoperative EF was negatively associated with BCR (HR 0.99; P = 0.014). These results suggest that the likelihood for adverse pathological outcomes as well as BCR following prostatectomy is higher among men with preoperative ED, though these results require validation in larger datasets. The present study indicates that preoperative ED might be a surrogate for adverse prostate cancer outcomes following RP. © 2011 International Society for Sexual Medicine.

Land, Water and Society in the Maya Lowlands

NASA Astrophysics Data System (ADS)

Murtha, T.; French, K.; Duffy, C.; Webster, D.

2013-12-01

This paper reports the results of our project investigating the long-term spatial and temporal dynamics of land use management, agricultural decision-making and patterns of resource availability in the tropical lowlands of Central America. Overall, our project combines diachronic environmental simulation with historic settlement pattern survey to address a series of long-standing questions about the coupled natural and human (CNH) landscape history in the Central Maya lowlands (at the UNESCO world heritage site of Tikal in the Maya Biosphere Reserve). The paper describes the preliminary results of our project, including changing patterns of land, water, settlement and political history using climate, soil and hydrologic modeling and time series spatial analysis of population and settlement patterns. The critical period of the study, 1000 BC until the present, begins with dispersed settlements accompanied by widespread deforestation and soil erosion. Population size and density grows rapidly for 800 years, while deforestation and erosion rates decline; however, there is striking evidence of political evolution during this period, including the construction of monumental architecture, hieroglyphic monuments detailing wars and alliances, and the construction of a defensive earthwork feature, signaling political territories and possibly delineating natural resource boundaries. Population decline and steady reforestation followed until more recent migration into the region, which has impacted the biosphere ecology. Building on our previous research regionally and comparative research completed in Belize and Mexico, we are modeling sample periods the 3,000-year landscape history of the region, comparing land and water availability to population distributions and what we know about political history. Simulations are generated using historic climate and land use data, primarily relying on the Erosion Productivity Impact Calculator (EPIC) and the Penn State Integrated Hydrologic Modeling System (PIHMgis). This study primarily contributes to understanding long-term environmental change, agrarian decision-making, settlement patterns and critical issues facing agrarian communities globally. Specifically, our research provides an enhanced understanding of one of the most compelling landscape narratives of coupled human and natural history, i.e., the rise and fall of the Maya in the lowland tropical forest of Central America. Importantly, we offer a new approach to studying these broad issues, by integrating coupled climate, soil and hydrologic modeling, with more traditional landscape and anthropological research methods. Data model illustrating relationship between deforestation maize production and population history. 100 year sample periods are highlighted.

The Epic Poem "Raol de Cambrai" and Student Analysis of the French Feudal Aristocracy.

ERIC Educational Resources Information Center

Madison, Kenneth G.

1980-01-01

Suggests how college history teachers can help students understand the French aristocracy and its role in medieval society by using a twelfth century epic. "Raol de Cambrai" gives students a sense that the poem's action could have happened to real people. A content analysis of the poem's action and characters is included. (DB)

Georgia Deaf-Blind Pilot Project: Project EPIC. Final Report. Optional Pilot Projects for Children with Deaf-Blindness.

ERIC Educational Resources Information Center

Georgia State Dept. of Education, Atlanta.

This final report describes activities and accomplishments of Project EPIC (Effective Partner Interaction in the Community), a 3-year federally supported project in Georgia to facilitate the establishment and implementation of effective educational practices with students having deaf-blindness. The project was designed to expand students' present…

PLTW and Epics-High: Curriculum Comparisons to Support Problem Solving in the Context of Engineering Design. Research in Engineering and Technology Education

ERIC Educational Resources Information Center

Kelley, Todd; Brenner, Daniel C.; Pieper, Jon T.

2010-01-01

A comparative study was conducted to compare two approaches to engineering design curriculum between different schools (inter-school) and between two curricular approaches, "Project Lead the Way" (PLTW) and "Engineering Projects in Community Service" (EPIC High) (inter-curricular). The researchers collected curriculum…

Linking Cholesterol to Cancer: Circulating 27-Hydroxycholesterol and Breast Cancer Risk by Tumor Subtype and Expression of CYP27A1 and CYP7B1

DTIC Science & Technology

2016-04-01

Prospective Investigation into Cancer and Nutrition (EPIC)-Heidelberg cohort. This study capitalizes on the availability of pre-diagnostic serum samples...we identified eligible breast cancer cases (n=530) from the European Investigation into Cancer and Nutrition (EPIC) – Heidelberg cohort, verified

Becoming Teachers' Little Epics: What Digital Storytelling Might Reveal

ERIC Educational Resources Information Center

Radford, Linda; Aitken, Avril

2014-01-01

This paper discusses pre-service teachers' use of multi-modal tools to produce three-minute films in light of critical moments in their teaching practice. Two cases are considered; each centers on a film, a "little epic" that was produced by a future teacher who attempts to work within an anti-racist framework for social justice.…

The Owens Valley Epics

ERIC Educational Resources Information Center

Bahr, Donald

2007-01-01

One of the best-studied, least-discussed texts of Native American oral literature is a long Mojave "epic" taken down from a man named Inyo-kutavere by Alfred Kroeber in 1902 and published in 1951. The text was published in twenty-nine pages along with forty-eight pages of commentary and twenty-five pages of notes. In 1999, Arthur Hatto, an…

"El Norte," Deracination and Circularity: An Epic Gone Awry

ERIC Educational Resources Information Center

Brakel, Arthur

2007-01-01

Early journalistic reviews (e.g., Gold, Ebert, and Kael) of "El Norte" (1983), Gregory Nava's first major film, identify it as an epic. In "El Norte" the siblings Enrique and Rosa, two Guatemalan Amerindians, leave their native village on a quest to what for them is the mythical land in the North. Although "El Norte"…

77 FR 73655 - Epic Marketplace, Inc., and Epic Media Group, LLC; Analysis of Proposed Consent Order To Aid...

Federal Register 2010, 2011, 2012, 2013, 2014

2012-12-11

... prohibiting unfair or deceptive acts or practices or unfair methods of competition. The attached Analysis to...; Analysis of Proposed Consent Order To Aid Public Comment AGENCY: Federal Trade Commission. ACTION: Proposed... period of thirty (30) days. The following Analysis to Aid Public Comment describes the terms of the...

"Epic Ear Defence"-A Game to Educate Children on the Risks of Noise-Related Hearing Loss.

PubMed

Eikelboom, Robert H; Leishman, Natalie F; Munro, Tyler J; Nguyen, Bach; Riggs, Peter R; Tennant, Jonathon; West, Rhiannon K; Robertson, William B

2012-12-01

Hearing loss resulting from overexposure to entertainment-related sounds is a modern concern. "Epic Ear Defence" places the player in the three-dimensional environment of the ear canal and challenges the player to defend the ear from various noises, to delay the onset of noise-related hearing loss.

The Epic Narrative of Intellectual Culture as a Framework for Curricular Coherence.

ERIC Educational Resources Information Center

Carson, Robert N.

2002-01-01

Describes a proposed middle school curriculum designed to coordinate the major subject areas around a single coherent story line and tell the epic tale of the development of formal intellectual culture from its distant origins to the present day. Ourstory explores the history of scientific culture from the perspective of foundational disciplines…

77 FR 65710 - Notice of Submission of Proposed Information Collection to OMB; Indian Housing Block Grants (IHBG...

Federal Register 2010, 2011, 2012, 2013, 2014

2012-10-30

... available a revised Word version, an Excel version, and a version on HUD's Energy and Performance... recipient may elect to submit to HUD either the Word, Excel, or EPIC versions; however, the Excel and EPIC versions are preferred because of their automated capabilities and reduced burden. The Word, Excel, and...

77 FR 49005 - Notice of Proposed Information Collection for Public Comment; Indian Housing Block Grant (IHBG...

Federal Register 2010, 2011, 2012, 2013, 2014

2012-08-15

.../APR), and two additional, automated versions of form: an Excel version and a version on HUD's Energy... same information, but have different burdens due to the automated capabilities of the Excel and EPIC versions. These automated enhancements make the Excel and EPIC versions easier and faster to complete than...

A Multilevel Model to Estimate the Within- and the Between-Center Components of the Exposure/Disease Association in the EPIC Study

PubMed Central

2015-01-01

In a multicenter study, the overall relationship between exposure and the risk of cancer can be broken down into a within-center component, which reflects the individual level association, and a between-center relationship, which captures the association at the aggregate level. A piecewise exponential proportional hazards model with random effects was used to evaluate the association between dietary fiber intake and colorectal cancer (CRC) risk in the EPIC study. During an average follow-up of 11.0 years, 4,517 CRC events occurred among study participants recruited in 28 centers from ten European countries. Models were adjusted by relevant confounding factors. Heterogeneity among centers was modelled with random effects. Linear regression calibration was used to account for errors in dietary questionnaire (DQ) measurements. Risk ratio estimates for a 10 g/day increment in dietary fiber were equal to 0.90 (95%CI: 0.85, 0.96) and 0.85 (0.64, 1.14), at the individual and aggregate levels, respectively, while calibrated estimates were 0.85 (0.76, 0.94), and 0.87 (0.65, 1.15), respectively. In multicenter studies, over a straightforward ecological analysis, random effects models allow information at the individual and ecologic levels to be captured, while controlling for confounding at both levels of evidence. PMID:25785729

Impact design methods for ceramic components in gas turbine engines

NASA Technical Reports Server (NTRS)

Song, J.; Cuccio, J.; Kington, H.

1991-01-01

Methods currently under development to design ceramic turbine components with improved impact resistance are presented. Two different modes of impact damage are identified and characterized, i.e., structural damage and local damage. The entire computation is incorporated into the EPIC computer code. Model capability is demonstrated by simulating instrumented plate impact and particle impact tests.

EPIC Computational Models of Psychological Refractory-Period Effects in Human Multiple-Task Performance.

ERIC Educational Resources Information Center

Meyer, David E.; Kieras, David E.

Perceptual-motor and cognitive processes whereby people perform multiple concurrent tasks have been studied through an overlapping-tasks procedure in which two successive choice-reaction tasks are performed with a variable interval (stimulus onset asynchrony, or SOA) between the beginning of the first and second tasks. The increase in subjects'…

A Structure and Scheme for the Evaluation of Innovative Programs. The EPIC Brief, Issue No. 2.

ERIC Educational Resources Information Center

Objective evaluation of school programs is a process in which a school staff collects information used to provide feedback as to whether or not a given set of objectives has been met. The Evaluative Programs for Innovativ e Curriculums (EPIC) four-step scheme of objective evaluation is based on a three-dimensional structure of variables…

The True Lion King of Africa: The Epic History of Sundiata, King of Old Mali.

ERIC Educational Resources Information Center

Paterno, Domenica R.

David Wisniewski's 1992 picture book version of the African epic of "Sundiata, Lion King of Mali" and the actual historical account of the 13th century Lion King, Sundiata, are both badly served by Disney's "The Lion King." Disney has been praised for using African animals as story characters; for using the African landscape as…

More than One C: Educating Students to Be Ready for Careers and College. Policy Brief

ERIC Educational Resources Information Center

Thier, Michael; Beach, Paul; Lench, Sarah Collins; Austin, Ellie; Coleman, Matt

2016-01-01

This policy brief discusses the United State's bias toward college-going as the gold standard and how to counteract that singular mode of thinking. The Educational Policy Improvement Center (EPIC) outlines why definitions of K-12 success should balance an emphasis on each C (college and career). EPIC also shows the related pitfalls of districts…

Application of a XMM-Newton EPIC Monte Carlo to Analysis And Interpretation of Data for Abell 1689, RXJ0658-55 And the Centaurus Clusters of Galaxies

DOE Office of Scientific and Technical Information (OSTI.GOV)

Andersson, Karl E.; /Stockholm U. /SLAC; Peterson, J.R.

2007-04-17

We propose a new Monte Carlo method to study extended X-ray sources with the European Photon Imaging Camera (EPIC) aboard XMM Newton. The Smoothed Particle Inference (SPI) technique, described in a companion paper, is applied here to the EPIC data for the clusters of galaxies Abell 1689, Centaurus and RXJ 0658-55 (the ''bullet cluster''). We aim to show the advantages of this method of simultaneous spectral-spatial modeling over traditional X-ray spectral analysis. In Abell 1689 we confirm our earlier findings about structure in temperature distribution and produce a high resolution temperature map. We also confirm our findings about velocity structuremore » within the gas. In the bullet cluster, RXJ 0658-55, we produce the highest resolution temperature map ever to be published of this cluster allowing us to trace what looks like the motion of the bullet in the cluster. We even detect a south to north temperature gradient within the bullet itself. In the Centaurus cluster we detect, by dividing up the luminosity of the cluster in bands of gas temperatures, a striking feature to the north-east of the cluster core. We hypothesize that this feature is caused by a subcluster left over from a substantial merger that slightly displaced the core. We conclude that our method is very powerful in determining the spatial distributions of plasma temperatures and very useful for systematic studies in cluster structure.« less

Creation of an Internal Teledermatology Store-and-Forward System in an Existing Electronic Health Record

PubMed Central

Carter, Zachary A.; Goldman, Shauna; Anderson, Kristen; Li, Xiaxiao; Hynan, Linda S.; Chong, Benjamin F.

2017-01-01

Importance External store-and-forward (SAF) teledermatology systems operate separately from the primary health record and have many limitations, including care fragmentation, inadequate communication among clinicians, and privacy and security concerns, among others. Development of internal SAF workflows within existing electronic health records (EHRs) should be the standard for large health care organizations for delivering high-quality dermatologic care, improving access, and capturing other telemedicine benchmark data. Epic EHR software (Epic Systems Corporation) is currently one of the most widely used EHR system in the United States, and development of a successful SAF workflow within it is needed. Objectives To develop an SAF teledermatology workflow within the Epic system, the existing EHR system of Parkland Health and Hospital System (Dallas, Texas), assess its effectiveness in improving access to care, and validate its reliability; and to evaluate the system’s ability to capture meaningful outcomes. Design, Setting, and Participants Electronic consults were independently evaluated by 2 board-certified dermatologists, who provided diagnoses and treatment plans to primary care physicians (PCPs). Results were compared with in-person referrals from May to December 2013 from the same clinic (a community outpatient clinic in a safety-net public hospital system). Patients were those 18 years or older with dermatologic complaints who would have otherwise been referred to dermatology clinic. Main Outcomes and Measures Median time to evaluation; percentage of patients evaluated by a dermatologist through either teledermatology or in-person compared with the previous year. Results Seventy-nine teledermatology consults were placed by 6 PCPs from an outpatient clinic between May and December 2014; 57 (74%) were female and their mean (SD) age was 47.0 (12.4) years. Teledermatology reduced median time to evaluation from 70.0 days (interquartile range [IQR], 33.25-83.0 days) to 0.5 days (IQR, 0.172-0.94 days) and median time to treatment from 73.5 to 3.0 days compared with in-person dermatology visits. Overall, a greater percentage of patients (120 of 144 [83.3%]) were evaluated by a dermatologist through either teledermatology or in-person during the 2014 study period compared with the previous year (111 of 173 [64.2%]). Primary care physicians followed management recommendations 93% of the time. Conclusions and Relevance Epic-based SAF teledermatology can improve access to dermatologic care in a public safety-net hospital setting. We hope that the system will serve as a model for other health care organizations wanting to create SAF teledermatology workflows within the Epic EHR system. PMID:28423156

EPIC

NASA Image and Video Library

2011-12-29

ISS030-E-017789 (29 Dec. 2011) --- Working in chorus with the International Space Station team in Houston?s Mission Control Center, this astronaut and his Expedition 30 crewmates on the station install a set of Enhanced Processor and Integrated Communications (EPIC) computer cards in one of seven primary computers onboard. The upgrade will allow more experiments to operate simultaneously, and prepare for the arrival of commercial cargo ships later this year.

EPIC Computer Cards

NASA Image and Video Library

2011-12-29

ISS030-E-017776 (29 Dec. 2011) --- Working in chorus with the International Space Station team in Houston?s Mission Control Center, this astronaut and his Expedition 30 crewmates on the station install a set of Enhanced Processor and Integrated Communications (EPIC) computer cards in one of seven primary computers onboard. The upgrade will allow more experiments to operate simultaneously, and prepare for the arrival of commercial cargo ships later this year.

75 FR 12230 - Black Oak Energy, L.L.C., EPIC Merchant Energy, LP, SESCO Enterprises, LLC v. PJM Interconnection...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-03-15

... Energy, L.L.C., EPIC Merchant Energy, LP, SESCO Enterprises, LLC v. PJM Interconnection, L.L.C.; Notice of Filing March 8, 2010. Take notice that on March 1, 2010, PJM Interconnection, L.L.C. filed a..., Order Accepting Compliance filing issued in this proceeding, Black Oak Energy, L.L.C., et al. v. PJM...

Joint effect of unlinked genotypes: application to type 2 diabetes in the EPIC-Potsdam case-cohort study.

PubMed

Knüppel, Sven; Meidtner, Karina; Arregui, Maria; Holzhütter, Hermann-Georg; Boeing, Heiner

2015-07-01

Analyzing multiple single nucleotide polymorphisms (SNPs) is a promising approach to finding genetic effects beyond single-locus associations. We proposed the use of multilocus stepwise regression (MSR) to screen for allele combinations as a method to model joint effects, and compared the results with the often used genetic risk score (GRS), conventional stepwise selection, and the shrinkage method LASSO. In contrast to MSR, the GRS, conventional stepwise selection, and LASSO model each genotype by the risk allele doses. We reanalyzed 20 unlinked SNPs related to type 2 diabetes (T2D) in the EPIC-Potsdam case-cohort study (760 cases, 2193 noncases). No SNP-SNP interactions and no nonlinear effects were found. Two SNP combinations selected by MSR (Nagelkerke's R² = 0.050 and 0.048) included eight SNPs with mean allele combination frequency of 2%. GRS and stepwise selection selected nearly the same SNP combinations consisting of 12 and 13 SNPs (Nagelkerke's R² ranged from 0.020 to 0.029). LASSO showed similar results. The MSR method showed the best model fit measured by Nagelkerke's R² suggesting that further improvement may render this method a useful tool in genetic research. However, our comparison suggests that the GRS is a simple way to model genetic effects since it does not consider linkage, SNP-SNP interactions, and no non-linear effects. © 2015 John Wiley & Sons Ltd/University College London.

Student Buy-In to Active Learning in a College Science Course

ERIC Educational Resources Information Center

Cavanagh, Andrew J.; Aragón, Oriana R.; Chen, Xinnian; Couch, Brian; Durham, Mary; Bobrownicki, Aiyana; Hanauer, David I.; Graham, Mark J.

2016-01-01

The benefits of introducing active learning in college science courses are well established, yet more needs to be understood about student buy-in to active learning and how that process of buy-in might relate to student outcomes. We test the exposure-persuasion-identification-commitment (EPIC) process model of buy-in, here applied to student (n =…

The EPIC nutrient database project (ENDB): a first attempt to standardize nutrient databases across the 10 European countries participating in the EPIC study.

PubMed

Slimani, N; Deharveng, G; Unwin, I; Southgate, D A T; Vignat, J; Skeie, G; Salvini, S; Parpinel, M; Møller, A; Ireland, J; Becker, W; Farran, A; Westenbrink, S; Vasilopoulou, E; Unwin, J; Borgejordet, A; Rohrmann, S; Church, S; Gnagnarella, P; Casagrande, C; van Bakel, M; Niravong, M; Boutron-Ruault, M C; Stripp, C; Tjønneland, A; Trichopoulou, A; Georga, K; Nilsson, S; Mattisson, I; Ray, J; Boeing, H; Ocké, M; Peeters, P H M; Jakszyn, P; Amiano, P; Engeset, D; Lund, E; de Magistris, M Santucci; Sacerdote, C; Welch, A; Bingham, S; Subar, A F; Riboli, E

2007-09-01

This paper describes the ad hoc methodological concepts and procedures developed to improve the comparability of Nutrient databases (NDBs) across the 10 European countries participating in the European Prospective Investigation into Cancer and Nutrition (EPIC). This was required because there is currently no European reference NDB available. A large network involving national compilers, nutritionists and experts on food chemistry and computer science was set up for the 'EPIC Nutrient DataBase' (ENDB) project. A total of 550-1500 foods derived from about 37,000 standardized EPIC 24-h dietary recalls (24-HDRS) were matched as closely as possible to foods available in the 10 national NDBs. The resulting national data sets (NDS) were then successively documented, standardized and evaluated according to common guidelines and using a DataBase Management System specifically designed for this project. The nutrient values of foods unavailable or not readily available in NDSs were approximated by recipe calculation, weighted averaging or adjustment for weight changes and vitamin/mineral losses, using common algorithms. The final ENDB contains about 550-1500 foods depending on the country and 26 common components. Each component value was documented and standardized for unit, mode of expression, definition and chemical method of analysis, as far as possible. Furthermore, the overall completeness of NDSs was improved (>or=99%), particularly for beta-carotene and vitamin E. The ENDB constitutes a first real attempt to improve the comparability of NDBs across European countries. This methodological work will provide a useful tool for nutritional research as well as end-user recommendations to improve NDBs in the future.

Defining quality indicators for best-practice management of inflammatory bowel disease in Canada

PubMed Central

Nguyen, Geoffrey C; Devlin, Shane M; Afif, Waqqas; Bressler, Brian; Gruchy, Steven E; Kaplan, Gilaad G; Oliveira, Liliana; Plamondon, Sophie; Seow, Cynthia H; Williams, Chadwick; Wong, Karen; Yan, Brian M; Jones, Jennifer

2014-01-01

BACKGROUND: There is a paucity of published data regarding the quality of care of inflammatory bowel disease (IBD) in Canada. Clinical quality indicators are quantitative end points used to guide, monitor and improve the quality of patient care. In Canada, where universal health care can vary significantly among provinces, quality indicators can be used to identify potential gaps in the delivery of IBD care and standardize the approach to interprovincial management. METHODS: The Emerging Practice in IBD Collaborative (EPIC) group generated a shortlist of IBD quality indicators based on a comprehensive literature review. An iterative voting process was used to select quality indicators to take forward. In a face-to-face meeting with the EPIC group, available evidence to support each quality indicator was presented by the EPIC member aligned to it, followed by group discussion to agree on the wording of the statements. The selected quality indicators were then ratified in a final vote by all EPIC members. RESULTS: Eleven quality indicators for the management of IBD within the single-payer health care system of Canada were developed. These focus on accurate diagnosis, appropriate and timely management, disease monitoring, and prevention or treatment of complications of IBD or its therapy. CONCLUSIONS: These quality indicators are measurable, reflective of the evidence base and expert opinion, and define a standard of care that is at least a minimum that should be expected for IBD management in Canada. The next steps for the EPIC group involve conducting research to assess current practice across Canada as it pertains to these quality indicators and to measure the impact of each of these indicators on patient outcomes. PMID:24839622

Erasmus Darwin's Deistic Dissent and Didactic Epic Poetry: Promoting Science Education to a Mixed Audience Under the Banner of Tolerance

NASA Astrophysics Data System (ADS)

Martin, Kirsten Anne

Erasmus Darwin's task as a Deistic Dissenter poet who wished to promote science education to a mixed audience was complex. There was mainstream concern over what Deists and Dissenters actually believed about God, their involvement in science, and, especially, how their published works, whatever the subject, might affect public morality and politics. I argue that Darwin's poetry is primarily in the genre of Lucretian didactic epic but that it also involves elements of other written traditions (literary and non-literary). I focus on English didactic poetry, the theological written traditions of Dissent and Deism, and a particular tradition of erotic satire. The genre of Lucretian didactic epic and the tradition of English didactic poetry are non-identical. In Darwin's Lucretian didactic epic, resemblances to such poems as Pope's Essay on Man challenge ideas about what kind of narrative a didactic poem in the English language can deliver. Techniques from the theological written traditions of Dissent and Deism reflect Darwin's affiliations, signal that science education fits within a larger debate about intellectual freedom, and promote tolerance for differences of opinion about nature. Mimicry of a particular tradition of erotic satire helps to downplay the address to a mixed audience while satirising some common misconceptions about poetry, botany, and women in the period. Darwin's poetry challenges ideas about what people from his community of belief meant to communicate or transmit by writing for the general public, what the general public was entitled to learn, and what poetry was able to teach. Perhaps Darwin's biggest modification of Lucretian didactic epic was that he did not tell his readers exactly what to think, but how.

Cooking of meat and fish in Europe--results from the European Prospective Investigation into Cancer and Nutrition (EPIC).

PubMed

Rohrmann, S; Linseisen, J; Becker, N; Norat, T; Sinha, R; Skeie, G; Lund, E; Martínez, C; Barricarte, A; Mattisson, I; Berglund, G; Welch, A; Davey, G; Overvad, K; Tjønneland, A; Clavel-Chapelon, F; Kesse, E; Lotze, G; Klipstein-Grobusch, K; Vasilopoulou, E; Polychronopoulos, E; Pala, V; Celentano, E; Bueno-De-Mesquita, H B; Peeters, P H M; Riboli, E; Slimani, N

2002-12-01

There is epidemiologic evidence that the consumption of fried, grilled or barbecued meat and fish that are well-done or browned may be associated with an increased cancer risk. These high-temperature cooking methods are thought to be surrogates for mutagens and carcinogens produced in meat and fish, eg heterocyclic amines or polycyclic hydrocarbons. Since data on food cooking methods are scarce, the aim of this study was to describe the variation in meat and fish cooking methods in different parts of Europe. Using a standardized 24 h recall from a sub-sample of the EPIC cohort (35 644 persons, 35-75 y old), mean daily intake of meat and fish prepared by different cooking methods and the relative contribution of the cooking methods to the overall cooking of meat and fish was calculated. Whereas frying was more often noted in northern Europe, roasting and stir frying were more often used in the south. Concerning high-temperature cooking methods, their frequency of application varies between 15% in the EPIC cohort of North-Italy and 49% in the cohort of The Netherlands. Average consumption of fried, grilled and barbecued meat and fish ranges from a low of 12 g/day in the centres in southern Spain to a high of 91 g/day in northern Spain. High variation in both the kind of meat/fish consumed as well as its cooking methods is observed within EPIC. In order to use this variation for the evaluation of the impact of cooking methods on cancer risk, a questionnaire on meat and fish cooking methods is being developed and could be applied in the whole EPIC cohort.

EPIC-Heart: the cardiovascular component of a prospective study of nutritional, lifestyle and biological factors in 520,000 middle-aged participants from 10 European countries.

PubMed

Danesh, John; Saracci, Rodolfo; Berglund, Göran; Feskens, Edith; Overvad, Kim; Panico, Salvatore; Thompson, Simon; Fournier, Agnès; Clavel-Chapelon, Françoise; Canonico, Marianne; Kaaks, Rudolf; Linseisen, Jakob; Boeing, Heiner; Pischon, Tobias; Weikert, Cornelia; Olsen, Anja; Tjønneland, Anne; Johnsen, Søren Paaske; Jensen, Majken Karoline; Quirós, Jose R; Svatetz, Carlos Alberto Gonzalez; Pérez, Maria-José Sánchez; Larrañaga, Nerea; Sanchez, Carmen Navarro; Iribas, Concepción Moreno; Bingham, Sheila; Khaw, Kay-Tee; Wareham, Nick; Key, Timothy; Roddam, Andrew; Trichopoulou, Antonia; Benetou, Vassiliki; Trichopoulos, Dimitrios; Masala, Giovanna; Sieri, Sabina; Tumino, Rosario; Sacerdote, Carlotta; Mattiello, Amalia; Verschuren, W M Monique; Bueno-de-Mesquita, H Bas; Grobbee, Diederick E; van der Schouw, Yvonne T; Melander, Olle; Hallmans, Göran; Wennberg, Patrik; Lund, Eiliv; Kumle, Merethe; Skeie, Guri; Ferrari, Pietro; Slimani, Nadia; Norat, Teresa; Riboli, Elio

2007-01-01

EPIC-Heart is the cardiovascular component of the European Prospective Investigation into Cancer and Nutrition (EPIC), a multi-centre prospective cohort study investigating the relationship between nutrition and major chronic disease outcomes. Its objective is to advance understanding about the separate and combined influences of lifestyle (especially dietary), environmental, metabolic and genetic factors in the development of cardiovascular diseases by making best possible use of the unusually informative database and biological samples in EPIC. Between 1992 and 2000, 519,978 participants (366,521 women and 153,457 men, mostly aged 35-70 years) in 23 centres in 10 European countries commenced follow-up for cause- specific mortality, cancer incidence and major cardiovascular morbidity. Dietary information was collected with quantitative questionnaires or semi-quantitative food frequency questionnaires, including a 24-h dietary recall sub-study to help calibrate the dietary measurements. Information was collected on physical activity, tobacco smoking, alcohol consumption, occupational history, socio-economic status, and history of previous illnesses. Anthropometric measurements and blood pressure recordings were made in the majority of participants. Blood samples were taken from 385,747 individuals, from which plasma, serum, red cells, and buffy coat fractions were separated and aliquoted for long-term storage. By 2004, an estimated 10,000 incident fatal and non-fatal coronary and stroke events had been recorded. The first cycle of EPIC-Heart analyses will assess associations of coronary mortality with several prominent dietary hypotheses and with established cardiovascular risk factors. Subsequent analyses will extend this approach to non-fatal cardiovascular outcomes and to further dietary, biochemical and genetic factors.

Radial force measurement of endovascular stents: Influence of stent design and diameter.

PubMed

Matsumoto, Takuya; Matsubara, Yutaka; Aoyagi, Yukihiko; Matsuda, Daisuke; Okadome, Jun; Morisaki, Koichi; Inoue, Kentarou; Tanaka, Shinichi; Ohkusa, Tomoko; Maehara, Yoshihiko

2016-04-01

Angioplasty and endovascular stent placement is used in case to rescue the coverage of main branches to supply blood to brain from aortic arch in thoracic endovascular aortic repair. This study assessed mechanical properties, especially differences in radial force, of different endovascular and thoracic stents. We analyzed the radial force of three stent models (Epic, E-Luminexx and SMART) stents using radial force-tester method in single or overlapping conditions. We also analyzed radial force in three thoracic stents using Mylar film testing method: conformable Gore-TAG, Relay, and Valiant Thoracic Stent Graft. Overlapping SMART stents had greater radial force than overlapping Epic or Luminexx stents (P < 0.01). The radial force of the thoracic stents was greater than that of all three endovascular stents (P < 0.01). Differences in radial force depend on types of stents, site of deployment, and layer characteristics. In clinical settings, an understanding of the mechanical characteristics, including radial force, is important in choosing a stent for each patient. © The Author(s) 2015.

X-Ray Spectroscopy of the Cluster of Galaxies Abell 1795 with XMM-Newton

NASA Technical Reports Server (NTRS)

Tamura, T.; Kaastra, J. S.; Peterson, J. R.; Paerels, F.; Mittaz, J. P. D.; Trudolyubov, S. P.; Stewart, G.; Fabian, A. C.; Mushotzky, R. F.; Lumb, D. H.

2000-01-01

The initial results from XMM-Newton observations of the rich cluster of galaxies Abell 1795 are presented. The spatially-resolved X-ray spectra taken by the European Photon Imaging Cameras (EPIC) show a temperature drop at a radius of - 200 kpc from the cluster center, indicating that the ICM is cooling. Both the EPIC and the Reflection Grating Spectrometers (RGS) spectra extracted from the cluster center can be described by an isothermal model with a temperature of approx. 4 keV. The volume emission measure of any cool component (less than 1 keV) is less than a few % of the hot component at the cluster center. A strong O VIII Lyman alpha line was detected with the RGS from the cluster core. The O abundance of the ICM is 0.2-0.5 times the solar value. The O to Fe ratio at the cluster center is 0.5 - 1.5 times the solar ratio.

Crop water productivity under increasing irrigation capacities in Romania. A spatially-explicit assessment of winter wheat and maize cropping systems in the southern lowlands of the country

NASA Astrophysics Data System (ADS)

Dogaru, Diana

2016-04-01

Improved water use efficiency in agriculture is a key issue in terms of sustainable management and consumption of water resources in the context of peoples' increasing food demands and preferences, economic growth and agricultural adaptation options to climate variability and change. Crop Water Productivity (CWP), defined as the ratio of yield (or value of harvested crop) to actual evapotranspiration or as the ratio of yield (or value of harvested crop) to volume of supplied irrigation water (Molden et al., 1998), is a useful indicator in the evaluation of water use efficiency and ultimately of cropland management, particularly in the case of regions affected by or prone to drought and where irrigation application is essential for achieving expected productions. The present study investigates the productivity of water in winter wheat and maize cropping systems in the Romanian Plain (49 594 sq. km), an important agricultural region in the southern part of the country which is increasingly affected by drought and dry spells (Sandu and Mateescu, 2014). The scope of the analysis is to assess the gains and losses in CWP for the two crops, by considering increased irrigated cropland and improved fertilization, these being the most common measures potentially and already implemented by the farmers. In order to capture the effects of such measures on agricultural water use, the GIS-based EPIC crop-growth model (GEPIC) (Williams et al., 1989; Liu, 2009) was employed to simulate yields, seasonal evapotranspiration from crops and volume of irrigation water in the Romanian Plain for the 2002 - 2013 interval with focus on 2007 and 2010, two representative years for dry and wet periods, respectively. The GEPIC model operates on a daily time step, while the geospatial input datasets for this analysis (e.g. climate data, soil classes and soil parameters, land use) were harmonized at 1km resolution grid cell. The sources of the spatial data are mainly the national profile agencies/institutes, providing the data at fine resolutions. The increased irrigated area was accounted according to the reported increased percentages of the irrigated area out of the total area equipped for irrigation, as an expected outcome of public irrigation systems rehabilitation schemes (MADR, 2011), while the optimum Nitrogen fertilizer rates for wheat and maize were established according to several field experiments made on irrigated and rain-fed wheat and maize plots in south Romania (Hera and Borlan, 1980). The effects of such farming measures on yields were compared to a baseline condition given by actual irrigated area and fertilization rates. The preliminary results show that potential gains in CWP could be obtained through improved fertilizer management and water allocation in winter wheat cropping systems, particularly in the dry periods, while in maize cropping systems CWP is more sensitive to water than to optimum fertilization rates. Irrigation water supply increases the stability of yields in both cropping systems, although regional differences can be observed across the study area, thus augmenting the relevance and the need for investigations on sustainable use of irrigation water in Romania. As such, this study could represent an information base for further analyses on yield potential under current and future climatic conditions, on impacts of land use patterns and farming practices on crop production in Romania, etc. Keywords: agricultural water use, crop water productivity, irrigation water, GEPIC, Romania References: Molden, D.J., Sakthivadivel, R., Perry, C.J., de Fraiture, C., Kloezen, W.H. (1998). Indicators for comparing performance of irrigated agricultural systems, Research Report 20, IWMI: Colombo, Sri Lanka. Sandu, I., Mateescu E. (2014). Current and prospective climate changes in Romania (in Romanian), in vol. Climate change: a major challenge for research in agriculture (ed. Saulescu, N.), Romanian Academy Publishing House, 17-36. Williams, J.R., Jones, C.A., Kiniry, J.R., Spanel, D.A. (1989). The EPIC crop growth model. Trans. ASAE 32 (2), 497-511. Liu, J. (2009). A GIS-based tool for modelling large-scale crop-water relations, Environmental Modelling & Software, 24, 411-422. MADR (Ministry of Agriculture and Rural Development), (2011). Rehabilitation and reform in the irrigation sector. Strategy of investment in the irrigation sector (in Romanian), Fidman Merk at., Bucharest, http://old.madr.ro/pages/strategie/strategie-investitii-irigatii.pdf. Hera, C., Borlan, Z. (1980). Guide for fertilization planning (in Romanian), 2nd edition, CERES Publishing House, Bucharest, Romania, 341p.

BEAMLINE-CONTROLLED STEERING OF SOURCE-POINT ANGLE AT THE ADVANCED PHOTON SOURCE

DOE Office of Scientific and Technical Information (OSTI.GOV)

Emery, L.; Fystro, G.; Shang, H.

An EPICS-based steering software system has been implemented for beamline personnel to directly steer the angle of the synchrotron radiation sources at the Advanced Photon Source. A script running on a workstation monitors "start steering" beamline EPICS records, and effects a steering given by the value of the "angle request" EPICS record. The new system makes the steering process much faster than before, although the older steering protocols can still be used. The robustness features of the original steering remain. Feedback messages are provided to the beamlines and the accelerator operators. Underpinning this new steering protocol is the recent refinementmore » of the global orbit feedback process whereby feedforward of dipole corrector set points and orbit set points are used to create a local steering bump in a rapid and seamless way.« less

The correlation of methylation levels measured using Illumina 450K and EPIC BeadChips in blood samples

PubMed Central

Logue, Mark W; Smith, Alicia K; Wolf, Erika J; Maniates, Hannah; Stone, Annjanette; Schichman, Steven A; McGlinchey, Regina E; Milberg, William; Miller, Mark W

2017-01-01

Aim: We examined concordance of methylation levels across the Illumina Infinium HumanMethylation450 BeadChip and the Infinium MethylationEPIC BeadChip. Methods: We computed the correlation for 145 whole blood DNA samples at each of the 422,524 CpG sites measured by both chips. Results: The correlation at some sites was high (up to r = 0.95), but many sites had low correlation (55% had r < 0.20). The low correspondence between 450K and EPIC measured methylation values at many loci was largely due to the low variability in methylation values for the majority of the CpG sites in blood. Conclusion: Filtering out probes based on the observed correlation or low variability may increase reproducibility of BeadChip-based epidemiological studies. PMID:28809127

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tomopy is a Python toolbox to perform x-ray data processing, image reconstruction and data exchange tasks at synchrotron facilities. The dependencies of the software are currently as follows: -Python related python standard library (http://docs.python.org/2/library/) numpy (http://www.numpy.org/) scipy (http://scipy.org/) matplotlib (http://matplotlip.org/) sphinx (http://sphinx-doc.org) pil (http://www.pythonware.com/products/pil/) pyhdf (http://pysclint.sourceforge.net/pyhdf/) h5py (http://www.h5py.org) pywt (http://www.pybytes.com/pywavelets/) file.py (https://pyspec.svn.sourceforge.net/svnroot/pyspec/trunk/pyspec/ccd/files.py) -C/C++ related: gridec (anonymous?? C-code written back in 1997 that uses standard C library) fftw (http://www.fftw.org/) tomoRecon (multi-threaded C++ verion of gridrec. Author: Mark Rivers from APS. http://cars9.uchicago.edu/software/epics/tomoRecon.html) epics (http://www.aps.anl.gov/epics/)

Estimation of leaf area index and its sunlit portion from DSCOVR EPIC data: Theoretical basis

PubMed Central

Yang, Bin; Knyazikhin, Yuri; Mõttus, Matti; Rautiainen, Miina; Stenberg, Pauline; Yan, Lei; Chen, Chi; Yan, Kai; Choi, Sungho; Park, Taejin; Myneni, Ranga B.

2017-01-01

This paper presents the theoretical basis of the algorithm designed for the generation of leaf area index and diurnal course of its sunlit portion from NASA’s Earth Polychromatic Imaging Camera (EPIC) onboard NOAA’s Deep Space Climate Observatory (DSCOVR). The Look-up-Table (LUT) approach implemented in the MODIS operational LAI/FPAR algorithm is adopted. The LUT, which is the heart of the approach, has been significantly modified. First, its parameterization incorporates the canopy hot spot phenomenon and recent advances in the theory of canopy spectral invariants. This allows more accurate decoupling of the structural and radiometric components of the measured Bidirectional Reflectance Factor (BRF), improves scaling properties of the LUT and consequently simplifies adjustments of the algorithm for data spatial resolution and spectral band compositions. Second, the stochastic radiative transfer equations are used to generate the LUT for all biome types. The equations naturally account for radiative effects of the three-dimensional canopy structure on the BRF and allow for an accurate discrimination between sunlit and shaded leaf areas. Third, the LUT entries are measurable, i.e., they can be independently derived from both below canopy measurements of the transmitted and above canopy measurements of reflected radiation fields. This feature makes possible direct validation of the LUT, facilitates identification of its deficiencies and development of refinements. Analyses of field data on canopy structure and leaf optics collected at 18 sites in the Hyytiälä forest in southern boreal zone in Finland and hyperspectral images acquired by the EO-1 Hyperion sensor support the theoretical basis. PMID:28867834

I am Joaquin. Yo Soy Joaquin. An Epic Poem with a Chronology of People and Events in Mexican and Mexican American History.

ERIC Educational Resources Information Center

Gonzales, Rodolfo

Both Spanish and English versions of the epic poem "I Am Joaquin" are given in this book. "I Am Joaquin" is the first work of poetry to be published by Chicanos for Chicanos. It is a historical essay of the greatness and weakness of the Chicano people. Their psychological wounds, cultural genocide, social castration, nobility, courage,…

Health-related quality of life after robot-assisted radical prostatectomy compared with laparoscopic radical prostatectomy.

PubMed

Koike, Hiroyuki; Kohjimoto, Yasuo; Iba, Akinori; Kikkawa, Kazuro; Yamashita, Shimpei; Iguchi, Takashi; Matsumura, Nagahide; Hara, Isao

2017-09-01

The objective of this study is to compare the quality of life (QOL) outcomes between laparoscopic radical prostatectomy (LRP) and robot-assisted radical prostatectomy (RARP). Between July 2007 and July 2013, 229 patients with localized prostate cancer underwent LRP while 105 patients with localized prostate cancer underwent RARP between December 2012 and August 2014. We evaluated their QOL using the 8-item Short-Form Health Survey (SF-8) and Expanded Prostate Cancer Index of Prostate (EPIC) questionnaires at preoperative and at postoperative 3, 6 and 12 months. In the LRP and RARP groups, over 80 and 90% of patients answered questionnaires at each follow-up time, respectively. At baseline QOL of EPIC and SF-8, there was no significant difference between LRP and RARP groups. At postoperative 3 months, Physical and Mental Components of SF-8 and Urinary Summary (U), all Urinary Subscales, Sexual Function and Bowel Function of EPIC showed significantly better scores in RARP group than in LRP group. At postoperative 6 and 12 months, there were no differences between LRP and RARP groups in terms of all QOL scores. RARP group showed better scores in SF-8 as well as urinary and sexual function of EPIC at postoperative-3 months. These differences disappeared at postoperative 6 and 12 months.

NEW EPICS/RTEMS IOC BASED ON ALTERA SOC AT JEFFERSON LAB

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yan, Jianxun; Seaton, Chad; Allison, Trent L.

A new EPICS/RTEMS IOC based on the Altera System-on-Chip (SoC) FPGA is being designed at Jefferson Lab. The Altera SoC FPGA integrates a dual ARM Cortex-A9 Hard Processor System (HPS) consisting of processor, peripherals and memory interfaces tied seamlessly with the FPGA fabric using a high-bandwidth interconnect backbone. The embedded Altera SoC IOC has features of remote network boot via U-Boot from SD card or QSPI Flash, 1Gig Ethernet, 1GB DDR3 SDRAM on HPS, UART serial ports, and ISA bus interface. RTEMS for the ARM processor BSP were built with CEXP shell, which will dynamically load the EPICS applications atmore » runtime. U-Boot is the primary bootloader to remotely load the kernel image into local memory from a DHCP/TFTP server over Ethernet, and automatically run RTEMS and EPICS. The first design of the SoC IOC will be compatible with Jefferson Lab’s current PC104 IOCs, which have been running in CEBAF 10 years. The next design would be mounting in a chassis and connected to a daughter card via standard HSMC connectors. This standard SoC IOC will become the next generation of low-level IOC for the accelerator controls at Jefferson Lab.« less

XMM-Newton observation of the Coma Galaxy cluster. The temperature structure in the central region

NASA Astrophysics Data System (ADS)

Arnaud, M.; Aghanim, N.; Gastaud, R.; Neumann, D. M.; Lumb, D.; Briel, U.; Altieri, B.; Ghizzardi, S.; Mittaz, J.; Sasseen, T. P.; Vestrand, W. T.

2001-01-01

We present a temperature map and a temperature profile of the central part (r < 20' or 1/4 virial radius) of the Coma cluster. We combined 5 overlapping pointings made with XMM/EPIC/MOS and extracted spectra in boxes of 3.5'x3.5'. The temperature distribution around the two central galaxies is remarkably homogeneous (r<10'), contrary to previous ASCA results, suggesting that the core is actually in a relaxed state. At larger distance from the cluster center we do see evidence for recent matter accretion. We confirm the cool area in the direction of NGC 4921, probably due to gas stripped from an infalling group. We find indications of a hot front in the South West, in the direction of NGC 4839, probably due to an adiabatic compression. Based on observations obtained with XMM-Newton, an ESA science mission with instruments and contributions directly funded by ESA Member States and the USA (NASA). EPIC was developed by the EPIC Consortium led by the Principal Investigator, Dr. M. J. L. Turner. The consortium comprises the following Institutes: University of Leicester, University of Birmingham, (UK); CEA/Saclay, IAS Orsay, CESR Toulouse, (France); IAAP Tuebingen, MPE Garching, (Germany); IFC Milan, ITESRE Bologna, IAUP Palermo, Italy. EPIC is funded by: PPARC, CEA, CNES, DLR and ASI.

A hybrid framework for assessing maize drought vulnerability in Sub-Saharan Africa

NASA Astrophysics Data System (ADS)

Kamali, B.; Abbaspour, K. C.; Wehrli, B.; Yang, H.

2017-12-01

Drought has devastating impacts on crop yields. Quantifying drought vulnerability is the first step to better design of mitigation policies. The vulnerability of crop yield to drought has been assessed with different methods, however they lack a standardized base to measure its components and a procedure that facilitates spatial and temporal comparisons. This study attempts to quantify maize drought vulnerability through linking the Drought Exposure Index (DEI) to the Crop Failure Index (CFI). DEI and CFI were defined by fitting probability distribution functions to precipitation and maize yield respectively. To acquire crop drought vulnerability index (CDVI), DEI and CFI were combined in a hybrid framework which classifies CDVI with the same base as DEI and CFI. The analysis were implemented on Sub-Saharan African countries using maize yield simulated with the Environmental Policy Integrated Climate (EPIC) model at 0.5° resolution. The model was coupled with the Sequential Uncertainty Fitting algorithm for calibration at country level. Our results show that Central Africa and those Western African countries located below the Sahelian strip receive higher amount of precipitation, but experience high crop failure. Therefore, they are identified as more vulnerable regions compared to countries such as South Africa, Tanzania, and Kenya. We concluded that our hybrid approach complements information on crop drought vulnerability quantification and can be applied to different regions and scales.

Risk Assessment of Maize Drought Disaster in Agro-Pastoral Transitional Zone in North China

NASA Astrophysics Data System (ADS)

Jia, H.; Pan, D.

2017-12-01

Agricultural drought is one of the focuses of global concern and one of the natural disasters that affect the agriculture production mostly in China. Farming-pastoral zones in China are located in the monsoon fringe area, precipitation of which is extremely unstable, and drought occurs frequently. The agro-pastoral transitional zone in North China is one of the main producing areas of northern spring maize in northern China, and maize is the second largest grain crop in the region. An assessment of the risk of drought disaster in this region is therefore important in ensuring a reduction in such disasters and an increase in food security. A risk assessment model, EPIC (Environmental Policy Integrated Climate) model, for maize drought disasters based on the Erosion Productivity Impact Calculator crop model is proposed for areas with the topographic characteristics of agro-pastoral transitional zone in North China. The results showed that the hazard risk level for the maize zone of agro-pastoral transitional zone in North China is generally high. Most hazard index values were between 0.4 and 0.5, accounting for 48.77% of total study area. The high-risk areas were mainly distributed in Ordos Plateau (South of Inner Mongolia Autonomous region), South of Ningxia Hui Autonomous Region and Center of Gansu Province. These results provide a scientific basis and support for the reduction of agricultural drought disasters and an increase in food security in the agro-pastoral transitional zone in North China.

SERVER DEVELOPMENT FOR NSLS-II PHYSICS APPLICATIONS AND PERFORMANCE ANALYSIS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shen, G.; Kraimer, M.

2011-03-28

The beam commissioning software framework of NSLS-II project adopts a client/server based architecture to replace the more traditional monolithic high level application approach. The server software under development is available via an open source sourceforge project named epics-pvdata, which consists of modules pvData, pvAccess, pvIOC, and pvService. Examples of two services that already exist in the pvService module are itemFinder, and gather. Each service uses pvData to store in-memory transient data, pvService to transfer data over the network, and pvIOC as the service engine. The performance benchmarking for pvAccess and both gather service and item finder service are presented inmore » this paper. The performance comparison between pvAccess and Channel Access are presented also. For an ultra low emittance synchrotron radiation light source like NSLS II, the control system requirements, especially for beam control are tight. To control and manipulate the beam effectively, a use case study has been performed to satisfy the requirement and theoretical evaluation has been performed. The analysis shows that model based control is indispensable for beam commissioning and routine operation. However, there are many challenges such as how to re-use a design model for on-line model based control, and how to combine the numerical methods for modeling of a realistic lattice with the analytical techniques for analysis of its properties. To satisfy the requirements and challenges, adequate system architecture for the software framework for beam commissioning and operation is critical. The existing traditional approaches are self-consistent, and monolithic. Some of them have adopted a concept of middle layer to separate low level hardware processing from numerical algorithm computing, physics modelling, data manipulating and plotting, and error handling. However, none of the existing approaches can satisfy the requirement. A new design has been proposed by introducing service oriented architecture technology, and client interface is undergoing. The design and implementation adopted a new EPICS implementation, namely epics-pvdata [9], which is under active development. The implementation of this project under Java is close to stable, and binding to other language such as C++ and/or Python is undergoing. In this paper, we focus on the performance benchmarking and comparison for pvAccess and Channel Access, the performance evaluation for 2 services, gather and item finder respectively.« less

EPICS SCA CLIENTS ON THE .NET X64 PLATFORM

DOE Office of Scientific and Technical Information (OSTI.GOV)

Timossi, Chris; Nishimura, Hiroshi

2006-10-19

We have developed a .NET assembly, which we call SCA.NET,which we have been using for building EPICS based control roomapplications at the Advanced Light Source (ALS). In this paper we reporton our experiences building a 64-bit version of SCA.NET and theunderlying channel access libraries for Windows XP x64 (using a dual coreAMD Athlon CPU). We also report on our progress in building newaccelerator control applications for this environment.

The K2-HERMES Survey. I. Planet-candidate Properties from K2 Campaigns 1–3

NASA Astrophysics Data System (ADS)

Wittenmyer, Robert A.; Sharma, Sanjib; Stello, Dennis; Buder, Sven; Kos, Janez; Asplund, Martin; Duong, Ly; Lin, Jane; Lind, Karin; Ness, Melissa; Zwitter, Tomaz; Horner, Jonathan; Clark, Jake; Kane, Stephen R.; Huber, Daniel; Bland-Hawthorn, Joss; Casey, Andrew R.; De Silva, Gayandhi M.; D’Orazi, Valentina; Freeman, Ken; Martell, Sarah; Simpson, Jeffrey D.; Zucker, Daniel B.; Anguiano, Borja; Casagrande, Luca; Esdaile, James; Hon, Marc; Ireland, Michael; Kafle, Prajwal R.; Khanna, Shourya; Marshall, J. P.; Saddon, Mohd Hafiz Mohd; Traven, Gregor; Wright, Duncan

2018-02-01

Accurate and precise radius estimates of transiting exoplanets are critical for understanding their compositions and formation mechanisms. To know the planet, we must know the host star in as much detail as possible. We present first results from the K2-HERMES project, which uses the HERMES multi-object spectrograph on the Anglo-Australian Telescope to obtain R ∼ 28000 spectra of up to 360 stars in one exposure. This ongoing project aims to derive self-consistent spectroscopic parameters for about half of K2 target stars. We present complete stellar parameters and isochrone-derived masses and radii for 46 stars hosting 57 K2 candidate planets in Campaigns 1–3. Our revised host-star radii cast severe doubt on three candidate planets: EPIC 201407812.01, EPIC 203070421.01, and EPIC 202843107.01, all of which now have inferred radii well in excess of the largest known inflated Jovian planets.

[Inspired by Apollo and Asclepio's sons in Homer and Virgil].

PubMed

Merlino, R L

1989-01-01

Important passages of the Homeric and Virgilian epic are regarding the art of divination and the medical science, and underline contextually the figures of the fortune teller and that of the physician. Two roles are associated to one matrix: heroic-aristocratic or royal-sacerdotal. In Homer's epic it is possible to single out surgical and phytotherapeutic knowledge together with remedies for diseases aroused by a solar god, like Apollo is, gods' physician. Pitiful divinities comfort those who have been struck by demoniac and mysterious forms. On the contrary, in Virgil's epic a symbiosis is carried out between the physician's figure and the priest's one, with the very vague outlines of the two arts and however, overloaded by factors which are typically Virgilian. Unusual form of incubation of the Greek rituals has been transplanted in the Latin matrix; and moreover there is a constant recall of words used in their most antique meaning.

Health-Related Quality of Life After Single-Fraction High-Dose-Rate Brachytherapy and Hypofractionated External Beam Radiotherapy for Prostate Cancer

DOE Office of Scientific and Technical Information (OSTI.GOV)

Morton, Gerard C., E-mail: gerard.morton@sunnybrook.ca; Loblaw, D. Andrew; Chung, Hans

Purpose: To investigate the change in health-related quality of life for men after high-dose-rate brachytherapy and external beam radiotherapy for prostate cancer and the factors associated with this change. Methods and Materials: Eligible patients had clinically localized intermediate-risk prostate cancer. The patients received high-dose-rate brachytherapy as a single 15-Gy implant, followed by external beam radiotherapy to 37.5 Gy in 15 fractions. The patients were monitored prospectively for toxicity (Common Terminology Criteria for Adverse Events, version 3.0) and health-related quality of life (Expanded Prostate Cancer Index Composite [EPIC]). The proportion of patients developing a clinically significant difference in the EPIC domainmore » score (minimally important difference of >0.5 standard deviation) was determined and correlated with the baseline clinical and dosimetric factors. The study accrued 125 patients, with a median follow-up of 24 months. Results: By 24 months, 23% had Grade 2 urinary toxicity and only 5% had Grade 2 bowel toxicity, with no Grade 3 toxicity. The proportion of patients reporting a significant decrease in EPIC urinary, bowel, sexual, and hormonal domain scores was 53%, 51%, 45%, and 40% at 12 months and 57%, 65%, 51%, and 30% at 24 months, respectively. The proportion with a >1 standard deviation decrease in the EPIC urinary, bowel, sexual, and hormonal domain scores was 38%, 36%, 24%, and 20% at 12 months and 46%, 48%, 19%, and 8% at 24 months, respectively. On multivariate analysis, the dose to 10% of the urethra was associated with a decreasing EPIC urinary domain score (p = .0089) and, less strongly (p = .0312) with a decreasing hormonal domain score. No association was found between the prostate volume, bladder dose, or high-dose volume and urinary health-related quality of life. A high baseline International Index of Erectile Function score was associated (p = .0019) with a decreasing sexual domain score. The optimal maximal dose to 10% of the urethra cutpoint for urinary health-related quality of life was 120% of the prescription dose. Conclusion: EPIC was a more sensitive tool for detecting the effects on function and bother than were the generic toxicity scales. The urethral dose had the strongest association with a deteriorating urinary quality of life.« less

Macronutrient, vitamin, and mineral intakes in the EPIC-Germany cohorts.

PubMed

Schulze, M B; Linseisen, J; Kroke, A; Boeing, H

2001-01-01

This article presents intakes of nutrients in the EPIC-Heidelberg and the EPIC-Potsdam (European Investigation into Cancer and Nutrition) studies. Estimates are based on standardized 24-hour dietary recalls. Recalls from 1,013 men and 1,078 women in Heidelberg and from 1,032 men and 898 women in Potsdam were included in the analysis. The estimated nutrient intake was based on the German Food Code and Nutrient Data Base version II.3. Analyses were carried out stratified by sex and weighted for the day of the week and age. Men in Potsdam reported significantly higher intakes of energy (mean Potsdam = 10,718 kJ, mean Heidelberg = 10,387 kJ) and higher intakes of vitamins and minerals as compared with men in Heidelberg. However, Heidelberg men consumed more alcohol, alpha-tocopherol, phosphorus, calcium, and magnesium. Potsdam women reported lower energy (mean Potsdam = 7,537 kJ, mean Heidelberg = 7,855 kJ), alcohol, and cholesterol intakes as compared with Heidelberg women. Vitamin and mineral intakes were lower too, except for retinol and ascorbic acid. The intakes of energy and most nutrients observed in the Potsdam and Heidelberg study populations were within the range reported from other German studies. The observed differences between both study populations indicate different dietary patterns, increasing the exposure variation in the EPIC study. Copyright 2001 S. Karger AG, Basel

California Diploma Project Technical Report II: Alignment Study--Alignment Study of the Health Sciences and Medical Technology Draft Standards and California's Exit Level Common Core State Standards

ERIC Educational Resources Information Center

McGaughy, Charis; de Gonzalez, Alicia

2012-01-01

The California Department of Education is in the process of revising the Career and Technical Education (CTE) Model Curriculum Standards. The Educational Policy Improvement Center (EPIC) conducted an investigation of the draft version of the Health Sciences and Medical Technology Standards (Health Science). The purpose of the study is to…

The improved physical activity index for measuring physical activity in EPIC Germany.

PubMed

Wientzek, Angelika; Vigl, Matthäus; Steindorf, Karen; Brühmann, Boris; Bergmann, Manuela M; Harttig, Ulrich; Katzke, Verena; Kaaks, Rudolf; Boeing, Heiner

2014-01-01

In the European Investigation into Cancer and Nutrition study (EPIC), physical activity (PA) has been indexed as a cross-tabulation between PA at work and recreational activity. As the proportion of non-working participants increases, other categorization strategies are needed. Therefore, our aim was to develop a valid PA index for this population, which will also be able to express PA continuously. In the German EPIC centers Potsdam and Heidelberg, a clustered sample of 3,766 participants was re-invited to the study center. 1,615 participants agreed to participate and 1,344 participants were finally included in this study. PA was measured by questionnaires on defined activities and a 7-day combined heart rate and acceleration sensor. In a training sample of 433 participants, the Improved Physical Activity Index (IPAI) was developed. Its performance was evaluated in a validation sample of 911 participants and compared with the Cambridge Index and the Total PA Index. The IPAI consists of items covering five areas including PA at work, sport, cycling, television viewing, and computer use. The correlations of the IPAI with accelerometer counts in the training and validation sample ranged r = 0.40-0.43 and with physical activity energy expenditure (PAEE) r = 0.33-0.40 and were higher than for the Cambridge Index and the Total PA Index previously applied in EPIC. In non-working participants the IPAI showed higher correlations than the Cambridge Index and the Total PA Index, with r = 0.34 for accelerometer counts and r = 0.29 for PAEE. In conclusion, we developed a valid physical activity index which is able to express PA continuously as well as to categorize participants according to their PA level. In populations with increasing rates of non-working people the performance of the IPAI is better than the established indices used in EPIC.

The Improved Physical Activity Index for Measuring Physical Activity in EPIC Germany

PubMed Central

Wientzek, Angelika; Vigl, Matthäus; Steindorf, Karen; Brühmann, Boris; Bergmann, Manuela M.; Harttig, Ulrich; Katzke, Verena; Kaaks, Rudolf; Boeing, Heiner

2014-01-01

In the European Investigation into Cancer and Nutrition study (EPIC), physical activity (PA) has been indexed as a cross-tabulation between PA at work and recreational activity. As the proportion of non-working participants increases, other categorization strategies are needed. Therefore, our aim was to develop a valid PA index for this population, which will also be able to express PA continuously. In the German EPIC centers Potsdam and Heidelberg, a clustered sample of 3,766 participants was re-invited to the study center. 1,615 participants agreed to participate and 1,344 participants were finally included in this study. PA was measured by questionnaires on defined activities and a 7-day combined heart rate and acceleration sensor. In a training sample of 433 participants, the Improved Physical Activity Index (IPAI) was developed. Its performance was evaluated in a validation sample of 911 participants and compared with the Cambridge Index and the Total PA Index. The IPAI consists of items covering five areas including PA at work, sport, cycling, television viewing, and computer use. The correlations of the IPAI with accelerometer counts in the training and validation sample ranged r = 0.40–0.43 and with physical activity energy expenditure (PAEE) r = 0.33–0.40 and were higher than for the Cambridge Index and the Total PA Index previously applied in EPIC. In non-working participants the IPAI showed higher correlations than the Cambridge Index and the Total PA Index, with r = 0.34 for accelerometer counts and r = 0.29 for PAEE. In conclusion, we developed a valid physical activity index which is able to express PA continuously as well as to categorize participants according to their PA level. In populations with increasing rates of non-working people the performance of the IPAI is better than the established indices used in EPIC. PMID:24642812

A new tool for converting food frequency questionnaire data into nutrient and food group values: FETA research methods and availability

PubMed Central

Mulligan, Angela A; Luben, Robert N; Bhaniani, Amit; Parry-Smith, David J; O'Connor, Laura; Khawaja, Anthony P; Forouhi, Nita G; Khaw, Kay-Tee

2014-01-01

Objectives To describe the research methods for the development of a new open source, cross-platform tool which processes data from the European Prospective Investigation into Cancer and Nutrition Norfolk Food Frequency Questionnaire (EPIC-Norfolk FFQ). A further aim was to compare nutrient and food group values derived from the current tool (FETA, FFQ EPIC Tool for Analysis) with the previously validated but less accessible tool, CAFÉ (Compositional Analyses from Frequency Estimates). The effect of text matching on intake data was also investigated. Design Cross-sectional analysis of a prospective cohort study—EPIC-Norfolk. Setting East England population (city of Norwich and its surrounding small towns and rural areas). Participants Complete FFQ data from 11 250 men and 13 602 women (mean age 59 years; range 40–79 years). Outcome measures Nutrient and food group intakes derived from FETA and CAFÉ analyses of EPIC-Norfolk FFQ data. Results Nutrient outputs from FETA and CAFÉ were similar; mean (SD) energy intake from FETA was 9222 kJ (2633) in men, 8113 kJ (2296) in women, compared with CAFÉ intakes of 9175 kJ (2630) in men, 8091 kJ (2298) in women. The majority of differences resulted in one or less quintile change (98.7%). Only mean daily fruit and vegetable food group intakes were higher in women than in men (278 vs 212 and 284 vs 255 g, respectively). Quintile changes were evident for all nutrients, with the exception of alcohol, when text matching was not executed; however, only the cereals food group was affected. Conclusions FETA produces similar nutrient and food group values to the previously validated CAFÉ but has the advantages of being open source, cross-platform and complete with a data-entry form directly compatible with the software. The tool will facilitate research using the EPIC-Norfolk FFQ, and can be customised for different study populations. PMID:24674997

Costs and financing of routine immunization: Approach and selected findings of a multi-country study (EPIC).

PubMed

Brenzel, Logan; Young, Darwin; Walker, Damian G

2015-05-07

Few detailed facility-based costing studies of routine immunization (RI) programs have been conducted in recent years, with planners, managers and donors relying on older information or data from planning tools. To fill gaps and improve quality of information, a multi-country study on costing and financing of routine immunization and new vaccines (EPIC) was conducted in Benin, Ghana, Honduras, Moldova, Uganda and Zambia. This paper provides the rationale for the launch of the EPIC study, as well as outlines methods used in a Common Approach on facility sampling, data collection, cost and financial flow estimation for both the routine program and new vaccine introduction. Costing relied on an ingredients-based approach from a government perspective. Estimating incremental economic costs of new vaccine introduction in contexts with excess capacity are highlighted. The use of more disaggregated System of Health Accounts (SHA) coding to evaluate financial flows is presented. The EPIC studies resulted in a sample of 319 primary health care facilities, with 65% of facilities in rural areas. The EPIC studies found wide variation in total and unit costs within each country, as well as between countries. Costs increased with level of scale and socio-economic status of the country. Governments are financing an increasing share of total RI financing. This study provides a wealth of high quality information on total and unit costs and financing for RI, and demonstrates the value of in-depth facility approaches. The paper discusses the lessons learned from using a standardized approach, as well as proposes further areas of methodology development. The paper discusses how results can be used for resource mobilization and allocation, improved efficiency of services at the country level, and to inform policies at the global level. Efforts at routinizing cost analysis to support sustainability efforts would be beneficial. Copyright © 2015 Elsevier Ltd. All rights reserved.

Simulation of Long-term Yield and Soil Water Consumption in Apple Orchards on the Loess Plateau, China, in Response to Fertilization.

PubMed

Peng, Xingxing; Guo, Zheng; Zhang, Yujiao; Li, Jun

2017-07-14

The Loess Plateau, China, is the world's largest apple-producing region, and over 80% of the orchards are in rainfed (dryland) areas. Desiccation of the deep soil layer under dryland apple orchards is the main stressor of apple production in this region. Fertilization is a factor that causes soil desiccation in dryland apple orchards. Given its applicability and precision validations, the Environmental Policy Integrated Climate (EPIC) model was used to simulate the dynamics of fruit yield and deep soil desiccation in apple orchards under six fertilization treatments. During the 45 years of study, the annual fruit yield under the fertilization treatments initially increased and then decreased in a fluctuating manner, and the average fruit yields were 24.42, 27.27, 28.69, 29.63, 30.49 and 29.43 t/ha in these respective fertilization treatments. As fertilization increased, yield of the apple orchards increased first and then declined,desiccation of the soil layers occurred earlier and extended deeper, and the average annual water consumption, over-consumption and water use efficiency increased as fertilization increased. In terms of apple yields, sustainable soil water use, and economic benefits, the most appropriate fertilization rate for drylands in Luochuan is 360-480 kg/ha N and 180-240 kg/ha P.

Enlisted Personnel Individualized Career System (EPICS) and Conventional Personnel System (CPS): Preliminary Comparison of Training and Ancillary Costs

DTIC Science & Technology

1983-04-01

NUMNIIIR(e) A. M. Megrditchian S. PERFORMING ORGANIZATION NAME ANO ADDRESS 10. PROGRAM ELEMENT. PROJECT, TASK AREA & WORK UNIT NUMUERS Navy Personnel...individualized career system (EPICS) program provides an alternative that strives for these advantages. It defers formal school assignment to follow sea duty...enabling the seaman to understand and adjust to the shipboard environment as well as prepare for an opt imall y- phased, formal, shore-based schools program

X-RAY DIAGNOSTICS OF THERMAL CONDITIONS OF THE HOT PLASMAS IN THE CENTAURUS CLUSTER

DOE Office of Scientific and Technical Information (OSTI.GOV)

Takahashi, I.; Makishima, K.; Kitaguchi, T.

2009-08-10

X-ray data of the Centaurus cluster, obtained with XMM-Newton for 45 ks, were analyzed. Deprojected EPIC spectra from concentric thin-shell regions were reproduced equally well by a single-phase plasma emission model, or by a two-phase model developed by ASCA, both incorporating cool (1.7-2.0 keV) and hot ({approx} 4 keV) plasma temperatures. However, EPIC spectra with higher statistics, accumulated over three-dimensional thick-shell regions, were reproduced better by the two-phase model than by the singe-phase one. Therefore, hot and cool plasma phases are inferred to co-exist in the cluster core region within {approx} 70 kpc. The iron and silicon abundances of themore » plasma were reconfirmed to increase significantly toward the center, while that of oxygen was consistent with being radially constant. The implied nonsolar abundance ratios explain away the previously reported excess X-ray absorption from the central region. Although an additional cool ({approx} 0.7 keV) emission was detected within {approx} 20 kpc of the center, the RGS data gave tight upper limits on any emission with temperatures below {approx} 0.5 keV. These results are compiled into a magnetosphere model, which interprets the cool phase as confined within closed magnetic loops anchored to the cD galaxy. When combined with the so-called Rosner-Tucker-Vaiana mechanism which applies to solar coronae, this model can potentially explain basic properties of the cool phase, including its temperature and thermal stability.« less

Adherence to the Mediterranean diet and risk of bladder cancer in the EPIC cohort study.

PubMed

Buckland, G; Ros, M M; Roswall, N; Bueno-de-Mesquita, H B; Travier, N; Tjonneland, A; Kiemeney, L A; Sacerdote, C; Tumino, R; Ljungberg, B; Gram, I T; Weiderpass, E; Skeie, G; Malm, J; Ehrnström, R; Chang-Claude, J; Mattiello, A; Agnoli, C; Peeters, P H; Boutron-Ruault, M C; Fagherazzi, G; Clavel-Chapelon, F; Nilsson, L M; Amiano, P; Trichopoulou, A; Oikonomou, E; Tsiotas, K; Sánchez, M J; Overvad, K; Quirós, J R; Chirlaque, M D; Barricarte, A; Key, T J; Allen, N E; Khaw, K T; Wareham, N; Riboli, E; Kaaks, R; Boeing, H; Palli, D; Romieu, I; Romaguera, D; Gonzalez, C A

2014-05-15

There is growing evidence of the protective role of the Mediterranean diet (MD) on cancer. However, to date no epidemiological study has investigated the influence of the MD on bladder cancer. We evaluated the association between adherence to the MD and risk of urothelial cell bladder cancer (UCC), according to tumor aggressiveness, in the European Prospective Investigation into Cancer and Nutrition (EPIC). The analysis included 477,312 participants, recruited from ten European countries between 1991 and 2000. Information from validated dietary questionnaires was used to develop a relative Mediterranean diet score (rMED), including nine dietary components. Cox regression models were used to assess the effect of the rMED on UCC risk, while adjusting for dietary energy and tobacco smoking of any kind. Stratified analyses were performed by sex, BMI, smoking status, European region and age at diagnosis. During an average follow-up of 11 years, 1,425 participants (70.9% male) were diagnosed with a first primary UCC. There was a negative but non-significant association between a high versus low rMED score and risk of UCC overall (HR: 0.84 [95% CI 0.69, 1.03]) and risk of aggressive (HR: 0.88 [95% CI 0.61, 1.28]) and non-aggressive tumors (HR: 0.78 [95% CI 0.54, 1.14]). Although there was no effect modification in the stratified analyses, there was a significant 34% (p = 0.043) decreased risk of UCC in current smokers with a high rMED score. In EPIC, the MD was not significantly associated with risk of UCC, although we cannot exclude that a MD may reduce risk in current smokers. © 2013 UICC.

Consumption of fruits, vegetables and fruit juices and differentiated thyroid carcinoma risk in the European Prospective Investigation into Cancer and Nutrition (EPIC) study.

PubMed

Zamora-Ros, Raul; Béraud, Virginie; Franceschi, Silvia; Cayssials, Valerie; Tsilidis, Konstantinos K; Boutron-Ruault, Marie-Christine; Weiderpass, Elisabete; Overvad, Kim; Tjønneland, Anne; Eriksen, Anne K; Bonnet, Fabrice; Affret, Aurélie; Katzke, Verena; Kühn, Tilman; Boeing, Heiner; Trichopoulou, Antonia; Valanou, Elisavet; Karakatsani, Anna; Masala, Giovanna; Grioni, Sara; Santucci de Magistris, Maria; Tumino, Rosario; Ricceri, Fulvio; Skeie, Guri; Parr, Christine L; Merino, Susana; Salamanca-Fernández, Elena; Chirlaque, Maria-Dolores; Ardanaz, Eva; Amiano, Pilar; Almquist, Martin; Drake, Isabel; Hennings, Joakim; Sandström, Maria; Bueno-de-Mesquita, H B As; Peeters, Petra H; Khaw, Kay-Thee; Wareham, Nicholas J; Schmidt, Julie A; Perez-Cornago, Aurora; Aune, Dagfinn; Riboli, Elio; Slimani, Nadia; Scalbert, Augustin; Romieu, Isabelle; Agudo, Antonio; Rinaldi, Sabina

2018-02-01

Fruit and vegetable (F&V) intake is considered as probably protective against overall cancer risk, but results in previous studies are not consistent for thyroid cancer (TC). The purpose of this study is to examine the association between the consumption of fruits, vegetables, fruit juices and differentiated thyroid cancer risk within the European Prospective Investigation into Cancer and Nutrition (EPIC) study. The EPIC study is a cohort including over half a million participants, recruited between 1991 and 2000. During a mean follow-up of 14 years, 748 incident first primary differentiated TC cases were identified. F&V and fruit juice intakes were assessed through validated country-specific dietary questionnaires. Hazard ratios (HRs) and 95% confidence intervals (CIs) were estimated using Cox regression models adjusted for potential confounding factors. Comparing the highest versus lowest quartile of intake, differentiated TC risk was not associated with intakes of total F&V (HR: 0.89; 95% CI: 0.68-1.15; p-trend = 0.44), vegetables (HR: 0.89; 95% CI: 0.69-1.14; p-trend = 0.56), or fruit (HR: 1.00; 95% CI: 0.79-1.26; p-trend = 0.64). No significant association was observed with any individual type of vegetable or fruit. However, there was a positive borderline trend with fruit juice intake (HR: 1.23; 95% CI: 0.98-1.53; p-trend = 0.06). This study did not find any significant association between F&V intakes and differentiated TC risk; however a positive trend with fruit juice intake was observed, possibly related to its high sugar content. © 2017 UICC.

The small eye phenotype in the EPIC-Norfolk eye study: prevalence and visual impairment in microphthalmos and nanophthalmos.

PubMed

Day, Alexander C; Khawaja, Anthony P; Peto, Tunde; Hayat, Shabina; Luben, Robert; Broadway, David C; Khaw, Kay-Tee; Foster, Paul J

2013-01-01

To describe the prevalence and phenotypic characteristics of small eyes in the European Prospective Investigation of Cancer (EPIC)-Norfolk Eye Study. Community cross-sectional study. East England population (Norwich, Norfolk and surrounding area). 8033 participants aged 48-92 years old from the EPIC-Norfolk Eye Study, Norfolk, UK with axial length measurements. Participants underwent a standardised ocular examination including visual acuity (LogMAR), ocular biometry, non-contact tonometry, autorefraction and fundal photography. A small eye phenotype was defined as a participant with one or both eyes with axial length of <21 mm. Prevalence of small eyes, proportion with visual impairment, demographic and biometric factors. Ninety-six participants (1.20%, 95% CI 0.98% to 1.46%) had an eye with axial length less than 21 mm, of which 74 (77%) were women. Prevalence values for shorter axial lengths were <20 mm: 0.27% (0.18% to 0.41%); <19 mm: 0.17% (0.11% to 0.29%); <18 mm: 0.14% (0.08% to 0.25%). Two participants (2.1%) had low vision (presenting visual acuity >0.48 LogMAR) and one participant was blind (>1.3 LogMAR). The prevalence of unilateral visual impairment was higher in participants with a small eye. Multiple logistic regression modelling showed presence of a small eye to be significantly associated with shorter height, lower body mass index, higher systolic blood pressure and lower intraocular pressure. The prevalence of people with small eyes is higher than previously thought. While small eyes were more common in women, this appears to be related to shorter height and lower body mass index. Participants with small eyes were more likely to be blind or to have unilateral visual impairment.

The association of education with long-term weight change in the EPIC-PANACEA cohort.

PubMed

Rohrmann, S; Steinbrecher, A; Linseisen, J; Hermann, S; May, A; Luan, J; Ekelund, U; Overvad, K; Tjønneland, A; Halkjær, J; Fagherazzi, G; Boutron-Ruault, M-C; Clavel-Chapelon, F; Agnoli, C; Tumino, R; Masala, G; Mattiello, A; Ricceri, F; Travier, N; Amiano, P; Ardanaz, E; Chirlaque, M-D; Sanchez, M-J; Rodríguez, L; Nilsson, L M; Johansson, I; Hedblad, B; Rosvall, M; Lund, E; Braaten, T; Naska, A; Orfanos, P; Trichopoulou, A; van den Berg, S; Bueno-de-Mesquita, H B; Bergmann, M M; Steffen, A; Kaaks, R; Teucher, B; Wareham, N J; Khaw, K-T; Crowe, F L; Illner, A-K; Slimani, N; Gallo, V; Mouw, T; Norat, T; Peeters, P H M

2012-08-01

Cross-sectionally, educational attainment is strongly associated with the prevalence of obesity, but this association is less clear for weight change during adult life. The objective of this study is to examine the association between educational attainment and weight change during adult life in the European Prospective Investigation into Cancer and Nutrition (EPIC). EPIC is a cohort study with 361,467 participants and up to 10 years of follow-up. Educational attainment was categorized according to the highest obtained school level (primary school or less, vocational secondary training, other secondary education and university). Multivariate mixed-effects linear regression models were used to study education in relation to weight at age 20 years (self-reported), to annual change in weight between age 20 years and measured weight at recruitment, and to annual change in weight during follow-up time. Higher educational attainment was associated with on average a lower body mass index (BMI) at age 20 years and a lower increase in weight up to recruitment (highest vs lowest educational attainment in men: -60 g per year (95% confidence interval (CI) -80; -40), women -110 g per year (95% CI -130; -80)). Although during follow-up after recruitment an increase in body weight was observed in all educational levels, gain was lowest in men and women with a university degree (high vs low education -120 g per year (95% CI -150; -90) and -70 g per year (95% CI -90; -60), respectively). Existing differences in BMI between higher and lower educated individuals at early adulthood became more pronounced during lifetime, which possibly impacts on obesity-related chronic disease risk in persons with lower educational attainment.

Characterizing K2 Candidate Planetary Systems Orbiting Low-Mass Stars. I. Classifying Low-Mass Host Stars Observed During Campaigns 1-7

NASA Technical Reports Server (NTRS)

Dressing, Courtney D.; Newton, Elisabeth R.; Schlieder, Joshua E.; Charbomeau, David; Krutson, Heather A.; Vanderburg, Andrew; Sinukoff, Evan

2017-01-01

We present near-infrared spectra for 144 candidate planetary systems identified during Campaigns 1-7 of the NASA K2 Mission. The goal of the survey was to characterize planets orbiting low-mass stars, but our Infrared Telescope Facility/SpeX and Palomar/TripleSpec spectroscopic observations revealed that 49% of our targets were actually giant stars or hotter dwarfs reddened by interstellar extinction. For the 72 stars with spectra consistent with classification as cool dwarfs (spectral types K3-M4), we refined their stellar properties by applying empirical relations based on stars with interferometric radius measurements. Although our revised temperatures are generally consistent with those reported in the Ecliptic Plane Input Catalog (EPIC), our revised stellar radii are typically 0.13 solar radius (39%) larger than the EPIC values, which were based on model isochrones that have been shown to underestimate the radii of cool dwarfs. Our improved stellar characterizations will enable more efficient prioritization of K2 targets for follow-up studies.

Characterizing Resident Space Object Earthshine Signature Variability

NASA Astrophysics Data System (ADS)

Van Cor, Jared D.

There are three major sources of illumination on objects in the near Earth space environment: Sunshine, Moonshine, and Earthshine. For objects in this environment (satellites, orbital debris, etc.) known as Resident Space Objects (RSOs), the sun and the moon have consistently small illuminating solid angles and can be treated as point sources; this makes their incident illumination easily modeled. The Earth on the other hand has a large illuminating solid angle, is heterogeneous, and is in a constant state of change. The objective of this thesis was to characterize the impact and variability of observed RSO Earthshine on apparent magnitude signatures in the visible optical spectral region. A key component of this research was creating Earth object models incorporating the reflectance properties of the Earth. Two Earth objects were created: a homogeneous diffuse Earth object and a time sensitive heterogeneous Earth object. The homogeneous diffuse Earth object has a reflectance equal to the average global albedo, a standard model used when modeling Earthshine. The time sensitive heterogeneous Earth object was created with two material maps representative of the dynamic reflectance of the surface of the earth, and a shell representative of the atmosphere. NASA's Moderate-resolution Imaging Spectroradiometer (MODIS) Earth observing satellite product libraries, MCD43C1 global surface BRDF map and MOD06 global fractional cloud map, were utilized to create the material maps, and a hybridized version of the Empirical Line Method (ELM) was used to create the atmosphere. This dynamic Earth object was validated by comparing simulated color imagery of the Earth to that taken by: NASAs Earth Polychromatic Imaging Camera (EPIC) located on the Deep Space Climate Observatory (DSCOVR), and by MODIS located on the Terra satellite. The time sensitive heterogeneous Earth object deviated from MODIS imagery by a spectral radiance root mean square error (RMSE) of +/-14.86 [watts/m. 2sr?m]over a sample of ROIs. Further analysis using EPIC imagery found a total albedo difference of +0.03% and a cross correlation of 0.656. Also compared to EPIC imagery it was found our heterogeneous Earth model produced a reflected Earthshine radiance RMSE of +/-28 [watts/m. 2sr?m] incident on diffuse sphericalRSOs, specular spherical RSOs, and diffuse flat plate RSOs with an altitude of 1000km; this resulted in an apparent magnitude error of +/-0.28. Furthermore, it was found our heterogeneous Earthmodel produced a reflected Earthshine radiance RMSE of +/-68 [watts/m. 2sr?m] for specular flat plate RSOs withan altitude of 1000km; this resulted in an apparent magnitude error of +/-0.68. The Earth objects were used in a workflow with the Digital Imaging and Remote Sensing Image Generation (DIRSIG) tool to explore the impact of a range of characteristic RSO geometries, geographies, orientations, and materials on the signatures from an RSO due to Earthshine. An apparent magnitude was calculated and used to quantify RSO Earthshine signature variability; this is discussed in terms of the RMSE and maximum deviations of visible RSO Earthshine apparent magnitude signatures comparing the homogeneous Earth model to heterogeneous Earth model. The homogeneous diffuse Earth object was shown to approximate visible RSO Earthshine apparent magnitude signatures from spheres with a RMSE in reflected Earthshine apparent magnitude of +/-0.4 and a maximum apparent magnitude difference of 1.09 when compared to the heterogeneous Earth model. Similarly for diffuse flat plates, the visible RSO Earthshine apparent magnitude signature RMSE was shown to be +/-0.64, with a maximum apparent magnitude difference of 0.82. For specular flat plates, the visible RSO Earthshine apparent magnitude signature RMSE was shown to be +/-0.97 with maximum apparent magnitude difference of 2.26. This thesis explored only a portion of the parameter dependencies of Earth shine, but has enabled a preliminary understanding of visible RSO Earthshine signature variability and its geometric dependence. This research has demonstrated the impact of Earth heterogeneity on the observed apparent magnitude signatures of RSOs illuminated by Earthshine and the potential for error that comes with approximating the Earth as a diffuse homogeneous object.

A MySQL Based EPICS Archiver

DOE Office of Scientific and Technical Information (OSTI.GOV)

Christopher Slominski

2009-10-01

Archiving a large fraction of the EPICS signals within the Jefferson Lab (JLAB) Accelerator control system is vital for postmortem and real-time analysis of the accelerator performance. This analysis is performed on a daily basis by scientists, operators, engineers, technicians, and software developers. Archiving poses unique challenges due to the magnitude of the control system. A MySQL Archiving system (Mya) was developed to scale to the needs of the control system; currently archiving 58,000 EPICS variables, updating at a rate of 11,000 events per second. In addition to the large collection rate, retrieval of the archived data must also bemore » fast and robust. Archived data retrieval clients obtain data at a rate over 100,000 data points per second. Managing the data in a relational database provides a number of benefits. This paper describes an archiving solution that uses an open source database and standard off the shelf hardware to reach high performance archiving needs. Mya has been in production at Jefferson Lab since February of 2007.« less

Modern laparoscopy and the archery episode in the greatest epic of India: Mahabarata.

PubMed

Natarajan, K

2006-07-01

The laparoscopic surgeon is trained to acquire advanced skills to perform the complicated laparoscopic surgery of the target tissue in a three-dimensional (3D) space by viewing its two-dimensional (2D) video image. This technique finds its parallel in a very ancient archery episode portrayed in the longest and the greatest Indian epic, Mahabarata. In this epic, Arjuna, the master archer, is required to employ the strategy of aiming at the eye of a target fish rotating above his head by viewing its reflected image below in water; of course, all this to win the hand of a beautiful princess! Arjuna is so trained that he cannot but excel in focusing his attention on his target. A comparative study of the laparoscopic surgeon and the ancient master archer is done in this paper with a view to throwing light on the interesting similarities between the archer and the modern laparoscopic surgeon with respect to training methods, skills, and techniques.

Multipurpose Controller with EPICS integration and data logging: BPM application for ESS Bilbao

NASA Astrophysics Data System (ADS)

Arredondo, I.; del Campo, M.; Echevarria, P.; Jugo, J.; Etxebarria, V.

2013-10-01

This work presents a multipurpose configurable control system which can be integrated in an EPICS control network, this functionality being configured through a XML configuration file. The core of the system is the so-called Hardware Controller which is in charge of the control hardware management, the set up and communication with the EPICS network and the data storage. The reconfigurable nature of the controller is based on a single XML file, allowing any final user to easily modify and adjust the control system to any specific requirement. The selected Java development environment ensures a multiplatform operation and large versatility, even regarding the control hardware to be controlled. Specifically, this paper, focused on fast control based on a high performance FPGA, describes also an application approach for the ESS Bilbao's Beam Position Monitoring system. The implementation of the XML configuration file and the satisfactory performance outcome achieved are presented, as well as a general description of the Multipurpose Controller itself.

The NGC 4839 group falling into the Coma cluster observed by XMM-Newton

NASA Astrophysics Data System (ADS)

Neumann, D. M.; Arnaud, M.; Gastaud, R.; Aghanim, N.; Lumb, D.; Briel, U. G.; Vestrand, W. T.; Stewart, G. C.; Molendi, S.; Mittaz, J. P. D.

2001-01-01

We present here the first analysis of the XMM-Newton EPIC-MOS data of the galaxy group around NGC 4839, which lies at a projected distance to the Coma cluster center of 1.6h50-1 Mpc. In our analysis, which includes imaging, spectro-imaging and spectroscopy we find compelling evidence for the sub group being on its first infall onto the Coma cluster. The complex temperature structure around NGC 4839 is consistent with simulations of galaxies falling into a cluster environment. We see indications of a bow shock and of ram pressure stripping around NGC 4839. Furthermore our data reveal a displacement between NGC 4839 and the center of the hot gas in the group of about 300h50-1 kpc. With a simple approximation we can explain this displacement by the pressure force originating from the infall, which acts much stronger on the group gas than on the galaxies. Based on observations obtained with XMM-Newton, an ESA science mission with instruments and contributions directly funded by ESA Member States and the USA (NASA). EPIC was developed by the EPIC Consortium led by the Principal Investigator, Dr. M. J. L. Turner. The consortium comprises the following Institutes: University of Leicester, University of Birmingham, (UK); CEA/Saclay, IAS Orsay, CESR Toulouse, (France); IAAP Tuebingen, MPE Garching, (Germany); IFC Milan, ITESRE Bologna, IAUP Palermo, Italy. EPIC is funded by: PPARC, CEA, CNES, DLR and ASI.

Performance assessment of nitrate leaching models for highly vulnerable soils used in low-input farming based on lysimeter data.

PubMed

Groenendijk, Piet; Heinen, Marius; Klammler, Gernot; Fank, Johann; Kupfersberger, Hans; Pisinaras, Vassilios; Gemitzi, Alexandra; Peña-Haro, Salvador; García-Prats, Alberto; Pulido-Velazquez, Manuel; Perego, Alessia; Acutis, Marco; Trevisan, Marco

2014-11-15

The agricultural sector faces the challenge of ensuring food security without an excessive burden on the environment. Simulation models provide excellent instruments for researchers to gain more insight into relevant processes and best agricultural practices and provide tools for planners for decision making support. The extent to which models are capable of reliable extrapolation and prediction is important for exploring new farming systems or assessing the impacts of future land and climate changes. A performance assessment was conducted by testing six detailed state-of-the-art models for simulation of nitrate leaching (ARMOSA, COUPMODEL, DAISY, EPIC, SIMWASER/STOTRASIM, SWAP/ANIMO) for lysimeter data of the Wagna experimental field station in Eastern Austria, where the soil is highly vulnerable to nitrate leaching. Three consecutive phases were distinguished to gain insight in the predictive power of the models: 1) a blind test for 2005-2008 in which only soil hydraulic characteristics, meteorological data and information about the agricultural management were accessible; 2) a calibration for the same period in which essential information on field observations was additionally available to the modellers; and 3) a validation for 2009-2011 with the corresponding type of data available as for the blind test. A set of statistical metrics (mean absolute error, root mean squared error, index of agreement, model efficiency, root relative squared error, Pearson's linear correlation coefficient) was applied for testing the results and comparing the models. None of the models performed good for all of the statistical metrics. Models designed for nitrate leaching in high-input farming systems had difficulties in accurately predicting leaching in low-input farming systems that are strongly influenced by the retention of nitrogen in catch crops and nitrogen fixation by legumes. An accurate calibration does not guarantee a good predictive power of the model. Nevertheless all models were able to identify years and crops with high- and low-leaching rates. Copyright © 2014 Elsevier B.V. All rights reserved.

Extending and Applying the EPIC Architecture for Human Cognition and Performance

DTIC Science & Technology

2011-01-01

for Information Operations and Reports, 1215 Jefferson Davis Highway, Suite 1204, Arlington, VA 22202-4302. and to the Office of Management and...already underway in the previous project, and then moving on to some other topics. However, it became clear that providing an adequate account of visual...search was in fact an extremely challenging project all by itself. Very few cognitive modeling projects have attempted to account for such a span of

Global three-dimensional simulation of Earth's dayside reconnection using a two-way coupled magnetohydrodynamics with embedded particle-in-cell model: initial results: 3D MHD-EPIC simulation of magnetosphere

DOE PAGES

Chen, Yuxi; Tóth, Gábor; Cassak, Paul; ...

2017-09-18

Here, we perform a three-dimensional (3D) global simulation of Earth's magnetosphere with kinetic reconnection physics to study the flux transfer events (FTEs) and dayside magnetic reconnection with the recently developed magnetohydrodynamics with embedded particle-in-cell model (MHD-EPIC). During the one-hour long simulation, the FTEs are generated quasi-periodically near the subsolar point and move toward the poles. We also find the magnetic field signature of FTEs at their early formation stage is similar to a ‘crater FTE’, which is characterized by a magnetic field strength dip at the FTE center. After the FTE core field grows to a significant value, it becomesmore » an FTE with typical flux rope structure. When an FTE moves across the cusp, reconnection between the FTE field lines and the cusp field lines can dissipate the FTE. The kinetic features are also captured by our model. A crescent electron phase space distribution is found near the reconnection site. A similar distribution is found for ions at the location where the Larmor electric field appears. The lower hybrid drift instability (LHDI) along the current sheet direction also arises at the interface of magnetosheath and magnetosphere plasma. Finally, the LHDI electric field is about 8 mV/m and its dominant wavelength relative to the electron gyroradius agrees reasonably with MMS observations.« less

Global three-dimensional simulation of Earth's dayside reconnection using a two-way coupled magnetohydrodynamics with embedded particle-in-cell model: initial results: 3D MHD-EPIC simulation of magnetosphere

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chen, Yuxi; Tóth, Gábor; Cassak, Paul

Here, we perform a three-dimensional (3D) global simulation of Earth's magnetosphere with kinetic reconnection physics to study the flux transfer events (FTEs) and dayside magnetic reconnection with the recently developed magnetohydrodynamics with embedded particle-in-cell model (MHD-EPIC). During the one-hour long simulation, the FTEs are generated quasi-periodically near the subsolar point and move toward the poles. We also find the magnetic field signature of FTEs at their early formation stage is similar to a ‘crater FTE’, which is characterized by a magnetic field strength dip at the FTE center. After the FTE core field grows to a significant value, it becomesmore » an FTE with typical flux rope structure. When an FTE moves across the cusp, reconnection between the FTE field lines and the cusp field lines can dissipate the FTE. The kinetic features are also captured by our model. A crescent electron phase space distribution is found near the reconnection site. A similar distribution is found for ions at the location where the Larmor electric field appears. The lower hybrid drift instability (LHDI) along the current sheet direction also arises at the interface of magnetosheath and magnetosphere plasma. Finally, the LHDI electric field is about 8 mV/m and its dominant wavelength relative to the electron gyroradius agrees reasonably with MMS observations.« less

EPICS Input Output Controller (IOC) Record Reference Manual

DOE Office of Scientific and Technical Information (OSTI.GOV)

Anderson, J.B.; Kraimer, M.R.

1994-12-01

This manual describes all supported EPICS record types. The first chapter gives introduction and describes the field summary table. The second chapter describes the fields in database common, i.e. the fields that are present in every record type. The third chapter describes the input and output field that are common to many record types and have the same usage wherever they are used. Following the third chapter is a separate chapter for each record type containing a description of all the fields for that record type except those in database common.

Interaction between genes and macronutrient intake on the risk of developing type 2 diabetes: systematic review and findings from European Prospective Investigation into Cancer (EPIC)-InterAct.

PubMed

Li, Sherly X; Imamura, Fumiaki; Ye, Zheng; Schulze, Matthias B; Zheng, Jusheng; Ardanaz, Eva; Arriola, Larraitz; Boeing, Heiner; Dow, Courtney; Fagherazzi, Guy; Franks, Paul W; Agudo, Antonio; Grioni, Sara; Kaaks, Rudolf; Katzke, Verena A; Key, Timothy J; Khaw, Kay Tee; Mancini, Francesca R; Navarro, Carmen; Nilsson, Peter M; Onland-Moret, N Charlotte; Overvad, Kim; Palli, Domenico; Panico, Salvatore; Quirós, J Ramón; Rolandsson, Olov; Sacerdote, Carlotta; Sánchez, María-José; Slimani, Nadia; Sluijs, Ivonne; Spijkerman, Annemieke Mw; Tjonneland, Anne; Tumino, Rosario; Sharp, Stephen J; Riboli, Elio; Langenberg, Claudia; Scott, Robert A; Forouhi, Nita G; Wareham, Nicholas J

2017-07-01

Background: Gene-diet interactions have been reported to contribute to the development of type 2 diabetes (T2D). However, to our knowledge, few examples have been consistently replicated to date. Objective: We aimed to identify existing evidence for gene-macronutrient interactions and T2D and to examine the reported interactions in a large-scale study. Design: We systematically reviewed studies reporting gene-macronutrient interactions and T2D. We searched the MEDLINE, Human Genome Epidemiology Network, and WHO International Clinical Trials Registry Platform electronic databases to identify studies published up to October 2015. Eligibility criteria included assessment of macronutrient quantity (e.g., total carbohydrate) or indicators of quality (e.g., dietary fiber) by use of self-report or objective biomarkers of intake. Interactions identified in the review were subsequently examined in the EPIC (European Prospective Investigation into Cancer)-InterAct case-cohort study ( n = 21,148, with 9403 T2D cases; 8 European countries). Prentice-weighted Cox regression was used to estimate country-specific HRs, 95% CIs, and P -interaction values, which were then pooled by random-effects meta-analysis. A primary model was fitted by using the same covariates as reported in the published studies, and a second model adjusted for additional covariates and estimated the effects of isocaloric macronutrient substitution. Results: Thirteen observational studies met the eligibility criteria ( n < 1700 cases). Eight unique interactions were reported to be significant between macronutrients [carbohydrate, fat, saturated fat, dietary fiber, and glycemic load derived from self-report of dietary intake and circulating n-3 (ω-3) polyunsaturated fatty acids] and genetic variants in or near transcription factor 7-like 2 ( TCF7L2 ), gastric inhibitory polypeptide receptor ( GIPR ), caveolin 2 ( CAV2 ), and peptidase D ( PEPD ) ( P -interaction < 0.05). We found no evidence of interaction when we tried to replicate previously reported interactions. In addition, no interactions were detected in models with additional covariates. Conclusions: Eight gene-macronutrient interactions were identified for the risk of T2D from the literature. These interactions were not replicated in the EPIC-InterAct study, which mirrored the analyses undertaken in the original reports. Our findings highlight the importance of independent replication of reported interactions.

A Client/Server Architecture for Supporting Science Data Using EPICS Version 4

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dalesio, Leo

2015-04-21

The Phase 1 grant that serves as a precursor to this proposal, prototyped complex storage techniques for high speed structured data that is being produced in accelerator diagnostics and beam line experiments. It demonstrates the technologies that can be used to archive and retrieve complex data structures and provide the performance required by our new accelerators, instrumentations, and detectors. Phase 2 is proposed to develop a high-performance platform for data acquisition and analysis to provide physicists and operators a better understanding of the beam dynamics. This proposal includes developing a platform for reading 109 MHz data at 10 KHz ratesmore » through a multicore front end processor, archiving the data to an archive repository that is then indexed for fast retrieval. The data is then retrieved from this data archive, integrated with the scalar data, to provide data sets to client applications for analysis, use in feedback, and to aid in identifying problem with the instrumentation, plant, beam steering, or model. This development is built on EPICS version 4 , which is being successfully deployed to implement physics applications. Through prior SBIR grants, EPICS version 4 has a solid communication protocol for middle layer services (PVAccess), structured data representation and methods for efficient transportation and access (PVData), an operational hierarchical record environment (JAVA IOC), and prototypes for standard structured data (Normative Types). This work was further developed through project funding to successfully deploy the first service based physics application environment with demonstrated services that provide arbitrary object views, save sets, model, lattice, and unit conversion. Thin client physics applications have been developed in Python that implement quad centering, orbit display, bump control, and slow orbit feedback. This service based architecture has provided a very modular and robust environment that enables commissioning teams to rapidly develop and deploy small scripts that build on powerful services. These services are all built on relational database data stores and scalar data. The work proposed herein, builds on these previous successes to provide data acquisition of high speed data for online analysis clients.« less

Convection and Easterly Wave Structure Observed in the Eastern Pacific Warm-Pool during EPIC-2001

NASA Technical Reports Server (NTRS)

Peterson, Walter A.; Cifelli, R.; Boccippio, D.; Rutledge, S. A.; Fairall, C. W.; Arnold, James E. (Technical Monitor)

2002-01-01

During September-October 2001, the East Pacific Investigation of Climate Processes in the Coupled Ocean-Atmosphere System (EPIC-2001) ITCZ field campaign focused on studies of deep convection in the warm-pool region of the East Pacific. In addition to the TAO mooring array, observational platforms deployed during the field phase included the NOAA ship RN Ronald H. Brown, the NSF ship RN Horizon, and the NOAA P-3 and NCAR C-130 aircraft. This study combines C-band Doppler radar, rawinsonde, and surface heat flux data collected aboard the RN Brown to describe ITCZ convective structure and rainfall statistics in the eastern Pacific as a function of 3-5 day easterly wave phase. Three distinct easterly wave passages occurred during EPIC-2001. Wind and thermodynamic data reveal that the wave trough axes exhibited positively correlated U and V winds and a slight westward phase tilt with height. A relatively strong (weak) northeasterly deep tropospheric shear followed the trough (ridge) axis. Temperature and humidity perturbations exhibited mid-to upper level cooling (warming) and drying (moistening) in the northerly (trough and southerly) phase. At low levels warming (cooling) occurred in the northerly (southerly) phase with little change in the relative humidity, though mixed layer mixing ratios were larger during the northerly phase. When composited, radar, sounding, lightning and surface heat flux observations suggest the following systematic behavior as a function of wave phase: approximately zero to one quarter wavelength ahead of (behind) the wave trough in northerly (southerly) flow, larger (smaller) CAPE, lower (higher) CIN, weaker (stronger) tropospheric shear, higher (lower) conditional mean rain rates, higher (lower) lightning flash densities, and more (less) robust convective vertical structure occurred. Latent and sensible heat fluxes reached a minimum in the northerly phase and then increased through the trough, reaching a peak during the ridge phase (leading the peak in CAPE). From a radar echo coverage perspective, larger areas of light rain and slightly larger (10%) area averaged rain rates occurred in the vicinity of, and just behind, the trough axes in southerly flow. Importantly, the transition in convective structure observed across the trough axis when considered with the relatively small change in area mean rain rates suggests the presence of a transition in the vertical structure of diabatic heating across the easterly waves examined. The inferred transition in heating structure is supported by radar diagnosed divergence profiles that exhibit convective (stratiform) characteristics ahead of (behind) the trough.

Evaluating land cover influences on model uncertainties—A case study of cropland carbon dynamics in the Mid-Continent Intensive Campaign region

USGS Publications Warehouse

Li, Zhengpeng; Liu, Shuguang; Zhang, Xuesong; West, Tristram O.; Ogle, Stephen M.; Zhou, Naijun

2016-01-01

Quantifying spatial and temporal patterns of carbon sources and sinks and their uncertainties across agriculture-dominated areas remains challenging for understanding regional carbon cycles. Characteristics of local land cover inputs could impact the regional carbon estimates but the effect has not been fully evaluated in the past. Within the North American Carbon Program Mid-Continent Intensive (MCI) Campaign, three models were developed to estimate carbon fluxes on croplands: an inventory-based model, the Environmental Policy Integrated Climate (EPIC) model, and the General Ensemble biogeochemical Modeling System (GEMS) model. They all provided estimates of three major carbon fluxes on cropland: net primary production (NPP), net ecosystem production (NEP), and soil organic carbon (SOC) change. Using data mining and spatial statistics, we studied the spatial distribution of the carbon fluxes uncertainties and the relationships between the uncertainties and the land cover characteristics. Results indicated that uncertainties for all three carbon fluxes were not randomly distributed, but instead formed multiple clusters within the MCI region. We investigated the impacts of three land cover characteristics on the fluxes uncertainties: cropland percentage, cropland richness and cropland diversity. The results indicated that cropland percentage significantly influenced the uncertainties of NPP and NEP, but not on the uncertainties of SOC change. Greater uncertainties of NPP and NEP were found in counties with small cropland percentage than the counties with large cropland percentage. Cropland species richness and diversity also showed negative correlations with the model uncertainties. Our study demonstrated that the land cover characteristics contributed to the uncertainties of regional carbon fluxes estimates. The approaches we used in this study can be applied to other ecosystem models to identify the areas with high uncertainties and where models can be improved to reduce overall uncertainties for regional carbon flux estimates.

Extending and Applying the EPIC Architecture for Human Cognition and Performance: Auditory and Spatial Components

DTIC Science & Technology

2013-03-20

Wakefield of the University of Michigan as Co-PI. This extended activity produced a large number of products and accomplishments; however, this report...speech communication will be expanded to provide a robust modeling and prediction capability for tasks involving speech production and speech and non...preparations made to move to the newer Cocoa API instead of the previous Carbon API. In the following sections, an extended treatment will be

X-ray Spectral Analysis of the Cataclysmic Variable LS Peg using XMM-Newton Observatory Data

NASA Astrophysics Data System (ADS)

Talebpour Sheshvan, N.; Nabizadeh, A.; Balman, S.

2017-10-01

LS Peg is a Cataclysmic Variable (CV) suggested as Intermediate Polar (IP) because of similar properties to those observed in IP systems. We used archival XMM-Newton observation of LS Peg in order to study the X-ray characteristics of the system. We show LS Peg light curves in several different energy bands, and discuss about orbital modulations and power spectral analysis. Unlike the previous spectral analysis of the EPIC-MOS data by fitting a hot optically thin plasma emission model with a single temperature, we simultaneously fit EPIC spectrum (pn+MOS) using a composite model of absorption (tbabs) along with two different partial covering absorbers plus a multi-temperature plasma emission component in XSPEC. In addition, we find a Gaussian emission line at 6.4 keV. For LS Peg the maximum temperature of the plasma distribution is found to be ˜ 17.8 keV with a luminosity of ˜ 7.4×10^{32}erg s^{-1} translating to an accretion rate of ˜ 1.7×10 ^{-10} M_{⊙} yr^{-1}. We present spectra for orbital minimum and orbital maximum. In addition, we use SWIFT observations of the source in order to make a comparison. We elaborate on the geometry of accretion and absorption in the X-ray emitting region with articulation on the magnetic nature.

Patterns of change and continuity in ochre use during the late Middle Stone Age of the Horn of Africa: The Porc-Epic Cave record

PubMed Central

d’Errico, Francesco; Queffelec, Alain

2017-01-01

Ochre is found at numerous Middle Stone Age (MSA) sites and plays a key role in early modern human archaeology. Here we analyse the largest known East African MSA ochre assemblage, comprising 40 kg of ochre, found at Porc-Epic Cave, Ethiopia, spanning a period of at least 4,500 years. Visual characterisation of ochre types, microscopic identification of traces of modification, morphological and morphometric analysis of ochre pieces and modified areas, experimental reproduction of grinding processes, surface texture analysis of archaeological and experimentally ground ochre facets, laser granulometry of ochre powder produced experimentally on different grindstones and by Hamar and Ovahimba women from Ethiopia and Namibia respectively, were, for the first time, combined to explore diachronic shifts in ochre processing technology. Our results identify patterns of continuity in ochre acquisition, treatment and use reflecting both persistent use of the same geological resources and similar uses of iron-rich rocks by late MSA Porc-Epic inhabitants. Considering the large amount of ochre processed at the site, this continuity can be interpreted as the expression of a cohesive cultural adaptation, largely shared by all community members and consistently transmitted through time. A gradual shift in preferred processing techniques and motions is interpreted as reflecting cultural drift within this practice. Evidence for the grinding of ochre to produce small quantities of powder throughout the sequence is consistent with a use in symbolic activities for at least part of the ochre assemblage from Porc-Epic Cave. PMID:28542305

Minimally important difference for the Expanded Prostate Cancer Index Composite Short Form.

PubMed

Skolarus, Ted A; Dunn, Rodney L; Sanda, Martin G; Chang, Peter; Greenfield, Thomas K; Litwin, Mark S; Wei, John T

2015-01-01

To establish a score threshold that constitutes a clinically relevant change for each domain of the Expanded Prostate Cancer Index Composite (EPIC) Short Form (EPIC-26). Although its use in clinical practice and clinical trials has increased worldwide, the clinical interpretation of this 26-item disease-specific patient-reported quality of life questionnaire for men with localized prostate cancer would be facilitated by characterization of score thresholds for clinically relevant change (the minimally important differences [MIDs]). We used distribution- and anchor-based approaches to establish the MID range for each EPIC-26 domain (urinary, sexual, bowel, and vitality/hormonal) based on a prospective multi-institutional cohort of 1201 men treated for prostate cancer between 2003 and 2006 and followed up for 3 years after treatment. For the anchor-based approach, we compared within-subject and between-subject score changes for each domain to an external "anchor" measure of overall cancer treatment satisfaction. We found the bowel and vitality/hormonal domains to have the lowest MID range (a 4-6 point change should be considered clinically relevant), whereas the sexual domain had the greatest MID values (10-12). Urinary incontinence appeared to have a greater MID range (6-9) than the urinary irritation/obstruction domain (5-7). Using 2 independent approaches, we established the MIDs for each EPIC-26 domain. A definition of these MID values is essential for the researcher or clinician to understand when changes in symptom burden among prostate cancer survivors are clinically relevant. Copyright © 2015 Elsevier Inc. All rights reserved.

Patterns of change and continuity in ochre use during the late Middle Stone Age of the Horn of Africa: The Porc-Epic Cave record.

PubMed

Rosso, Daniela Eugenia; d'Errico, Francesco; Queffelec, Alain

2017-01-01

Ochre is found at numerous Middle Stone Age (MSA) sites and plays a key role in early modern human archaeology. Here we analyse the largest known East African MSA ochre assemblage, comprising 40 kg of ochre, found at Porc-Epic Cave, Ethiopia, spanning a period of at least 4,500 years. Visual characterisation of ochre types, microscopic identification of traces of modification, morphological and morphometric analysis of ochre pieces and modified areas, experimental reproduction of grinding processes, surface texture analysis of archaeological and experimentally ground ochre facets, laser granulometry of ochre powder produced experimentally on different grindstones and by Hamar and Ovahimba women from Ethiopia and Namibia respectively, were, for the first time, combined to explore diachronic shifts in ochre processing technology. Our results identify patterns of continuity in ochre acquisition, treatment and use reflecting both persistent use of the same geological resources and similar uses of iron-rich rocks by late MSA Porc-Epic inhabitants. Considering the large amount of ochre processed at the site, this continuity can be interpreted as the expression of a cohesive cultural adaptation, largely shared by all community members and consistently transmitted through time. A gradual shift in preferred processing techniques and motions is interpreted as reflecting cultural drift within this practice. Evidence for the grinding of ochre to produce small quantities of powder throughout the sequence is consistent with a use in symbolic activities for at least part of the ochre assemblage from Porc-Epic Cave.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Santos, Bruno; Carvalho, Paulo F.; Rodrigues, A.P.

The ATCA standard specifies a mandatory Shelf Manager (ShM) unit which is a key element for the system operation. It includes the Intelligent Platform Management Controller (IPMC) which monitors the system health, retrieves inventory information and controls the Field Replaceable Units (FRUs). These elements enable the intelligent health monitoring, providing high-availability and safety operation, ensuring the correct system operation. For critical systems like ones of tokamak ITER these features are mandatory to support the long pulse operation. The Nominal Device Support (NDS) was designed and developed for the ITER CODAC Core System (CCS), which will be the responsible for plantmore » Instrumentation and Control (I and C), supervising and monitoring on ITER. It generalizes the Enhanced Physics and Industrial Control System (EPICS) device support interface for Data Acquisition (DAQ) and timing devices. However the support for health management features and ATCA ShM are not yet provided. This paper presents the implementation and test of a NDS for the ATCA ShM, using the ITER Fast Plant System Controller (FPSC) prototype environment. This prototype is fully compatible with the ITER CCS and uses the EPICS Channel Access (CA) protocol as the interface with the Plant Operation Network (PON). The implemented solution running in an EPICS Input / Output Controller (IOC) provides Process Variables (PV) to the PON network with the system information. These PVs can be used for control and monitoring by all CA clients, such as EPICS user interface clients and alarm systems. The results are presented, demonstrating the fully integration and the usability of this solution. (authors)« less

Design of a water electrolysis flight experiment

NASA Technical Reports Server (NTRS)

Lee, M. Gene; Grigger, David J.; Thompson, C. Dean; Cusick, Robert J.

1993-01-01

Supply of oxygen (O2) and hydrogen (H2) by electolyzing water in space will play an important role in meeting the National Aeronautics and Space Administration's (NASA's) needs and goals for future space missios. Both O2 and H2 are envisioned to be used in a variety of processes including crew life support, spacecraft propulsion, extravehicular activity, electrical power generation/storage as well as in scientific experiment and manufacturing processes. The Electrolysis Performance Improvement Concept Study (EPICS) flight experiment described herein is sponsored by NASA Headquarters as a part of the In-Space Technology Experiment Program (IN-STEP). The objective of the EPICS is to further contribute to the improvement of the SEF technology, specifially by demonstrating and validating the SFE electromechanical process in microgravity as well as investigating perrformance improvements projected possible in a microgravity environment. This paper defines the experiment objective and presents the results of the preliminary design of the EPICS. The experiment will include testing three subscale self-contained SFE units: one containing baseline components, and two units having variations in key component materials. Tests will be conducted at varying current and thermal condition.

EPICS Controlled Collimator for Controlling Beam Sizes in HIPPO

DOE Office of Scientific and Technical Information (OSTI.GOV)

Napolitano, Arthur Soriano; Vogel, Sven C.

2017-08-03

Controlling the beam spot size and shape in a diffraction experiment determines the probed sample volume. The HIPPO - High-Pressure-Preferred Orientation– neutron time-offlight diffractometer is located at the Lujan Neutron Scattering Center in Los Alamos National Laboratories. HIPPO characterizes microstructural parameters, such as phase composition, strains, grain size, or texture, of bulk (cm-sized) samples. In the current setup, the beam spot has a 10 mm diameter. Using a collimator, consisting of two pairs of neutron absorbing boron-nitride slabs, horizontal and vertical dimensions of a rectangular beam spot can be defined. Using the HIPPO robotic sample changer for sample motion, themore » collimator would enable scanning of e.g. cylindrical samples along the cylinder axis by probing slices of such samples. The project presented here describes implementation of such a collimator, in particular the motion control software. We utilized the EPICS (Experimental Physics Interface and Control System) software interface to integrate the collimator control into the HIPPO instrument control system. Using EPICS, commands are sent to commercial stepper motors that move the beam windows.« less

IGF-1 levels are significantly correlated with patient-reported measures of sexual function.

PubMed

Pastuszak, A W; Liu, J S; Vij, A; Mohamed, O; Sathyamoorthy, K; Lipshultz, L I; Khera, M

2011-01-01

Growth hormone (GH) supplementation may help to preserve erectile function. We assessed whether serum insulin-like growth factor 1 (IGF-1) levels, a surrogate for GH levels, correlate with sexual function scores in 65 men who completed the Sexual Health Inventory for Men (SHIM) and Expanded Prostate Cancer Index Composite (EPIC) questionnaires, and had serum IGF-1 and testosterone levels determined. Median±s.d. IGF-1 level, SHIM and EPIC scores were 235.0±86.4, 19.5±8.7 and 56.4±28.3 mg ml(-1), respectively. IGF-1 levels and total SHIM score correlate significantly (r=0.31, P=0.02), as do IGF-1 levels and all individual SHIM question scores, and IGF-1 levels and the sexual domain of the EPIC questionnaire (r=0.30, P=0.02). No correlation was observed between IGF-1 levels and Gleason score, IGF-1 and testosterone level or SHIM score and testosterone level. These data support a potential role for the GH axis in erectile function.

Validation of a model to investigate the effects of modifying cardiovascular disease (CVD) risk factors on the burden of CVD: the rotterdam ischemic heart disease and stroke computer simulation (RISC) model.

PubMed

van Kempen, Bob J H; Ferket, Bart S; Hofman, Albert; Steyerberg, Ewout W; Colkesen, Ersen B; Boekholdt, S Matthijs; Wareham, Nicholas J; Khaw, Kay-Tee; Hunink, M G Myriam

2012-12-06

We developed a Monte Carlo Markov model designed to investigate the effects of modifying cardiovascular disease (CVD) risk factors on the burden of CVD. Internal, predictive, and external validity of the model have not yet been established. The Rotterdam Ischemic Heart Disease and Stroke Computer Simulation (RISC) model was developed using data covering 5 years of follow-up from the Rotterdam Study. To prove 1) internal and 2) predictive validity, the incidences of coronary heart disease (CHD), stroke, CVD death, and non-CVD death simulated by the model over a 13-year period were compared with those recorded for 3,478 participants in the Rotterdam Study with at least 13 years of follow-up. 3) External validity was verified using 10 years of follow-up data from the European Prospective Investigation of Cancer (EPIC)-Norfolk study of 25,492 participants, for whom CVD and non-CVD mortality was compared. At year 5, the observed incidences (with simulated incidences in brackets) of CHD, stroke, and CVD and non-CVD mortality for the 3,478 Rotterdam Study participants were 5.30% (4.68%), 3.60% (3.23%), 4.70% (4.80%), and 7.50% (7.96%), respectively. At year 13, these percentages were 10.60% (10.91%), 9.90% (9.13%), 14.20% (15.12%), and 24.30% (23.42%). After recalibrating the model for the EPIC-Norfolk population, the 10-year observed (simulated) incidences of CVD and non-CVD mortality were 3.70% (4.95%) and 6.50% (6.29%). All observed incidences fell well within the 95% credibility intervals of the simulated incidences. We have confirmed the internal, predictive, and external validity of the RISC model. These findings provide a basis for analyzing the effects of modifying cardiovascular disease risk factors on the burden of CVD with the RISC model.

Simplifying the interaction between cognitive models and task environments with the JSON Network Interface.

PubMed

Hope, Ryan M; Schoelles, Michael J; Gray, Wayne D

2014-12-01

Process models of cognition, written in architectures such as ACT-R and EPIC, should be able to interact with the same software with which human subjects interact. By eliminating the need to simulate the experiment, this approach would simplify the modeler's effort, while ensuring that all steps required of the human are also required by the model. In practice, the difficulties of allowing one software system to interact with another present a significant barrier to any modeler who is not also skilled at this type of programming. The barrier increases if the programming language used by the modeling software differs from that used by the experimental software. The JSON Network Interface simplifies this problem for ACT-R modelers, and potentially, modelers using other systems.

Impact of hospital care on incidence of bloodstream infection: the evaluation of processes and indicators in infection control study.

PubMed Central

Kritchevsky, S. B.; Braun, B. I.; Wong, E. S.; Solomon, S. L.; Steele, L.; Richards, C.; Simmons, B. P.

2001-01-01

The Evaluation of Processes and Indicators in Infection Control (EPIC) study assesses the relationship between hospital care and rates of central venous catheter-associated primary bacteremia in 54 intensive-care units (ICUs) in the United States and 14 other countries. Using ICU rather than the patient as the primary unit of statistical analysis permits evaluation of factors that vary at the ICU level. The design of EPIC can serve as a template for studies investigating the relationship between process and event rates across health-care institutions. PMID:11294704

Cox Regression Models with Functional Covariates for Survival Data.

PubMed

Gellar, Jonathan E; Colantuoni, Elizabeth; Needham, Dale M; Crainiceanu, Ciprian M

2015-06-01

We extend the Cox proportional hazards model to cases when the exposure is a densely sampled functional process, measured at baseline. The fundamental idea is to combine penalized signal regression with methods developed for mixed effects proportional hazards models. The model is fit by maximizing the penalized partial likelihood, with smoothing parameters estimated by a likelihood-based criterion such as AIC or EPIC. The model may be extended to allow for multiple functional predictors, time varying coefficients, and missing or unequally-spaced data. Methods were inspired by and applied to a study of the association between time to death after hospital discharge and daily measures of disease severity collected in the intensive care unit, among survivors of acute respiratory distress syndrome.

Oxford International Conference on the Mechanical Properties of Materials at High Rates of Strain (4th) Held in Oxford, United Kingdom on 19-22 March 1989

DTIC Science & Technology

1989-03-22

models are used in the computer program EPIC2 to describe the structural response in the cylinder impact test are compared and the differences are...Inc. 8600 Le Salle Road Suite 614, Oxford Building Towson, Maryland 21204 This paper describes the development and application of a computer program ...performed using a dynamic viscoplastic finite element computer program . The resolution of the procedure has been investigated by obtaining replicate

Drought vulnerability assessment of maize in Sub-Saharan Africa: Insights from physical and social perspectives

NASA Astrophysics Data System (ADS)

Kamali, Bahareh; Abbaspour, Karim C.; Wehrli, Bernhard; Yang, Hong

2018-03-01

Drought as a slow-onset phenomenon inflicts important losses to agriculture where the degree of vulnerability depends not only on physical variables such as precipitation and temperature, but also on societal preparedness. While the scopes of physical and social vulnerability are very different in nature, studies distinguishing these two aspects have been lacking. In this study we address the physical and social aspects of drought vulnerability of maize (CDVIphy and CDVIsoc) in Sub-Saharan Africa (SSA). To quantify vulnerability, we applied a probabilistic framework combining a Drought Exposure Index (DEI) with a physical or social Crop Failure Index, CFIphy or CFIsoc, respectively. DEI was derived from the exceedance probability of precipitation. Maize yields, simulated using the Environmental Policy Integrated Climate (EPIC) model, were used to build CFIphy, whereas the residual of simulated and FAO recorded yields were used to construct CFIsoc. The results showed that southern and partially central Africa are more vulnerable to physical drought as compared to other regions. Central and western Africa, however, are socially highly vulnerable. Comparison of CDVIphy and CDVIsoc revealed that societal factors cause more vulnerability than physical variables in almost all SSA countries except Nigeria and South Africa. We conclude that quantification of both drought vulnerabilities help a better characterization of droughts and identify regions where more investments in drought preparedness are required.

Biofuel production and climate mitigation potential from marginal lands in US North Central region

NASA Astrophysics Data System (ADS)

Gelfand, I.; Sahajpal, R.; Zhang, X.; Izaurralde, R. C.; Robertson, G. P.

2010-12-01

An ever-increasing demand for liquid fuels, amidst concerns of anthropogenic impacts on the environment and fossil fuels availability, has spurred a strong interest in the development of agriculturally-based renewable energy sources. However, increasing demand for food as well as direct and indirect effects on land use, have raised concerns about reliance on grain-based ethanol and shifted research towards the direction of cellulosic feedstocks. In order to understand the future possibility for using agricultural systems for bio-fuel production, we present here a full greenhouse gas (GHG) balance of six potential sources of cellulosic feedstocks production. From 1991 to 2008, we measured GHGs sinks and sources in cropped and nearby unmanaged ecosystems in SW Michigan. The measurements included soil fluxes of GHGs (N2O and CH4), soil organic carbon concentration change, agronomic practices data, and biomass yields. We analyzed two types of intensively managed annual cropping systems under corn-soybean-wheat rotation (conventional tillage and no till), two perennial systems (alfalfa and poplar plantation), and one successional system. The use of agricultural residues for biofuel feedstock from conventionally-tilled crops had the lowest climate stabilization potential (-9 ±13 gCO2e m-2 y-1). In contrast, biomass collected from a successional system fertilized with N at123 kg ha-1y-1 showed the highest climate stabilization potential (-749 ±30 gCO2e m-2 y-1). We used our results to parameterize the EPIC model, which, together with GIS analysis was used to scale up the biomass productivity of the best environmentally performing systems to the marginal lands of the 10-state U.S. North Central region. Assuming 80 km as the maximum distance for road haulage to the biorefinery from the field, we identified 32 potential biorefinery placements each capable of supplying sufficient feedstock to produce at least 133 × 106 L y-1. In total, ethanol production from marginal lands could produce ~29 × 109 L ethanol y-1, or about 48% of the 2007 U.S. Congress legislative mandate.

Meat, eggs, dairy products, and risk of breast cancer in the European Prospective Investigation into Cancer and Nutrition (EPIC) cohort.

PubMed

Pala, Valeria; Krogh, Vittorio; Berrino, Franco; Sieri, Sabina; Grioni, Sara; Tjønneland, Anne; Olsen, Anja; Jakobsen, Marianne Uhre; Overvad, Kim; Clavel-Chapelon, Françoise; Boutron-Ruault, Marie-Christine; Romieu, Isabelle; Linseisen, Jakob; Rohrmann, Sabine; Boeing, Heiner; Steffen, Annika; Trichopoulou, Antonia; Benetou, Vassiliki; Naska, Androniki; Vineis, Paolo; Tumino, Rosario; Panico, Salvatore; Masala, Giovanna; Agnoli, Claudia; Engeset, Dagrun; Skeie, Guri; Lund, Eiliv; Ardanaz, Eva; Navarro, Carmen; Sánchez, Maria-José; Amiano, Pilar; Svatetz, Carlos Alberto Gonzalez; Rodriguez, Laudina; Wirfält, Elisabet; Manjer, Jonas; Lenner, Per; Hallmans, Göran; Peeters, Petra H M; van Gils, Carla H; Bueno-de-Mesquita, H Bas; van Duijnhoven, Fränzel J B; Key, Timothy J; Spencer, Elizabeth; Bingham, Sheila; Khaw, Kay-Tee; Ferrari, Pietro; Byrnes, Graham; Rinaldi, Sabina; Norat, Teresa; Michaud, Dominique S; Riboli, Elio

2009-09-01

A Western diet is associated with breast cancer risk. We investigated the relation of meat, egg, and dairy product consumption with breast cancer risk by using data from the European Prospective Investigation into Cancer and Nutrition (EPIC). Between 1992 and 2003, information on diet was collected from 319,826 women. Disease hazard ratios were estimated with multivariate Cox proportional hazard models. Breast cancer cases (n = 7119) were observed during 8.8 y (median) of follow-up. No consistent association was found between breast cancer risk and the consumption of any of the food groups under study, when analyzed by both categorical and continuous exposure variable models. High processed meat consumption was associated with a modest increase in breast cancer risk in the categorical model (hazard ratio: 1.10; 95% CI: 1.00, 1.20; highest compared with lowest quintile: P for trend = 0.07). Subgroup analyses suggested an association with butter consumption, limited to premenopausal women (hazard ratio: 1.28; 95% CI: 1.06, 1.53; highest compared with lowest quintile: P for trend = 0.21). Between-country heterogeneity was found for red meat (Q statistic = 18.03; P = 0.05) and was significantly explained (P = 0.023) by the proportion of meat cooked at high temperature. We have not consistently identified intakes of meat, eggs, or dairy products as risk factors for breast cancer. Future studies should investigate the possible role of high-temperature cooking in the relation of red meat intake with breast cancer risk.

Coffee Drinking and Mortality in Ten European Countries – the EPIC Study

PubMed Central

Gunter, Marc J.; Murphy, Neil; Cross, Amanda J.; Dossus, Laure; Dartois, Laureen; Fagherazzi, Guy; Kaaks, Rudolf; Kühn, Tilman; Boeing, Heiner; Aleksandrova, Krasimira; Tjønneland, Anne; Olsen, Anja; Overvad, Kim; Larsen, Sofus Christian; Cornejo, Maria Luisa Redondo; Agudo, Antonio; Pérez, María José Sánchez; Altzibar, Jone M; Navarro, Carmen; Ardanaz, Eva; Khaw, Kay-Tee; Butterworth, Adam; Bradbury, Kathryn E; Trichopoulou, Antonia; Lagiou, Pagona; Trichopoulos, Dimitrios; Palli, Domenico; Grioni, Sara; Vineis, Paolo; Panico, Salvatore; Tumino, Rosario; Bueno-de-Mesquita, Bas; Siersema, Peter; Leenders, Max; Beulens, Joline WJ; Uiterwaal, Cuno U; Wallström, Peter; Nilsson, Lena Maria; Landberg, Rikard; Weiderpass, Elisabete; Skeie, Guri; Braaten, Tonje; Brennan, Paul; Licaj, Idlir; Muller, David C; Sinha, Rashmi; Wareham, Nick; Riboli, Elio

2018-01-01

Background How coffee consumption relates to mortality in diverse European populations, with variable coffee preparation methods and customs, is unclear. Objectives To examine whether coffee consumption is associated with all-cause and cause-specific mortality in men and women. Design Prospective cohort study. Setting Ten European countries. Participants A total of 521,330 men and women enrolled in the European Prospective Investigation into Cancer and Nutrition (EPIC). Main outcome measure Multivariable hazard ratios (HRs) and 95% confidence intervals(CIs) estimated using multivariable Cox proportional hazards models. The association of coffee with serum biomarkers of liver function, inflammation, and metabolic health was evaluated in the EPIC Biomarkers sub-cohort (n=14,800). Results During a mean follow-up of 16.4 years, 41,693 deaths occurred. Compared with non-consumers, participants in the highest quartile of coffee consumption experienced statistically significant lower all-cause mortality (Men: HR=0.88, 95%CI: 0.82–0.95; P-trend<0.001; Women: HR=0.93, 95%CI: 0.87–0.98; P-trend=0.009). These findings did not vary significantly by country. Inverse associations were observed for digestive disease mortality for men (HR=0.41, 95%CI: 0.32–0.54; P-trend<0.0001) and women (HR=0.60, 95%CI: 0.46–0.78; P-trend<0.0001). Among women only, there was a statistically significant inverse association between coffee and circulatory disease mortality, (HR=0.78, 95%CI: 0.68–0.90; P-trend<0.001), cerebrovascular disease mortality (HR=0.70, 95%CI: 0.55–0.90; P-trend=0.002), and a positive association between coffee and ovarian cancer mortality (HR 1.12, 95% CI: 1.02–1.23 P-trend 0.001). In the EPIC-biomarkers sub-cohort, higher coffee consumption was associated with lower serum alkaline phosphatase, alanine transaminase, aspartate transaminase, and C-reactive protein. Limitation Reverse causality may have led to spurious findings; however, results did not differ following exclusion of participants who died within 8-years of baseline. The study is also limited by a single assessment of coffee drinking habits at baseline. Conclusions These results confirm prior findings on the reduced risk of mortality associated with coffee drinking but additionally show that this relationship does not vary by country where coffee preparation and drinking habits may differ. The study also reports novel inverse relationships between coffee drinking and digestive disease mortality. PMID:28693038

Association among individual deprivation, glycemic control, and diabetes complications: the EPICES score.

PubMed

Bihan, Hélène; Laurent, Silvana; Sass, Catherine; Nguyen, Gérard; Huot, Caroline; Moulin, Jean Jacques; Guegen, René; Le Toumelin, Philippe; Le Clésiau, Hervé; La Rosa, Emilio; Reach, Gérard; Cohen, Régis

2005-11-01

Previous studies have related poor glycemic control and/or some diabetes complications to low socioeconomic status. Some aspects of socioeconomic status have not been assessed in these studies. In the present study, we used an individual index of deprivation, the Evaluation de la Précarité et des Inégalités de santé dans les Centres d'Examens de Santé (Evaluation of Precarity and Inequalities in Health Examination Centers [EPICES]) score, to determine the relationship among glycemic control, diabetes complications, and individual conditions of deprivation. We conducted a cross-sectional prevalence study in 135 consecutive diabetic patients (age 59.41 +/- 13.2 years [mean +/- SD]) admitted in the hospitalization unit of a French endocrine department. Individual deprivation was assessed by the EPICES score, calculated from 11 socioeconomic questions. Glycemic control, lipid levels, blood pressure, retinopathy, neuropathy, and nephropathy were assessed. HbA(1c) level was significantly correlated with the EPICES score (r = 0.366, P < 0.001). The more deprived patients were more likely than the less deprived patients to have poor glycemic control (beta = 1.984 [SE 0.477], P < 0.001), neuropathy (odds ratio 2.39 [95% CI 1.05-5.43], P = 0.037), retinopathy (3.66 [1.39-9.64], P = 0.009), and being less often admitted for 1-day hospitalization (0.32 [0.14-0.74], P = 0.008). No significant relationship was observed with either nephropathy or cardiovascular risk factors. Deprivation status is associated with poor metabolic control and more frequent microvascular complications, i.e., retinopathy and neuropathy. The medical and economic burden of deprived patients is high.

Serum metabolites and risk of myocardial infarction and ischemic stroke: a targeted metabolomic approach in two German prospective cohorts.

PubMed

Floegel, Anna; Kühn, Tilman; Sookthai, Disorn; Johnson, Theron; Prehn, Cornelia; Rolle-Kampczyk, Ulrike; Otto, Wolfgang; Weikert, Cornelia; Illig, Thomas; von Bergen, Martin; Adamski, Jerzy; Boeing, Heiner; Kaaks, Rudolf; Pischon, Tobias

2018-01-01

Metabolomic approaches in prospective cohorts may offer a unique snapshot into early metabolic perturbations that are associated with a higher risk of cardiovascular diseases (CVD) in healthy people. We investigated the association of 105 serum metabolites, including acylcarnitines, amino acids, phospholipids and hexose, with risk of myocardial infarction (MI) and ischemic stroke in the European Prospective Investigation into Cancer and Nutrition (EPIC)-Potsdam (27,548 adults) and Heidelberg (25,540 adults) cohorts. Using case-cohort designs, we measured metabolites among individuals who were free of CVD and diabetes at blood draw but developed MI (n = 204 and n = 228) or stroke (n = 147 and n = 121) during follow-up (mean, 7.8 and 7.3 years) and among randomly drawn subcohorts (n = 2214 and n = 770). We used Cox regression analysis and combined results using meta-analysis. Independent of classical CVD risk factors, ten metabolites were associated with risk of MI in both cohorts, including sphingomyelins, diacyl-phosphatidylcholines and acyl-alkyl-phosphatidylcholines with pooled relative risks in the range of 1.21-1.40 per one standard deviation increase in metabolite concentrations. The metabolites showed positive correlations with total- and LDL-cholesterol (r ranged from 0.13 to 0.57). When additionally adjusting for total-, LDL- and HDL-cholesterol, triglycerides and C-reactive protein, acyl-alkyl-phosphatidylcholine C36:3 and diacyl-phosphatidylcholines C38:3 and C40:4 remained associated with risk of MI. When added to classical CVD risk models these metabolites further improved CVD prediction (c-statistics increased from 0.8365 to 0.8384 in EPIC-Potsdam and from 0.8344 to 0.8378 in EPIC-Heidelberg). None of the metabolites was consistently associated with stroke risk. Alterations in sphingomyelin and phosphatidylcholine metabolism, and particularly metabolites of the arachidonic acid pathway are independently associated with risk of MI in healthy adults.

Acrylamide and glycidamide hemoglobin adducts and epithelial ovarian cancer: a nested case-control study in non-smoking postmenopausal women from the EPIC cohort

PubMed Central

Obón-Santacana, Mireia; Lujan-Barroso, Leila; Travis, Ruth C.; Freisling, Heinz; Ferrari, Pietro; Severi, Gianluca; Baglietto, Laura; Boutron-Ruault, Marie-Christine; Fortner, Renée T.; Ose, Jennifer; Boeing, Heiner; Menéndez, Virginia; Sánchez-Cantalejo, Emilio; Chamosa, Saioa; Huerta Castaño, José María; Ardanaz, Eva; Khaw, Kay-Tee; Wareham, Nick; Merritt, Melissa A.; Gunter, Marc J.; Trichopoulou, Antonia; Papatesta, Eleni-Maria; Klinaki, Eleni; Saieva, Calogero; Tagliabue, Giovanna; Tumino, Rosario; Sacerdote, Carlotta; Mattiello, Amalia; Bueno-de-Mesquita, H.B.; Peeters, Petra H.; Onland-Moret, N. Charlotte; Idahl, Annika; Lundin, Eva; Weiderpass, Elisabete; Vesper, Hubert W.; Riboli, Elio; Duell, Eric J

2015-01-01

Background Acrylamide was classified as ‘probably carcinogenic to humans (group 2A)’ by the International Agency for Research on Cancer. Epithelial ovarian cancer (EOC) is the fourth cause of cancer mortality in women. Five epidemiological studies have evaluated the association between EOC risk and dietary acrylamide intake assessed using food frequency questionnaires, and one nested case-control study evaluated hemoglobin adducts of acrylamide (HbAA) and its metabolite glycidamide (HbGA) and EOC risk; the results of these studies were inconsistent. Methods A nested case-control study in non-smoking postmenopausal women (334 cases, 417 controls) was conducted within the European Prospective Investigation into Cancer and Nutrition (EPIC) cohort. Unconditional logistic regression models were used to estimate odds ratios (OR) and 95% confidence intervals (CI) for the association between HbAA, HbGA, HbAA+HbGA, and HbGA/HbAA and EOC and invasive serous EOC risk. Results No overall associations were observed between biomarkers of acrylamide exposure analyzed in quintiles and EOC risk; however, positive associations were observed between some middle quintiles of HbGA and HbAA+HbGA. Elevated but non-statistically significant ORs for serous EOC were observed for HbGA and HbAA+HbGA (ORQ5vsQ1:1.91, 95%CI:0.96-3.81 and ORQ5vsQ1:1.90, 95%CI:0.94-3.83, respectively); however, no linear dose-response trends were observed. Conclusion This EPIC nested case-control study failed to observe a clear association between biomarkers of acrylamide exposure and the risk of EOC or invasive serous EOC. Impact It is unlikely that dietary acrylamide exposure increases ovarian cancer risk; however, additional studies with larger sample size should be performed to exclude any possible association with EOC risk. PMID:26376083

Dietary glycemic index and glycemic load and breast cancer risk in the European Prospective Investigation into Cancer and Nutrition (EPIC).

PubMed

Romieu, Isabelle; Ferrari, Pietro; Rinaldi, Sabina; Slimani, Nadia; Jenab, Mazda; Olsen, Anja; Tjonneland, Anne; Overvad, Kim; Boutron-Ruault, Marie-Christine; Lajous, Martin; Kaaks, Rudolf; Teucher, Birgit; Boeing, Heiner; Trichopoulou, Antonia; Naska, Androniki; Vasilopoulo, Effie; Sacerdote, Carlotta; Tumino, Rosario; Masala, Giovanna; Sieri, Sabina; Panico, Salvatore; Bueno-de-Mesquita, H Bas; Van-der-A, Daphne; van Gils, Carla H; Peeters, Petra H M; Lund, Eiliv; Skeie, Guri; Asli, Lene Angell; Rodriguez, Laudina; Navarro, Carmen; Amiano, Pilar; Sanchez, Maria-José; Barricarte, Aurelio; Buckland, Genevieve; Sonestedt, Emily; Wirfält, Elisabet; Hallmans, Göran; Johansson, Ingegerd; Key, Timothy J; Allen, Naomi E; Khaw, Kay-Tee; Wareham, Nicholas J; Norat, Teresa; Riboli, Elio; Clavel-Chapelon, Françoise

2012-08-01

The glycemic potential of a diet is associated with chronically elevated insulin concentrations, which may augment breast cancer (BC) risk by stimulating insulin receptor or by affecting insulin-like growth factor I (IGF-I)-mediated mitogenesis. It is unclear whether this effect differs by BC phenotype. The objective was to investigate the relation between glycemic index (GI), glycemic load (GL), and total carbohydrate intake with BC by using data from the European Prospective Investigation into Cancer and Nutrition (EPIC). We identified 11,576 women with invasive BC among 334,849 EPIC women aged 34-66 y (5th to 95th percentiles) at baseline over a median follow-up of 11.5 y. Dietary GI and GL were calculated from country-specific dietary questionnaires. We used multivariable Cox proportional hazards models to quantify the association between GI, GL, and carbohydrate intake and BC risk. BC tumors were classified by receptor status. Overall GI, GL, and carbohydrates were not related to BC. Among postmenopausal women, GL and carbohydate intake were significantly associated with an increased risk of estrogen receptor-negative (ER(-)) BC when extreme quintiles (Q) were compared [multivariable HR(Q5-Q1) (95% CI) = 1.36 (1.02, 1.82; P-trend = 0.010) and HR(Q5-Q1) = 1.41 (1.05, 1.89; P-trend = 0.009), respectively]. Further stratification by progesterone receptor (PR) status showed slightly stronger associations with ER(-)/PR(-) BC [HR(Q5-Q1) (95% CI) = 1.48 (1.07, 2.05; P-trend = 0.010) for GL and HR(Q5-Q1) = 1.62 (1.15, 2.30; P-trend = 0.005) for carbohydrates]. No significant association with ER-positive BC was observed. Our results indicate that a diet with a high GL and carbohydrate intake is positively associated with an increased risk of developing ER(-) and ER(-)/PR(-) BC among postmenopausal women.

Channel Access in Erlang

DOE Office of Scientific and Technical Information (OSTI.GOV)

Nicklaus, Dennis J.

2013-10-13

We have developed an Erlang language implementation of the Channel Access protocol. Included are low-level functions for encoding and decoding Channel Access protocol network packets as well as higher level functions for monitoring or setting EPICS process variables. This provides access to EPICS process variables for the Fermilab Acnet control system via our Erlang-based front-end architecture without having to interface to C/C++ programs and libraries. Erlang is a functional programming language originally developed for real-time telecommunications applications. Its network programming features and list management functions make it particularly well-suited for the task of managing multiple Channel Access circuits and PVmore » monitors.« less

An Analysis of Pulsating Subdwarf B Star EPIC 203948264 Observed During Campaign 2 of K2

NASA Astrophysics Data System (ADS)

Ketzer, Laura; Reed, Mike

2017-10-01

We present a preliminary analysis of the newly-discovered pulsating subdwarf B (sdB) star EPIC 203948264. The target was observed for 83 days in short cadence mode during Campaign 2 of K2, the two-gyro mission of the Kepler space telescope. A time-series analysis of the data revealed 22 independent pulsation frequencies in the g-mode region ranging from 100 to 600 μHz (0:5 to 2:8 hours). The main method we use to identify pulsation modes is asymptotic period spacing, and we were able to assign all but one of the pulsations to either l = 1 or l = 2. The average period spacings of both sequences are 261:34 ± 0.78 s and 151:18 ± 0.34 s, respectively. The pulsation amplitudes range from 0.77 ppt down to the detection limit at 0.212 ppt, and are not stable over the duration of the campaign. We detected one possible low-amplitude, l = 2, rotationally split multiplet, which allowed us to constrain the rotation period to 46 days or longer. This makes EPIC 203948264 another slowly rotating sdB star.

One Year on Earth – Seen From 1 Million Miles

NASA Image and Video Library

2017-12-08

On July 20, 2015, NASA released to the world the first image of the sunlit side of Earth captured by the space agency's EPIC camera on NOAA's DSCOVR satellite. The camera has now recorded a full year of life on Earth from its orbit at Lagrange point 1, approximately 1 million miles from Earth, where it is balanced between the gravity of our home planet and the sun. EPIC takes a new picture every two hours, revealing how the planet would look to human eyes, capturing the ever-changing motion of clouds and weather systems and the fixed features of Earth such as deserts, forests and the distinct blues of different seas. EPIC will allow scientists to monitor ozone and aerosol levels in Earth’s atmosphere, cloud height, vegetation properties and the ultraviolet reflectivity of Earth. The primary objective of DSCOVR, a partnership between NASA, the National Oceanic and Atmospheric Administration (NOAA) and the U.S. Air Force, is to maintain the nation’s real-time solar wind monitoring capabilities, which are critical to the accuracy and lead time of space weather alerts and forecasts from NOAA. For more information about DSCOVR, visit: go.nasa.gov/29Pqm15

Light-Driven Water Splitting by a Covalently Linked Ruthenium-Based Chromophore–Catalyst Assembly

DOE PAGES

Sherman, Benjamin D.; Xie, Yan; Sheridan, Matthew V.; ...

2016-12-09

The preparation and characterization of new Ru(II) polypyridyl-based chromophore–catalyst assemblies, [(4,4'-PO 3H 2-bpy) 2Ru(4-Mebpy-4'-epic)Ru(bda)(pic)] 2+ (1, bpy = 2,2'-bipyridine; 4-Mebpy-4'-epic = 4-(4-methylbipyridin-4'-yl-ethyl)-pyridine; bda = 2,2'-bipyridine-6,6'-dicarboxylate; pic = 4-picoline), and [(bpy) 2Ru(4-Mebpy-4'-epic)Ru(bda)(pic)] 2+ (1') are described, as is the application of 1 in a dye-sensitized photoelectrosynthesis cell (DSPEC) for solar water splitting. Furthermore, on SnO 2/TiO 2 core–shell electrodes in a DSPEC configuration with a Pt cathode, the chromophore–catalyst assembly undergoes light-driven water oxidation at pH 5.7 in a 0.1 M acetate buffer, 0.5 M in NaClO 4. We observed photocurrents of ~0.85 mA cm –2, with illumination by a 100more » mW cm –2 white light source, after 30 s under a 0.1 V vs Ag/AgCl applied bias with a faradaic efficiency for O 2 production of 74% measured over a 5 min illumination period.« less

Electrolysis Performance Improvement Concept Study (EPICS) Flight Experiment-Reflight

NASA Technical Reports Server (NTRS)

Schubert, F. H.

1997-01-01

The Electrolysis Performance Improvement Concept Study (EPICS) is a flight experiment to demonstrate and validate in a microgravity environment the Static Feed Electrolyzer (SFE) concept which was selected for the use aboard the International Space Station (ISS) for oxygen (O2) generation. It also is to investigate the impact of microgravity on electrochemical cell performance. Electrochemical cells are important to the space program because they provide an efficient means of generating O2 and hydrogen (H2) in space. Oxygen and H2 are essential not only for the survival of humans in space but also for the efficient and economical operation of various space systems. Electrochemical cells can reduce the mass, volume and logistical penalties associated with resupply and storage by generating and/or consuming these gases in space. An initial flight of the EPICS was conducted aboard STS-69 from September 7 to 8, 1995. A temperature sensor characteristics shift and a missing line of software code resulted in only partial success of this initial flight. Based on the review and recommendations of a National Aeronautics and Space Administration (NASA) Johnson Space Center (JSC) review team a reflight activity was initiated to obtain the remaining desired results, not achieved during the initial flight.

Light-Driven Water Splitting by a Covalently Linked Ruthenium-Based Chromophore–Catalyst Assembly

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sherman, Benjamin D.; Xie, Yan; Sheridan, Matthew V.

The preparation and characterization of new Ru(II) polypyridyl-based chromophore–catalyst assemblies, [(4,4'-PO 3H 2-bpy) 2Ru(4-Mebpy-4'-epic)Ru(bda)(pic)] 2+ (1, bpy = 2,2'-bipyridine; 4-Mebpy-4'-epic = 4-(4-methylbipyridin-4'-yl-ethyl)-pyridine; bda = 2,2'-bipyridine-6,6'-dicarboxylate; pic = 4-picoline), and [(bpy) 2Ru(4-Mebpy-4'-epic)Ru(bda)(pic)] 2+ (1') are described, as is the application of 1 in a dye-sensitized photoelectrosynthesis cell (DSPEC) for solar water splitting. Furthermore, on SnO 2/TiO 2 core–shell electrodes in a DSPEC configuration with a Pt cathode, the chromophore–catalyst assembly undergoes light-driven water oxidation at pH 5.7 in a 0.1 M acetate buffer, 0.5 M in NaClO 4. We observed photocurrents of ~0.85 mA cm –2, with illumination by a 100more » mW cm –2 white light source, after 30 s under a 0.1 V vs Ag/AgCl applied bias with a faradaic efficiency for O 2 production of 74% measured over a 5 min illumination period.« less

Cross-cultural adaptation and validation of the French version of the Expanded Prostate cancer Index Composite questionnaire for health-related quality of life in prostate cancer patients.

PubMed

Anota, Amélie; Mariet, Anne-Sophie; Maingon, Philippe; Joly, Florence; Bosset, Jean-François; Guizard, Anne-Valérie; Bittard, Hugues; Velten, Michel; Mercier, Mariette

2016-12-06

Health-related quality of life (HRQoL) has been positioned as one of the major endpoints in oncology. Thus, there is a need to validate cancer-site specific survey instruments. This study aimed to perform a transcultural adaptation of the 50-item Expanded Prostate cancer Index Composite (EPIC) questionnaire for HRQoL in prostate cancer patients and to validate the psychometric properties of the French-language version. The EPIC questionnaire measures urinary, bowel, sexual and hormonal domains. The first step, corresponding to transcultural adaptation of the original English version of the EPIC was performed according to the back translation technique. The second step, comprising the validation of the psychometric properties of the EPIC questionnaire, was performed in patients under treatment for localized prostate cancer (treatment group) and in patients cured of prostate cancer (cured group). The EORTC QLQ-C30 and QLQ-PR25 prostate cancer module were also completed by patients to assess criterion validity. Two assessments were performed, i.e., before and at the end of treatment for the Treatment group, to assess sensitivity to change; and at 2 weeks' interval in the Cured group to assess test-retest reliability. Psychometric properties were explored according to classical test theory. The first step showed overall good acceptability and understanding of the questionnaire. In the second step, 215 patients were included from January 2012 to June 2014: 125 in the Treatment group, and 90 in the Cured group. All domains exhibited good internal consistency, except the bowel domain (Cronbach's α = 0.61). No floor effect was observed. Test-retest reliability assessed in the cured group was acceptable, expect for bowel function (intraclass coefficient = 0.68). Criterion validity was good for each domain and subscale. Construct validity was not demonstrated for the hormonal and bowel domains. Sensitivity to change was exhibited for 5/8 subscales and 2/4 summary scores for patients who experienced toxicities during treatment. The French EPIC questionnaire seems to have adequate psychometric properties, comparable to those exhibited by the original English-language version, except for the construct validity, which was not available in original version.

Patient reported outcomes in NRG Oncology RTOG 0938, evaluating two ultrahypofractionated regimens for prostate cancer.

PubMed

Lukka, Himanshu R; Pugh, Stephanie L; Bruner, Deborah W; Bahary, Jean-Paul; Lawton, Colleen A F; Efstathiou, Jason A; Kudchadker, Rajat J; Ponsky, Lee E; Seaward, Samantha A; Dayes, Ian S; Gopaul, Darindra D; Michalski, Jeff M; Delouya, Guila; Kaplan, Irving D; Horwitz, Eric M; Roach, Mack; Pinover, Wayne H; Beyer, David C; Amanie, John O; Sandler, Howard M; Kachnic, Lisa A

2018-06-15

There is considerable interest in very short (ultrahypofractionated) radiotherapy regimens to treat prostate cancer based on potential radiobiological advantages, patient convenience and resource allocation benefits. To demonstrate that detectable changes in health related quality of life measured by the bowel and urinary domains of the Expanded Prostate Cancer Index Composite (EPIC-50) were not substantially worse than baseline. XXXX is a non-blinded randomized phase II study of NCCN low risk prostate cancer where each arm is compared to a historical control. Patients were randomized to five fractions (7.25Gy in two weeks), or twelve fractions (4.3Gy in 2.5 weeks). The co-primary endpoints were the proportion of patients with a change in EPIC bowel score at one year (baseline to one-year) >five points and in EPIC urinary score >two points tested with a one-sample binomial test. and Limitations: 127 patients were enrolled to five fractions (121 analyzed) and 128 to twelve fractions (125 analyzed). Median follow-up for all patients at the time of analysis was 3.8 years. The one year frequency for >five point change in bowel score for five and twelve fractions were 29.8%(p<0.001) and 28.4%(p<0.001) respectively. The one year frequency for >two point change in urinary score for five and twelve fractions were 45.7%(p<0.001) and 42.2%(p<0.001) respectively. For five and twelve fractions 32.9% of patients had a drop in 1 year EPIC sexual score ≥ 11 points (p=0.34) while 30.9% of patients had a drop in 1 year EPIC sexual score ≥11 points (p=0.20) in the twelve fraction arm respectively. DFS at two years is 93.3% (95% CI: 88.8, 97.8) and 88.3% (95% CI: 82.5, 94.0) in the five and twelve fraction arms, respectively. There was no late grade 4 or 5 treatment-related urinary or bowel toxicity. This study confirms that based on changes in bowel and urinary domains and toxicity (acute and late) the five and twelve fractions regimens are well tolerated. These ultrahypofractionated approaches need to be compared to current standard radiotherapy regimens. Copyright © 2018. Published by Elsevier Inc.

Anthropometry and the Risk of Lung Cancer in EPIC.

PubMed

Dewi, Nikmah Utami; Boshuizen, Hendriek C; Johansson, Mattias; Vineis, Paolo; Kampman, Ellen; Steffen, Annika; Tjønneland, Anne; Halkjær, Jytte; Overvad, Kim; Severi, Gianluca; Fagherazzi, Guy; Boutron-Ruault, Marie-Christine; Kaaks, Rudolf; Li, Kuanrong; Boeing, Heiner; Trichopoulou, Antonia; Bamia, Christina; Klinaki, Eleni; Tumino, Rosario; Palli, Domenico; Mattiello, Amalia; Tagliabue, Giovanna; Peeters, Petra H; Vermeulen, Roel; Weiderpass, Elisabete; Torhild Gram, Inger; Huerta, José María; Agudo, Antonio; Sánchez, María-José; Ardanaz, Eva; Dorronsoro, Miren; Quirós, José Ramón; Sonestedt, Emily; Johansson, Mikael; Grankvist, Kjell; Key, Tim; Khaw, Kay-Tee; Wareham, Nick; Cross, Amanda J; Norat, Teresa; Riboli, Elio; Fanidi, Anouar; Muller, David; Bueno-de-Mesquita, H Bas

2016-07-15

The associations of body mass index (BMI) and other anthropometric measurements with lung cancer were examined in 348,108 participants in the European Investigation Into Cancer and Nutrition (EPIC) between 1992 and 2010. The study population included 2,400 case patients with incident lung cancer, and the average length of follow-up was 11 years. Hazard ratios were calculated using Cox proportional hazard models in which we modeled smoking variables with cubic splines. Overall, there was a significant inverse association between BMI (weight (kg)/height (m)(2)) and the risk of lung cancer after adjustment for smoking and other confounders (for BMI of 30.0-34.9 versus 18.5-25.0, hazard ratio = 0.72, 95% confidence interval: 0.62, 0.84). The strength of the association declined with increasing follow-up time. Conversely, after adjustment for BMI, waist circumference and waist-to-height ratio were significantly positively associated with lung cancer risk (for the highest category of waist circumference vs. the lowest, hazard ratio = 1.25, 95% confidence interval: 1.05, 1.50). Given the decline of the inverse association between BMI and lung cancer over time, the association is likely at least partly due to weight loss resulting from preclinical lung cancer that was present at baseline. Residual confounding by smoking could also have influenced our findings. © The Author 2016. Published by Oxford University Press on behalf of the Johns Hopkins Bloomberg School of Public Health. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Global Water Resources Under Future Changes: Toward an Improved Estimation

NASA Astrophysics Data System (ADS)

Islam, M.; Agata, Y.; Hanasaki, N.; Kanae, S.; Oki, T.

2005-05-01

Global water resources availability in the 21st century is going to be an important concern. Despite its international recognition, however, until now there are very limited global estimates of water resources, which considered the geographical linkage between water supply and demand, defined by runoff and its passage through river network. The available studies are again insufficient due to reasons like different approaches in defining water scarcity, simply based on annual average figures without considering the inter-annual or seasonal variability, absence of the inclusion of virtual water trading, etc. In this study, global water resources under future climate change associated with several socio-economic factors were estimated varying over both temporal and spatial scale. Global runoff data was derived from several land surface models under the GSWP2 (Global Soil Wetness Project) project, which was further processed through TRIP (Total Runoff Integrated Pathways) river routing model to produce a 0.5x0.5 degree grid based figure. Water abstraction was estimated for the same spatial resolution for three sectors as domestic, industrial and agriculture. GCM outputs from CCSR and MRI were collected to predict the runoff changes. Socio-economic factors like population and GDP growth, affected mostly the demand part. Instead of simply looking at annual figures, monthly figures for both supply and demand was considered. For an average year, such a seasonal variability can affect the crop yield significantly. In other case, inter-annual variability of runoff can cause for an absolute drought condition. To account for vulnerabilities of a region to future changes, both inter-annual and seasonal effects were thus considered. At present, the study assumed the future agricultural water uses to be unchanged under climatic changes. In this connection, EPIC model is underway to use for estimating future agricultural water demand under climatic changes on a monthly basis. From the estimation of present stress level (withdrawal to resource ratio), the months between January to May was found to have the highest number of population above water stress level, while the months between June to August having lower population in stress. The regions suffering from high seasonal variability are those of Asian monsoon zone, south-central Africa and central-east part of South America. Inter-annual variability, on the other hand, is dominant mostly along the Middle-east or Sahara regions and the western part of South America and Latin America. Virtual water trading among countries was estimated on per capita basis. It shows that many Middle east countries are able to compensate their water stress significantly through virtual water trading. The overall effect of climate change on lowering of river runoff mostly affected Europe, southern part of China and Latin America. India or Central Africa have better runoff availability under changing climate, but still subject to a higher water stress because of socio-economic factors like high population growth and expected increase in rate of water uses. Decrease in population as well as saturation level of maximum water uses along most European countries, on the contrary, relaxed the pressure of lowering river runoff, causing no significant change in future stress.

Using lifestyle factors to identify individuals at higher risk of inflammatory polyarthritis (results from the European Prospective Investigation of Cancer-Norfolk and the Norfolk Arthritis Register—the EPIC-2-NOAR Study)

PubMed Central

Lahiri, Manjari; Luben, Robert N; Morgan, Catharine; Bunn, Diane K; Marshall, Tarnya; Lunt, Mark; Verstappen, Suzanne M M; Symmons, Deborah P M; Khaw, Kay-Tee; Wareham, Nick; Bruce, Ian N

2014-01-01

Objectives To investigate the association of lifestyle factors with risk of inflammatory polyarthritis (IP) and rheumatoid arthritis (RA). Methods The European Prospective Investigation of Cancer, Norfolk, UK (EPIC-Norfolk) gathered lifestyle data from participants aged 40–79 years from 1993 to 1997. Individuals who subsequently developed IP were identified by linkage with the Norfolk Arthritis Register. A Cox proportional hazard model was developed, and a score assigned to each risk factor to calculate the odds of developing IP. Results 25 455 EPIC participants were followed for a median (IQR) of 14.2 (12.9, 15.3) years; 184 developed incident IP (138 cumulatively fulfilled criteria for RA; 107 were seropositive). Pack-years of smoking were associated with increased risk of IP and RA in men (HR 1.21 (95% CI 1.08 to 1.37) per 10-pack-years) and seropositive IP (HR 1.24 (95% CI 1.10 to 1.41)) for all. Diabetes mellitus was associated with increased risk of IP (HR 2.54 (95% CI 1.26 to 5.09)), while alcohol (HR 0.86 (95% CI 0.74 to 0.99) per unit/day) and higher social class (HR 0.36 (95% CI 0.15 to 0.89) for professionals vs manual workers) were associated with reduced risk. Body mass index was associated with seronegative IP (HR 2.75 (95% CI 1.39 to 5.46) for obese vs normal-weight participants). In women, parity (HR 2.81 (95% CI 1.37 to 5.76) for ≥2 vs no children) was associated with increased risk, and breast feeding (HR 0.66 (95% CI 0.46 to 0.94) for every 52 weeks of breast feeding) was inversely associated with risk. Risk factors from the model were used to generate a ‘risk score’. A total of 1159 (8.4%) women had scores reflecting a >3-fold increased risk of IP over those with a score of 0. Conclusions Several easily ascertained clinical and lifestyle factors can be used to stratify populations for risk of IP. PMID:23505230

Modeling phosphorus losses from soils amended with cattle manures and chemical fertilizers.

PubMed

Wang, Zhaozhi; Zhang, T Q; Tan, C S; Vadas, P; Qi, Z M; Wellen, C

2018-05-22

While applied manure/fertilizer is an important source of P loss in surface runoff, few models simulate the direct transfer of phosphorus (P) from soil-surface-applied manure/fertilizer to surface runoff. The SurPhos model was tested with 2008-2010 growing season daily surface runoff data from clay loam experimental plots subject to different manure/fertilizer applications. Model performance was evaluated on the basis of the coefficient of determination (R 2 ), Nash-Sutcliffe efficiency (NSE), percent bias (PBIAS), and the ratio of the root mean square error to the standard deviation of observed values (RSR). The model offered an acceptable performance in simulating soil labile P dynamics (R 2  = 0.75, NSE = 0.55, PBIAS = 10.43%, and RSR = 0.67) and dissolved reactive P (DRP) loss in surface runoff (R 2  ≥ 0.74 and NSE ≥ 0.69) for both solid and liquid cattle manure, as well as inorganic fertilizer. Simulated direct P loss in surface runoff from solid and liquid cattle manure accounted for 39% and 40% of total growing season DRP losses in surface runoff. To compensate for the unavailability of daily surface runoff observations under snow melt condition, the whole four years' (2008-2011) daily surface runoff predicted by EPIC (Environmental Policy Integrated Climate) was used as SurPhos input. The accuracy of simulated DRP loss in surface runoff under the different manure/fertilizer treatments was acceptable (R 2  ≥ 0.55 and NSE ≥ 0.50). For the solid cattle manure treatment, of all annual DRP losses, 19% were derived directly from the manure. Beyond offering a reliable prediction of manure/fertilizer P loss in surface runoff, SurPhos quantified different sources of DRP loss and dynamic labile P in soil, allowing a better critical assessment of different P management measures' effectiveness in mitigating DRP losses. Copyright © 2018 Elsevier B.V. All rights reserved.

The EPIC-MOS Particle-Induced Background Spectrum

NASA Technical Reports Server (NTRS)

Kuntz, K. D.; Snowden, S. L.

2006-01-01

We have developed a method for constructing a spectrum of the particle-induced instrumental background of the XMM-Newton EPIC MOS detectors that can be used for observations of the diffuse background and extended sources that fill a significant fraction of the instrument field of view. The strength and spectrum of the particle-induced background, that is, the background due to the interaction of particles with the detector and the detector surroundings, is temporally variable as well as spatially variable over individual chips. Our method uses a combination of the filter-wheel-closed data and a database of unexposed-region data to construct a spectrum of the "quiescent" background. We show that, using this method of background subtraction, the differences between independent observations of the same region of "blank sky" are consistent with the statistical uncertainties except when there is clear evidence of solar wind charge exchange emission. We use the blank sky observations to show that contamination by SWCX emission is a strong function of the solar wind proton flux, and that observations through the flanks of the magnetosheath appear to be contaminated only at much higher solar wind fluxes. We have also developed a spectral model of the residual soft proton flares, which allows their effects to be removed to a substantial degree during spectral fitting.

The relation between dietary protein, calcium and bone health in women: results from the EPIC-Potsdam cohort.

PubMed

Weikert, Cornelia; Walter, Dietmar; Hoffmann, Kurt; Kroke, Anja; Bergmann, Manuela M; Boeing, Heiner

2005-01-01

The role of dietary protein in bone health is controversial. The objective of the present study was to examine the association between protein intake, dietary calcium, and bone structure measured by broadband ultrasound attenuation (BUA). Our analysis includes 8,178 female study participants of the European Prospective Investigation into Cancer and Nutrition (EPIC) Potsdam Study. Ultrasound bone measurements were performed on the right os calcis, and BUA was determined. Dietary intake was assessed by a standardized food frequency questionnaire. We applied linear regression models to estimate the association between dietary protein and BUA. After multivariate adjustment, high intake of animal protein was associated with decreased BUA values (beta = -0.03; p = 0.010) whereas high vegetable protein intake was related to an increased BUA (beta = 0.11; p = 0.007). The effect of dietary animal protein on BUA was modified by calcium intake. High consumption of protein from animal origin may be unfavourable, whereas a higher vegetable protein intake may be beneficial for bone health. Our results strengthen the hypothesis that high calcium intake combined with adequate protein intake based on a high ratio of vegetable to animal protein may be protective against osteoporosis. Copyright (c) 2005 S. Karger AG, Basel.

Investigating the galactic Supernova Remnant Kes 78 with XMM-Newton

NASA Astrophysics Data System (ADS)

Miceli, M.; Bamba, A.; Orlando, S.; Bocchino, F.

2016-06-01

The galactic supernova remnant Kes 78 is associated with a HESS gamma-ray source and its X-ray emission has been recently revealed by Suzaku observations which have found indications for a hard X-ray component in the spectra. We analyzed an XMM-Newton EPIC observation of Kes 78 and studied the spatial distribution of the physical and chemical properties of the X-ray emitting plasma. The EPIC data unveiled a very complex morphology for the soft X-ray emission. We performed image analysis and spatially resolved spectral analysis finding indications for the interaction of the remnant with a local molecular cloud. Finally, we investigated the origin of the hard X-ray emitting component.

Investigating the Galactic supernova remnant Kes 78 with XMM-Newton

NASA Astrophysics Data System (ADS)

Miceli, Marco; Bamba, Aya; Orlando, Salvatore; Bocchino, Fabrizio

2016-06-01

The galactic supernova remnant Kes 78 is associated with a HESS gamma-ray source and its X-ray emission has been recently revealed by Suzaku observations which have found indications for a hard X-ray component in the spectra. We analyzed an XMM-Newton EPIC observation of Kes 78 and studied the spatial distribution of the physical and chemical properties of the X-ray emitting plasma. The EPIC data unveiled a very complex morphology for the soft X-ray emission. We performed image analysis and spatially resolved spectral analysis finding indications for the interaction of the remnant with a local molecular cloud. Finally, we investigated the origin of the hard X-ray emitting component.

ISHN Ion Source Control System. First Steps Toward an EPICS Based ESS-Bilbao Accelerator Control System

NASA Astrophysics Data System (ADS)

Eguiraun, M.; Jugo, J.; Arredondo, I.; del Campo, M.; Feuchtwanger, J.; Etxebarria, V.; Bermejo, F. J.

2013-04-01

ISHN (Ion Source Hydrogen Negative) consists of a Penning type ion source in operation at ESS-Bilbao facilities. From the control point of view, this source is representative of the first steps and decisions taken towards the general control architecture of the whole accelerator to be built. The ISHN main control system is based on a PXI architecture, under a real-time controller which is programmed using LabVIEW. This system, with additional elements, is connected to the general control system. The whole system is based on EPICS for the control network, and the modularization of the communication layers of the accelerator plays an important role in the proposed control architecture.

Developing a Cookbook with Lifestyle Tips: A Community-Engaged Approach to Promoting Diet-Related Cancer Prevention Guidelines.

PubMed

Smith, Selina A; Sheats, Joyce Q; Whitehead, Mary S; Delmoor, Ernestine; Britt, Thomas; Harris, Cassandra L; Robinson-Flint, Janette; Porche-Smith, L Monique; Umeakunne, Kayellen Edmonds; Coughlin, Steven S

Supplementing nutrition education with skills-building activities may enhance community awareness of diet-related cancer prevention guidelines. To develop a cookbook with lifestyle tips, recipes were solicited from the National Black Leadership Initiative on Cancer (NBLIC) community coalitions and dietary intake advice from participants in the Educational Program to Increase Colorectal Cancer Screening (EPICS). With guidance from a chef and registered dietitian, recipes were tested, assessed, and transformed; lifestyle advice was obtained from focus groups. The cookbook with lifestyle tips, named "Down Home Healthy Living (DHHL) 2.0," was distributed in print form to 2,500 EPICS participants and shared electronically through websites and social media.

Developing a Cookbook with Lifestyle Tips: A Community-Engaged Approach to Promoting Diet-Related Cancer Prevention Guidelines

PubMed Central

Smith, Selina A.; Sheats, Joyce Q.; Whitehead, Mary S.; Delmoor, Ernestine; Britt, Thomas; Harris, Cassandra L.; Robinson-Flint, Janette; Porche-Smith, L. Monique; Umeakunne, Kayellen Edmonds; Coughlin, Steven S.

2015-01-01

Supplementing nutrition education with skills-building activities may enhance community awareness of diet-related cancer prevention guidelines. To develop a cookbook with lifestyle tips, recipes were solicited from the National Black Leadership Initiative on Cancer (NBLIC) community coalitions and dietary intake advice from participants in the Educational Program to Increase Colorectal Cancer Screening (EPICS). With guidance from a chef and registered dietitian, recipes were tested, assessed, and transformed; lifestyle advice was obtained from focus groups. The cookbook with lifestyle tips, named “Down Home Healthy Living (DHHL) 2.0,” was distributed in print form to 2,500 EPICS participants and shared electronically through websites and social media. PMID:26709388

Towards systematic evaluation of crop model outputs for global land-use models

NASA Astrophysics Data System (ADS)

Leclere, David; Azevedo, Ligia B.; Skalský, Rastislav; Balkovič, Juraj; Havlík, Petr

2016-04-01

Land provides vital socioeconomic resources to the society, however at the cost of large environmental degradations. Global integrated models combining high resolution global gridded crop models (GGCMs) and global economic models (GEMs) are increasingly being used to inform sustainable solution for agricultural land-use. However, little effort has yet been done to evaluate and compare the accuracy of GGCM outputs. In addition, GGCM datasets require a large amount of parameters whose values and their variability across space are weakly constrained: increasing the accuracy of such dataset has a very high computing cost. Innovative evaluation methods are required both to ground credibility to the global integrated models, and to allow efficient parameter specification of GGCMs. We propose an evaluation strategy for GGCM datasets in the perspective of use in GEMs, illustrated with preliminary results from a novel dataset (the Hypercube) generated by the EPIC GGCM and used in the GLOBIOM land use GEM to inform on present-day crop yield, water and nutrient input needs for 16 crops x 15 management intensities, at a spatial resolution of 5 arc-minutes. We adopt the following principle: evaluation should provide a transparent diagnosis of model adequacy for its intended use. We briefly describe how the Hypercube data is generated and how it articulates with GLOBIOM in order to transparently identify the performances to be evaluated, as well as the main assumptions and data processing involved. Expected performances include adequately representing the sub-national heterogeneity in crop yield and input needs: i) in space, ii) across crop species, and iii) across management intensities. We will present and discuss measures of these expected performances and weight the relative contribution of crop model, input data and data processing steps in performances. We will also compare obtained yield gaps and main yield-limiting factors against the M3 dataset. Next steps include iterative improvement of parameter assumptions and evaluation of implications of GGCM performances for intended use in the IIASA EPIC-GLOBIOM model cluster. Our approach helps targeting future efforts at improving GGCM accuracy and would achieve highest efficiency if combined with traditional field-scale evaluation and sensitivity analysis.

Cod liver oil supplement consumption and health: cross-sectional results from the EPIC-Norfolk cohort study.

PubMed

Lentjes, Marleen A H; Welch, Ailsa A; Mulligan, Angela A; Luben, Robert N; Wareham, Nicholas J; Khaw, Kay-Tee

2014-10-16

Supplement users (SU) make healthy lifestyle choices; on the other hand, SU report more medical conditions. We hypothesised that cod liver oil (CLO) consumers are similar to non-supplement users, since CLO use might originate from historical motives, i.e., rickets prevention, and not health consciousness. CLO consumers were studied in order to identify possible confounders, such as confounding by indication. The European Prospective Investigation into Cancer (EPIC) investigates causes of chronic disease. The participants were 25,639 men and women, aged 40-79 years, recruited from general practices in Norfolk, East-Anglia (UK). Participants completed questionnaires and a health examination between 1993 and 1998. Supplement use was measured using 7-day diet diaries. CLO was the most common supplement used, more prevalent among women and associated with not smoking, higher physical activity level and more favourable eating habits. SU had a higher occurrence of benign growths and bone-related diseases, but CLO was negatively associated with cardiovascular-related conditions. Although the results of SU characteristics in EPIC-Norfolk are comparable with studies worldwide, the CLO group is different from SU in general. Confounding by indication takes place and will need to be taken into account when analysing prospective associations of CLO use with fracture risk and cardiovascular diseases.

Facial trauma in the Trojan War.

PubMed

Ralli, Ioanna; Stathopoulos, Panagiotis; Mourouzis, Konstantinos; Piagkou, Mara; Rallis, George

2015-06-01

The Iliad and Odyssey of Homer represent the cornerstones of classical Greek literature and subsequently the foundations of literature of the Western civilization. The Iliad, particularly, is the most famous and influential epic poem ever conceived and is considered to be the most prominent and representative work of the ancient Greek epic poetry. We present the injuries that involve the face, mentioned so vividly in the Iliad, and discuss the aetiology of their extraordinary mortality rate. We recorded the references of the injuries, the attacker and defender involved, the weapons that were used, the site and the result of the injury. The face was involved in 21 trauma cases. The frontal area was traumatized in 7 cases; the oral cavity in 6; the auricular area in 4; the orbits and the retromandibular area in 3; the mandible and the nose in 2; and the maxilla, the submental and the buccal area in 1, respectively. The mortality rate concerning the facial injuries reaches 100%. Homer's literate dexterity, charisma and his unique aptitude in the narration of the events of the Trojan War have established him as the greatest epic poet. We consider the study of these vibrantly described events to be recreational and entertaining for everyone but especially for a surgeon.

Microsomal triglyceride transfer protein -164 T > C gene polymorphism and risk of cardiovascular disease: results from the EPIC-Potsdam case-cohort study.

PubMed

di Giuseppe, Romina; Pechlivanis, Sonali; Fisher, Eva; Arregui, Maria; Weikert, Beate; Knüppel, Sven; Buijsse, Brian; Fritsche, Andreas; Willich, Stefan N; Joost, Hans-Georg; Boeing, Heiner; Moebus, Susanne; Weikert, Cornelia

2013-01-29

The microsomal triglyceride transfer protein (MTTP) is encoded by the MTTP gene that is regulated by cholesterol in humans. Previous studies investigating the effect of MTTP on ischemic heart disease have produced inconsistent results. Therefore, we have tested the hypothesis that the rare allele of the -164T > C polymorphism in MTTP alters the risk of cardiovascular disease (CVD), depending on the cholesterol levels. The -164T > C polymorphism was genotyped in a case-cohort study (193 incident myocardial infarction (MI) and 131 incident ischemic stroke (IS) cases and 1 978 non-cases) nested within the European Prospective Investigation into Cancer and Nutrition (EPIC)-Potsdam study, comprising 27 548 middle-aged subjects. The Heinz Nixdorf Recall study (30 CVD cases and 1 188 controls) was used to replicate our findings. Genotype frequencies were not different between CVD and CVD free subjects (P = 0.79). We observed an interaction between the -164T > C polymorphism and total cholesterol levels in relation to future CVD. Corresponding stratified analyses showed a significant increased risk of CVD (HR(additve) = 1.38, 95% CI: 1.07 to 1.78) for individuals with cholesterol levels <200 mg/dL in the EPIC-Potsdam study. HR(additive) was 1.06, 95% CI: 0.33 to 3.40 for individuals in the Heinz Nixdorf Recall study. A borderline significant decrease in CVD risk was observed in subjects with cholesterol levels ≥ 200 mg/dL (HR(additve) = 0.77, 95% CI: 0.58 to 1.03) in the EPIC-Potsdam study. A similar trend was observed in the independent cohort (HR(additve) = 0.60, 95% CI: 0.29 to 1.25). Our study suggests an interaction between MTTP -164T > C functional polymorphism with total cholesterol levels. Thereby risk allele carriers with low cholesterol levels may be predisposed to an increased risk of developing CVD, which seems to be abolished among risk allele carriers with high cholesterol levels.

Electrically Variable or Programmable Nonvolatile Capacitors

NASA Technical Reports Server (NTRS)

Shangqing, Liu; NaiJuan, Wu; Ignatieu, Alex; Jianren, Li

2009-01-01

Electrically variable or programmable capacitors based on the unique properties of thin perovskite films are undergoing development. These capacitors show promise of overcoming two important deficiencies of prior electrically programmable capacitors: Unlike in the case of varactors, it is not necessary to supply power continuously to make these capacitors retain their capacitance values. Hence, these capacitors may prove useful as components of nonvolatile analog and digital electronic memories. Unlike in the case of ferroelectric capacitors, it is possible to measure the capacitance values of these capacitors without changing the values. In other words, whereas readout of ferroelectric capacitors is destructive, readout of these capacitors can be nondestructive. A capacitor of this type is a simple two terminal device. It includes a thin film of a suitable perovskite as the dielectric layer, sandwiched between two metal or metal oxide electrodes (for example, see Figure 1). The utility of this device as a variable capacitor is based on a phenomenon, known as electrical-pulse-induced capacitance (EPIC), that is observed in thin perovskite films and especially in those thin perovskite films that exhibit the colossal magnetoresistive (CMR) effect. In EPIC, the application of one or more electrical pulses that exceed a threshold magnitude (typically somewhat less than 1 V) gives rise to a nonvolatile change in capacitance. The change in capacitance depends on the magnitude duration, polarity, and number of pulses. It is not necessary to apply a magnetic field or to cool the device below (or heat it above) room temperature to obtain EPIC. Examples of suitable CMR perovskites include Pr(1-x)Ca(x)MnO3, La(1-x)S-r(x)MnO3,and Nb(1-x)Ca(x)MnO3. Figure 2 is a block diagram showing an EPIC capacitor connected to a circuit that can vary the capacitance, measure the capacitance, and/or measure the resistance of the capacitor.

Are Self-report Measures Able to Define Individuals as Physically Active or Inactive?

PubMed

Steene-Johannessen, Jostein; Anderssen, Sigmund A; van der Ploeg, Hidde P; Hendriksen, Ingrid J M; Donnelly, Alan E; Brage, Søren; Ekelund, Ulf

2016-02-01

Assess the agreement between commonly used self-report methods compared with objectively measured physical activity (PA) in defining the prevalence of individuals compliant with PA recommendations. Time spent in moderate and vigorous PA (MVPA) was measured at two time points in 1713 healthy individuals from nine European countries using individually calibrated combined heart rate and movement sensing. Participants also completed the Recent Physical Activity Questionnaire (RPAQ), short form of the International Physical Activity Questionnaire (IPAQ), and short European Prospective Investigation into Cancer and Nutrition Physical Activity Questionnaire (EPIC-PAQ). Individuals were categorized as active (e.g., reporting ≥150 min of MVPA per week) or inactive, based on the information derived from the different measures. Sensitivity and specificity analyses and Kappa statistics were performed to evaluate the ability of the three PA questionnaires to correctly categorize individuals as active or inactive. Prevalence estimates of being sufficiently active varied significantly (P for all <0.001) between self-report measures (IPAQ 84.2% [95% confidence interval {CI}, 82.5-85.9], RPAQ 87.6% [95% CI, 85.9-89.1], EPIC-PAQ 39.9% [95% CI, 37.5-42.1] and objective measure 48.5% [95% CI, 41.6-50.9]. All self-report methods showed low or moderate sensitivity (IPAQ 20.0%, RPAQ 18.7%, and EPIC-PAQ 69.8%) to correctly classify inactive people and the agreement between objective and self-reported PA was low (ĸ = 0.07 [95% CI, 0.02-0.12], 0.12 [95% CI, 0.06-0.18], and 0.19 [95% CI, 0.13-0.24] for IPAQ, RPAQ, and EPIC-PAQ, respectively). The modest agreement between self-reported and objectively measured PA suggests that population levels of PA derived from self-report should be interpreted cautiously. Implementation of objective measures in large-scale cohort studies and surveillance systems is recommended.

The InterAct Project: An Examination of the Interaction of Genetic and Lifestyle Factors on the Incidence of Type 2 Diabetes in the EPIC Study

PubMed Central

Langenberg, C; Sharp, S; Forouhi, NG; Franks, P; Schulze, MB; Kerrison, N; Ekelund, U; Barroso, I; Panico, S; Tormo, M; Spranger, J; Griffin, S; van der Schouw, YT; Amiano, P; Ardanaz, E; Arriola, L; Balkau, B; Barricarte, A; Beulens, JWJ; Boeing, H; Bueno-de-Mesquita, HB; Buijsse, BB; Chirlaque Lopez, MD; Clavel-Chapelon, F; Crowe, FL; de Lauzon-Guillan, B; Deloukas, P; Dorronsoro, M; Drogan, DD; Froguel, P; Gonzalez, C; Grioni, S; Groop, L; Groves, C; Hainaut, P; Halkjaer, J; Hallmans, G; Hansen, T; Kaaks, R; Key, TJ; Khaw, K; Koulman, A; Mattiello, A; Navarro, C; Nilsson, P; Norat, T; Overvad, K; Palla, L; Palli, D; Pedersen, O; Peeters, PH; Quirós, JR; Ramachandran, A; Rodriguez-Suarez, L; Rolandsson, O; Romaguera, D; Romieu, I; Sacerdote, C; Sánchez, M; Sandbaek, A; Slimani, N; Sluijs, I; Spijkerman, AMW; Teucher, B; Tjonneland, A; Tumino, R; van der A, DL; Verschuren, WMM; Tuomilehto, J; Feskens, E; McCarthy, M; Riboli, E; Wareham, NJ

2014-01-01

Background Studying gene-lifestyle interaction may help to identify lifestyle factors that modify genetic susceptibility and uncover genetic loci exerting important subgroup effects. Adequately powered studies with prospective, unbiased, standardised assessment of key behavioural factors for gene-lifestyle studies are lacking. Objective To establish a type 2 diabetes case-cohort study designed to investigate how genetic and potentially modifiable lifestyle and behavioral factors, particularly diet and physical activity, interact in their influence on the risk of developing type 2 diabetes. Methods Funded by the Sixth European Framework Programme, InterAct consortium partners ascertained and verified incident cases of type 2 diabetes occurring in European Prospective Investigation into Cancer and Nutrition (EPIC) cohorts between 1991 and 2007 from 8 of the 10 EPIC countries. A pragmatic, high sensitivity approach was used for case ascertainment including multiple sources at each EPIC centre, followed by diagnostic verification. Prentice-weighted Cox regression and random effects meta-analyses were used to investigate differences in diabetes incidence by age and sex. Results A total of 12,403 verified incident cases of type 2 diabetes occurred during 3.99 million person-years of follow-up of 340,234 EPIC participants eligible for InterAct. We defined a centre stratified subcohort of 16,154 individuals for comparative analyses. Individuals with incident diabetes that were randomly selected into the subcohort (n=778) were included as cases in the analyses. All prevalent diabetes cases were excluded from the study. InterAct cases were followed-up for an average of 6.9 years, 49.7% were men. Mean baseline age and age at diagnosis were 55.6 and 62.5 years, mean BMI and waist were 29.4 kg/m2 and 102.7 cm in men, and 30.1 kg/m2 and 92.8 cm in women, respectively. Risk of type 2 diabetes increased linearly with age, with an overall hazard ratio (95% CI) of 1.56 (1.48; 1.64) for a 10 year age difference, adjusted for sex. A male excess in the risk of incident diabetes was consistently observed across all countries, with a pooled hazard ratio of 1.51 (1.39; 1.64), adjusted for age. Conclusions InterAct is a large, well powered, prospective study which will inform our understanding of the interplay between genes and lifestyle factors on the risk of type 2 diabetes development. PMID:21717116

Integrated drought risk assessment of multi-hazard-affected bodies based on copulas in the Taoerhe Basin, China

NASA Astrophysics Data System (ADS)

Wang, Rui; Zhang, Jiquan; Guo, Enliang; Alu, Si; Li, Danjun; Ha, Si; Dong, Zhenhua

2018-02-01

Along with global warming, drought disasters are occurring more frequently and are seriously affecting normal life and food security in China. Drought risk assessments are necessary to provide support for local governments. This study aimed to establish an integrated drought risk model based on the relation curve of drought joint probabilities and drought losses of multi-hazard-affected bodies. First, drought characteristics, including duration and severity, were classified using the 1953-2010 precipitation anomaly in the Taoerhe Basin based on run theory, and their marginal distributions were identified by exponential and Gamma distributions, respectively. Then, drought duration and severity were related to construct a joint probability distribution based on the copula function. We used the EPIC (Environmental Policy Integrated Climate) model to simulate maize yield and historical data to calculate the loss rates of agriculture, industry, and animal husbandry in the study area. Next, we constructed vulnerability curves. Finally, the spatial distributions of drought risk for 10-, 20-, and 50-year return periods were expressed using inverse distance weighting. Our results indicate that the spatial distributions of the three return periods are consistent. The highest drought risk is in Ulanhot, and the duration and severity there were both highest. This means that higher drought risk corresponds to longer drought duration and larger drought severity, thus providing useful information for drought and water resource management. For 10-, 20-, and 50-year return periods, the drought risk values ranged from 0.41 to 0.53, 0.45 to 0.59, and 0.50 to 0.67, respectively. Therefore, when the return period increases, the drought risk increases.

Upper extremity injuries in Homer's Iliad.

PubMed

Hutchison, Richard L; Hirthler, Maureen A

2013-09-01

Homer's Iliad remains a fascinating source of medical history. This epic poem, compiled around 800 BCE, describes several weeks of the last year of the 10-year siege of Troy (Ilion) by the Achaeans. Homer composed the epic by combining and formalizing oral poems, legends, customs, and experiences that originated in the later Mycenaean age (1600-1100 bce). The story centers on the rage of the great warrior Achilles. The Iliad remains the oldest record of Greek medicine and a unique source of surgical history. This study examines the upper extremity injuries described in the Iliad and compares them to those other sites of injury. Copyright © 2013 American Society for Surgery of the Hand. Published by Elsevier Inc. All rights reserved.

The impact of overactive bladder, incontinence and other lower urinary tract symptoms on quality of life, work productivity, sexuality and emotional well-being in men and women: results from the EPIC study.

PubMed

Coyne, Karin S; Sexton, Chris C; Irwin, Debra E; Kopp, Zoe S; Kelleher, Con J; Milsom, Ian

2008-06-01

To examine the effect overactive bladder (OAB) and other lower urinary tract symptoms (LUTS) on health-related quality of life (HRQoL) in a population sample, as OAB often occurs in conjunction with many other LUTS. A nested case-control analysis was performed on men and women with (cases) and without (controls) OAB, from the EPIC study. OAB was assessed using 2002 International Continence Society definitions. Based on their responses to questions about LUTS, cases were classified into five groups; continent OAB, OAB with incontinence, OAB + postmicturition, OAB + voiding, and OAB + postmicturition + voiding. Both cases and controls were asked questions about symptom bother (OAB-q), generic QoL (EQ-5D), work productivity (Work Productivity and Activity Impairment, WPAI), depressive symptoms (Center for Epidemiologic Studies Depression Scale), sexual satisfaction, and erectile dysfunction (men only) using the Massachusetts Male Aging Study. Cases answered additional condition-specific questions HRQoL (OAB-q short form), Patient Perception of Bladder Condition and work productivity related to a specific health problem (WPAI-SHP). General linear models were used to evaluate group differences. Of the EPIC participants, 1434 identified OAB cases were matched by age, gender and country, with 1434 participants designated as controls. Cases and controls were primarily Caucasian (96.2% and 96.7%, respectively), and most (65%) were female; the mean age was 53.8 and 53.7 years, respectively. Comorbid conditions differed significantly by case/control status, with cases reporting significantly greater rates of chronic constipation, asthma, diabetes, high blood pressure, bladder or prostate cancer, neurological conditions and depression. There were significant differences between the cases and controls in all reported LUTS. The OAB + postmicturition + voiding group reported significantly greater symptom bother, worse HRQoL, higher rates of depression and decreased enjoyment of sexual activity, than the other subgroups. OAB has a substantial, multidimensional impact on patients; OAB with additional LUTS has a greater impact. The diagnosis and treatment of OAB should be considered in conjunction with other LUTS, to maximize treatment options and optimize patient outcomes.

Global Magnetosphere Modeling With Kinetic Treatment of Magnetic Reconnection

NASA Astrophysics Data System (ADS)

Toth, G.; Chen, Y.; Gombosi, T. I.; Cassak, P.; Markidis, S.; Peng, B.; Henderson, M. G.

2017-12-01

Global magnetosphere simulations with a kinetic treatment of magnetic reconnection are very challenging because of the large separation of global and kinetic scales. We have developed two algorithms that can overcome these difficulties: 1) the two-way coupling of the global magnetohydrodynamic code with an embedded particle-in-cell model (MHD-EPIC) and 2) the artificial increase of the ion and electron kinetic scales. Both of these techniques improve the efficiency of the simulations by many orders of magnitude. We will describe the techniques and show that they provide correct and meaningful results. Using the coupled model and the increased kinetic scales, we will present global magnetosphere simulations with the PIC domains covering the dayside and/or tail reconnection sites. The simulation results will be compared to and validated with MMS observations.

New planetary boundary layer parametrization in ECHAM5-HAM: Dynamical refinement of the vertical resolution

NASA Astrophysics Data System (ADS)

Siegenthaler-Le Drian, C.; Spichtinger, P.; Lohmann, U.

2010-09-01

Marine stratocumulus-capped boundary layers exhibit a strong net cooling impact on the Earth-Atmosphere system. Moreover, they are highly persistent over subtropical oceans. Therefore climate models need to represent them well in order to make reliable projections of future climate. One of the reasons for the absence of stratocumuli in the general circulation model ECHAM5-HAM (Roeckner et al., 2003; Stier et al., 2005) is due to the limited vertical resolution. In the current model version, no vertical sub-grid scale variability of clouds is taken into account, such that clouds occupy the full vertical layer. Around the inversion on top of the planetary boundary layer (PBL), conserved variables often have a steep gradient, which in a GCM may produce large discretization errors (Bretherton and Park, 2009). This inversion has a large diurnal cycle and varies with location around the globe, which is difficult to represent in a classical, coarse Eulerian approach. Furthermore, Lenderink and Holtslag (2000) and Lock (2001) showed that an inconsistent numerical representation between the entrainment parametrization and the other schemes, particularly with the vertical advection can lead to the occurrence of 'numerical entrainment'. The problem can be resolved by introducing a dynamical inversion as introduced by Grenier and Bretherton (2001) and Lock (2001). As these features can be seen in our version of ECHAM5-HAM, our implementation is aimed to reduce the numerical entrainment and to better represent stratocumuli in ECHAM5-HAM. To better resolve stratocumulus clouds, their inversion and the interaction between the turbulent diffusion and the vertical advection, the vertical grid is dynamically refined. The new grid is based on the reconstruction of the profiles of variables experiencing a sharp gradient (temperature, mixing ratio) applying the method presented in Grenier and Bretherton (2001). In typical stratocumulus regions, an additional grid level is thus associated with the PBL top. In case a cloud can be formed, a new level is associated with the lifting condensation level as well. The regular grid plus the two additional levels define the new dynamical grid, which varies geographically and temporally. The physical processes are computed on this new dynamical grid, Consequently, the sharp gradients and the interaction between the different processes can be better resolved. Some results of this new parametrization will be presented. On a single column model set-up, the reconstruction method accurately finds the inversion at the PBL top for the EPIC stratocumulus case. Also, on a global scale, the occurrence of a successful reconstruction, which is restricted in typical stratocumulus regions, occurs with a high frequency. The impact of the new dynamical grid on clouds and the radiation balance will be presented in the talk. References [Bretherton and Park, 2009] Bretherton, C. S. and Park, S. (2009). A new moist turbulence parametrization in the community atmosphere model. J. Climate, 22:3422-3448. [Grenier and Bretherton, 2001] Grenier, H. and Bretherton, C. S. (2001). A moist parametrization for large-scale models and its application to subtropical cloud-topped marine boundary layers. Mon. Wea. Rev., 129:357-377. [Lenderink and Holtslag, 2000] Lenderink, G. and Holtslag, A. M. (2000). Evaluation of the kinetic energy approach for modeling turbulent fluxes in stratocumulus. Mon. Wea. Rev., 128:244-258. [Lock, 2001] Lock, A. P. (2001). The numerical representation of entrainment in parametrizations of boundary layer turbulent mixing. Mon. Wea. Rev., 129:1148-1163. [Roeckner et al., 2003] Roeckner, E., Bäuml, G., Bonaventura, L. et al. (2003). The atmospheric general circulation model echam5, part I: Model description. Technical Report 349, Max-Planck-Institute for Meteorology, Hamburg,Germany. [Stier et al., 2005] Stier, P., Feichter, J., Kinne, S. et al. (2005). The aerosol-climate model ECHAM5-HAM. Atmos. Chem. Phys., 5:1125-1156.

Talking About Your Science Is Just Like Talking About Yourself (Warning: You May Be Difficult to Explain)

NASA Astrophysics Data System (ADS)

Bitter, C.

2016-12-01

Talking about your science is just like talking about yourself (although you may be difficult to explain). You are not alone, and even the most famous scientists and engineers struggle because parts of our work are hard to explain. We'll explore the BIG stuff like the best ways to tackle the Scale of the Universe for the public, REALLY big numbers for little kids, and crowd favorites like Deep Time and Climate Change. We'll sweat the small stuff too like subatomic particles, and the unseeables but knowables like exoplanets, ground water and dark matter. Through case studies spanning over a decade of working with and observing scientists and engineers in public programming, education, outreach, and working groups for communicating science through museum exhibits, discover why the best science communicators are straightforward, curious, great storytellers and use everyday objects, humor, excitement and fun to share concepts. We'll examine a few epic fails too, and how to recover, as well as helping your audience feel truly accomplished after communicating with you.

Explosion-induced stress changes estimated from vibrating-wire stressmeter measurements near the Mighty Epic event, Nevada Test Site

USGS Publications Warehouse

Ellis, William L.; Kibler, J.D.

1983-01-01

Explosion-induced compressive stress increases near an underground nuclear explosion are believed to contribute significantly to the containment of high-pressure gases within the explosion-produced cavity. These induced compressive stresses are predicted by computer calculations, but have never been adequately confirmed by field measurements, owing primarily to the unique difficulties of obtaining such field data. Vibrating-wire stressmeter measurements made near the Mighty Epic nuclear detonation, however, qualitatively indicate that within 150 meters of the working point, permanent compressive stress increases of several megapascals were present 15 weeks after the event. Additionally, stress-change magnitudes interpreted from the stressmeter data between the 75- and 260-meter range from the working point compare favorably with calculational predictions of the stress changes believed to be present shortly after detonation of the event. The measurements and calculations differ, however, with regard to the pattern of stress change radial and transverse to the explosion source. For the range of the field measurements from the working point, computer models predict the largest compressive-stress increase to be radial to the explosion source, while the field data indicate the transverse component of. stress change to be the most compressive. The significance of time-dependent modification of the initial explosion-induced stress distribution is, however, uncertain with regard to the comparison of the field measurements and theoretical predictions.

Weather, day length and physical activity in older adults: Cross-sectional results from the European Prospective Investigation into Cancer and Nutrition (EPIC) Norfolk Cohort.

PubMed

Wu, Yu-Tzu; Luben, Robert; Wareham, Nicholas; Griffin, Simon; Jones, Andy P

2017-01-01

A wide range of environmental factors have been related to active ageing, but few studies have explored the impact of weather and day length on physical activity in older adults. We investigate the cross-sectional association between weather conditions, day length and activity in older adults using a population-based cohort in England, the European Prospective Investigation into Cancer and Nutrition (EPIC) Norfolk study. Physical activity was measured objectively over 7 days using an accelerometer and this was used to calculate daily total physical activity (counts per minute), daily minutes of sedentary behaviour and light, moderate and vigorous physical activity (LMVPA). Day length and two types of weather conditions, precipitation and temperature, were obtained from a local weather station. The association between these variables and physical activity was examined by multilevel first-order autoregressive modelling. After adjusting for individual factors, short day length and poor weather conditions, including high precipitation and low temperatures, were associated with up to 10% lower average physical activity (p<0.01) and 8 minutes less time spent in LMVPA but 15 minutes more sedentary time, compared to the best conditions. Day length and weather conditions appear to be an important factor related to active ageing. Future work should focus on developing potential interventions to reduce their impact on physical activity behaviours in older adults.

Evidence of Spin and Energy Extraction in a Galactic Black Hole Candidate: The XMM-NEWTON/EPIC SPECTRUM of XTE 11650-500

NASA Technical Reports Server (NTRS)

Miller, J. M.; Fabian, A. C.; Wunands, R.; Reynolds, C. S.; Ehle, M.; Freyberg, M. J.; VanDerKlis, M.; Lewin, W. H. G.; Sanchez-Fernandez, C.; Castro-Tirado, A. J.

2002-01-01

We observed the Galactic black hole candidate XTE J1650-500 early in its fall of 2001 outburst with the XMM-Newton European Photon Imaging pn Camera (EPIC-pn). The observed spectrum is consistent with the source having been in the very high state. We h d a broad, skewed Fe Kar emission line that suggests the primary in this system may be a Kerr black hole and that indicates a steep disk emissivity profile that is hard to explain in terms of a standard accretion disk model. These results are quantitatively and qualitatively similar to those from an XMM-Newton observation of the Seyfert galaxy MCG -6-30-15. The steep emissivity in MCG -6-30-15 may be explained by the extraction and dissipation of rotational energy from a black hole with nearly maximal angular momentum or from material in the plunging region via magnetic connections to the inner accretion disk. If this process is at work in both sources, an exotic but fundamental general relativistic prediction may be confirmed across a factor of l0(exp 6) in black hole mass. We discuss these results in terms of the accretion flow geometry in stellar-mass black holes and the variety of enigmatic phenomena often observed in the very high state.

Metabolic Mediators of the Association Between Adult Weight Gain and Colorectal Cancer: Data From the European Prospective Investigation into Cancer and Nutrition (EPIC) Cohort

PubMed Central

Aleksandrova, Krasimira; Schlesinger, Sabrina; Fedirko, Veronika; Jenab, Mazda; Bueno-de-Mesquita, Bas; Freisling, Heinz; Romieu, Isabelle; Pischon, Tobias; Kaaks, Rudolf; Gunter, Marc J.; Dahm, Christina C.; Overvad, Kim; Rostgaard-Hansen, Agnetha Linn; Tjønneland, Anne; Trichopoulou, Antonia; Bamia, Christina; Lagiou, Pagona; Agnoli, Claudia; Mattiello, Amalia; Bradbury, Kathryn; Khaw, Kay-Tee; Riboli, Elio; Boeing, Heiner

2017-01-01

Abstract Evidence indicates that gaining weight in adult life is associated with an elevated risk of colorectal cancer; however, biological mechanisms that may explain this association remain unclear. We evaluated the mediation effect of 20 different biomarkers on the relationship between adult weight gain and colorectal cancer, using data from a prospective nested case-control study of 452 incident cases diagnosed between 1992 and 2003 and matched within risk sets to 452 controls within the European Prospective Investigation into Cancer and Nutrition (EPIC) cohort. The proportions of mediated effects (%) were estimated on the basis of differences in percent effect changes in conditional logistic regression models with and without additional adjustment for individual biomarkers. Greater adult weight gain (≥300 g/year vs. <300 g/year) was associated with a higher risk of colon cancer (multivariable-adjusted relative risk = 1.54, 95% confidence interval: 1.07, 2.24) but not rectal cancer (relative risk = 1.07, 95% confidence interval: 0.68, 1.66). This association was accounted for mostly by attained waist circumference (reduction of 61%) and by the biomarkers soluble leptin receptor (reduction of 43%) and glycated hemoglobin (reduction of 28%). These novel data suggest that the observed association between adult weight gain and colon cancer could be primarily explained by attained abdominal fatness and biomarkers of metabolic dysfunction. PMID:28387787

Advanced Data Acquisition System Implementation for the ITER Neutron Diagnostic Use Case Using EPICS and FlexRIO Technology on a PXIe Platform

NASA Astrophysics Data System (ADS)

Sanz, D.; Ruiz, M.; Castro, R.; Vega, J.; Afif, M.; Monroe, M.; Simrock, S.; Debelle, T.; Marawar, R.; Glass, B.

2016-04-01

To aid in assessing the functional performance of ITER, Fission Chambers (FC) based on the neutron diagnostic use case deliver timestamped measurements of neutron source strength and fusion power. To demonstrate the Plant System Instrumentation & Control (I&C) required for such a system, ITER Organization (IO) has developed a neutron diagnostics use case that fully complies with guidelines presented in the Plant Control Design Handbook (PCDH). The implementation presented in this paper has been developed on the PXI Express (PXIe) platform using products from the ITER catalog of standard I&C hardware for fast controllers. Using FlexRIO technology, detector signals are acquired at 125 MS/s, while filtering, decimation, and three methods of neutron counting are performed in real-time via the onboard Field Programmable Gate Array (FPGA). Measurement results are reported every 1 ms through Experimental Physics and Industrial Control System (EPICS) Channel Access (CA), with real-time timestamps derived from the ITER Timing Communication Network (TCN) based on IEEE 1588-2008. Furthermore, in accordance with ITER specifications for CODAC Core System (CCS) application development, the software responsible for the management, configuration, and monitoring of system devices has been developed in compliance with a new EPICS module called Nominal Device Support (NDS) and RIO/FlexRIO design methodology.

XMM-Newton Observations of NGC 253: Resolving the Emission Components in the Disk and Nuclear Area

NASA Technical Reports Server (NTRS)

Pietsch, W.; Borozdin, K. N.; Branduardi-Raymont, G.; Cappi, M.; Ehle, M.; Ferrando, P.; Freyberg, M. J.; Kahn, S. M.; Ponman, T. J.; Ptak, A.

2000-01-01

We describe the first XMM-Newton observations of the starburst galaxy NGC 253. As known from previous X-ray observations, NGC 253 shows a mixture of extended (disk and halo) and point-source emission. The high XMM-Newton throughput allows for the first time a detailed investigation of the spatial, spectral and variability properties of these components simultaneously. We detect a bright X-ray transient approx. 70 sec SSW of the nucleus and show the spectrum and light curve of the brightest point source (approx. 30 sec S of the nucleus, most likely a black-hole X-ray binary, BHXRB). The unprecedented combination of RGS and EPIC also sheds new light on the emission of the complex nuclear region, the X-ray plume and the disk diffuse emission. In particular, EPIC images reveal that the limb-brightening of the plume is mostly seen in higher ionization emission lines, while in the lower ionization lines, and below 0.5 keV, the plume is more homo- geneously structured, pointing to new interpretations as to the make up of the starburst-driven outflow. Assuming that type IIa supernova remnants (SNRs) are mostly responsible for the E greater than 4 keV emission, the detection with EPIC of the 6.7 keV line allows us to estimate a supernova rate within the nuclear starburst of 0.2 /yr.

Phytosterol plasma concentrations and coronary heart disease in the prospective Spanish EPIC cohort

PubMed Central

Escurriol, Verónica; Cofán, Montserrat; Moreno-Iribas, Concepción; Larrañaga, Nerea; Martínez, Carmen; Navarro, Carmen; Rodríguez, Laudina; González, Carlos A.; Corella, Dolores; Ros, Emilio

2010-01-01

Phytosterol intake with natural foods, a measure of healthy dietary choices, increases plasma levels, but increased plasma phytosterols are believed to be a coronary heart disease (CHD) risk factor. To address this paradox, we evaluated baseline risk factors, phytosterol intake, and plasma noncholesterol sterol levels in participants of a case control study nested within the European Prospective Investigation into Cancer and Nutrition (EPIC) Spanish cohort who developed CHD (n = 299) and matched controls (n = 584) who remained free of CHD after a 10 year follow-up. Sitosterol-to-cholesterol ratios increased across tertiles of phytosterol intake (P = 0.026). HDL-cholesterol level increased, and adiposity measures, cholesterol/HDL ratios, and levels of glucose, triglycerides, and lathosterol, a cholesterol synthesis marker, decreased across plasma sitosterol tertiles (P < 0.02; all). Compared with controls, cases had nonsignificantly lower median levels of phytosterol intake and plasma sitosterol. The multivariable-adjusted odds ratio for CHD across the lowest to highest plasma sitosterol tertile was 0.59 (95% confidence interval, 0.36–0.97). Associations were weaker for plasma campesterol. The apolipoprotein E genotype was unrelated to CHD risk or plasma phytosterols. The data suggest that plasma sitosterol levels are associated with a lower CHD risk while being markers of a lower cardiometabolic risk in the EPIC-Spain cohort, a population with a high phytosterol intake. PMID:19786566

Device Oriented Project Controller

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dalesio, Leo; Kraimer, Martin

2013-11-20

This proposal is directed at the issue of developing control systems for very large HEP projects. A de-facto standard in accelerator control is the Experimental Physics and Industrial Control System (EPICS), which has been applied successfully to many physics projects. EPICS is a channel based system that requires that each channel of each device be configured and controlled. In Phase I, the feasibility of a device oriented extension to the distributed channel database was demonstrated by prototyping a device aware version of an EPICS I/O controller that functions with the current version of the channel access communication protocol. Extensions havemore » been made to the grammar to define the database. Only a multi-stage position controller with limit switches was developed in the demonstration, but the grammar should support a full range of functional record types. In phase II, a full set of record types will be developed to support all existing record types, a set of process control functions for closed loop control, and support for experimental beam line control. A tool to configure these records will be developed. A communication protocol will be developed or extensions will be made to Channel Access to support introspection of components of a device. Performance bench marks will be made on both communication protocol and the database. After these records and performance tests are under way, a second of the grammar will be undertaken.« less

Meat intake and risk of stomach and esophageal adenocarcinoma within the European Prospective Investigation Into Cancer and Nutrition (EPIC).

PubMed

González, Carlos A; Jakszyn, Paula; Pera, Guillem; Agudo, Antonio; Bingham, Sheila; Palli, Domenico; Ferrari, Pietro; Boeing, Heiner; del Giudice, Giuseppe; Plebani, Mario; Carneiro, Fátima; Nesi, Gabriella; Berrino, Franco; Sacerdote, Carlotta; Tumino, Rosario; Panico, Salvatore; Berglund, Göran; Simán, Henrik; Nyrén, Olof; Hallmans, Göran; Martinez, Carmen; Dorronsoro, Miren; Barricarte, Aurelio; Navarro, Carmen; Quirós, José R; Allen, Naomi; Key, Timothy J; Day, Nicholas E; Linseisen, Jakob; Nagel, Gabriele; Bergmann, Manuela M; Overvad, Kim; Jensen, Majken K; Tjonneland, Anne; Olsen, Anja; Bueno-de-Mesquita, H Bas; Ocke, Marga; Peeters, Petra H M; Numans, Mattijs E; Clavel-Chapelon, Françoise; Boutron-Ruault, Marie-Christine; Trichopoulou, Antonia; Psaltopoulou, Theodora; Roukos, Dimitrios; Lund, Eiliv; Hemon, Bertrand; Kaaks, Rudolf; Norat, Teresa; Riboli, Elio

2006-03-01

Dietary factors are thought to have an important role in gastric and esophageal carcinogenesis, but evidence from cohort studies for such a role is lacking. We examined the risks of gastric cancer and esophageal adenocarcinoma associated with meat consumption within the European Prospective Investigation Into Cancer and Nutrition (EPIC) cohort. A total of 521,457 men and women aged 35-70 years in 10 European countries participated in the EPIC cohort. Dietary and lifestyle information was collected at recruitment. Cox proportional hazard models were used to examine associations between meat intake and risks of cardia and gastric non-cardia cancers and esophageal adenocarcinoma. Data from a calibration substudy were used to correct hazard ratios (HRs) and 95% confidence intervals (CIs) for diet measurement errors. In a nested case-control study, we examined interactions between Helicobacter pylori infection status (i.e., plasma H. pylori antibodies) and meat intakes. All statistical tests were two-sided. During a mean follow-up of 6.5 years, 330 gastric adenocarcinoma and 65 esophageal adenocarcinomas were diagnosed. Gastric non-cardia cancer risk was statistically significantly associated with intakes of total meat (calibrated HR per 100-g/day increase = 3.52; 95% CI = 1.96 to 6.34), red meat (calibrated HR per 50-g/day increase = 1.73; 95% CI = 1.03 to 2.88), and processed meat (calibrated HR per 50-g/day increase = 2.45; 95% CI = 1.43 to 4.21). The association between the risk of gastric non-cardia cancer and total meat intake was especially large in H. pylori-infected subjects (odds ratio per 100-g/day increase = 5.32; 95% CI = 2.10 to 13.4). Intakes of total, red, or processed meat were not associated with the risk of gastric cardia cancer. A positive but non-statistically significant association was observed between esophageal adenocarcinoma cancer risk and total and processed meat intake in the calibrated model. In this study population, the absolute risk of development of gastric adenocarcinoma within 10 years for a study subject aged 60 years was 0.26% for the lowest quartile of total meat intake and 0.33% for the highest quartile of total meat intake. Total, red, and processed meat intakes were associated with an increased risk of gastric non-cardia cancer, especially in H. pylori antibody-positive subjects, but not with cardia gastric cancer.

Novel Biomarkers to Improve the Prediction of Cardiovascular Event Risk in Type 2 Diabetes Mellitus.

PubMed

van der Leeuw, Joep; Beulens, Joline W J; van Dieren, Susan; Schalkwijk, Casper G; Glatz, Jan F C; Hofker, Marten H; Verschuren, W M Monique; Boer, Jolanda M A; van der Graaf, Yolanda; Visseren, Frank L J; Peelen, Linda M; van der Schouw, Yvonne T

2016-05-31

We evaluated the ability of 23 novel biomarkers representing several pathophysiological pathways to improve the prediction of cardiovascular event (CVE) risk in patients with type 2 diabetes mellitus beyond traditional risk factors. We used data from 1002 patients with type 2 diabetes mellitus from the Second Manifestations of ARTertial disease (SMART) study and 288 patients from the European Prospective Investigation into Cancer and Nutrition-NL (EPIC-NL). The associations of 23 biomarkers (adiponectin, C-reactive protein, epidermal-type fatty acid binding protein, heart-type fatty acid binding protein, basic fibroblast growth factor, soluble FMS-like tyrosine kinase-1, soluble intercellular adhesion molecule-1 and -3, matrix metalloproteinase [MMP]-1, MMP-3, MMP-9, N-terminal prohormone of B-type natriuretic peptide, osteopontin, osteonectin, osteocalcin, placental growth factor, serum amyloid A, E-selectin, P-selectin, tissue inhibitor of MMP-1, thrombomodulin, soluble vascular cell adhesion molecule-1, and vascular endothelial growth factor) with CVE risk were evaluated by using Cox proportional hazards analysis adjusting for traditional risk factors. The incremental predictive performance was assessed with use of the c-statistic and net reclassification index (NRI; continuous and based on 10-year risk strata 0-10%, 10-20%, 20-30%, >30%). A multimarker model was constructed comprising those biomarkers that improved predictive performance in both cohorts. N-terminal prohormone of B-type natriuretic peptide, osteopontin, and MMP-3 were the only biomarkers significantly associated with an increased risk of CVE and improved predictive performance in both cohorts. In SMART, the combination of these biomarkers increased the c-statistic with 0.03 (95% CI 0.01-0.05), and the continuous NRI was 0.37 (95% CI 0.21-0.52). In EPIC-NL, the multimarker model increased the c-statistic with 0.03 (95% CI 0.00-0.03), and the continuous NRI was 0.44 (95% CI 0.23-0.66). Based on risk strata, the NRI was 0.12 (95% CI 0.03-0.21) in SMART and 0.07 (95% CI -0.04-0.17) in EPIC-NL. Of the 23 evaluated biomarkers from different pathophysiological pathways, N-terminal prohormone of B-type natriuretic peptide, osteopontin, MMP-3, and their combination improved CVE risk prediction in 2 separate cohorts of patients with type 2 diabetes mellitus beyond traditional risk factors. However, the number of patients reclassified to a different risk stratum was limited. © 2016 The Authors. Published on behalf of the American Heart Association, Inc., by Wiley Blackwell.

A rule-based expert system for generating control displays at the Advanced Photon Source

NASA Astrophysics Data System (ADS)

Coulter, Karen J.

1994-12-01

The integration of a rule-based expert system for generating screen displays for controlling and monitoring instrumentation under the Experimental Physics and Industrial Control System (EPICS) is presented. The expert system is implemented using CLIPS, an expert system shell from the Software Technology Branch at Lyndon B. Johnson Space Center. The user selects the hardware input and output to be displayed and the expert system constructs a graphical control screen appropriate for the data. Such a system provides a method for implementing a common look and feel for displays created by several different users and reduces the amount of time required to create displays for new hardware configurations. Users are able to modify the displays as needed using the EPICS display editor tool.

ChAMP: updated methylation analysis pipeline for Illumina BeadChips.

PubMed

Tian, Yuan; Morris, Tiffany J; Webster, Amy P; Yang, Zhen; Beck, Stephan; Feber, Andrew; Teschendorff, Andrew E

2017-12-15

The Illumina Infinium HumanMethylationEPIC BeadChip is the new platform for high-throughput DNA methylation analysis, effectively doubling the coverage compared to the older 450 K array. Here we present a significantly updated and improved version of the Bioconductor package ChAMP, which can be used to analyze EPIC and 450k data. Many enhanced functionalities have been added, including correction for cell-type heterogeneity, network analysis and a series of interactive graphical user interfaces. ChAMP is a BioC package available from https://bioconductor.org/packages/release/bioc/html/ChAMP.html. a.teschendorff@ucl.ac.uk or s.beck@ucl.ac.uk or a.feber@ucl.ac.uk. Supplementary data are available at Bioinformatics online. © The Author(s) 2017. Published by Oxford University Press.

Relationship Between Neck Circumference and Epicardial Fat Thickness in a Healthy Male Population.

PubMed

Küçük, Uğur; Küçük, Hilal Olgun; Cüce, Ferhat; Balta, Sevket

2016-09-01

Epicardial fat is an upper body visceral fat depot that may play a significant role in the development of adverse metabolic and cardiovascular risk profiles. There is a significant direct relationship between the amount of epicardial fat and general body adiposity (body mass index, BMI), but data regarding subcutaneous adiposity is limited. We conducted a study to determine the association between neck circumference and epicardial fat thickness in healthy young male individuals, and assess their individual correlations with general body adiposity and cardiometabolic risk factors. One hundred consecutive male patients aged 18 years or older with no known major medical conditions were included in the study. All participants underwent detailed physical examination including measurement of blood pressure, weight, height, waist/hip ratio, and neck circumference. Blood was collected to determine fasting glucose and lipid parameters. A standard echocardiographic examination was performed with additional epicardial fat thickness determination. Among 100 study participants, neck circumference correlated significantly with weight, waist circumference, BMI, blood glucose, serum total cholesterol, low-density (LDL)-cholesterol, and triglycerides levels. No significant correlation was found between neck circumference and high-density lipoprotein (HDL)-cholesterol levels. Neck circumference correlated moderately and positively with echocardiographic epicardial fat thickness. Among patients with low cardiometabolic risk, increased neck circumference was associated with increased epicardial fat thickness. A gordura epicárdica é um depósito de gordura visceral na parte superior do organismo que pode desempenhar um papel importante no desenvolvimento de perfis cardiovasculares e metabólicos adversos. Há uma relação direta significativa entre a quantidade de gordura epicárdica e a adiposidade corporal geral (índice de massa corporal, IMC), mas dados sobre a adiposidade subcutânea são limitados. Realizamos um estudo para determinar a associação entre a circunferência do pescoço e a espessura da gordura epicárdica em jovens saudáveis do sexo masculino, além de avaliar as suas correlações individuais com a adiposidade corporal geral e fatores de risco cardiometabólicos. Cem pacientes consecutivos do sexo masculino com idade igual ou superior a 18 anos e sem nenhuma condição médica importante e conhecida foram incluídos no estudo. Todos os participantes foram submetidos a um exame físico detalhado que incluiu medida da pressão arterial, peso, altura, razão cintura/quadril e circunferência do pescoço. Sangue foi coletado para determinação da glicemia de jejum e parâmetros lipídicos. Um exame ecocardiográfico padrão foi realizado com determinação adicional da espessura da gordura epicárdica. Entre os 100 participantes do estudo, a circunferência do pescoço mostrou correlação significativa com o peso, circunferência de cintura, IMC, glicemia e níveis séricos de colesterol total, lipoproteína de baixa densidade (LDL-colesterol) e triglicerídeos. Não foi observada correlação significativa entre a circunferência do pescoço e níveis de colesterol de alta densidade (HDL-colesterol). A circunferência do pescoço correlacionou moderadamente e positivamente com a espessura da gordura epicárdica à ecocardiografia. Entre pacientes com baixo risco cardiometabólico, o aumento da circunferência do pescoço foi associado a um aumento da espessura da gordura epicárdica.

Chemists boldly go

NASA Astrophysics Data System (ADS)

Francl, Michelle; Donnay, Michael

2017-01-01

Michael Donnay and Michelle Francl want chemists to share the stories behind the work they do, and not be afraid to identify the heroines and heroes -- and their epic adventures -- that paved the way.

Monte Carlo simulations of soft proton flares: testing the physics with XMM-Newton

NASA Astrophysics Data System (ADS)

Fioretti, Valentina; Bulgarelli, Andrea; Malaguti, Giuseppe; Spiga, Daniele; Tiengo, Andrea

2016-07-01

Low energy protons (< 100 - 300 keV) in the Van Allen belt and the outer regions can enter the field of view of X-ray focusing telescopes, interact with the Wolter-I optics, and reach the focal plane. The funneling of soft protons was discovered after the damaging of the Chandra/ACIS Front-Illuminated CCDs in September 1999 after the first passages through the radiation belt. The use of special filters protects the XMM-Newton focal plane below an altitude of 70000 km, but above this limit the effect of soft protons is still present in the form of sudden ares in the count rate of the EPIC instruments that can last from hundreds of seconds to hours and can hardly be disentangled from X-ray photons, causing the loss of large amounts of observing time. The accurate characterization of (i) the distribution of the soft proton population, (ii) the physics interaction at play, and (iii) the effect on the focal plane, are mandatory to evaluate the background and design the proton magnetic diverter on board future X-ray focusing telescopes (e.g. ATHENA). Several solutions have been proposed so far for the primary population and the physics interaction, however the difficulty in precise angle and energy measurements in laboratory makes the smoking gun still unclear. Since the only real data available is the XMM-Newton spectrum of soft proton flares in orbit, we try to characterize the input proton population and the physics interaction by simulating, using the BoGEMMS framework, the proton interaction with a simplified model of the X-ray mirror module and the focal plane, and comparing the result with a real observation. The analysis of ten orbits of observations of the EPIC/pn instrument show that the detection of flares in regions far outside the radiation belt is largely influenced by the different orientation of the Earth's magnetosphere respect with XMM-Newton'os orbit, confirming the solar origin of the soft proton population. The Equator-S proton spectrum at 70000 km altitude is used for the proton population entering the optics, where a combined multiple and Firsov scattering is used as physics interaction. If the thick filter is used, the soft protons in the 30-70 keV energy range are the main contributors to the simulated spectrum below 10 keV. We are able to reproduce the proton vignetting observed in real data-sets, with a 50% decrease from the inner to the outer region, but a maximum flux of 0:01 counts cm2 s-1 keV-1 is obtained below 10 keV, about 5 times lower than the EPIC/MOS detection and 100 times lower than the EPIC/pn one. Given the high variability of the are intensity, we conclude that an average spectrum, based on the analysis of a full season of soft proton events is required to compare Monte Carlo simulations with real events.

Intra-articular injection of micronized dehydrated human amnion/chorion membrane attenuates osteoarthritis development

PubMed Central

2014-01-01

Introduction Micronized dehydrated human amnion/chorion membrane (μ-dHACM) is derived from donated human placentae and has anti-inflammatory, low immunogenic and anti-fibrotic properties. The objective of this study was to quantitatively assess the efficacy of μ-dHACM as a disease modifying intervention in a rat model of osteoarthritis (OA). It was hypothesized that intra-articular injection of μ-dHACM would attenuate OA progression. Methods Lewis rats underwent medial meniscal transection (MMT) surgery to induce OA. Twenty four hours post-surgery, μ-dHACM or saline was injected intra-articularly into the rat joint. Naïve rats also received μ-dHACM injections. Microstructural changes in the tibial articular cartilage were assessed using equilibrium partitioning of an ionic contrast agent (EPIC-μCT) at 21 days post-surgery. The joint was also evaluated histologically and synovial fluid was analyzed for inflammatory markers at 3 and 21 days post-surgery. Results There was no measured baseline effect of μ-dHACM on cartilage in naïve animals. Histological staining of treated joints showed presence of μ-dHACM in the synovium along with local hypercellularity at 3 and 21 days post-surgery. In MMT animals, development of cartilage lesions at 21 days was prevented and number of partial erosions was significantly reduced by treatment with μ-dHACM. EPIC-μCT analysis quantitatively showed that μ-dHACM reduced proteoglycan loss in MMT animals. Conclusions μ-dHACM is rapidly sequestered in the synovial membrane following intra-articular injection and attenuates cartilage degradation in a rat OA model. These data suggest that intra-articular delivery of μ-dHACM may have a therapeutic effect on OA development. PMID:24499554

Life Satisfaction and Risk of Chronic Diseases in the European Prospective Investigation into Cancer and Nutrition (EPIC)-Germany Study

PubMed Central

Feller, Silke; Teucher, Birgit; Kaaks, Rudolf; Boeing, Heiner; Vigl, Matthaeus

2013-01-01

Objective The aim of the study was to examine the prospective association between life satisfaction and risk of type 2 diabetes mellitus, myocardial infarction, stroke, and cancer. Previous studies suggested that psychosocial factors may affect the development of chronic diseases but the impact of positive attitudes, in particular life satisfaction, is yet to be determined. Methods The analysis included 50,358 participants of the European Prospective Investigation into Cancer and Nutrition (EPIC)-Germany study in Potsdam and Heidelberg. Life satisfaction was assessed in a baseline interview and incident cases of chronic diseases were identified and verified during follow-up. Hazard ratios were calculated using Cox proportional hazards regression models that were systematically multivariable-adjusted for established risk factors and prevalent diseases. Results During an average of 8 years of follow-up 2,293 cases of cancer, 1,840 cases of type 2 diabetes mellitus, 440 cases of stroke, and 562 cases of myocardial infarction were observed. Women who were unsatisfied with life at baseline showed in all models a significantly increased risk of cancer (HR: 1.45; 95% CI: 1.18-1.78) and stroke (HR: 1.69; 95% CI: 1.05-2.73) as well as an increased risk of type 2 diabetes mellitus by trend across categories (p-trend=0.04) compared to women very satisfied with life. In men, a relationship between life satisfaction and stroke was found but did not persist after consideration of lifestyle factors and prevalent diseases. No significant association was observed between life satisfaction and risk of myocardial infarction. Conclusions The results of this study suggest that reduced life satisfaction is related to the development of chronic diseases—particularly in women and partly mediated by established risk factors. PMID:23977388

Dietary glycemic load and risk of cognitive impairment in women: findings from the EPIC-Naples cohort.

PubMed

Simeon, Vittorio; Chiodini, Paolo; Mattiello, Amalia; Sieri, Sabina; Panico, Camilla; Brighenti, Furio; Krogh, Vittorio; Panico, Salvatore

2015-05-01

Cognitive impairment is a common cause of morbidity in the elderly. The relationship between dietary habits and cognitive impairment in a female population living in the metropolitan area of Naples, in the Mediterranean part of Italy, has been evaluated in the Naples EPIC prospective cohort study. The study cohort, enrolled between 1993 and 1997, is composed of 5062 women aged 30-69 years. At time of enrolment anthropometric measures were performed and information about socio-demographic details, clinical data, lifestyle and dietary habits were collected. During 2008 and 2009, women 65 years of age or older received a telephone interview to evaluate cognitive status (TICS); the derived score was used as proxy of cognitive impairment. Analyses were carried out on 1514 participants. Linear regression model showed negative association between TICS score and, respectively, age at baseline (β = -.31, 95% CI -.34, -.24), body mass index (BMI) (β = -.08, 95% CI -.16, -.01), and glycemic load (GL) (β = -.02, 95% CI -.03, -.01), whereas education level (β = 0.62, 95% CI .56, .69) showed positive association. A logistic regression model, used to evaluate determinants of the low cognitive score (TICS score ≤ 15, 1st tertile), confirmed association for previous variables [age (OR 1.1, 95% CI 1.08, 1.15); BMI (OR 1.03, 95% CI 1.001, 1.07); GL (OR 1.005, 95% CI 1.001, 1.011); education level (OR .82, 95% CI .79, .84)] with, in addition, type II diabetes (OR 1.85, 95% CI 1.014, 3.4). This study indicates that GL may play a role in determining risk of cognitive impairment, besides age, BMI, education and diabetes.

Topical Beta-Blockers and Cardiovascular Mortality: Systematic Review and Meta-Analysis with Data from the EPIC-Norfolk Cohort Study

PubMed Central

Pinnock, Claude; Yip, Jennifer L. Y.; Khawaja, Anthony P.; Luben, Robert; Hayat, Shabina; Broadway, David C.; Foster, Paul J.; Khaw, Kay-Tee; Wareham, Nick

2016-01-01

ABSTRACT Purpose: To determine if topical beta-blocker use is associated with increased cardiovascular mortality, particularly among people with self-reported glaucoma. Methods: All participants who participated in the first health check (N = 25,639) of the European Prospective Investigation into Cancer (EPIC) Norfolk cohort (1993–2013) were included in this prospective cohort study, with a median follow-up of 17.0 years. We determined use of topical beta-blockers at baseline through a self-reported questionnaire and prescription check at the first clinical visit. Cardiovascular mortality was ascertained through data linkage with the Office for National Statistics mortality database. Hazard ratios (HRs) were estimated using multivariable Cox regression models. Meta-analysis of the present study’s results together with other identified literature was performed using a random effects model. Results: We did not find an association between the use of topical beta-blockers and cardiovascular mortality (HR 0.93, 95% confidence interval, CI, 0.67–1.30). In the 514 participants with self-reported glaucoma, no association was found between the use of topical beta-blockers and cardiovascular mortality (HR 0.89, 95% CI 0.56–1.40). In the primary meta-analysis of four publications, there was no evidence of an association between the use of topical beta-blockers and cardiovascular mortality (pooled HR estimate 1.10, 95% CI 0.84–1.36). Conclusion: Topical beta-blockers do not appear to be associated with excess cardiovascular mortality. This evidence does not indicate that a change in current practice is warranted, although clinicians should continue to assess individual patients and their cardiovascular risk prior to commencing topical beta-blockers. PMID:27551956

Relation of dietary glycemic load with ischemic and hemorrhagic stroke: a cohort study in Greece and a meta-analysis.

PubMed

Rossi, Marta; Turati, Federica; Lagiou, Pagona; Trichopoulos, Dimitrios; La Vecchia, Carlo; Trichopoulou, Antonia

2015-03-01

High glycemic load (GL) has been associated with excess stroke risk. Data suggest a different role of diet in the etiology of ischemic and hemorrhagic stroke. We analyzed data from 19,824 participants of the Greek cohort of the population-based European Prospective Investigation into Cancer and nutrition (EPIC), who were free of cardiovascular diseases, cancer, and diabetes at baseline and had not developed diabetes. Diet was assessed at enrollment through a validated, interviewer-administered semi-quantitative food frequency questionnaire. The average daily GL was derived using standard tables. We also conducted a meta-analysis on GL and stroke (overall, ischemic and hemorrhagic), using random-effects models. In the Greek EPIC cohort, 304 incident stroke cases were identified (67 ischemic, 49 hemorrhagic). Using Cox proportional hazards regression models adjusted for potential confounders, the hazard ratios for the highest versus the lowest GL tertiles were 1.07 [95 % confidence interval (CI) 0.74-1.54] for overall stroke, 1.55 (95 % CI 0.72-3.36) for ischemic and 0.48 (95 % CI 0.18-1.25) for hemorrhagic stroke (p-heterogeneity <0.01). The meta-analysis, including a total of 3,088 incident cases and 247 deaths from stroke (1,469 cases and 126 deaths ischemic; 576 cases and 94 deaths hemorrhagic), estimated pooled relative risks for the highest versus the lowest GL levels of 1.23 (95 % CI 1.07-1.41) for overall, 1.35 (95 % CI 1.06-1.72) for ischemic, and 1.09 (95 % CI 0.81-1.47) for hemorrhagic stroke (p-heterogeneity = 0.275). This study indicates that GL is an important determinant of the more common ischemic-though not of the hemorrhagic-stroke.

Microsomal triglyceride transfer protein -164 T > C gene polymorphism and risk of cardiovascular disease: results from the EPIC-Potsdam case-cohort study

PubMed Central

2013-01-01

Background The microsomal triglyceride transfer protein (MTTP) is encoded by the MTTP gene that is regulated by cholesterol in humans. Previous studies investigating the effect of MTTP on ischemic heart disease have produced inconsistent results. Therefore, we have tested the hypothesis that the rare allele of the -164T > C polymorphism in MTTP alters the risk of cardiovascular disease (CVD), depending on the cholesterol levels. Methods The -164T > C polymorphism was genotyped in a case-cohort study (193 incident myocardial infarction (MI) and 131 incident ischemic stroke (IS) cases and 1 978 non-cases) nested within the European Prospective Investigation into Cancer and Nutrition (EPIC)–Potsdam study, comprising 27 548 middle-aged subjects. The Heinz Nixdorf Recall study (30 CVD cases and 1 188 controls) was used to replicate our findings. Results Genotype frequencies were not different between CVD and CVD free subjects (P = 0.79). We observed an interaction between the -164T > C polymorphism and total cholesterol levels in relation to future CVD. Corresponding stratified analyses showed a significant increased risk of CVD (HRadditve = 1.38, 95% CI: 1.07 to 1.78) for individuals with cholesterol levels <200 mg/dL in the EPIC-Potsdam study. HRadditive was 1.06, 95% CI: 0.33 to 3.40 for individuals in the Heinz Nixdorf Recall study. A borderline significant decrease in CVD risk was observed in subjects with cholesterol levels ≥200 mg/dL (HRadditve = 0.77, 95% CI: 0.58 to 1.03) in the EPIC-Potsdam study. A similar trend was observed in the independent cohort (HRadditve = 0.60, 95% CI: 0.29 to 1.25). Conclusions Our study suggests an interaction between MTTP -164T > C functional polymorphism with total cholesterol levels. Thereby risk allele carriers with low cholesterol levels may be predisposed to an increased risk of developing CVD, which seems to be abolished among risk allele carriers with high cholesterol levels. PMID:23356586

Teaching heroics: Identity and ethical imagery in science education

NASA Astrophysics Data System (ADS)

Robeck, Edward C.

In what follows, I address ways in which science education can influence personal identity and social relationships. I do this through a consideration of ideological implications of science as it is constituted in science education. In this situation, I consider science to be a symbolic--emanating from socially derived meanings. I begin with the premise that any symbol system is permeated with ideological elements. To highlight the ideological elements of science in science education, I use another more explicitly symbolic system as a comparative framework. That system is epic heroism, primarily as Joseph Campbell (1949) describes it in The Hero With A Thousand Faces. The discussion of science education is given a practical grounding using transcripts from the interviews with twenty Grade 10 students and many of their teachers undertaken in the 1993-1994 school year. I used epic heroism as a framework for initiating interpretations of broad themes from the transcripts, but also read the transcripts in relation to aspects of epic heroism, including existing critiques of Campbell's work and heroism more broadly. Specific quotes are included to illustrations of various points. My particular focus here is on ideological elements that can be associated with racism, sexism, and other social relationships that are collectively referred to as relations involving divisive bias. In particular, two themes are discussed extensively. The first is the theme of identity formed through separation, which results in the promotion of reductive and individualistic identities. The second theme has to do with the role of boundary imagery in the formation of relationship, which establishes difference hierarchically. Both of these are pervasive in divisive bias and in the imagery of epic heroism. Ways in which they can pervade practices in science education are also discussed. The central argument of the thesis is that science education, when undertaken through practices that incorporate themes of separation and boundary imagery, perpetuates relations of divisive bias. To forestall this, I suggest that science education can be approached in ways that incorporate what is referred to as an ethic of plenishment, which strives to promote expansive identities through a proliferation of interpersonal associations.

Evaluation of a Modified Italian European Prospective Investigation into Cancer and Nutrition Food Frequency Questionnaire for Individuals with Celiac Disease.

PubMed

Mazzeo, Teresa; Roncoroni, Leda; Lombardo, Vincenza; Tomba, Carolina; Elli, Luca; Sieri, Sabina; Grioni, Sara; Bardella, Maria T; Agostoni, Carlo; Doneda, Luisa; Brighenti, Furio; Pellegrini, Nicoletta

2016-11-01

To date, it is unclear whether individuals with celiac disease following a gluten-free (GF) diet for several years have adequate intake of all recommended nutrients. Lack of a food frequency questionnaire (FFQ) for individuals with celiac disease could be partly responsible for this still-debated issue. The aim of the study is to evaluate the performance of a modified European Prospective Investigation into Cancer and Nutrition (EPIC) FFQ in estimating nutrient and food intake in a celiac population. In a cross-sectional study, the dietary habits of individuals with celiac disease were reported using a modified Italian EPIC FFQ and were compared to a 7-day weighed food record as a reference method. A total of 200 individuals with histologically confirmed celiac disease were enrolled in the study between October 2012 and August 2014 at the Center for Prevention and Diagnosis of Celiac Disease (Milan, Italy). Nutrient and food category intake were calculated by 7-day weighed food record using an Italian food database integrated with the nutrient composition of 60 GF foods and the modified EPIC FFQ, in which 24 foods were substituted with GF foods comparable for energy and carbohydrate content. An evaluation of the modified FFQ compared to 7-day weighed food record in assessing the reported intake of nutrient and food groups was conducted using Spearman's correlation coefficients and weighted κ. One hundred individuals completed the study. The Spearman's correlation coefficients of FFQ and 7-day weighed food record ranged from .13 to .73 for nutrients and from .23 to .75 for food groups. A moderate agreement, which was defined as a weighted κ value of .40 to .60, was obtained for 30% of the analyzed nutrients, and 40% of the nutrients showed values between .30 and .40. The weighted κ exceeded .40 for 60% of the 15 analyzed food groups. The modified EPIC FFQ demonstrated moderate congruence with a weighed food record in ranking individuals by dietary intakes, particularly food groups. Copyright © 2016 Academy of Nutrition and Dietetics. Published by Elsevier Inc. All rights reserved.

Limb Symmetry Indexes Can Overestimate Knee Function After Anterior Cruciate Ligament Injury.

PubMed

Wellsandt, Elizabeth; Failla, Mathew J; Snyder-Mackler, Lynn

2017-05-01

Study Design Prospective cohort. Background The high risk of second anterior cruciate ligament (ACL) injuries after return to sport highlights the importance of return-to-sport decision making. Objective return-to-sport criteria frequently use limb symmetry indexes (LSIs) to quantify quadriceps strength and hop scores. Whether using the uninvolved limb in LSIs is optimal is unknown. Objectives To evaluate the uninvolved limb as a reference standard for LSIs utilized in return-to-sport testing and its relationship with second ACL injury rates. Methods Seventy athletes completed quadriceps strength and 4 single-leg hop tests before anterior cruciate ligament reconstruction (ACLR) and 6 months after ACLR. Limb symmetry indexes for each test compared involved-limb measures at 6 months to uninvolved-limb measures at 6 months. Estimated preinjury capacity (EPIC) levels for each test compared involved-limb measures at 6 months to uninvolved-limb measures before ACLR. Second ACL injuries were tracked for a minimum follow-up of 2 years after ACLR. Results Forty (57.1%) patients achieved 90% LSIs for quadriceps strength and all hop tests. Only 20 (28.6%) patients met 90% EPIC levels (comparing the involved limb at 6 months after ACLR to the uninvolved limb before ACLR) for quadriceps strength and all hop tests. Twenty-four (34.3%) patients who achieved 90% LSIs for all measures 6 months after ACLR did not achieve 90% EPIC levels for all measures. Estimated preinjury capacity levels were more sensitive than LSIs in predicting second ACL injuries (LSIs, 0.273; 95% confidence interval [CI]: 0.010, 0.566 and EPIC, 0.818; 95% CI: 0.523, 0.949). Conclusion Limb symmetry indexes frequently overestimate knee function after ACLR and may be related to second ACL injury risk. These findings raise concern about whether the variable ACL return-to-sport criteria utilized in current clinical practice are stringent enough to achieve safe and successful return to sport. Level of Evidence Prognosis, 2b. J Orthop Sports Phys Ther 2017;47(5):334-338. Epub 29 Mar 2017. doi:10.2519/jospt.2017.7285.

DSCOVR_EPIC_L2_MAIAC_01

Atmospheric Science Data Center

2018-06-25

... several atmospheric quantities including cloud mask and aerosol optical depth (AOD) required for atmospheric correction. The parameters ... Project Title:  DSCOVR Discipline:  Aerosol Clouds Version:  V1 Level:  L2 ...

DSCOVR Public Release Statement V02

Atmospheric Science Data Center

2017-07-06

... where it performs its primary objective of monitoring the solar wind as well as observing the Earth from sunrise to sunset with two Earth Science sensors: the Earth Polychromatic Imaging Camera (EPIC) and ...

From the Cluster Temperature Function to the Mass Function at Low Z

NASA Technical Reports Server (NTRS)

Mushotzky, Richard (Technical Monitor); Markevitch, Maxim

2004-01-01

This XMM project consisted of three observations of the nearby, hot galaxy cluster Triangulum Australis, one of the cluster center and two offsets. The goal was to measure the radial gas temperature profile out to large radii and derive the total gravitating mass within the radius of average mass overdensity 500. The central pointing also provides data for a detailed two-dimensional gas temperature map of this interesting cluster. We have analyzed all three observations. The derivation of the temperature map using the central pointing is complete, and the paper is soon to be submitted. During the course of this study and of the analysis of archival XMM cluster observations, it became apparent that the commonly used XMM background flare screening techniques are often not accurate enough for studies of the cluster outer regions. The information on the cluster's total masses is contained at large off-center distances, and it is precisely the temperatures for those low-brightness regions that are most affected by the detector background anomalies. In particular, our two offset observations of the Triangulum have been contaminated by the background flares ("bad cosmic weather") to a degree where they could not be used for accurate spectral analysis. This forced us to expand the scope of our project. We needed to devise a more accurate method of screening and modeling the background flares, and to evaluate the uncertainty of the XMM background modeling. To do this, we have analyzed a large number of archival EPIC blank-field and closed-cover observations. As a result, we have derived stricter background screening criteria. It also turned out that mild flares affecting EPIC-pn can be modeled with an adequate accuracy. Such modeling has been used to derive our Triangulum temperature map. The results of our XMM background analysis, including the modeling recipes, are presented in a paper which is in final preparation and will be submitted soon. It will be useful not only for our future analysis but for other XMM cluster observations as well.

Reducing our environmental footprint and improving our health: greenhouse gas emission and land use of usual diet and mortality in EPIC-NL: a prospective cohort study

PubMed Central

2014-01-01

Background Food choices influence health status, but also have a great impact on the environment. The production of animal-derived foods has a high environmental burden, whereas the burden of refined carbohydrates, vegetables and fruit is low. The aim of this study was to investigate the associations of greenhouse gas emission (GHGE) and land use of usual diet with mortality risk, and to estimate the effect of a modelled meat substitution scenario on health and the environment. Methods The usual diet of 40011 subjects in the EPIC-NL cohort was assessed using a food frequency questionnaire. GHGE and land use of food products were based on life cycle analysis. Cox proportional hazard ratios (HR) were calculated to determine relative mortality risk. In the modelled meat-substitution scenario, one-third (35 gram) of the usual daily meat intake (105 gram) was substituted by other foods. Results During a follow-up of 15.9 years, 2563 deaths were registered. GHGE and land use of the usual diet were not associated with all-cause or with cause-specific mortality. Highest vs. lowest quartile of GHGE and land use adjusted hazard ratios for all-cause mortality were respectively 1.00 (95% CI: 0.86-1.17) and 1.05 (95% CI: 0.89-1.23). Modelled substitution of 35 g/d of meat with vegetables, fruit-nuts-seeds, pasta-rice-couscous, or fish significantly increased survival rates (6-19%), reduced GHGE (4-11%), and land use (10-12%). Conclusions There were no significant associations observed between dietary-derived GHGE and land use and mortality in this Dutch cohort. However, the scenario-study showed that substitution of meat with other major food groups was associated with a lower mortality risk and a reduced environmental burden. Especially when vegetables, fruit-nuts-seeds, fish, or pasta-rice-couscous replaced meat. PMID:24708803

Reducing our environmental footprint and improving our health: greenhouse gas emission and land use of usual diet and mortality in EPIC-NL: a prospective cohort study.

PubMed

Biesbroek, Sander; Bueno-de-Mesquita, H Bas; Peeters, Petra H M; Verschuren, Wm Monique; van der Schouw, Yvonne T; Kramer, Gerard F H; Tyszler, Marcelo; Temme, Elisabeth H M

2014-04-07

Food choices influence health status, but also have a great impact on the environment. The production of animal-derived foods has a high environmental burden, whereas the burden of refined carbohydrates, vegetables and fruit is low. The aim of this study was to investigate the associations of greenhouse gas emission (GHGE) and land use of usual diet with mortality risk, and to estimate the effect of a modelled meat substitution scenario on health and the environment. The usual diet of 40011 subjects in the EPIC-NL cohort was assessed using a food frequency questionnaire. GHGE and land use of food products were based on life cycle analysis. Cox proportional hazard ratios (HR) were calculated to determine relative mortality risk. In the modelled meat-substitution scenario, one-third (35 gram) of the usual daily meat intake (105 gram) was substituted by other foods. During a follow-up of 15.9 years, 2563 deaths were registered. GHGE and land use of the usual diet were not associated with all-cause or with cause-specific mortality. Highest vs. lowest quartile of GHGE and land use adjusted hazard ratios for all-cause mortality were respectively 1.00 (95% CI: 0.86-1.17) and 1.05 (95% CI: 0.89-1.23). Modelled substitution of 35 g/d of meat with vegetables, fruit-nuts-seeds, pasta-rice-couscous, or fish significantly increased survival rates (6-19%), reduced GHGE (4-11%), and land use (10-12%). There were no significant associations observed between dietary-derived GHGE and land use and mortality in this Dutch cohort. However, the scenario-study showed that substitution of meat with other major food groups was associated with a lower mortality risk and a reduced environmental burden. Especially when vegetables, fruit-nuts-seeds, fish, or pasta-rice-couscous replaced meat.

StarryTelling: Discover the Galileo in You!

NASA Astrophysics Data System (ADS)

Wallace, E. F.

2010-08-01

Astronomy facts are innumerable. However, astronomy stories are epic. Interweave ancient sky lore with personal tales and modern science and make the skies come alive using the oral tradition. We call it StarryTelling™.

Employee Call Center, EPIC, Division of Personnel and Labor Relations,

Science.gov Websites

Family/Medical Leave information Rehire/transfer rights Worker's Compensation Payroll Information Range Holidays General family/medical leave information Leave without pay Military Leave AMHS Vessel employees

Cosmic Epic Unfolds in Infrared

NASA Image and Video Library

2007-01-09

This majestic view taken by NASA Spitzer Space Telescope tells an untold story of life and death in the Eagle nebula, an industrious star-making factory located 7,000 light-years away in the Serpens constellation.

Pelvic and lower extremity injuries in Homer's Iliad: a review of the literature.

PubMed

Galanakos, Spyridon P; Bot, Arjan G J; Macheras, George A

2015-01-01

The Iliad, composed approximately in the middle of the eighth century bc, constitutes the leading and oldest known example of heroic epic. The Homeric epic presents the conflicts that took place during the last year of the 10-year lasting Trojan War, offering a realistic description of battle wounds. We studied the text of The Iliad in ancient Greek and in the translations in modern Greek and English and searched for all recorded injuries to the pelvis and lower extremities. A total of 16 traumatic injuries of pelvis and lower extremities were described, including 7 fatal wounds, while in 9 cases, the outcome was unknown.The Iliad remains the oldest record of Greek medicine and a unique source of surgical history. To study the vividly reported events is a great experience, particularly for a surgeon.

Determining the upper limit on the black hole mass from NGC 4748 X-ray photometry

NASA Astrophysics Data System (ADS)

Fedorova, E.

2017-12-01

In this paper, we analyze all the available X-ray photometrical data of the narrow-line Seyfert 1 galaxy NGC 4748, namely XMM-Newton (EPIC and OM), INTEGRAL (ISGRI and JEM-X) as well as SWIFT (BAT and XRT) to estimate, if it's possible, the mass of the central black hole from the variability of the lightcurves. In the XMM/EPIC composite lightcurve, we found fast quasiperiodic variations of the 0.5-10.0 keV flux on a timescales of 103 seconds. These variations were interpreted as the result of the emission of a dense hot clump of matter orbiting the central black hole near the innermost stable trajectory. The structure function analysis of this lightcurve allowed us to put an upper limit to the mass of the central BH, as 6.23 * 107Ms.

The peculiar dipping events in the disc-bearing young-stellar object EPIC 204278916

NASA Astrophysics Data System (ADS)

Scaringi, S.; Manara, C. F.; Barenfeld, S. A.; Groot, P. J.; Isella, A.; Kenworthy, M. A.; Knigge, C.; Maccarone, T. J.; Ricci, L.; Ansdell, M.

2016-12-01

EPIC 204278916 has been serendipitously discovered from its K2 light curve that displays irregular dimmings of up to 65 per cent for ≈25 consecutive days out of 78.8 d of observations. For the remaining duration of the observations, the variability is highly periodic and attributed to stellar rotation. The star is a young, low-mass (M-type) pre-main-sequence star with clear evidence of a resolved tilted disc from Atacama Large Millimeter/submillimeter Array (ALMA) observations. We examine the K2 light curve in detail and hypothesize that the irregular dimmings are caused by either a warped inner disc edge or transiting cometary-like objects in either circular or eccentric orbits. The explanations discussed here are particularly relevant for other recently discovered young objects with similar absorption dips.

JBluIce–EPICS control system for macromolecular crystallography

PubMed Central

Stepanov, Sergey; Makarov, Oleg; Hilgart, Mark; Pothineni, Sudhir Babu; Urakhchin, Alex; Devarapalli, Satish; Yoder, Derek; Becker, Michael; Ogata, Craig; Sanishvili, Ruslan; Venugopalan, Nagarajan; Smith, Janet L.; Fischetti, Robert F.

2011-01-01

The trio of macromolecular crystallography beamlines constructed by the General Medicine and Cancer Institutes Collaborative Access Team (GM/CA-CAT) in Sector 23 of the Advanced Photon Source (APS) have been in growing demand owing to their outstanding beam quality and capacity to measure data from crystals of only a few micrometres in size. To take full advantage of the state-of-the-art mechanical and optical design of these beamlines, a significant effort has been devoted to designing fast, convenient, intuitive and robust beamline controls that could easily accommodate new beamline developments. The GM/CA-CAT beamline controls are based on the power of EPICS for distributed hardware control, the rich Java graphical user interface of Eclipse RCP and the task-oriented philosophy as well as the look and feel of the successful SSRL BluIce graphical user interface for crystallography. These beamline controls feature a minimum number of software layers, the wide use of plug-ins that can be written in any language and unified motion controls that allow on-the-fly scanning and optimization of any beamline com­ponent. This paper describes the ways in which BluIce was combined with EPICS and converted into the Java-based JBluIce, discusses the solutions aimed at streamlining and speeding up operations and gives an overview of the tools that are provided by this new open-source control system for facilitating crystallo­graphic experiments, especially in the field of microcrystallo­graphy. PMID:21358048

Jllumina - A comprehensive Java-based API for statistical Illumina Infinium HumanMethylation450 and Infinium MethylationEPIC BeadChip data processing.

PubMed

Almeida, Diogo; Skov, Ida; Lund, Jesper; Mohammadnejad, Afsaneh; Silva, Artur; Vandin, Fabio; Tan, Qihua; Baumbach, Jan; Röttger, Richard

2016-10-01

Measuring differential methylation of the DNA is the nowadays most common approach to linking epigenetic modifications to diseases (called epigenome-wide association studies, EWAS). For its low cost, its efficiency and easy handling, the Illumina HumanMethylation450 BeadChip and its successor, the Infinium MethylationEPIC BeadChip, is the by far most popular techniques for conduction EWAS in large patient cohorts. Despite the popularity of this chip technology, raw data processing and statistical analysis of the array data remains far from trivial and still lacks dedicated software libraries enabling high quality and statistically sound downstream analyses. As of yet, only R-based solutions are freely available for low-level processing of the Illumina chip data. However, the lack of alternative libraries poses a hurdle for the development of new bioinformatic tools, in particular when it comes to web services or applications where run time and memory consumption matter, or EWAS data analysis is an integrative part of a bigger framework or data analysis pipeline. We have therefore developed and implemented Jllumina, an open-source Java library for raw data manipulation of Illumina Infinium HumanMethylation450 and Infinium MethylationEPIC BeadChip data, supporting the developer with Java functions covering reading and preprocessing the raw data, down to statistical assessment, permutation tests, and identification of differentially methylated loci. Jllumina is fully parallelizable and publicly available at http://dimmer.compbio.sdu.dk/download.html.

Jllumina - A comprehensive Java-based API for statistical Illumina Infinium HumanMethylation450 and MethylationEPIC data processing.

PubMed

Almeida, Diogo; Skov, Ida; Lund, Jesper; Mohammadnejad, Afsaneh; Silva, Artur; Vandin, Fabio; Tan, Qihua; Baumbach, Jan; Röttger, Richard

2016-12-18

Measuring differential methylation of the DNA is the nowadays most common approach to linking epigenetic modifications to diseases (called epigenome-wide association studies, EWAS). For its low cost, its efficiency and easy handling, the Illumina HumanMethylation450 BeadChip and its successor, the Infinium MethylationEPIC BeadChip, is the by far most popular techniques for conduction EWAS in large patient cohorts. Despite the popularity of this chip technology, raw data processing and statistical analysis of the array data remains far from trivial and still lacks dedicated software libraries enabling high quality and statistically sound downstream analyses. As of yet, only R-based solutions are freely available for low-level processing of the Illumina chip data. However, the lack of alternative libraries poses a hurdle for the development of new bioinformatic tools, in particular when it comes to web services or applications where run time and memory consumption matter, or EWAS data analysis is an integrative part of a bigger framework or data analysis pipeline. We have therefore developed and implemented Jllumina, an open-source Java library for raw data manipulation of Illumina Infinium HumanMethylation450 and Infinium MethylationEPIC BeadChip data, supporting the developer with Java functions covering reading and preprocessing the raw data, down to statistical assessment, permutation tests, and identification of differentially methylated loci. Jllumina is fully parallelizable and publicly available at http://dimmer.compbio.sdu.dk/download.html.

Fruit, vegetable, and fiber intake in relation to cancer risk: findings from the European Prospective Investigation into Cancer and Nutrition (EPIC).

PubMed

Bradbury, Kathryn E; Appleby, Paul N; Key, Timothy J

2014-07-01

Fruit, vegetables, and certain components of plant foods, such as fiber, have long been thought to protect against cancer. The European Prospective Investigation into Cancer and Nutrition (EPIC) is a prospective cohort that includes >500,000 participants from 10 European countries and has made a substantial contribution to knowledge in this research area. The purpose of this article is to summarize the findings published thus far from the EPIC study on the associations between fruit, vegetable, or fiber consumption and the risk of cancer at 14 different sites. The risk of cancers of the upper gastrointestinal tract was inversely associated with fruit intake but was not associated with vegetable intake. The risk of colorectal cancer was inversely associated with intakes of total fruit and vegetables and total fiber, and the risk of liver cancer was also inversely associated with the intake of total fiber. The risk of cancer of the lung was inversely associated with fruit intake but was not associated with vegetable intake; this association with fruit intake was restricted to smokers and might be influenced by residual confounding due to smoking. There was a borderline inverse association of fiber intake with breast cancer risk. For the other 9 cancer sites studied (stomach, biliary tract, pancreas, cervix, endometrium, prostate, kidney, bladder, and lymphoma) there were no reported significant associations of risk with intakes of total fruit, vegetables, or fiber. © 2014 American Society for Nutrition.

Label-free optical biosensor for real-time monitoring the cytotoxicity of xenobiotics: A proof of principle study on glyphosate.

PubMed

Farkas, Eniko; Szekacs, Andras; Kovacs, Boglarka; Olah, Marianna; Horvath, Robert; Szekacs, Inna

2018-06-05

Rapid and inexpensive biosensor technologies allowing real-time analysis of biomolecular and cellular events have become the basis of next-generation cell-based screening techniques. Our work opens up novel opportunities in the application of the high-throughput label-free Epic BenchTop optical biosensor in cell toxicity studies. The Epic technology records integrated cellular responses about changes in cell morphology and dynamic mass redistribution of cellular contents at the 100-150 nm layer above the sensor surface. The aim of the present study was to apply this novel technology to identify the effect of the herbicide Roundup Classic, its co-formulant polyethoxylated tallow amine (POEA), and its active ingredient glyphosate, on MC3T3-E1 cells adhered on the biosensor surface. The half maximal inhibitory concentrations of Roundup Classic, POEA and glyphosate upon 1 h of exposure were found to be 0.024%, 0.021% and 0.163% in serum-containing medium and 0.028%, 0.019% and 0.538% in serum-free conditions, respectively (at concentrations equivalent to the diluted Roundup solution). These results showed a good correlation with parallel end-point assays, demonstrating the outstanding utility of the Epic technique in cytotoxicity screening, allowing not only high-throughput, real-time detection, but also reduced assay run time and cytotoxicity assessment at end-points far before cell death would occur. Copyright © 2018 Elsevier B.V. All rights reserved.

Opening the Duke electronic health record to apps: Implementing SMART on FHIR.

PubMed

Bloomfield, Richard A; Polo-Wood, Felipe; Mandel, Joshua C; Mandl, Kenneth D

2017-03-01

Recognizing a need for our EHR to be highly interoperable, our team at Duke Health enabled our Epic-based electronic health record to be compatible with the Boston Children's project called Substitutable Medical Apps and Reusable Technologies (SMART), which employed Health Level Seven International's (HL7) Fast Healthcare Interoperability Resources (FHIR), commonly known as SMART on FHIR. We created a custom SMART on FHIR-compatible server infrastructure written in Node.js that served two primary functions. First, it handled API management activities such rate-limiting, authorization, auditing, logging, and analytics. Second, it retrieved the EHR data and made it available in a FHIR-compatible format. Finally, we made required changes to the EHR user interface to allow us to integrate several compatible apps into the provider- and patient-facing EHR workflows. After integrating SMART on FHIR into our Epic-based EHR, we demonstrated several types of apps running on the infrastructure. This included both provider- and patient-facing apps as well as apps that are closed source, open source and internally-developed. We integrated the apps into the testing environment of our desktop EHR as well as our patient portal. We also demonstrated the integration of a native iOS app. In this paper, we demonstrate the successful implementation of the SMART and FHIR technologies on our Epic-based EHR and subsequent integration of several compatible provider- and patient-facing apps. Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.

Simulated effects of crop rotations and residue management on wind erosion in Wuchuan, west-central Inner Mongolia, China.

PubMed

Wang, Erda; Harman, Wyatte L; Williams, Jimmy R; Xu, Cheng

2002-01-01

For decades, wind erosion has triggered dust and sand storms, buffeting Beijing and areas of northwestern China to the point of being hazardous to human health while rapidly eroding crop and livestock productivity. The EPIC (Environmental Policy Integrated Climate) field-scale simulation model was used to assess long-term effects of improved crop rotations and crop residue management practices on wind erosion in Wuchuan County in Inner Mongolia. Simulation results indicate that preserving crop stalks until land is prepared by zone tillage for the next year's crop in lieu of using them as a source of heating fuel or livestock fodder significantly reduces wind erosion by 60%. At the same time, grain and potato (Solanum tuberosum L.) yields were maintained or improved. Significant reductions in erosion, 35 to 46%, also resulted from delaying stalk removal until late January through late April. Yearly wind erosion was concentrated in April and May, the windiest months. Additionally, the use of alternative crop rotations resulted in differences in wind erosion, largely due to a difference in residue stature and quality and differences in biomass produced. As a result, altering current crop rotation systems by expanding corn (Zea mays L.), wheat (Triticum aestivum L.), and millet [Sorghum bicolor (L.) Moench] and reducing potato and pea (Pisum sativum L.) production significantly reduced simulated wind erosion, thus diminishing the severity of dust and sand storms in northwestern China. Saving and protecting topsoil over time will sustain land productivity and have long-term implications for improving conditions of rural poverty in the region.

Henry B. Stallard, MD: The 1924 Paris Olympics, and Chariots of Fire.

PubMed

Bullock, John D

2011-01-01

Hyla Bristow Stallard was one of the greatest middle-distance runners in British athletic history. While an English medical student, he won the bronze medal in the 1500-meter run at the 1924 Paris Olympics, immortalized in the critically acclaimed 1981 epic British film, Chariots of Fire. He later became one of the most famous ophthalmologists in the world for his pioneering work in radiation therapy of malignant eye disease. He was an inspiring role model for both athletes and physicians. As a gifted individual who enjoyed two international careers, he is worthy of great admiration and emulation. Copyright © 2011 Elsevier Inc. All rights reserved.

Suppressing breakers with polar oil films: Using an epic sea rescue to model wave energy budgets

NASA Astrophysics Data System (ADS)

Cox, Charles S.; Zhang, Xin; Duda, Timothy F.

2017-02-01

Oil has been used to still stormy seas for centuries, but the mechanisms are poorly understood. Here we examine the processes by using quantitative information from a remarkable 1883 sea rescue where oil was used to reduce large breakers during a storm. Modeling of the oil film's extent and waves under the film suggests that large breakers were suppressed by a reduction of wind energy input. Modification of surface roughness by the film is hypothesized to alter the wind profile above the sea and the energy flow. The results are central to understanding air-sea momentum exchange, including its role in such processes as cyclone growth and storm surge, although they address only one aspect of the complex problem of wind interaction with the ocean surface.

Coffee and tea consumption and the risk of ovarian cancer: a prospective cohort study and updated meta-analysis.

PubMed

Braem, Marieke G M; Onland-Moret, N Charlotte; Schouten, Leo J; Tjønneland, Anne; Hansen, Louise; Dahm, Christina C; Overvad, Kim; Lukanova, Annekatrin; Dossus, Laure; Floegel, Anna; Boeing, Heiner; Clavel-Chapelon, Francoise; Chabbert-Buffet, Nathalie; Fagherazzi, Guy; Trichopoulou, Antonia; Benetou, Vassiliki; Goufa, Ioulia; Pala, Valeria; Galasso, Rocco; Mattiello, Amalia; Sacerdote, Carlotta; Palli, Domenico; Tumino, Rosario; Gram, Inger T; Lund, Eiliv; Gavrilyuk, Oxana; Sánchez, Maria-José; Quirós, Ramón; Gonzales, Carlos A; Dorronsoro, Miren; Castaño, José M Huerta; Gurrea, Aurelio Barricarte; Idahl, Annika; Ohlson, Nina; Lundin, Eva; Jirstrom, Karin; Wirfalt, Elisabet; Allen, Naomi E; Tsilidis, Konstantinos K; Kaw, Kay-Tee; Bueno-de-Mesquita, H Bas; Dik, Vincent K; Rinaldi, Sabina; Fedirko, Veronika; Norat, Teresa; Riboli, Elio; Kaaks, Rudolf; Peeters, Petra H M

2012-05-01

In 2007 the World Cancer Research Fund Report concluded that there was limited and inconsistent evidence for an effect of coffee and tea consumption on the risk of epithelial ovarian cancer (EOC). In the European Prospective Investigation into Cancer and Nutrition (EPIC), we aimed to investigate whether coffee intakes, tea intakes, or both are associated with the risk of EOC. All women participating in the EPIC (n = 330,849) were included in this study. Data on coffee and tea consumption were collected through validated food-frequency questionnaires at baseline. HRs and 95% CIs were estimated by using Cox proportional hazards models. Furthermore, we performed an updated meta-analysis of all previous prospective studies until April 2011 by comparing the highest and lowest coffee- and tea-consumption categories as well as by using dose-response random-effects meta-regression analyses. During a median follow-up of 11.7 y, 1244 women developed EOC. No association was observed between the risk of EOC and coffee consumption [HR: 1.05 (95% CI: 0.75, 1.46) for the top quintile compared with no intake] or tea consumption [HR: 1.07 (95% CI: 0.78, 1.45) for the top quintile compared with no intake]. This lack of association between coffee and tea intake and EOC risk was confirmed by the results of our meta-analysis. Epidemiologic studies do not provide sufficient evidence to support an association between coffee and tea consumption and risk of ovarian cancer.

Development of a State Machine Sequencer for the Keck Interferometer: Evolution, Development and Lessons Learned using a CASE Tool Approach

NASA Technical Reports Server (NTRS)

Rede, Leonard J.; Booth, Andrew; Hsieh, Jonathon; Summer, Kellee

2004-01-01

This paper presents a discussion of the evolution of a sequencer from a simple EPICS (Experimental Physics and Industrial Control System) based sequencer into a complex implementation designed utilizing UML (Unified Modeling Language) methodologies and a CASE (Computer Aided Software Engineering) tool approach. The main purpose of the sequencer (called the IF Sequencer) is to provide overall control of the Keck Interferometer to enable science operations be carried out by a single operator (and/or observer). The interferometer links the two 10m telescopes of the W. M. Keck Observatory at Mauna Kea, Hawaii. The IF Sequencer is a high-level, multi-threaded, Hare1 finite state machine, software program designed to orchestrate several lower-level hardware and software hard real time subsystems that must perform their work in a specific and sequential order. The sequencing need not be done in hard real-time. Each state machine thread commands either a high-speed real-time multiple mode embedded controller via CORB A, or slower controllers via EPICS Channel Access interfaces. The overall operation of the system is simplified by the automation. The UML is discussed and our use of it to implement the sequencer is presented. The decision to use the Rhapsody product as our CASE tool is explained and reflected upon. Most importantly, a section on lessons learned is presented and the difficulty of integrating CASE tool automatically generated C++ code into a large control system consisting of multiple infrastructures is presented.

Dietary flavonoid intake and colorectal cancer risk in the European prospective investigation into cancer and nutrition (EPIC) cohort.

PubMed

Zamora-Ros, Raul; Barupal, Dinesh K; Rothwell, Joseph A; Jenab, Mazda; Fedirko, Veronika; Romieu, Isabelle; Aleksandrova, Krasimira; Overvad, Kim; Kyrø, Cecilie; Tjønneland, Anne; Affret, Aurélie; His, Mathilde; Boutron-Ruault, Marie-Christine; Katzke, Verena; Kühn, Tilman; Boeing, Heiner; Trichopoulou, Antonia; Naska, Androniki; Kritikou, Maria; Saieva, Calogero; Agnoli, Claudia; Santucci de Magistris, Maria; Tumino, Rosario; Fasanelli, Francesca; Weiderpass, Elisabete; Skeie, Guri; Merino, Susana; Jakszyn, Paula; Sánchez, Maria-José; Dorronsoro, Miren; Navarro, Carmen; Ardanaz, Eva; Sonestedt, Emily; Ericson, Ulrika; Maria Nilsson, Lena; Bodén, Stina; Bueno-de-Mesquita, H B As; Peeters, Petra H; Perez-Cornago, Aurora; Wareham, Nicholas J; Khaw, Kay-Thee; Freisling, Heinz; Cross, Amanda J; Riboli, Elio; Scalbert, Augustin

2017-04-15

Flavonoids have been shown to inhibit colon cancer cell proliferation in vitro and protect against colorectal carcinogenesis in animal models. However, epidemiological evidence on the potential role of flavonoid intake in colorectal cancer (CRC) development remains sparse and inconsistent. We evaluated the association between dietary intakes of total flavonoids and their subclasses and risk of development of CRC, within the European Prospective Investigation into Cancer and Nutrition (EPIC) study. A cohort of 477,312 adult men and women were recruited in 10 European countries. At baseline, dietary intakes of total flavonoids and individual subclasses were estimated using centre-specific validated dietary questionnaires and composition data from the Phenol-Explorer database. During an average of 11 years of follow-up, 4,517 new cases of primary CRC were identified, of which 2,869 were colon (proximal = 1,298 and distal = 1,266) and 1,648 rectal tumours. No association was found between total flavonoid intake and the risk of overall CRC (HR for comparison of extreme quintiles 1.05, 95% CI 0.93-1.18; p-trend = 0.58) or any CRC subtype. No association was also observed with any intake of individual flavonoid subclasses. Similar results were observed for flavonoid intake expressed as glycosides or aglycone equivalents. Intake of total flavonoids and flavonoid subclasses, as estimated from dietary questionnaires, did not show any association with risk of CRC development. © 2016 UIC.

Development of a state machine sequencer for the Keck Interferometer: evolution, development, and lessons learned using a CASE tool approach

NASA Astrophysics Data System (ADS)

Reder, Leonard J.; Booth, Andrew; Hsieh, Jonathan; Summers, Kellee R.

2004-09-01

This paper presents a discussion of the evolution of a sequencer from a simple Experimental Physics and Industrial Control System (EPICS) based sequencer into a complex implementation designed utilizing UML (Unified Modeling Language) methodologies and a Computer Aided Software Engineering (CASE) tool approach. The main purpose of the Interferometer Sequencer (called the IF Sequencer) is to provide overall control of the Keck Interferometer to enable science operations to be carried out by a single operator (and/or observer). The interferometer links the two 10m telescopes of the W. M. Keck Observatory at Mauna Kea, Hawaii. The IF Sequencer is a high-level, multi-threaded, Harel finite state machine software program designed to orchestrate several lower-level hardware and software hard real-time subsystems that must perform their work in a specific and sequential order. The sequencing need not be done in hard real-time. Each state machine thread commands either a high-speed real-time multiple mode embedded controller via CORBA, or slower controllers via EPICS Channel Access interfaces. The overall operation of the system is simplified by the automation. The UML is discussed and our use of it to implement the sequencer is presented. The decision to use the Rhapsody product as our CASE tool is explained and reflected upon. Most importantly, a section on lessons learned is presented and the difficulty of integrating CASE tool automatically generated C++ code into a large control system consisting of multiple infrastructures is presented.

Weather, day length and physical activity in older adults: Cross-sectional results from the European Prospective Investigation into Cancer and Nutrition (EPIC) Norfolk Cohort

PubMed Central

Wu, Yu-Tzu; Luben, Robert; Wareham, Nicholas; Griffin, Simon; Jones, Andy P.

2017-01-01

Background A wide range of environmental factors have been related to active ageing, but few studies have explored the impact of weather and day length on physical activity in older adults. We investigate the cross-sectional association between weather conditions, day length and activity in older adults using a population-based cohort in England, the European Prospective Investigation into Cancer and Nutrition (EPIC) Norfolk study. Methods Physical activity was measured objectively over 7 days using an accelerometer and this was used to calculate daily total physical activity (counts per minute), daily minutes of sedentary behaviour and light, moderate and vigorous physical activity (LMVPA). Day length and two types of weather conditions, precipitation and temperature, were obtained from a local weather station. The association between these variables and physical activity was examined by multilevel first-order autoregressive modelling. Results After adjusting for individual factors, short day length and poor weather conditions, including high precipitation and low temperatures, were associated with up to 10% lower average physical activity (p<0.01) and 8 minutes less time spent in LMVPA but 15 minutes more sedentary time, compared to the best conditions. Conclusion Day length and weather conditions appear to be an important factor related to active ageing. Future work should focus on developing potential interventions to reduce their impact on physical activity behaviours in older adults. PMID:28562613

Two white dwarfs in ultrashort binaries with detached, eclipsing, likely sub-stellar companions detected by K2

NASA Astrophysics Data System (ADS)

Parsons, S. G.; Hermes, J. J.; Marsh, T. R.; Gänsicke, B. T.; Tremblay, P.-E.; Littlefair, S. P.; Sahman, D. I.; Ashley, R. P.; Green, M.; Rattanasoon, S.; Dhillon, V. S.; Burleigh, M. R.; Casewell, S. L.; Buckley, D. A. H.; Braker, I. P.; Irawati, P.; Dennihy, E.; Rodríguez-Gil, P.; Winget, D. E.; Winget, K. I.; Bell, Keaton J.; Kilic, Mukremin

2017-10-01

Using data from the extended Kepler mission in K2 Campaign 10, we identify two eclipsing binaries containing white dwarfs with cool companions that have extremely short orbital periods of only 71.2 min (SDSS J1205-0242, a.k.a. EPIC 201283111) and 72.5 min (SDSS J1231+0041, a.k.a. EPIC 248368963). Despite their short periods, both systems are detached with small, low-mass companions, in one case a brown dwarf and in the other case either a brown dwarf or a low-mass star. We present follow-up photometry and spectroscopy of both binaries, as well as phase-resolved spectroscopy of the brighter system, and use these data to place preliminary estimates on the physical and binary parameters. SDSS J1205-0242 is composed of a 0.39 ± 0.02 M⊙ helium-core white dwarf that is totally eclipsed by a 0.049 ± 0.006 M⊙ (51 ± 6MJ) brown-dwarf companion, while SDSS J1231+0041 is composed of a 0.56 ± 0.07 M⊙ white dwarf that is partially eclipsed by a companion of mass ≲0.095 M⊙. In the case of SDSS J1205-0242, we look at the combined constraints from common-envelope evolution and brown-dwarf models; the system is compatible with similar constraints from other post-common-envelope binaries, given the current parameter uncertainties, but has potential for future refinement.

ENVIRONMENTAL PHOTOGRAPHIC INTERPRETATION CENTER (EPIC)

EPA Science Inventory

The Environmental Sciences Division (ESD) in the National Exposure Research Laboratory (NERL) of the Office of Research and Development provides remote sensing technical support including aerial photograph acquisition and interpretation to the EPA Program Offices, ORD Laboratorie...

ScienceCasts: Cassini's Grand Finale

NASA Image and Video Library

2017-08-15

Cassini is in the process of executing 22 daring ‘Grand Finale’ dives in the 1,200-mile gap between Saturn and its innermost ring, concluding with an epic final plunge into the gas giant’s upper atmosphere.

Coffee Drinking and Mortality in 10 European Countries: A Multinational Cohort Study.

PubMed

Gunter, Marc J; Murphy, Neil; Cross, Amanda J; Dossus, Laure; Dartois, Laureen; Fagherazzi, Guy; Kaaks, Rudolf; Kühn, Tilman; Boeing, Heiner; Aleksandrova, Krasimira; Tjønneland, Anne; Olsen, Anja; Overvad, Kim; Larsen, Sofus Christian; Redondo Cornejo, Maria Luisa; Agudo, Antonio; Sánchez Pérez, María José; Altzibar, Jone M; Navarro, Carmen; Ardanaz, Eva; Khaw, Kay-Tee; Butterworth, Adam; Bradbury, Kathryn E; Trichopoulou, Antonia; Lagiou, Pagona; Trichopoulos, Dimitrios; Palli, Domenico; Grioni, Sara; Vineis, Paolo; Panico, Salvatore; Tumino, Rosario; Bueno-de-Mesquita, Bas; Siersema, Peter; Leenders, Max; Beulens, Joline W J; Uiterwaal, Cuno U; Wallström, Peter; Nilsson, Lena Maria; Landberg, Rikard; Weiderpass, Elisabete; Skeie, Guri; Braaten, Tonje; Brennan, Paul; Licaj, Idlir; Muller, David C; Sinha, Rashmi; Wareham, Nick; Riboli, Elio

2017-08-15

The relationship between coffee consumption and mortality in diverse European populations with variable coffee preparation methods is unclear. To examine whether coffee consumption is associated with all-cause and cause-specific mortality. Prospective cohort study. 10 European countries. 521 330 persons enrolled in EPIC (European Prospective Investigation into Cancer and Nutrition). Hazard ratios (HRs) and 95% CIs estimated using multivariable Cox proportional hazards models. The association of coffee consumption with serum biomarkers of liver function, inflammation, and metabolic health was evaluated in the EPIC Biomarkers subcohort (n = 14 800). During a mean follow-up of 16.4 years, 41 693 deaths occurred. Compared with nonconsumers, participants in the highest quartile of coffee consumption had statistically significantly lower all-cause mortality (men: HR, 0.88 [95% CI, 0.82 to 0.95]; P for trend < 0.001; women: HR, 0.93 [CI, 0.87 to 0.98]; P for trend = 0.009). Inverse associations were also observed for digestive disease mortality for men (HR, 0.41 [CI, 0.32 to 0.54]; P for trend < 0.001) and women (HR, 0.60 [CI, 0.46 to 0.78]; P for trend < 0.001). Among women, there was a statistically significant inverse association of coffee drinking with circulatory disease mortality (HR, 0.78 [CI, 0.68 to 0.90]; P for trend < 0.001) and cerebrovascular disease mortality (HR, 0.70 [CI, 0.55 to 0.90]; P for trend = 0.002) and a positive association with ovarian cancer mortality (HR, 1.31 [CI, 1.07 to 1.61]; P for trend = 0.015). In the EPIC Biomarkers subcohort, higher coffee consumption was associated with lower serum alkaline phosphatase; alanine aminotransferase; aspartate aminotransferase; γ-glutamyltransferase; and, in women, C-reactive protein, lipoprotein(a), and glycated hemoglobin levels. Reverse causality may have biased the findings; however, results did not differ after exclusion of participants who died within 8 years of baseline. Coffee-drinking habits were assessed only once. Coffee drinking was associated with reduced risk for death from various causes. This relationship did not vary by country. European Commission Directorate-General for Health and Consumers and International Agency for Research on Cancer.

Association between serotonin 5-HT-2C receptor gene (HTR2C) polymorphisms and obesity- and mental health-related phenotypes in a large population-based cohort.

PubMed

Vimaleswaran, K S; Zhao, J H; Wainwright, N W; Surtees, P G; Wareham, N J; Loos, R J F

2010-06-01

Studies have shown that common single-nucleotide polymorphisms (SNPs) in the serotonin 5-HT-2C receptor (HTR2C) are associated with antipsychotic agent-induced weight gain and the development of behavioural and psychological symptoms. We aimed to analyse whether variation in the HTR2C is associated with obesity- and mental health-related phenotypes in a large population-based cohort. Six tagSNPs, which capture all common genetic variation in the HTR2C gene, were genotyped in 4978 men and women from the European Prospective Investigation into Cancer (EPIC)-Norfolk study, an ongoing prospective population-based cohort study in the United Kingdom. To confirm borderline significant associations, the -759C/T SNP (rs3813929) was genotyped in the remaining 16 003 individuals from the EPIC-Norfolk study. We assessed social and psychological circumstances using the Health and Life Experiences Questionnaire. Genmod models were used to test associations between the SNPs and the outcomes. Logistic regression was performed to test for association of SNPs with obesity- and mental health- related phenotypes. Of the six HTR2C SNPs, only the T allele of the -759C/T SNP showed borderline significant associations with higher body mass index (BMI) (0.23 kg m(-2); (95% confidence interval (CI): 0.01-0.44); P=0.051) and increased risk of lifetime major depressive disorder (MDD) (Odds ratio (OR): 1.13 (95% CI: 1.01-1.22), P=0.02). The associations between the -759C/T and BMI and lifetime MDD were independent. As associations only achieved borderline significance, we aimed to validate our findings on the -759C/T SNP in the full EPIC-Norfolk cohort (n=20 981). Although the association with BMI remained borderline significant (beta=0.20 kg m(-2); 95% CI: 0.04-0.44, P=0.09), that with lifetime MDD (OR: 1.01; 95% CI: 0.94-1.09, P=0.73) was not replicated. Our findings suggest that common HTR2C gene variants are unlikely to have a major role in obesity- and mental health-related traits in the general population.

Irregular Variability In Kepler Photometry

NASA Astrophysics Data System (ADS)

Schlecker, Martin

2016-12-01

The transit method is the most successful tool for exoplanet discovery to date. With more than half of all known exoplanets discovered by Kepler using this method, the mission also revealed a number of objects with dimming events that defy the common explanations, the most prominent being KIC 8462852 aka ``Tabby's star''. I embarked on a search for objects with such irregular transit signatures in the data of K2, the two-wheeled successor mission of Kepler. My method is a combination of automated pre-selection of targets showing downward flux excursions and visual light curve inspection of the selected subset comprising about SI{1.5}% of the initial sample. In addition, I developed a tool to constrain the effective temperature of a planet-hosting star from photometry alone. This software finds broad application in any science case where a photometric spectral type estimate is necessary. I used existing transit models and Bayesian inference to perform a Markov Chain Monte Carlo (MCMC) analysis of a planetary candidate I discovered. This putative gas giant is in a SI{1.32}day circular orbit with an exceptionally tight orbital radius of a ≈ 0.012 AU. My analysis revealed a scaled planetary radius of R_{p}/R_star = 0.0927±0.0026 and an edge-on orientation with an inclination i=89.8+3.0-3.4. EPIC 217393088.01 is one of the closest-orbiting exoplanets ever detected and the first giant planet with such a small orbital radius. An additional major finding of my search is EPIC 220262993, which exhibits aperiodic, asymmetric dips in flux with rapid dimming rates and up to SI{˜25}% depth, lasting for SIrange{2}{4} day. In previous works based on optical and mid-infrared photometry, this object was inconsistently classified as a possible quasar or a white dwarf. We conducted follow-up observations both photometrically with GROND on the MPI/ESO SI{2.2} meter telescope in La Silla (Chile) and spectroscopically with FIRE on the Magellan/Baade SI{6.5} meter telescope. With additional spectroscopy using ESI on the Keck rom{2} SI{10} meter telescope we were able to distinguish between these cases: EPIC 220262993 is a quasar with redshift z=1.42. This is the only known exemplar showing deep dips in flux on such a short time scale.

Patchy screening of the cosmic microwave background by inhomogeneous reionization

NASA Astrophysics Data System (ADS)

Gluscevic, Vera; Kamionkowski, Marc; Hanson, Duncan

2013-02-01

We derive a constraint on patchy screening of the cosmic microwave background from inhomogeneous reionization using off-diagonal TB and TT correlations in WMAP-7 temperature/polarization data. We interpret this as a constraint on the rms optical-depth fluctuation Δτ as a function of a coherence multipole LC. We relate these parameters to a comoving coherence scale, of bubble size RC, in a phenomenological model where reionization is instantaneous but occurs on a crinkly surface, and also to the bubble size in a model of “Swiss cheese” reionization where bubbles of fixed size are spread over some range of redshifts. The current WMAP data are still too weak, by several orders of magnitude, to constrain reasonable models, but forthcoming Planck and future EPIC data should begin to approach interesting regimes of parameter space. We also present constraints on the parameter space imposed by the recent results from the EDGES experiment.

Global Three-dimensional Simulation of the Solar Wind-Magnetosphere Interaction Using a Two-way Coupled Magnetohydrodynamics with Embedded Particle-in-Cell Model

NASA Astrophysics Data System (ADS)

Chen, Y.; Toth, G.; Cassak, P.; Jia, X.; Gombosi, T. I.; Slavin, J. A.; Welling, D. T.; Markidis, S.; Peng, I. B.; Jordanova, V. K.; Henderson, M. G.

2017-12-01

We perform a three-dimensional (3D) global simulation of Earth's magnetosphere with kinetic reconnection physics to study the interaction between the solar wind and Earth's magnetosphere. In this global simulation with magnetohydrodynamics with embedded particle-in-cell model (MHD-EPIC), both the dayside magnetopause reconnection region and the magnetotail reconnection region are covered with a kinetic particle-in-cell code iPIC3D, which is two-way coupled with the global MHD model BATS-R-US. We will describe the dayside reconnection related phenomena, such as the lower hybrid drift instability (LHDI) and the evolution of the flux transfer events (FTEs) along the magnetopause, and compare the simulation results with observations. We will also discuss the response of the magnetotail to the southward IMF. The onset of the tail reconnection and the properties of the magnetotail flux ropes will be discussed.

DSCOVR_EPIC_L2_TO3_01

Atmospheric Science Data Center

2018-04-23

... the long term time series of ozone data from OMI and SBUV instruments. Scene Reflectivity (clouds, aerosolos, and surface) is derived as ... available and are expected to support a wide range of scientific studies. Project Title:  DSCOVR ...

Cultural Trauma and Christian Identity in the Late Medieval Heroic Epic, The Siege of Jerusalem.

PubMed

DeMarco, Patricia A

2015-01-01

This essay examines scenes of violence in the late medieval poem The Siege of Jerusalem in order to reveal the ways in which trauma is used as the grounds upon which Christian/Jewish difference is established. In particular, I argue that this poem serves as an example of a widespread element in Christian chivalric identity, namely the need to manage the repetitive invocation of Christ's crucifixion (ritually repeated through liturgical and poetic invocation) as a means of asserting both the bodily and psychic integrity of the Christian subject in contrast to the violently abjected figure of the Jewish body. The failure of The Siege protagonist, Wespasian, to navigate the cultural trauma of the crucifixion is contrasted to the successful management of trauma by the martial hero, Tancred, in Tasso's epic, Gerusalemme Liberata, illustrating the range of imaginative possibilities for understanding trauma in pre-modern war literature.

Cultural Trauma and Christian Identity in the Late Medieval Heroic Epic, The Siege of Jerusalem.

PubMed

DeMarco, Patricia A

2015-01-01

This essay examines scenes of violence in the late medieval poem The Siege of Jerusalem in order to reveal the ways in which trauma is used as the grounds upon which Christian/Jewish difference is established. In particular, I argue that this poem serves as an example of a widespread element in Christian chivalric identity, namely the need to manage the repetitive invocation of Christ's crucifixion (ritually repeated through liturgical and poetic invocation) as a means of asserting both the bodily and psychic integrity of the Christian subject in contrast to the violently abjected figure of the Jewish body. The failure of The Siege protagonist, Wespasian, to navigate the cultural trauma of the crucifixion is contrasted to the successful management of trauma by the martial hero, Tancred, in Tasso's epic, Gerusalemme Liberata, illustrating the range of imaginative possibilities for understanding trauma in pre-modern war literature.

The first sub-70 min non-interacting WD-BD system: EPIC212235321

NASA Astrophysics Data System (ADS)

Casewell, S. L.; Braker, I. P.; Parsons, S. G.; Hermes, J. J.; Burleigh, M. R.; Belardi, C.; Chaushev, A.; Finch, N. L.; Roy, M.; Littlefair, S. P.; Goad, M.; Dennihy, E.

2018-05-01

We present the discovery of the shortest period, non-interacting, white dwarf-brown dwarf post-common-envelope binary known. The K2 light curve shows the system, EPIC 21223532 has a period of 68.2 min and is not eclipsing, but does show a large reflection effect due to the irradiation of the brown dwarf by the white dwarf primary. Spectra show hydrogen, magnesium, and calcium emission features from the brown dwarf's irradiated hemisphere, and the mass indicates the spectral type is likely to be L3. Despite having a period substantially lower than the cataclysmic variable period minimum, this system is likely a pre-cataclysmic binary, recently emerged from the common-envelope. These systems are rare, but provide limits on the lowest mass object that can survive common-envelope evolution, and information about the evolution of white dwarf progenitors, and post-common-envelope evolution.

Enhancement of real-time EPICS IOC PV management for the data archiving system

NASA Astrophysics Data System (ADS)

Kim, Jae-Ha

2015-10-01

The operation of a 100-MeV linear proton accelerator, the major driving values and experimental data need to be archived. According to the experimental conditions, different data are required. Functions that can add new data and delete data in real time need to be implemented. In an experimental physics and industrial control system (EPICS) input output controller (IOC), the value of process variables (PVs) are matched with the driving values and data. The PV values are archived in text file format by using the channel archiver. There is no need to create a database (DB) server, just a need for large hard disk. Through the web, the archived data can be loaded, and new PV values can be archived without stopping the archive engine. The details of the implementation of a data archiving system with channel archiver are presented, and some preliminary results are reported.

Creating an EPICS Based Test Stand Development System for a BPM Digitizer of the Linac Coherent Light Source

DOE Office of Scientific and Technical Information (OSTI.GOV)

Not Available

2011-06-22

The Linac Coherent Light Source (LCLS) is required to deliver a high quality electron beam for producing coherent X-rays. As a result, high resolution beam position monitoring is required. The Beam Position Monitor (BPM) digitizer acquires analog signals from the beam line and digitizes them to obtain beam position data. Although Matlab is currently being used to test the BPM digitizer?s functions and capability, the Controls Department at SLAC prefers to use Experimental Physics and Industrial Control Systems (EPICS). This paper discusses the transition of providing similar as well as enhanced functionalities, than those offered by Matlab, to test themore » digitizer. Altogether, the improved test stand development system can perform mathematical and statistical calculations with the waveform signals acquired from the digitizer and compute the fast Fourier transform (FFT) of the signals. Finally, logging of meaningful data into files has been added.« less

The Knowledge Program: an Innovative, Comprehensive Electronic Data Capture System and Warehouse

PubMed Central

Katzan, Irene; Speck, Micheal; Dopler, Chris; Urchek, John; Bielawski, Kay; Dunphy, Cheryl; Jehi, Lara; Bae, Charles; Parchman, Alandra

2011-01-01

Data contained in the electronic health record (EHR) present a tremendous opportunity to improve quality-of-care and enhance research capabilities. However, the EHR is not structured to provide data for such purposes: most clinical information is entered as free text and content varies substantially between providers. Discrete information on patients’ functional status is typically not collected. Data extraction tools are often unavailable. We have developed the Knowledge Program (KP), a comprehensive initiative to improve the collection of discrete clinical information into the EHR and the retrievability of data for use in research, quality, and patient care. A distinct feature of the KP is the systematic collection of patient-reported outcomes, which is captured discretely, allowing more refined analyses of care outcomes. The KP capitalizes on features of the Epic EHR and utilizes an external IT infrastructure distinct from Epic for enhanced functionality. Here, we describe the development and implementation of the KP. PMID:22195124

The Nature of the Flaring EUVE Companion to HD 43162

NASA Technical Reports Server (NTRS)

Kulkarni, Shrinivas R.

2005-01-01

The purpose of our program was to observe and characterize the companion to HD 43162, EUVE J0614-2354, which (serendipitously) experienced an enormous flare event during our EUVE observation of HD 43162, one of the nearby solar analogs that we observed during our survey of this population. Our observation was carried out and the data have been received and reduced. We are able to identify EUVE J0614-2354 in both the X-ray (EPIC MOS + PN) and the UV (OM) data, which provides a sub-arcsecond position for this source. Our findings are consistent with the analysis of Christian et al. (2003a,b), who identify EUVE J0614-2354 with a coronally-active M-dwarf star at distance d = 15 plus or minus 5pc. The X-ray spectrum from the EPIC data are also consistent with this identification.

Road traffic noise, air pollution and incident cardiovascular disease: A joint analysis of the HUNT, EPIC-Oxford and UK Biobank cohorts.

PubMed

Cai, Yutong; Hodgson, Susan; Blangiardo, Marta; Gulliver, John; Morley, David; Fecht, Daniela; Vienneau, Danielle; de Hoogh, Kees; Key, Tim; Hveem, Kristian; Elliott, Paul; Hansell, Anna L

2018-05-01

This study aimed to investigate the effects of long-term exposure to road traffic noise and air pollution on incident cardiovascular disease (CVD) in three large cohorts: HUNT, EPIC-Oxford and UK Biobank. In pooled complete-case sample of the three cohorts from Norway and the United Kingdom (N = 355,732), 21,081 incident all CVD cases including 5259 ischemic heart disease (IHD) and 2871 cerebrovascular cases were ascertained between baseline (1993-2010) and end of follow-up (2008-2013) through medical record linkage. Annual mean 24-hour weighted road traffic noise (Lden) and air pollution (particulate matter with aerodynamic diameter ≤ 10 μm [PM10], ≤2.5 μm [PM2.5] and nitrogen dioxide [NO2]) exposure at baseline address was modelled using a simplified version of the Common Noise Assessment Methods in Europe (CNOSSOS-EU) and European-wide Land Use Regression models. Individual-level covariate data were harmonised and physically pooled across the three cohorts. Analysis was via Cox proportional hazard model with mutual adjustments for both noise and air pollution and potential confounders. No significant associations were found between annual mean Lden and incident CVD, IHD or cerebrovascular disease in the overall population except that the association with incident IHD was significant among current-smokers. In the fully adjusted models including adjustment for Lden, an interquartile range (IQR) higher PM10 (4.1 μg/m3) or PM2.5 (1.4 μg/m3) was associated with a 5.8% (95%CI: 2.5%-9.3%) and 3.7% (95%CI: 0.2%-7.4%) higher risk for all incident CVD respectively. No significant associations were found between NO2 and any of the CVD outcomes. We found suggestive evidence of a possible association between road traffic noise and incident IHD, consistent with current literature. Long-term particulate air pollution exposure, even at concentrations below current European air quality standards, was significantly associated with incident CVD. Copyright © 2018 Elsevier Ltd. All rights reserved.

Health-related quality of life using SF-8 and EPIC questionnaires after treatment with radical retropubic prostatectomy and permanent prostate brachytherapy.

PubMed

Hashine, Katsuyoshi; Kusuhara, Yoshito; Miura, Noriyoshi; Shirato, Akitomi; Sumiyoshi, Yoshiteru; Kataoka, Masaaki

2009-08-01

The health-related quality of life (HRQOL) after treatment of prostate cancer is examined using a new HRQOL tool. HRQOL, based on the expanded prostate cancer index composite (EPIC) and SF-8 questionnaires, was prospectively compared after either a radical retropubic prostatectomy (RRP) or a permanent prostate brachytherapy (PPB) at a single institute. Between October 2005 and June 2007, 96 patients were treated by an RRP and 88 patients were treated by a PPB. A HRQOL survey was completed at baseline, and at 1, 3, 6 and 12 months after treatment, prospectively. The general HRQOL in the RRP and PPB groups was not different after 3 months. However, at baseline and 1 month after treatment, the mental component summary was significantly better in the PPB group than in the RRP group. Moreover, the disease-specific HRQOL was worse regarding urinary and sexual functions in the RRP group. Urinary irritative/obstructive was worse in the PPB group, but urinary incontinence was worse in the RRP group and had not recovered to baseline after 12 months. The bowel function and bother were worse in the PPB group than in the RRP group after 3 months. In the RRP group, the patients with nerve sparing demonstrated the same scores in sexual function as the PPB group. This prospective study revealed the differences in the HRQOL after an RRP and PPB. Disease-specific HRQOL is clarified by using EPIC survey. These results will be helpful for making treatment decisions.

Health-related Quality of Life using SF-8 and EPIC Questionnaires after Treatment with Radical Retropubic Prostatectomy and Permanent Prostate Brachytherapy

PubMed Central

Hashine, Katsuyoshi; Kusuhara, Yoshito; Miura, Noriyoshi; Shirato, Akitomi; Sumiyoshi, Yoshiteru; Kataoka, Masaaki

2009-01-01

Objective The health-related quality of life (HRQOL) after treatment of prostate cancer is examined using a new HRQOL tool. HRQOL, based on the expanded prostate cancer index composite (EPIC) and SF-8 questionnaires, was prospectively compared after either a radical retropubic prostatectomy (RRP) or a permanent prostate brachytherapy (PPB) at a single institute. Methods Between October 2005 and June 2007, 96 patients were treated by an RRP and 88 patients were treated by a PPB. A HRQOL survey was completed at baseline, and at 1, 3, 6 and 12 months after treatment, prospectively. Results The general HRQOL in the RRP and PPB groups was not different after 3 months. However, at baseline and 1 month after treatment, the mental component summary was significantly better in the PPB group than in the RRP group. Moreover, the disease-specific HRQOL was worse regarding urinary and sexual functions in the RRP group. Urinary irritative/obstructive was worse in the PPB group, but urinary incontinence was worse in the RRP group and had not recovered to baseline after 12 months. The bowel function and bother were worse in the PPB group than in the RRP group after 3 months. In the RRP group, the patients with nerve sparing demonstrated the same scores in sexual function as the PPB group. Conclusions This prospective study revealed the differences in the HRQOL after an RRP and PPB. Disease-specific HRQOL is clarified by using EPIC survey. These results will be helpful for making treatment decisions. PMID:19477898

The EPIC study: a lesson to learn.

PubMed

Auerswald, G; Kurnik, K; Aledort, L M; Chehadeh, H; Loew-Baselli, A; Steinitz, K; Reininger, A J

2015-09-01

Inhibitory antibodies to factor VIII occur in about 30% of previously untreated patients (PUPs) and are the most serious complication of haemophilia A. It is unclear why some patients develop inhibitors and others do not. The Early Prophylaxis Immunologic Challenge (EPIC) study was designed to test the hypothesis that inhibitor incidence in PUPs with severe or moderately severe haemophilia A could be reduced when a once-weekly FVIII prophylaxis starts with 25 IU kg(-1) rAHF-PFM before 1 year of age and immunological danger signals are minimized. These signals were minimized by avoiding: surgery; the first FVIII infusion during severe bleeding or an infection; central venous access devices and administering vaccinations intramuscularly 3-4 days before or after FVIII. Eight of the 19 treated subjects (42.1%) developed confirmed inhibitors. Eleven of the 19 treated subjects were PUPs without any prior exposure to FVIII. Three of them (27.3%) developed a confirmed inhibitor together with FVIII-binding antibodies. The study was stopped because the likelihood to reach the primary objective was minimal, a decision endorsed by the data safety monitoring board. Because of early termination, the EPIC study hypothesis could not be corroborated. Nonetheless, our data analyses indicate that the current definition of an inhibitor only based on plasma inhibitor activity ≥0.6 BU mL(-1) may not always reflect the presence of FVIII-neutralizing antibodies. The findings of this study teach us that low-level inhibitor activity results need in addition a confirmatory test and/or the assessment of the therapeutic response. © 2015 John Wiley & Sons Ltd.

Sources of Pre-Analytical Variations in Yield of DNA Extracted from Blood Samples: Analysis of 50,000 DNA Samples in EPIC

PubMed Central

Caboux, Elodie; Lallemand, Christophe; Ferro, Gilles; Hémon, Bertrand; Mendy, Maimuna; Biessy, Carine; Sims, Matt; Wareham, Nick; Britten, Abigail; Boland, Anne; Hutchinson, Amy; Siddiq, Afshan; Vineis, Paolo; Riboli, Elio; Romieu, Isabelle; Rinaldi, Sabina; Gunter, Marc J.; Peeters, Petra H. M.; van der Schouw, Yvonne T.; Travis, Ruth; Bueno-de-Mesquita, H. Bas; Canzian, Federico; Sánchez, Maria-José; Skeie, Guri; Olsen, Karina Standahl; Lund, Eiliv; Bilbao, Roberto; Sala, Núria; Barricarte, Aurelio; Palli, Domenico; Navarro, Carmen; Panico, Salvatore; Redondo, Maria Luisa; Polidoro, Silvia; Dossus, Laure; Boutron-Ruault, Marie Christine; Clavel-Chapelon, Françoise; Trichopoulou, Antonia; Trichopoulos, Dimitrios; Lagiou, Pagona; Boeing, Heiner; Fisher, Eva; Tumino, Rosario; Agnoli, Claudia; Hainaut, Pierre

2012-01-01

The European Prospective Investigation into Cancer and nutrition (EPIC) is a long-term, multi-centric prospective study in Europe investigating the relationships between cancer and nutrition. This study has served as a basis for a number of Genome-Wide Association Studies (GWAS) and other types of genetic analyses. Over a period of 5 years, 52,256 EPIC DNA samples have been extracted using an automated DNA extraction platform. Here we have evaluated the pre-analytical factors affecting DNA yield, including anthropometric, epidemiological and technical factors such as center of subject recruitment, age, gender, body-mass index, disease case or control status, tobacco consumption, number of aliquots of buffy coat used for DNA extraction, extraction machine or procedure, DNA quantification method, degree of haemolysis and variations in the timing of sample processing. We show that the largest significant variations in DNA yield were observed with degree of haemolysis and with center of subject recruitment. Age, gender, body-mass index, cancer case or control status and tobacco consumption also significantly impacted DNA yield. Feedback from laboratories which have analyzed DNA with different SNP genotyping technologies demonstrate that the vast majority of samples (approximately 88%) performed adequately in different types of assays. To our knowledge this study is the largest to date to evaluate the sources of pre-analytical variations in DNA extracted from peripheral leucocytes. The results provide a strong evidence-based rationale for standardized recommendations on blood collection and processing protocols for large-scale genetic studies. PMID:22808065

Dietary intake of the water-soluble vitamins B1, B2, B6, B12 and C in 10 countries in the European Prospective Investigation into Cancer and Nutrition.

PubMed

Olsen, A; Halkjaer, J; van Gils, C H; Buijsse, B; Verhagen, H; Jenab, M; Boutron-Ruault, M C; Ericson, U; Ocké, M C; Peeters, P H M; Touvier, M; Niravong, M; Waaseth, M; Skeie, G; Khaw, K T; Travis, R; Ferrari, P; Sanchez, M J; Agudo, A; Overvad, K; Linseisen, J; Weikert, C; Sacerdote, C; Evangelista, A; Zylis, D; Tsiotas, K; Manjer, J; van Guelpen, B; Riboli, E; Slimani, N; Bingham, S

2009-11-01

To describe the intake of vitamins thiamine (B1), riboflavin (B2), B6 (pyridoxine), B12 (cobalamine) and C (ascorbic acid) and their food sources among 27 centres in 10 countries participating in the European Prospective Investigation into Cancer and Nutrition (EPIC) study. Between 1995 and 2000, 36 034 persons aged between 35 and 74 years were administered a standardized 24-h dietary recall using a computerized interview software programme (EPIC-SOFT). Intakes of the four B vitamins and vitamin C were estimated using the standardized EPIC Nutrient Database (ENDB). Mean intakes were adjusted for age and weighted by season and day of recall. Intake of B vitamins did not vary considerably between centres, except in the UK health-conscious cohort, in which substantially higher intakes of thiamine and lower intakes of vitamin B12 were reported compared with other centres. Overall, meat was the most important contributor to the B vitamins in all centres except in the UK health-conscious group. Vitamin C showed a clear geographical gradient, with higher intakes in the southern centres as compared with the northern ones; this was more pronounced in men than in women. Vegetables and fruits were major contributors to vitamin C in all centres, but juices and potatoes were also important sources in the northern centres. This study showed no major differences across centres in the mean intakes of B vitamins (thiamine, riboflavin, B6, B12), whereas a tendency towards a north-south gradient was observed for vitamin C.

DSCOVR_EPIC_L2_VESDR_01

Atmospheric Science Data Center

2018-06-28

... improving forecasting of near surface weather. DASF provides information critical to accounting for structural contributions to measurements ... derived products.   We also provide two ancillary science data products. They are  10 km SIN Grid Land Cover Type and  ...