Comprehensive genomic analysis identifies pathogenic variants in maturity-onset diabetes of the young (MODY) patients in South India.

PubMed

Mohan, Viswanathan; Radha, Venkatesan; Nguyen, Thong T; Stawiski, Eric W; Pahuja, Kanika Bajaj; Goldstein, Leonard D; Tom, Jennifer; Anjana, Ranjit Mohan; Kong-Beltran, Monica; Bhangale, Tushar; Jahnavi, Suresh; Chandni, Radhakrishnan; Gayathri, Vijay; George, Paul; Zhang, Na; Murugan, Sakthivel; Phalke, Sameer; Chaudhuri, Subhra; Gupta, Ravi; Zhang, Jingli; Santhosh, Sam; Stinson, Jeremy; Modrusan, Zora; Ramprasad, V L; Seshagiri, Somasekar; Peterson, Andrew S

2018-02-13

Maturity-onset diabetes of the young (MODY) is an early-onset, autosomal dominant form of non-insulin dependent diabetes. Genetic diagnosis of MODY can transform patient management. Earlier data on the genetic predisposition to MODY have come primarily from familial studies in populations of European origin. In this study, we carried out a comprehensive genomic analysis of 289 individuals from India that included 152 clinically diagnosed MODY cases to identify variants in known MODY genes. Further, we have analyzed exome data to identify putative MODY relevant variants in genes previously not implicated in MODY. Functional validation of MODY relevant variants was also performed. We found MODY 3 (HNF1A; 7.2%) to be most frequently mutated followed by MODY 12 (ABCC8; 3.3%). They together account for ~ 11% of the cases. In addition to known MODY genes, we report the identification of variants in RFX6, WFS1, AKT2, NKX6-1 that may contribute to development of MODY. Functional assessment of the NKX6-1 variants showed that they are functionally impaired. Our findings showed HNF1A and ABCC8 to be the most frequently mutated MODY genes in south India. Further we provide evidence for additional MODY relevant genes, such as NKX6-1, and these require further validation.

Substantial proportion of MODY among multiplex families participating in a Type 1 diabetes prediction programme.

PubMed

Petruzelkova, L; Dusatkova, P; Cinek, O; Sumnik, Z; Pruhova, S; Hradsky, O; Vcelakova, J; Lebl, J; Kolouskova, S

2016-12-01

Patients with maturity-onset diabetes of the young (MODY) might be over-represented in families with histories of Type 1 diabetes. Our aim was to re-evaluate families participating in the Czech T1D Prediction Programme (PREDIA.CZ) with at least two members affected with diabetes to assess the proportion of MODY among these families and determine its most significant clinical predictors. Of the 557 families followed up by the PREDIA.CZ, 53 (9.5%) had two or more family members with diabetes. One proband with diabetes from these families was chosen for direct sequencing of the GCK, HNF1A, HNF4A and INS genes. Non-parametric tests and a linear logistic regression model were used to evaluate differences between MODY and non-MODY families. MODY was genetically diagnosed in 24 of the 53 families with multiple occurrences of diabetes (45%). Mutations were detected most frequently in GCK (58%), followed by HNF1A (38%) and INS (4%). MODY families were more likely to have a parent with diabetes and had a higher proportion of females with diabetes than non-MODY families. Higher age (P < 0.001), a lower level of HbA 1c (P < 0.001) at clinical onset and at least two generations affected by diabetes were the variables most predictive for probands of MODY families already presenting with diabetes. A prediction programme for Type 1 diabetes would provide a useful new source of patients with MODY most likely to benefit from an accurate diagnosis. This identification has implications for patient treatment and disease prognosis. © 2015 Diabetes UK.

An enhanced TIMESAT algorithm for estimating vegetation phenology metrics from MODIS data

USGS Publications Warehouse

Tan, B.; Morisette, J.T.; Wolfe, R.E.; Gao, F.; Ederer, G.A.; Nightingale, J.; Pedelty, J.A.

2011-01-01

An enhanced TIMESAT algorithm was developed for retrieving vegetation phenology metrics from 250 m and 500 m spatial resolution Moderate Resolution Imaging Spectroradiometer (MODIS) vegetation indexes (VI) over North America. MODIS VI data were pre-processed using snow-cover and land surface temperature data, and temporally smoothed with the enhanced TIMESAT algorithm. An objective third derivative test was applied to define key phenology dates and retrieve a set of phenology metrics. This algorithm has been applied to two MODIS VIs: Normalized Difference Vegetation Index (NDVI) and Enhanced Vegetation Index (EVI). In this paper, we describe the algorithm and use EVI as an example to compare three sets of TIMESAT algorithm/MODIS VI combinations: a) original TIMESAT algorithm with original MODIS VI, b) original TIMESAT algorithm with pre-processed MODIS VI, and c) enhanced TIMESAT and pre-processed MODIS VI. All retrievals were compared with ground phenology observations, some made available through the National Phenology Network. Our results show that for MODIS data in middle to high latitude regions, snow and land surface temperature information is critical in retrieving phenology metrics from satellite observations. The results also show that the enhanced TIMESAT algorithm can better accommodate growing season start and end dates that vary significantly from year to year. The TIMESAT algorithm improvements contribute to more spatial coverage and more accurate retrievals of the phenology metrics. Among three sets of TIMESAT/MODIS VI combinations, the start of the growing season metric predicted by the enhanced TIMESAT algorithm using pre-processed MODIS VIs has the best associations with ground observed vegetation greenup dates. ?? 2010 IEEE.

An Enhanced TIMESAT Algorithm for Estimating Vegetation Phenology Metrics from MODIS Data

NASA Technical Reports Server (NTRS)

Tan, Bin; Morisette, Jeffrey T.; Wolfe, Robert E.; Gao, Feng; Ederer, Gregory A.; Nightingale, Joanne; Pedelty, Jeffrey A.

2012-01-01

An enhanced TIMESAT algorithm was developed for retrieving vegetation phenology metrics from 250 m and 500 m spatial resolution Moderate Resolution Imaging Spectroradiometer (MODIS) vegetation indexes (VI) over North America. MODIS VI data were pre-processed using snow-cover and land surface temperature data, and temporally smoothed with the enhanced TIMESAT algorithm. An objective third derivative test was applied to define key phenology dates and retrieve a set of phenology metrics. This algorithm has been applied to two MODIS VIs: Normalized Difference Vegetation Index (NDVI) and Enhanced Vegetation Index (EVI). In this paper, we describe the algorithm and use EVI as an example to compare three sets of TIMESAT algorithm/MODIS VI combinations: a) original TIMESAT algorithm with original MODIS VI, b) original TIMESAT algorithm with pre-processed MODIS VI, and c) enhanced TIMESAT and pre-processed MODIS VI. All retrievals were compared with ground phenology observations, some made available through the National Phenology Network. Our results show that for MODIS data in middle to high latitude regions, snow and land surface temperature information is critical in retrieving phenology metrics from satellite observations. The results also show that the enhanced TIMESAT algorithm can better accommodate growing season start and end dates that vary significantly from year to year. The TIMESAT algorithm improvements contribute to more spatial coverage and more accurate retrievals of the phenology metrics. Among three sets of TIMESAT/MODIS VI combinations, the start of the growing season metric predicted by the enhanced TIMESAT algorithm using pre-processed MODIS VIs has the best associations with ground observed vegetation greenup dates.

CERES Single Scanner Satellite Footprint, TOA, Surface Fluxes and Clouds (SSF) data in HDF (CER_SSF_Terra-FM2-MODIS_Edition2A)

NASA Technical Reports Server (NTRS)

Wielicki, Bruce A. (Principal Investigator)

The Single Scanner Footprint TOA/Surface Fluxes and Clouds (SSF) product contains one hour of instantaneous Clouds and the Earth's Radiant Energy System (CERES) data for a single scanner instrument. The SSF combines instantaneous CERES data with scene information from a higher-resolution imager such as Visible/Infrared Scanner (VIRS) on TRMM or Moderate-Resolution Imaging Spectroradiometer (MODIS) on Terra and Aqua. Scene identification and cloud properties are defined at the higher imager resolution and these data are averaged over the larger CERES footprint. For each CERES footprint, the SSF contains the number of cloud layers and for each layer the cloud amount, height, temperature, pressure, optical depth, emissivity, ice and liquid water path, and water particle size. The SSF also contains the CERES filtered radiances for the total, shortwave (SW), and window (WN) channels and the unfiltered SW, longwave (LW), and WN radiances. The SW, LW, and WN radiances at spacecraft altitude are converted to Top-of-the-Atmosphere (TOA) fluxes based on the imager defined scene. These TOA fluxes are used to estimate surface fluxes. Only footprints with adequate imager coverage are included on CER_SSF_TRMM-PFM-VIRS_Subset_Edition1the SSF which is much less than the full set of footprints on the CERES ES-8 product. The following CERES SSF data sets are currently available: CER_SSF_TRMM-PFM-VIRS_Edition1 CER_SSF_TRMM-PFM-VIRS_Subset_Edition1 CER_SSF_TRMM-PFM-VIRS_Edition2A CER_SSF_TRMM-SIM-VIRS_Edition2_VIRSonly CER_SSF_TRMM-PFM-VIRS_Edition2A-TransOps CER_SSF_TRMM-PFM-VIRS_Edition2B-TransOps CER_SSF_TRMM-PFM-VIRS_Edition2B CER_SSF_Terra-FM1-MODIS_Edition1A CER_SSF_Terra-FM1-MODIS_Edition1A CER_SSF_Terra-FM1-MODIS_Edition2A CER_SSF_Terra-FM2-MODIS_Edition2A CER_SSF_Terra-FM1-MODIS_Edition2B CER_SSF_Terra-FM2-MODIS_Edition2B CER_SSF_Aqua-FM4-MODIS_Beta1 CER_SSF_Aqua-FM3-MODIS_Beta2 CER_SSF_Aqua-FM4-MODIS_Beta2. [Location=GLOBAL] [Temporal_Coverage: Start_Date=1998-01-01; Stop_Date=2003-12-31] [Spatial_Coverage: Southernmost_Latitude=-90; Northernmost_Latitude=90; Westernmost_Longitude=-180; Easternmost_Longitude=180] [Data_Resolution: Temporal_Resolution=1 hour; Temporal_Resolution_Range=Hourly - < Daily].

CERES Single Satellite Footprint, TOA and Surface Fluxes, Clouds (SSF) data in HDF (CER_SSF_Aqua-FM4-MODIS_Edition2A)

NASA Technical Reports Server (NTRS)

Wielicki, Bruce A. (Principal Investigator)

The Single Scanner Footprint TOA/Surface Fluxes and Clouds (SSF) product contains one hour of instantaneous Clouds and the Earth's Radiant Energy System (CERES) data for a single scanner instrument. The SSF combines instantaneous CERES data with scene information from a higher-resolution imager such as Visible/Infrared Scanner (VIRS) on TRMM or Moderate-Resolution Imaging Spectroradiometer (MODIS) on Terra and Aqua. Scene identification and cloud properties are defined at the higher imager resolution and these data are averaged over the larger CERES footprint. For each CERES footprint, the SSF contains the number of cloud layers and for each layer the cloud amount, height, temperature, pressure, optical depth, emissivity, ice and liquid water path, and water particle size. The SSF also contains the CERES filtered radiances for the total, shortwave (SW), and window (WN) channels and the unfiltered SW, longwave (LW), and WN radiances. The SW, LW, and WN radiances at spacecraft altitude are converted to Top-of-the-Atmosphere (TOA) fluxes based on the imager defined scene. These TOA fluxes are used to estimate surface fluxes. Only footprints with adequate imager coverage are included on CER_SSF_TRMM-PFM-VIRS_Subset_Edition1the SSF which is much less than the full set of footprints on the CERES ES-8 product. The following CERES SSF data sets are currently available: CER_SSF_TRMM-PFM-VIRS_Edition1 CER_SSF_TRMM-PFM-VIRS_Subset_Edition1 CER_SSF_TRMM-PFM-VIRS_Edition2A CER_SSF_TRMM-SIM-VIRS_Edition2_VIRSonly CER_SSF_TRMM-PFM-VIRS_Edition2A-TransOps CER_SSF_TRMM-PFM-VIRS_Edition2B-TransOps CER_SSF_TRMM-PFM-VIRS_Edition2B CER_SSF_Terra-FM1-MODIS_Edition1A CER_SSF_Terra-FM1-MODIS_Edition1A CER_SSF_Terra-FM1-MODIS_Edition2A CER_SSF_Terra-FM2-MODIS_Edition2A CER_SSF_Terra-FM1-MODIS_Edition2B CER_SSF_Terra-FM2-MODIS_Edition2B CER_SSF_Aqua-FM4-MODIS_Beta1 CER_SSF_Aqua-FM3-MODIS_Beta2 CER_SSF_Aqua-FM4-MODIS_Beta2. [Location=GLOBAL] [Temporal_Coverage: Start_Date=1998-01-01; Stop_Date=2005-09-16] [Spatial_Coverage: Southernmost_Latitude=-90; Northernmost_Latitude=90; Westernmost_Longitude=-180; Easternmost_Longitude=180] [Data_Resolution: Temporal_Resolution=1 hour; Temporal_Resolution_Range=Hourly - < Daily].

CERES Single Scanner Satellite Footprint, TOA, Surface Fluxes and Clouds (SSF) data in HDF (CER_SSF_Aqua-FM4-MODIS_Edition1B)

NASA Technical Reports Server (NTRS)

Wielicki, Bruce A. (Principal Investigator)

The Single Scanner Footprint TOA/Surface Fluxes and Clouds (SSF) product contains one hour of instantaneous Clouds and the Earth's Radiant Energy System (CERES) data for a single scanner instrument. The SSF combines instantaneous CERES data with scene information from a higher-resolution imager such as Visible/Infrared Scanner (VIRS) on TRMM or Moderate-Resolution Imaging Spectroradiometer (MODIS) on Terra and Aqua. Scene identification and cloud properties are defined at the higher imager resolution and these data are averaged over the larger CERES footprint. For each CERES footprint, the SSF contains the number of cloud layers and for each layer the cloud amount, height, temperature, pressure, optical depth, emissivity, ice and liquid water path, and water particle size. The SSF also contains the CERES filtered radiances for the total, shortwave (SW), and window (WN) channels and the unfiltered SW, longwave (LW), and WN radiances. The SW, LW, and WN radiances at spacecraft altitude are converted to Top-of-the-Atmosphere (TOA) fluxes based on the imager defined scene. These TOA fluxes are used to estimate surface fluxes. Only footprints with adequate imager coverage are included on CER_SSF_TRMM-PFM-VIRS_Subset_Edition1the SSF which is much less than the full set of footprints on the CERES ES-8 product. The following CERES SSF data sets are currently available: CER_SSF_TRMM-PFM-VIRS_Edition1 CER_SSF_TRMM-PFM-VIRS_Subset_Edition1 CER_SSF_TRMM-PFM-VIRS_Edition2A CER_SSF_TRMM-SIM-VIRS_Edition2_VIRSonly CER_SSF_TRMM-PFM-VIRS_Edition2A-TransOps CER_SSF_TRMM-PFM-VIRS_Edition2B-TransOps CER_SSF_TRMM-PFM-VIRS_Edition2B CER_SSF_Terra-FM1-MODIS_Edition1A CER_SSF_Terra-FM1-MODIS_Edition1A CER_SSF_Terra-FM1-MODIS_Edition2A CER_SSF_Terra-FM2-MODIS_Edition2A CER_SSF_Terra-FM1-MODIS_Edition2B CER_SSF_Terra-FM2-MODIS_Edition2B CER_SSF_Aqua-FM4-MODIS_Beta1 CER_SSF_Aqua-FM3-MODIS_Beta2 CER_SSF_Aqua-FM4-MODIS_Beta2. [Location=GLOBAL] [Temporal_Coverage: Start_Date=1998-01-01; Stop_Date=2005-03-29] [Spatial_Coverage: Southernmost_Latitude=-90; Northernmost_Latitude=90; Westernmost_Longitude=-180; Easternmost_Longitude=180] [Data_Resolution: Temporal_Resolution=1 hour; Temporal_Resolution_Range=Hourly - < Daily].

CERES Single Satellite Footprint, TOA and Surface Fluxes, Clouds (SSF) data in HDF (CER_SSF_Aqua-FM4-MODIS_Ed2A-NoSW)

NASA Technical Reports Server (NTRS)

Wielicki, Bruce A. (Principal Investigator)

The Single Scanner Footprint TOA/Surface Fluxes and Clouds (SSF) product contains one hour of instantaneous Clouds and the Earth's Radiant Energy System (CERES) data for a single scanner instrument. The SSF combines instantaneous CERES data with scene information from a higher-resolution imager such as Visible/Infrared Scanner (VIRS) on TRMM or Moderate-Resolution Imaging Spectroradiometer (MODIS) on Terra and Aqua. Scene identification and cloud properties are defined at the higher imager resolution and these data are averaged over the larger CERES footprint. For each CERES footprint, the SSF contains the number of cloud layers and for each layer the cloud amount, height, temperature, pressure, optical depth, emissivity, ice and liquid water path, and water particle size. The SSF also contains the CERES filtered radiances for the total, shortwave (SW), and window (WN) channels and the unfiltered SW, longwave (LW), and WN radiances. The SW, LW, and WN radiances at spacecraft altitude are converted to Top-of-the-Atmosphere (TOA) fluxes based on the imager defined scene. These TOA fluxes are used to estimate surface fluxes. Only footprints with adequate imager coverage are included on CER_SSF_TRMM-PFM-VIRS_Subset_Edition1the SSF which is much less than the full set of footprints on the CERES ES-8 product. The following CERES SSF data sets are currently available: CER_SSF_TRMM-PFM-VIRS_Edition1 CER_SSF_TRMM-PFM-VIRS_Subset_Edition1 CER_SSF_TRMM-PFM-VIRS_Edition2A CER_SSF_TRMM-SIM-VIRS_Edition2_VIRSonly CER_SSF_TRMM-PFM-VIRS_Edition2A-TransOps CER_SSF_TRMM-PFM-VIRS_Edition2B-TransOps CER_SSF_TRMM-PFM-VIRS_Edition2B CER_SSF_Terra-FM1-MODIS_Edition1A CER_SSF_Terra-FM1-MODIS_Edition1A CER_SSF_Terra-FM1-MODIS_Edition2A CER_SSF_Terra-FM2-MODIS_Edition2A CER_SSF_Terra-FM1-MODIS_Edition2B CER_SSF_Terra-FM2-MODIS_Edition2B CER_SSF_Aqua-FM4-MODIS_Beta1 CER_SSF_Aqua-FM3-MODIS_Beta2 CER_SSF_Aqua-FM4-MODIS_Beta2. [Location=GLOBAL] [Temporal_Coverage: Start_Date=1998-01-01; Stop_Date=2006-01-01] [Spatial_Coverage: Southernmost_Latitude=-90; Northernmost_Latitude=90; Westernmost_Longitude=-180; Easternmost_Longitude=180] [Data_Resolution: Temporal_Resolution=1 hour; Temporal_Resolution_Range=Hourly - < Daily].

CERES Single Scanner Satellite Footprint, TOA, Surface Fluxes and Clouds (SSF) data in HDF (CER_SSF_Terra-FM2-MODIS_Edition2B)

NASA Technical Reports Server (NTRS)

Wielicki, Bruce A. (Principal Investigator)

The Single Scanner Footprint TOA/Surface Fluxes and Clouds (SSF) product contains one hour of instantaneous Clouds and the Earth's Radiant Energy System (CERES) data for a single scanner instrument. The SSF combines instantaneous CERES data with scene information from a higher-resolution imager such as Visible/Infrared Scanner (VIRS) on TRMM or Moderate-Resolution Imaging Spectroradiometer (MODIS) on Terra and Aqua. Scene identification and cloud properties are defined at the higher imager resolution and these data are averaged over the larger CERES footprint. For each CERES footprint, the SSF contains the number of cloud layers and for each layer the cloud amount, height, temperature, pressure, optical depth, emissivity, ice and liquid water path, and water particle size. The SSF also contains the CERES filtered radiances for the total, shortwave (SW), and window (WN) channels and the unfiltered SW, longwave (LW), and WN radiances. The SW, LW, and WN radiances at spacecraft altitude are converted to Top-of-the-Atmosphere (TOA) fluxes based on the imager defined scene. These TOA fluxes are used to estimate surface fluxes. Only footprints with adequate imager coverage are included on CER_SSF_TRMM-PFM-VIRS_Subset_Edition1the SSF which is much less than the full set of footprints on the CERES ES-8 product. The following CERES SSF data sets are currently available: CER_SSF_TRMM-PFM-VIRS_Edition1 CER_SSF_TRMM-PFM-VIRS_Subset_Edition1 CER_SSF_TRMM-PFM-VIRS_Edition2A CER_SSF_TRMM-SIM-VIRS_Edition2_VIRSonly CER_SSF_TRMM-PFM-VIRS_Edition2A-TransOps CER_SSF_TRMM-PFM-VIRS_Edition2B-TransOps CER_SSF_TRMM-PFM-VIRS_Edition2B CER_SSF_Terra-FM1-MODIS_Edition1A CER_SSF_Terra-FM1-MODIS_Edition1A CER_SSF_Terra-FM1-MODIS_Edition2A CER_SSF_Terra-FM2-MODIS_Edition2A CER_SSF_Terra-FM1-MODIS_Edition2B CER_SSF_Terra-FM2-MODIS_Edition2B CER_SSF_Aqua-FM4-MODIS_Beta1 CER_SSF_Aqua-FM3-MODIS_Beta2 CER_SSF_Aqua-FM4-MODIS_Beta2. [Location=GLOBAL] [Temporal_Coverage: Start_Date=1998-01-01; Stop_Date=2006-01-01] [Spatial_Coverage: Southernmost_Latitude=-90; Northernmost_Latitude=90; Westernmost_Longitude=-180; Easternmost_Longitude=180] [Data_Resolution: Temporal_Resolution=1 hour; Temporal_Resolution_Range=Hourly - < Daily].

CERES Single Scanner Satellite Footprint, TOA, Surface Fluxes and Clouds (SSF) data in HDF (CER_SSF_Terra-FM1-MODIS_Edition2A)

NASA Technical Reports Server (NTRS)

Wielicki, Bruce A. (Principal Investigator)

The Single Scanner Footprint TOA/Surface Fluxes and Clouds (SSF) product contains one hour of instantaneous Clouds and the Earth's Radiant Energy System (CERES) data for a single scanner instrument. The SSF combines instantaneous CERES data with scene information from a higher-resolution imager such as Visible/Infrared Scanner (VIRS) on TRMM or Moderate-Resolution Imaging Spectroradiometer (MODIS) on Terra and Aqua. Scene identification and cloud properties are defined at the higher imager resolution and these data are averaged over the larger CERES footprint. For each CERES footprint, the SSF contains the number of cloud layers and for each layer the cloud amount, height, temperature, pressure, optical depth, emissivity, ice and liquid water path, and water particle size. The SSF also contains the CERES filtered radiances for the total, shortwave (SW), and window (WN) channels and the unfiltered SW, longwave (LW), and WN radiances. The SW, LW, and WN radiances at spacecraft altitude are converted to Top-of-the-Atmosphere (TOA) fluxes based on the imager defined scene. These TOA fluxes are used to estimate surface fluxes. Only footprints with adequate imager coverage are included on CER_SSF_TRMM-PFM-VIRS_Subset_Edition1the SSF which is much less than the full set of footprints on the CERES ES-8 product. The following CERES SSF data sets are currently available: CER_SSF_TRMM-PFM-VIRS_Edition1 CER_SSF_TRMM-PFM-VIRS_Subset_Edition1 CER_SSF_TRMM-PFM-VIRS_Edition2A CER_SSF_TRMM-SIM-VIRS_Edition2_VIRSonly CER_SSF_TRMM-PFM-VIRS_Edition2A-TransOps CER_SSF_TRMM-PFM-VIRS_Edition2B-TransOps CER_SSF_TRMM-PFM-VIRS_Edition2B CER_SSF_Terra-FM1-MODIS_Edition1A CER_SSF_Terra-FM1-MODIS_Edition1A CER_SSF_Terra-FM1-MODIS_Edition2A CER_SSF_Terra-FM2-MODIS_Edition2A CER_SSF_Terra-FM1-MODIS_Edition2B CER_SSF_Terra-FM2-MODIS_Edition2B CER_SSF_Aqua-FM4-MODIS_Beta1 CER_SSF_Aqua-FM3-MODIS_Beta2 CER_SSF_Aqua-FM4-MODIS_Beta2. [Location=GLOBAL] [Temporal_Coverage: Start_Date=1998-01-01; Stop_Date=2003-12-31] [Spatial_Coverage: Southernmost_Latitude=-90; Northernmost_Latitude=90; Westernmost_Longitude=-180; Easternmost_Longitude=180] [Data_Resolution: Temporal_Resolution=1 hour; Temporal_Resolution_Range=Hourly - < Daily].

Undiagnosed MODY: Time for Action

PubMed Central

Kleinberger, Jeffrey W.; Pollin, Toni I.

2016-01-01

Maturity-Onset Diabetes of the Young (MODY) is a monogenic form of diabetes that accounts for at least 1% of all cases of diabetes mellitus. MODY classically presents as non-insulin requiring diabetes in lean individuals younger than 25 with evidence of autosomal dominant inheritance, but these criteria do not capture all cases and can also overlap with other diabetes types. Genetic diagnosis of MODY is important for selecting the right treatment, yet ~95% of MODY cases in the U.S. are misdiagnosed. MODY prevalence and characteristics have been well-studied in some populations, such as the UK and Norway, while other ethnicities, like African and Latino, need much more study. Emerging next-generation sequencing methods are making more widespread study and clinical diagnosis increasingly feasible. This review will cover the current epidemiological studies of MODY and barriers and opportunities for moving toward a goal of access to an appropriate diagnosis for all affected individuals. PMID:26458381

[MODY type diabetes: overview and recent findings].

PubMed

Ben Khelifa, Souhaïra; Barboura, Ilhem; Dandana, Azza; Ferchichi, Selima; Miled, Abdelhedi

2011-01-01

We present an update of knowledge on diabetes MODY (maturity onset diabetes of the young), including the recent molecular discoveries, and new diagnostic strategies. Considerable progress has been made in understanding the different molecular abnormalities that cause MODY and the phenotypic consequences resulting therefrom. MODY diabetes is very heterogeneous and is the most common form of monogenic diabetes. Its distribution is worldwide. MODY is an autosomal dominant diabetes mellitus, nonketotic and occurs at an early age (usually before 25 years). To date, at least seven genes are associated with MODY, with frequencies that differ from one population to another. Both 2 and 3 subtypes predominate, while other subtypes (1, 4, 5, 6 and 7) concern only a few families. Since its discovery in the sixties, studies have succeeded to fully clarify the epidemiological, molecular and clinical diagnosis of each subtype, to provide better care for patients. However, the subject of MODY has not yet revealed all its secrets. Indeed, it remains to identify other genes that are associated with MODY X.

Heterozygous ABCC8 mutations are a cause of MODY.

PubMed

Bowman, P; Flanagan, S E; Edghill, E L; Damhuis, A; Shepherd, M H; Paisey, R; Hattersley, A T; Ellard, S

2012-01-01

The ABCC8 gene encodes the sulfonylurea receptor 1 (SUR1) subunit of the pancreatic beta cell ATP-sensitive potassium (K(ATP)) channel. Inactivating mutations cause congenital hyperinsulinism (CHI) and activating mutations cause transient neonatal diabetes (TNDM) or permanent neonatal diabetes (PNDM) that can usually be treated with sulfonylureas. Sulfonylurea sensitivity is also a feature of HNF1A and HNF4A MODY, but patients referred for genetic testing with clinical features of these types of diabetes do not always have mutations in the HNF1A/4A genes. Our aim was to establish whether mutations in the ABCC8 gene cause MODY that is responsive to sulfonylurea therapy. We sequenced the ABCC8 gene in 85 patients with a BMI <30 kg/m², no family history of neonatal diabetes and who were deemed sensitive to sulfonylureas by the referring clinician or were sulfonylurea-treated. All had tested negative for mutations in the HNF1A and HNF4A genes. ABCC8 mutations were found in seven of the 85 (8%) probands. Four patients were heterozygous for previously reported mutations and four novel mutations, E100K, G214R, Q485R and N1245D, were identified. Only four probands fulfilled MODY criteria, with two diagnosed after 25 years and one patient, who had no family history of diabetes, as a result of a proven de novo mutation. ABCC8 mutations can cause MODY in patients whose clinical features are similar to those with HNF1A/4A MODY. Therefore, sequencing of ABCC8 in addition to the known MODY genes should be considered if such features are present, to facilitate optimal clinical management of these patients.

Clinical application of ACMG-AMP guidelines in HNF1A and GCK variants in a cohort of MODY families.

PubMed

Santana, L S; Caetano, L A; Costa-Riquetto, A D; Quedas, E P S; Nery, M; Collett-Solberg, P; Boguszewski, M C S; Vendramini, M F; Crisostomo, L G; Floh, F O; Zarabia, Z I; Kohara, S K; Guastapaglia, L; Passone, C G B; Sewaybricker, L E; Jorge, A A L; Teles, M G

2017-10-01

Maturity-onset diabetes of the young (MODY) is a form of monogenic diabetes with autosomal dominant inheritance. GCK -MODY and HNF1A -MODY are the prevalent subtypes. Currently, there is growing concern regarding the correct interpretation of molecular genetic findings. The American College of Medical Genetics and Genomics (ACMG) updated guidelines to interpret and classify molecular variants. This study aimed to determine the prevalence of MODY ( GCK / HNF1A ) in a large cohort of Brazilian families, to report variants related to phenotype, and to classify them according to ACMG guidelines. One hundred and nine probands were investigated, 45% with clinical suspicion of GCK -MODY and 55% with suspicion of HNF1A -MODY. Twenty-five different variants were identified in GCK gene (30 probands-61% of positivity), and 7 variants in HNF1A (10 probands-17% of positivity). Fourteen of them were novel (12- GCK /2- HNF1A ). ACMG guidelines were able to classify a large portion of variants as pathogenic (36%- GCK /86%- HNF1A ) and likely pathogenic (44%- GCK /14%- HNF1A ), with 16% (5/32) as uncertain significance. This allows us to determine the pathogenicity classification more efficiently, and also reinforces the suspected associations with the phenotype among novel variants. © 2017 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

A decade of molecular genetic testing for MODY: a retrospective study of utilization in The Netherlands.

PubMed

Weinreich, Stephanie S; Bosma, Astrid; Henneman, Lidewij; Rigter, Tessel; Spruijt, Carla M J; Grimbergen, Anneliese J E M A; Breuning, Martijn H; de Koning, Eelco J P; Losekoot, Monique; Cornel, Martina C

2015-01-01

Genetic testing for maturity-onset diabetes of the young (MODY) may be relevant for treatment and prognosis in patients with usually early-onset, non-ketotic, insulin-sensitive diabetes and for monitoring strategies in non-diabetic mutation carriers. This study describes the first 10 years of genetic testing for MODY in The Netherlands in terms of volume and test positive rate, medical setting, purpose of the test and age of patients tested. Some analyses focus on the most prevalent subtype, HNF1A MODY. Data were retrospectively extracted from a laboratory database. In total, 502 individuals were identified with a pathogenic mutation in HNF4A, GCK or HNF1A between 2001 and 2010. Although mutation scanning for MODY was used at an increasing rate, cascade testing was only used for one relative, on average, per positive index patient. Testing for HNF1A MODY was mostly requested by internists and paediatricians, often from regional hospitals. Primary care physicians and clinical geneticists rarely requested genetic testing for HNF1A MODY. Clinical geneticists requested cascade testing relatively more often than other health professionals. A substantial proportion (currently 29%) of HNF1A MODY probands was at least 40 years old at the time of testing. In conclusion, the number of individuals genetically tested for MODY so far in The Netherlands is low compared with previously predicted numbers of patients. Doctors' valuation of the test and patients' and family members' response to (an offer of) genetic testing on the other hand need to be investigated. Efforts may be needed to develop and implement translational guidelines.

Intima-media thickness and endothelial dysfunction in GCK and HNF1A-MODY patients.

PubMed

Szopa, Magdalena; Osmenda, Grzegorz; Wilk, Grzegorz; Matejko, Bartłomiej; Skupien, Jan; Zapala, Barbara; Młynarski, Wojciech; Guzik, Tomasz; Malecki, Maciej T

2015-03-01

Mutations in the glucokinase (GCK) gene, along with hepatocyte nuclear factor 1A (HNF1A) gene mutations, are the most frequent cause of maturity-onset diabetes of the young (MODY). GCK-MODY patients are typically characterized by a moderate fasting hyperglycemia; however, little is known about atherosclerosis and intermediate-related phenotypes in these subjects. To examine carotid artery intima-media thickness (IMT) and endothelial function assessed by brachial artery flow-mediated dilatation (FMD) in GCK gene mutations carriers and HNF1A-MODY. A total of 64 subjects with GCK gene mutations, and 52 HNF1A gene mutation carriers as well as 53 nondiabetic controls were examined. IMT and FMD were assessed by ultrasonography. Appropriate statistical tests were performed to assess differences between the groups, and multivariate linear regression was done for the association with IMT and FMD. The clinical characteristics of all groups were similar with the mean age at examination of 35.1, 41.1, and 39.5 years for GCK, HNF1A and the control group respectively. The highest mean IMT value was in the HNF1A-MODY group: 7.0±1.4 mm, whereas it reached 6.3±1.4 mm in GCK mutation carriers and 6.3±1.3 mm in controls (P=0.008). After adjustment for possible clinical and biochemical cofounders, IMT remained higher in HNF1A-MODY patients as compared with GCK-MODY patients (P=0.02) and controls (P=0.0003). FMD was significantly lower in HNF1A (9.9±4.6%) and GCK-MODY (11.1±4.6%) patients in comparison with controls (13.9±4.7%; P=0.0001). After adjustment, FMD remained lower in HNF1A-MODY (P=0.0005) and GCK-MODY patients (P=0.01) as compared with controls. Both examined MODY groups demonstrated evidence of endothelial dysfunction. In addition, HNF1-MODY patients seem to be more prone to an early atherosclerotic phenotype. © 2015 European Society of Endocrinology.

An Automatic Cloud Mask Algorithm Based on Time Series of MODIS Measurements

NASA Technical Reports Server (NTRS)

Lyapustin, Alexei; Wang, Yujie; Frey, R.

2008-01-01

Quality of aerosol retrievals and atmospheric correction depends strongly on accuracy of the cloud mask (CM) algorithm. The heritage CM algorithms developed for AVHRR and MODIS use the latest sensor measurements of spectral reflectance and brightness temperature and perform processing at the pixel level. The algorithms are threshold-based and empirically tuned. They don't explicitly address the classical problem of cloud search, wherein the baseline clear-skies scene is defined for comparison. Here, we report on a new CM algorithm which explicitly builds and maintains a reference clear-skies image of the surface (refcm) using a time series of MODIS measurements. The new algorithm, developed as part of the Multi-Angle Implementation of Atmospheric Correction (MAIAC) algorithm for MODIS, relies on fact that clear-skies images of the same surface area have a common textural pattern, defined by the surface topography, boundaries of rivers and lakes, distribution of soils and vegetation etc. This pattern changes slowly given the daily rate of global Earth observations, whereas clouds introduce high-frequency random disturbances. Under clear skies, consecutive gridded images of the same surface area have a high covariance, whereas in presence of clouds covariance is usually low. This idea is central to initialization of refcm which is used to derive cloud mask in combination with spectral and brightness temperature tests. The refcm is continuously updated with the latest clear-skies MODIS measurements, thus adapting to seasonal and rapid surface changes. The algorithm is enhanced by an internal dynamic land-water-snow classification coupled with a surface change mask. An initial comparison shows that the new algorithm offers the potential to perform better than the MODIS MOD35 cloud mask in situations where the land surface is changing rapidly, and over Earth regions covered by snow and ice.

Molecular and clinical characterization of glucokinase maturity-onset diabetes of the young (GCK-MODY) in Japanese patients.

PubMed

Kawakita, R; Hosokawa, Y; Fujimaru, R; Tamagawa, N; Urakami, T; Takasawa, K; Moriya, K; Mizuno, H; Maruo, Y; Takuwa, M; Nagasaka, H; Nishi, Y; Yamamoto, Y; Aizu, K; Yorifuji, T

2014-11-01

To investigate the molecular and clinical characteristics of the largest series of Japanese patients with glucokinase maturity-onset diabetes of the young (GCK-MODY), and to find any features specific to Asian people. We enrolled 78 Japanese patients with GCK-MODY from 41 families (55 probands diagnosed at the age of 0-14 years and their 23 adult family members). Mutations were identified by direct sequencing or multiplex ligation-dependent probe amplification of all exons of the GCK gene. Detailed clinical and laboratory data were collected on the probands using questionnaires, which were sent to the treating physicians.　Data on current clinical status and HbA1c levels were also collected from adult patients. A total of 35 different mutations were identified, of which seven were novel. Fasting blood glucose and HbA1c levels of the probands were ≤9.3 mmol/l and ≤56 mmol/mol (7.3%), respectively, and there was considerable variation in their BMI percentiles (0.4-96.2). In total, 25% of the probands had elevated homeostatic assessment of insulin resistance values, and 58.3% of these had evidence of concomitant Type 2 diabetes in their family. The HbA1c levels for adults were slightly higher, up to 61 mmol/mol (7.8%). The incidence of microvascular complications was low. Out of these 78 people with GCK-MODY and 40 additional family members with hyperglycaemia whose genetic status was unknown, only one had diabetic nephropathy. The molecular and clinical features of GCK-MODY in Japanese people are similar to those of other ethnic populations; however, making a diagnosis of GCK-MODY was more challenging in patients with signs of insulin resistance. © 2014 The Authors. Diabetic Medicine © 2014 Diabetes UK.

CERES Single Scanner Satellite Footprint, TOA, Surface Fluxes and Clouds (SSF)- Test data in HDF (CER_SSF_TRMM-PFM-VIRS_Subset-Edition1)

NASA Technical Reports Server (NTRS)

Wielicki, Bruce A. (Principal Investigator)

The Single Scanner Footprint TOA/Surface Fluxes and Clouds (SSF) product contains one hour of instantaneous Clouds and the Earth's Radiant Energy System (CERES) data for a single scanner instrument. The SSF combines instantaneous CERES data with scene information from a higher-resolution imager such as Visible/Infrared Scanner (VIRS) on TRMM or Moderate-Resolution Imaging Spectroradiometer (MODIS) on Terra and Aqua. Scene identification and cloud properties are defined at the higher imager resolution and these data are averaged over the larger CERES footprint. For each CERES footprint, the SSF contains the number of cloud layers and for each layer the cloud amount, height, temperature, pressure, optical depth, emissivity, ice and liquid water path, and water particle size. The SSF also contains the CERES filtered radiances for the total, shortwave (SW), and window (WN) channels and the unfiltered SW, longwave (LW), and WN radiances. The SW, LW, and WN radiances at spacecraft altitude are converted to Top-of-the-Atmosphere (TOA) fluxes based on the imager defined scene. These TOA fluxes are used to estimate surface fluxes. Only footprints with adequate imager coverage are included on CER_SSF_TRMM-PFM-VIRS_Subset_Edition1the SSF which is much less than the full set of footprints on the CERES ES-8 product. The following CERES SSF data sets are currently available: CER_SSF_TRMM-PFM-VIRS_Edition1 CER_SSF_TRMM-PFM-VIRS_Subset_Edition1 CER_SSF_TRMM-PFM-VIRS_Edition2A CER_SSF_TRMM-SIM-VIRS_Edition2_VIRSonly CER_SSF_TRMM-PFM-VIRS_Edition2A-TransOps CER_SSF_TRMM-PFM-VIRS_Edition2B-TransOps CER_SSF_TRMM-PFM-VIRS_Edition2B CER_SSF_Terra-FM1-MODIS_Edition1A CER_SSF_Terra-FM1-MODIS_Edition1A CER_SSF_Terra-FM1-MODIS_Edition2A CER_SSF_Terra-FM2-MODIS_Edition2A CER_SSF_Terra-FM1-MODIS_Edition2B CER_SSF_Terra-FM2-MODIS_Edition2B CER_SSF_Aqua-FM4-MODIS_Beta1 CER_SSF_Aqua-FM3-MODIS_Beta2 CER_SSF_Aqua-FM4-MODIS_Beta2. [Location=GLOBAL] [Temporal_Coverage: Start_Date=1998-01-01; Stop_Date=1998-08-31] [Spatial_Coverage: Southernmost_Latitude=-90; Northernmost_Latitude=90; Westernmost_Longitude=-180; Easternmost_Longitude=180] [Data_Resolution: Temporal_Resolution=1 hour; Temporal_Resolution_Range=Hourly - < Daily].

CERES Single Scanner Satellite Footprint, TOA, Surface Fluxes and Clouds (SSF) data in HDF (CER_SSF_TRMM-PFM-VIRS_Edition1)

NASA Technical Reports Server (NTRS)

Wielicki, Bruce A. (Principal Investigator)

The Single Scanner Footprint TOA/Surface Fluxes and Clouds (SSF) product contains one hour of instantaneous Clouds and the Earth's Radiant Energy System (CERES) data for a single scanner instrument. The SSF combines instantaneous CERES data with scene information from a higher-resolution imager such as Visible/Infrared Scanner (VIRS) on TRMM or Moderate-Resolution Imaging Spectroradiometer (MODIS) on Terra and Aqua. Scene identification and cloud properties are defined at the higher imager resolution and these data are averaged over the larger CERES footprint. For each CERES footprint, the SSF contains the number of cloud layers and for each layer the cloud amount, height, temperature, pressure, optical depth, emissivity, ice and liquid water path, and water particle size. The SSF also contains the CERES filtered radiances for the total, shortwave (SW), and window (WN) channels and the unfiltered SW, longwave (LW), and WN radiances. The SW, LW, and WN radiances at spacecraft altitude are converted to Top-of-the-Atmosphere (TOA) fluxes based on the imager defined scene. These TOA fluxes are used to estimate surface fluxes. Only footprints with adequate imager coverage are included on CER_SSF_TRMM-PFM-VIRS_Subset_Edition1the SSF which is much less than the full set of footprints on the CERES ES-8 product. The following CERES SSF data sets are currently available: CER_SSF_TRMM-PFM-VIRS_Edition1 CER_SSF_TRMM-PFM-VIRS_Subset_Edition1 CER_SSF_TRMM-PFM-VIRS_Edition2A CER_SSF_TRMM-SIM-VIRS_Edition2_VIRSonly CER_SSF_TRMM-PFM-VIRS_Edition2A-TransOps CER_SSF_TRMM-PFM-VIRS_Edition2B-TransOps CER_SSF_TRMM-PFM-VIRS_Edition2B CER_SSF_Terra-FM1-MODIS_Edition1A CER_SSF_Terra-FM1-MODIS_Edition1A CER_SSF_Terra-FM1-MODIS_Edition2A CER_SSF_Terra-FM2-MODIS_Edition2A CER_SSF_Terra-FM1-MODIS_Edition2B CER_SSF_Terra-FM2-MODIS_Edition2B CER_SSF_Aqua-FM4-MODIS_Beta1 CER_SSF_Aqua-FM3-MODIS_Beta2 CER_SSF_Aqua-FM4-MODIS_Beta2. [Location=GLOBAL] [Temporal_Coverage: Start_Date=1998-01-01; Stop_Date=2000-03-31] [Spatial_Coverage: Southernmost_Latitude=-90; Northernmost_Latitude=90; Westernmost_Longitude=-180; Easternmost_Longitude=180] [Data_Resolution: Temporal_Resolution=1 hour; Temporal_Resolution_Range=Hourly - < Daily].

Dynamics of Vegetatin Indices in Tropical and Subtropical Savannas Defined by Ecoregions and Moderate Resolution Imaging Spectoradiometer (MODIS) Land Cover

NASA Technical Reports Server (NTRS)

Hill, Michael J.; Roman, Miguel O.; Schaaf, Crytal B.

2011-01-01

In this study, we explored the capacity of vegetation indices derived from the Moderate Resolution Imaging Spectroradiometer (MODIS) reflectance products to characterize global savannas in Australia, Africa and South America. The savannas were spatially defined and subdivided using the World Wildlife Fund (WWF) global ecoregions and MODIS land cover classes. Average annual profiles of Normalized Difference Vegetation Index, shortwave infrared ratio (SWIR32), White Sky Albedo (WSA) and the Structural Scattering Index (SSI) were created. Metrics derived from average annual profiles of vegetation indices were used to classify savanna ecoregions. The response spaces between vegetation indices were used to examine the potential to derive structural and fractional cover measures. The ecoregions showed distinct temporal profiles and formed groups with similar structural properties, including higher levels of woody vegetation, similar forest savanna mixtures and similar grassland predominance. The potential benefits from the use of combinations of indices to characterize savannas are discussed.

Maturity-onset diabetes of the young as a model for elucidating the multifactorial origin of type 2 diabetes mellitus.

PubMed

Horikawa, Yukio

2018-02-06

Maturity-onset diabetes of the young (MODY) is a form of diabetes classically characterized as having autosomal dominant inheritance, onset before the age of 25 years in at least one family member and partly preserved pancreatic β-cell function. The 14 responsible genes are reported to be MODY type 1~14, of which MODY 2 and 3 might be the most common forms. Although MODY is currently classified as diabetes of a single gene defect, it has become clear that mutations in rare MODYs, such as MODY 5 and MODY 6, have small mutagenic effects and low penetrance. In addition, as there are differences in the clinical phenotypes caused by the same mutation even in the same family, other phenotypic modifying factors are thought to exist; MODY could well have characteristics of type 2 diabetes mellitus, which is of multifactorial origin. Here, we outline the effects of genetic and environmental factors on the known phenotypes of MODY, focusing mainly on the examples of MODY 5 and 6, which have low penetrance, as suggestive models for elucidating the multifactorial origin of type 2 diabetes mellitus. © 2018 The Authors. Journal of Diabetes Investigation published by Asian Association for the Study of Diabetes (AASD) and John Wiley & Sons Australia, Ltd.

Co-inheritance of HNF1a and GCK mutations in a family with maturity-onset diabetes of the young (MODY): implications for genetic testing.

PubMed

López-Garrido, M P; Herranz-Antolín, S; Alija-Merillas, M J; Giralt, P; Escribano, J

2013-09-01

To determine the genetic basis of dominant early-onset diabetes mellitus in two families. Molecular analysis by PCR sequencing of the promoter, the 5' untranslated region (UTR) and exons of both GCK and HNF1A genes was carried out in two families with clinically diagnosed dominant diabetes mellitus. The novel HNF1A c.-154_-160TGGGGGT mutation, located in the 5' UTR, was present in several members of the two families in the heterozygous state. Interestingly, the GCK p.Y61X mutation was also identified in three members of one of the families, and two of them carried both mutations in heterozygosis. To the best of our knowledge, this is the first report of the co-inheritance of GCK and HNF1A mutations and the coexistence of maturity-onset diabetes of the young (MODY) 2, MODY 3 and unusual MODY 2-3 genotypes in the same family. Carriers of both GCK and HNF1A mutations manifested a typical MODY 3 phenotype and showed that the presence of a second mutation in the GCK gene apparently did not modify the clinical outcome, at least at the time of this study. Our data show that co-inheritance of MODY 2 and MODY 3 mutations should be considered, at least in some cases, for accurate genetic testing. © 2012 John Wiley & Sons Ltd.

When is it MODY? Challenges in the Interpretation of Sequence Variants in MODY Genes

PubMed Central

Althari, Sara; Gloyn, Anna L.

2015-01-01

The genomics revolution has raised more questions than it has provided answers. Big data from large population-scale resequencing studies are increasingly deconstructing classic notions of Mendelian disease genetics, which support a simplistic correlation between mutational severity and phenotypic outcome. The boundaries are being blurred as the body of evidence showing monogenic disease-causing alleles in healthy genomes, and in the genomes of individu-als with increased common complex disease risk, continues to grow. In this review, we focus on the newly emerging challenges which pertain to the interpretation of sequence variants in genes implicated in the pathogenesis of maturity-onset diabetes of the young (MODY), a presumed mono-genic form of diabetes characterized by Mendelian inheritance. These challenges highlight the complexities surrounding the assignments of pathogenicity, in particular to rare protein-alerting variants, and bring to the forefront some profound clinical diagnostic implications. As MODY is both genetically and clinically heterogeneous, an accurate molecular diagnosis and cautious extrapolation of sequence data are critical to effective disease management and treatment. The biological and translational value of sequence information can only be attained by adopting a multitude of confirmatory analyses, which interrogate variant implication in disease from every possible angle. Indeed, studies which have effectively detected rare damaging variants in known MODY genes in normoglycemic individuals question the existence of a sin-gle gene mutation scenario: does monogenic diabetes exist when the genetic culprits of MODY have been systematical-ly identified in individuals without MODY? PMID:27111119

Monitoring Phenology as Indicator for Timing of Nutrient Inputs in Northern Gulf Watersheds

DTIC Science & Technology

2010-06-01

region and compared to nutrient monitoring data. A. Image Data This project uses MODIS normalized difference vegetation index ( NDVI ) to create a time...series of land vegetation canopies. MODIS provides a near-daily repeat time for the elimination of cloud contamination, and NDVI has been widely adopted...steps and NDVI was calculated by the defined formula NDVI = (near-infrared reflectance - red reflectance) / (near-infrared reflectance + red

Maturity-onset diabetes of the young (MODY): an update.

PubMed

Anık, Ahmet; Çatlı, Gönül; Abacı, Ayhan; Böber, Ece

2015-03-01

Maturity-onset diabetes of the young (MODY) is a group of monogenic disorders characterized by autosomal dominantly inherited non-insulin dependent form of diabetes classically presenting in adolescence or young adults before the age of 25 years. MODY is a rare cause of diabetes (1% of all cases) and is frequently misdiagnosed as Type 1 diabetes (T1DM) or Type 2 diabetes (T2DM). A precise molecular diagnosis is essential because it leads to optimal treatment of the patients and allows early diagnosis for their asymptomatic family members. Mutations in the glucokinase (GCK) (MODY 2) and hepatocyte nuclear factor (HNF)1A/4A (MODY 3 and MODY 1) genes are the most common causes of MODY. GCK mutations cause a mild, asymptomatic, and stable fasting hyperglycemia usually requiring no specific treatment. However, mutations in the HNF1A and HNF4A cause a progressive pancreatic β-cell dysfunction and hyperglycemia that can result in microvascular complications. Sulfonylureas are effective in these patients by acting on adenosine triphosphate (ATP)-sensitive potassium channels, although insulin therapy may be required later in life. Mutations in the HNF1B (MODY 5) is associated with pancreatic agenesis, renal abnormalities, genital tract malformations, and liver dysfunction. Compared to MODY 1, 2, 3, and 5, the remaining subtypes of MODY have a much lower prevalence. In this review, we summarize the main clinical and laboratory characteristics of the common and rarer causes of MODY.

MODY in Ukraine: genes, clinical phenotypes and treatment.

PubMed

Globa, Evgenia; Zelinska, Nataliya; Elblova, Lenka; Dusatkova, Petra; Cinek, Ondrej; Lebl, Jan; Colclough, Kevin; Ellard, Sian; Pruhova, Stepanka

2017-10-26

Maturity-onset diabetes of the young (MODY) has not been previously studied in Ukraine. We investigated the genetic etiology in a selected cohort of patients with diabetes diagnosed before 18 years of age, and in their family members. Genetic testing of the most prevalent MODY genes (GCK, HNF1A, HNF4A, HNF1B and INS) was undertaken for 36 families (39 affected individuals) by Sanger or targeted next generation sequencing. A genetic diagnosis of MODY was made in 15/39 affected individuals from 12/36 families (33%). HNF1A and HNF4A MODY were the most common subtypes, accounting for 9/15 of MODY cases. Eight patients with HNF1A or HNF4A MODY and inadequate glycemic control were successfully transferred to sulfonylureas. Median HbA1c decreased from 67 mmol/mol (range 58-69) to 47 mmol/mol (range 43-50) (8.3% [7.5-8.5] to 6.4% [6.1-6.7]) 3 months after transfer (p=0.006). Genetic testing identified pathogenic HNF1A and HNF4A variants as the most common cause of MODY in Ukraine. Transfer to sulfonylureas substantially improved the glycemic control of these patients.

To test, or not to test: time for a MODY calculator?

PubMed

Njølstad, P R; Molven, A

2012-05-01

To test, or not to test, that is often the question in diabetes genetics. This is why the paper of Shields et al in the current issue of Diabetologia is so warmly welcomed. MODY is the most common form of monogenic diabetes. Nevertheless, the optimal way of identifying MODY families still poses a challenge both for researchers and clinicians. Hattersley's group in Exeter, UK, have developed an easy-to-use MODY prediction model that can help to identify cases appropriate for genetic testing. By answering eight simple questions on the internet ( www.diabetesgenes.org/content/mody-probability-calculator ), the doctor receives a positive predictive value in return: the probability that the patient has MODY. Thus, the classical binary (yes/no) assessment provided by clinical diagnostic criteria has been substituted by a more rational, quantitative estimate. The model appears to discriminate well between MODY and type 1 and type 2 diabetes when diabetes is diagnosed before the age of 35 years. However, the performance of the MODY probability calculator should now be validated in other settings than where it was developed-and, as always, there is room for some improvements and modifications.

Characterization of beta cell and incretin function in patients with MODY1 (HNF4A MODY) and MODY3 (HNF1A MODY) in a Swedish patient collection.

PubMed

Ekholm, E; Shaat, N; Holst, J J

2012-10-01

The aim of this study was to evaluate the beta cell and incretin function in patients with HNF4A and HNF1A MODY during a test meal. Clinical characteristics and biochemical data (glucose, proinsulin, insulin, C-peptide, GLP-1 and GIP) during a test meal were compared between MODY patients from eight different families. BMI-matched T2D and healthy subjects were used as two separate control groups. The early phase of insulin secretion was attenuated in HNF4A, HNF1A MODY and T2D (AUC0-30 controls: 558.2 ± 101.2, HNF4A MODY: 93.8 ± 57.0, HNF1A MODY: 170.2 ± 64.5, T2D: 211.2 ± 65.3, P < 0.01). Markedly reduced levels of proinsulin were found in HNF4A MODY compared to T2D and that tended to be so also in HNF1A MODY (HNF4A MODY: 3.7 ± 1.2, HNF1A MODY: 8.3 ± 3.8 vs. T2D: 26.6 ± 14.3). Patients with HNF4A MODY had similar total GLP-1 and GIP responses as controls (GLP-1 AUC: (control: 823.9 ± 703.8, T2D: 556.4 ± 698.2, HNF4A MODY: 1,257.0 ± 999.3, HNF1A MODY: 697.1 ± 818.4) but with a different secretion pattern. The AUC insulin during the test meal was strongly correlated with the GIP secretion (Correlation coefficient 1.0, P < 0.001). No such correlation was seen for insulin and GLP-1. Patients with HNF4A and HNF1A MODY showed an attenuated early phase of insulin secretion similar to T2Ds. AUC insulin during the test meal was strongly correlated with GIP secretion, whereas no such correlation was seen for insulin and GLP-1. Thus, GIP may be a more important factor for insulin secretion than GLP-1 in MODY patients.

Moderate Resolution Imaging Spectroradiometer (MODIS) Overview

USGS Publications Warehouse

,

2008-01-01

The Moderate Resolution Imaging Spectroradiometer (MODIS) is an instrument that collects remotely sensed data used by scientists for monitoring, modeling, and assessing the effects of natural processes and human actions on the Earth's surface. The continual calibration of the MODIS instruments, the refinement of algorithms used to create higher-level products, and the ongoing product validation make MODIS images a valuable time series (2000-present) of geophysical and biophysical land-surface measurements. Carried on two National Aeronautics and Space Administration (NASA) Earth Observing System (EOS) satellites, MODIS acquires morning (EOS-Terra) and afternoon (EOS-Aqua) views almost daily. Terra data acquisitions began in February 2000 and Aqua data acquisitions began in July 2002. Land data are generated only as higher-level products, removing the burden of common types of data processing from the user community. MODIS-based products describing ecological dynamics, radiation budget, and land cover are projected onto a sinusoidal mapping grid and distributed as 10- by 10-degree tiles at 250-, 500-, or 1,000-meter spatial resolution. Some products are also created on a 0.05-degree geographic grid to support climate modeling studies. All MODIS products are distributed in the Hierarchical Data Format-Earth Observing System (HDF-EOS) file format and are available through file transfer protocol (FTP) or on digital video disc (DVD) media. Versions 4 and 5 of MODIS land data products are currently available and represent 'validated' collections defined in stages of accuracy that are based on the number of field sites and time periods for which the products have been validated. Version 5 collections incorporate the longest time series of both Terra and Aqua MODIS data products.

The Drosophila HNF4 nuclear receptor promotes glucose-stimulated insulin secretion and mitochondrial function in adults

PubMed Central

Barry, William E; Thummel, Carl S

2016-01-01

Although mutations in HNF4A were identified as the cause of Maturity Onset Diabetes of the Young 1 (MODY1) two decades ago, the mechanisms by which this nuclear receptor regulates glucose homeostasis remain unclear. Here we report that loss of Drosophila HNF4 recapitulates hallmark symptoms of MODY1, including adult-onset hyperglycemia, glucose intolerance and impaired glucose-stimulated insulin secretion (GSIS). These defects are linked to a role for dHNF4 in promoting mitochondrial function as well as the expression of Hex-C, a homolog of the MODY2 gene Glucokinase. dHNF4 is required in the fat body and insulin-producing cells to maintain glucose homeostasis by supporting a developmental switch toward oxidative phosphorylation and GSIS at the transition to adulthood. These findings establish an animal model for MODY1 and define a developmental reprogramming of metabolism to support the energetic needs of the mature animal. DOI: http://dx.doi.org/10.7554/eLife.11183.001 PMID:27185732

A family with the Arg103Pro mutation in the NEUROD1 gene detected by next-generation sequencing - Clinical characteristics of mutation carriers.

PubMed

Szopa, Magdalena; Ludwig-Galezowska, Agnieszka H; Radkowski, Piotr; Skupien, Jan; Machlowska, Julita; Klupa, Tomasz; Wolkow, Pawel; Borowiec, Maciej; Mlynarski, Wojciech; Malecki, Maciej T

2016-02-01

Until now only a few families with early onset autosomal diabetes due to the NEUROD1 gene mutations have been identified. Moreover, only some of them meet strict MODY (maturity-onset diabetes of the young) criteria. Next-generation sequencing (NGS) provides an opportunity to detect more pathogenic mutations in this gene. Here, we evaluated the segregation of the Arg103Pro mutation in the NEUROD1 gene in a pedigree in which it was detected, and described the clinical characteristics of the mutation carriers. We included 156 diabetic probands of MODY families, among them 52 patients earlier tested for GCK-MODY and/or HNF1A-MODY by Sanger sequencing with negative results. Genetic testing was performed by targeted NGS sequencing using a panel of 28 monogenic diabetes genes. As detected by NGS, one patient had the missense Arg103Pro (CGC/CCC) mutation in the gene NEUROD1 changing the amino-acid structure of the DNA binding domain of this transcription factor. We confirmed this sequence difference by Sanger sequencing. This family had previously been tested with negative results for HNF1A gene mutations. 17 additional members of this family were invited for further testing. We confirmed the presence of the mutation in 11 subjects. Seven adult mutation carriers (all but one) from three generations had been already diagnosed with diabetes. There were 3 individuals with the Arg103Pro mutation diagnosed before the age of 30 years in the family. The range of age of the four unaffected mutation carriers (3 minors and 1 adult) was 3-48 years. Interestingly, one mutation carrier had a history of transient neonatal hypoglycemia, of which the clinical course resembled episodes typical for HNF4A-MODY. We report a family with autosomal dominant diabetes related to a new NEUROD1 mutation, one of very few meeting MODY criteria. The use of the NGS method will facilitate identification of more families with rare forms of MODY. Copyright © 2016 Elsevier Masson SAS. All rights reserved.

Cost-effectiveness of MODY genetic testing: translating genomic advances into practical health applications.

PubMed

Naylor, Rochelle N; John, Priya M; Winn, Aaron N; Carmody, David; Greeley, Siri Atma W; Philipson, Louis H; Bell, Graeme I; Huang, Elbert S

2014-01-01

OBJECTIVE To evaluate the cost-effectiveness of a genetic testing policy for HNF1A-, HNF4A-, and GCK-MODY in a hypothetical cohort of type 2 diabetic patients 25-40 years old with a MODY prevalence of 2%. RESEARCH DESIGN AND METHODS We used a simulation model of type 2 diabetes complications based on UK Prospective Diabetes Study data, modified to account for the natural history of disease by genetic subtype to compare a policy of genetic testing at diabetes diagnosis versus a policy of no testing. Under the screening policy, successful sulfonylurea treatment of HNF1A-MODY and HNF4A-MODY was modeled to produce a glycosylated hemoglobin reduction of -1.5% compared with usual care. GCK-MODY received no therapy. Main outcome measures were costs and quality-adjusted life years (QALYs) based on lifetime risk of complications and treatments, expressed as the incremental cost-effectiveness ratio (ICER) (USD/QALY). RESULTS The testing policy yielded an average gain of 0.012 QALYs and resulted in an ICER of 205,000 USD. Sensitivity analysis showed that if the MODY prevalence was 6%, the ICER would be ~50,000 USD. If MODY prevalence was >30%, the testing policy was cost saving. Reducing genetic testing costs to 700 USD also resulted in an ICER of ~50,000 USD. CONCLUSIONS Our simulated model suggests that a policy of testing for MODY in selected populations is cost-effective for the U.S. based on contemporary ICER thresholds. Higher prevalence of MODY in the tested population or decreased testing costs would enhance cost-effectiveness. Our results make a compelling argument for routine coverage of genetic testing in patients with high clinical suspicion of MODY.

Whole-exome sequencing and high throughput genotyping identified KCNJ11 as the thirteenth MODY gene.

PubMed

Bonnefond, Amélie; Philippe, Julien; Durand, Emmanuelle; Dechaume, Aurélie; Huyvaert, Marlène; Montagne, Louise; Marre, Michel; Balkau, Beverley; Fajardy, Isabelle; Vambergue, Anne; Vatin, Vincent; Delplanque, Jérôme; Le Guilcher, David; De Graeve, Franck; Lecoeur, Cécile; Sand, Olivier; Vaxillaire, Martine; Froguel, Philippe

2012-01-01

Maturity-onset of the young (MODY) is a clinically heterogeneous form of diabetes characterized by an autosomal-dominant mode of inheritance, an onset before the age of 25 years, and a primary defect in the pancreatic beta-cell function. Approximately 30% of MODY families remain genetically unexplained (MODY-X). Here, we aimed to use whole-exome sequencing (WES) in a four-generation MODY-X family to identify a new susceptibility gene for MODY. WES (Agilent-SureSelect capture/Illumina-GAIIx sequencing) was performed in three affected and one non-affected relatives in the MODY-X family. We then performed a high-throughput multiplex genotyping (Illumina-GoldenGate assay) of the putative causal mutations in the whole family and in 406 controls. A linkage analysis was also carried out. By focusing on variants of interest (i.e. gains of stop codon, frameshift, non-synonymous and splice-site variants not reported in dbSNP130) present in the three affected relatives and not present in the control, we found 69 mutations. However, as WES was not uniform between samples, a total of 324 mutations had to be assessed in the whole family and in controls. Only one mutation (p.Glu227Lys in KCNJ11) co-segregated with diabetes in the family (with a LOD-score of 3.68). No KCNJ11 mutation was found in 25 other MODY-X unrelated subjects. Beyond neonatal diabetes mellitus (NDM), KCNJ11 is also a MODY gene ('MODY13'), confirming the wide spectrum of diabetes related phenotypes due to mutations in NDM genes (i.e. KCNJ11, ABCC8 and INS). Therefore, the molecular diagnosis of MODY should include KCNJ11 as affected carriers can be ideally treated with oral sulfonylureas.

Global monitoring of atmospheric properties by the EOS MODIS

NASA Technical Reports Server (NTRS)

King, Michael D.

1993-01-01

The Moderate Resolution Imaging Spectroradiometer (MODIS) being developed for the Earth Observing System (EOS) is well suited to the global monitoring of atmospheric properties from space. Among the atmospheric properties to be examined using MODIS observations, clouds are especially important, since they are a strong modulator of the shortwave and longwave components of the earth's radiation budget. A knowledge of cloud properties (such as optical thickness and effective radius) and their variation in space and time, which are our task objectives, is also crucial to studies of global climate change. In addition, with the use of related airborne instrumentation, such as the Cloud Absorption Radiometer (CAR) and MODIS Airborne Simulator (MAS) in intensive field experiments (both national and international campaigns, see below), various types of surface and cloud properties can be derived from the measured bidirectional reflectances. These missions have provided valuable experimental data to determine the capability of narrow bandpass channels in examining the Earth's atmosphere and to aid in defining algorithms and building an understanding of the ability of MODIS to remotely sense atmospheric conditions for assessing global change. Therefore, the primary task objective is to extend and expand our algorithm for retrieving the optical thickness and effective radius of clouds from radiation measurements to be obtained from MODIS. The secondary objective is to obtain an enhanced knowledge of surface angular and spectral properties that can be inferred from airborne directional radiance measurements.

Clinical and molecular characterization of a novel INS mutation identified in patients with MODY phenotype.

PubMed

Piccini, Barbara; Artuso, Rosangela; Lenzi, Lorenzo; Guasti, Monica; Braccesi, Giulia; Barni, Federica; Casalini, Emilio; Giglio, Sabrina; Toni, Sonia

2016-11-01

Correct diagnosis of Maturity-Onset Diabetes of the Young (MODY) is based on genetic tests requiring an appropriate subject selection by clinicians. Mutations in the insulin (INS) gene rarely occur in patients with MODY. This study is aimed at determining the genetic background and clinical phenotype in patients with suspected MODY. 34 patients with suspected MODY, negative for mutations in the GCK, HNF1α, HNF4α, HNF1β and PDX1 genes, were screened by next generation sequencing (NGS). A heterozygous INS mutation was identified in 4 members of the same family. First genetic tests performed identified two heterozygous silent nucleotide substitutions in MODY3/HNF1α gene. An ineffective attempt to suspend insulin therapy, administering repaglinide and sulphonylureas, was made. DNA was re-sequenced by NGS investigating a set of 102 genes. Genes implicated in the pathway of pancreatic β-cells, candidate genes for type 2 diabetes mellitus and genes causative of diabetes in mice were selected. A novel heterozygous variant in human preproinsulin INS gene (c.125T > C) was found in the affected family members. The new INS mutation broadens the spectrum of possible INS phenotypes. Screening for INS mutations is warranted not only in neonatal diabetes but also in MODYx patients and in selected patients with type 1 diabetes mellitus negative for autoantibodies. Subjects with complex diseases without a specific phenotype should be studied by NGS because Sanger sequencing is ineffective and time consuming in detecting rare variants. Copyright © 2016 Elsevier Masson SAS. All rights reserved.

Molecular diagnosis of maturity-onset diabetes of the young (MODY) in Turkish children by using targeted next-generation sequencing.

PubMed

Anık, Ahmet; Çatlı, Gönül; Abacı, Ayhan; Sarı, Erkan; Yeşilkaya, Ediz; Korkmaz, Hüseyin Anıl; Demir, Korcan; Altıncık, Ayça; Tuhan, Hale Ünver; Kızıldağ, Sefa; Özkan, Behzat; Ceylaner, Serdar; Böber, Ece

2015-11-01

To perform molecular analysis of pediatric maturity onset diabetes of the young (MODY) patients by next-generation sequencing, which enables simultaneous analysis of multiple genes in a single test, to determine the genetic etiology of a group of Turkish children clinically diagnosed as MODY, and to assess genotype-phenotype relationship. Forty-two children diagnosed with MODY and their parents were enrolled in the study. Clinical and laboratory characteristics of the patients at the time of diagnosis were obtained from hospital records. Molecular analyses of GCK, HNF1A, HNF4A, HNF1B, PDX1, NEUROD1, KLF11, CEL, PAX4, INS, and BLK genes were performed on genomic DNA by using next-generation sequencing. Pathogenicity for novel mutations was assessed by bioinformatics prediction software programs and segregation analyses. A mutation in MODY genes was identified in 12 (29%) of the cases. GCK mutations were detected in eight cases, and HNF1B, HNF1A, PDX1, and BLK mutations in the others. We identified five novel missense mutations - three in GCK (p.Val338Met, p.Cys252Ser, and p.Val86Ala), one in HNF1A (p.Cys241Ter), and one in PDX1 (p.Gly55Asp), which we believe to be pathogenic. The results of this study showed that mutations in the GCK gene are the leading cause of MODY in our population. Moreover, genetic diagnosis could be made in 29% of Turkish patients, and five novel mutations were identified.

The glucokinase mutation p.T206P is common among MODY patients of Jewish Ashkenazi descent.

PubMed

Gozlan, Yael; Tenenbaum, Ariel; Shalitin, Shlomit; Lebenthal, Yael; Oron, Tal; Cohen, Ohad; Phillip, Moshe; Gat-Yablonski, Galia

2012-09-01

Maturity-onset diabetes of the young (MODY) is characterized by an autosomal dominant mode of inheritance; a primary defect in insulin secretion with non-ketotic hyperglycemia, age of onset under 25 yr; and lack of autoantibodies. Heterozygous mutations in glucokinase (GCK) are associated with mild fasting hyperglycemia and gestational diabetes mellitus while homozygous or compound heterozygous GCK mutations result in permanent neonatal diabetes mellitus. Given that both the Israeli-Arabic and the various Israeli-Jewish communities tend to maintain ethnic seclusion, we speculated that it would be possible to identify a relatively narrow spectrum of mutations in the Israeli population. To characterize the genetic basis of GCK-MODY in the different ethnic groups of the Israeli population. Patients with clinically identified GCK-MODY and their first degree family members. Molecular analysis of GCK was performed on genomic DNA using polymerase chain reaction, denaturing gradient gel electrophoresis (DGGE), and sequencing. Bioinformatic model was preformed using the NEST program. Mutations in GCK were identified in 25 families and were all family-specific, except c.616A>C. p.T206P. This mutation was identified in six unrelated families, all patients from a Jewish-Ashkenazi descent, thus indicating an ethno-genetic correlation. A simple, fast, and relatively cheap DGGE/restriction-digestion assay was developed. The high incidence of the mutant allele in GCK-MODY patients of Jewish-Ashkenazi descent suggests a founder effect. We propose that clinically identified GCK-MODY patients of Jewish-Ashkenazi origin be first tested for this mutation. © 2011 John Wiley & Sons A/S.

Prevalence of Retinopathy in Adult Patients with GCK-MODY and HNF1A-MODY.

PubMed

Szopa, M; Wolkow, J; Matejko, B; Skupien, J; Klupa, T; Wybrańska, I; Trznadel-Morawska, I; Kiec-Wilk, B; Borowiec, M; Malecki, M T

2015-10-01

We aimed to assess the prevalence of diabetic retinopathy (DR) in adult patients with GCK-MODY and HNF1A-MODY in Poland and to identify biochemical and clinical risk factors associated with its occurrence.We examined 74 GCK mutation carriers, 51 with diabetes and 23 with prediabetes, respectively, and 63 patients with HNF1A-MODY. Retinal photographs, 12 for each patient, were done by a fundus camera. Signs of DR were graded according to the DR disease severity scale. Statistical tests were performed to assess differences between the groups and logistic regression was done for the association with DR.The mean age at examination was 34.5±14.8 and 39.9±15.2 in the GCK-MODY and HNF1A-MODY groups, respectively. Mild nonproliferative DR (NPDR) was found in one patient with the GCK mutation and likely concomitant type 1 diabetes, whereas DR was diagnosed in 15 HNF1A-MODY patients: 9 with proliferative, 3 with moderate NPDR and 2 with mild NPDR. In univariate logistic regression analysis in the HNF1A-MODY group, significant results were found for diabetes duration, fasting glycemia, HbA1c, arterial hypertension, age at the examination, and eGFR. The strongest independent predictors of DR in HNF1A-MODY were markers of glucose control: HbA1c (OR: 2.05, CL%95: 1.2-3.83, p=0.01) and glucose (p=0.006, OR: 1.40, CL%95: 1.12-1.83) analyzed in 2 separated models. Additionally, arterial hypertension independently predicted DR (OR: 9.06, CL%95: 1.19-98.99, p=0.04) in the model with HbA1c as glycaemic control marker.In conclusion, DR of any degree was not present in our GCK-MODY group, while in spite of young age almost every fourth subject with HNF1A-MODY showed signs of this complication. © Georg Thieme Verlag KG Stuttgart · New York.

[Humoral response markers in GCK MODY].

PubMed

Skała-Zamorowska, Eliza; Deja, Grażyna; Borowiec, Maciej; Fendler, Wojciech; Małachowska, Beata; Kamińska, Halla; Wyka, Krystyna; Młynarski, Wojciech; Jarosz-Chobot, Przemysława

2016-01-01

The prevalence of antibodies to pancreatic islets in monogenic diabetes remains unknown and the incidence estimation is difficult as the occurrence of autoantibodies in patient is one of the well-known exclusion criteria for further genetic diagnostics. They has been found not only among patients with type 1 diabetes, but also in other types of diabetes: Type 2 diabetes, Latent Autoimmune Diabetes in Adults (LADA) (16) and monogenic diabetes (MD). Immunological characteristic of GCK MODY patients. The study group included families of 27 adolescent patients with GCK MODY (39 parents and 19 siblings) monitored in the Department of Pediatrics, Endocrinology and Diabetes and in the Diabetes Clinic of John Paul II Upper Silesian Child Health Centre in Katowice in the years 2007-2012. All patients and family members with GCK MODY underwent a blood sample drawing for immunological (classic humoral response markers: ICA, GAD, IA-2, IAA) and biochemical diagnostics. Pediatric, diabetes and family medical history was collected from the subjects and parents. Immunological diagnostics was performed in all patients except 1 (96.3%). Immunological diagnostics included 17 (89.5%) parents and 7 (87.5%) siblings with diagnosed GCK MODY. 8 (30.8%) adolescent patients with GCK MODY, 3 subjects (17.64%) among parents (with GCK MODY), as well as 2 subjects (28.57%) among siblings (with GCK MODY) showed a positive antibodies screen. The results of our study in children with GCK MODY and their family members suggest that the occurrence of classic antibodies directed against pancreatic islets antigens is fairly common in patients with GCK MODY. Despite various observations and many legitimate discussions, it is difficult to clarify the pathogenesis of the occurrence of autoantibodies in monogenic diabetes. © Polish Society for Pediatric Endocrinology and Diabetology.

A modified Mediterranean dietary intervention for adults with major depression: Dietary protocol and feasibility data from the SMILES trial.

PubMed

Opie, Rachelle S; O'Neil, Adrienne; Jacka, Felice N; Pizzinga, Josephine; Itsiopoulos, Catherine

2017-04-19

The SMILES trial was the first randomized controlled trial (RCT) explicitly designed to evaluate a dietary intervention, conducted by qualified dietitians, for reducing depressive symptomatology in adults with clinical depression. Here we detail the development of the prescribed diet (modified Mediterranean diet (ModiMedDiet)) for individuals with major depressive disorders (MDDs) that was designed specifically for the SMILES trial. We also present data demonstrating the extent to which this intervention achieved improvements in diet quality. The ModiMedDiet was designed using a combination of existing dietary guidelines and scientific evidence from the emerging field of nutritional psychiatric epidemiology. Sixty-seven community dwelling individuals (Melbourne, Australia) aged 18 years or over, with current poor quality diets, and MDDs were enrolled into the SMILES trial. A retention rate of 93.9 and 73.5% was observed for the dietary intervention and social support control group, respectively. The dietary intervention (ModiMedDiet) consisted of seven individual nutrition counselling sessions delivered by a qualified dietitian. The control condition comprised a social support protocol matched to the same visit schedule and length. This manuscript details the first prescriptive individualized dietary intervention delivered by dietitians for adults with major depression. Significant improvements in dietary quality were observed among individuals randomized to the ModiMedDiet group. These dietary improvements were also found to be associated with changes in depressive symptoms. The ModiMedDiet, a novel and individually tailored intervention designed specifically for adults with major depression, can be effectively implemented in clinical practice to manage this highly prevalent and debilitating condition. Australia and New Zealand Clinical Trials Register (ANZCTR): ACTRN12612000251820. Registered 29 February 2012.

Mutations in HNF1A Result in Marked Alterations of Plasma Glycan Profile

PubMed Central

Thanabalasingham, Gaya; Huffman, Jennifer E.; Kattla, Jayesh J.; Novokmet, Mislav; Rudan, Igor; Gloyn, Anna L.; Hayward, Caroline; Adamczyk, Barbara; Reynolds, Rebecca M.; Muzinic, Ana; Hassanali, Neelam; Pucic, Maja; Bennett, Amanda J.; Essafi, Abdelkader; Polasek, Ozren; Mughal, Saima A.; Redzic, Irma; Primorac, Dragan; Zgaga, Lina; Kolcic, Ivana; Hansen, Torben; Gasperikova, Daniela; Tjora, Erling; Strachan, Mark W.J.; Nielsen, Trine; Stanik, Juraj; Klimes, Iwar; Pedersen, Oluf B.; Njølstad, Pål R.; Wild, Sarah H.; Gyllensten, Ulf; Gornik, Olga; Wilson, James F.; Hastie, Nicholas D.; Campbell, Harry; McCarthy, Mark I.; Rudd, Pauline M.; Owen, Katharine R.; Lauc, Gordan; Wright, Alan F.

2013-01-01

A recent genome-wide association study identified hepatocyte nuclear factor 1-α (HNF1A) as a key regulator of fucosylation. We hypothesized that loss-of-function HNF1A mutations causal for maturity-onset diabetes of the young (MODY) would display altered fucosylation of N-linked glycans on plasma proteins and that glycan biomarkers could improve the efficiency of a diagnosis of HNF1A-MODY. In a pilot comparison of 33 subjects with HNF1A-MODY and 41 subjects with type 2 diabetes, 15 of 29 glycan measurements differed between the two groups. The DG9-glycan index, which is the ratio of fucosylated to nonfucosylated triantennary glycans, provided optimum discrimination in the pilot study and was examined further among additional subjects with HNF1A-MODY (n = 188), glucokinase (GCK)-MODY (n = 118), hepatocyte nuclear factor 4-α (HNF4A)-MODY (n = 40), type 1 diabetes (n = 98), type 2 diabetes (n = 167), and nondiabetic controls (n = 98). The DG9-glycan index was markedly lower in HNF1A-MODY than in controls or other diabetes subtypes, offered good discrimination between HNF1A-MODY and both type 1 and type 2 diabetes (C statistic ≥0.90), and enabled us to detect three previously undetected HNF1A mutations in patients with diabetes. In conclusion, glycan profiles are altered substantially in HNF1A-MODY, and the DG9-glycan index has potential clinical value as a diagnostic biomarker of HNF1A dysfunction. PMID:23274891

An analysis of the sequence of the BAD gene among patients with maturity-onset diabetes of the young (MODY).

PubMed

Antosik, Karolina; Gnyś, Piotr; Jarosz-Chobot, Przemysława; Myśliwiec, Małgorzata; Szadkowska, Agnieszka; Małecki, Maciej; Młynarski, Wojciech; Borowiec, Maciej

2017-01-01

Monogenic diabetes is a rare disease caused by single gene mutations. Maturity onset diabetes of the young (MODY) is one of the major forms of monogenic diabetes recognised in the paediatric population. To date, 13 genes have been related to MODY development. The aim of the study was to analyse the sequence of the BCL2-associated agonist of cell death (BAD) gene in patients with clinical suspicion of GCK-MODY, but who were negative for glucokinase (GCK) gene mutations. A group of 122 diabetic patients were recruited from the "Polish Registry for Paediatric and Adolescent Diabetes - nationwide genetic screening for monogenic diabetes" project. The molecular testing was performed by Sanger sequencing. A total of 10 sequence variants of the BAD gene were identified in 122 analysed diabetic patients. Among the analysed patients suspected of MODY, one possible pathogenic variant was identified in one patient; however, further confirmation is required for a certain identification.

Circulating CD36 is reduced in HNF1A-MODY carriers.

PubMed

Bacon, Siobhan; Kyithar, Ma P; Schmid, Jasmin; Costa Pozza, Andre; Handberg, Aase; Byrne, Maria M

2013-01-01

Premature atherosclerosis is a significant cause of morbidity and mortality in type 2 diabetes mellitus. Maturity onset diabetes of the young (MODY) accounts for approximately 2% of all diabetes, with mutations in the transcription factor; hepatocyte nuclear factor 1 alpha (HNF1A) accounting for the majority of MODY cases. There is somewhat limited data available on the prevalence of macrovascular disease in HNF1A-MODY carriers with diabetes. Marked insulin resistance and the associated dyslipidaemia are not clinical features of HNF1A-MODY carriers. The scavenger protein CD36 has been shown to play a substantial role in the pathogenesis of atherosclerosis, largely through its interaction with oxidised LDL. Higher levels of monocyte CD36 and plasma CD36(sCD36) are seen to cluster with insulin resistance and diabetes. The aim of this study was to determine levels of sCD36 in participants with HNF1A-MODY diabetes and to compare them with unaffected normoglycaemic family members and participants with type 2 diabetes mellitus. We recruited 37 participants with HNF1A-MODY diabetes and compared levels of sCD36 with BMI-matched participants with type 2 diabetes mellitus and normoglycaemic HNF1A-MODY negative family controls. Levels of sCD36 were correlated with phenotypic and biochemical parameters. HNF1A-MODY participants were lean, normotensive, with higher HDL and lower triglyceride levels when compared to controls and participants with type 2 diabetes mellitus. sCD36 was also significantly lower in HNF1A-MODY participants when compared to both the normoglycaemic family controls and to lean participants with type 2 diabetes mellitus. In conclusion, sCD36 is significantly lower in lean participants with HNF1A-MODY diabetes when compared to weight-matched normoglycaemic familial HNF1A-MODY negative controls and to lean participants with type 2 diabetes mellitus. Lower levels of this pro-atherogenic marker may result from the higher HDL component in the lipid profile of HNF1A-MODY participants.

Comparison of Glomerular Filtration Rate Estimation from Serum Creatinine and Cystatin C in HNF1A-MODY and Other Types of Diabetes.

PubMed

Szopa, Magdalena; Kapusta, Maria; Matejko, Bartlomiej; Klupa, Tomasz; Koblik, Teresa; Kiec-Wilk, Beata; Borowiec, Maciej; Malecki, Maciej T

2015-01-01

We previously showed that in HNF1A-MODY the cystatin C-based glomerular filtration rate (GFR) estimate is higher than the creatinine-based estimate. Currently, we aimed to replicate this finding and verify its clinical significance. The study included 72 patients with HNF1A-MODY, 72 with GCK-MODY, 53 with type 1 diabetes (T1DM), 70 with type 2 diabetes (T2DM), and 65 controls. Serum creatinine and cystatin C levels were measured. GFR was calculated from creatinine and cystatin C using the CKD-EPI creatinine equation (eGRF-cr) and CKD-EPI cystatin C equation (eGFR-cys), respectively. Cystatin C levels were lower (p < 0.001) in the control (0.70 ± 0.13 mg/L), HNF1A (0.75 ± 0.21), and GCK (0.72 ± 0.16 mg/L) groups in comparison to those with either T1DM (0.87 ± 0.15 mg/L) or T2DM (0.9 ± 0.23 mg/L). Moreover, eGFR-cys was higher than eGRF-cr in HNF1A-MODY, GCK-MODY, and the controls (p = 0.004; p = 0.003; p < 0.0001). This corresponded to 8.9 mL/min/1.73 m2, 9.7 mL/min/1.73 m2, and 16.9 mL/min/1.73 m2 of difference. Additionally, T1DM patients had higher eGFR-cr than eGFR-cys (11.6 mL/min/1.73 m(2); p = 0.0004); no difference occurred in T2DM (p = 0.91). We confirmed that eGFR-cys values in HNF1A-MODY patients are higher compared to eGFR-cr. Some other differences were also described in diabetic groups. However, none of them appears to be clinically relevant.

Maturity-onset diabetes of the young (MODY) in Brazil: Establishment of a national registry and appraisal of available genetic and clinical data.

PubMed

Giuffrida, Fernando M A; Moises, Regina S; Weinert, Leticia S; Calliari, Luis E; Manna, Thais Della; Dotto, Renata P; Franco, Luciana F; Caetano, Lilian A; Teles, Milena G; Lima, Renata Andrade; Alves, Crésio; Dib, Sergio A; Silveiro, Sandra P; Dias-da-Silva, Magnus R; Reis, Andre F

2017-01-01

Maturity-Onset Diabetes of the Young (MODY) comprises a heterogeneous group of monogenic forms of diabetes caused by mutations in at least 14 genes, but mostly by mutations in Glucokinase (GCK) and hepatocyte nuclear factor-1 homeobox A (HNF1A). This study aims to establish a national registry of MODY cases in Brazilian patients, assessing published and unpublished data. 311 patients with clinical characteristics of MODY were analyzed, with unpublished data on 298 individuals described in 12 previous publications and 13 newly described cases in this report. 72 individuals had GCK mutations, 9 described in Brazilian individuals for the first time. One previously unpublished novel GCK mutation, Gly178Ala, was found in one family. 31 individuals had HNF1A mutations, 2 described for the first time in Brazilian individuals. Comparisons of GCK probands vs HNF1A: age 16±11 vs 35±20years; age at diagnosis 11±8 vs 21±7years; BMI 19±6 vs 25±6kg/m 2 ; sulfonylurea users 5 vs 83%; insulin users 5 vs 17%; presence of arterial hypertension 0 vs. 33%, all p<0.05. No differences were observed in lipids and C-peptide. Most MODY cases in Brazil are due to GCK mutations. In agreement with other studied populations, novel mutations are common. Only 14% of patients with familial diabetes carry a HNF1A mutation. Diagnosis of other rare forms of MODY is still a challenge in Brazilian population, as well as adequate strategies to screen individuals for molecular diagnosis. Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.

A single dose of dapagliflozin, an SGLT-2 inhibitor, induces higher glycosuria in GCK- and HNF1A-MODY than in type 2 diabetes mellitus.

PubMed

Hohendorff, J; Szopa, M; Skupien, J; Kapusta, M; Zapala, B; Platek, T; Mrozinska, S; Parpan, T; Glodzik, W; Ludwig-Galezowska, A; Kiec-Wilk, B; Klupa, T; Malecki, M T

2017-08-01

SGLT2 inhibitors are a new class of oral hypoglycemic agents used in type 2 diabetes (T2DM). Their effectiveness in maturity onset diabetes of the young (MODY) is unknown. We aimed to assess the response to a single dose of 10 mg dapagliflozin in patients with Hepatocyte Nuclear Factor 1 Alpha (HNF1A)-MODY, Glucokinase (GCK)-MODY, and type 2 diabetes. We examined 14 HNF1A-MODY, 19 GCK-MODY, and 12 type 2 diabetes patients. All studied individuals received a single morning dose of 10 mg of dapagliflozin added to their current therapy of diabetes. To assess the response to dapagliflozin we analyzed change in urinary glucose to creatinine ratio and serum 1,5-Anhydroglucitol (1,5-AG) level. There were only four patients with positive urine glucose before dapagliflozin administration (one with HNF1A-MODY, two with GCK-MODY, and one with T2DM), whereas after SGLT-2 inhibitor use, glycosuria occurred in all studied participants. Considerable changes in mean glucose to creatinine ratio after dapagliflozin administration were observed in all three groups (20.51 ± 12.08, 23.19 ± 8.10, and 9.84 ± 6.68 mmol/mmol for HNF1A-MODY, GCK-MODY, and T2DM, respectively, p < 0.001 for all comparisons). Post-hoc analysis revealed significant differences in mean glucose to creatinine ratio change between type 2 diabetes and each monogenic diabetes in response to dapagliflozin (p = 0.02, p = 0.003 for HNF1-A and GCK MODY, respectively), but not between the two MODY forms (p = 0.7231). Significant change in serum 1,5-AG was noticed only in T2DM and it was -6.57 ± 7.34 mg/ml (p = 0.04). A single dose of dapagliflozin, an SGLT-2 inhibitor, induces higher glycosuria in GCK- and HNF1A-MODY than in T2DM. Whether flozins are a valid therapeutic option in these forms of MODY requires long-term clinical studies.

Pre-Launch Tasks Proposed in our Contract of December 1991

NASA Technical Reports Server (NTRS)

1998-01-01

We propose, during the pre-EOS phase to: (1) develop, with other MODIS Team Members, a means of discriminating different major biome types with NDVI and other AVHRR-based data; (2) develop a simple ecosystem process model for each of these biomes, BIOME-BGC; (3) relate the seasonal trend of weekly composite NDVI to vegetation phenology and temperature limits to develop a satellite defined growing season for vegetation; and (4) define physiologically based energy to mass conversion factors for carbon and water for each biome. Our final core at-launch product will be simplified, completely satellite driven biome specific models for net primary production. We will build these biome specific satellite driven algorithms using a family of simple ecosystem process models as calibration models, collectively called BIOME-BGC, and establish coordination with an existing network of ecological study sites in order to test and validate these products. Field datasets will then be available for both BIOME-BGC development and testing, use for algorithm developments of other MODIS Team Members, and ultimately be our first test point for MODIS land vegetation products upon launch. We will use field sites from the National Science Foundation Long-Term Ecological Research network, and develop Glacier National Park as a major site for intensive validation.

Pre-Launch Tasks Proposed in our Contract of December 1991

NASA Technical Reports Server (NTRS)

Running, Steven W.; Nemani, Ramakrishna R.; Glassy, Joseph

1997-01-01

We propose, during the pre-EOS phase to: (1) develop, with other MODIS Team Members, a means of discriminating different major biome types with NDVI and other AVHRR-based data. (2) develop a simple ecosystem process model for each of these biomes, BIOME-BGC (3) relate the seasonal trend of weekly composite NDVI to vegetation phenology and temperature limits to develop a satellite defined growing season for vegetation; and (4) define physiologically based energy to mass conversion factors for carbon and water for each biome. Our final core at-launch product will be simplified, completely satellite driven biome specific models for net primary production. We will build these biome specific satellite driven algorithms using a family of simple ecosystem process models as calibration models, collectively called BIOME-BGC, and establish coordination with an existing network of ecological study sites in order to test and validate these products. Field datasets will then be available for both BIOME-BGC development and testing, use for algorithm developments of other MODIS Team Members, and ultimately be our first test point for MODIS land vegetation products upon launch. We will use field sites from the National Science Foundation Long-Term Ecological Research network, and develop Glacier National Park as a major site for intensive validation.

Flooding in Central China

NASA Technical Reports Server (NTRS)

2002-01-01

During the summer of 2002, frequent, heavy rains gave rise to floods and landslides throughout China that have killed over 1,000 people and affected millions. This false-color image of the western Yangtze River and Dongting Lake in central China was acquired on August 21, 2002, by the Moderate-resolution Imaging Spectroradiometer (MODIS), flying aboard NASA's Terra spacecraft. (right) The latest flooding crisis in China centers on Dingtong Lake in the center of the image. Heavy rains have caused it to swell over its banks and swamp lakefront towns in the province of Hunan. As of August 23, 2002, more than 250,000 people have been evacuated, and over one million people have been brought in to fortify the dikes around the lake. Normally the lake would appear much smaller and more defined in the MODIS image. Credit: Image courtesy Jacques Descloitres, MODIS Land Rapid Response Team at NASA GSFC.

Half-Life of Sulfonylureas in HNF1A and HNF4A Human MODY Patients is not Prolonged as Suggested by the Mouse Hnf1a(-/-) Model.

PubMed

Urbanova, Jana; Andel, Michal; Potockova, Jana; Klima, Josef; Macek, Jan; Ptacek, Pavel; Mat'oska, Vaclav; Kumstyrova, Tereza; Heneberg, Petr

2015-01-01

Sulfonylurea derivatives are widely used for clinical treatment of human subjects with Maturity Onset Diabetes of the Young (MODY) caused by mutations in HNF-1α or HNF-4α despite the mechanism leading to their hypersensitivity is incompletely understood. In Hnf1a(-/-) mice, serum concentrations and half-life of sulfonylurea derivatives are strongly increased. We thus hypothesized that reduced sulfonylurea derivatives clearance stands behind their therapeutic potential in human HNF1A/HNF4A MODY subjects. Single doses of 3 mg glipizide and 5 mg glibenclamide/glyburide were administered sequentially to seven HNF1A/HNF4A MODY subjects and six control individuals matched for their age, BMI and CYP2C9 genotype. Pharmacokinetic (plasma concentration levels, Cmax, tmax, t1/2, AUC) and pharmacodynamic parameters (glycemia, C-peptide and insulin plasma levels) were followed for 24 hours after drug administration. We provide the first evidence on the pharmacokinetics and pharmacodynamics of sulfonylurea derivatives in human MODY subjects. The half-life of glipizide did not change, and reached 3.8±0.7 and 3.7±1.8 h in the MODY and control subjects, respectively. The half-life of glibenclamide was increased only in some MODY subjects (t1/2 9.5±6.7 and 5.0±1.4 h, respectively). Importantly, the intra- individual responses of MODY (but control) subjects to glipizide and glibenclamide treatment were highly correlated. With regards to pharmacodynamics, we observed a differential response of control but not MODY subjects to the doses of glipizide and glibenclamide applied. We rejected the hypothesis that all human MODY-associated mutations in HNF1A / HNF4A induce changes in the pharmacokinetics of sulfonylureas in humans analogically to the Hnf1a(-/-) mouse model.

Glucokinase MODY and implications for treatment goals of common forms of diabetes.

PubMed

Ajjan, Ramzi A; Owen, Katharine R

2014-12-01

Treatment goals in diabetes concentrate on reducing the risk of vascular complications, largely through setting targets for glycated haemoglobin (HbA1c). These targets are based on epidemiological studies of complication development, but so far have not adequately addressed the adverse effects associated with lowering HbA1c towards the normal range. Glucokinase (GCK) mutations cause a monogenic form of hyperglycaemia (GCK-MODY) characterised by fasting hyperglycaemia with low postprandial glucose excursions and a marginally elevated HbA1c. Minimal levels of vascular complications (comparable with nondiabetic individuals) are observed in GCK-MODY, leading to the hypothesis that GCK-MODY may represent a useful paradigm for assessing treatment goals in all forms of diabetes. In this review, we discuss the evidence behind this concept, suggest ways of translating this hypothesis into clinical practice and address some of the caveats of such an approach.

Genetic counseling in monogenic diabetes GCK MODY.

PubMed

Skała-Zamorowska, Eliza; Deja, Grażyna; Borowiec, Maciej; Fendler, Wojciech; Małachowska, Beata; Kamińska, Halla; Młynarski, Wojciech; Jarosz-Chobot, Przemysława

2016-01-01

Genetic testing in families with monogenic GCK MODY has predictive, diagnostic, and preventive utility. Predictive tests relate to people who have no features of the disorder themselves at the time of testing. Diagnostic tests relate to family members who have been previously diagnosed with diabetes mellitus or glucose metabolism disturbances. The preventive value of genetic testing for families is to raise awareness of the circumstances leading to glucose metabolism disorders. The detection of mutation carriers among family members of patients with GCK MODY and the determination of the clinical significance of the genetic test result. The study group included 27 families of adolescent patients with GCK MODY (39 (75%) of parents and 19 (73.08%) of siblings) monitored in the Department of Pediatrics, Endocrinology and Diabetes and in the Diabetes Clinic of John Paul II Upper Silesian Child Health Centre in Katowice in the years 2007-2012. Subjects underwent a blood sample drawing for genetic and biochemical testing. Through the genetic diagnostics we diagnosed GCK MODY in 14 (63.64%) mothers, 6 (35.29%) fathers and in 7 (36,84%) siblings. Genetic testing has contributed to the detection of 7 (26.92%) asymptomatic carriers of GCK gene mutation among parents and 3 (15,79%) asymptomatic carriers among siblings declaring no carbohydrate metabolism disturbances (before genetic testing there were no indications suggesting carbohydrate metabolism disturbances; OGTT were performed after positive genetic testing). Each case of mutation detection, which is the cause of monogenic diabetes in a patient, justifies the genetic testing in other members of his/her family. Awareness of the genetic status may allow sick family member to confirm the diagnosis, while asymptomatic mutation carriers could benefit from an early clinical observation. Consequently, in each case it gives an opportunity to take diagnostic and therapeutic measures in accordance with the current state of knowledge. © Polish Society for Pediatric Endocrinology and Diabetology.

A three-step programmed method for the identification of causative gene mutations of maturity onset diabetes of the young (MODY).

PubMed

Li, Qian; Cao, Xi; Qiu, Hai-Yan; Lu, Jing; Gao, Rui; Liu, Chao; Yuan, Ming-Xia; Yang, Guang-Ran; Yang, Jin-Kui

2016-08-22

To establish a three-step programmed method to find gene mutations related to maturity onset diabetes of the young (MODY). Target region capture and next-generation sequencing (NGS) were performed using customized oligonucleotide probes designed to capture suspected genes for MODY in 11 probands with clinically diagnosed MODY. The suspected associations of certain genes with MODY were then confirmed by Sanger sequencing in the probands and their family members. Finally, to validate variants of one of the genes of interest (glucokinase, GCK) as pathogenic mutations, protein function editing by the variant genes was assessed. In the target region capture and NGS phase, a total of nine variants of seven genes (GCK, WFS1, SLC19A2, SH2B1, SERPINB4, RFX6, and GATA6) were identified in eight probands. Two heterozygous GCK mutations located on the same allele (p.Leu77Arg and p.Val101Met) were identified in a MODY family. Sanger sequencing was used to confirm the variants identified by NGS to be present in probands and their diabetic family members, but not in non-diabetic family members. Finally, enzyme kinetic and thermal stability analyses revealed that the p.Leu77Arg mutation or the p.Leu77Arg mutation in combination with the p.Val101Met mutation inactivates GCK function and stability, while mutation of p.Val101Met alone does not. The p.Leu77Arg but not p.Val101Met GCK mutation is therefore considered a pathogenic mutation associated with MODY. Genetic screening coupled with gene-editing protein function testing is an effective and reliable method by which causative gene mutations of MODY can be identified. Copyright © 2016 Elsevier B.V. All rights reserved.

Type 2 diabetes mellitus in children and adolescents is still a rare disease in Germany: a population-based assessment of the prevalence of type 2 diabetes and MODY in patients aged 0-20 years.

PubMed

Neu, Andreas; Feldhahn, Lutz; Ehehalt, Stefan; Hub, Regine; Ranke, Michael B

2009-11-01

To assess the prevalence of type 2 diabetes mellitus (T2DM) and maturity onset diabetes of the young (MODY) in children and adolescents aged 0-20 yr in Baden-Württemberg (BW), Germany, and to compare our results with those from other European countries. Our study involved every children's hospital (n = 31), each diabetologist in private practice (n = 122), and every internal medicine unit (n = 164) in BW. A written questionnaire and a telephone survey were used to identify children with T2DM and MODY who had been examined at any of these institutions between 2004 and 2005. Population data were drawn from the national census of 1987 and the subsequent annual updates. The prevalence of T2DM for the age range from 0 to 20 yr is 2.30/100 000, whereas the prevalence of MODY in the same age range is 2.39/100 000. The median age of patients with T2DM was 15.8 yr, and 13.9 yr for MODY patients. The majority of patients with either T2DM or MODY were treated in children's hospitals and by consultant diabetologists. A molecular genetic analysis was done to substantiate the clinical diagnosis in less than half of the recruits (14.3% of T2DM and 44.8% of MODY patients). The prevalence of T2DM and MODY is considerably lower than the prevalence of type 1 diabetes. Type 2 diabetes thus continues to be a rare disease in children and adolescents in Germany, as is also the case in other European countries.

Apolipoprotein M can discriminate HNF1A-MODY from Type 1 diabetes.

PubMed

Mughal, S A; Park, R; Nowak, N; Gloyn, A L; Karpe, F; Matile, H; Malecki, M T; McCarthy, M I; Stoffel, M; Owen, K R

2013-02-01

Missed diagnosis of maturity-onset diabetes of the young (MODY) has led to an interest in biomarkers that enable efficient prioritization of patients for definitive molecular testing. Apolipoprotein M (apoM) was suggested as a biomarker for hepatocyte nuclear factor 1 alpha (HNF1A)-MODY because of its reduced expression in Hnf1a(-/-) mice. However, subsequent human studies examining apoM as a biomarker have yielded conflicting results. We aimed to evaluate apoM as a biomarker for HNF1A-MODY using a highly specific and sensitive ELISA. ApoM concentration was measured in subjects with HNF1A-MODY (n = 69), Type 1 diabetes (n = 50), Type 2 diabetes (n = 120) and healthy control subjects (n = 100). The discriminative accuracy of apoM and of the apoM/HDL ratio for diabetes aetiology was evaluated. Mean (standard deviation) serum apoM concentration (μmol/l) was significantly lower for subjects with HNF1A-MODY [0.86 (0.29)], than for those with Type 1 diabetes [1.37 (0.26), P = 3.1 × 10(-18) ) and control subjects [1.34 (0.22), P = 7.2 × 10(-19) ). There was no significant difference in apoM concentration between subjects with HNF1A-MODY and Type 2 diabetes [0.89 (0.28), P = 0.13]. The C-statistic measure of discriminative accuracy for apoM was 0.91 for HNF1A-MODY vs. Type 1 diabetes, indicating high discriminative accuracy. The apoM/HDL ratio was significantly lower in HNF1A-MODY than other study groups. However, this ratio did not perform well in discriminating HNF1A-MODY from either Type 1 diabetes (C-statistic = 0.79) or Type 2 diabetes (C-statistic = 0.68). We confirm an earlier report that serum apoM levels are lower in HNF1A-MODY than in controls. Serum apoM provides good discrimination between HNF1A-MODY and Type 1 diabetes and warrants further investigation for clinical utility in diabetes diagnostics. © 2012 The Authors. Diabetic Medicine © 2012 Diabetes UK.

Evaluation of Global LAI/FPAR Products from VIIRS and MODIS: Spatiotemporal Consistency and Uncertainty

NASA Astrophysics Data System (ADS)

Xu, B.; Park, T.; Yan, K.; Chen, C.; Jing, L.; Qinhuo, L.; Song, W.; Knyazikhin, Y.; Myneni, R.

2017-12-01

The operational EOS MODIS LAI/FPAR algorithm has been successfully transitioned to Suomi-NPP VIIRS by optimizing a small set of configurable parameters in Look-Up-Tables (LUTs). Our preliminary evaluation results show a reasonable agreement between VIIRS and MODIS LAI/FPAR retrievals. However, we still need more comprehensive investigations to assure the continuity of multi-sensor based global LAI/FPAR time series, as the preliminary evaluation was spatiotemporally limited. Here, we used a multi-year (2012-2016) global LAI/FPAR product generated from VIIRS Version 1 and MODIS Collection 6 to evaluate their spatiotemporal consistency at global and site scales. We also quantified the uncertainty of the product by defining and measuring theoretical and physical terms. For both consistency and uncertainty evaluation, we accounted varying biome types and temporal resolutions (i.e., 8-day, seasonal and annual steps). A newly developed approach (a.k.a., Grading and Upscaling Ground Measurements, GUGM) generating accurate validation datasets was implemented to help validating both products. Our results clearly indicate that the LAI/FPAR retrievals from VIIRS and MODIS are quite consistent at different spatio- (i.e., global and site) and temporal- (i.e., 8-day, seasonal and annual) scales. It is also worthy to note that the rate of retrievals from the radiative transfer based main algorithm is also comparable. However, we also saw a relatively larger LAI/FPAR discrepancy over highly dense tropical forests and a slightly less retrieval rate (main algorithm) from VIIRS over high latitude regions. For the uncertainty assessment, the theoretical uncertainty of VIIRS LAI (FPAR) is less than 0.2 (0.06) for non-forest and 0.9 (0.08) for forest, which is nearly identical to those of MODIS. The physical uncertainties of VIIRS and MODIS LAI (FPAR) products assessed by comparing to ground measurements are estimated by 0.60 (0.10) and 0.55 (0.11), respectively. All of the results presented here imbue confidence in assuring the consistency between VIIRS and MODIS LAI/FPAR retrievals, and the feasibility of generating long-term multi-sensor LAI/FPAR time series.

GCK-MODY in the US National Monogenic Diabetes Registry: frequently misdiagnosed and unnecessarily treated.

PubMed

Carmody, David; Naylor, Rochelle N; Bell, Charles D; Berry, Shivani; Montgomery, Jazzmyne T; Tadie, Elizabeth C; Hwang, Jessica L; Greeley, Siri Atma W; Philipson, Louis H

2016-10-01

GCK-MODY leads to mildly elevated blood glucose typically not requiring therapy. It has been described in all ethnicities, but mainly in Caucasian Europeans. Here we describe our US cohort of GCK-MODY. We examined the rates of detection of heterozygous mutations in the GCK gene in individuals referred to the US Monogenic Diabetes Registry with a phenotype consistent with GCK-MODY. We also assessed referral patterns, treatment and demography, including ethnicity, of the cohort. Deleterious heterozygous GCK mutations were found in 54.7 % of Registry probands selected for GCK sequencing for this study. Forty-nine percent were previously unnecessarily treated with glucose-lowering agents, causing hypoglycemia and other adverse effects in some of the subjects. The proportion of probands found to have a GCK mutation through research-based testing was similar across each ethnic group. However, together African-American, Latino and Asian subjects represented only 20.5 % of screened probands and 17.2 % of those with GCK-MODY, despite higher overall diabetes prevalence in these groups. Our data show that a high detection rate of GCK-MODY is possible based on clinical phenotype and that prior to genetic diagnosis, a large percentage are inappropriately treated with glucose-lowering therapies. We also find low minority representation in our Registry, which may be due to disparities in diagnostic diabetes genetic testing and is an area needing further investigation.

Evaluation Of The MODIS-VIIRS Land Surface Reflectance Fundamental Climate Data Record.

NASA Astrophysics Data System (ADS)

Roger, J. C.; Vermote, E.; Skakun, S.; Murphy, E.; Holben, B. N.; Justice, C. O.

2016-12-01

The land surface reflectance is a fundamental climate data record at the basis of the derivation of other climate data records (Albedo, LAI/Fpar, Vegetation indices) and has been recognized as a key parameter in the understanding of the land-surface-climate processes. Here, we present the validation of the Land surface reflectance used for MODIS and VIIRS data. This methodology uses the 6SV Code and data from the AERONET network. The first part was to define a protocol to use the AERONET data. To correctly take into account the aerosol model, we used the aerosol microphysical properties provided by the AERONET network including size-distribution (%Cf, %Cc, rf, rc, σr, σc), complex refractive indices and sphericity. Over the 670 available AERONET sites, we selected 230 sites with sufficient data. To be useful for validation, the aerosol model should be readily available anytime, which is rarely the case. We then used regressions for each microphysical parameter using the aerosol optical thickness at 440nm and the Angström coefficient as parameters. Comparisons with the AERONET dataset give good APU (Accuracy-Precision-Uncertainties) for each parameter. The second part of the study relies on the theoretical land surface retrieval. We generated TOA synthetic data using aerosol models from AERONET and determined APU on the surface reflectance retrieval while applying the MODIS and VIRRS Atmospheric correction software. Over 250 AERONET sites, the global uncertainties are for MODIS band 1 (red) is always lower than 0.0015 (when surface reflectance is > 0.04). This very good result shows the validity of our reference. Then, we used this reference for validating the MODIS and VIIRS surface reflectance products. The overall accuracy clearly reaches specifications. Finally, we will present an error budget of the surface reflectance retrieval. Indeed, to better understand how to improve the methodology, we defined an exhaustive error budget. We included all inputs i.e. sensor, calibration, aerosol properties, atmospheric conditions… This latter work provides a lot of information, such as the aerosol optical thickness obviously drives the uncertainties of the retrieval, the absorption and the volume concentration of the fine aerosol mode have an important impact as well…

Retrieval of canopy moisture content for dynamic fire risk assessment using simulated MODIS bands

NASA Astrophysics Data System (ADS)

Maffei, Carmine; Leone, Antonio P.; Meoli, Giuseppe; Calabrò, Gaetano; Menenti, Massimo

2007-10-01

Forest fires are one of the major environmental hazards in Mediterranean Europe. Biomass burning reduces carbon fixation in terrestrial vegetation, while soil erosion increases in burned areas. For these reasons, more sophisticated prevention tools are needed by local authorities to forecast fire danger, allowing a sound allocation of intervention resources. Various factors contribute to the quantification of fire hazard, and among them vegetation moisture is the one that dictates vegetation susceptibility to fire ignition and propagation. Many authors have demonstrated the role of remote sensing in the assessment of vegetation equivalent water thickness (EWT), which is defined as the weight of liquid water per unit of leaf surface. However, fire models rely on the fuel moisture content (FMC) as a measure of vegetation moisture. FMC is defined as the ratio of the weight of the liquid water in a leaf over the weight of dry matter, and its retrieval from remote sensing measurements might be problematic, since it is calculated from two biophysical properties that independently affect vegetation reflectance spectrum. The aim of this research is to evaluate the potential of the Moderate Resolution Imaging Spectrometer (MODIS) in retrieving both EWT and FMC from top of the canopy reflectance. The PROSPECT radiative transfer code was used to simulate leaf reflectance and transmittance as a function of leaf properties, and the SAILH model was adopted to simulate the top of the canopy reflectance. A number of moisture spectral indexes have been calculated, based on MODIS bands, and their performance in predicting EWT and FMC has been evaluated. Results showed that traditional moisture spectral indexes can accurately predict EWT but not FMC. However, it has been found that it is possible to take advantage of the multiple MODIS short-wave infrared (SWIR) channels to improve the retrieval accuracy of FMC (r2 = 0.73). The effects of canopy structural properties on MODIS estimates of FMC have been evaluated, and it has been found that the limiting factor is leaf area index (LAI). The best results are recorded for LAI>2 (r2 = 0.83), while acceptable results (r2 = 0.58) can still be achieved for lower vegetation cover density.

Using MODIS Cloud Regimes to Sort Diagnostic Signals of Aerosol-Cloud-Precipitation Interactions

PubMed Central

Oreopoulos, Lazaros; Cho, Nayeong; Lee, Dongmin

2018-01-01

Coincident multi-year measurements of aerosol, cloud, precipitation and radiation at near-global scales are analyzed to diagnose their apparent relationships as suggestive of interactions previously proposed based on theoretical, observational, and model constructs. Specifically, we examine whether differences in aerosol loading in separate observations go along with consistently different precipitation, cloud properties, and cloud radiative effects. Our analysis uses a cloud regime (CR) framework to dissect and sort the results. The CRs come from the Moderate Resolution Imaging Spectroradiometer (MODIS) sensor and are defined as distinct groups of cloud systems with similar co-variations of cloud top pressure and cloud optical thickness. Aerosol optical depth used as proxy for aerosol loading comes from two sources, MODIS observations, and the MERRA-2 re-analysis, and its variability is defined with respect to local seasonal climatologies. The choice of aerosol dataset impacts our results substantially. We also find that the responses of the marine and continental component of a CR are frequently quite disparate. Overall, CRs dominated by warm clouds tend to exhibit less ambiguous signals, but also have more uncertainty with regard to precipitation changes. Finally, we find weak, but occasionally systematic co-variations of select meteorological indicators and aerosol, which serves as a sober reminder that ascribing changes in cloud and cloud-affected variables solely to aerosol variations is precarious. PMID:29651373

Using MODIS Cloud Regimes to Sort Diagnostic Signals of Aerosol-Cloud-Precipitation Interactions.

PubMed

Oreopoulos, Lazaros; Cho, Nayeong; Lee, Dongmin

2017-05-27

Coincident multi-year measurements of aerosol, cloud, precipitation and radiation at near-global scales are analyzed to diagnose their apparent relationships as suggestive of interactions previously proposed based on theoretical, observational, and model constructs. Specifically, we examine whether differences in aerosol loading in separate observations go along with consistently different precipitation, cloud properties, and cloud radiative effects. Our analysis uses a cloud regime (CR) framework to dissect and sort the results. The CRs come from the Moderate Resolution Imaging Spectroradiometer (MODIS) sensor and are defined as distinct groups of cloud systems with similar co-variations of cloud top pressure and cloud optical thickness. Aerosol optical depth used as proxy for aerosol loading comes from two sources, MODIS observations, and the MERRA-2 re-analysis, and its variability is defined with respect to local seasonal climatologies. The choice of aerosol dataset impacts our results substantially. We also find that the responses of the marine and continental component of a CR are frequently quite disparate. Overall, CRs dominated by warm clouds tend to exhibit less ambiguous signals, but also have more uncertainty with regard to precipitation changes. Finally, we find weak, but occasionally systematic co-variations of select meteorological indicators and aerosol, which serves as a sober reminder that ascribing changes in cloud and cloud-affected variables solely to aerosol variations is precarious.

Comprehensive Maturity Onset Diabetes of the Young (MODY) Gene Screening in Pregnant Women with Diabetes in India.

PubMed

Doddabelavangala Mruthyunjaya, Mahesh; Chapla, Aaron; Hesarghatta Shyamasunder, Asha; Varghese, Deny; Varshney, Manika; Paul, Johan; Inbakumari, Mercy; Christina, Flory; Varghese, Ron Thomas; Kuruvilla, Kurien Anil; V Paul, Thomas; Jose, Ruby; Regi, Annie; Lionel, Jessie; Jeyaseelan, L; Mathew, Jiji; Thomas, Nihal

2017-01-01

Pregnant women with diabetes may have underlying beta cell dysfunction due to mutations/rare variants in genes associated with Maturity Onset Diabetes of the Young (MODY). MODY gene screening would reveal those women genetically predisposed and previously unrecognized with a monogenic form of diabetes for further clinical management, family screening and genetic counselling. However, there are minimal data available on MODY gene variants in pregnant women with diabetes from India. In this study, utilizing the Next generation sequencing (NGS) based protocol fifty subjects were screened for variants in a panel of thirteen MODY genes. Of these subjects 18% (9/50) were positive for definite or likely pathogenic or uncertain MODY variants. The majority of these variants was identified in subjects with autosomal dominant family history, of whom five were in women with pre-GDM and four with overt-GDM. The identified variants included one patient with HNF1A Ser3Cys, two PDX1 Glu224Lys, His94Gln, two NEUROD1 Glu59Gln, Phe318Ser, one INS Gly44Arg, one GCK, one ABCC8 Arg620Cys and one BLK Val418Met variants. In addition, three of the seven offspring screened were positive for the identified variant. These identified variants were further confirmed by Sanger sequencing. In conclusion, these findings in pregnant women with diabetes, imply that a proportion of GDM patients with autosomal dominant family history may have MODY. Further NGS based comprehensive studies with larger samples are required to confirm these finding.

Comprehensive Maturity Onset Diabetes of the Young (MODY) Gene Screening in Pregnant Women with Diabetes in India

PubMed Central

Hesarghatta Shyamasunder, Asha; Varghese, Deny; Varshney, Manika; Paul, Johan; Inbakumari, Mercy; Christina, Flory; Varghese, Ron Thomas; Kuruvilla, Kurien Anil; V. Paul, Thomas; Jose, Ruby; Regi, Annie; Lionel, Jessie; Jeyaseelan, L.; Mathew, Jiji; Thomas, Nihal

2017-01-01

Pregnant women with diabetes may have underlying beta cell dysfunction due to mutations/rare variants in genes associated with Maturity Onset Diabetes of the Young (MODY). MODY gene screening would reveal those women genetically predisposed and previously unrecognized with a monogenic form of diabetes for further clinical management, family screening and genetic counselling. However, there are minimal data available on MODY gene variants in pregnant women with diabetes from India. In this study, utilizing the Next generation sequencing (NGS) based protocol fifty subjects were screened for variants in a panel of thirteen MODY genes. Of these subjects 18% (9/50) were positive for definite or likely pathogenic or uncertain MODY variants. The majority of these variants was identified in subjects with autosomal dominant family history, of whom five were in women with pre-GDM and four with overt-GDM. The identified variants included one patient with HNF1A Ser3Cys, two PDX1 Glu224Lys, His94Gln, two NEUROD1 Glu59Gln, Phe318Ser, one INS Gly44Arg, one GCK, one ABCC8 Arg620Cys and one BLK Val418Met variants. In addition, three of the seven offspring screened were positive for the identified variant. These identified variants were further confirmed by Sanger sequencing. In conclusion, these findings in pregnant women with diabetes, imply that a proportion of GDM patients with autosomal dominant family history may have MODY. Further NGS based comprehensive studies with larger samples are required to confirm these finding PMID:28095440

Assessment of Newly Proposed Clinical Criteria to Identify HNF1A MODY in Patients with an Initial Diagnosis of Type 1 or Type 2 Diabetes Mellitus.

PubMed

Grzanka, Malgorzata; Matejko, Bartlomiej; Szopa, Magdalena; Kiec-Wilk, Beata; Malecki, Maciej T; Klupa, Tomasz

2016-01-01

The most common form of maturity-onset diabetes of the young (MODY) is caused by mutations in the hepatocyte nuclear factor 1A (HNF1A) gene. However, most HNF1A mutation-carriers are initially misdiagnosed with type 1 (T1DM) or type 2 (T2DM) diabetes mellitus; hence, they often receive nonoptimal treatment. The aim of our study was to test newly proposed clinical criteria for the identification of HNF1A MODY in patients with a diagnosis of T1DM or T2DM. To achieve this, the following criteria to preselect patients for screening were used: for T1DM: TDIR (total daily insulin requirement) > 0.3 IU of insulin/kg and the percentage of basal insulin > 30% of TDIR; for T2DM: sulphonylurea- (SU-) based oral treatment (monotherapy or combined with Metformin) > 15 years and BMI < 30 kg/m(2). We reviewed the clinical data of 140 patients with T1DM and 524 clinically diagnosed with T2DM. On the basis of these criteria, we found a HNF1A mutation in 1 out of 2 individuals with a diagnosis of T1DM and 1 out of 11 selected individuals with a diagnosis of T2DM. We believe that the simplicity of the proposed criteria might prove useful in clinical practice, as an alternative to more time-consuming classical diagnostic techniques.

Mapping the Daily Progression of Large Wildland Fires Using MODIS Active Fire Data

NASA Technical Reports Server (NTRS)

Veraverbeke, Sander; Sedano, Fernando; Hook, Simon J.; Randerson, James T.; Jin, Yufang; Rogers, Brendan

2013-01-01

High temporal resolution information on burned area is a prerequisite for incorporating bottom-up estimates of wildland fire emissions in regional air transport models and for improving models of fire behavior. We used the Moderate Resolution Imaging Spectroradiometer (MODIS) active fire product (MO(Y)D14) as input to a kriging interpolation to derive continuous maps of the evolution of nine large wildland fires. For each fire, local input parameters for the kriging model were defined using variogram analysis. The accuracy of the kriging model was assessed using high resolution daily fire perimeter data available from the U.S. Forest Service. We also assessed the temporal reporting accuracy of the MODIS burned area products (MCD45A1 and MCD64A1). Averaged over the nine fires, the kriging method correctly mapped 73% of the pixels within the accuracy of a single day, compared to 33% for MCD45A1 and 53% for MCD64A1.

Validation of Quasi-Invariant Ice Cloud Radiative Quantities with MODIS Satellite-Based Cloud Property Retrievals

NASA Technical Reports Server (NTRS)

Ding, Jiachen; Yang, Ping; Kattawar, George W.; King, Michael D.; Platnick, Steven; Meyer, Kerry G.

2017-01-01

Similarity relations applied to ice cloud radiance calculations are theoretically analyzed and numerically validated. If t(1v) and t(1vg) are conserved where t is optical thickness, v the single-scattering albedo, and g the asymmetry factor, it is possible that substantially different phase functions may give rise to similar radiances in both conservative and non-conservative scattering cases, particularly in the case of large optical thicknesses. In addition to theoretical analysis, this study uses operational ice cloud optical thickness retrievals from the Moderate Resolution Imaging Spectroradiometer (MODIS) Level 2 Collection5 (C5) and Collection 6 (C6) cloud property products to verify radiative similarity relations. It is found that, if the MODIS C5 and C6 ice cloud optical thickness values are multiplied by their respective (1wg)factors, the resultant products referred to as the effective optical thicknesses become similar with their ratio values around unity. Furthermore, the ratios of the C5 and C6 ice cloud effective optical thicknesses display an angular variation pattern similar to that of the corresponding ice cloud phase function ratios. The MODIS C5 and C6 values of ice cloud similarity parameter, defined as [(1w)(1(exp. 1/2)wg)]12, also tend to be similar.

Effect of Clouds on Apertures of Space-based Air Fluorescence Detectors

NASA Technical Reports Server (NTRS)

Sokolsky, P.; Krizmanic, J.

2003-01-01

Space-based ultra-high-energy cosmic ray detectors observe fluorescence light from extensive air showers produced by these particles in the troposphere. Clouds can scatter and absorb this light and produce systematic errors in energy determination and spectrum normalization. We study the possibility of using IR remote sensing data from MODIS and GOES satellites to delimit clear areas of the atmosphere. The efficiency for detecting ultra-high-energy cosmic rays whose showers do not intersect clouds is determined for real, night-time cloud scenes. We use the MODIS SST cloud mask product to define clear pixels for cloud scenes along the equator and use the OWL Monte Carlo to generate showers in the cloud scenes. We find the efficiency for cloud-free showers with closest approach of three pixels to a cloudy pixel is 6.5% exclusive of other factors. We conclude that defining a totally cloud-free aperture reduces the sensitivity of space-based fluorescence detectors to unacceptably small levels.

Glucokinase gene mutations (MODY 2) in Asian Indians.

PubMed

Kanthimathi, Sekar; Jahnavi, Suresh; Balamurugan, Kandasamy; Ranjani, Harish; Sonya, Jagadesan; Goswami, Soumik; Chowdhury, Subhankar; Mohan, Viswanathan; Radha, Venkatesan

2014-03-01

Heterozygous inactivating mutations in the glucokinase (GCK) gene cause a hyperglycemic condition termed maturity-onset diabetes of the young (MODY) 2 or GCK-MODY. This is characterized by mild, stable, usually asymptomatic, fasting hyperglycemia that rarely requires pharmacological intervention. The aim of the present study was to screen for GCK gene mutations in Asian Indian subjects with mild hyperglycemia. Of the 1,517 children and adolescents of the population-based ORANGE study in Chennai, India, 49 were found to have hyperglycemia. These children along with the six patients referred to our center with mild hyperglycemia were screened for MODY 2 mutations. The GCK gene was bidirectionally sequenced using BigDye(®) Terminator v3.1 (Applied Biosystems, Foster City, CA) chemistry. In silico predictions of the pathogenicity were carried out using the online tools SIFT, Polyphen-2, and I-Mutant 2.0 software programs. Direct sequencing of the GCK gene in the patients referred to our Centre revealed one novel mutation, Thr206Ala (c.616A>G), in exon 6 and one previously described mutation, Met251Thr (c.752T>C), in exon 7. In silico analysis predicted the novel mutation to be pathogenic. The highly conserved nature and critical location of the residue Thr206 along with the clinical course suggests that the Thr206Ala is a MODY 2 mutation. However, we did not find any MODY 2 mutations in the 49 children selected from the population-based study. Hence prevalence of GCK mutations in Chennai is <1:1,517. This is the first study of MODY 2 mutations from India and confirms the importance of considering GCK gene mutation screening in patients with mild early-onset hyperglycemia who are negative for β-cell antibodies.

Phenotype Heterogeneity in Glucokinase-Maturity-Onset Diabetes of the Young (GCK-MODY) Patients.

PubMed

Wędrychowicz, Anna; Tobór, Ewa; Wilk, Magdalena; Ziółkowska-Ledwith, Ewa; Rams, Anna; Wzorek, Katarzyna; Sabal, Barbara; Stelmach, Małgorzata; Starzyk, Jerzy B

2017-09-01

The aim of the study was to evaluate the clinical phenotypes of glucokinase-maturity-onset diabetes of the young (GCK-MODY) pediatric patients from Southwest Poland and to search for phenotype-genotype correlations. We conducted a retrospective analysis of data on 37 CGK-MODY patients consisting of 21 girls and 16 boys of ages 1.9-20.1 (mean 12.5±5.2) years, treated in our centre in the time period between 2002 and 2013. GCK-MODY carriers were found in a frequency of 3% among 1043 diabetes mellitus (DM) patients and constituted the second most numerous group of DM patients, following type 1 DM, in our centre. The mean age of GCK-MODY diagnosis was 10.4±4.5 years. The findings leading to the diagnosis were impaired fasting glucose (IFG) (15/37), symptoms of hyperglycemia (4/37), and a GCK-MODY family history (18/37). Mean fasting blood glucose level was 6.67±1.64 mmol/L. In the sample, there were patients with normal values (4/37), those with DM (10/37), and IFG (23/37). In OGTT, 120 min glucose level was normal in 8, diabetic in 2, and characteristic for glucose intolerance in 27 of the 37 cases. Twelve of the 37 cases (32%) were identified as GCK-MODY carriers. In the total group, mean C-peptide level was 2.13±0.65 ng/mL and HbA1c was 6.26±0.45% (44.9±-18 mmol/mol). Thirty-two patients had a family history of DM. DM autoantibodies were detected in two patients. The most common mutations were p.Gly318Arg (11/37) and p.Val302Leu (8/37). There was no correlation between type of mutations and plasma glucose levels. The phenotype of GCK-MODY patients may vary from those characteristic for other DM types to an asymptomatic state with normal FG with no correlation with genotype.

Genetic basis of early-onset, MODY-like diabetes in Japan and features of patients without mutations in the major MODY genes: dominance of maternal inheritance.

PubMed

Yorifuji, Tohru; Higuchi, Shinji; Kawakita, Rie; Hosokawa, Yuki; Aoyama, Takane; Murakami, Akiko; Kawae, Yoshiko; Hatake, Kazue; Nagasaka, Hironori; Tamagawa, Nobuyoshi

2018-06-21

Causative mutations cannot be identified in the majority of Asian patients with suspected maturity-onset diabetes of the young (MODY). To elucidate the genetic basis of Japanese patients with MODY-like diabetes and gain insight into the etiology of patients without mutations in the major MODY genes. 263 Japanese patients with early-onset, nonobese, MODY-like diabetes mellitus referred to Osaka City General Hospital for diagnosis. Mutational analysis of the four major MODY genes (GCK, HNF1A, HNF4A, HNF1B) by Sanger sequencing. Mutation-positive and mutation-negative patients were further analyzed for clinical features. Mutations were identified in 103 (39.2%) patients; 57 mutations in GCK; 29, HNF1A; 7, HNF4A; and 10, HNF1B. Contrary to conventional diagnostic criteria, 18.4% of mutation-positive patients did not have affected parents and 8.2% were in the overweight range (BMI >85 th percentile). HOMA-IR at diagnosis was elevated (>2) in 15 of 66 (22.7%) mutation-positive patients. Compared with mutation-positive patients, mutation-negative patients were significantly older (p = 0.003), and had higher BMI percentile at diagnosis (p = 0.0006). Interestingly, maternal inheritance of diabetes was significantly more common in mutation-negative patients (p = 0.0332) and these patients had significantly higher BMI percentile as compared with mutation-negative patients with paternal inheritance (p = 0.0106). Contrary to the conventional diagnostic criteria, de novo diabetes, overweight, and insulin-resistance are common in Japanese patients with mutation-positive MODY. A significant fraction of mutation-negative patients had features of early-onset type 2 diabetes common in Japanese, and non-Mendelian inheritance needs to be considered for these patients. This article is protected by copyright. All rights reserved. This article is protected by copyright. All rights reserved.

NASA's MODIS/VIIRS Land Surface Temperature and Emissivity Products: Asssessment of Accuracy, Continuity and Science Uses

NASA Astrophysics Data System (ADS)

Hulley, G. C.; Malakar, N.; Islam, T.

2017-12-01

Land Surface Temperature and Emissivity (LST&E) are an important Earth System Data Record (ESDR) and Environmental Climate Variable (ECV) defined by NASA and GCOS respectively. LST&E data are key variables used in land cover/land use change studies, in surface energy balance and atmospheric water vapor retrieval models and retrievals, and in climate research. LST&E products are currently produced on a routine basis using data from the MODIS instruments on the NASA EOS platforms and by the VIIRS instrument on the Suomi-NPP platform that serves as a bridge between NASA EOS and the next-generation JPSS platforms. Two new NASA LST&E products for MODIS (MxD21) and VIIRS (VNP21) are being produced during 2017 using a new approach that addresses discrepancies in accuracy and consistency between the current suite of split-window based LST products. The new approach uses a Temperature Emissivity Separation (TES) algorithm, originally developed for the ASTER instrument, to physically retrieve both LST and spectral emissivity consistently for both sensors with high accuracy and well defined uncertainties. This study provides a rigorous assessment of accuracy of the MxD21/VNP21 products using temperature- and radiance-based validation strategies and demonstrates continuity between the products using collocated matchups over CONUS. We will further demonstrate potential science use of the new products with studies related to heat waves, monitoring snow melt dynamics, and land cover/land use change.

Computational Short-cutting the Big Data Classification Bottleneck: Using the MODIS Land Cover Product to Derive a Consistent 30 m Landsat Land Cover Product of the Conterminous United States

NASA Astrophysics Data System (ADS)

Zhang, H.; Roy, D. P.

2016-12-01

Classification is a fundamental process in remote sensing used to relate pixel values to land cover classes present on the surface. The state of the practice for large area land cover classification is to classify satellite time series metrics with a supervised (i.e., training data dependent) non-parametric classifier. Classification accuracy generally increases with training set size. However, training data collection is expensive and the optimal training distribution over large areas is unknown. The MODIS 500 m land cover product is available globally on an annual basis and so provides a potentially very large source of land cover training data. A novel methodology to classify large volume Landsat data using high quality training data derived automatically from the MODIS land cover product is demonstrated for all of the Conterminous United States (CONUS). The known misclassification accuracy of the MODIS land cover product and the scale difference between the 500 m MODIS and 30 m Landsat data are accommodated for by a novel MODIS product filtering, Landsat pixel selection, and iterative training approach to balance the proportion of local and CONUS training data used. Three years of global Web-enabled Landsat data (WELD) data for all of the CONUS are classified using a random forest classifier and the results assessed using random forest `out-of-bag' training samples. The global WELD data are corrected to surface nadir BRDF-Adjusted Reflectance and are defined in 158 × 158 km tiles in the same projection and nested to the MODIS land cover products. This reduces the need to pre-process the considerable Landsat data volume (more than 14,000 Landsat 5 and 7 scenes per year over the CONUS covering 11,000 million 30 m pixels). The methodology is implemented in a parallel manner on WELD tile by tile basis but provides a wall-to-wall seamless 30 m land cover product. Detailed tile and CONUS results are presented and the potential for global production using the recently available global WELD products are discussed.

CALIPSO IIR Version 2 Level 1b calibrated radiances: analysis and reduction of residual biases in the Northern Hemisphere

NASA Astrophysics Data System (ADS)

Garnier, Anne; Trémas, Thierry; Pelon, Jacques; Lee, Kam-Pui; Nobileau, Delphine; Gross-Colzy, Lydwine; Pascal, Nicolas; Ferrage, Pascale; Scott, Noëlle A.

2018-04-01

Version 2 of the Level 1b calibrated radiances of the Imaging Infrared Radiometer (IIR) on board the Cloud-Aerosol Lidar and Infrared Satellite Observation (CALIPSO) satellite has been released recently. This new version incorporates corrections of small but systematic seasonal calibration biases previously revealed in Version 1 data products mostly north of 30° N. These biases - of different amplitudes in the three IIR channels 8.65 µm (IIR1), 10.6 µm (IIR2), and 12.05 µm (IIR3) - were made apparent by a striping effect in images of IIR inter-channel brightness temperature differences (BTDs) and through seasonal warm biases of nighttime IIR brightness temperatures in the 30-60° N latitude range. The latter were highlighted through observed and simulated comparisons with similar channels of the Moderate Resolution Imaging Spectroradiometer (MODIS) on board the Aqua spacecraft. To characterize the calibration biases affecting Version 1 data, a semi-empirical approach is developed, which is based on the in-depth analysis of the IIR internal calibration procedure in conjunction with observations such as statistical comparisons with similar MODIS/Aqua channels. Two types of calibration biases are revealed: an equalization bias affecting part of the individual IIR images and a global bias affecting the radiometric level of each image. These biases are observed only when the temperature of the instrument increases, and they are found to be functions of elapsed time since night-to-day transition, regardless of the season. Correction coefficients of Version 1 radiances could thus be defined and implemented in the Version 2 code. As a result, the striping effect seen in Version 1 is significantly attenuated in Version 2. Systematic discrepancies between nighttime and daytime IIR-MODIS BTDs in the 30-60° N latitude range in summer are reduced from 0.2 K in Version 1 to 0.1 K in Version 2 for IIR1-MODIS29. For IIR2-MODIS31 and IIR3-MODIS32, they are reduced from 0.4 K to close to zero, except for IIR3-MODIS32 in June, where the night-minus-day difference is around -0.1 K.

Pipeline oil fire detection with MODIS active fire products

NASA Astrophysics Data System (ADS)

Ogungbuyi, M. G.; Martinez, P.; Eckardt, F. D.

2017-12-01

We investigate 85 129 MODIS satellite active fire events from 2007 to 2015 in the Niger Delta of Nigeria. The region is the oil base for Nigerian economy and the hub of oil exploration where oil facilities (i.e. flowlines, flow stations, trunklines, oil wells and oil fields) are domiciled, and from where crude oil and refined products are transported to different Nigerian locations through a network of pipeline systems. Pipeline and other oil facilities are consistently susceptible to oil leaks due to operational or maintenance error, and by acts of deliberate sabotage of the pipeline equipment which often result in explosions and fire outbreaks. We used ground oil spill reports obtained from the National Oil Spill Detection and Response Agency (NOSDRA) database (see www.oilspillmonitor.ng) to validate MODIS satellite data. NOSDRA database shows an estimate of 10 000 spill events from 2007 - 2015. The spill events were filtered to include largest spills by volume and events occurring only in the Niger Delta (i.e. 386 spills). By projecting both MODIS fire and spill as `input vector' layers with `Points' geometry, and the Nigerian pipeline networks as `from vector' layers with `LineString' geometry in a geographical information system, we extracted the nearest MODIS events (i.e. 2192) closed to the pipelines by 1000m distance in spatial vector analysis. The extraction process that defined the nearest distance to the pipelines is based on the global practices of the Right of Way (ROW) in pipeline management that earmarked 30m strip of land to the pipeline. The KML files of the extracted fires in a Google map validated their source origin to be from oil facilities. Land cover mapping confirmed fire anomalies. The aim of the study is to propose a near-real-time monitoring of spill events along pipeline routes using 250 m spatial resolution of MODIS active fire detection sensor when such spills are accompanied by fire events in the study location.

Evaluation of MODIS and VIIRS Albedo Products Using Ground and Airborne Measurements and Development of Ceos/Wgcv/Lpv Albedo Ecv Protocols

NASA Astrophysics Data System (ADS)

Wang, Z.; Roman, M. O.; Schaaf, C.; Sun, Q.; Liu, Y.; Saenz, E. J.; Gatebe, C. K.

2014-12-01

Surface albedo, defined as the ratio of the hemispheric reflected solar radiation flux to the incident flux upon the surface, is one of the essential climate variables and quantifies the radiation interaction between the atmosphere and the land surface. An absolute accuracy of 0.02-0.05 for global surface albedo is required by climate models. The MODerate resolution Imaging Spectroradiometer (MODIS) standard BRDF/albedo product makes use of a linear "kernel-driven" RossThick-LiSparse Reciprocal (RTLSR) BRDF model to describe the reflectance anisotropy. The surface albedo is calculated by integrating the BRDF over the above ground hemisphere. While MODIS Terra was launched in Dec 1999 and MODIS Aqua in 2002, the Visible Infrared Imaging Radiometer Suite (VIIRS) on the Suomi-NPP satellite was launched more recently on October 28, 2011. Thus a long term record of BRDF, albedo and Nadir BRDF-Adjusted Reflectance (NBAR) products from VIIRS can be generated through MODIS heritage algorithms. Several investigations have evaluated the MODIS albedo products during the growing season, as well as during dormant and snow covered periods. The Land Product Validation (LPV) sub-group of the Committee on Earth Observation Satellites (CEOS) Working Group on Calibration and Validation (WGCV) aims to address the challenges associated with the validation of global land products. The validation of global surface radiation/albedo products is one of the LPV subgroup activities. In this research, a reference dataset covering various land surface types and vegetation structure is assembled to assess the accuracy of satellite albedo products. This dataset includes in situ data (Baseline Surface Radiation Network (BSRN), FLUXNET and Long Term Ecological Research network (LTER) etc.) and airborne measurements (e.g. Cloud Absorption Radiometer (CAR)). Spatially representative analysis is applied to each site to establish whether the ground measurements can adequately represent moderate spatial resolution remotely sensed albedo products.

Prolonged episodes of hypoglycaemia in HNF4A-MODY mutation carriers with IGT. Evidence of persistent hyperinsulinism into early adulthood.

PubMed

Bacon, S; Kyithar, M P; Condron, E M; Vizzard, N; Burke, M; Byrne, M M

2016-12-01

HNF4A is an established cause of maturity onset diabetes of the young (MODY). Congenital hyperinsulinism can also be associated with mutations in the HNF4A gene. A dual phenotype is observed in HNF4A-MODY with hyperinsulinaemic hypoglycaemia in the neonatal period progressing to diabetes in adulthood. The nature and timing of the transition remain poorly defined. We performed an observational study to establish changes in glycaemia and insulin secretion over a 6-year period. We investigated glycaemic variability and hypoglycaemia in HNF4A-MODY using a continuous glucose monitoring system (CGMS). An OGTT with measurement of glucose, insulin and C-peptide was performed in HNF4A participants with diabetes mellitus (DM) (n = 14), HNF4A-IGT (n = 7) and age- and BMI-matched MODY negative family members (n = 10). Serial assessment was performed in the HNF4A-IGT cohort. In a subset of HNF4A-MODY mutation carriers (n = 10), CGMS was applied over a 72-h period. There was no deterioration in glycaemic control in the HNF4A-IGT cohort. The fasting glucose-to-insulin ratio was significantly lower in the HNF4A-IGT cohort when compared to the normal control group (0.13 vs. 0.24, p = 0.03). CGMS profiling demonstrated prolonged periods of hypoglycaemia in the HNF4A-IGT group when compared to the HNF4A-DM group (432 vs. 138 min p = 0.04). In a young adult HNF4A-IGT cohort, we demonstrate preserved glucose, insulin and C-peptide secretory responses to oral glucose. Utilising CGMS, prolonged periods of hypoglycaemia are evident despite a median age of 21 years. We propose a prolonged hyperinsulinaemic phase into adulthood is responsible for the notable hypoglycaemic episodes.

Analysis Of The Land Surface Temperature And NDVI Using MODIS Data On The Arctic Tundra During The Last Decade

NASA Astrophysics Data System (ADS)

Mattar, C.; Duran-Alarcon, C.; Jimenez-Munoz, J. C.; Sobrino, J. A.

2013-12-01

The arctic tundra is one of the most sensible biome to climate conditions which has experienced important changes in the spatial distribution of temperature and vegetation in the last decades. In this paper we analyzed the spatio-temporal trend of the Land Surface Temperature (LST) and the Normalized Difference Vegetation Index (NDVI) over the arctic tundra biome during the last decade (2001-2012) derived from Moderate Resolution Imaging Spectroradiometer (MODIS) land products MOD11C3 (LST) and MOD13C2 (NDVI) were used. Anomalies for each variable were analyzed at monthly level, and the magnitude and statistical significance of the trends were computed using the non-parametric tests of Sen's Slope and Mann-Kendal respectively. The results obtained from MODIS LST data showed a significant increase (p-value < 0.05) on surface temperature over the arctic tundra in the last decade. In the case of the NDVI, the trend was positive (increase on NDVI) but statistically not significant (p-value < 0.05). All tundra regions defined in the Circumpolar Arctic Vegetation Map have presented positive and statistically significant trends in NDVI and LST. Values of trends obtained from MODIS data over all the tundra regions were +1.10 [°C/dec] in the case of LST and +0.005 [NDVI value/dec] in the case of NDVI.

MODY3, renal cysts, and Dandy-Walker variants with a microdeletion spanning the HNF1A gene.

PubMed

Matsukura, Hiro; Nagamori, Mariko; Miya, Kazushi; Yorifuji, Tohru

2017-09-01

Heterozygous hepatocyte nuclear factor-1-α gene (HNF1A) mutations are the most common cause of maturity-onset diabetes of the young (MODY), but they rarely involve extrahepatic manifestations. Renal cysts and diabetes syndrome can be caused by HNF1B mutations. No association between MODY3 and Dandy-Walker variants (DWV) has been reported. HNF1A mutations might be responsible for renal malformations. In a Japanese girl with glycosuria, developmental delay, mental retardation, renal cysts, and DWV, the HNF1B gene had no mutations. Array comparative genomic hybridization analysis identified a de-novo interstitial 12q24.22-q24.31 deletion of 5.6 Mb encompassing the HNF1A gene, which is compatible with a diagnosis of MODY3. The variety of phenotypes suggests a novel microdeletion syndrome spanning the HNF1A gene. Because HNF1B functions as an HNF1A/HNF1B heterodimer, haploinsufficient HNF1A interacts with a certain HNF1B haplotype. The resulting truncated heterodimer might engender renal cysts. More patients with well-defined deletion within 12q.24.31 must be evaluated to produce a detailed genotype-phenotype correlation and to elucidate this emerging microdeletion syndrome.
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MODIS information, data and control system (MIDACS) operations concepts

NASA Technical Reports Server (NTRS)

Han, D.; Salomonson, V.; Ormsby, J.; Ardanuy, P.; Mckay, A.; Hoyt, D.; Jaffin, S.; Vallette, B.; Sharts, B.; Folta, D.

1988-01-01

The MODIS Information, Data, and Control System (MIDACS) Operations Concepts Document provides a basis for the mutual understanding between the users and the designers of the MIDACS, including the requirements, operating environment, external interfaces, and development plan. In defining the concepts and scope of the system, how the MIDACS will operate as an element of the Earth Observing System (EOS) within the EosDIS environment is described. This version follows an earlier release of a preliminary draft version. The individual operations concepts for planning and scheduling, control and monitoring, data acquisition and processing, calibration and validation, data archive and distribution, and user access do not yet fully represent the requirements of the data system needed to achieve the scientific objectives of the MODIS instruments and science teams. The teams are not yet formed; however, it is possible to develop the operations concepts based on the present concept of EosDIS, the level 1 and level 2 Functional Requirements Documents, and through interviews and meetings with key members of the scientific community. The operations concepts were exercised through the application of representative scenarios.

Requirements for an Advanced Ocean Radiometer

NASA Technical Reports Server (NTRS)

Meister, Gerhard; McClain, Charles R.; Ahmad, Ziauddin; Bailey, Sean W.; Barnes, Robert A.; Brown, Steven; Eplee, Robert E.; Franz, Bryan; Holmes, Alan; Monosmith, W. Bryan;

Testing for monogenic diabetes among children and adolescents with antibody-negative clinically defined Type 1 diabetes.

PubMed

Rubio-Cabezas, O; Edghill, E L; Argente, J; Hattersley, A T

2009-10-01

Monogenic diabetes is frequently misdiagnosed as Type 1 diabetes. We aimed to screen for undiagnosed monogenic diabetes in a cohort of children who had a clinical diagnosis of Type 1 diabetes but were pancreatic autoantibody-negative. We studied 252 patients diagnosed clinically with Type 1 diabetes between 6 months and 17 years of age. Pancreatic autoantibodies [islet cell autoantibodies (ICA), glutamic acid decarboxylase antibodies (GADA) and/or insulinoma-associated antigen-2 antibodies (IA2A)] were absent in 25 cases (9.9%). The most frequent genes involved in monogenic diabetes [KCNJ11 and INS for neonatal diabetes and HNF1A and HNF4A for maturity-onset diabetes of the young (MODY)] were directly sequenced. Two of the 25 (8%) antibody-negative patients had de novo heterozygous mutations in INS; c.94G>A (G32S) and c.265C>T (R89C). The two patients presented with non-ketotic hyperglycaemia at 8 and 11 months of age. In contrast, the four antibody-positive patients who presented at a similar age (6-12 months) had a more severe metabolic derangement, manifested as ketosis in all four cases, with ketoacidosis in two. At ages 15 and 5 years, both INS mutation patients were prescribed a replacement dose of insulin with good glycaemic control [glycated haemoglobin (HbA(1c)) 7.0 and 7.2%]. No mutations were found in KCNJ11, HNF1A or HNF4A. The identification of patients with monogenic diabetes from children with clinically defined Type 1 diabetes may be helped by clinical criteria including the absence of pancreatic autoantibodies.

Targeted next-generation sequencing reveals MODY in up to 6.5% of antibody-negative diabetes cases listed in the Norwegian Childhood Diabetes Registry.

PubMed

Johansson, Bente B; Irgens, Henrik U; Molnes, Janne; Sztromwasser, Paweł; Aukrust, Ingvild; Juliusson, Petur B; Søvik, Oddmund; Levy, Shawn; Skrivarhaug, Torild; Joner, Geir; Molven, Anders; Johansson, Stefan; Njølstad, Pål R

2017-04-01

MODY can be wrongly diagnosed as type 1 diabetes in children. We aimed to find the prevalence of MODY in a nationwide population-based registry of childhood diabetes. Using next-generation sequencing, we screened the HNF1A, HNF4A, HNF1B, GCK and INS genes in all 469 children (12.1%) negative for both GAD and IA-2 autoantibodies and 469 antibody-positive matched controls selected from the Norwegian Childhood Diabetes Registry (3882 children). Variants were classified using clinical diagnostic criteria for pathogenicity ranging from class 1 (neutral) to class 5 (pathogenic). We identified 58 rare exonic and splice variants in cases and controls. Among antibody-negative patients, 6.5% had genetic variants of classes 3-5 (vs 2.4% in controls; p = 0.002). For the stricter classification (classes 4 and 5), the corresponding number was 4.1% (vs 0.2% in controls; p = 1.6 × 10 -5 ). HNF1A showed the strongest enrichment of class 3-5 variants, with 3.9% among antibody-negative patients (vs 0.4% in controls; p = 0.0002). Antibody-negative carriers of variants in class 3 had a similar phenotype to those carrying variants in classes 4 and 5. This is the first study screening for MODY in all antibody-negative children in a nationwide population-based registry. Our results suggest that the prevalence of MODY in antibody-negative childhood diabetes may reach 6.5%. One-third of these MODY cases had not been recognised by clinicians. Since a precise diagnosis is important for treatment and genetic counselling, molecular screening of all antibody-negative children should be considered in routine diagnostics.

Assessment of VIIRS daily BRDF/Albedo product using in situ measurement of SURFRAD sites and MODIS V006 daily BRDF/Albedo product

NASA Astrophysics Data System (ADS)

Liu, Y.; Wang, Z.; Sun, Q.; Schaaf, C.; Roman, M. O.

2014-12-01

Surface albedo is defined as the ratio of upwelling to downwelling radiative flux. It's important for understanding the global energy budget. Remote sensing albedo products provide global time continuous coverage to help capture global energy variability and change. The Visible Infrared Imaging Radiometer Suite (VIIRS) on the Suomi-NPP satellite, launched on October 28, 2011, is aiming to provide continues data record with the MODerate resolution Imaging Spectroradiometer (MODIS), which has been providing Bidirectional Reflectance Distribution Function (BRDF)/Albedo product since 2000. By utilizing the same approach that was used for the most recently V006 daily MODIS BRDF/Albedo product, VIIRS has the ability to keep providing products for research and operational users. Validating albedo product of VIIRS using in situmeasured albedo can assure the quality for land surface climate and biosphere models, and comparing with MODIS product can assure time continues of BRDF/albedo product. The daily BRDF/Albedo product still uses 16-day period multispectral, cloud-cleared, atmospherically-corrected surface reflectances to fit the Ross-Thick/Li-Sparse-Reciprocal semi-empirical BRDF model. But the multiday observations are also weighted based on proximity to the production date in order to emphasis on that individual day. Surface Radiation Budget Network (SURFRAD) was established in 1993 through the support of NOAA's Office of Global Programs. In situ albedo was driven from downwelling and upwelling radiative flux measured from the towers. Fraction of diffuse sky light was calculated using the direct and diffuse solar recorded in the data. It was further used to translate VIIRS, MODIS black sky and white sky albedos into actual albedo at local solar noon. Results show that VIIRS, MODIS and in situ albedo agree well at SURFARD spatially representative sites. While the VIIRS surface reflectance, snow, and cloud algorithms are still undergoing revision, the result shows that VIIRS can provide comparable albedo products with MODIS. The accuracy of both products can meet the requirement for climate and biosphere models. In situ albedo also can be gained from Baseline Surface Radiation Network (BSRN), FLUXNET and Long Term Ecological Research network (LTER) etc., which will be used in future validation work.

Modeling Surface Climate in US Cities Using Simple Biosphere Model Sib2

NASA Technical Reports Server (NTRS)

Zhang, Ping; Bounoua, Lahouari; Thome, Kurtis; Wolfe, Robert; Imhoff, Marc

2015-01-01

We combine Landsat- and the Moderate Resolution Imaging Spectroradiometer (MODIS)-based products in the Simple Biosphere model (SiB2) to assess the effects of urbanized land on the continental US (CONUS) surface climate. Using National Land Cover Database (NLCD) Impervious Surface Area (ISA), we define more than 300 urban settlements and their surrounding suburban and rural areas over the CONUS. The SiB2 modeled Gross Primary Production (GPP) over the CONUS of 7.10 PgC (1 PgC= 10(exp 15) grams of Carbon) is comparable to the MODIS improved GPP of 6.29 PgC. At state level, SiB2 GPP is highly correlated with MODIS GPP with a correlation coefficient of 0.94. An increasing horizontal GPP gradient is shown from the urban out to the rural area, with, on average, rural areas fixing 30% more GPP than urbans. Cities built in forested biomes have stronger UHI magnitude than those built in short vegetation with low biomass. Mediterranean climate cities have a stronger UHI in wet season than dry season. Our results also show that for urban areas built within forests, 39% of the precipitation is discharged as surface runoff during summer versus 23% in rural areas.

Overview of CERES Cloud Properties Derived From VIRS AND MODIS DATA

NASA Technical Reports Server (NTRS)

Minis, Patrick; Geier, Erika; Wielicki, Bruce A.; Sun-Mack, Sunny; Chen, Yan; Trepte, Qing Z.; Dong, Xiquan; Doelling, David R.; Ayers, J. Kirk; Khaiyer, Mandana M.

2006-01-01

Simultaneous measurement of radiation and cloud fields on a global basis is recognized as a key component in understanding and modeling the interaction between clouds and radiation at the top of the atmosphere, at the surface, and within the atmosphere. The NASA Clouds and Earth s Radiant Energy System (CERES) Project (Wielicki et al., 1998) began addressing this issue in 1998 with its first broadband shortwave and longwave scanner on the Tropical Rainfall Measuring Mission (TRMM). This was followed by the launch of two CERES scanners each on Terra and Aqua during late 1999 and early 2002, respectively. When combined, these satellites should provide the most comprehensive global characterization of clouds and radiation to date. Unfortunately, the TRMM scanner failed during late 1998. The Terra and Aqua scanners continue to operate, however, providing measurements at a minimum of 4 local times each day. CERES was designed to scan in tandem with high resolution imagers so that the cloud conditions could be evaluated for every CERES measurement. The cloud properties are essential for converting CERES radiances shortwave albedo and longwave fluxes needed to define the radiation budget (ERB). They are also needed to unravel the impact of clouds on the ERB. The 5-channel, 2-km Visible Infrared Scanner (VIRS) on the TRMM and the 36-channel 1-km Moderate Resolution Imaging Spectroradiometer (MODIS) on Terra and Aqua are analyzed to define the cloud properties for each CERES footprint. To minimize inter-satellite differences and aid the development of useful climate-scale measurements, it was necessary to ensure that each satellite imager is calibrated in a fashion consistent with its counterpart on the other CERES satellites (Minnis et al., 2006) and that the algorithms are as similar as possible for all of the imagers. Thus, a set of cloud detection and retrieval algorithms were developed that could be applied to all three imagers utilizing as few channels as possible while producing stable and accurate cloud properties. This paper discusses the algorithms and results of applying those techniques to more than 5 years of Terra MODIS, 3 years of Aqua MODIS, and 4 years of TRMM VIRS data.

Regional Inversion of the Maximum Carboxylation Rate (Vcmax) through the Sunlit Light Use Efficiency Estimated Using the Corrected Photochemical Reflectance Ratio Derived from MODIS Data

NASA Astrophysics Data System (ADS)

Zheng, T.; Chen, J. M.

2016-12-01

The maximum carboxylation rate (Vcmax), despite its importance in terrestrial carbon cycle modelling, remains challenging to obtain for large scales. In this study, an attempt has been made to invert the Vcmax using the gross primary productivity from sunlit leaves (GPPsun) with the physiological basis that the photosynthesis rate for leaves exposed to high solar radiation is mainly determined by the Vcmax. Since the GPPsun can be calculated through the sunlit light use efficiency (ɛsun), the main focus becomes the acquisition of ɛsun. Previous studies using site level reflectance observations have shown the ability of the photochemical reflectance ratio (PRR, defined as the ratio between the reflectance from an effective band centered around 531nm and a reference band) in tracking the variation of ɛsun for an evergreen coniferous stand and a deciduous broadleaf stand separately and the potential of a NDVI corrected PRR (NPRR, defined as the product of NDVI and PRR) in producing a general expression to describe the NPRR-ɛsun relationship across different plant function types. In this study, a significant correlation (R2 = 0.67, p<0.001) between the MODIS derived NPRR and the site level ɛsun calculated using flux data for four Canadian flux sites has been found for the year 2010. For validation purpose, the ɛsun in 2009 for the same sites are calculated using the MODIS NPRR and the expression from 2010. The MODIS derived ɛsun matches well with the flux calculated ɛsun (R2 = 0.57, p<0.001). Same expression has then been applied over a 217 × 193 km area in Saskatchewan, Canada to obtain the ɛsun and thus GPPsun for the region during the growing season in 2008 (day 150 to day 260). The Vcmax for the region is inverted using the GPPsun and the result is validated at three flux sites inside the area. The results show that the approach is able to obtain good estimations of Vcmax values with R2 = 0.68 and RMSE = 8.8 μmol m-2 s-1.

Beyond MODIS: Developing an aerosol climate data record

NASA Astrophysics Data System (ADS)

Levy, R. C.; Mattoo, S.; Munchak, L. A.; Patadia, F.; Laszlo, I.; Holz, R.

2013-12-01

As defined by the National Research Council, a climate data record (CDR) is a time series of measurements of sufficient length, consistency, and continuity to determine climate variability and change. As one of our most pressing research questions concerns changes in global direct aerosol radiative forcing (DARF), creating an aerosol CDR is of high importance. To reduce our uncertainties in DARF, we need uncertainty in global aerosol optical depth (AOD) reduced to ×0.02 or better, or about 10% of global mean AOD (~0.15-0.20). To quantify aerosol trends with significance, we also need a stable time series at least 20-30 years. By this Fall-2013 AGU meeting, the Moderate Resolution Imaging Spectrometer (MODIS) has been flying on NASA's Terra and Aqua satellites for 14 years and 11.5 years, respectively. During this time, we have fine-tuned the aerosol retrieval algorithms and data processing protocols, resulting in a well characterized product of aerosol optical depth (AOD). MODIS AOD has been extensively compared to ground-based sunphotometer data, showing per-retrieval expected error (EE) of ×(0.03 + 5%) over ocean, and has been generally adopted as a robust and stable environmental data record (EDR). With the 2011 launch of the Visible and Infrared Imaging Radiometer Suite (VIIRS) aboard Suomi-NPP, we have begun a new aerosol time series. The VIIRS AOD product has stabilized to the point where, compared to ground-based AERONET sunphotometer, the VIIRS AOD is within similar EE envelope as MODIS. Thus, if VIIRS continues to perform as expected, it too can provide a robust and stable aerosol EDR. What will it take to stitch MODIS and VIIRS into a robust aerosol CDR? Based on the recent experience of MODIS 'Collection 6' development, there are many details of aerosol retrieval that each lead to ×0.01 uncertainties in global AOD. These include 'radiative transfer' assumptions such as calculations for gas absorption and sea-level Rayleigh optical depth, 'decision making' assumptions such as cloud masking and pixel selection, as well as 'retrieval' assumptions such as aerosol type, and surface reflectance model. Also there are instrument issues such as calibration and geo-location, which even on the level of 1-2%, will lead to 10% error in retrieved AOD. At this point, however, many of these issues have been solved, or are being quantified for MODIS and VIIRS. In the past year, we created a generic dark-target aerosol retrieval algorithm, which can be applied to MODIS, VIIRS, or any other sensor with a similar set of wavelength bands. We applied the same radiative transfer codes for creating lookup tables, the same protocols for deriving non-aerosol assumptions, and the same criteria for cloud masking. Although there are still inconsistencies to work out, this generic algorithm is being applied to selected months having VIIRS/MODIS overlap. Comparing to AERONET, and with each other, we quantify the statistical agreement between MODIS and VIIRS, both for the official algorithms run on each sensor, as well as for our generic algorithm run on both.

Keeping it simple: Monitoring flood extent in large data-poor wetlands using MODIS SWIR data

NASA Astrophysics Data System (ADS)

Wolski, Piotr; Murray-Hudson, Mike; Thito, Kgalalelo; Cassidy, Lin

2017-05-01

Characterising inundation conditions for flood-pulsed wetlands is a critical first step towards assessment of flood risk as well as towards understanding hydrological dynamics that underlay their ecology and functioning. In this paper, we develop a series of inundation maps for the Okavango Delta, Botswana, based on the thresholding of the SWIR band (b7) MODIS MCD43A4 product. We show that in the Okavango Delta, SWIR is superior to other spectral bands or derived indices, and illustrate an innovative way of defining the spectral threshold used to separate inundated from dry land. The threshold is determined dynamically for each scene based on reflectances of training areas capturing end-members of the inundation spectrum. The method provides a very good accuracy and is suitable for automated processing.

Sensitivity of Marine Warm Cloud Retrieval Statistics to Algorithm Choices: Examples from MODIS Collection 6

NASA Astrophysics Data System (ADS)

Platnick, S.; Wind, G.; Zhang, Z.; Ackerman, S. A.; Maddux, B. C.

2012-12-01

The optical and microphysical structure of warm boundary layer marine clouds is of fundamental importance for understanding a variety of cloud radiation and precipitation processes. With the advent of MODIS (Moderate Resolution Imaging Spectroradiometer) on the NASA EOS Terra and Aqua platforms, simultaneous global/daily 1km retrievals of cloud optical thickness and effective particle size are provided, as well as the derived water path. In addition, the cloud product (MOD06/MYD06 for MODIS Terra and Aqua, respectively) provides separate effective radii results using the 1.6, 2.1, and 3.7 μm spectral channels. Cloud retrieval statistics are highly sensitive to how a pixel identified as being "not-clear" by a cloud mask (e.g., the MOD35/MYD35 product) is determined to be useful for an optical retrieval based on a 1-D cloud model. The Collection 5 MODIS retrieval algorithm removed pixels associated with cloud edges (defined by immediate adjacency to "clear" MOD/MYD35 pixels) as well as ocean pixels with partly cloudy elements in the 250m MODIS cloud mask - part of the so-called Clear Sky Restoral (CSR) algorithm. Collection 6 attempts retrievals for those two pixel populations, but allows a user to isolate or filter out the populations via CSR pixel-level Quality Assessment (QA) assignments. In this paper, using the preliminary Collection 6 MOD06 product, we present global and regional statistical results of marine warm cloud retrieval sensitivities to the cloud edge and 250m partly cloudy pixel populations. As expected, retrievals for these pixels are generally consistent with a breakdown of the 1D cloud model. While optical thickness for these suspect pixel populations may have some utility for radiative studies, the retrievals should be used with extreme caution for process and microphysical studies.

Above-Cloud Precipitable Water Retrievals using the MODIS 0.94 micron Band with Applications for Multi-Layer Cloud Detection

NASA Technical Reports Server (NTRS)

Platnick, S.; Wind, G.

2004-01-01

In order to perform satellite retrievals of cloud properties, it is important to account for the effect of the above-cloud atmosphere on the observations. The solar bands used in the operational MODIS Terra and Aqua cloud optical and microphysical algorithms (visible, NIR, and SWIR spectral windows) are primarily affected by water vapor, and to a lesser extent by well-mixed gases. For water vapor, the above-cloud column amount, or precipitable water, provides adequate information for an atmospheric correction; details of the vertical vapor distribution are not typically necessary for the level of correction required. Cloud-top pressure has a secondary effect due to pressure broadening influences. For well- mixed gases, cloud-top pressure is also required for estimates of above-cloud abundances. We present a method for obtaining above-cloud precipitable water over dark Ocean surfaces using the MODIS 0.94 pm vapor absorption band. The retrieval includes an iterative procedure for establishing cloud-top temperature and pressure, and is useful for both single layer water and ice clouds. Knowledge of cloud thermodynamic phase is fundamental in retrieving cloud optical and microphysical properties. However, in cases of optically thin cirrus overlapping lower water clouds, the concept of a single unique phase is ill- defined and depends, at least, on the spectral region of interest. We will present a method for multi-layer and multi-phase cloud detection which uses above-cloud precipitable water retrievals along with several existing MODIS operational cloud products (cloud-top pressure derived from a C02 slicing algorithm, IR and SWIR phase retrievals). Results are catagorized by whether the radiative signature in the MODIS solar bands is primarily that of a water cloud with ice cloud contamination, or visa-versa. Examples in polar and mid-latitude regions will be shown.

Evaluation, Calibration and Comparison of the Precipitation-Runoff Modeling System (PRMS) National Hydrologic Model (NHM) Using Moderate Resolution Imaging Spectroradiometer (MODIS) and Snow Data Assimilation System (SNODAS) Gridded Datasets

NASA Astrophysics Data System (ADS)

Norton, P. A., II; Haj, A. E., Jr.

2014-12-01

The United States Geological Survey is currently developing a National Hydrologic Model (NHM) to support and facilitate coordinated and consistent hydrologic modeling efforts at the scale of the continental United States. As part of this effort, the Geospatial Fabric (GF) for the NHM was created. The GF is a database that contains parameters derived from datasets that characterize the physical features of watersheds. The GF was used to aggregate catchments and flowlines defined in the National Hydrography Dataset Plus dataset for more than 100,000 hydrologic response units (HRUs), and to establish initial parameter values for input to the Precipitation-Runoff Modeling System (PRMS). Many parameter values are adjusted in PRMS using an automated calibration process. Using these adjusted parameter values, the PRMS model estimated variables such as evapotranspiration (ET), potential evapotranspiration (PET), snow-covered area (SCA), and snow water equivalent (SWE). In order to evaluate the effectiveness of parameter calibration, and model performance in general, several satellite-based Moderate Resolution Imaging Spectroradiometer (MODIS) and Snow Data Assimilation System (SNODAS) gridded datasets including ET, PET, SCA, and SWE were compared to PRMS-simulated values. The MODIS and SNODAS data were spatially averaged for each HRU, and compared to PRMS-simulated ET, PET, SCA, and SWE values for each HRU in the Upper Missouri River watershed. Default initial GF parameter values and PRMS calibration ranges were evaluated. Evaluation results, and the use of MODIS and SNODAS datasets to update GF parameter values and PRMS calibration ranges, are presented and discussed.

Cloud property datasets retrieved from AVHRR, MODIS, AATSR and MERIS in the framework of the Cloud_cci project

NASA Astrophysics Data System (ADS)

Stengel, Martin; Stapelberg, Stefan; Sus, Oliver; Schlundt, Cornelia; Poulsen, Caroline; Thomas, Gareth; Christensen, Matthew; Carbajal Henken, Cintia; Preusker, Rene; Fischer, Jürgen; Devasthale, Abhay; Willén, Ulrika; Karlsson, Karl-Göran; McGarragh, Gregory R.; Proud, Simon; Povey, Adam C.; Grainger, Roy G.; Fokke Meirink, Jan; Feofilov, Artem; Bennartz, Ralf; Bojanowski, Jedrzej S.; Hollmann, Rainer

2017-11-01

New cloud property datasets based on measurements from the passive imaging satellite sensors AVHRR, MODIS, ATSR2, AATSR and MERIS are presented. Two retrieval systems were developed that include components for cloud detection and cloud typing followed by cloud property retrievals based on the optimal estimation (OE) technique. The OE-based retrievals are applied to simultaneously retrieve cloud-top pressure, cloud particle effective radius and cloud optical thickness using measurements at visible, near-infrared and thermal infrared wavelengths, which ensures spectral consistency. The retrieved cloud properties are further processed to derive cloud-top height, cloud-top temperature, cloud liquid water path, cloud ice water path and spectral cloud albedo. The Cloud_cci products are pixel-based retrievals, daily composites of those on a global equal-angle latitude-longitude grid, and monthly cloud properties such as averages, standard deviations and histograms, also on a global grid. All products include rigorous propagation of the retrieval and sampling uncertainties. Grouping the orbital properties of the sensor families, six datasets have been defined, which are named AVHRR-AM, AVHRR-PM, MODIS-Terra, MODIS-Aqua, ATSR2-AATSR and MERIS+AATSR, each comprising a specific subset of all available sensors. The individual characteristics of the datasets are presented together with a summary of the retrieval systems and measurement records on which the dataset generation were based. Example validation results are given, based on comparisons to well-established reference observations, which demonstrate the good quality of the data. In particular the ensured spectral consistency and the rigorous uncertainty propagation through all processing levels can be considered as new features of the Cloud_cci datasets compared to existing datasets. In addition, the consistency among the individual datasets allows for a potential combination of them as well as facilitates studies on the impact of temporal sampling and spatial resolution on cloud climatologies.

For each dataset a digital object identifier has been issued:

Cloud_cci AVHRR-AM: https://doi.org/10.5676/DWD/ESA_Cloud_cci/AVHRR-AM/V002

Cloud_cci AVHRR-PM: https://doi.org/10.5676/DWD/ESA_Cloud_cci/AVHRR-PM/V002

Cloud_cci MODIS-Terra: https://doi.org/10.5676/DWD/ESA_Cloud_cci/MODIS-Terra/V002

Cloud_cci MODIS-Aqua: https://doi.org/10.5676/DWD/ESA_Cloud_cci/MODIS-Aqua/V002

Cloud_cci ATSR2-AATSR: https://doi.org/10.5676/DWD/ESA_Cloud_cci/ATSR2-AATSR/V002

Cloud_cci MERIS+AATSR: https://doi.org/10.5676/DWD/ESA_Cloud_cci/MERIS+AATSR/V002

[Temporal and spatial variation of MODIS vegetation indices in Hunan Province].

PubMed

Lin, Hui; Xiong, Yu-Jiu; Wan, Ling-Feng; Mo, Deng-Kui; Sun, Hua

2007-03-01

Based on MODIS images and by using the algorithm of maximum value composite (MVC), the monthly vegetation indices (VIs) in 2005 in Hunan Province were obtained. Through the analysis of the MODIS VIs, Hunan Province was divided into six districts to describe the spatial distribution of the VIs, and by using the monthly mean temperature and rainfall data collected from 5 climatic monitoring stations in this province, the temporal variation of the VIs was analyzed. The results showed that the spatial distribution of MODIS VIs was positively correlated with vegetation cover, and appeared regional characteristics. The MODIS VIs varied with season, and the curves of their monthly mean values were downwards opening quadratic parabolas, with the maximum appeared in July. The value of MODIS EVI was smaller than that of MODIS NDVI. MODIS VI was mainly affected by monthly mean temperature, but this effect was decreased with decreasing latitude. The variation pattern of MODIS EVI was more apparent than that of MODIS NDVI, i. e. , the quadratic parabola of MODIS EVI was smoother, going gradually from minimum to maximum and then going down, while that of MODIS NDVI had tiny fluctuations on both sides of the maximum point.

eMODIS: A User-Friendly Data Source

USGS Publications Warehouse

Jenkerson, Calli B.; Maiersperger, Thomas; Schmidt, Gail

2010-01-01

The U.S. Geological Survey's (USGS) Earth Resources Observation and Science (EROS) Center is generating a suite of products called 'eMODIS' based on Moderate Resolution Imaging Spectroradiometer (MODIS) data acquired by the National Aeronautics and Space Administration's (NASA) Earth Observing System (EOS). With a more frequent repeat cycle than Landsat and higher spatial resolutions than the Advanced Very High Resolution Spectroradiometer (AVHRR), MODIS is well suited for vegetation studies. For operational monitoring, however, the benefits of MODIS are counteracted by usability issues with the standard map projection, file format, composite interval, high-latitude 'bow-tie' effects, and production latency. eMODIS responds to a community-specific need for alternatively packaged MODIS data, addressing each of these factors for real-time monitoring and historical trend analysis. eMODIS processes calibrated radiance data (level-1B) acquired by the MODIS sensors on the EOS Terra and Aqua satellites by combining MODIS Land Science Collection 5 Atmospherically Corrected Surface Reflectance production code and USGS EROS MODIS Direct Broadcast System (DBS) software to create surface reflectance and Normalized Difference Vegetation Index (NDVI) products. eMODIS is produced over the continental United States and over Alaska extending into Canada to cover the Yukon River Basin. The 250-meter (m), 500-m, and 1,000-m products are delivered in Geostationary Earth Orbit Tagged Image File Format (Geo- TIFF) and composited in 7-day intervals. eMODIS composites are projected to non-Sinusoidal mapping grids that best suit the geography in their areas of application (see eMODIS Product Description below). For eMODIS products generated over the continental United States (eMODIS CONUS), the Terra (from 2000) and Aqua (from 2002) records are available and continue through present time. eMODIS CONUS also is generated in an expedited process that delivers a 7-day rolling composite, created daily with the most recent 7 days of acquisition, to users monitoring real-time vegetation conditions. eMODIS Alaska is not part of expedited processing, but does cover the Terra mission life (2000-present). A simple file transfer protocol (FTP) distribution site currently is enabled on the Internet for direct download of eMODIS products (ftp://emodisftp.cr.usgs.gov/eMODIS), with plans to expand into an interactive portal environment.

MODIS information, data and control system (MIDACS) level 2 functional requirements

NASA Technical Reports Server (NTRS)

Han, D.; Salomonson, V.; Ormsby, J.; Sharts, B.; Folta, D.; Ardanuy, P.; Mckay, A.; Hoyt, D.; Jaffin, S.; Vallette, B.

1988-01-01

The MODIS Information, Data and Control System (MIDACS) Level 2 Functional Requirements Document establishes the functional requirements for MIDACS and provides a basis for the mutual understanding between the users and the designers of the EosDIS, including the requirements, operating environment, external interfaces, and development plan. In defining the requirements and scope of the system, this document describes how MIDACS will operate as an element of the EOS within the EosDIS environment. This version of the Level 2 Requirements Document follows an earlier release of a preliminary draft version. The sections on functional and performance requirements do not yet fully represent the requirements of the data system needed to achieve the scientific objectives of the MODIS instruments and science teams. Indeed, the team members have not yet been selected and the team has not yet been formed; however, it has been possible to identify many relevant requirements based on the present concept of EosDIS and through interviews and meetings with key members of the scientific community. These requirements have been grouped by functional component of the data system, and by function within each component. These requirements have been merged with the complete set of Level 1 and Level 2 context diagrams, data flow diagrams, and data dictionary.

Assessing the MODIS crop detection algorithm for soybean crop area mapping and expansion in the Mato Grosso state, Brazil.

PubMed

Gusso, Anibal; Arvor, Damien; Ducati, Jorge Ricardo; Veronez, Mauricio Roberto; da Silveira, Luiz Gonzaga

2014-01-01

Estimations of crop area were made based on the temporal profiles of the Enhanced Vegetation Index (EVI) obtained from moderate resolution imaging spectroradiometer (MODIS) images. Evaluation of the ability of the MODIS crop detection algorithm (MCDA) to estimate soybean crop areas was performed for fields in the Mato Grosso state, Brazil. Using the MCDA approach, soybean crop area estimations can be provided for December (first forecast) using images from the sowing period and for February (second forecast) using images from the sowing period and the maximum crop development period. The area estimates were compared to official agricultural statistics from the Brazilian Institute of Geography and Statistics (IBGE) and from the National Company of Food Supply (CONAB) at different crop levels from 2000/2001 to 2010/2011. At the municipality level, the estimates were highly correlated, with R (2) = 0.97 and RMSD = 13,142 ha. The MCDA was validated using field campaign data from the 2006/2007 crop year. The overall map accuracy was 88.25%, and the Kappa Index of Agreement was 0.765. By using pre-defined parameters, MCDA is able to provide the evolution of annual soybean maps, forecast of soybean cropping areas, and the crop area expansion in the Mato Grosso state.

Estimating of gross primary production in an Amazon-Cerrado transitional forest using MODIS and Landsat imagery.

PubMed

Danelichen, Victor H M; Biudes, Marcelo S; Velasque, Maísa C S; Machado, Nadja G; Gomes, Raphael S R; Vourlitis, George L; Nogueira, José S

2015-09-01

The acceleration of the anthropogenic activity has increased the atmospheric carbon concentration, which causes changes in regional climate. The Gross Primary Production (GPP) is an important variable in the global carbon cycle studies, since it defines the atmospheric carbon extraction rate from terrestrial ecosystems. The objective of this study was to estimate the GPP of the Amazon-Cerrado Transitional Forest by the Vegetation Photosynthesis Model (VPM) using local meteorological data and remote sensing data from MODIS and Landsat 5 TM reflectance from 2005 to 2008. The GPP was estimated using Normalized Difference Vegetation Index (NDVI) and Enhanced Vegetation Index (EVI) calculated by MODIS and Landsat 5 TM images. The GPP estimates were compared with measurements in a flux tower by eddy covariance. The GPP measured in the tower was consistent with higher values during the wet season and there was a trend to increase from 2005 to 2008. The GPP estimated by VPM showed the same increasing trend observed in measured GPP and had high correlation and Willmott's coefficient and low error metrics in comparison to measured GPP. These results indicated high potential of the Landsat 5 TM images to estimate the GPP of Amazon-Cerrado Transitional Forest by VPM.

Comparison of MODIS Land Surface Temperature and Air Temperature over the Continental USA Meteorological Stations

NASA Technical Reports Server (NTRS)

Zhang, Ping; Bounoua, Lahouari; Imhoff, Marc L.; Wolfe, Robert E.; Thome, Kurtis

2014-01-01

The National Land Cover Database (NLCD) Impervious Surface Area (ISA) and MODIS Land Surface Temperature (LST) are used in a spatial analysis to assess the surface-temperature-based urban heat island's (UHIS) signature on LST amplitude over the continental USA and to make comparisons to local air temperatures. Air-temperature-based UHIs (UHIA), calculated using the Global Historical Climatology Network (GHCN) daily air temperatures, are compared with UHIS for urban areas in different biomes during different seasons. NLCD ISA is used to define urban and rural temperatures and to stratify the sampling for LST and air temperatures. We find that the MODIS LST agrees well with observed air temperature during the nighttime, but tends to overestimate it during the daytime, especially during summer and in nonforested areas. The minimum air temperature analyses show that UHIs in forests have an average UHIA of 1 C during the summer. The UHIS, calculated from nighttime LST, has similar magnitude of 1-2 C. By contrast, the LSTs show a midday summer UHIS of 3-4 C for cities in forests, whereas the average summer UHIA calculated from maximum air temperature is close to 0 C. In addition, the LSTs and air temperatures difference between 2006 and 2011 are in agreement, albeit with different magnitude.

Alternative Method of On-Orbit Response-Versus-Scan-Angle Characterization for MODIS Reflective Solar Bands

NASA Technical Reports Server (NTRS)

Chen, Hongda; Xiong, Xiaoxiong; Angal, Amit; Geng, Xu; Wu, Aisheng

2016-01-01

The moderate resolution imaging spectroradiometer (MODIS) has 20 reflective solar bands (RSB), covering a spectral range from 0.41 to 2.2 microns, which are calibrated on-orbit using its onboard calibrators, which include a solar diffuser, a solar diffuser stability monitor, and a spectroradiometric calibration assembly. A space view (SV) port is used to provide a background reference and also facilitates near-monthly lunar observations through a spacecraft roll. In every scan, the Earth's surface, SV, and onboard calibrators are viewed via a two-sided scan mirror, the reflectance of which depends on the angle of incidence (AOI) as well as the wavelength of the incident light. Response-versus-scan-angle (RVS) is defined as a dependence function of the scan mirror's reflectance over AOI. An initial RVS for each RSB was measured prelaunch for both Terra and Aqua MODIS. Algorithms have been developed to track the on-orbit RVS variation using the measurements from the onboard calibrators, supplemented with the earth view (EV) trends from pseudoinvariant desert targets obtained at different AOI. Since the mission beginning, the MODIS characterization support team (MCST) has dedicated efforts in evaluating approaches of characterizing the on-orbit RVS. A majority of the approaches focused on fitting the data at each AOI over time and then deriving the relative change at different AOI. The current version of the on-orbit RVS algorithm, as implemented in the collection 6 (C6) level-1B (L1B), is also based on the above rationale. It utilizes the EV response trends from the pseudoinvariant Libyan desert targets to supplement the gain derived from the onboard calibrators. The primary limitation of this approach is the assumption of the temporal stability of these desert sites. Consequently, MCST developed an approach that derives the on-orbit RVS change using measurements from a single desert site, combined with the on-orbit lunar measurements. In addition, the EV and onboard responses are fit first as a function of AOI before fitting temporally in order to eliminate the dependence on the stability of the desert site. Comprehensive comparisons are performed with current C6 RVS results for both Terra and Aqua MODIS. Results demonstrate that this alternative method provides a supplemental means to monitor the on-orbit RVS for MODIS RSB.

The Q Continuum: Encounter with the Cloud Mask

NASA Astrophysics Data System (ADS)

Ackerman, S. A.; Frey, R.; Holz, R.; Philips, C.; Dutcher, S.

2017-12-01

We are developing a common cloud mask for MODIS and VIIRS observations, referred to as the MODIS VIIRS Continuity Mask (MVCM). Our focus is on extending the MODIS-heritage cloud detection approach in order to generate appropriate climate data records for clouds and climate studies. The MVCM is based on heritage from the MODIS cloud mask (MOD35 and MYD35) and employs a series of tests on MODIS reflectances and brightness temperatures. Cloud detection is based on contrasts (i.e., cloud versus background surface) at pixel resolution. The MVCM follows the same approach. These cloud masks use multiple cloud detection tests to indicate the confidence level that the observation is of a clear-sky scene. The outcome of a test ranges from 0 (cloudy) to 1 (clear-sky scene). Because of overlap in the sensitivities of the various spectral tests to the type of cloud, each test is considered in one of several groups. The final cloud mask is determined from the product of the minimum confidence of each group and is referred to as the Q value as defined in Ackerman et al (1998). In MOD35 and MYD35 processing, the Q value is not output, rather predetermined Q values determine the result: If Q ≥ .99 the scene is clear; .95 ≤ Q < .99 the pixel is probably a clear scene, .66 ≤ Q < .95 is probably cloudy and Q < .66 is cloudy. Thus representing Q discretely and not as a continuum. For the MVCM, the numerical value of the Q is output along with the classification of clear, probably clear, probably cloudy, and cloudy. Through comparisons with collocated CALIOP and MODIS observations, we will assess the categorization of the Q values as a function of scene type ). While validation studies have indicated the utility and statistical correctness of the cloud mask approach, the algorithm does not possess immeasurable power and perfection. This comparison will assess the time and space dependence of Q and assure that the laws of physics are followed, at least according to normal human notions. Using CALIOP as representing truth, a receiver operating characteristic curve (ROC) will be analyzed to determine the optimum Q for various scenes and seasons, thus providing a continuum of discriminating thresholds.

Alternative method of on-orbit response-versus-scan-angle characterization for MODIS reflective solar bands

NASA Astrophysics Data System (ADS)

Chen, Hongda; Xiong, Xiaoxiong; Angal, Amit; Geng, Xu; Wu, Aisheng

2016-04-01

The moderate resolution imaging spectroradiometer (MODIS) has 20 reflective solar bands (RSB), covering a spectral range from 0.41 to 2.2 μm, which are calibrated on-orbit using its onboard calibrators, which include a solar diffuser, a solar diffuser stability monitor, and a spectroradiometric calibration assembly. A space view (SV) port is used to provide a background reference and also facilitates near-monthly lunar observations through a spacecraft roll. In every scan, the Earth's surface, SV, and onboard calibrators are viewed via a two-sided scan mirror, the reflectance of which depends on the angle of incidence (AOI) as well as the wavelength of the incident light. Response-versus-scan-angle (RVS) is defined as a dependence function of the scan mirror's reflectance over AOI. An initial RVS for each RSB was measured prelaunch for both Terra and Aqua MODIS. Algorithms have been developed to track the on-orbit RVS variation using the measurements from the onboard calibrators, supplemented with the earth view (EV) trends from pseudoinvariant desert targets obtained at different AOI. Since the mission beginning, the MODIS characterization support team (MCST) has dedicated efforts in evaluating approaches of characterizing the on-orbit RVS. A majority of the approaches focused on fitting the data at each AOI over time and then deriving the relative change at different AOI. The current version of the on-orbit RVS algorithm, as implemented in the collection 6 (C6) level-1B (L1B), is also based on the above rationale. It utilizes the EV response trends from the pseudoinvariant Libyan desert targets to supplement the gain derived from the onboard calibrators. The primary limitation of this approach is the assumption of the temporal stability of these desert sites. Consequently, MCST developed an approach that derives the on-orbit RVS change using measurements from a single desert site, combined with the on-orbit lunar measurements. In addition, the EV and onboard responses are fit first as a function of AOI before fitting temporally in order to eliminate the dependence on the stability of the desert site. Comprehensive comparisons are performed with current C6 RVS results for both Terra and Aqua MODIS. Results demonstrate that this alternative method provides a supplemental means to monitor the on-orbit RVS for MODIS RSB.

MODIS Land Data Products: Generation, Quality Assurance and Validation

NASA Technical Reports Server (NTRS)

Masuoka, Edward; Wolfe, Robert; Morisette, Jeffery; Sinno, Scott; Teague, Michael; Saleous, Nazmi; Devadiga, Sadashiva; Justice, Christopher; Nickeson, Jaime

2008-01-01

The Moderate Resolution Imaging Spectrometer (MODIS) on-board NASA's Earth Observing System (EOS) Terra and Aqua Satellites are key instruments for providing data on global land, atmosphere, and ocean dynamics. Derived MODIS land, atmosphere and ocean products are central to NASA's mission to monitor and understand the Earth system. NASA has developed and generated on a systematic basis a suite of MODIS products starting with the first Terra MODIS data sensed February 22, 2000 and continuing with the first MODIS-Aqua data sensed July 2, 2002. The MODIS Land products are divided into three product suites: radiation budget products, ecosystem products, and land cover characterization products. The production and distribution of the MODIS Land products are described, from initial software delivery by the MODIS Land Science Team, to operational product generation and quality assurance, delivery to EOS archival and distribution centers, and product accuracy assessment and validation. Progress and lessons learned since the first MODIS data were in early 2000 are described.

Remote Sensing of Fires and Smoke from the Earth Observing System MODIS Instrument

NASA Technical Reports Server (NTRS)

Kaufman, Y. J.; Hao, W. M.; Justice, C.; Giglio, L.; Herring, D.; Einaudi, Franco (Technical Monitor)

2001-01-01

The talk will include review of the MODIS (Moderate Resolution Imaging Spectrometer) algorithms and performance e.g. the MODIS algorithm and the changes in the algorithm since launch. Comparison of MODIS and ASTER fire observations. Summary of the fall activity with the Forest Service in use of MODIS data for the fires in the North-West. Validation on the ground of the MODIS fire product.

Application-ready expedited MODIS data for operational land surface monitoring of vegetation condition

USGS Publications Warehouse

Brown, Jesslyn; Howard, Daniel M.; Wylie, Bruce K.; Friesz, Aaron M.; Ji, Lei; Gacke, Carolyn

2015-01-01

Monitoring systems benefit from high temporal frequency image data collected from the Moderate Resolution Imaging Spectroradiometer (MODIS) system. Because of near-daily global coverage, MODIS data are beneficial to applications that require timely information about vegetation condition related to drought, flooding, or fire danger. Rapid satellite data streams in operational applications have clear benefits for monitoring vegetation, especially when information can be delivered as fast as changing surface conditions. An “expedited” processing system called “eMODIS” operated by the U.S. Geological Survey provides rapid MODIS surface reflectance data to operational applications in less than 24 h offering tailored, consistently-processed information products that complement standard MODIS products. We assessed eMODIS quality and consistency by comparing to standard MODIS data. Only land data with known high quality were analyzed in a central U.S. study area. When compared to standard MODIS (MOD/MYD09Q1), the eMODIS Normalized Difference Vegetation Index (NDVI) maintained a strong, significant relationship to standard MODIS NDVI, whether from morning (Terra) or afternoon (Aqua) orbits. The Aqua eMODIS data were more prone to noise than the Terra data, likely due to differences in the internal cloud mask used in MOD/MYD09Q1 or compositing rules. Post-processing temporal smoothing decreased noise in eMODIS data.

Cystatin C is not a good candidate biomarker for HNF1A-MODY.

PubMed

Nowak, Natalia; Szopa, Magdalena; Thanabalasingham, Gaya; McDonald, Tim J; Colclough, Kevin; Skupien, Jan; James, Timothy J; Kiec-Wilk, Beata; Kozek, Elzbieta; Mlynarski, Wojciech; Hattersley, Andrew T; Owen, Katharine R; Malecki, Maciej T

2013-10-01

Cystatin C is a marker of glomerular filtration rate (GFR). Its level is influenced, among the others, by CRP whose concentration is decreased in HNF1A-MODY. We hypothesized that cystatin C level might be altered in HNF1A-MODY. We aimed to evaluate cystatin C in HNF1A-MODY both as a diagnostic marker and as a method of assessing GFR. We initially examined 51 HNF1A-MODY patients, 56 subjects with type 1 diabetes (T1DM), 39 with type 2 diabetes (T2DM) and 43 non-diabetic individuals (ND) from Poland. Subjects from two UK centres were used as replication panels: including 215 HNF1A-MODY, 203 T2DM, 39 HNF4A-MODY, 170 GCK-MODY, 17 HNF1B-MODY and 58 T1DM patients. The data were analysed with additive models, adjusting for gender, age, BMI and estimated GFR (creatinine). In the Polish subjects, adjusted cystatin C level in HNF1A-MODY was lower compared with T1DM, T2DM and ND (p < 0.05). Additionally, cystatin C-based GFR was higher than that calculated from creatinine level (p < 0.0001) in HNF1A-MODY, while the two GFR estimates were similar or cystatin C-based lower in the other groups. In the UK subjects, there were no differences in cystatin C between HNF1A-MODY and the other diabetic subgroups, except HNF1B-MODY. In UK HNF1A-MODY, cystatin C-based GFR estimate was higher than the creatinine-based one (p < 0.0001). Concluding, we could not confirm our hypothesis (supported by the Polish results) that cystatin C level is altered by HNF1A mutations; thus, it cannot be used as a biomarker for HNF1A-MODY. In HNF1A-MODY, the cystatin C-based GFR estimate is higher than the creatinine-based one.

Cervical arthroplasty for moderate to severe disc degeneration: clinical and radiological assessments after a minimum follow-up of 18 months--Pfirrmann grade and cervical arthroplasty.

PubMed

Oh, Chang Hyun; Kim, Do Yeon; Ji, Gyu Yeul; Kim, Yeo Ju; Yoon, Seung Hwan; Hyun, Dongkeun; Kim, Eun Young; Park, Hyeonseon; Park, Hyeong-Chun

2014-07-01

Clinical outcomes and radiologic results after cervical arthroplasty have been reported in many articles, yet relatively few studies after cervical arthroplasty have been conducted in severe degenerative cervical disc disease. Sixty patients who underwent cervical arthroplasty (Mobi-C®) between April 2006 and November 2011 with a minimum follow-up of 18 months were enrolled in this study. Patients were divided into two groups according to Pfirrmann classification on preoperative cervical MR images: group A (Pfirrmann disc grade III, n=38) and group B (Pfirrmann disc grades IV or V, n=22). Visual analogue scale (VAS) scores of neck and arm pain, modified Oswestry Disability Index (mODI) score, and radiological results including cervical range of motion (ROM) were assessed before and after surgery. VAS and mean mODI scores decreased after surgery from 5.1 and 57.6 to 2.7 and 31.5 in group A and from 6.1 and 59.9 to 3.7 and 38.4 in group B, respectively. In both groups, VAS and mODI scores significantly improved postoperatively (p<0.001), although no significant intergroup differences were found. Also, cervical dynamic ROM was preserved or gradually improved up to 18 months after cervical arthroplasty in both groups. Global, segmental and adjacent ROM was similar for both groups during follow-up. No cases of device subsidence or extrusion were recorded. Clinical and radiological results following cervical arthroplasty in patients with severe degenerative cervical disc disease were no different from those in patients with mild degenerative cervical disc disease after 18 months of follow-up.

Quantum Assisted Learning for Registration of MODIS Images

NASA Astrophysics Data System (ADS)

Pelissier, C.; Le Moigne, J.; Fekete, G.; Halem, M.

2017-12-01

The advent of the first large scale quantum annealer by D-Wave has led to an increased interest in quantum computing. However, the quantum annealing computer of the D-Wave is limited to either solving Quadratic Unconstrained Binary Optimization problems (QUBOs) or using the ground state sampling of an Ising system that can be produced by the D-Wave. These restrictions make it challenging to find algorithms to accelerate the computation of typical Earth Science applications. A major difficulty is that most applications have continuous real-valued parameters rather than binary. Here we present an exploratory study using the ground state sampling to train artificial neural networks (ANNs) to carry out image registration of MODIS images. The key idea to using the D-Wave to train networks is that the quantum chip behaves thermally like Boltzmann machines (BMs), and BMs are known to be successful at recognizing patterns in images. The ground state sampling of the D-Wave also depends on the dynamics of the adiabatic evolution and is subject to other non-thermal fluctuations, but the statistics are thought to be similar and ANNs tend to be robust under fluctuations. In light of this, the D-Wave ground state sampling is used to define a Boltzmann like generative model and is investigated to register MODIS images. Image intensities of MODIS images are transformed using a Discrete Cosine Transform and used to train a several layers network to learn how to align images to a reference image. The network layers consist of an initial sigmoid layer acting as a binary filter of the input followed by a strict binarization using Bernoulli sampling, and then fed into a Boltzmann machine. The output is then classified using a soft-max layer. Results are presented and discussed.

Mapping wood density globally using remote sensing and climatological data

NASA Astrophysics Data System (ADS)

Moreno, A.; Camps-Valls, G.; Carvalhais, N.; Kattge, J.; Robinson, N.; Reichstein, M.; Allred, B. W.; Running, S. W.

2017-12-01

Wood density (WD) is defined as the oven-dry mass divided by fresh volume, varies between individuals, and describes the carbon investment per unit volume of stem. WD has been proven to be a key functional trait in carbon cycle research and correlates with numerous morphological, mechanical, physiological, and ecological properties. In spite of the utility and importance of this trait, there is a lack of an operational framework to spatialize plant WD measurements at a global scale. In this work, we present a consistent modular processing chain to derive global maps (500 m) of WD using modern machine learning techniques along with optical remote sensing data (MODIS/Landsat) and climate data using the Google Earth Engine platform. The developed approach uses a hierarchical Bayesian approach to fill in gaps in the plant measured WD data set to maximize its global representativeness. WD plant species are then aggregated to Plant Functional Types (PFT). The spatial abundance of PFT at 500 m spatial resolution (MODIS) is calculated using a high resolution (30 m) PFT map developed using Landsat data. Based on these PFT abundances, representative WD values are estimated for each MODIS pixel with nearby measured data. Finally, random forests are used to globally estimate WD from these MODIS pixels using remote sensing and climate. The validation and assessment of the applied methods indicate that the model explains more than 72% of the spatial variance of the calculated community aggregated WD estimates with virtually unbiased estimates and low RMSE (<15%). The maps thus offer new opportunities to study and analyze the global patterns of variation of WD at an unprecedented spatial coverage and spatial resolution.

Characterize Aerosols from MODIS/MISR/OMI/MERRA-2: Dynamic Image Browse Perspective

NASA Astrophysics Data System (ADS)

Wei, J. C.; Yang, W.; Shen, S.; Zhao, P.; Albayrak, A.; Johnson, J. E.; Kempler, S. J.; Pham, L.

2016-12-01

Among the known atmospheric constituents, aerosols still represent the greatest uncertainty in climate research. To understand the uncertainty is to bring altogether of observational (in-situ and remote sensing) and modeling datasets and inter-compare them synergistically for a wide variety of applications that can bring far-reaching benefits to the science community and the broader society. These benefits can best be achieved if these earth science data (satellite and modeling) are well utilized and interpreted. Unfortunately, this is not always the case, despite the abundance and relative maturity of numerous satellite-borne sensors routinely measure aerosols. There is often disagreement between similar aerosol parameters retrieved from different sensors, leaving users confused as to which sensors to trust for answering important science questions about the distribution, properties, and impacts of aerosols. NASA Goddard Earth Sciences Data and Information Services Center (GES DISC) have developed multiple MAPSS (Multi-sensor Aerosol Products Sampling System) applications as a part of Giovanni (Geospatial Interactive Online Visualization and Analysis Interface) data visualization and analysis tool since 2007. The MAPSS database provides spatio-temporal statistics for multiple spatial spaceborne Level 2 aerosol products (MODIS Terra, MODIS Aqua, MISR, POLDER, OMI, CALIOP, SeaWiFS Deep Blue, and VIIRS) sampled over AERONET ground stations. In this presentation, I will demonstrate a new visualization service (NASA Level 2 Data Quality Visualization, DQViz) supporting various visualization and data accessing capabilities from satellite Level 2 (MODIS/MISR/OMI) and long term assimilated aerosols from NASA Modern-Era Retrospective analysis for Research and Applications, Version 2 (MERRA-2 displaying at their own native physical-retrieved spatial resolution. Functionality will include selecting data sources (e.g., multiple parameters under the same measurement), defining area-of-interest and temporal extents, zooming, panning, overlaying, sliding, and data subsetting and reformatting.

MODIS-based spatiotemporal patterns of soil moisture and evapotranspiration interactions in Tampa Bay urban watershed

NASA Astrophysics Data System (ADS)

Chang, Ni-Bin; Xuan, Zhemin; Wimberly, Brent

2011-09-01

Soil moisture and evapotranspiration (ET) is affected by both water and energy balances in the soilvegetation- atmosphere system, it involves many complex processes in the nexus of water and thermal cycles at the surface of the Earth. These impacts may affect the recharge of the upper Floridian aquifer. The advent of urban hydrology and remote sensing technologies opens new and innovative means to undertake eventbased assessment of ecohydrological effects in urban regions. For assessing these landfalls, the multispectral Moderate Resolution Imaging Spectroradiometer (MODIS) remote sensing images can be used for the estimation of such soil moisture change in connection with two other MODIS products - Enhanced Vegetation Index (EVI), Land Surface Temperature (LST). Supervised classification for soil moisture retrieval was performed for Tampa Bay area on the 2 kmx2km grid with MODIS images. Machine learning with genetic programming model for soil moisture estimation shows advances in image processing, feature extraction, and change detection of soil moisture. ET data that were derived by Geostationary Operational Environmental Satellite (GOES) data and hydrologic models can be retrieved from the USGS web site directly. Overall, the derived soil moisture in comparison with ET time series changes on a seasonal basis shows that spatial and temporal variations of soil moisture and ET that are confined within a defined region for each type of surfaces, showing clustered patterns and featuring space scatter plot in association with the land use and cover map. These concomitant soil moisture patterns and ET fluctuations vary among patches, plant species, and, especially, location on the urban gradient. Time series plots of LST in association with ET, soil moisture and EVI reveals unique ecohydrological trends. Such ecohydrological assessment can be applied for supporting the urban landscape management in hurricane-stricken regions.

[Maturity onset diabetes of the young (MODY) - screening, diagnostic and therapy].

PubMed

Kaser, Susanne; Resl, Michael

2016-04-01

Maturity onset diabetes of the young (MODY) is a group of monogenetic diabetes types affecting up to 2% all known diabetics. Transcription factor MODY (HNF1α, HNF4α), the most frequent forms of MODY, allow treatment with sulfonylureas, mutations of glucokinase (GCK-MODY) usually do not require any therapy. Especially in younger patients correct diagnosis of MODY often results in discontinuation of insulin therapy and initiation of a sulfonylurea. Accordingly, in patients with diabetes onset below age of 25 years, with a positive family history for diabetes and negative autoantibodies screening for MODY is recommended.

Sensitivity of Aerosol Multi-Sensor Daily Data Intercomparison to the Level 3 Dataday Definition

NASA Technical Reports Server (NTRS)

Leptoukh, Gregory; Lary, David; Shen, Suhung; Lynnes, Christopher

2010-01-01

Topics include: why people use Level 3 products, why someone might go wrong with Level 3 products, differences in L3 from different sensors, Level 3 data day definition, MODIS vs. MODIS, AOD MODIS Terra vs. Aqua in Pacific, AOD Aqua MODIS vs. MISR correlation map, MODIS vs MISR on Terra, MODIS atmospheric data day definition, orbit time difference for Terra and Aqua 2009-01-06, maximum time difference for Terra (Calendar day), artifact explains, data day definitions, local time distribution, spatial (local time) data day definition, maximum time difference between Terra and Aqua, Removing the artifact in 16-day AOD correlation, MODIS cloud top pressure, and MODIS Terra and Aqua vs. AIRS cloud top pressure.

Quantitative Evaluation of Serum Proteins Uncovers a Protein Signature Related to Maturity-Onset Diabetes of the Young (MODY).

PubMed

Tuerxunyiming, Muhadasi; Xian, Feng; Zi, Jin; Yimamu, Yilihamujiang; Abuduwayite, Reshalaiti; Ren, Yan; Li, Qidan; Abudula, Abulizi; Liu, SiQi; Mohemaiti, Patamu

2018-01-05

Maturity-onset diabetes of the young (MODY) is an inherited monogenic type of diabetes. Genetic mutations in MODY often cause nonsynonymous changes that directly lead to the functional distortion of proteins and the pathological consequences. Herein, we proposed that the inherited mutations found in a MODY family could cause a disturbance of protein abundance, specifically in serum. The serum samples were collected from a Uyghur MODY family through three generations, and the serum proteins after depletion treatment were examined by quantitative proteomics to characterize the MODY-related serum proteins followed by verification using target quantification of proteomics. A total of 32 serum proteins were preliminarily identified as the MODY-related. Further verification test toward the individual samples demonstrated the 12 candidates with the significantly different abundance in the MODY patients. A comparison of the 12 proteins among the sera of type 1 diabetes, type 2 diabetes, MODY, and healthy subjects was conducted and revealed a protein signature related with MODY composed of the serum proteins such as SERPINA7, APOC4, LPA, C6, and F5.

Progress towards NASA MODIS and Suomi NPP Cloud Property Data Record Continuity

NASA Astrophysics Data System (ADS)

Platnick, S.; Meyer, K.; Holz, R.; Ackerman, S. A.; Heidinger, A.; Wind, G.; Platnick, S. E.; Wang, C.; Marchant, B.; Frey, R.

2017-12-01

The Suomi NPP VIIRS imager provides an opportunity to extend the 17+ year EOS MODIS climate data record into the next generation operational era. Similar to MODIS, VIIRS provides visible through IR observations at moderate spatial resolution with a 1330 LT equatorial crossing consistent with the MODIS on the Aqua platform. However, unlike MODIS, VIIRS lacks key water vapor and CO2 absorbing channels used for high cloud detection and cloud-top property retrievals. In addition, there is a significant mismatch in the spectral location of the 2.2 μm shortwave-infrared channels used for cloud optical/microphysical retrievals and cloud thermodynamic phase. Given these instrument differences between MODIS EOS and VIIRS S-NPP/JPSS, a merged MODIS-VIIRS cloud record to serve the science community in the coming decades requires different algorithm approaches than those used for MODIS alone. This new approach includes two parallel efforts: (1) Imager-only algorithms with only spectral channels common to VIIRS and MODIS (i.e., eliminate use of MODIS CO2 and NIR/IR water vapor channels). Since the algorithms are run with similar spectral observations, they provide a basis for establishing a continuous cloud data record across the two imagers. (2) Merged imager and sounder measurements (i.e.., MODIS-AIRS, VIIRS-CrIS) in lieu of higher-spatial resolution MODIS absorption channels absent on VIIRS. The MODIS-VIIRS continuity algorithm for cloud optical property retrievals leverages heritage algorithms that produce the existing MODIS cloud mask (MOD35), optical and microphysical properties product (MOD06), and the NOAA AWG Cloud Height Algorithm (ACHA). We discuss our progress towards merging the MODIS observational record with VIIRS in order to generate cloud optical property climate data record continuity across the observing systems. In addition, we summarize efforts to reconcile apparent radiometric biases between analogous imager channels, a critical consideration for obtaining inter-sensor climate data record continuity.

Toward Unified Satellite Climatology of Aerosol Properties. 3. MODIS Versus MISR Versus AERONET

NASA Technical Reports Server (NTRS)

Mishchenko, Michael I.; Liu, Li; Geogdzhayev, Igor V.; Travis, Larry D.; Cairns, Brian; Lacis, Andrew A.

2010-01-01

We use the full duration of collocated pixel-level MODIS-Terra and MISR aerosol optical thickness (AOT) retrievals and level 2 cloud-screened quality-assured AERONET measurements to evaluate the likely individual MODIS and MISR retrieval accuracies globally over oceans and land. We show that the use of quality-assured MODIS AOTs as opposed to the use of all MODIS AOTs has little effect on the resulting accuracy. The MODIS and MISR relative standard deviations (RSTDs) with respect to AERONET are remarkably stable over the entire measurement record and reveal nearly identical overall AOT performances of MODIS and MISR over the entire suite of AERONET sites. This result is used to evaluate the likely pixel-level MODIS and MISR performances on the global basis with respect to the (unknown) actual AOTs. For this purpose, we use only fully compatible MISR and MODIS aerosol pixels. We conclude that the likely RSTDs for this subset of MODIS and MISR AOTs are 73% over land and 30% over oceans. The average RSTDs for the combined [AOT(MODIS)+AOT(MISR)]/2 pixel-level product are close to 66% and 27%, respectively, which allows us to recommend this simple blend as a better alternative to the original MODIS and MISR data. These accuracy estimates still do not represent the totality of MISR and quality-assured MODIS pixel-level AOTs since an unaccounted for and potentially significant source of errors is imperfect cloud screening. Furthermore, many collocated pixels for which one of the datasets reports a retrieval, whereas the other one does not may also be problematic.

Evaluation and Intercomparison of MODIS and GEOV1 Global Leaf Area Index Products over Four Sites in North China

PubMed Central

Li, Zhenwang; Tang, Huan; Zhang, Baohui; Yang, Guixia; Xin, Xiaoping

2015-01-01

This study investigated the performances of the Moderate Resolution Imaging Spectroradiometer (MODIS) and GEOLAND2 Version 1 (GEOV1) Leaf Area Index (LAI) products using ground measurements and LAI reference maps over four sites in North China for 2011–2013. The Terra + Aqua MODIS and Terra MODIS LAI retrieved by the main algorithm and GEOV1 LAI within the valid range were evaluated and intercompared using LAI reference maps to assess their uncertainty and seasonal variability The results showed that GEOV1 LAI is the most similar product with the LAI reference maps (R2 = 0.78 and RMSE = 0.59). The MODIS products performed well for biomes with low LAI values, but considerable uncertainty arose when the LAI was larger than 3. Terra + Aqua MODIS (R2 = 0.72 and RMSE = 0.68) was slightly more accurate than Terra MODIS (R2 = 0.57 and RMSE = 0.90) for producing slightly more successful observations. Both MODIS and GEOV1 products effectively followed the seasonal trajectory of the reference maps, and GEOV1 exhibited a smoother seasonal trajectory than MODIS. MODIS anomalies mainly occurred during summer and likely occurred because of surface reflectance uncertainty, shorter temporal resolutions and inconsistency between simulated and MODIS surface reflectances. This study suggests that further improvements of the MODIS LAI products should focus on finer algorithm inputs and improved seasonal variation modeling of MODIS observations. Future field work considering finer biome maps and better generation of LAI reference maps is still needed. PMID:25781509

MODIS comparisons with northeastern Pacific in situ stratocumulus microphysics

NASA Astrophysics Data System (ADS)

Noble, Stephen R.; Hudson, James G.

2015-08-01

Vertical sounding measurements within stratocumuli during two aircraft field campaigns, Marine Stratus/stratocumulus Experiment (MASE) and Physics of Stratocumulus Top (POST), are used to validate Moderate Resolution Imaging Spectroradiometer (MODIS) cloud optical thickness (COT), cloud liquid water path (LWP), and cloud effective radius (re). In situ COT, LWP, and re were calculated using 5 m vertically averaged droplet probe measurements of complete vertical cloud penetrations. MODIS COT, LWP, and re 1 km pixels were averaged along these penetrations. COT comparisons in POST showed strong correlations and a near 1:1 relationship. In MASE, comparisons showed strong correlations; however, MODIS COT exceeded in situ COT, likely due to larger temporal differences between MODIS and in situ measurements. LWP comparisons between two cloud probes show good agreement for POST but not MASE, giving confidence to POST data. Both projects provided strong LWP correlations but MODIS exceeded in situ by 14-36%. MODIS in situ re correlations were strong, but MODIS 2.1 µm re exceeded in situ re, which contributed to LWP bias; in POST, MODIS re was 20-30% greater than in situ re. Maximum in situ re near cloud top showed comparisons nearer 1:1. Other MODIS re bands (3.7 µm and 1.6 µm) showed similar comparisons. Temporal differences between MODIS and in situ measurements, airplane speed differences, and cloud probe artifacts were likely causes of weaker MASE correlations. POST COT comparison was best for temporal differences under 20 min. POST data validate MODIS COT but it also implies a positive MODIS re bias that propagates to LWP while still capturing variability.

Effect of Cloud Fraction on Near-Cloud Aerosol Behavior Based on MODIS and CALIPSO Observations

NASA Technical Reports Server (NTRS)

Marshak, A.; Varnai, T.; Yang, W.

2015-01-01

Organizers of the MODIS-VIIRS Science Team Meeting, held May 18-22, 2015 in Silver Spring, MD plan to post the presentations and posters to the NASA MODIS website: http:modis.gsfc.nasa.govsci_teammeetings201505index.php. The MODIS Science Team Meeting is held twice a year, so that the members of the science team may assemble and discuss data they have collected, ideas they have formed, and future issues that apply to the MODIS Mission.

MODIS calibration

NASA Technical Reports Server (NTRS)

Barker, John L.

1992-01-01

The MODIS/MCST (MODIS Characterization Support Team) Status Report contains an outline of the calibration strategy, handbook, and plan. It also contains an outline of the MODIS/MCST action item from the 4th EOS Cal/Val Meeting, for which the objective was to locate potential MODIS calibration targets on the Earth's surface that are radiometrically homogeneous on a scale of 3 by 3 Km. As appendices, draft copies of the handbook table of contents, calibration plan table of contents, and detailed agenda for MODIS calibration working group are included.

No novel, high penetrant gene might remain to be found in Japanese patients with unknown MODY.

PubMed

Horikawa, Yukio; Hosomichi, Kazuyoshi; Enya, Mayumi; Ishiura, Hiroyuki; Suzuki, Yutaka; Tsuji, Shoji; Sugano, Sumio; Inoue, Ituro; Takeda, Jun

2018-07-01

MODY 5 and 6 have been shown to be low-penetrant MODYs. As the genetic background of unknown MODY is assumed to be similar, a new analytical strategy is applied here to elucidate genetic predispositions to unknown MODY. We examined to find whether there are major MODY gene loci remaining to be identified using SNP linkage analysis in Japanese. Whole-exome sequencing was performed with seven families with typical MODY. Candidates for novel MODY genes were examined combined with in silico network analysis. Some peaks were found only in either parametric or non-parametric analysis; however, none of these peaks showed a LOD score greater than 3.7, which is approved to be the significance threshold of evidence for linkage. Exome sequencing revealed that three mutated genes were common among 3 families and 42 mutated genes were common in two families. Only one of these genes, MYO5A, having rare amino acid mutations p.R849Q and p.V1601G, was involved in the biological network of known MODY genes through the intermediary of the INS. Although only one promising candidate gene, MYO5A, was identified, no novel, high penetrant MODY genes might remain to be found in Japanese MODY.

GCK gene mutations are a common cause of childhood-onset MODY (maturity-onset diabetes of the young) in Turkey.

PubMed

Haliloglu, Belma; Hysenaj, Gerald; Atay, Zeynep; Guran, Tulay; Abalı, Saygın; Turan, Serap; Bereket, Abdullah; Ellard, Sian

2016-09-01

Inactivating heterozygous mutations in the GCK gene are a common cause of MODY and result in mild fasting hyperglycaemia, which does not require treatment. We aimed to identify the frequency, clinical and molecular features of GCK mutations in a Turkish paediatric cohort. Fifty-four unrelated probands were selected based on the following criteria: age of diagnosis ≤17 years, family history of diabetes in at least two generations, anti-GAD/ICA negative, BMI<95.p and follow-up with diet, oral antidiabetic drug or low-dose insulin treatment (≤0·5U/kg/d). A MODY probability score (www.diabetesgenes.org) was calculated and 21 patients with a score ≥75%, HbA1c levels ≤7·5% (58·5 mmol/mol) and fasting blood glucose (FBG) levels 99-145 mg/dl (5·5-8·0 mmol/l) were selected for Sanger sequencing of the GCK gene. Targeted next-generation sequencing for all known monogenic diabetes genes was undertaken for any patient without a GCK gene mutation. GCK gene mutations (pathogenic or likely pathogenic variants) and a novel intronic variant of uncertain significance (c.208 + 3A>T) were identified in 13/54 probands (24%). Twelve of these patients had a MODY probability score ≥75%. FBG level and 2-h glucose level in OGTT were 123 ± 14 mg/dl (6·8 ± 0·7 mmol/l) (107-157 mg/dl) and 181 ± 30 mg/dl (10·1 ± 1·6 mmol/l) (136-247 mg/dl), respectively. Average of glucose increment in OGTT was 58 ± 27 mg/dl (3·2 ± 1·5 mmol/l) (19-120 mg/dl), and mean HbA1c level was 6·5 ± 0·5% (47·5 ± 5·5 mmol/mol) (5·9-7·6%). Five novel missense mutations were identified (p.F123S, p.L58P, p.G246A, p.F419C, and p.S151C). Two patients treated with low-dose insulin before the molecular analysis were able to stop treatment. Approximately 1 in 4 MODY cases in this Turkish paediatric cohort have a GCK mutation. Selection of patients for GCK gene analysis using the MODY probability score was an effective way of identifying most (11/12) patients with a GCK mutation. © 2016 The Authors. Clinical Endocrinology Published by John Wiley & Sons Ltd.

Improving Access to MODIS Biophysical Science Products for NACP Investigators

NASA Technical Reports Server (NTRS)

Wolfe, Robert E.; Gao, Feng; Morisette, Jeffrey T.; Ederer, Gregory A.; Pedelty, Jeffrey A.

2007-01-01

MODIS 4 NACP is a NASA-funded project supporting the North American Carbon Program (NACP). The purpose of this Advancing Collaborative Connections for Earth-Sun System Science (ACCESS) project is to provide researchers with Moderate Resolution Imaging Spectroradiometer (MODIS) biophysical data products that are custom tailored for use in NACP model studies. Standard MODIS biophysical products provide used to improve our understanding on the climate and ecosystem changes. However, direct uses of the MODIS biophysical parameters are constrained by retrieval quality and cloud contamination. Another challenge that NACP users face is acquiring MODIS data in formats and at spatial-temporal resolutions consistent with other data sets they use. We have been working closely with key NACP users to tailor the MODIS products to fit their needs. First, we provide new temporally smoothed and spatially continuous MODIS biophysical data sets. Second, we are distributing MODIS data at suitable spatial-temporal resolutions and in formats consistent with other data integration into model studies.

Challenges of flood monitoring in the Senegal river valley using multi-temporal data

NASA Astrophysics Data System (ADS)

Bruckmann, Laurent; Delbart, Nicolas

2017-04-01

In Sub-Saharan Africa, floodplains wetlands play an important role for livelihoods and economy, especially for agriculture and fishing. However, tropical rivers flows are increasingly modified by climate change and dam regulation. In the Senegal river valley, the annual flood, from August to November, is an important water resources creating ecosystems services for people. Senegal river basin face to hydrological changes, due to rainfall diminution during the 1970's and building of large dams during 1980's to secure water resources. Water management and development of irrigation have modified the floodplain functioning. Flood recession agriculture, grazing and fishing are now confronted to a high uncertainty about floods level, duration and extension. Thus, spatiotemporal information of flood extension and duration are important for local communities and stakeholders to ensure food security and ecosystems services. Multi-temporal satellite data demonstrates an important applicability for flood mapping. Aims of this work is to present potentiality of using multi-temporal data from MODIS and new satellite Sentinel-2 for flood monitoring in a Sahelian context. It will also discuss the potential of flood mapping for the analysis of the dynamics of riparian vegetation and flood recession agriculture. This study uses two datasets to explore flood monitoring in Senegal river valley. Firstly, MODIS 8-days data (MOD09A) are first used, because of its temporal resolution of 8 days covering the period from 2000 to 2016. However, MODIS data are limited due to a low spatial resolution, that's why we also use Sentinel-2 data, available since summer 2015. The data were processed by constructing NDWI time-series (NDWI threshold is empirically defined) and extracting NDWI values for each inundated pixel during flood. First results demonstrate that using MODIS on a large scale is enough for analyze interannual variability of the flooded surfaces. We present here maps of flood frequency of the pixels between 2000 and 2016. MODIS spatial resolution is insufficient to analyze the interaction between flood hydrology and vegetation dynamics, whereas flood monitoring by Sentinel data seems to offer better potential. We illustrate our observations through a cartographic example of these interactions at local scale in Senegal river floodplain.

Dynamics of limnological parameters in reservoirs: A case study in South Brazil using remote sensing and meteorological data.

PubMed

Breunig, Fábio Marcelo; Pereira Filho, Waterloo; Galvão, Lênio Soares; Wachholz, Flávio; Cardoso, Maria Angélica Gonçalves

2017-01-01

Reservoirs are important in Brazil for the production of hydroelectric power and human water consumption. The objective was to evaluate the variability of total suspended solids (TSS) and chlorophyll-a as well as the rainfall/temperature and land use impacts on these optically active constituents (OAC). The study area is the Passo Real reservoir in south Brazil. The methodology was divided in four steps. First, we used wavelet to detect anomalous periods of rainfall and temperature (2002-2014). Second, we carried out 12 field campaigns to obtain in situ measurements for limnological characterization (2009-2010). The third step was the analysis of Moderate Resolution Imaging Spectroradiometer (MODIS)/Terra and Aqua satellites data corrected and non-corrected for bidirectional effects. Finally, we evaluated potential drivers of OAC changes over time using cross-correlation analysis. The results showed a decrease in the TSS and chlorophyll-a concentrations from the upper to the lower streams of the reservoir. The exponential regression between the MODIS red reflectance and TSS had an adjusted r 2 of 0.63. It decreased to 0.53 for the relationship between the green reflectance and chlorophyll-a. MODIS data corrected for bidirectional effects provided better OAC estimates than non-corrected data. The validation of MODIS TSS and chlorophyll-a estimates using a separate set of measurements showed a RMSE of 2.98mg/l and 2.33μg/l, respectively. MODIS estimates indicated a gradual transition in OAC from the upper to the lower streams in agreement with the patterns observed using field limnological data. The analysis of land use (greenness) showed two well-defined crop cycles per year. The highest seasonal concentrations of TSS and chlorophyll-a were observed in December and the lowest concentrations in April. Despite the interrelationships between both factors, our cross-correlation analysis indicated that the great concentrations of TSS and chlorophyll-a were primarily controlled by rainfall and secondarily by land use. Copyright © 2016 Elsevier B.V. All rights reserved.

A global hydrographic array for early detection of floods and droughts

NASA Astrophysics Data System (ADS)

Brakenridge, G.; Nghiem, S.; Caquard, S.

An array of over 700 20 km-long river gaging reaches, distributed world-wide, is imaged by the SeaWinds radar scatterometer aboard QuikSCAT every 2.5 days. Strongly negative HH/VV polarity ratios indicate large amounts of surface water. We set individual reach thresholds so that the transition from bankfull to overbank river flow can be identified according to changes in this ratio. Similarly, the wide-swath MODIS optical sensors provide frequent repeat coverage of the reaches at much higher spatial resolution (250 m). In this case, several reach water surface area thresholds can be identified: low flow or drought conditions, normal in-channel flow, overbank flow, and extreme flood conditions. Sustained data collection for the reaches by both sensors allows the radar response to changing surface water to be defined, and allows evaluation of the sensitivity of the MODIS data to river discharge changes. New approaches, such as ``unmixing'' analysis of mixed water/land MODIS pixels can extend detection limits to smaller rivers and streams. It is now possible for wide-area, frequent revisit terrestrial remote sensing to provide human society with early warning of both floods and droughts and by direct observation of the runoff component of the Earth's hydrologic cycle. Examples of both radar and optical approaches towards this end are at the web sites below: http://www.dartmouth.edu/˜ floods/Modisrapidresponse.html http://www.dartmouth.edu/˜ floods/sensorweb/SensorWebindex.html http://www.dartmouth.edu/˜ floods/Quikscat/Regional2/CurrentTisza.jpg} In particular, early flood detection results are obtained over an extensive region in eastern Europe including the Tisza River basin, Romania, Hungary, and adjacent nations. Flood detection maps are updated weekly at the web site. The combination of QuikSCAT and MODIS takes advantage of the large-area coverage of these sensors together with the high temporal resolution of QuikSCAT and the high spatial resolution of MODIS. Such capabilities are also appropriate for early flood detection in Asian monsoon regions including India, Pakistan, Bangladesh, China, and southeast Asia.

MODIS comparisons with northeastern Pacific in situ stratocumulus microphysics

PubMed Central

Noble, Stephen R.

2015-01-01

Abstract Vertical sounding measurements within stratocumuli during two aircraft field campaigns, Marine Stratus/stratocumulus Experiment (MASE) and Physics of Stratocumulus Top (POST), are used to validate Moderate Resolution Imaging Spectroradiometer (MODIS) cloud optical thickness (COT), cloud liquid water path (LWP), and cloud effective radius (r e). In situ COT, LWP, and r e were calculated using 5 m vertically averaged droplet probe measurements of complete vertical cloud penetrations. MODIS COT, LWP, and r e 1 km pixels were averaged along these penetrations. COT comparisons in POST showed strong correlations and a near 1:1 relationship. In MASE, comparisons showed strong correlations; however, MODIS COT exceeded in situ COT, likely due to larger temporal differences between MODIS and in situ measurements. LWP comparisons between two cloud probes show good agreement for POST but not MASE, giving confidence to POST data. Both projects provided strong LWP correlations but MODIS exceeded in situ by 14–36%. MODIS in situ r e correlations were strong, but MODIS 2.1 µm r e exceeded in situ r e, which contributed to LWP bias; in POST, MODIS r e was 20–30% greater than in situ r e. Maximum in situ r e near cloud top showed comparisons nearer 1:1. Other MODIS r e bands (3.7 µm and 1.6 µm) showed similar comparisons. Temporal differences between MODIS and in situ measurements, airplane speed differences, and cloud probe artifacts were likely causes of weaker MASE correlations. POST COT comparison was best for temporal differences under 20 min. POST data validate MODIS COT but it also implies a positive MODIS r e bias that propagates to LWP while still capturing variability. PMID:27708990

MODIS comparisons with northeastern Pacific in situ stratocumulus microphysics

DOE PAGES

Noble, Stephen R.; Hudson, James G.

2015-07-22

Here, vertical sounding measurements within stratocumuli during two aircraft field campaigns, Marine Stratus/stratocumulus Experiment (MASE) and Physics of Stratocumulus Top (POST), are used to validate Moderate Resolution Imaging Spectroradiometer (MODIS) cloud optical thickness (COT), cloud liquid water path (LWP), and cloud effective radius (r e). In situ COT, LWP, and r e were calculated using 5 m vertically averaged droplet probe measurements of complete vertical cloud penetrations. MODIS COT, LWP, and r e 1 km pixels were averaged along these penetrations. COT comparisons in POST showed strong correlations and a near 1:1 relationship. In MASE, comparisons showed strong correlations; however,more » MODIS COT exceeded in situ COT, likely due to larger temporal differences between MODIS and in situ measurements. LWP comparisons between two cloud probes show good agreement for POST but not MASE, giving confidence to POST data. Both projects provided strong LWP correlations but MODIS exceeded in situ by 14–36%. MODIS in situ r e correlations were strong, but MODIS 2.1 µm r e exceeded in situ r e, which contributed to LWP bias; in POST, MODIS r e was 20–30% greater than in situ r e. Maximum in situ r e near cloud top showed comparisons nearer 1:1. Other MODIS r e bands (3.7 µm and 1.6 µm) showed similar comparisons. Temporal differences between MODIS and in situ measurements, airplane speed differences, and cloud probe artifacts were likely causes of weaker MASE correlations. POST COT comparison was best for temporal differences under 20 min. POST data validate MODIS COT but it also implies a positive MODIS r e bias that propagates to LWP while still capturing variability.« less

Geospatiotemporal Data Mining of Remotely Sensed Phenology for Unsupervised Forest Threat Detection

NASA Astrophysics Data System (ADS)

Mills, R. T.; Hoffman, F. M.; Kumar, J.; Vulli, S. S.; Hargrove, W. W.; Spruce, J.

2010-12-01

Hargrove and Hoffman have previously developed and applied a scalable geospatiotemporal data mining approach to define a set of categorical, multivariate classes or states for describing and tracking the behavior of ecosystem properties through time within a multi-dimensional phase or state space. The method employs a standard k-means cluster analysis with enhancements that reduce the number of required comparisons, dramatically accelerating iterative convergence. In support of efforts by the USDA Forest Service to develop a National Early Warning System for Forest Disturbances, we have applied this geospatiotemporal cluster analysis procedure to annual phenology patterns derived from Moderate Resolution Imaging Spectroradiometer (MODIS) Normalized Difference Vegetation Index (NDVI) for unsupervised change detection. We will present initial results from the analysis of seven years of 250-m MODIS NDVI data for the conterminous United States. While determining what constitutes a "normal" phenological pattern for any given location is challenging due to interannual climate variability, a spatially varying climate change trend, and the relatively short record of MODIS NDVI observations, these results demonstrate the utility of the method for detecting significant mortality events, like the progressive damage from mountain pine beetle, and suggest that the technique may be successfully implemented as a key component in an early warning system for identifying forest threats from natural and anthropogenic disturbances at a continental scale.

A Prototype MODI- SSM/I Snow Mapping Algorithm

NASA Technical Reports Server (NTRS)

Tait, Andrew B.; Barton, Jonathan S.; Hall, Dorothy K.

1999-01-01

Data in the wavelength range 0.545 - 1.652 microns from the Moderate Resolution Imaging Spectroradiometer (MODIS), to be launched aboard the Earth Observing System (EOS) Terra in the fall of 1999, will be used to map daily global snow cover at 500m resolution. However, during darkness, or when the satellite's view of the surface is obscured by cloud, snow cover cannot be mapped using MODIS data. We show that during these conditions, it is possible to supplement the MODIS product by mapping the snow cover using passive microwave data from the Special Sensor Microwave Imager (SSM/I), albeit with much poorer resolution. For a 7-day time period in March 1999, a prototype MODIS snow-cover product was compared with a prototype MODIS-SSM/I product for the same area in the mid-western United States. The combined MODIS-SSM/I product mapped 9% more snow cover than the MODIS-only product.

Retrieval of Aerosol Properties from MODIS Terra, MODIS Aqua, and VIIRS SNPP: Calibration Focus

NASA Technical Reports Server (NTRS)

Levy, Robert C.; Mattoo, Shana; Sawyer, Virginia; Kleidman, Richard; Patadia, Falguni; Zhou, Yaping; Gupta, Pawan; Shi, Yingxi; Remer, Lorraine; Holz, Robert

2016-01-01

MODIS-DT Collection 6 - Aqua/Terra level 2, 3; entire record processed - "Trending" issues reduced - Still a 15% or 0.02 Terra vs Aqua offset. - Terra/Aqua convergence improved with C6+, but bias remains. - Other calibration efforts yield mixed results. VIIRS-­-DT in development - VIIRS is similar, yet different then MODIS - With 50% wider swath, VIIRS has daily coverage - Ensures algorithm consistency with MODIS. - Currently: 20% NPP vs Aqua offset over ocean. - Only small bias (%) over land (2012-­-2016) - Can VIIRS/MODIS create aerosol CDR? Calibration for MODIS - VIIRS continues to fundamentally important. It's not just Terra, or just Aqua, or just NPP-­-VIIRS, I really want to push synergistic calibration.

Remote Sensing of Aerosol using MODIS, MODIS+CALIPSO and with the AEROSAT Concept

NASA Technical Reports Server (NTRS)

Kaufman, Yoram J.

2002-01-01

In the talk I shall review the MODIS use of spectral information to derive aerosol size distribution, optical thickness and reflected spectral flux. The accuracy and validation of the MODIS products will be discussed. A few applications will be shown: inversion of combined MODIS+lidar data, aerosol Anthropogenic direct forcing, and dust deposition in the Atlantic Ocean. I shall also discuss the aerosol information that MODIS is measuring: real ref index, single scattering albedo, size of fine and coarse modes, and describe the AEROSAT concept that uses bright desert and glint to derive aerosol absorption.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Noble, Stephen R.; Hudson, James G.

Here, vertical sounding measurements within stratocumuli during two aircraft field campaigns, Marine Stratus/stratocumulus Experiment (MASE) and Physics of Stratocumulus Top (POST), are used to validate Moderate Resolution Imaging Spectroradiometer (MODIS) cloud optical thickness (COT), cloud liquid water path (LWP), and cloud effective radius (r e). In situ COT, LWP, and r e were calculated using 5 m vertically averaged droplet probe measurements of complete vertical cloud penetrations. MODIS COT, LWP, and r e 1 km pixels were averaged along these penetrations. COT comparisons in POST showed strong correlations and a near 1:1 relationship. In MASE, comparisons showed strong correlations; however,more » MODIS COT exceeded in situ COT, likely due to larger temporal differences between MODIS and in situ measurements. LWP comparisons between two cloud probes show good agreement for POST but not MASE, giving confidence to POST data. Both projects provided strong LWP correlations but MODIS exceeded in situ by 14–36%. MODIS in situ r e correlations were strong, but MODIS 2.1 µm r e exceeded in situ r e, which contributed to LWP bias; in POST, MODIS r e was 20–30% greater than in situ r e. Maximum in situ r e near cloud top showed comparisons nearer 1:1. Other MODIS r e bands (3.7 µm and 1.6 µm) showed similar comparisons. Temporal differences between MODIS and in situ measurements, airplane speed differences, and cloud probe artifacts were likely causes of weaker MASE correlations. POST COT comparison was best for temporal differences under 20 min. POST data validate MODIS COT but it also implies a positive MODIS r e bias that propagates to LWP while still capturing variability.« less

Validation of MODIS aerosol optical depth product over China using CARSNET measurements

NASA Astrophysics Data System (ADS)

Xie, Yong; Zhang, Yan; Xiong, Xiaoxiong; Qu, John J.; Che, Huizheng

2011-10-01

This study evaluates Moderate Resolution Imaging Spectroradiometer (MODIS) Aerosol Optical Depth (AOD) retrievals with ground measurements collected by the China Aerosol Remote Sensing NETwork (CARSNET). In current stage, the MODIS Collection 5 (C5) AODs are retrieved by two distinct algorithms: the Dark Target (DT) and the Deep Blue (DB). The CARSNET AODs are derived with measurements of Cimel Electronique CE-318, the same instrument deployed by the AEROsol Robotic Network (AEROENT). The collocation is performed by matching each MODIS AOD pixel (10 × 10 km 2) to CARSNET AOD mean within 7.5 min of satellite overpass. Four-year comparisons (2005-2008) of MODIS/CARSNET at ten sites show the performance of MODIS AOD retrieval is highly dependent on the underlying land surface. The MODIS DT AODs are on average lower than the CARSNET AODs by 6-30% over forest and grassland areas, but can be higher by up to 54% over urban area and 95% over desert-like area. More than 50% of the MODIS DT AODs fall within the expected error envelope over forest and grassland areas. The MODIS DT tends to overestimate for small AOD at urban area. At high vegetated area it underestimates for small AOD and overestimates for large AOD. Generally, its quality reduces with the decreasing AOD value. The MODIS DB is capable of retrieving AOD over desert but with a significant underestimation at CARSNET sites. The best retrieval of the MODIS DB is over grassland area with about 70% retrievals within the expected error. The uncertainties of MODIS AOD retrieval from spatial-temporal collocation and instrument calibration are discussed briefly.

A Model-based Approach to Scaling GPP and NPP in Support of MODIS Land Product Validation

NASA Astrophysics Data System (ADS)

Turner, D. P.; Cohen, W. B.; Gower, S. T.; Ritts, W. D.

2003-12-01

Global products from the Earth-orbiting MODIS sensor include land cover, leaf area index (LAI), FPAR, 8-day gross primary production (GPP), and annual net primary production (NPP) at the 1 km spatial resolution. The BigFoot Project was designed specifically to validate MODIS land products, and has initiated ground measurements at 9 sites representing a wide array of vegetation types. An ecosystem process model (Biome-BGC) is used to generate estimates of GPP and NPP for each 5 km x 5 km BigFoot site. Model inputs include land cover and LAI (from Landsat ETM+), daily meteorological data (from a centrally located eddy covariance flux tower), and soil characteristics. Model derived outputs are validated against field-measured NPP and flux tower-derived GPP. The resulting GPP and NPP estimates are then aggregated to the 1 km resolution for direct spatial comparison with corresponding MODIS products. At the high latitude sites (tundra and boreal forest), the MODIS GPP phenology closely tracks the BigFoot GPP, but there is a high bias in the MODIS GPP. In the temperate zone sites, problems with the timing and magnitude of the MODIS FPAR introduce differences in MODIS GPP compared to the validation data at some sites. However, the MODIS LAI/FPAR data are currently being reprocessed (=Collection 4) and new comparisons will be made for 2002. The BigFoot scaling approach permits precise overlap in spatial and temporal resolution between the MODIS products and BigFoot products, and thus permits the evaluation of specific components of the MODIS NPP algorithm. These components include meteorological inputs from the NASA Data Assimilation Office, LAI and FPAR from other MODIS algorithms, and biome-specific parameters for base respiration rate and light use efficiency.

Global Visualization (GloVis) Viewer

USGS Publications Warehouse

,

2005-01-01

GloVis (http://glovis.usgs.gov) is a browse image-based search and order tool that can be used to quickly review the land remote sensing data inventories held at the U.S. Geological Survey (USGS) Center for Earth Resources Observation and Science (EROS). GloVis was funded by the AmericaView project to reduce the difficulty of identifying and acquiring data for user-defined study areas. Updated daily with the most recent satellite acquisitions, GloVis displays data in a mosaic, allowing users to select any area of interest worldwide and immediately view all available browse images for the following Landsat data sets: Multispectral Scanner (MSS), Multi-Resolution Land Characteristics (MRLC), Orthorectified, Thematic Mapper (TM), Enhanced Thematic Mapper Plus (ETM+), and ETM+ Scan Line Corrector-off (SLC-off). Other data sets include Terra Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) and Moderate Resolution Imaging Spectroradiometer (MODIS), Aqua MODIS, and the Earth Observing-1 (EO-1) Advanced Land Imager (ALI) and Hyperion data.

Monitoring vegetation phenology using MODIS

USGS Publications Warehouse

Zhang, Xiayong; Friedl, Mark A.; Schaaf, Crystal B.; Strahler, Alan H.; Hodges, John C.F.; Gao, Feng; Reed, Bradley C.; Huete, Alfredo

2003-01-01

Accurate measurements of regional to global scale vegetation dynamics (phenology) are required to improve models and understanding of inter-annual variability in terrestrial ecosystem carbon exchange and climate–biosphere interactions. Since the mid-1980s, satellite data have been used to study these processes. In this paper, a new methodology to monitor global vegetation phenology from time series of satellite data is presented. The method uses series of piecewise logistic functions, which are fit to remotely sensed vegetation index (VI) data, to represent intra-annual vegetation dynamics. Using this approach, transition dates for vegetation activity within annual time series of VI data can be determined from satellite data. The method allows vegetation dynamics to be monitored at large scales in a fashion that it is ecologically meaningful and does not require pre-smoothing of data or the use of user-defined thresholds. Preliminary results based on an annual time series of Moderate Resolution Imaging Spectroradiometer (MODIS) data for the northeastern United States demonstrate that the method is able to monitor vegetation phenology with good success.

Analysis of Water Use Efficiency derived from MODIS satellite image in Northeast Asia

NASA Astrophysics Data System (ADS)

Park, J.; Jang, K.; Kang, S.

2014-12-01

Water Use Efficiency (WUE) is defined as ratio of evapotranspriation (ET) to gross primary productivity (GPP). It can detect the changes of ecosystem properties due to the variability of enviromental condition, and provide a chance to understand the linkage between carbon and water processes in terrestrial ecosystem. In a changing climate, the understanding of ecosystem functional responses to climate variability is crucial for evaluating effect. However, continental or sub-continental scale WUE analysis is were rare. In this study, WUE was estimated in the Northeast Asia using satellite data from 2003 to 2010. ET and GPP were estimated using various MODIS products. The estimated ET and GPP showed favorable agreements with flux tower observations. WUE in the study domain showed considerable variations according to the plant functional types and climatic and elevational gradients. The results produced in this study indicate that satellite remote sensing provides a useful tool for monitoring variability of terrestrial ecosystem functions.

Determining the Suitability of Different Digital Elevation Models and Satellite Images for Fancy Maps. An Example of Cyprus

NASA Astrophysics Data System (ADS)

Drachal, J.; Kawel, A. K.

2016-06-01

The article describes the possibility of developing an overall map of the selected area on the basis of publicly available data. Such a map would take the form designed by the author with the colors that meets his expectations and a content, which he considers to be appropriate. Among the data available it was considered the use of satellite images of the terrain in real colors and, in the form of shaded relief, digital terrain models with different resolutions of the terrain mesh. Specifically the considered data were: MODIS, Landsat 8, GTOPO-30, SRTM-30, SRTM-1, SRTM-3, ASTER. For the test area the island of Cyprus was chosen because of the importance in tourism, a relatively small area and a clearly defined boundary. In the paper there are shown and discussed various options of the Cyprus terrain image obtained synthetically from variants of Modis, Landsat and digital elevation models of different resolutions.

Calibration Uncertainty in Ocean Color Satellite Sensors and Trends in Long-term Environmental Records

NASA Technical Reports Server (NTRS)

Turpie, Kevin R.; Eplee, Robert E., Jr.; Franz, Bryan A.; Del Castillo, Carlos

2014-01-01

Launched in late 2011, the Visible Infrared Imaging Radiometer Suite (VIIRS) aboard the Suomi National Polar-orbiting Partnership (NPP) spacecraft is being evaluated by NASA to determine whether this sensor can continue the ocean color data record established through the Sea-Viewing Wide Field-of-view Sensor (SeaWiFS) and the MODerate resolution Imaging Spectroradiometer (MODIS). To this end, Goddard Space Flight Center generated evaluation ocean color data products using calibration techniques and algorithms established by NASA during the SeaWiFS and MODIS missions. The calibration trending was subjected to some initial sensitivity and uncertainty analyses. Here we present an introductory assessment of how the NASA-produced time series of ocean color is influenced by uncertainty in trending instrument response over time. The results help quantify the uncertainty in measuring regional and global biospheric trends in the ocean using satellite remote sensing, which better define the roles of such records in climate research.

Linking disease-associated genes to regulatory networks via promoter organization

PubMed Central

Döhr, S.; Klingenhoff, A.; Maier, H.; de Angelis, M. Hrabé; Werner, T.; Schneider, R.

2005-01-01

Pathway- or disease-associated genes may participate in more than one transcriptional co-regulation network. Such gene groups can be readily obtained by literature analysis or by high-throughput techniques such as microarrays or protein-interaction mapping. We developed a strategy that defines regulatory networks by in silico promoter analysis, finding potentially co-regulated subgroups without a priori knowledge. Pairs of transcription factor binding sites conserved in orthologous genes (vertically) as well as in promoter sequences of co-regulated genes (horizontally) were used as seeds for the development of promoter models representing potential co-regulation. This approach was applied to a Maturity Onset Diabetes of the Young (MODY)-associated gene list, which yielded two models connecting functionally interacting genes within MODY-related insulin/glucose signaling pathways. Additional genes functionally connected to our initial gene list were identified by database searches with these promoter models. Thus, data-driven in silico promoter analysis allowed integrating molecular mechanisms with biological functions of the cell. PMID:15701758

Relating a Spectral Index from MODIS and Tower-based Measurements to Ecosystem Light Use Efficiency for a Fluxnet-Canada Coniferous Forest

NASA Technical Reports Server (NTRS)

Middleton, Elizabeth M.; Cheng, Yen-Ben; Hilker, Thomas; Huemmrich, Karl F.; Black, T. Andrew; Krishnan, Praveena; Coops, Nicholas C.

2008-01-01

As part of the North American Carbon Program effort to quantify the terrestrial carbon budget of North America, we have been examining the possibility of retrieving ecosystem light use efficiency (LUE, the carbon sequestered per unit photosynthetically active radiation) directly from satellite observations. Our novel approach has been to compare LUE derived from tower fluxes with LUE estimated using spectral indices computed from MODIS satellite observations over forests in the Fluxnet-Canada Research Network, using the MODIS narrow ocean bands acquired over land. We matched carbon flux data collected around the time of the MODIS mid-day overpass for over one hundred relatively clear days in five years (2001-2006) from a mature Douglas fir forest in British Columbia. We also examined hyperspectral reflectance data collected diurnally from the tower in conjunction with the eddy correlation fluxes and meteorological measurements made throughout the 2006 growing season at this site. The tower-based flux data provided an opportunity to examine diurnal and seasonal LUE processes and their relationship to spectral indices at the scale of the forest stand. We evaluated LUE in conjunction with the Photochemical Reflectance Index (PRI), a normalized difference spectral index that uses 531 nm and a reference band to capture responses to high light induced stress afforded by the xanthophyll cycle. Canopy structure information, retrieved from airborne laser scanning radar (LiDAR) observations, was used to partition the forest canopy into sunlit and shaded fractions throughout the day, on numerous days during 2006. At each observation period throughout a day, the PRI was examined for the sunlit, shaded, and intermediate canopy segments defined by their instantaneous position relative to the solar principal plane (SPP). The sunlit sector was associated with the illumination "hotspot" (the reflectance backscatter maximum), the shaded sector with the "cold or dark spot" (the reflectance forward scatter minimum), while the intermediate, mixed sunlit/shade sector was located in the cross-plane to the SPP. The PRI indices clearly captured the differences in leaf groups, with sunlit foliage exhibiting the lowest values on sunny days throughout the 2006 season. When tower-based canopy-level LUE was recalculated to estimate foliage-based values (LUE(sub foilage) for the three foliage groups under their incident light environments, a strong linear relationship for PRI:LUE(sub foilage) was demonstrated (0.6 less than or equal to r(sup 2) less than or equal to 0.8, n=822, P<0.0001). The MODIS data represent relatively large areas when acquired at nadir (approx.1 sq km) or at variable off-nadir view angles (greater than or equal to 1 sq km) looking forward or aft. Nevertheless, a similar relationship between MODIS PRI and tower-based LUE was obtained from satellite observations (r(sup 2) = 0.76, n=105, P= 0.026) when the azimuth offsets from the SPP for off-nadir observations were considered. At this relatively high latitude of 50 degrees, the MODIS directional observations were offset from the SPP by approximately 50 degrees, but still represented backscatter or forward scatter sectors of the bidirectional reflectance distribution function (BRDF). The backscatter observations sampled the sunlit forest and provided lower PRI values, in general, than the forward scatter observations from the shaded forest. Since the hotspot and darkspot were not typically directly observed, the dynamic range for MODIS PRI was less than that observed in the SPP at the canopy level; therefore, MODIS PRI values were more similar to those observed in sifu in the BRDF cross-plane. While not ideal in terms of spatial resolution or optimal viewing configuration, the MODIS observations nevertheless provide a means to monitor forest under stress using narrow spectral band indices and off-nadir observations. This research has stimulated several spin-off studies for remote sensinf LUE, and demonstrates the importance of the connection between ecosystem structure and physiological function.

An Evaluation of MODIS-Retrieved Aerosol Optical Depth over a Mountainous AERONET Site in the Southeastern US

NASA Technical Reports Server (NTRS)

Sherman, James P.; Gupta, Pawan; Levy, Robert C.; Sherman, Peter J.

2016-01-01

The literature shows that aerosol optical depth (AOD) derived from the MODIS Collection 5 (C5) dark target algorithm has been extensively validated by spatiotemporal collocation with AERONET sites on both global and regional scales.Although generally comparing well over the eastern US region, poor performance over mountains in other regions indicate the need to evaluate the MODIS product over a mountain site. This study compares MODIS C5 AOD at 550nm to AOD measured at the Appalachian State University AERONET site in Boone, NC over 30 months between August 2010 and September 2013. For the combined Aqua and Terra datasets, although more than 70% of the 500 MODIS AOD measurements agree with collocated AERONET AOD to within error envelope of +/- (0.05 + 15%), MODIS tends to have a low bias (0.02-0.03). The agreement between MODIS and AERONET AOD does not depend on MODIS quality assurance confidence (QAC) value. However, when stratified by satellite, MODIS-Terra data does not perform as well as Aqua, with especially poor correlation (r = 0.39) for low aerosol loading conditions (AERONET AOD less than 0.15).Linear regressions between Terra and AERONET possess statistically-different slopes for AOD < 0.15 and AOD > or = 0.15. AERONET AOD measured only during MODIS overpass hours is highly correlated with daily-averaged AERONET AOD. MODIS monthly-averaged AOD also tracks that of AERONET over the study period. These results indicate that MODIS is sensitive to the day-to-day variability, as well as the annual cycle of AOD over the Appalachian State AERONET site. The complex topography and high seasonality in AOD and vegetation indices allow us to specifically evaluate MODIS dark target algorithm surface albedo and aerosol model assumptions at a regionally-representative SE US mountain site.

Synergistic Use of MODIS and AIRS in a Variational Retrieval of Cloud Parameters.

NASA Astrophysics Data System (ADS)

Li, Jun; Menzel, W. Paul; Zhang, Wenjian; Sun, Fengying; Schmit, Timothy J.; Gurka, James J.; Weisz, Elisabeth

2004-11-01

The Moderate Resolution Imaging Spectroradiometer (MODIS) and the Atmospheric Infrared Sounder (AIRS) measurements from the Earth Observing System's (EOS's) Aqua satellite enable global monitoring of the distribution of clouds. MODIS is able to provide a cloud mask, surface and cloud types, cloud phase, cloud-top pressure (CTP), effective cloud amount (ECA), cloud particle size, and cloud optical thickness at high spatial resolution (1 5 km). The combined MODIS AIRS system offers the opportunity for improved cloud products, better than from either system alone; this improvement is demonstrated in this paper with both simulated and real radiances. A one-dimensional variational (1DVAR) methodology is used to retrieve the CTP and ECA from AIRS longwave (650 790 cm-1 or 15.38 12.65 μm) cloudy radiance measurements (hereinafter referred to as MODIS AIRS 1DVAR). The MODIS AIRS 1DVAR cloud properties show significant improvement over the MODIS-alone cloud properties and slight improvement over AIRS-alone cloud properties in a simulation study, while MODIS AIRS 1DVAR is much more computationally efficient than the AIRS-alone 1DVAR; comparisons with radiosonde observations show that CTPs improve by 10 40 hPa for MODIS AIRS CTPs over those from MODIS alone. The 1DVAR approach is applied to process the AIRS longwave cloudy radiance measurements; results are compared with MODIS and Geostationary Operational Environmental Satellite sounder cloud products. Data from ground-based instrumentation at the Atmospheric Radiation Measurement Program Cloud and Radiation Test Bed in Oklahoma are used for validation; results show that MODIS AIRS improves the MODIS CTP, especially in low-level clouds. The operational use of a high-spatial-resolution imager, along with information from a high-spectral-resolution sounder will be possible with instruments planned for the next-generation geostationary operational instruments.

MODIS GPP/NPP for complex land use area: a case study of comparison between MODIS GPP/NPP and ground-based measurements over Korea

NASA Astrophysics Data System (ADS)

Shim, C.

2013-12-01

The Moderate Resolution Imaging Radiometer (MODIS) Gross Primary Productivity (GPP)/Net Primary Productivity (NPP) has been widely used for the study on global terrestrial ecosystem and carbon cycle. The current MODIS product with ~ 1 km spatial resolution, however, has limitation on the information on local scale environment (< 1km), particularly on the regions with complex land-use types. Here we try to test the performance of MODIS annual GPP/NPP for a case of Korea, where the vegetation types are mostly heterogeneous within a size of MODIS products (~1km). We selected the sites where the ground/tower flux measurements and MODIS retrievals were simultaneously available and the land classification of sites agreed the forest type map (~71m) (1 site over Gwangneung flux tower (GDK) for 2006-2008 and 2 sites of ground measurements over Cheongju (CJ1 and CJ2) for 2011). The MODIS GPP are comparable to that of GDK (largely deciduous forest) within -6.3 ~ +2.3% of bias (-104.5 - 37.9 gCm-2yr-1). While the MODIS NPP of CJ1 at Cheongju (largely Larix leptolepis) underestimated NPP by 34% (-224.5 gCm-2yr-1), the MODIS NPP of CJ2 (largely Pinus densiflora) agreed well with -0.2% of bias (1.6 gCm-2yr-1). The fairly comparable values of the MODIS here however, cannot assure the quality of the MOD17 over the complex vegetation area of Korea since the ground measurements except the eddy covariance tower flux measurements are highly inconsistent. Therefore, the comprehensive experiments to represents GPP/NPP over diverse vegetation types for a comparable scale of MODIS with a consistent measurement technique are necessary in order to evaluate the MODIS vegetation productivity data over Korea, which contains a large portion of highly heterogeneous vegetation area.

Results and lessons learned from MODIS polarization sensitivity characterization

NASA Astrophysics Data System (ADS)

Sun, J.; Xiong, X.; Wang, X.; Qiu, S.; Xiong, S.; Waluschka, E.

2006-08-01

In addition to radiometric, spatial, and spectral calibration requirements, MODIS design specifications include polarization sensitivity requirements of less than 2% for all Reflective Solar Bands (RSB) except for the band centered at 412nm. To the best of our knowledge, MODIS was the first imaging radiometer that went through comprehensive system level (end-to-end) polarization characterization. MODIS polarization sensitivity was measured pre-launch at a number of sensor view angles using a laboratory Polarization Source Assembly (PSA) that consists of a rotatable source, a polarizer (Ahrens prism design), and a collimator. This paper describes MODIS polarization characterization approaches used by MODIS Characterization Support Team (MCST) at NASA/GSFC and addresses issues and concerns in the measurements. Results (polarization factor and phase angle) using different analyzing methods are discussed. Also included in this paper is a polarization characterization comparison between Terra and Aqua MODIS. Our previous and recent analysis of MODIS RSB polarization sensitivity could provide useful information for future Earth-observing sensor design, development, and characterization.

Cloud Retrieval Intercomparisons Between SEVIRI, MODIS and VIIRS with CHIMAERA PGE06 Data Collection 6 Products

NASA Technical Reports Server (NTRS)

Wind, Galina; Riedi, Jerome; Platnick, Steven; Heidinger, Andrew

2014-01-01

The Cross-platform HIgh resolution Multi-instrument AtmosphEric Retrieval Algorithms (CHIMAERA) system allows us to perform MODIS-like cloud top, optical and microphysical properties retrievals on any sensor that possesses a minimum set of common spectral channels. The CHIMAERA system uses a shared-core architecture that takes retrieval method out of the equation when intercomparisons are made. Here we show an example of such retrieval and a comparison of simultaneous retrievals done using SEVIRI, MODIS and VIIRS sensors. All sensor retrievals are performed using CLAVR-x (or CLAVR-x based) cloud top properties algorithm. SEVIRI uses the SAF_NWC cloud mask. MODIS and VIIRS use the IFF-based cloud mask that is a shared algorithm between MODIS and VIIRS. The MODIS and VIIRS retrievals are performed using a VIIRS branch of CHIMAERA that limits available MODIS channel set. Even though in that mode certain MODIS products such as multilayer cloud map are not available, the cloud retrieval remains fully equivalent to operational Data Collection 6.

Spatially Varying Spectrally Thresholds for MODIS Cloud Detection

NASA Technical Reports Server (NTRS)

Haines, S. L.; Jedlovec, G. J.; Lafontaine, F.

2004-01-01

The EOS science team has developed an elaborate global MODIS cloud detection procedure, and the resulting MODIS product (MOD35) is used in the retrieval process of several geophysical parameters to mask out clouds. While the global application of the cloud detection approach appears quite robust, the product has some shortcomings on the regional scale, often over determining clouds in a variety of settings, particularly at night. This over-determination of clouds can cause a reduction in the spatial coverage of MODIS derived clear-sky products. To minimize this problem, a new regional cloud detection method for use with MODIS data has been developed at NASA's Global Hydrology and Climate Center (GHCC). The approach is similar to that used by the GHCC for GOES data over the continental United States. Several spatially varying thresholds are applied to MODIS spectral data to produce a set of tests for detecting clouds. The thresholds are valid for each MODIS orbital pass, and are derived from 20-day composites of GOES channels with similar wavelengths to MODIS. This paper and accompanying poster will introduce the GHCC MODIS cloud mask, provide some examples, and present some preliminary validation.

Optical and Ancillary Measurements at High Latitudes in Support of the MODIS Ocean Validation Program

NASA Technical Reports Server (NTRS)

Stramski, Dariusz; Stramska, Malgorzata; Starr, David OC. (Technical Monitor)

2002-01-01

The overall goal of this project was to validate and refine ocean color algorithms at high latitudes in the north polar region of the Atlantic. The specific objectives were defined as follows: (1) to identify and quantify errors in the satellite-derived water-leaving radiances and chlorophyll concentration; (2) to develop understanding of these errors; and (3) to improve in-water ocean color algorithms for retrieving chlorophyll concentration in the investigated region.

CHIMAERA System for Cloud Retrievals v 6.0.85

NASA Technical Reports Server (NTRS)

Wind, Galina; Platnick, Steven; Meyer, Kerry; Amarasinghe, Nandana; Marchant, Benjamin; Arnold, Tom; King, Michael D.

2015-01-01

Organizers of the MODIS-VIIRS Science Team Meeting, held May 18-22, 2015 in Silver Spring, MD plan to post the presentations and posters to the NASA MODIS website: http:modis.gsfc.nasa.govsci_teammeetings201505index.php. The MODIS Science Team Meeting is held twice a year, so that the members of the science team may assemble and discuss data they have collected, ideas they have formed, and future issues that apply to the MODIS Mission.

Maturity-onset diabetes of the young (MODY): how many cases are we missing?

PubMed

Shields, B M; Hicks, S; Shepherd, M H; Colclough, K; Hattersley, A T; Ellard, S

2010-12-01

Maturity-onset diabetes of the young is frequently misdiagnosed as type 1 or type 2 diabetes. A correct diagnosis of MODY is important for determining treatment, but can only be confirmed by molecular genetic testing. We aimed to compare the regional distribution of confirmed MODY cases in the UK and to estimate the minimum prevalence. UK referrals for genetic testing in 2,072 probands and 1,280 relatives between 1996 and 2009 were examined by region, country and test result. Referral rate and prevalence were calculated using UK Census 2001 figures. MODY was confirmed in 1,177 (35%) patients, with HNF1A (52%) and GCK mutations (32%) being most frequent in probands confirmed with MODY. There was considerable regional variation in proband referral rates (from <20 per million in Wales and Northern Ireland to >50 per million for South West England and Scotland) and patients diagnosed with MODY (5.3 per million in Northern Ireland, 48.9 per million in South West England). Referral rates and confirmed cases were highly correlated (r = 0.96, p < 0.0001). The minimum prevalence of MODY was estimated to be 108 cases per million. Assuming this minimal prevalence throughout the UK then >80% of MODY is not diagnosed by molecular testing. The marked regional variation in the prevalence of confirmed MODY directly results from differences in referral rates. This could reflect variation in awareness of MODY or unequal access to genetic testing. Increased referral for diagnostic testing is required if the majority of MODY patients are to have the genetic diagnosis necessary for optimal treatment.

MODIS technical report series. Volume 3: MODIS airborne simulator level 1B data user's guide

NASA Technical Reports Server (NTRS)

Gumley, Liam E.; Hubanks, Paul A.; Masuoka, Edward J.

1994-01-01

The purpose of this document is to describe the characteristics of moderate resolution imaging spectroradiometer (MODIS) airborne simulator level 1B data, the calibration and geolocation methods used in processing, the structure and format of the level 1B data files, and methods for accessing the data. The MODIS airborne simulator is a scanning spectrometer which flies on a NASA ER-2 and provides spectral information similar to that which will be provided by the MODIS.

Validation of MODIS Aerosol Retrieval Over Ocean

NASA Technical Reports Server (NTRS)

Remer, Lorraine A.; Tanre, Didier; Kaufman, Yoram J.; Ichoku, Charles; Mattoo, Shana; Levy, Robert; Chu, D. Allen; Holben, Brent N.; Dubovik, Oleg; Ahmad, Ziauddin;

Summary of Terra and Aqua MODIS Long-Term Performance

NASA Technical Reports Server (NTRS)

Xiong, Xiaoxiong (Jack); Wenny, Brian N.; Angal, Amit; Barnes, William; Salomonson, Vincent

2011-01-01

Since launch in December 1999, the MODIS ProtoFlight Model (PFM) onboard the Terra spacecraft has successfully operated for more than 11 years. Its Flight Model (FM) onboard the Aqua spacecraft, launched in May 2002, has also successfully operated for over 9 years. MODIS observations are made in 36 spectral bands at three nadir spatial resolutions and are calibrated and characterized regularly by a set of on-board calibrators (OBC). Nearly 40 science products, supporting a variety of land, ocean, and atmospheric applications, are continuously derived from the calibrated reflectances and radiances of each MODIS instrument and widely distributed to the world-wide user community. Following an overview of MODIS instrument operation and calibration activities, this paper provides a summary of both Terra and Aqua MODIS long-term performance. Special considerations that are critical to maintaining MODIS data quality and beneficial for future missions are also discussed.

Snow and Ice Mask for the MODIS Aerosol Products

NASA Technical Reports Server (NTRS)

Li, Rong-Rong; Remer, Lorraine; Kaufman, Yoram J.; Mattoo, Shana; Gao, Bo-Cai; Vermote, Eric

2005-01-01

The atmospheric products have been derived operationally from multichannel imaging data collected with the Moderate Resolution Imaging SpectroRadiometers (MODIS) on board the NASA Terra and Aqua spacecrafts. Preliminary validations of the products were previously reported. Through analysis of more extensive time-series of MODIS aerosol products (Collection 4), we have found that the aerosol products over land areas are slightly contaminated by snow and ice during the springtime snow-melting season. We have developed an empirical technique using MODIS near-IR channels centered near 0.86 and 1.24 pm and a thermal emission channel near 11 pm to mask out these snow-contaminated pixels over land. Improved aerosol retrievals over land have been obtained. Sample results from application of the technique to MODIS data acquired over North America, northern Europe, and northeastern Asia are presented. The technique has been implemented into the MODIS Collection 5 operational algorithm for retrieving aerosols over land from MODIS data.

Synergetic use of Aerosol Robotic Network (AERONET) and Moderate Image Spectrometer (MODIS)

NASA Technical Reports Server (NTRS)

Kaufman, Y.

2004-01-01

I shall describe several distinct modes in which AERONET data are used in conjunction with MODIS data to evaluate the global aerosol system and its impact on climate. These includes: 1) Evaluation of the aerosol diurnal cycle not available from MODIS, and the relationship between the aerosol properties derived from MODIS and the daily average of these properties; 2) Climatology of the aerosol size distribution and single scattering albedo. The climatology is used to formulate the assumptions used in the MODIS look up tables used in the inversion of MODIS data; 3) Measurement of the aerosol effect on irradiation of the surface, this is used in conjunction with the MODIS evaluation of the aerosol effect at the TOA; and 4) Assessment of the aerosol baseline on top off which the satellite data are used to find the amount of dust or anthropogenic aerosol.

Progress towards MODIS and VIIRS Cloud Optical Property Data Record Continuity

NASA Astrophysics Data System (ADS)

Meyer, K.; Platnick, S. E.; Wind, G.; Amarasinghe, N.; Holz, R.; Ackerman, S. A.; Heidinger, A. K.

2016-12-01

The launch of Suomi NPP in the fall of 2011 began the next generation of U.S. operational polar orbiting Earth observations, and its VIIRS imager provides an opportunity to extend the 15+ year climate data record of MODIS EOS. Similar to MODIS, VIIRS provides visible through IR observations at moderate spatial resolution with a 1330 LT equatorial crossing consistent with the MODIS on the Aqua platform. However, unlike MODIS, VIIRS lacks key water vapor and CO2 absorbing channels used for high cloud detection and cloud-top property retrievals, and there is a significant change in the spectral location of the 2.1μm shortwave-infrared channel used for cloud optical/microphysical retrievals and cloud thermodynamic phase. Given these instrument differences between MODIS EOS and VIIRS S-NPP/JPSS, we discuss our progress towards merging the MODIS observational record with VIIRS in order to generate cloud optical property climate data record continuity across the observing systems. The MODIS-VIIRS continuity algorithm for cloud optical property retrievals leverages heritage algorithms that produce the existing MODIS cloud optical and microphysical properties product (MOD06); the NOAA AWG/CLAVR-x cloud-top property algorithm and a common MODIS-VIIRS cloud mask feed into the optical property algorithm. To account for the different channel sets of MODIS and VIIRS, each algorithm nominally uses a subset of channels common to both imagers. Data granule and aggregated examples for the current version of the continuity algorithm (MODAWG) will be shown. In addition, efforts to reconcile apparent radiometric biases between analogous channels of the two imagers, a critical consideration for obtaining inter-sensor climate data record continuity, will be discussed.

High-sensitivity CRP discriminates HNF1A-MODY from other subtypes of diabetes.

PubMed

McDonald, Tim J; Shields, Beverley M; Lawry, Jane; Owen, Katharine R; Gloyn, Anna L; Ellard, Sian; Hattersley, Andrew T

2011-08-01

Maturity-onset diabetes of the young (MODY) as a result of mutations in hepatocyte nuclear factor 1-α (HNF1A) is often misdiagnosed as type 1 diabetes or type 2 diabetes. Recent work has shown that high-sensitivity C-reactive protein (hs-CRP) levels are lower in HNF1A-MODY than type 1 diabetes, type 2 diabetes, or glucokinase (GCK)-MODY. We aim to replicate these findings in larger numbers and other MODY subtypes. hs-CRP levels were assessed in 750 patients (220 HNF1A, 245 GCK, 54 HNF4-α [HNF4A], 21 HNF1-β (HNF1B), 53 type 1 diabetes, and 157 type 2 diabetes). hs-CRP was lower in HNF1A-MODY (median [IQR] 0.3 [0.1-0.6] mg/L) than type 2 diabetes (1.40 [0.60-3.45] mg/L; P < 0.001) and type 1 diabetes (1.10 [0.50-1.85] mg/L; P < 0.001), HNF4A-MODY (1.45 [0.46-2.88] mg/L; P < 0.001), GCK-MODY (0.60 [0.30-1.80] mg/L; P < 0.001), and HNF1B-MODY (0.60 [0.10-2.8] mg/L; P = 0.07). hs-CRP discriminated HNF1A-MODY from type 2 diabetes with hs-CRP <0.75 mg/L showing 79% sensitivity and 70% specificity (receiver operating characteristic area under the curve = 0.84). hs-CRP levels are lower in HNF1A-MODY than other forms of diabetes and may be used as a biomarker to select patients for diagnostic HNF1A genetic testing.

Identification of circulating microRNAs in HNF1A-MODY carriers.

PubMed

Bonner, C; Nyhan, K C; Bacon, S; Kyithar, M P; Schmid, J; Concannon, C G; Bray, I M; Stallings, R L; Prehn, J H M; Byrne, M M

2013-08-01

HNF1A-MODY is a monogenic form of diabetes caused by mutations in the HNF1A gene. Here we identify, for the first time, HNF1A-MODY-associated microRNAs (miRNAs) that can be detected in the serum of HNF1A-MODY carriers. An miRNA array was carried out in rat INS-1 insulinoma cells inducibly expressing the common human Pro291fsinsC-HNF1A frame shift mutation. Differentially expressed miRNAs were validated by quantitative real-time PCR. Expression of miRNAs in the serum of HNF1A-MODY carriers (n = 31), MODY-negative family members (n = 10) and individuals with type 2 diabetes mellitus (n = 17) was quantified by absolute real-time PCR analysis. Inducible expression of Pro291fsinsC-HNF1A in INS-1 cells caused a significant upregulation of three miRNAs (miR-103, miR-224, miR-292-3p). The differential expression of two miRNAs (miR-103 and miR-224) was validated in vitro. Strongly elevated levels of miR-103 and miR-224 could be detected in the serum of HNF1A-MODY carriers compared with MODY-negative family controls. Serum levels of miR-103 distinguished HNF1A-MODY carriers from HbA1c-matched individuals with type 2 diabetes mellitus. Our study demonstrates that the pathophysiology of HNF1A-MODY is associated with the overexpression of miR-103 and miR-224. Furthermore, our study demonstrates that these miRNAs can be readily detected in the serum of HNF1A-MODY carriers.

MODIS Data from the GES DISC DAAC: Moderate-Resolution Imaging Spectroradiometer (MODIS)

NASA Technical Reports Server (NTRS)

2002-01-01

The Goddard Earth Sciences (GES) Distributed Active Archive Center (DAAC) is responsible for the distribution of the Level 1 data, and the higher levels of all Ocean and Atmosphere products (Land products are distributed through the Land Processes (LP) DAAC DAAC, and the Snow and Ice products are distributed though the National Snow and Ice Data Center (NSIDC) DAAC). Ocean products include sea surface temperature (SST), concentrations of chlorophyll, pigment and coccolithophores, fluorescence, absorptions, and primary productivity. Atmosphere products include aerosols, atmospheric water vapor, clouds and cloud masks, and atmospheric profiles from 20 layers. While most MODIS data products are archived in the Hierarchical Data Format-Earth Observing System (HDF-EOS 2.7) format, the ocean binned products and primary productivity products (Level 4) are in the native HDF4 format. MODIS Level 1 and 2 data are of the Swath type and are packaged in files representing five minutes of Files for Level 3 and 4 are global products at daily, weekly, monthly or yearly resolutions. Apart from the ocean binned and Level 4 products, these are in Grid type, and the maps are in the Cylindrical Equidistant projection with rectangular grid. Terra viewing (scenes of approximately 2000 by 2330 km). MODIS data have several levels of maturity. Most products are released with a provisional level of maturity and only announced as validated after rigorous testing by the MODIS Science Teams. MODIS/Terra Level 1, and all MODIS/Terra 11 micron SST products are announced as validated. At the time of this publication, the MODIS Data Support Team (MDST) is working with the Ocean Science Team toward announcing the validated status of the remainder of MODIS/Terra Ocean products. MODIS/Aqua Level 1 and cloud mask products are released with provisional maturity.

Differential Effects of HNF-1α Mutations Associated with Familial Young-Onset Diabetes on Target Gene Regulation

PubMed Central

Galán, Maria; García-Herrero, Carmen-Maria; Azriel, Sharona; Gargallo, Manuel; Durán, Maria; Gorgojo, Juan-Jose; Andía, Victor-Manuel; Navas, Maria-Angeles

2011-01-01

Hepatocyte nuclear factor 1-α (HNF-1α) is a homeodomain transcription factor expressed in a variety of tissues (including liver and pancreas) that regulates a wide range of genes. Heterozygous mutations in the gene encoding HNF-1α (HNF1A) cause familial young-onset diabetes, also known as maturity-onset diabetes of the young, type 3 (MODY3). The variability of the MODY3 clinical phenotype can be due to environmental and genetic factors as well as to the type and position of mutations. Thus, functional characterization of HNF1A mutations might provide insight into the molecular defects explaining the variability of the MODY3 phenotype. We have functionally characterized six HNF1A mutations identified in diabetic patients: two novel ones, p.Glu235Gly and c-57-64delCACGCGGT;c-55G>C; and four previously described, p.Val133Met, p.Thr196Ala, p.Arg271Trp and p.Pro379Arg. The effects of mutations on transcriptional activity have been measured by reporter assays on a subset of HNF-1α target promoters in Cos7 and Min6 cells. Target DNA binding affinities have been quantified by electrophoretic mobility shift assay using bacterially expressed glutathione-S-transferase (GST)-HNF-1α fusion proteins and nuclear extracts of transfected Cos7 cells. Our functional studies revealed that mutation c-57-64delCACGCGGT;c-55G>C reduces HNF1A promoter activity in Min6 cells and that missense mutations have variable effects. Mutation p.Arg271Trp impairs HNF-1α activity in all conditions tested, whereas mutations p.Val133Met, p.Glu235Gly and p.Pro379Arg exert differential effects depending on the target promoter. In contrast, substitution p.Thr196Ala does not appear to alter HNF-1α function. Our results suggest that HNF1A mutations may have differential effects on the regulation of specific target genes, which could contribute to the variability of the MODY3 clinical phenotype. PMID:21170474

Comparison of MODIS and VIIRS Snow Cover Products for the 2016 Hydrological Year

NASA Astrophysics Data System (ADS)

Klein, A. G.; Thapa, S.

2017-12-01

The VIIRS (Visible Infrared Imaging Radiometer Suite) instrument on board the Suomi-NPP satellite aims to provide long-term continuity of several environmental data series including snow cover initiated with MODIS. While it is speculated that MODIS and VIIRS snow cover products may differ because of their differing spatial resolutions and spectral coverage quantitative comparisons between their snow products are currently limited. Therefore this study intercompares MODIS and VIIRS snow products for the 2016 Hydrological Year over the Midwestern United States and southern Canada. Two hundred and forty-four swath snow products from MODIS/Aqua (MYD10L2) and the VIIRS EDR (VSCMO/binary) were intercompared using confusion matrices, comparison maps and false color imagery. Thresholding the MODIS NDSI Snow Cover product at a snow cover fraction of 30% generated binary snow maps most comparable to the NOAA VIIRS binary snow product. Overall agreement between MODIS and VIIRS was found to be approximately 98%. This exceeds the VIIRS accuracy requirements of 90% probability of correct typing. Agreement was highest during the winter but lower during late fall and spring. Comparability was lowest over forest. MODIS and VIIRS often mapped snow/no-snow transition zones as cloud. The assessment of total snow and cloud pixels and comparison snow maps of MODIS and VIIRS indicates that VIIRS is mapping more snow cover and less cloud cover compared to MODIS. This is evidenced by the average area of snow in MYD10L2 and VSCMO being 5.72% and 11.43%, no-snow 26.65% and 28.67%, and cloud 65.02% and 59.91%, respectively. Visual comparisons depict good qualitative agreement between snow cover area visible in MODIS and VIIRS false color imagery and mapped in their respective snow cover products. While VIIRS and MODIS have similar capacity to map snow cover, VIIRS has the potential to more accurately map snow cover area for the successive development of climate data records.

Synergism of MODIS Aerosol Remote Sensing from Terra and Aqua

NASA Technical Reports Server (NTRS)

Ichoku, Charles; Kaufman, Yoram J.; Remer, Lorraine A.

2003-01-01

The MODerate-resolution Imaging Spectro-radiometer (MODIS) sensors, aboard the Earth Observing System (EOS) Terra and Aqua satellites, are showing excellent competence at measuring the global distribution and properties of aerosols. Terra and Aqua were launched on December 18, 1999 and May 4, 2002 respectively, with daytime equator crossing times of approximately 10:30 am and 1:30 pm respectively. Several aerosol parameters are retrieved at 10-km spatial resolution from MODIS daytime data over land and ocean surfaces. The parameters retrieved include: aerosol optical thickness (AOT) at 0.47, 0.55 and 0.66 micron wavelengths over land, and at 0.47, 0.55, 0.66, 0.87, 1.2, 1.6, and 2.1 microns over ocean; Angstrom exponent over land and ocean; and effective radii, and the proportion of AOT contributed by the small mode aerosols over ocean. Since the beginning of its operation, the quality of Terra-MODIS aerosol products (especially AOT) have been evaluated periodically by cross-correlation with equivalent data sets acquired by ground-based (and occasionally also airborne) sunphotometers, particularly those coordinated within the framework of the AErosol Robotic NETwork (AERONET). Terra-MODIS AOT data have been found to meet or exceed pre-launch accuracy expectations, and have been applied to various studies dealing with local, regional, and global aerosol monitoring. The results of these Terra-MODIS aerosol data validation efforts and studies have been reported in several scientific papers and conferences. Although Aqua-MODIS is still young, it is already yielding formidable aerosol data products, which are also subjected to careful periodic evaluation similar to that implemented for the Terra-MODIS products. This paper presents results of validation of Aqua-MODIS aerosol products with AERONET, as well as comparative evaluation against corresponding Terra-MODIS data. In addition, we show interesting independent and synergistic applications of MODIS aerosol data from both Terra and Aqua. In certain situations, this combined analysis of Terra- and Aqua-MODIS data offers an insight into the diurnal cycle of aerosol loading.

Validation of ET maps derived from MODIS imagery

NASA Astrophysics Data System (ADS)

Hong, S.; Hendrickx, J. M.; Borchers, B.

2005-12-01

In previous work we have used the New Mexico Tech implementation of the Surface Energy Balance Algorithm for Land (SEBAL-NMT) for the generation of ET maps from LandSat imagery. Comparison of these SEBAL ET estimates versus ET ground measurements using eddy covariance showed satisfactory agreement between the two methods in the heterogeneous arid landscape of the Middle Rio Grande Basin. The objective of this study is to validate SEBAL ET estimates obtained from MODIS imagery. The use of MODIS imagery is attractive since MODIS images are available at a much higher frequency than LandSat images at no cost to the user. MODIS images have a pixel size in the thermal band of 1000x1000 m which is much coarser than the 60x60 m pixel size of LandSat 7. This large pixel size precludes the use of eddy covariance measurements for validation of ET maps derived from MODIS imagery since the eddy covariance measurement is not representative of a 1000x1000 m MODIS pixel. In our experience, a typical foot print of an ET rate measured by eddy covariance on a clear day in New Mexico around 11 am is less than then thousand square meters or two orders of magnitude smaller than a MODIS thermal pixel. Therefore, we have validated ET maps derived from MODIS imagery by comparison with up-scaled ET maps derived from LandSat imagery. The results of our study demonstrate: (1) There is good agreement between ET maps derived from LandSat and MODIS images; (2) Up-scaling of LandSat ET maps over the Middle Rio Grande Basin produces ET maps that are very similar to ET maps directly derived from MODIS images; (3) ET maps derived from free MODIS imagery using SEBAL-NMT can provide reliable regional ET information for water resource managers.

Continuity of MODIS and VIIRS Snow-Cover Maps during Snowmelt in the Catskill Mountains in New York

NASA Astrophysics Data System (ADS)

Hall, D. K.; Riggs, G. A., Jr.; Roman, M. O.; DiGirolamo, N. E.

2015-12-01

We investigate the local and regional differences and possible biases between the Moderate Resolution Imaging Spectroradiometer (MODIS) and Visible-Infrared Imager Radiometer Suite (VIIRS) snow-cover maps in the winter of 2012 during snowmelt conditions in the Catskill Mountains in New York using a time series of cloud-gap filled daily snow-cover maps. The MODIS Terra instrument has been providing daily global snow-cover maps since February 2000 (Riggs and Hall, 2015). Using the VIIRS instrument, launched in 2011, NASA snow products are being developed based on the heritage MODIS snow-mapping algorithms, and will soon be available to the science community. Continuity of the standard NASA MODIS and VIIRS snow-cover maps is essential to enable environmental-data records (EDR) to be developed for analysis of snow-cover trends using a consistent data record. For this work, we compare daily MODIS and VIIRS snow-cover maps of the Catskill Mountains from 29 February through 14 March 2012. The entire region was snow covered on 29 February and by 14 March the snow had melted; we therefore have a daily time series available to compare normalized difference snow index (NDSI), as an indicator of snow-cover fraction. The MODIS and VIIRS snow-cover maps have different spatial resolutions (500 m for MODIS and 375 m for VIIRS) and different nominal overpass times (10:30 AM for MODIS Terra and 2:30 PM for VIIRS) as well as different cloud masks. The results of this work will provide a quantitative assessment of the continuity of the snow-cover data records for use in development of an EDR of snow cover.http://modis-snow-ice.gsfc.nasa.gov/Riggs, G.A. and D.K. Hall, 2015: MODIS Snow Products User Guide to Collection 6, http://modis-snow-ice.gsfc.nasa.gov/?c=userguides

Lipoprotein composition in HNF1A-MODY: differentiating between HNF1A-MODY and type 2 diabetes.

PubMed

McDonald, Tim J; McEneny, Jane; Pearson, Ewan R; Thanabalasingham, Gaya; Szopa, Magdalena; Shields, Beverley M; Ellard, Sian; Owen, Katharine R; Malecki, Maciej T; Hattersley, Andrew T; Young, Ian S

2012-05-18

The young-onset diabetes seen in HNF1A-MODY is often misdiagnosed as Type 2 diabetes. Type 2 diabetes, unlike HNF1A-MODY, is associated with insulin resistance and a characteristic dyslipidaemia. We aimed to compare the lipid profiles in HNF1A-MODY, Type 2 diabetes and control subjects and to determine if lipids can be used to aid the differential diagnosis of diabetes sub-type. 1) 14 subjects in each group (HNF1A-MODY, Type 2 diabetes and controls) were matched for gender and BMI. Fasting lipid profiles and HDL lipid constituents were compared in the 3 groups. 2) HDL-cholesterol was assessed in a further 267 patients with HNF1A-MODY and 297 patients with a diagnosis of Type 2 diabetes to determine its discriminative value. 1) In HNF1A-MODY subjects, plasma-triglycerides were lower (1.36 vs. 1.93 mmol/l, p = 0.07) and plasma-HDL-cholesterol was higher than in subjects with Type 2 diabetes (1.47 vs. 1.15 mmol/l, p = 0.0008), but was similar to controls. Furthermore, in the isolated HDL; HDL-phospholipid and HDL-cholesterol ester content were higher in HNF1A-MODY, than in Type 2 diabetes (1.59 vs. 1.33 mmol/L, p = 0.04 and 1.10 vs. 0.83 mmol/L, p = 0.019, respectively), but were similar to controls (1.59 vs. 1.45 mmol/L, p = 0.35 and 1.10 vs. 1.21 mmol/L, p = 0.19, respectively). 2) A plasma-HDL-cholesterol > 1.12 mmol/L was 75% sensitive and 64% specific (ROC AUC = 0.76) at discriminating HNF1A-MODY from Type 2 diabetes. The plasma-lipid profiles of HNF1A-MODY and the lipid constituents of HDL are similar to non-diabetic controls. However, HDL-cholesterol was higher in HNF1A-MODY than in Type 2 diabetes and could be used as a biomarker to aid in the identification of patients with HNF1A-MODY. Copyright © 2012 Elsevier B.V. All rights reserved.

Satellite Remote Sensing for Developing Time and Space Resolved Estimates of Ambient Particulate in Cleveland, OH.

PubMed

Kumar, Naresh; Chu, Allen D; Foster, Andrew D; Peters, Thomas; Willis, Robert

2011-09-01

This article empirically demonstrates the use of fine resolution satellite-based aerosol optical depth (AOD) to develop time and space resolved estimates of ambient particulate matter (PM) ≤2.5 µm and ≤10 µm in aerodynamic diameters (PM(2.5) and PM(10), respectively). AOD was computed at three different spatial resolutions, i.e., 2 km (means 2 km × 2 km area at nadir), 5 km, and 10 km, by using the data from MODerate Resolution Imaging Spectroradiometer (MODIS), aboard the Terra and Aqua satellites. Multiresolution AOD from MODIS (AOD(MODIS)) was compared with the in situ measurements of AOD by NASA's AErosol RObotic NETwork (AERONET) sunphotometer (AOD(AERONET)) at Bondville, IL, to demonstrate the advantages of the fine resolution AOD(MODIS) over the 10-km AOD(MODIS), especially for air quality prediction. An instrumental regression that corrects AOD(MODIS) for meteorological conditions was used for developing a PM predictive model.The 2-km AOD(MODIS) aggregated within 0.025° and 15-min intervals shows the best association with the in situ measurements of AOD(AERONET). The 2-km AOD(MODIS) seems more promising to estimate time and space resolved estimates of ambient PM than the 10-km AOD(MODIS), because of better location precision and a significantly greater number of data points across geographic space and time. Utilizing the collocated AOD(MODIS) and PM data in Cleveland, OH, a regression model was developed for predicting PM for all AOD(MODIS) data points. Our analysis suggests that the slope of the 2-km AOD(MODIS) (instrumented on meteorological conditions) is close to unity with the PM monitored on the ground. These results should be interpreted with caution, because the slope of AOD(MODIS) ranges from 0.52 to 1.72 in the site-specific models. In the cross validation of the overall model, the root mean square error (RMSE) of PM(10) was smaller (2.04 µg/m(3) in overall model) than that of PM(2.5) (2.5 µg/m(3)). The predicted PM in the AOD(MODIS) data (∼2.34 million data points) was utilized to develop a systematic grid of daily PM at 5-km spatial resolution with the aid of spatiotemporal Kriging.

Evaluation of the MODIS Aerosol Retrievals over Ocean and Land during CLAMS.

NASA Astrophysics Data System (ADS)

Levy, R. C.; Remer, L. A.; Martins, J. V.; Kaufman, Y. J.; Plana-Fattori, A.; Redemann, J.; Wenny, B.

2005-04-01

The Chesapeake Lighthouse Aircraft Measurements for Satellites (CLAMS) experiment took place from 10 July to 2 August 2001 in a combined ocean-land region that included the Chesapeake Lighthouse [Clouds and the Earth's Radiant Energy System (CERES) Ocean Validation Experiment (COVE)] and the Wallops Flight Facility (WFF), both along coastal Virginia. This experiment was designed mainly for validating instruments and algorithms aboard the Terra satellite platform, including the Moderate Resolution Imaging Spectroradiometer (MODIS). Over the ocean, MODIS retrieved aerosol optical depths (AODs) at seven wavelengths and an estimate of the aerosol size distribution. Over the land, MODIS retrieved AOD at three wavelengths plus qualitative estimates of the aerosol size. Temporally coincident measurements of aerosol properties were made with a variety of sun photometers from ground sites and airborne sites just above the surface. The set of sun photometers provided unprecedented spectral coverage from visible (VIS) to the solar near-infrared (NIR) and infrared (IR) wavelengths. In this study, AOD and aerosol size retrieved from MODIS is compared with similar measurements from the sun photometers. Over the nearby ocean, the MODIS AOD in the VIS and NIR correlated well with sun-photometer measurements, nearly fitting a one-to-one line on a scatterplot. As one moves from ocean to land, there is a pronounced discontinuity of the MODIS AOD, where MODIS compares poorly to the sun-photometer measurements. Especially in the blue wavelength, MODIS AOD is too high in clean aerosol conditions and too low under larger aerosol loadings. Using the Second Simulation of the Satellite Signal in the Solar Spectrum (6S) radiative code to perform atmospheric correction, the authors find inconsistency in the surface albedo assumptions used by the MODIS lookup tables. It is demonstrated how the high bias at low aerosol loadings can be corrected. By using updated urban/industrial aerosol climatology for the MODIS lookup table over land, it is shown that the low bias for larger aerosol loadings can also be corrected. Understanding and improving MODIS retrievals over the East Coast may point to strategies for correction in other locations, thus improving the global quality of MODIS. Improvements in regional aerosol detection could also lead to the use of MODIS for monitoring air pollution.

Terra and Aqua MODIS Design, Radiometry, and Geometry in Support of Land Remote Sensing

NASA Technical Reports Server (NTRS)

Xiong, Xiaoxiong; Wolfe, Robert; Barnes, William; Guenther, Bruce; Vermote, Eric; Saleous, Nazmi; Salomonson, Vincent

2011-01-01

The NASA Earth Observing System (EOS) mission includes the construction and launch of two nearly identical Moderate Resolution Imaging Spectroradiometer (MODIS) instruments. The MODIS proto-flight model (PFM) is onboard the EOS Terra satellite (formerly EOS AM-1) launched on December 18, 1999 and hereafter referred to as Terra MODIS. Flight model-1 (FM1) is onboard the EOS Aqua satellite (formerly EOS PM-1) launched on May 04, 2002 and referred to as Aqua MODIS. MODIS was developed based on the science community s desire to collect multiyear continuous datasets for monitoring changes in the Earth s land, oceans and atmosphere, and the human contributions to these changes. It was designed to measure discrete spectral bands, which includes many used by a number of heritage sensors, and thus extends the heritage datasets to better understand both long- and short-term changes in the global environment (Barnes and Salomonson 1993; Salomonson et al. 2002; Barnes et al. 2002). The MODIS development, launch, and operation were managed by NASA/Goddard Space Flight Center (GSFC), Greenbelt, Maryland. The sensors were designed, built, and tested by Raytheon/ Santa Barbara Remote Sensing (SBRS), Goleta, California. Each MODIS instrument offers 36 spectral bands, which span the spectral region from the visible (0.41 m) to long-wave infrared (14.4 m). MODIS collects data at three different nadir spatial resolutions: 0.25, 0.5, and 1 km. Key design specifications, such as spectral bandwidths, typical scene radiances, required signal-to-noise ratios (SNR) or noise equivalent temperature differences (NEDT), and primary applications of each MODIS spectral band are summarized in Table 7.1. These parameters were the basis for the MODIS design. More details on the evolution of the NASA EOS and development of the MODIS instruments are provided in Chap. 1. This chapter focuses on the MODIS sensor design, radiometry, and geometry as they apply to land remote sensing. With near-daily coverage of the Earth's surface, MODIS provides comprehensive measurements that enable scientists and policy makers to better understand and effectively manage the natural resources on both regional and global scales. Terra, the first large multisensor EOS satellite, is operated in a 10:30 am (local equatorial crossing time, descending southwards) polar orbit. Aqua, the second multisensor EOS satellite is operated in a 1:30 pm (local equatorial crossing time, ascending northwards) polar orbit. With complementing morning and afternoon observations, the Terra and Aqua MODIS, together with other sensors housed on both satellites, have greatly improved our understanding of the dynamics of the global environmental system.

Multi-Scale Analysis of Trends in Northeastern Temperate Forest Springtime Phenology

NASA Astrophysics Data System (ADS)

Moon, M.; Melaas, E. K.; Sulla-menashe, D. J.; Friedl, M. A.

2017-12-01

The timing of spring leaf emergence is highly variable in many ecosystems, exerts first-order control growing season length, and significantly modulates seasonally-integrated photosynthesis. Numerous studies have reported trends toward earlier spring phenology in temperate forests, with some papers indicating that this trend is also leading to increased carbon uptake. At broad spatial scales, however, most of these studies have used data from coarse spatial resolution instruments such as MODIS, which does not resolve ecologically important landscape-scale patterns in phenology. In this work, we examine how long-term trends in spring phenology differ across three data sources acquired at different scales of measurements at the Harvard Forest in central Massachusetts. Specifically, we compared trends in the timing of phenology based on long-term in-situ measurements of phenology, estimates based on eddy-covariance measurements of net carbon uptake transition dates, and from two sources of satellite-based remote sensing (MODIS and Landsat) land surface phenology (LSP) data. Our analysis focused on the flux footprint surrounding the Harvard Forest Environmental Measurements (EMS) tower. Our results reveal clearly defined trends toward earlier springtime phenology in Landsat LSP and in the timing of tower-based net carbon uptake. However, we find no statistically significant trend in springtime phenology measured from MODIS LSP data products, possibly because the time series of MODIS observations is relatively short (13 years). The trend in tower-based transition data exhibited a larger negative value than the trend derived from Landsat LSP data (-0.42 and -0.28 days per year for 21 and 28 years, respectively). More importantly, these results have two key implications regarding how changes in spring phenology are impacting carbon uptake at landscape-scale. First, long-term trends in spring phenology can be quite different, depending on what data source is used to estimate the trend, and 2) the response of carbon uptake to climate change may be more sensitive than the response of land surface phenology itself.

Energy crop mapping with enhanced TM/MODIS time series in the BCAP agricultural lands

NASA Astrophysics Data System (ADS)

Wang, Cuizhen; Fan, Qian; Li, Qingting; SooHoo, William M.; Lu, Linlin

2017-02-01

Since the mid-2000s, agricultural lands in the United States have been undergoing rapid change to meet the increasing bioenergy demand. In 2009 the USDA Biomass Crop Assistance Program (BCAP) was established. In its Project Area 1, land owners are financially supported to grow perennial prairie grasses (switchgrass) in their row-crop lands. To promote the program, this study tested the feasibility of biomass crop mapping based on unique timings of crop development. With a previously published data fusion algorithm - the Enhanced Spatial and Temporal Adaptive Reflectance Fusion Model (ESTARFM), a 10-day normalized difference vegetation index (NDVI) time series in 2007 was established by fusing MODIS reflectance into TM image series. Two critical dates - peak growing (PG) and peak drying (PD) - were extracted and a unique "PG-0-PD" timing sequence was defined for each crop. With a knowledge-based decision tree approach, the classification of enhanced TM/MODIS time series reached an overall accuracy of 76% against the USDA Crop Data layer (CDL). Especially, our results showed that winter wheat single cropping and wheat-soybean double cropping were much better classified, which may provide additional information for the CDL product. More importantly, this study extracted the first spatial layer of warm-season prairie grasses that have not been published in any national land cover products, which could serve as a base map for decision making of bioenergy land use in BCAP land.

A hybrid color mapping approach to fusing MODIS and Landsat images for forward prediction

USDA-ARS?s Scientific Manuscript database

We present a new, simple, and efficient approach to fusing MODIS and Landsat images. It is well known that MODIS images have high temporal resolution and low spatial resolution whereas Landsat images are just the opposite. Similar to earlier approaches, our goal is to fuse MODIS and Landsat images t...

N-MODY: A Code for Collisionless N-body Simulations in Modified Newtonian Dynamics

NASA Astrophysics Data System (ADS)

Londrillo, Pasquale; Nipoti, Carlo

2011-02-01

N-MODY is a parallel particle-mesh code for collisionless N-body simulations in modified Newtonian dynamics (MOND). N-MODY is based on a numerical potential solver in spherical coordinates that solves the non-linear MOND field equation, and is ideally suited to simulate isolated stellar systems. N-MODY can be used also to compute the MOND potential of arbitrary static density distributions. A few applications of N-MODY indicate that some astrophysically relevant dynamical processes are profoundly different in MOND and in Newtonian gravity with dark matter.

Enhancement of the MODIS Daily Snow Albedo Product

NASA Technical Reports Server (NTRS)

Hall, Dorothy K.; Schaaf, Crystal B.; Wang, Zhuosen; Riggs, George A.

2009-01-01

The MODIS daily snow albedo product is a data layer in the MOD10A1 snow-cover product that includes snow-covered area and fractional snow cover as well as quality information and other metadata. It was developed to augment the MODIS BRDF/Albedo algorithm (MCD43) that provides 16-day maps of albedo globally at 500-m resolution. But many modelers require daily snow albedo, especially during the snowmelt season when the snow albedo is changing rapidly. Many models have an unrealistic snow albedo feedback in both estimated albedo and change in albedo over the seasonal cycle context, Rapid changes in snow cover extent or brightness challenge the MCD43 algorithm; over a 16-day period, MCD43 determines whether the majority of clear observations was snow-covered or snow-free then only calculates albedo for the majority condition. Thus changes in snow albedo and snow cover are not portrayed accurately during times of rapid change, therefore the current MCD43 product is not ideal for snow work. The MODIS daily snow albedo from the MOD10 product provides more frequent, though less robust maps for pixels defined as "snow" by the MODIS snow-cover algorithm. Though useful, the daily snow albedo product can be improved using a daily version of the MCD43 product as described in this paper. There are important limitations to the MOD10A1 daily snow albedo product, some of which can be mitigated. Utilizing the appropriate per-pixel Bidirectional Reflectance Distribution Functions (BRDFs) can be problematic, and correction for anisotropic scattering must be included. The BRDF describes how the reflectance varies with view and illumination geometry. Also, narrow-to-broadband conversion specific for snow on different surfaces must be calculated and this can be difficult. In consideration of these limitations of MOD10A1, we are planning to improve the daily snow albedo algorithm by coupling the periodic per-pixel snow albedo from MCD43, with daily surface ref|outanoom, In this paper, we compare a daily version of MCD43B3 with the daily albedo from MOD10A1. and MCD43B3 with a 16-day average of MOD10A1, over Greenland. We also discuss some near-future planned enhancements to MOD10A1.

Mutations of maturity-onset diabetes of the young (MODY) genes in Thais with early-onset type 2 diabetes mellitus.

PubMed

Plengvidhya, Nattachet; Boonyasrisawat, Watip; Chongjaroen, Nalinee; Jungtrakoon, Prapaporn; Sriussadaporn, Sutin; Vannaseang, Sathit; Banchuin, Napatawn; Yenchitsomanus, Pa-thai

2009-06-01

Six known genes responsible for maturity-onset diabetes of the young (MODY) were analysed to evaluate the prevalence of their mutations in Thai patients with MODY and early-onset type 2 diabetes. Fifty-one unrelated probands with early-onset type 2 diabetes, 21 of them fitted into classic MODY criteria, were analysed for nucleotide variations in promoters, exons, and exon-intron boundaries of six known MODY genes, including HNF-4alpha, GCK, HNF-1alpha, IPF-1, HNF-1beta, and NeuroD1/beta2, by the polymerase chain reaction-single strand conformation polymorphism (PCR-SSCP) method followed by direct DNA sequencing. Missense mutations or mutations located in regulatory region, which were absent in 130 chromosomes of non-diabetic controls, were classified as potentially pathogenic mutations. We found that mutations of the six known MODY genes account for a small proportion of classic MODY (19%) and early-onset type 2 diabetes (10%) in Thais. Five of these mutations are novel including GCK R327H, HNF-1alpha P475L, HNF-1alphaG554fsX556, NeuroD1-1972 G > A and NeuroD1 A322N. Mutations of IPF-1 and HNF-1beta were not identified in the studied probands. Mutations of the six known MODY genes may not be a major cause of MODY and early-onset type 2 diabetes in Thais. Therefore, unidentified genes await discovery in a majority of Thai patients with MODY and early-onset type 2 diabetes.

Preliminary validation of the military low back pain questionnaire.

PubMed

Roy, Tanja C; Fish, Karen L; Lopez, Heather P; Piva, Sara R

2014-02-01

Soldiers must perform a variety of physical tasks that the civilian population does not. The Modified Oswestry Disability Index (M-ODI) is the most widely used measure of function in patients with low back pain but does not include military tasks. The Military Low Back Pain Questionnaire (MBQ) was developed by military Physical Therapists to include tasks such as wearing body armor. The purpose of this study was to provide preliminary evidence for the reliability, responsiveness, and validity of the MBQ in nondeployed Soldiers. The MBQ had good reliability compared to the M-ODI. The inter-rater correlation coefficient for the M-ODI was 0.79 and 0.75 for the MBQ. Cronbach's alpha was 0.75 and 0.85 for the M-ODI and MBQ, respectively. The minimal detectable change for the M-ODI was 21.03 and 22.97 for the MBQ. Responsiveness was assessed using a global rating of change; area under the curve for the M-ODI was 0.82 and 0.90 for the MBQ. The correlation between the M-ODI and the MBQ was r = 0.80 indicating good concurrent validity. The MBQ was as reliable as the M-ODI in an Army population. There were trends in the psychometrics suggesting the MBQ may be more sensitive to change than the M-ODI in this population. Reprint & Copyright © 2014 Association of Military Surgeons of the U.S.

MODIS tasselled cap: land cover characteristics expressed through transformed MODIS data

Treesearch

S. E. Lobser; W. B. Cohen

2007-01-01

The tasselled cap concept is extended to Moderate Resolution Imaging Spectroradiometer (MODIS) Nadir BRDF-Adjusted Reflectance (NBAR, MOD43) data. The transformation is based on a rigid rotation of principal component axes (PCAs) derived from a global sample spanning one full year of NBAR 16-day composites. To provide a standard for MODIS tasselled cap axes, we...

View Angle Effects on MODIS Snow Mapping in Forests

NASA Technical Reports Server (NTRS)

Xin, Qinchuan; Woodcock, Curtis E.; Liu, Jicheng; Tan, Bin; Melloh, Rae A.; Davis, Robert E.

2012-01-01

Binary snow maps and fractional snow cover data are provided routinely from MODIS (Moderate Resolution Imaging Spectroradiometer). This paper investigates how the wide observation angles of MODIS influence the current snow mapping algorithm in forested areas. Theoretical modeling results indicate that large view zenith angles (VZA) can lead to underestimation of fractional snow cover (FSC) by reducing the amount of the ground surface that is viewable through forest canopies, and by increasing uncertainties during the gridding of MODIS data. At the end of the MODIS scan line, the total modeled error can be as much as 50% for FSC. Empirical analysis of MODIS/Terra snow products in four forest sites shows high fluctuation in FSC estimates on consecutive days. In addition, the normalized difference snow index (NDSI) values, which are the primary input to the MODIS snow mapping algorithms, decrease as VZA increases at the site level. At the pixel level, NDSI values have higher variances, and are correlated with the normalized difference vegetation index (NDVI) in snow covered forests. These findings are consistent with our modeled results, and imply that consideration of view angle effects could improve MODIS snow monitoring in forested areas.

Space environment's effect on MODIS calibration

NASA Astrophysics Data System (ADS)

Dodd, J. L.; Wenny, B. N.; Chiang, K.; Xiong, X.

2010-09-01

The MODerate resolution Imaging Spectroradiometer flies on board the Earth Observing System (EOS) satellites Terra and Aqua in a sun-synchronous orbit that crosses the equator at 10:30 AM and 2:30 PM, respectively, at a low earth orbit (LEO) altitude of 705 km. Terra was launched on December 18,1999 and Aqua was launched on May 4, 2002. As the MODIS instruments on board these satellites continue to operate beyond the design lifetime of six years, the cumulative effect of the space environment on MODIS and its calibration is of increasing importance. There are several aspects of the space environment that impact both the top of atmosphere (TOA) calibration and, therefore, the final science products of MODIS. The south Atlantic anomaly (SAA), spacecraft drag, extreme radiative and thermal environment, and the presence of orbital debris have the potential to significantly impact both MODIS and the spacecraft, either directly or indirectly, possibly resulting in data loss. Efforts from the Terra and Aqua Flight Operations Teams (FOT), the MODIS Instrument Operations Team (IOT), and the MODIS Characterization Support Team (MCST) prevent or minimize external impact on the TOA calibrated data. This paper discusses specific effects of the space environment on MODIS and how they are minimized.

eMODIS Expedited: Overview of a Near Real Time MODIS Production System for Operational Vegetation Monitoring

NASA Astrophysics Data System (ADS)

Jenkerson, C.; Meyer, D. J.; Werpy, J.; Evenson, K.; Merritt, M.

2010-12-01

The expedited MODIS, or eMODIS production system derives near-real time Normalized Difference Vegetation Index (NDVI) from Moderate Resolution Imaging Spectroradiometer (MODIS) surface reflectance provided by the Land and Atmosphere Near-real time Capability for EOS (LANCE). There are currently three regions covered by this U.S. Geological Survey (USGS) capability, including the continental U.S., Africa, and the Central America/Caribbean regions. Each of the eMODIS production streams is configured to output its data in map projections, compositing intervals, spatial resolutions, and file formats specific to its region and user community. The challenges of processing 1,000-meter, 500-m, and especially 250-m products by midnight on the last day of a product interval have been met with increasingly effective software and system architecture. An anonymous file transfer protocol (FTP) distribution site (ftp://emodisftp.cr.usgs.gov/eMODIS) allows users direct access to eMODIS NDVI products for operational (near-real time) monitoring of vegetation conditions like drought, crop failure, insect infestation, and other threats, thus supporting subsequent early warning of famine and the targeting of vulnerable populations for insecure food situations.

History and Future for the Happy Marriage between the MODIS Land team and Fluxnet

NASA Astrophysics Data System (ADS)

Running, S. W.

2015-12-01

When I wrote the proposal to NASA in 1988 for daily global evapotranspiration and gross primary production algorithms for the MODIS sensor, I had no validation plan. Fluxnet probably saved my MODIS career by developing a global network of rigorously calibrated towers measuring water and carbon fluxes over a wide variety of ecosystems that I could not even envision at the time that first proposal was written. However my enthusiasm for Fluxnet was not reciprocated by the Fluxnet community until we began providing 7 x 7 pixel MODIS Land datasets exactly over each of their towers every 8 days, without them having to crawl thru the global datasets and make individual orders. This system, known informally as the MODIS ASCII cutouts, began in 2002 and operates at the Oak Ridge DAAC to this day, cementing a mutually beneficial data interchange between the Fluxnet and remote sensing communities. This talk will briefly discuss the history of MODIS validation with flux towers, and flux spatial scaling with MODIS data. More importantly I will detail the future continuity of global biophysical datasets in the post-MODIS era, and what next generation sensors will provide.

Improvements in Night-Time Low Cloud Detection and MODIS-Style Cloud Optical Properties from MSG SEVIRI

NASA Technical Reports Server (NTRS)

Wind, Galina (Gala); Platnick, Steven; Riedi, Jerome

2011-01-01

The MODIS cloud optical properties algorithm (MOD06IMYD06 for Terra and Aqua MODIS, respectively) slated for production in Data Collection 6 has been adapted to execute using available channels on MSG SEVIRI. Available MODIS-style retrievals include IR Window-derived cloud top properties, using the new Collection 6 cloud top properties algorithm, cloud optical thickness from VISINIR bands, cloud effective radius from 1.6 and 3.7Jlm and cloud ice/water path. We also provide pixel-level uncertainty estimate for successful retrievals. It was found that at nighttime the SEVIRI cloud mask tends to report unnaturally low cloud fraction for marine stratocumulus clouds. A correction algorithm that improves detection of such clouds has been developed. We will discuss the improvements to nighttime low cloud detection for SEVIRI and show examples and comparisons with MODIS and CALIPSO. We will also show examples of MODIS-style pixel-level (Level-2) cloud retrievals for SEVIRI with comparisons to MODIS.

MODIS Instrument Operation and Calibration Improvements

NASA Technical Reports Server (NTRS)

Xiong, X.; Angal, A.; Madhavan, S.; Link, D.; Geng, X.; Wenny, B.; Wu, A.; Chen, H.; Salomonson, V.

2014-01-01

Terra and Aqua MODIS have successfully operated for over 14 and 12 years since their respective launches in 1999 and 2002. The MODIS on-orbit calibration is performed using a set of on-board calibrators, which include a solar diffuser for calibrating the reflective solar bands (RSB) and a blackbody for the thermal emissive bands (TEB). On-orbit changes in the sensor responses as well as key performance parameters are monitored using the measurements of these on-board calibrators. This paper provides an overview of MODIS on-orbit operation and calibration activities, and instrument long-term performance. It presents a brief summary of the calibration enhancements made in the latest MODIS data collection 6 (C6). Future improvements in the MODIS calibration and their potential applications to the S-NPP VIIRS are also discussed.

Resolution Enhancement of MODIS-derived Water Indices for Studying Persistent Flooding

NASA Astrophysics Data System (ADS)

Underwood, L. W.; Kalcic, M. T.; Fletcher, R. M.

2012-12-01

Monitoring coastal marshes for persistent flooding and salinity stress is a high priority issue in Louisiana. Remote sensing can identify environmental variables that can be indicators of marsh habitat conditions, and offer timely and relatively accurate information for aiding wetland vegetation management. Monitoring activity accuracy is often limited by mixed pixels which occur when areas represented by the pixel encompasses more than one cover type. Mixtures of marsh grasses and open water in 250m Moderate Resolution Imaging Spectroradiometer (MODIS) data can impede flood area estimation. Flood mapping of such mixtures requires finer spatial resolution data to better represent the cover type composition within 250m MODIS pixel. Fusion of MODIS and Landsat can improve both spectral and temporal resolution of time series products to resolve rapid changes from forcing mechanisms like hurricane winds and storm surge. For this study, using a method for estimating sub-pixel values from a MODIS time series of a Normalized Difference Water Index (NDWI), using temporal weighting, was implemented to map persistent flooding in Louisiana coastal marshes. Ordinarily NDWI computed from daily 250m MODIS pixels represents a mixture of fragmented marshes and water. Here, sub-pixel NDWI values were derived for MODIS data using Landsat 30-m data. Each MODIS pixel was disaggregated into a mixture of the eight cover types according to the classified image pixels falling inside the MODIS pixel. The Landsat pixel means for each cover type inside a MODIS pixel were computed for the Landsat data preceding the MODIS image in time and for the Landsat data succeeding the MODIS image. The Landsat data were then weighted exponentially according to closeness in date to the MODIS data. The reconstructed MODIS data were produced by summing the product of fractional cover type with estimated NDWI values within each cover type. A new daily time series was produced using both the reconstructed 250-m MODIS, with enhanced features, and the approximated daily 30-m high-resolution image based on Landsat data. The algorithm was developed and tested over the Calcasieu-Sabine Basin, which was heavily inundated by storm surge from Hurricane Ike to study the extent and duration of flooding following the storm. Time series for 2000-2009, covering flooding events by Hurricane Rita in 2005 and Hurricane Ike in 2008, were derived. High resolution images were formed for all days in 2008 between the first cloud free Landsat scene and the last cloud-free Landsat scene. To refine and validate flooding maps, each time series was compared to Louisiana Coastwide Reference Monitoring System (CRMS) station water levels adjusted to marsh to optimize thresholds for MODIS-derived time series of NDWI. Seasonal fluctuations were adjusted by subtracting ten year average NDWI for marshes, excluding the hurricane events. Results from different NDWI indices and a combination of indices were compared. Flooding persistence that was mapped with higher-resolution data showed some improvement over the original MODIS time series estimates. The advantage of this novel technique is that improved mapping of extent and duration of inundation can be provided.

Resolution Enhancement of MODIS-Derived Water Indices for Studying Persistent Flooding

NASA Technical Reports Server (NTRS)

Underwood, L. W.; Kalcic, Maria; Fletcher, Rose

2012-01-01

Monitoring coastal marshes for persistent flooding and salinity stress is a high priority issue in Louisiana. Remote sensing can identify environmental variables that can be indicators of marsh habitat conditions, and offer timely and relatively accurate information for aiding wetland vegetation management. Monitoring activity accuracy is often limited by mixed pixels which occur when areas represented by the pixel encompasses more than one cover type. Mixtures of marsh grasses and open water in 250m Moderate Resolution Imaging Spectroradiometer (MODIS) data can impede flood area estimation. Flood mapping of such mixtures requires finer spatial resolution data to better represent the cover type composition within 250m MODIS pixel. Fusion of MODIS and Landsat can improve both spectral and temporal resolution of time series products to resolve rapid changes from forcing mechanisms like hurricane winds and storm surge. For this study, using a method for estimating sub-pixel values from a MODIS time series of a Normalized Difference Water Index (NDWI), using temporal weighting, was implemented to map persistent flooding in Louisiana coastal marshes. Ordinarily NDWI computed from daily 250m MODIS pixels represents a mixture of fragmented marshes and water. Here, sub-pixel NDWI values were derived for MODIS data using Landsat 30-m data. Each MODIS pixel was disaggregated into a mixture of the eight cover types according to the classified image pixels falling inside the MODIS pixel. The Landsat pixel means for each cover type inside a MODIS pixel were computed for the Landsat data preceding the MODIS image in time and for the Landsat data succeeding the MODIS image. The Landsat data were then weighted exponentially according to closeness in date to the MODIS data. The reconstructed MODIS data were produced by summing the product of fractional cover type with estimated NDWI values within each cover type. A new daily time series was produced using both the reconstructed 250-m MODIS, with enhanced features, and the approximated daily 30-m high-resolution image based on Landsat data. The algorithm was developed and tested over the Calcasieu-Sabine Basin, which was heavily inundated by storm surge from Hurricane Ike to study the extent and duration of flooding following the storm. Time series for 2000-2009, covering flooding events by Hurricane Rita in 2005 and Hurricane Ike in 2008, were derived. High resolution images were formed for all days in 2008 between the first cloud free Landsat scene and the last cloud-free Landsat scene. To refine and validate flooding maps, each time series was compared to Louisiana Coastwide Reference Monitoring System (CRMS) station water levels adjusted to marsh to optimize thresholds for MODIS-derived time series of NDWI. Seasonal fluctuations were adjusted by subtracting ten year average NDWI for marshes, excluding the hurricane events. Results from different NDWI indices and a combination of indices were compared. Flooding persistence that was mapped with higher-resolution data showed some improvement over the original MODIS time series estimates. The advantage of this novel technique is that improved mapping of extent and duration of inundation can be provided.

Fractional Snowcover Estimates from Earth Observing System (EOS) Terra and Aqua Moderate Resolution Imaging Spectroradiometer (MODIS)

NASA Technical Reports Server (NTRS)

Salomonson, Vincent V.

2002-01-01

The Moderate Resolution Imaging Spectroradiometer (MODIS) on the NASA Earth Observing System (EOS) Terra and Aqua missions has shown considerable capability for mapping snowcover. The typical approach that has used, along with other criteria, the Normalized Snow Difference Index (NDSI) that takes the difference between 500 meter observations at 1.64 micrometers (MODIS band 6) and 0.555 micrometers (MODIS band 4) over the sum of these observations to determine whether MODIS pixels are snowcovered or not in mapping the extent of snowcover. For many hydrological and climate studies using remote sensing of snowcover, it is desirable to assess if the MODIS snowcover observations could not be enhanced by providing the fraction of snowcover in each MODIS observation (pixel). Pursuant to this objective studies have been conducted to assess whether there is sufficient "signal%o in the NDSI parameter to provide useful estimates of fractional snowcover in each MODIS 500 meter pixel. To accomplish this objective high spatial resolution (30 meter) Landsat snowcover observations were used and co-registered with MODIS 500 meter pixels. The NDSI approach was used to assess whether a Landsat pixel was or was not snowcovered. Then the number of snowcovered Landsat pixels within a MODIS pixel was used to determine the fraction of snowcover within each MODIS pixel. The e results were then used to develop statistical relationships between the NDSI value for each 500 meter MODIS pixel and the fraction of snowcover in the MODIS pixel. Such studies were conducted for three widely different areas covered by Landsat scenes in Alaska, Russia, and the Quebec Province in Canada. The statistical relationships indicate that a 10 percent accuracy can be attained. The variability in the statistical relationship for the three areas was found to be remarkably similar (-0.02 for mean error and less than 0.01 for mean absolute error and standard deviation). Independent tests of the relationships were accomplished by taking the relationship of fractional snow-cover to NDSI from one area (e.g., Alaska) and testing it on the other two areas (e.g. Russia and Quebec). Again the results showed that fractional snow-cover can be estimated to 10 percent. The results have been shown to have advantages over other published fractional snowcover algorithms applied to MODIS data. Most recently the fractional snow-cover algorithm has been applied using 500-meter observations over the state of Colorado for a period spanning 25 days. The results exhibit good behavior in mapping the spatial and temporal variability in snowcover over that 25-day period. Overall these studies indicate that robust estimates of fractional snow-cover can be attained using the NDSI parameter over areas extending in size from watersheds relatively large compared to MODIS pixels to global land cover. Other refinements to this approach as well as different approaches are being examined for mapping fractional snow-cover using MODIS observations.

N-MODY: a code for collisionless N-body simulations in modified Newtonian dynamics.

NASA Astrophysics Data System (ADS)

Londrillo, P.; Nipoti, C.

We describe the numerical code N-MODY, a parallel particle-mesh code for collisionless N-body simulations in modified Newtonian dynamics (MOND). N-MODY is based on a numerical potential solver in spherical coordinates that solves the non-linear MOND field equation, and is ideally suited to simulate isolated stellar systems. N-MODY can be used also to compute the MOND potential of arbitrary static density distributions. A few applications of N-MODY indicate that some astrophysically relevant dynamical processes are profoundly different in MOND and in Newtonian gravity with dark matter.

Monogenic Diabetes

MedlinePlus

... monogenic diabetes? Maturity-onset Diabetes of the Young (MODY) MODY is the most common form of monogenic diabetes. ... teenagers but sometimes is not found until adulthood. MODY can be mild or severe, depending on which ...

Sensor On-orbit Calibration and Characterization Using Spacecraft Maneuvers

NASA Technical Reports Server (NTRS)

Xiong, X.; Butler, Jim; Barnes, W. L.; Guenther, B.

2007-01-01

Spacecraft flight operations often require activities that involve different kinds of maneuvers for orbital adjustments (pitch, yaw, and roll). Different maneuvers, when properly planned and scheduled, can also be applied to support and/or to perform on-board sensor calibration and characterization. This paper uses MODIS (Moderate Resolution Imaging Spectroradiometer) as an example to illustrate applications of spacecraft maneuvers for Earth-observing sensors on-orbit calibration and characterization. MODIS is one of the key instruments for NASA's Earth Observing System (EOS) currently operated on-board the EOS Terra and Aqua spacecraft launched in December 1999 and May 2002, respectively. Since their launch, both Terra and Aqua spacecraft have made a number of maneuvers, specially the yaw and roll maneuvers, to support the MODIS on-orbit calibration and characterization. For both Terra and Aqua MODIS, near-monthly spacecraft roll maneuvers are executed for lunar observations. These maneuvers are carefully scheduled so that the lunar phase angles are nearly identical for each sensor's lunar observations. The lunar observations are used to track MODIS reflective solar bands (RSB) calibration stability and to inter-compare Terra and Aqua MODIS RSB calibration consistency. To date, two sets of yaw maneuvers (each consists of two series of 8 consecutive yaws) by the Terra spacecraft and one set by the Aqua spacecraft have been performed to validate MODIS solar diffuser (SD) bi-directional reflectance factor (BRF) and to derive SD screen transmission. Terra spacecraft pitch maneuvers, first made on March 26, 2003 and the second on April 14, 2003 (with the Moon in the spacecraft nadir view), have been applied to characterize MODIS thermal emissive bands (TEB) response versus scan angle (RVS). This is particularly important since the pre-launch TEB RSV measurements made by the sensor vendor were not successful. Terra MODIS TEB RVS obtained from pitch maneuvers have been used in the current LIB calibration algorithm. Lunq observations from pitch maneuvers also provided information to cross-calibrate MODIS with other sensors (MISR and ASTER) on the same platform. We will provide a summary of MODIS maneuver activities and their applications for MODIS calibration and characterization. The results and lessons learned discussed in this paper from MODIS maneuver activities will provide useful insights into future spacecraft and sensor operation.

Statistical Inter-comparison Analysis of MODIS, MISR, and AERONET Over the Middle East and North Africa

NASA Astrophysics Data System (ADS)

Farahat, A.; El-Askary, H. M.; Kalashnikova, O. V.; Garay, M. J.

2016-12-01

Several space-borne and ground based sensors can provide long-standing monitoring of aerosols characteristics, but inconsistencies among different sensors reduce data reliability and lead to uncertainty in analysing long-term data. In this study, we perform statistical inter-comparison of the Aerosol Optical Depth (AOD) among MISR, MODIS/Terra, MODIS/Aqua and Aerosol Robotic Network (AERONET) over seven sites located in the Middle East and North Africa during the period (1995 -2015). The sites are categorized into two regions based on their geographic location and possible dominate particles composition. Compared to MISR, MODIS and AERONET AOD data retrievals indicate larger uncertainty over all sites with a larger daily variability in MODIS measurements. In general, MISR and MODIS AOD matches during high dust seasons but MODIS tends to under estimate the AOD values on low dust seasons. While Terra measurements give a negative trend over the time series at the dust-dominated sites, Aqua, MISR and AERONET show a positive trend. In general, MODIS/Aqua displays stable measurements over the time line at the dust dominated sites. MODIS/Terra, MODIS/Aqua and MISR display a positive trend over Cairo_EMA site while AERONET shows a negative trend over the time line. Terra was found to overestimate AOD during 2002 - 2004 and underestimates it after 2004. We also observe a deviation between Aqua and Terra regardless of the region and data sampling. Excluding Bahrain and Cairo_EMA for low data retrievals the performance of MODIS tends to be similar over all region with 68 % of the retrieved AOD values fall within the confidence range of the AERONET matched data, within global averaged level (> 66 %). MISR indicated better data performance with 72 % falls within the same confidence range. Complimentary MISR and MODIS data was found to provide a better picture of dust storms evolution over Arabian Peninsula and the Middle East. Acknowledgement The authors would like to acknowledge the support provided by the Deanship of Scientific Research (DSR) at the King Fahd University of Petroleum and Minerals (KFUPM) for funding this work through project No. IN141051.

Daily estimates of fire danger using multitemporal satellite MODIS data: the experience of FIRE-SAT in the Basilicata Region (Italy)

NASA Astrophysics Data System (ADS)

Lanorte, R.; Lasaponara, R.; De Santis, F.; Aromando, A.; Nole, G.

2012-04-01

Daily estimates of fire danger using multitemporal satellite MODIS data: the experience of FIRE-SAT in the Basilicata Region (Italy) A. Lanorte, F. De Santis , A. Aromando, G. Nolè, R. Lasaponara, CNR-IMAA, Potenza, Italy In the recent years the Basilicata Region (Southern Italy) has been characterized by an increasing incidence of fire disturbance which also tends to affect protected (Regional and national parks) and natural vegetated areas. FIRE_SAT project has been funded by the Civil Protection of the Basilicata Region in order to set up a low cost methodology for fire danger/risk monitoring based on satellite Earth Observation techniques. To this aim, NASA Moderate Resolution Imaging Spectroradiometer (MODIS) data were used. The spectral capability and daily availability makes MODIS products especially suitable for estimating the variations of fuel characteristics. This work presents new significant results obtained in the context of FIRE-SAT project. In order to obtain a dynamical indicator of fire susceptibility based on multitemporal MODIS satellite data, up-datable in short-time periods (daily), we used the spatial/temporal variations of following parameters: (1) Relative Greenness Index (2) Live and dead fuel moisture content (3) Temperature In particular, the dead fuel moisture content is a key factor in fire ignition. Dead fuel moisture dynamics are significantly faster than those observed for live fuel. Dead fine vegetation exhibits moisture and density values dependent on rapid atmospheric changes and strictly linked to local meteorological conditions. For this reason, commonly, the estimation of dead fuel moisture content is based on meteorological variables. In this study we propose to use MODIS data to estimate meteorological data (specifically Relative Humidity) at an adequate spatial and temporal resolution. The assessment of dead fuel moisture content plays a decisive role in determining a fire dynamic danger index in combination with other factors. This greatly improves the reliability of fire danger maps obtained on the basis of a integrated approach of the dynamic factors mentioned above and the static factors (fuel physical properties, morphological parameters and social-historical factors). The validation of the fire danger indices was carried out by the use of statistics of occurred forest fires. The validation results show satisfactory agreement with the fire danger map taking into account that . fire events are indirect indicator of fire danger; indeed, many factor influence fire ignition and spread such as human pressure, fire-fighting conditions, wind, etc.. Therefore, in this study we have defined and used several fire statistic data useful for the validation of the fire danger maps in order to create the basic elements for the design of a validation protocol.

Creating a consistent dark-target aerosol optical depth record from MODIS and VIIRS

NASA Astrophysics Data System (ADS)

Levy, R. C.; Mattoo, S.; Munchak, L. A.; Patadia, F.; Holz, R.

2014-12-01

To answer fundamental questions about our changing climate, we must quantify how aerosols are changing over time. This is a global question that requires regional characterization, because in some places aerosols are increasing and in others they are decreasing. Although NASA's Moderate resolution Imaging Spectrometer (MODIS) sensors have provided quantitative information about global aerosol optical depth (AOD) for more than a decade, the creation of an aerosol climate data record (CDR) requires consistent multi-decadal data. With the Visible and Infrared Imaging Radiometer Suite (VIIRS) aboard Suomi-NPP, there is potential to continue the MODIS aerosol time series. Yet, since the operational VIIRS aerosol product is produced by a different algorithm, it is not suitable to continue MODIS to create an aerosol CDR. Therefore, we have applied the MODIS Dark-target (DT) algorithm to VIIRS observations, taking into account the slight differences in wavelengths, resolutions and geometries between the two sensors. More specifically, we applied the MODIS DT algorithm to a dataset known as the Intermediate File Format (IFF), created by the University of Wisconsin. The IFF is produced for both MODIS and VIIRS, with the idea that a single (MODIS-like or ML) algorithm can be run either dataset, which can in turn be compared to the MODIS Collection 6 (M6) retrieval that is run on standard MODIS data. After minimizing or characterizing remaining differences between ML on MODIS-IFF (or ML-M) and M6, we have performed apples-to-apples comparison between ML-M and ML on VIIRS IFF (ML-V). Examples of these comparisons include time series of monthly global mean, monthly and seasonal global maps at 1° resolution, and collocations as compared to AERONET. We concentrate on the overlapping period January 2012 through June 2014, and discuss some of the remaining discrepancies between the ML-V and ML-M datasets.

Exploring the Genomic Roadmap and Molecular Phylogenetics Associated with MODY Cascades Using Computational Biology.

PubMed

Chakraborty, Chiranjib; Bandyopadhyay, Sanghamitra; Doss, C George Priya; Agoramoorthy, Govindasamy

2015-04-01

Maturity onset diabetes of the young (MODY) is a metabolic and genetic disorder. It is different from type 1 and type 2 diabetes with low occurrence level (1-2%) among all diabetes. This disorder is a consequence of β-cell dysfunction. Till date, 11 subtypes of MODY have been identified, and all of them can cause gene mutations. However, very little is known about the gene mapping, molecular phylogenetics, and co-expression among MODY genes and networking between cascades. This study has used latest servers and software such as VarioWatch, ClustalW, MUSCLE, G Blocks, Phylogeny.fr, iTOL, WebLogo, STRING, and KEGG PATHWAY to perform comprehensive analyses of gene mapping, multiple sequences alignment, molecular phylogenetics, protein-protein network design, co-expression analysis of MODY genes, and pathway development. The MODY genes are located in chromosomes-2, 7, 8, 9, 11, 12, 13, 17, and 20. Highly aligned block shows Pro, Gly, Leu, Arg, and Pro residues are highly aligned in the positions of 296, 386, 437, 455, 456 and 598, respectively. Alignment scores inform us that HNF1A and HNF1B proteins have shown high sequence similarity among MODY proteins. Protein-protein network design shows that HNF1A, HNF1B, HNF4A, NEUROD1, PDX1, PAX4, INS, and GCK are strongly connected, and the co-expression analyses between MODY genes also show distinct association between HNF1A and HNF4A genes. This study has used latest tools of bioinformatics to develop a rapid method to assess the evolutionary relationship, the network development, and the associations among eleven MODY genes and cascades. The prediction of sequence conservation, molecular phylogenetics, protein-protein network and the association between the MODY cascades enhances opportunities to get more insights into the less-known MODY disease.

Circulating ghrelin level is higher in HNF1A-MODY and GCK-MODY than in polygenic forms of diabetes mellitus.

PubMed

Nowak, Natalia; Hohendorff, Jerzy; Solecka, Iwona; Szopa, Magdalena; Skupien, Jan; Kiec-Wilk, Beata; Mlynarski, Wojciech; Malecki, Maciej T

2015-12-01

Ghrelin is a hormone that regulates appetite. It is likely to be involved in the pathophysiology of varying forms of diabetes. In animal studies, the ghrelin expression was regulated by the hepatocyte nuclear factor 1 alpha (HNF1A). Mutations of the HNF1A gene cause maturity onset diabetes of the young (MODY). We aimed to assess the circulating ghrelin levels in HNF1A-MODY and in other types of diabetes and to evaluate its association with HNF1A mutation status. Our cohort included 46 diabetic HNF1A gene mutation carriers, 55 type 2 diabetes (T2DM) subjects, 42 type 1 diabetes (T1DM) patients, and 31 glucokinase (GCK) gene mutation carriers with diabetes as well as 51 healthy controls. Plasma ghrelin concentration was measured using the immunoenzymatic assay with polyclonal antibody against the C-terminal fragment of its acylated and desacylated forms. Ghrelin concentrations were 0.75 ± 0.32, 0.70 ± 0.21, 0.50 ± 0.20, and 0.40 ± 0.16 ng/ml in patients with HNF1A-MODY, GCK-MODY, T1DM, and T2DM, respectively. The ghrelin levels were higher in HNF1A-MODY and GCK-MODY than in T1DM and T2DM (p < 0.001 for all comparisons) but lower than in non-diabetic controls (1.02 ± 0.29 ng/ml, p < 0.001 for both comparisons). In the multivariate linear model, the differences between both MODY groups and common diabetes types remained significant. Analysis by a HNF1A mutation type indicated that ghrelin concentration is similar in patients with different types of sequence differences. Plasma ghrelin level is higher in HNF1A-MODY and GCK-MODY than in the common polygenic forms of diabetes.

Comparing Stream Discharge, Dissolved Organic Carbon, and Selected MODIS Indices in Freshwater Basins

NASA Astrophysics Data System (ADS)

Shaver, W. T.; Wollheim, W. M.

2009-12-01

In a preliminary study of the Ipswich Basin in Massachusetts, a good correlation was found to exist between the MODIS (Moderate Resolution Imaging Spectroradiometer) Enhanced Vegetation Index and stream dissolved organic carbon (DOC). Further study was warranted to determine the utility of MODIS indices in predicting temporal stream DOC. Stream discharge rates and DOC data were obtained from the USGS National Water Quality Assessment Program (NAWQA) database. Twelve NAWQA monitoring sites were selected for evaluation based on the criteria of having drainage basin sizes less than 600 km2 with relatively continuous, long-term DOC and discharge data. MODIS indices were selected based on their connections with terrestrial DOC and were obtained for each site's catchment area. These included the Normalized Vegetation Index (NDVI), the Enhanced Vegetation Index (EVI), the Daily Photosynthesis (PSN) and the Leaf Area Index (LAI). Regression analysis was used to evaluate the relationships between DOC, discharge and MODIS products. Data analysis revealed several important trends. Sites with strong positive correlation coefficients (r values ranging from 0.462 to 0.831) between DOC and discharge displayed weak correlations with all of the MODIS indices (r values ranging from 0 to 0.322). For sites where the DOC/discharge correlation was weak or negative, MODIS indices were moderately correlated, with r values ranging from 0.35 to 0.647, all of which were significant at less than 1 percent. Some sites that had weak positive correlations with MODIS indices displayed a lag time, that is, the MODIS index rose and fell shortly before the DOC concentration rose and fell. Shifting the MODIS data forward in time by roughly one month significantly increased the DOC/MODIS r values by about 10%. NDVI and EVI displayed the strongest correlations with temporal DOC variability (r values ranging from 0.471 to 0.647), and therefore these indices are the most promising for being incorporated into a model for remotely sensing terrestrial DOC.

MODIS On-Board Blackbody Function and Performance

NASA Technical Reports Server (NTRS)

Xiaoxiong, Xiong; Wenny, Brian N.; Wu, Aisheng; Barnes, William

2009-01-01

Two MODIS instruments are currently in orbit, making continuous global observations in visible to long-wave infrared wavelengths. Compared to heritage sensors, MODIS was built with an advanced set of on-board calibrators, providing sensor radiometric, spectral, and spatial calibration and characterization during on-orbit operation. For the thermal emissive bands (TEB) with wavelengths from 3.7 m to 14.4 m, a v-grooved blackbody (BB) is used as the primary calibration source. The BB temperature is accurately measured each scan (1.47s) using a set of 12 temperature sensors traceable to NIST temperature standards. The onboard BB is nominally operated at a fixed temperature, 290K for Terra MODIS and 285K for Aqua MODIS, to compute the TEB linear calibration coefficients. Periodically, its temperature is varied from 270K (instrument ambient) to 315K in order to evaluate and update the nonlinear calibration coefficients. This paper describes MODIS on-board BB functions with emphasis on on-orbit operation and performance. It examines the BB temperature uncertainties under different operational conditions and their impact on TEB calibration and data product quality. The temperature uniformity of the BB is also evaluated using TEB detector responses at different operating temperatures. On-orbit results demonstrate excellent short-term and long-term stability for both the Terra and Aqua MODIS on-board BB. The on-orbit BB temperature uncertainty is estimated to be 10mK for Terra MODIS at 290K and 5mK for Aqua MODIS at 285K, thus meeting the TEB design specifications. In addition, there has been no measurable BB temperature drift over the entire mission of both Terra and Aqua MODIS.

Global Space-Based Inter-Calibration System Reflective Solar Calibration Reference: From Aqua MODIS to S-NPP VIIRS

NASA Technical Reports Server (NTRS)

Xiong, Xiaoxiong; Angal, Amit; Butler, James; Cao, Changyong; Doelling, Daivd; Wu, Aisheng; Wu, Xiangqian

2016-01-01

The MODIS has successfully operated on-board the NASA's EOS Terra and Aqua spacecraft for more than 16 and 14 years, respectively. MODIS instrument was designed with stringent calibration requirements and comprehensive on-board calibration capability. In the reflective solar spectral region, Aqua MODIS has performed better than Terra MODIS and, therefore, has been chosen by the Global Space-based Inter-Calibration System (GSICS) operational community as the calibration reference sensor in cross-sensor calibration and calibration inter-comparisons. For the same reason, it has also been used by a number of earth observing sensors as their calibration reference. Considering that Aqua MODIS has already operated for nearly 14 years, it is essential to transfer its calibration to a follow-on reference sensor with a similar calibration capability and stable performance. The VIIRS is a follow-on instrument to MODIS and has many similar design features as MODIS, including their on-board calibrators (OBC). As a result, VIIRS is an ideal candidate to replace MODIS to serve as the future GSICS reference sensor. Since launch, the S-NPP VIIRS has already operated for more than 4 years and its overall performance has been extensively characterized and demonstrated to meet its overall design requirements. This paper provides an overview of Aqua MODIS and S-NPP VIIRS reflective solar bands (RSB) calibration methodologies and strategies, traceability, and their on-orbit performance. It describes and illustrates different methods and approaches that can be used to facilitate the calibration reference transfer, including the use of desert and Antarctic sites, deep convective clouds (DCC), and the lunar observations.

Response Versus Scan-Angle Corrections for MODIS Reflective Solar Bands Using Deep Convective Clouds

NASA Technical Reports Server (NTRS)

Bhatt, Rajendra; Angal, Amit; Doelling, David R.; Xiong, Xiaoxiong; Wu, Aisheng; Haney, Conor O.; Scarino, Benjamin R.; Gopalan, Arun

2016-01-01

The absolute radiometric calibration of the reflective solar bands (RSBs) of Aqua- and Terra-MODIS is performed using on-board calibrators. A solar diffuser (SD) panel along with a solar diffuser stability monitor (SDSM) system, which tracks the performance of the SD over time, provides the absolute reference for calibrating the MODIS sensors. MODIS also views the moon and deep space through its space view (SV) port for lunar-based calibration and computing the zero input radiance, respectively. The MODIS instrument views the Earths surface through a two-sided scan mirror, whose reflectance is a function of angle of incidence (AOI) and is described by response versus scan-angle (RVS). The RVS for both MODIS instruments was characterized prior to launch. MODIS also views the SD and the moon at two different assigned RVS positions. There is sufficient evidence that the RVS is changing on orbit over time and as a function of wavelength. The SD and lunar observation scans can only track the RVS variation at two RVS positions. Consequently, the MODIS Characterization Support Team (MCST) developed enhanced approaches that supplement the onboard calibrator measurements with responses from pseudo-invariant desert sites. This approach has been implemented in Level 1B (L1B) Collection 6 (C6) for selected short-wavelength bands. This paper presents an alternative approach of characterizing the mirror RVS to derive the time-dependent RVS correction factors for MODIS RSBs using tropical deep convective cloud (DCC) targets. An initial assessment of the DCC response from Aqua-MODIS band 1 C6 data indicates evidence of RVS artifacts, which are not uniform across the scans and are more prevalent in the left side Earth-view scans.

Response Versus Scan-Angle Corrections for MODIS Reflective Solar Bands Using Deep Convective Clouds

NASA Technical Reports Server (NTRS)

Bhatt, Rajendra; Angal, Amit; Doelling, David R.; Xiong, Xiaoxiong; Wu, Aisheng; Haney, Conor O.; Scarino, Benjamin R.; Gopalan, Arun

2016-01-01

The absolute radiometric calibration of the reflective solar bands (RSBs) of Aqua- and Terra-MODIS is performed using on-board calibrators. A solar diffuser (SD) panel along with a solar diffuser stability monitor (SDSM) system, which tracks the performance of the SD over time, provides the absolute reference for calibrating the MODIS sensors. MODIS also views the moon and deep space through its space view (SV) port for lunar-based calibration and computing the zero input radiance, respectively. The MODIS instrument views the Earth's surface through a two-sided scan mirror, whose reflectance is a function of angle of incidence (AOI) and is described by response versus scan-angle (RVS). The RVS for both MODIS instruments was characterized prior to launch. MODIS also views the SD and the moon at two different assigned RVS positions. There is sufficient evidence that the RVS is changing on orbit over time and as a function of wavelength. The SD and lunar observation scans can only track the RVS variation at two RVS positions. Consequently, the MODIS Characterization Support Team (MCST) developed enhanced approaches that supplement the onboard calibrator measurements with responses from pseudo-invariant desert sites. This approach has been implemented in Level 1B (L1B) Collection 6 (C6) for selected short-wavelength bands. This paper presents an alternative approach of characterizing the mirror RVS to derive the time-dependent RVS correction factors for MODIS RSBs using tropical deep convective cloud (DCC) targets. An initial assessment of the DCC response from Aqua-MODIS band 1 C6 data indicates evidence of RVS artifacts, which are not uniform across the scans and are more prevalent in the left side Earth-view scans.

A review of maturity onset diabetes of the young (MODY) and challenges in the management of glucokinase-MODY.

PubMed

Bishay, Ramy H; Greenfield, Jerry R

2016-11-21

Maturity onset diabetes of the young (MODY), the most common monogenic form of diabetes, accounts for 1-2% of all diabetes diagnoses. Glucokinase (GCK)-MODY (also referred to as MODY2) constitutes 10-60% of all MODY cases and is inherited as an autosomal dominant heterozygous mutation, resulting in loss of function of the GCK gene. Patients with GCK-MODY generally have mild, fasting hyperglycaemia that is present from birth, are commonly leaner and diagnosed at a younger age than patients with type 2 diabetes, and rarely develop complications from diabetes. Hence, treatment is usually unnecessary and may be ceased. Therefore, genetic screening is recommended in all young patients (< 40 years) with an autosomal dominant family history of diabetes and who lack features of the metabolic syndrome and type 1 diabetes. Further, treatment discontinuation should be discussed with the patient as part of the informed consent process, as the realisation that prior treatment may have not been necessary - or that it could have been less burdensome - may have psychological implications for the patient. This is true for other forms of MODY, such as hepatocyte nuclear factor 1A mutations (MODY3) where hyperglycaemia is managed with low dose sulfonylurea rather than insulin. Patients with GCK-MODY, in line with trends in the general population, are becoming older and more overweight and obese, and are concomitantly developing features of insulin resistance and glucose intolerance. Therefore, controversy exists as to whether such "treatment-exempt" patients should be reassessed for treatment later in life. As testing becomes more accessible, clinicians and patients are likely to embrace genetic screening earlier in the course of diabetes, which may avert the consequences of delayed testing years after diagnosis and treatment initiation.

Detector Noise Characterization and Performance of MODIS Thermal Emissive Bands

NASA Technical Reports Server (NTRS)

Xiong, X.; Wu, A.; Chen, N.; Chiang, K.; Xiong, S.; Wenny, B.; Barnes, W. L.

2007-01-01

MODIS has 16 thermal emissive bands, a total of 160 individual detectors (10 for each spectral bands), located on the two cold focal plane assemblies (CFPA). MODIS TEB detectors were fully characterized pre-launch in a thermal vacuum (TV) environment using a NIST traceable blackbody calibration source (BCS) with temperatures ranging from 170 to 340K. On-orbit the TEB detectors are calibrated using an on-board blackbody (BB) on a scan-by-scan basis. For nominal on-orbit operation, the on-board BB temperature is typically controlled at 285K for Aqua MODIS and 290K for Terra MODIS. For the MODIS TEB calibration, each detector's noise equivalent temperature difference (NEdT) is often used to assess its performance and this parameter is a major contributor to the calibration uncertainty. Because of its impact on sensor calibration and data product quality, each MODIS TEB detector's NEdT is monitored on a daily basis at a fixed BB temperature and completely characterized on a regular basis at a number of BB temperatures. In this paper, we describe MODIS on-orbit TEB NEdT characterization activities, approaches, and results. We compare both pre-launch and on-orbit performance with sensor design specification and examine detector noise characterization impact on the calibration uncertainty. To date, 135 TEB detectors (out of a total of 160 detectors) in Terra MODIS (launched in December 1999) and 158 in Aqua MODIS (launched in May 2002) continue to perform with their NEdT below (or better than) their design specifications. A complete summary of all TEB noisy detectors, identified both pre-launch and on-orbit, is provided.

Response versus scan-angle corrections for MODIS reflective solar bands using deep convective clouds

NASA Astrophysics Data System (ADS)

Bhatt, Rajendra; Angal, Amit; Doelling, David R.; Xiong, Xiaoxiong; Wu, Aisheng; Haney, Conor O.; Scarino, Benjamin R.; Gopalan, Arun

2016-05-01

The absolute radiometric calibration of the reflective solar bands (RSBs) of Aqua- and Terra-MODIS is performed using on-board calibrators. A solar diffuser (SD) panel along with a solar diffuser stability monitor (SDSM) system, which tracks the degradation of the SD over time, provides the baseline for calibrating the MODIS sensors. MODIS also views the moon and deep space through its space view (SV) port for lunar-based calibration and computing the background, respectively. The MODIS instrument views the Earth's surface using a two-sided scan mirror, whose reflectance is a function of the angle of incidence (AOI) and is described by response versus scan-angle (RVS). The RVS for both MODIS instruments was characterized prior to launch. MODIS also views the SD and the moon at two different AOIs. There is sufficient evidence that the RVS is changing on orbit over time and as a function of wavelength. The SD and lunar observation scans can only track the RVS variation at two AOIs. Consequently, the MODIS Characterization Support Team (MCST) developed enhanced approaches that supplement the onboard calibrator measurements with responses from the pseudo-invariant desert sites. This approach has been implemented in Level 1B (L1B) Collection 6 (C6) for select short-wavelength bands. This paper presents an alternative approach of characterizing the mirror RVS to derive the time-dependent RVS correction factors for MODIS RSBs using tropical deep convective cloud (DCC) targets. An initial assessment of the DCC response from Aqua-MODIS band 1 C6 data indicates evidence of RVS artifacts, which are not uniform across the scans and are more prevalent at the beginning of the earth-view scan.

Terra MODIS Band 27 Electronic Crosstalk Effect and Its Removal

NASA Technical Reports Server (NTRS)

Sun, Junqiang; Xiong, Xiaoxiong; Madhavan, Sriharsha; Wenny, Brian

2012-01-01

The MODerate-resolution Imaging Spectroradiometer (MODIS) is one of the primary instruments in the NASA Earth Observing System (EOS). The first MODIS instrument was launched in December, 1999 on-board the Terra spacecraft. MODIS has 36 bands, covering a wavelength range from 0.4 micron to 14.4 micron. MODIS band 27 (6.72 micron) is a water vapor band, which is designed to be insensitive to Earth surface features. In recent Earth View (EV) images of Terra band 27, surface feature contamination is clearly seen and striping has become very pronounced. In this paper, it is shown that band 27 is impacted by electronic crosstalk from bands 28-30. An algorithm using a linear approximation is developed to correct the crosstalk effect. The crosstalk coefficients are derived from Terra MODIS lunar observations. They show that the crosstalk is strongly detector dependent and the crosstalk pattern has changed dramatically since launch. The crosstalk contributions are positive to the instrument response of band 27 early in the mission but became negative and much larger in magnitude at later stages of the mission for most detectors of the band. The algorithm is applied to both Black Body (BB) calibration and MODIS L1B products. With the crosstalk effect removed, the calibration coefficients of Terra MODIS band 27 derived from the BB show that the detector differences become smaller. With the algorithm applied to MODIS L1B products, the Earth surface features are significantly removed and the striping is substantially reduced in the images of the band. The approach developed in this report for removal of the electronic crosstalk effect can be applied to other MODIS bands if similar crosstalk behaviors occur.

Evaluation and Validation of Updated MODIS C6 and VIIRS LAI/FPAR

NASA Astrophysics Data System (ADS)

Yan, K.; Park, T.; Chen, C.; Yang, B.; Yan, G.; Knyazikhin, Y.; Myneni, R. B.; CHOI, S.

2015-12-01

Leaf Area Index (LAI) and Fraction of Photosynthetically Active Radiation (0.4-0.7 μm) absorbed by vegetation (FPAR) play a key role in characterizing vegetation canopy functioning and energy absorption capacity. With radiative transfer realization, MODIS onboard NASA EOS Terra and Aqua satellites has provided globally continuous LAI/FPAR since 2000 and continuously updated the products with better quality. And NPP VIIRS shows the measurement capability to extend high-quality LAI/FPAR time series data records as a successor of MODIS. The primary objectives of this study are 1) to evaluate and validate newly updated MODIS Collection 6 (C6) LAI/FPAR product which has finer resolution (500m) and improved biome type input, and 2) to examine and adjust VIIRS LAI/FPAR algorithm for continuity with MODIS'. For MODIS C6 investigation, we basically measure the spatial coverage (i.e., main radiative transfer algorithm execution), continuity and consistency with Collection 5 (C5), and accuracy with field measured LAI/FPAR. And we also validate C6 LAI/FPAR via comparing other possible global LAI/FPAR products (e.g., GLASS and CYCLOPES) and capturing co-varying seasonal signatures with climatic variables (e.g., temperature and precipitation). For VIIRS evaluation and adjustment, we first quantify possible difference between C5 and MODIS heritage based VIIRS LAI/FPAR. Then based on the radiative transfer theory of canopy spectral invariants, we find VIIRS- and biome-specific configurable parameters (single scattering albedo and uncertainty). These two practices for MODIS C6 and VIIRS LAI/FPAR products clearly suggest that (a) MODIS C6 has better coverage and accuracy than C5, (b) C6 shows consistent spatiotemporal pattern with C5, (c) VIIRS has the potential for producing MODIS-like global LAI/FPAR Earth System Data Records.

A SOAP Web Service for accessing MODIS land product subsets

DOE Office of Scientific and Technical Information (OSTI.GOV)

SanthanaVannan, Suresh K; Cook, Robert B; Pan, Jerry Yun

2011-01-01

Remote sensing data from satellites have provided valuable information on the state of the earth for several decades. Since March 2000, the Moderate Resolution Imaging Spectroradiometer (MODIS) sensor on board NASA s Terra and Aqua satellites have been providing estimates of several land parameters useful in understanding earth system processes at global, continental, and regional scales. However, the HDF-EOS file format, specialized software needed to process the HDF-EOS files, data volume, and the high spatial and temporal resolution of MODIS data make it difficult for users wanting to extract small but valuable amounts of information from the MODIS record. Tomore » overcome this usability issue, the NASA-funded Distributed Active Archive Center (DAAC) for Biogeochemical Dynamics at Oak Ridge National Laboratory (ORNL) developed a Web service that provides subsets of MODIS land products using Simple Object Access Protocol (SOAP). The ORNL DAAC MODIS subsetting Web service is a unique way of serving satellite data that exploits a fairly established and popular Internet protocol to allow users access to massive amounts of remote sensing data. The Web service provides MODIS land product subsets up to 201 x 201 km in a non-proprietary comma delimited text file format. Users can programmatically query the Web service to extract MODIS land parameters for real time data integration into models, decision support tools or connect to workflow software. Information regarding the MODIS SOAP subsetting Web service is available on the World Wide Web (WWW) at http://daac.ornl.gov/modiswebservice.« less

Heterozygous RFX6 protein truncating variants are associated with MODY with reduced penetrance.

PubMed

Patel, Kashyap A; Kettunen, Jarno; Laakso, Markku; Stančáková, Alena; Laver, Thomas W; Colclough, Kevin; Johnson, Matthew B; Abramowicz, Marc; Groop, Leif; Miettinen, Päivi J; Shepherd, Maggie H; Flanagan, Sarah E; Ellard, Sian; Inagaki, Nobuya; Hattersley, Andrew T; Tuomi, Tiinamaija; Cnop, Miriam; Weedon, Michael N

2017-10-12

Finding new causes of monogenic diabetes helps understand glycaemic regulation in humans. To find novel genetic causes of maturity-onset diabetes of the young (MODY), we sequenced MODY cases with unknown aetiology and compared variant frequencies to large public databases. From 36 European patients, we identify two probands with novel RFX6 heterozygous nonsense variants. RFX6 protein truncating variants are enriched in the MODY discovery cohort compared to the European control population within ExAC (odds ratio = 131, P = 1 × 10 -4 ). We find similar results in non-Finnish European (n = 348, odds ratio = 43, P = 5 × 10 -5 ) and Finnish (n = 80, odds ratio = 22, P = 1 × 10 -6 ) replication cohorts. RFX6 heterozygotes have reduced penetrance of diabetes compared to common HNF1A and HNF4A-MODY mutations (27, 70 and 55% at 25 years of age, respectively). The hyperglycaemia results from beta-cell dysfunction and is associated with lower fasting and stimulated gastric inhibitory polypeptide (GIP) levels. Our study demonstrates that heterozygous RFX6 protein truncating variants are associated with MODY with reduced penetrance.Maturity-onset diabetes of the young (MODY) is the most common subtype of familial diabetes. Here, Patel et al. use targeted DNA sequencing of MODY patients and large-scale publically available data to show that RFX6 heterozygous protein truncating variants cause reduced penetrance MODY.

Characterizing Response Versus Scan-Angle for MODIS Reflective Solar Bands Using Deep Convective Clouds

NASA Technical Reports Server (NTRS)

Bhatt, Rajendra; Doelling, David R.; Angal, Amit; Xiong, Xiaoxiong; Scarino, Benjamin; Gopalan, Arun; Haney, Conor; Wu, Aisheng

2017-01-01

MODIS consists of a cross-track, two-sided scan mirror, whose reflectance is not uniform but is a function of angle of incidence (AOI). This feature, known as response versusscan-angle (RVS), was characterized for all reflective solar bands of both MODIS instruments prior to launch. The RVS characteristic has changed on orbit, which must be tracked precisely over time to ensure the quality of MODIS products. The MODIS characterization support team utilizes the onboard calibrators and the earth view responses from multiple pseudo invariant desert sites to track the RVS changes at different AOIs. The drawback of using deserts is the assumption that these sites are radiometrically stable during the monitoring period. In addition, the 16-day orbit repeat cycle of MODIS allows for only a limited set of AOIs over a given desert. We propose a novel and robust approach of characterizing the MODIS RVS using tropical deep convective clouds (DCC). The method tracks the monthly DCC response at specified sets of AOIs to compute the temporal RVS changes. Initial results have shown that the Aqua-MODIS collection 6 band 1 level 1B radiances show considerable residual RVS dependencies, with long-term drifts up to 2.3 at certain AOIs.

Characterizing response versus scan-angle for MODIS reflective solar bands using deep convective clouds

NASA Astrophysics Data System (ADS)

Bhatt, Rajendra; Doelling, David R.; Angal, Amit; Xiong, Xiaoxiong; Scarino, Benjamin; Gopalan, Arun; Haney, Conor; Wu, Aisheng

2017-01-01

MODIS consists of a cross-track, two-sided scan mirror, whose reflectance is not uniform but is a function of angle of incidence (AOI). This feature, known as response versus scan-angle (RVS), was characterized for all reflective solar bands of both MODIS instruments prior to launch. The RVS characteristic has changed on orbit, which must be tracked precisely over time to ensure the quality of MODIS products. The MODIS characterization support team utilizes the onboard calibrators and the earth view responses from multiple pseudoinvariant desert sites to track the RVS changes at different AOIs. The drawback of using deserts is the assumption that these sites are radiometrically stable during the monitoring period. In addition, the 16-day orbit repeat cycle of MODIS allows for only a limited set of AOIs over a given desert. We propose a novel and robust approach of characterizing the MODIS RVS using tropical deep convective clouds (DCC). The method tracks the monthly DCC response at specified sets of AOIs to compute the temporal RVS changes. Initial results have shown that the Aqua-MODIS collection 6 band 1 level 1B radiances show considerable residual RVS dependencies, with long-term drifts up to 2.3% at certain AOIs.

Inter-Comparison of S-NPP VIIRS and Aqua MODIS Thermal Emissive Bands Using Hyperspectral Infrared Sounder Measurements as a Transfer Reference

NASA Technical Reports Server (NTRS)

Li, Yonghong; Wu, Aisheng; Xiong, Xiaoxiong

2016-01-01

This paper compares the calibration consistency of the spectrally-matched thermal emissive bands (TEB) between the Suomi National Polar-orbiting Partnership (S-NPP) Visible Infrared Imaging Radiometer Suite (VIIRS) and the Aqua Moderate Resolution Imaging Spectroradiometer (MODIS), using observations from their simultaneous nadir overpasses (SNO). Nearly-simultaneous hyperspectral measurements from the Aqua Atmospheric Infrared Sounder(AIRS) and the S-NPP Cross-track Infrared Sounder (CrIS) are used to account for existing spectral response differences between MODIS and VIIRS TEB. The comparison uses VIIRS Sensor Data Records (SDR) in MODIS five-minute granule format provided by the NASA Land Product and Evaluation and Test Element (PEATE) and Aqua MODIS Collection 6 Level 1 B (L1B) products. Each AIRS footprint of 13.5 km (or CrIS field of view of 14 km) is co-located with multiple MODIS (or VIIRS) pixels. The corresponding AIRS- and CrIS-simulated MODIS and VIIRS radiances are derived by convolutions based on sensor-dependent relative spectral response (RSR) functions. The VIIRS and MODIS TEB calibration consistency is evaluated and the two sensors agreed within 0.2 K in brightness temperature.Additional factors affecting the comparison such as geolocation and atmospheric water vapor content are also discussed in this paper.

First Moderate Resolution Imaging Spectroradiometer (MODIS) Snow and Ice Workshop

NASA Technical Reports Server (NTRS)

Hall, Dorothy K. (Editor)

1995-01-01

This document is a compilation of summaries of talks presented at a 2-day workshop on Moderate Resolution maging Spectroradiometer (MODIS) snow and ice products. The objectives of the workshop were to: inform the snow and ce community of potential MODIS products, seek advice from the participants regarding the utility of the products, and letermine the needs for future post-launch MODIS snow and ice products. Four working groups were formed to discuss at-launch snow products, at-launch ice products, post-launch snow and ice products and utility of MODIS snow and ice products, respectively. Each working group presented recommendations at the conclusion of the workshop.

Estimating top-of-atmosphere thermal infrared radiance using MERRA-2 atmospheric data

NASA Astrophysics Data System (ADS)

Kleynhans, Tania; Montanaro, Matthew; Gerace, Aaron; Kanan, Christopher

2017-05-01

Thermal infrared satellite images have been widely used in environmental studies. However, satellites have limited temporal resolution, e.g., 16 day Landsat or 1 to 2 day Terra MODIS. This paper investigates the use of the Modern-Era Retrospective analysis for Research and Applications, Version 2 (MERRA-2) reanalysis data product, produced by NASA's Global Modeling and Assimilation Office (GMAO) to predict global topof-atmosphere (TOA) thermal infrared radiance. The high temporal resolution of the MERRA-2 data product presents opportunities for novel research and applications. Various methods were applied to estimate TOA radiance from MERRA-2 variables namely (1) a parameterized physics based method, (2) Linear regression models and (3) non-linear Support Vector Regression. Model prediction accuracy was evaluated using temporally and spatially coincident Moderate Resolution Imaging Spectroradiometer (MODIS) thermal infrared data as reference data. This research found that Support Vector Regression with a radial basis function kernel produced the lowest error rates. Sources of errors are discussed and defined. Further research is currently being conducted to train deep learning models to predict TOA thermal radiance

Atmospheric Correction of High-Spatial-Resolution Commercial Satellite Imagery Products Using MODIS Atmospheric Products

NASA Technical Reports Server (NTRS)

Pagnutti, Mary; Holekamp, Kara; Ryan, Robert E.; Vaughan, Ronand; Russell, Jeff; Prados, Don; Stanley, Thomas

2005-01-01

Remotely sensed ground reflectance is the foundation of any interoperability or change detection technique. Satellite intercomparisons and accurate vegetation indices, such as the Normalized Difference Vegetation Index (NDVI), require the generation of accurate reflectance maps (NDVI is used to describe or infer a wide variety of biophysical parameters and is defined in terms of near-infrared (NIR) and red band reflectances). Accurate reflectance-map generation from satellite imagery relies on the removal of solar and satellite geometry and of atmospheric effects and is generally referred to as atmospheric correction. Atmospheric correction of remotely sensed imagery to ground reflectance has been widely applied to a few systems only. The ability to obtain atmospherically corrected imagery and products from various satellites is essential to enable widescale use of remotely sensed, multitemporal imagery for a variety of applications. An atmospheric correction approach derived from the Moderate Resolution Imaging Spectroradiometer (MODIS) that can be applied to high-spatial-resolution satellite imagery under many conditions was evaluated to demonstrate a reliable, effective reflectance map generation method. Additional information is included in the original extended abstract.

Thermal anomaly mapping from night MODIS imagery of USA, a tool for environmental assessment.

PubMed

Miliaresis, George Ch

2013-02-01

A method is presented for elevation, latitude and longitude decorrelation stretch of multi-temporal MODIS MYD11C3 imagery (monthly average night land surface temperature (LST) across USA and Mexico). Multiple linear regression analysis of principal components images (PCAs) quantifies the variance explained by elevation (H), latitude (LAT), and longitude (LON). The multi-temporal LST imagery is reconstructed from the residual images and selected PCAs by taking into account the portion of variance that is not related to H, LAT, LON. The reconstructed imagery presents the magnitude the standardized LST value per pixel deviates from the H, LAT, LON predicted. LST anomaly is defined as a region that presents either positive or negative reconstructed LST value. The environmental assessment of USA indicated that only for the 25 % of the study area (Mississippi drainage basin), the LST is predicted by the H, LAT, LON. Regions with milled climatic pattern were identified in the West Coast while the coldest climatic pattern is observed for Mid USA. Positive season invariant LST anomalies are identified in SW (Arizona, Sierra Nevada, etc.) and NE USA.

Analysis of Summer 2002 Melt Extent on the Greenland Ice Sheet using MODIS and SSM/I Data

NASA Technical Reports Server (NTRS)

Hall, Dorothy K.; Williams, Richard S., Jr.; Steffen, Konrad; Chien, Y. L.; Foster, James L.; Robinson, David A.; Riggs, George A.

2004-01-01

Previous work has shown that the summer of 2002 had the greatest area of snow melt extent on the Greenland ice sheet ever recorded using passive-microwave data. In this paper, we compare the 0 degree isotherm derived from the Moderate-Resolution Imaging Spectroradiometer (MODIS) instrument, with Special Sensor Microwave/Imager (SSM/I)-derived melt, at the time of the maximum melt extent in 2002. To validate the MODIS-derived land-surface temperatures (LSTs), we compared the MODIS LSTs with air temperatures from nine stations (using 11 different data points) and found that they agreed to within 2.3 plus or minus 2.09 C, with station temperatures consistently lower than the MODIS LSTs. According to the MODIS LST, the maximum surface melt extended to approximately 2300 m in southern Greenland; while the SSM/I measurements showed that the maximum melt extended to nearly 2700 m in southeastern Greenland. The MODIS and SSM/I data are complementary in providing detailed information about the progression of surface and near-surface melt on the Greenland ice sheet.

Achieving sub-pixel geolocation accuracy in support of MODIS land science

USGS Publications Warehouse

Wolfe, R.E.; Nishihama, M.; Fleig, A.J.; Kuyper, J.A.; Roy, David P.; Storey, James C.; Patt, F.S.

2002-01-01

The Moderate Resolution Imaging Spectroradiometer (MODIS) was launched in December 1999 on the polar orbiting Terra spacecraft and since February 2000 has been acquiring daily global data in 36 spectral bands—29 with 1 km, five with 500 m, and two with 250 m nadir pixel dimensions. The Terra satellite has on-board exterior orientation (position and attitude) measurement systems designed to enable geolocation of MODIS data to approximately 150 m (1σ) at nadir. A global network of ground control points is being used to determine biases and trends in the sensor orientation. Biases have been removed by updating models of the spacecraft and instrument orientation in the MODIS geolocation software several times since launch and have improved the MODIS geolocation to approximately 50 m (1σ) at nadir. This paper overviews the geolocation approach, summarizes the first year of geolocation analysis, and overviews future work. The approach allows an operational characterization of the MODIS geolocation errors and enables individual MODIS observations to be geolocated to the sub-pixel accuracies required for terrestrial global change applications.

Analysis of Summer 2002 Melt Extent on the Greenland Ice Sheet using MODIS and SSM/I Data

NASA Technical Reports Server (NTRS)

Hall, Dorothy K.; Williams, Richard S.; Steffen, Konrad; Chien, Janet Y. L.

2004-01-01

Previous work has shown that the summer of 2002 had the greatest area of snow melt extent on the Greenland ice sheet ever recorded using passive-microwave data. In this paper, we compare the 0 deg. isotherm derived from the Moderate-Resolution Imaging Spectroradiometer (MODIS) instrument, with Special Sensor Microwave/Imager (SSM/I)-derived melt, at the time of the maximum melt extent in 2002. To validate the MODIS derived land-surface temperatures (LSTs), we compared the MODIS LSTs with air temperatures from nine stations (using 11 different data points) and found that they agreed to within 2.3 +/- 2.09 C, with station temperatures consistently lower than the MODIS LSTs. According to the MODIS LST, the maximum surface melt extended to approx. 2300 m in southern Greenland; while the SSM/I measurements showed that the maximum melt extended to nearly 2700 m in southeastern Greenland. The MODIS and SSM/I data are complementary in providing detailed information about the progression of surface and near- surface melt on the Greenland ice sheet.

Analysis of summer 2002 melt extent on the Greenland ice sheet using MODIS and SSM/I data

USGS Publications Warehouse

Hall, D.K.; Williams, R.S.; Steffen, K.; Chien, Janet Y.L.

2004-01-01

Previous work has shown that the summer of 2002 had the greatest area of snow melt extent on the Greenland ice sheet ever recorded using passive-microwave data. In this paper, we compare the 0?? isotherm derived from the Moderate-Resolution Imaging Spectroradiometer (MODIS) instrument, with Special Sensor Microwave/Imager (SSM/I)-derived melt, at the time of the maximum melt extent in 2002. To validate the MODIS-derived land-surface temperatures (LSTs), we compared the MODIS LSTs with air temperatures from nine stations (using 11 different data points) and found that they agreed to within 2.3??2.09??C, with station temperatures consistently lower than the MODIS LSTs. According to the MODIS LST, the maximum surface melt extended to ???2300 m in southern Greenland; while the SSM/I measurements showed that the maximum melt extended to nearly 2700 m in southeastern Greenland. The MODIS and SSM/I data are complementary in providing detailed information about the progression of surface and near-surface melt on the Greenland ice sheet.

Analysis of summer 2002 melt extent on the Greenland ice sheet using MODIS and SSM/I data

USGS Publications Warehouse

Hall, D. K.; Williams, R.S.; Steffen, K.; Chien, Janet Y.L.

2004-01-01

Previous work has shown that the summer of 2002 had the greatest area of snow melt extent on the Greenland ice sheet ever recorded using passive-microwave data. In this paper, we compare the 0deg isotherm derived from the Moderate-Resolution Imaging Spectroradiometer (MODIS) instrument, with Special Sensor Microwave/Imager (SSM/I)-derived melt, at the time of the maximum melt extent in 2002. To validate the MODIS-derived land-surface temperatures (LSTs), we compared the MODIS LSTs with air temperatures from nine stations (using 11 different data points) and found that they agreed to within 2.3 plusmn 2.09 degC, with station temperatures consistently lower than the MODIS LSTs. According to the MODIS LST, the maximum surface melt extended to ~2300 m in southern Greenland; while the SSM/I measurements showed that the maximum melt extended to nearly 2700 m in southeastern Greenland. The MODIS and SSM/I data are complementary in providing detailed information about the progression of surface and near-surface melt on the Greenland ice sheet.

Validation of MODIS Dust Aerosol Retrieval and Development Ambient Dust Phase Function using PRIDE Data

NASA Technical Reports Server (NTRS)

Remer, Lorraine A.; Lau, William (Technical Monitor)

2002-01-01

The PRIDE data set of MODIS aerosol retrievals co-located with sunphotometer measurements provides the basis of MODIS validation in a dust environment. The sunphotometer measurements include AERONET automatic instruments, land-based Microtops instruments, ship-board Microtops instruments and the AATS-6 aboard the Navajo aircraft. Analysis of these data indicate that the MODIS retrieval is within pre-launch estimates of uncertainty within the spectral range of 600-900 nm. However, the MODIS algorithm consistently retrieves smaller particles than reality thus leading to incorrect spectral response outside of the 600-900 nm range and improper size information. Further analysis of MODIS retrievals in other dust environments shows the inconsistencies are due to nonspherical effects in the phase function. These data are used to develop an ambient phase function for dust aerosol to be used for remote sensing purposes.

Calibration Adjustments to the MODIS Aqua Ocean Color Bands

NASA Technical Reports Server (NTRS)

Meister, Gerhard

2012-01-01

After the end of the SeaWiFS mission in 2010 and the MERIS mission in 2012, the ocean color products of the MODIS on Aqua are the only remaining source to continue the ocean color climate data record until the VIIRS ocean color products become operational (expected for summer 2013). The MODIS on Aqua is well beyond its expected lifetime, and the calibration accuracy of the short wavelengths (412nm and 443nm) has deteriorated in recent years_ Initially, SeaWiFS data were used to improve the MODIS Aqua calibration, but this solution was not applicable after the end of the SeaWiFS mission_ In 2012, a new calibration methodology was applied by the MODIS calibration and support team using desert sites to improve the degradation trending_ This presentation presents further improvements to this new approach. The 2012 reprocessing of the MODIS Aqua ocean color products is based on the new methodology.

Production and Distribution of Global Products From MODIS

NASA Technical Reports Server (NTRS)

Masuoka, Edward; Smith, David E. (Technical Monitor)

2000-01-01

The Moderate Resolution Imaging Spectroradiometer was launched on the EOS Terra spacecraft in December 1999 and will also fly on EOS Aqua in December 2000. With 36 spectral bands from the visible through thermal infrared and spatial resolution of 250m to 1 kilometer, each MODIS instrument will image the entire Earth surface in 2 days. This paper traces the flow of MODIS data products from the receipt of Level 0 data at the EDOS facility, through the production and quality assurance process to the Distributed Active Archive Centers (DAACs), which ship products to the user community. It describes where to obtain products and plans for reprocessing MODIS products. As most components of the ground system are severely limited in their capacity to distribute MODIS products, it also describes the key characteristics of MODIS products and their metadata that allow a user to optimize their selection of products given anticipate bottlenecks in distribution.

Trends in MODIS Geolocation Error Analysis

NASA Technical Reports Server (NTRS)

Wolfe, R. E.; Nishihama, Masahiro

2009-01-01

Data from the two MODIS instruments have been accurately geolocated (Earth located) to enable retrieval of global geophysical parameters. The authors describe the approach used to geolocate with sub-pixel accuracy over nine years of data from M0DIS on NASA's E0S Terra spacecraft and seven years of data from MODIS on the Aqua spacecraft. The approach uses a geometric model of the MODIS instruments, accurate navigation (orbit and attitude) data and an accurate Earth terrain model to compute the location of each MODIS pixel. The error analysis approach automatically matches MODIS imagery with a global set of over 1,000 ground control points from the finer-resolution Landsat satellite to measure static biases and trends in the MO0lS geometric model parameters. Both within orbit and yearly thermally induced cyclic variations in the pointing have been found as well as a general long-term trend.

Using VIIRS/NPP and MODIS/Aqua data to provide a continuous record of suspended particulate matter in a highly turbid inland lake

NASA Astrophysics Data System (ADS)

Cao, Zhigang; Duan, Hongtao; Shen, Ming; Ma, Ronghua; Xue, Kun; Liu, Dong; Xiao, Qitao

2018-02-01

Inland lakes are generally an important source of drinking water, and information on their water quality needs to be obtained in real time. To date, Moderate-resolution imaging spectroradiometer (MODIS) data have played a critical, effective and long-term role in fulfilling this function. However, the MODIS instruments on board both the Terra and Aqua satellites have operated beyond their designed five-year mission lifespans (Terra was launched in 1999, whereas Aqua was launched in 2002), and these instruments may stop running at any time in the near future. The Visible Infrared Imager Radiometer Suite (VIIRS) on board the Suomi National Polar-Orbiting Partnership (Suomi NPP, which was launched in Oct 2011) is expected to provide a consistent, long-term data record and continue the series of observations initiated by MODIS. To date, few evaluations of the consistency between VIIRS and MODIS have been conducted for turbid inland waters. In this study, we first used synchronous MODIS/Aqua and VIIRS/NPP data (±1 h) collected during 2012-2015 to evaluate the consistency of Rayleigh-corrected reflectance (Rrc) observations over Lake Hongze (the fourth-largest freshwater lake in China), since accurate remote sensing reflectance (Rrs) values cannot be acquired over turbid inland waters. Second, we used recently developed algorithms based on Rrc in the red band to estimate the concentrations of suspended particulate matter (SPM) from MODIS/Aqua and VIIRS/NPP data. Finally, we assessed the consistency of the SPM products derived from MODIS/Aqua and VIIRS/NPP. The results show the following. (1) The differences in Rrc among the green (VIIRS 551 nm and MODIS 555 nm) and red bands (VIIRS 671 nm and MODIS 645 nm) indicate a satisfactory consistency, and the unbiased percentage difference (UPD) is <12%. Meanwhile, the results for the near infrared (NIR) band (MODIS 859 nm and VIIRS 862 nm) indicate relatively large differences (UPD = 21.84%). (2) The satellite-derived SPM products obtained using MODIS/Aqua and VIIRS/NPP have a satisfactory degree of consistency (0-150 mg/L SPM: R2 = 0.81, UPD < 16% and 0-80 mg/L SPM: R2 = 0.85, UPD < 12%, respectively). These results demonstrate that VIIRS/NPP can continue to record the SPM observations initiated by MODIS/Aqua for turbid inland waters and establish environmental datasets over long time periods to support water quality management endeavors.

BRDF Characterization and Calibration Inter-Comparison between Terra MODIS, Aqua MODIS, and S-NPP VIIRS

NASA Technical Reports Server (NTRS)

Chang, Tiejun; Xiong, Xiaoxiong (Jack); Angal, Amit; Wu, Aisheng

2016-01-01

The inter-comparison of reflective solar bands (RSB) between Terra MODIS, Aqua MODIS, and SNPP VIIRS is very important for assessment of each instrument's calibration and to identify calibration improvements. One of the limitations of using their ground observations for the assessment is a lack of the simultaneous nadir overpasses (SNOs) over selected pseudo-invariant targets. In addition, their measurements over a selected Earth view target have significant difference in solar and view angles, and these differences magnify the effects of Bidirectional Reflectance Distribution Function (BRDF). In this work, an inter-comparison technique using a semi-empirical BRDF model is developed for reflectance correction. BRDF characterization requires a broad coverage of solar and view angles in the measurements over selected pseudo-invariant targets. Reflectance measurements over Libya 1, 2, and 4 desert sites from both the Aqua and Terra MODIS are regressed to a BRDF model with an adjustable coefficient accounting for the calibration difference between the two instruments. The BRDF coefficients for three desert sites for MODIS bands 1 to 9 are derived and the wavelength dependencies are presented. The analysis and inter-comparison are for MODIS bands 1 to 9 and VIIRS moderate resolution radiometric bands (M bands) M1, M2, M4, M5, M7, M8, M10 and imaging bands (I bands) I1-I3. Results show that the ratios from different sites are in good agreement. The ratios between Terra and Aqua MODIS from year 2003 to 2014 are presented. The inter-comparison between MODIS and VIIRS are analyzed for year 2014.

Comparison between MODIS-derived day and night cloud cover and surface observations over the North China Plain

NASA Astrophysics Data System (ADS)

Zhang, Xiao; Tan, Saichun; Shi, Guangyu

2018-02-01

Satellite and human visual observation are two of the most important observation approaches for cloud cover. In this study, the total cloud cover (TCC) observed by MODIS onboard the Terra and Aqua satellites was compared with Synop meteorological station observations over the North China Plain and its surrounding regions for 11 years during daytime and 7 years during nighttime. The Synop data were recorded eight times a day at 3-h intervals. Linear interpolation was used to interpolate the Synop data to the MODIS overpass time in order to reduce the temporal deviation between the satellite and Synop observations. Results showed that MODIS-derived TCC had good consistency with the Synop observations; the correlation coefficients ranged from 0.56 in winter to 0.73 in summer for Terra MODIS, and from 0.55 in winter to 0.71 in summer for Aqua MODIS. However, they also had certain differences. On average, the MODIS-derived TCC was 15.16% higher than the Synop data, and this value was higher at nighttime (15.58%-16.64%) than daytime (12.74%-14.14%). The deviation between the MODIS and Synop TCC had large seasonal variation, being largest in winter (29.53%-31.07%) and smallest in summer (4.46%-6.07%). Analysis indicated that cloud with low cloud-top height and small cloud optical thickness was more likely to cause observation bias. Besides, an increase in the satellite view zenith angle, aerosol optical depth, or snow cover could lead to positively biased MODIS results, and this affect differed among different cloud types.

MODIS Retrieval of Dust Aerosol

NASA Technical Reports Server (NTRS)

Remer, Lorraine A.; Kaufman, Yoram J.; Tanre, Didier

2003-01-01

The MODerate resolution Imaging Spectroradiometer (MODIS) currently aboard both the Terra and Aqua satellites produces a suite of products designed to characterize global aerosol distribution, optical thickness and particle size. Never before has a space-borne instrument been able to provide such detailed information, operationally, on a nearly global basis every day. The three years of Terra-MODIS data have been validated by comparing with co-located AERONET observations of aerosol optical thickness and derivations of aerosol size parameters. Some 8000 comparison points located at 133 AERONET sites around the globe show that the MODIS aerosol optical thickness retrievals are accurate to within the pre-launch expectations. However, the validation in regions dominated by desert dust is less accurate than in regions dominated by fine mode aerosol or background marine sea salt. The discrepancy is most apparent in retrievals of aerosol size parameters over ocean. In dust situations, the MODIS algorithm tends to under predict particle size because the reflectances at top of atmosphere measured by MODIS exhibit the stronger spectral signature expected by smaller particles. This pattern is consistent with the angular and spectral signature of non-spherical particles. All possible aerosol models in the MODIS Look-Up Tables were constructed from Mie theory, assuming a spherical shape. Using a combination of MODIS and AERONET observations, in regimes dominated by desert dust, we construct phase functions, empirically, with no assumption of particle shape. These new phase functions are introduced into the MODIS algorithm, in lieu of the original options for large dust-like particles. The results will be analyzed and examined.

The Observed Behavior of the Bias in MODIS-retrieved Cloud Droplet Effective Radius through MISR-MODIS Data Fusion

NASA Astrophysics Data System (ADS)

Fu, D.; Di Girolamo, L.; Liang, L.; Zhao, G.

2017-12-01

Listed as one of the Essential Climate Variables by the Global Climate Observing System, the effective radius (Re) of the cloud drop size distribution plays an important role in the energy and water cycles of the Earth system. Re is retrieved from several passive sensors, such as the Moderate Resolution Imaging Spectroradiometer (MODIS), based on a visible and near-infrared bi-spectral technique that had its foundation more than a quarter century ago. This technique makes a wide range of assumptions, including 1-D radiative transfer, assumed single-mode drop size distribution, and cloud horizontal and vertical homogeneity. It is well known that deviations from these assumptions lead to bias in the retrieved Re. Recently, an effort to characterize the bias in MODIS-retrieved Re through MISR-MODIS data fusion revealed biases in the zonal-mean values of MODIS-retrieved Re that varied from 2 to 11 µm, depending on latitude (Liang et al., 2015). Here, in a push towards bias-correction of MODIS-retrieved Re, we further examine the bias with MISR-MODIS data fusion as it relates to other observed cloud properties, such as cloud-top height and the spatial variability of the radiance field, sun-view geometry, and the driving meteorology had from reanalysis data. Our results show interesting relationships in Re bias behavior with these observed properties, revealing that while Re bias do show a certain degree of dependence on some properties, no single property dominates the behavior in MODIS-retrieved Re bias.

Evaluation of VIIRS and MODIS Thermal Emissive Band Calibration Stability Using Ground Target

NASA Technical Reports Server (NTRS)

Madhavan, Sriharsha; Brinkmann, Jake; Wenny, Brian N.; Wu, Aisheng; Xiong, Xiaoxiong

2017-01-01

The S-NPP Visible Infrared Imaging Radiometer Suite (VIIRS) instrument, a polar orbiting Earth remote sensing instrument built using a strong MODIS background, employs a similarly designed on-board calibrating source - a V-grooved blackbody for the thermal emissive bands (TEB). The central wavelengths of most VIIRS TEBs are very close to those of MODIS with the exception of the 10.7 micron channel. To ensure the long term continuity of climate data records derived using VIIRS and MODIS TEB, it is necessary to assess any systematic differences between the two instruments, including scenes with temperatures significantly lower than blackbody operating temperatures at approximately 290 K. Previous work performed by the MODIS Characterization Support Team (MCST) at NASAGSFC used the frequent observations of the Dome Concordia site located in Antarctica to evaluate the calibration stability and consistency of Terra and Aqua MODIS over the mission lifetime. The near-surface temperature measurements from an automatic weather station (AWS) provide a direct reference useful for tracking the stability and determining the relative bias between the two MODIS instruments. In this study, the same technique is applied to the VIIRS TEB and the results are compared with those from the matched MODIS TEB. The results of this study show a small negative bias when comparing the matching VIIRS and Aqua MODIS TEB, implying a higher scene temperature retrieval for S-VIIRS at the cold end. Statistically no significant drift is observed for VIIRS TEB performance over the first 3.5 years of the mission.

Automated mapping of burned areas in semi-arid ecosystems using modis time-series imagery

NASA Astrophysics Data System (ADS)

Hardtke, L. A.; Blanco, P. D.; del Valle, H. F.; Metternicht, G. I.; Sione, W. F.

2015-04-01

Understanding spatial and temporal patterns of burned areas at regional scales, provides a long-term perspective of fire processes and its effects on ecosystems and vegetation recovery patterns, and it is a key factor to design prevention and post-fire restoration plans and strategies. Standard satellite burned area and active fire products derived from the 500-m MODIS and SPOT are avail - able to this end. However, prior research caution on the use of these global-scale products for regional and sub-regional applica - tions. Consequently, we propose a novel algorithm for automated identification and mapping of burned areas at regional scale in semi-arid shrublands. The algorithm uses a set of the Normalized Burned Ratio Index products derived from MODIS time series; using a two-phased cycle, it firstly detects potentially burned pixels while keeping a low commission error (false detection of burned areas), and subsequently labels them as seed patches. Region growing image segmentation algorithms are applied to the seed patches in the second-phase, to define the perimeter of fire affected areas while decreasing omission errors (missing real burned areas). Independently-derived Landsat ETM+ burned-area reference data was used for validation purposes. The correlation between the size of burnt areas detected by the global fire products and independently-derived Landsat reference data ranged from R2 = 0.01 - 0.28, while our algorithm performed showed a stronger correlation coefficient (R2 = 0.96). Our findings confirm prior research calling for caution when using the global fire products locally or regionally.

Cross comparison of the Collection 6 and Collection 6.1 Terra and Aqua MODIS Bands 1 and 2 using AVHRR N15 and N19

NASA Astrophysics Data System (ADS)

Chen, Xuexia; Wu, Aisheng; Xiong, Xiaoxiong J.; Chen, Na

2017-09-01

The Moderate Resolution Imaging Spectroradiometer (MODIS) is a key scientific instrument that was launched into Earth orbit by NASA in 1999 on board the Terra (EOS AM) satellite and in 2002 on board the Aqua (EOS PM) satellite. Terra and Aqua MODIS collect the entire Earth's images every 1 to 2 days in 36 spectral bands. MODIS band 1 (0.620- 0.670 μm) and band 2 (0.841-0.876 μm) have nadir spatial resolution of 250 m and their measurements are crucial to derive key land surface products. This study evaluates the performance of the Collection 6 (C6, and C6.1) L1B of both Terra and Aqua MODIS bands 1 and 2 using Simultaneous Nadir Overpass (SNO) data to compare with AVHRR/3 sensors. We examine the relative stability between Terra and Aqua MODIS in reference to NOAA N15 and N19 the Advanced Very High Resolution Radiometer (AVHRR/3). The comparisons for MODIS to AVHRR/3 are over a fifteenyear period from 2002 to 2017. Results from this study provide a quantitative assessment of Terra and Aqua MODIS band 1 and band 2 calibration stability and the relative differences through the NOAA N15 and N19 AVHRR/3 sensors.

Comparison of Land Skin Temperature from a Land Model, Remote Sensing, and In-situ Measurement

NASA Technical Reports Server (NTRS)

Wang, Aihui; Barlage, Michael; Zeng, Xubin; Draper, Clara Sophie

2014-01-01

Land skin temperature (Ts) is an important parameter in the energy exchange between the land surface and atmosphere. Here hourly Ts from the Community Land Model Version 4.0, MODIS satellite observations, and in-situ observations in 2003 were compared. Compared with the in-situ observations over four semi-arid stations, both MODIS and modeled Ts show negative biases, but MODIS shows an overall better performance. Global distribution of differences between MODIS and modeled Ts shows diurnal, seasonal, and spatial variations. Over sparsely vegetated areas, the model Ts is generally lower than the MODIS observed Ts during the daytime, while the situation is opposite at nighttime. The revision of roughness length for heat and the constraint of minimum friction velocity from Zeng et al. [2012] bring the modeled Ts closer to MODIS during the day, and have little effect on Ts at night. Five factors contributing to the Ts differences between the model and MODIS are identified, including the difficulty in properly accounting for cloud cover information at the appropriate temporal and spatial resolutions, and uncertainties in surface energy balance computation, atmospheric forcing data, surface emissivity, and MODIS Ts data. These findings have implications for the cross-evaluation of modeled and remotely sensed Ts, as well as the data assimilation of Ts observations into Earth system models.

Sea Ice Surface Temperature Product from the Moderate Resolution Imaging Spectroradiometer (MODIS)

NASA Technical Reports Server (NTRS)

Hall, Dorothy K.; Key, Jeffrey R.; Casey, Kimberly A.; Riggs, George A.; Cavalieri, Donald J.

2003-01-01

Global sea ice products are produced from the Earth Observing System (EOS) Moderate Resolution Imaging Spectroradiometer (MODIS) on board both the Terra and Aqua satellites. Daily sea ice extent and ice-surface temperature (IST) products are available at 1- and 4-km resolution. Validation activities have been undertaken to assess the accuracy of the MODIS IST product at the South Pole station in Antarctica and in the Arctic Ocean using near-surface air-temperature data from a meteorological station and drifting buoys. Results from the study areas show that under clear skies, the MODIS ISTs are very close to those of the near-surface air temperatures with a bias of -1.1 and -1.2 K, and an uncertainty of 1.6 and 1.7 K, respectively. It is shown that the uncertainties would be reduced if the actual temperature of the ice surface were reported instead of the near-surface air temperature. It is not possible to get an accurate IST from MODIS in the presence of even very thin clouds or fog, however using both the Advanced Microwave Scanning Radiometer-EOS (AMSR-E) and the MODIS on the Aqua satellite, it may be possible to develop a relationship between MODIS-derived IST and ice temperature derived from the AMSR-E. Since the AMSR-E measurements are generally unaffected by cloud cover, they may be used to complement the MODIS IST measurements.

Results and Lessons from a Decade of Terra MODIS On-Orbit Spectral Characterization

NASA Technical Reports Server (NTRS)

Xiong, X.; Choi, T.; Che, N.; Wang, Z.; Dodd, J.

2010-01-01

Since its launch in December 1999, the NASA EOS Terra MODIS has successfully operated for more than a decade. MODIS makes observations in 36 spectral bands from visible (VIS) to longwave infrared (LWIR) and at three nadir spatial resolutions: 250m (2 bands), 500m (5 bands), and 1km (29 bands). In addition to its on-board calibrators designed for the radiometric calibration, MODIS was built with a unique device, called the spectro-radiometric calibration assembly (SRCA). It can be configured in three different modes: radiometric, spatial, and spectral. When it is operated in the spectral modes, the SRCA can monitor changes in Sensor spectral performance for the VIS and near-infrared (NIR) spectral bands. For more than 10 years, the SRCA operation has continued to provide valuable information for MODIS on-orbit spectral performance. This paper briefly describes SRCA on-orbit operation and calibration activities; it presents decade-long spectral characterization results for Terra MODIS VIS and NIR spectral bands in terms of chances in their center wavelengths (CW) and bandwidths (BW). It is shown that the SRCA on-orbit wavelength calibration capability remains satisfactory. For most spectral bands, the changes in CW and BW are less than 0.5 and 1 nm, respectively. Results and lessons from Terra MODIS on-orbit spectral characterization have and will continue to benefit its successor, Aqua MODIS, and other future missions.

An Assessment of SeaWiFS and MODIS Ocean Coverage

NASA Technical Reports Server (NTRS)

Woodward, Robert H.; Gregg, Watson W.

1998-01-01

Ocean coverages of SeaWiFS and MODIS were assessed for three seasons by considering monthly mean values of surface winds speeds and cloud cover. Mean and maximum coverages combined SeaWiFS and MODIS by considering combined coverages for ten-degree increments of the MODIS orbital mean anomaly. From this analysis the mean and maximum combined coverages for SeaWiFS and MODIS were determined for one and four-day periods for spring, summer, and winter seasons. Loss of coverage due to Sun glint and cloud cover were identified for both the individual and combined cases. Our analyses indicate that MODIS will enhance ocean coverage for all three seasons examined. ne combined SeaWiFS/MODIS show an increase of coverage of 42.2% to 48.7% over SeaWiFS alone for the three seasons studied; the increase in maximum one day coverage ranges from 47.5% to 52.0%. The increase in four-day coverage for the combined case ranged from 31.0% to 35.8% for mean coverage and 33.1 % to 39.2% for maximum coverage. We computed meridional distributions of coverages by binning the data into five-degree latitude bands. Our analysis shows a strong seasonal dependence of coverage. In general the meridional analysis indicates that increase in coverages for SeaWiFS/MODIS over SeaWiFS alone are greatest near the solar declination.

Validation and Temporal Analysis of Lai and Fapar Products Derived from Medium Resolution Sensor

NASA Astrophysics Data System (ADS)

Claverie, M.; Vermote, E. F.; Baret, F.; Weiss, M.; Hagolle, O.; Demarez, V.

2012-12-01

Leaf Area Index (LAI) and Fraction of Absorbed Photosynthetically Active Radiation (FAPAR) have been defined as Essential Climate Variables. Many Earth surface monitoring applications are based on global estimation combined with a relatively high frequency. The medium spatial resolution sensors (MRS), such as SPOT-VGT, MODIS or MERIS, have been widely used to provide land surface products (mainly LAI and FAPAR) to the scientific community. These products require quality assessment and consistency. However, due to consistency of the ground measurements spatial sampling, the medium resolution is not appropriate for direct validation with in situ measurements sampling. It is thus more adequate to use high spatial resolution sensors which can integrate the spatial variability. The recent availability of combined high spatial (8 m) and temporal resolutions (daily) Formosat-2 data allows to evaluate the accuracy and the temporal consistency of medium resolution sensors products. In this study, we proposed to validate MRS products over a cropland area and to analyze their spatial and temporal consistency. As a matter of fact, this study belongs to the Stage 2 of the validation, as defined by the Land Product Validation sub-group of the Earth Observation Satellites. Reference maps, derived from the aggregation of Formosat-2 data (acquired during the 2006-2010 period over croplands in southwest of France), were compared with (i) two existing global biophysical variables products (GEOV1/VGT and MODIS-15 coll. 5), and (ii) a new product (MODdaily) derived from the inversion of PROSAIL radiative transfer model (EMMAH, INRA Avignon) applied on MODIS BRDF-corrected daily reflectance. Their uncertainty was calculated with 105 LAI and FAPAR reference maps, which uncertainties (22 % for LAI and 12% for FAPAR) were evaluated with in situ measurements performed over maize, sunflower and soybean. Inter-comparison of coarse resolution (0.05°) products showed that LAI and FAPAR have consistent phenology (Figure). The GEOLAND-2 showed the smoothest time series due to a 30-day composite, while MODdaily noise was satisfactory (<12%). The RMSE of LAI calculated for the period 2006-2010 were 0.46 for GEOV1/VGT, 0.19 for MODIS-15 and 0.16 for MODdaily. A significant overestimation (bias=0.43) of the LAI peak were observed for GEOV1/VGT products, while MOD-15 showed a small underestimation (bias=-0.14) of highest LAI. Finally, over a larger area (a quarter of France) covered by cropland, grassland and forest, the products displayed a good spatial consistency.; LAI 2006-2010 time-series of a coarse resolution pixel of cropland (extent in upper-left corner). Products are compared to Formosat-2 reference maps.

Evaluation and comparison of gross primary production estimates for the Northern Great Plains grasslands

USGS Publications Warehouse

Zhang, Li; Wylie, Bruce K.; Loveland, Thomas R.; Fosnight, Eugene A.; Tieszen, Larry L.; Ji, Lei; Gilmanov, Tagir

2007-01-01

Two spatially-explicit estimates of gross primary production (GPP) are available for the Northern Great Plains. An empirical piecewise regression (PWR) GPP model was developed from flux tower measurements to map carbon flux across the region. The Moderate Resolution Imaging Spectrometer (MODIS) GPP model is a process-based model that uses flux tower data to calibrate its parameters. Verification and comparison of the regional PWR GPP and the global MODIS GPP are important for the modeling of grassland carbon flux. This study compared GPP estimates from PWR and MODIS models with five towers in the grasslands. Among them, PWR GPP and MODIS GPP showed a good agreement with tower-based GPP at three towers. The global MODIS GPP, however, did not agree well with tower-based GPP at two other towers, probably because of the insensitivity of MODIS model to regional ecosystem and climate change and extreme soil moisture conditions. Cross-validation indicated that the PWR model is relatively robust for predicting regional grassland GPP. However, the PWR model should include a wide variety of flux tower data as the training data sets to obtain more accurate results.In addition, GPP maps based on the PWR and MODIS models were compared for the entire region. In the northwest and south, PWR GPP was much higher than MODIS GPP. These areas were characterized by the higher water holding capacity with a lower proportion of C4 grasses in the northwest and a higher proportion of C4 grasses in the south. In the central and southeastern regions, PWR GPP was much lower than MODIS GPP under complicated conditions with generally mixed C3/C4 grasses. The analysis indicated that the global MODIS GPP model has some limitations on detecting moisture stress, which may have been caused by the facts that C3 and C4 grasses are not distinguished, water stress is driven by vapor pressure deficit (VPD) from coarse meteorological data, and MODIS land cover data are unable to differentiate the sub-pixel cropland components.

On-Orbit Calibration and Performance of Aqua MODIS Reflective Solar Bands

NASA Technical Reports Server (NTRS)

Xiong, Xiaoxiong; Sun, Junqiang; Xie, Xiaobo; Barnes, William; Salomonson, Vincent

2009-01-01

Aqua MODIS has successfully operated on-orbit for more than 6 years since its launch in May 2002, continuously making global observations and improving studies of changes in the Earth's climate and environment. 20 of the 36 MODIS spectral bands, covering wavelengths from 0.41 to 2.2 microns, are the reflective solar bands (RSB). They are calibrated on-orbit using an on-board solar diffuser (SD) and a solar diffuser stability monitor (SDSM). In addition, regularly scheduled lunar observations are made to track the RSB calibration stability. This paper presents Aqua MODIS RSB on-orbit calibration and characterization activities, methodologies, and performance. Included in this study are characterizations of detector signal-to-noise ratio (SNR), short-term stability, and long-term response change. Spectral wavelength dependent degradation of the SD bidirectional reflectance factor (BRF) and scan mirror reflectance, which also varies with angle of incidence (AOI), are examined. On-orbit results show that Aqua MODIS onboard calibrators have performed well, enabling accurate calibration coefficients to be derived and updated for the Level 1B (L1B) production and assuring high quality science data products to be continuously generated and distributed. Since launch, the short-term response, on a scan-by-scan basis, has remained extremely stable for most RSB detectors. With the exception of band 6, there have been no new RSB noisy or inoperable detectors. Like its predecessor, Terra MODIS, launched in December 1999, the Aqua MODIS visible (VIS) spectral bands have experienced relatively large changes, with an annual response decrease (mirror side 1) of 3.6% for band 8 at 0.412 microns, 2.3% for band 9 at 0.443 microns, 1.6% for band 3 at 0.469 microns, and 1.2% for band 10 at 0.488 microns. For other RSB bands with wavelengths greater than 0.5 microns, the annual response changes are typically less than 0.5%. In general, Aqua MODIS optics degradation is smaller than Terra MODIS and the mirror side differences are much smaller. Overall, Aqua MODIS RSB on-orbit performance is better than Terra MODIS.

On-Orbit Performance and Calibration Improvements For the Reflective Solar Bands of Terra and Aqua MODIS

NASA Technical Reports Server (NTRS)

Angal, Amit; Xiong, Xiaoxiong; Wu, Aisheng; Chen, Hongda; Geng, Xu; Link, Daniel; Li, Yonghong; Wald, Andrew; Brinkmann, Jake

2016-01-01

Moderate Resolution Imaging Spectroradiometer (MODIS) is the keystone instrument for NASAs EOS Terra and Aqua missions, designed to extend and improve heritage sensor measurements and data records of the land, oceans and atmosphere. The reflective solar bands (RSB) of MODIS covering wavelengths from 0.41 micrometers to 2.2 micrometers, are calibrated on-orbit using a solar diffuser (SD), with its on-orbit bi-directional reflectance factor (BRF) changes tracked using a solar diffuser stability monitor (SDSM). MODIS is a scanning radiometer using a two-sided paddle-wheel mirror to collect earth view (EV) data over a range of (+/-)55 deg. off instrument nadir. In addition to the solar calibration provided by the SD and SDSM system, lunar observations at nearly constant phase angles are regularly scheduled to monitor the RSB calibration stability. For both Terra and Aqua MODIS, the SD and lunar observations are used together to track the on-orbit changes of RSB response versus scan angle (RVS) as the SD and SV port are viewed at different angles of incidence (AOI) on the scan mirror. The MODIS Level 1B (L1B) Collection 6 (C6) algorithm incorporated several enhancements over its predecessor Collection 5 (C5) algorithm. A notable improvement was the use of the earth-view (EV) response trends from pseudo-invariant desert targets to characterize the on-orbit RVS for select RSB (Terra bands 1-4, 8, 9 and Aqua bands 8, 9) and the time, AOI, and wavelength-dependent uncertainty. The MODIS Characterization Support Team (MCST) has been maintaining and enhancing the C6 algorithm since its first update in November, 2011 for Aqua MODIS, and February, 2012 for Terra MODIS. Several calibration improvements have been incorporated that include extending the EV-based RVS approach to other RSB, additional correction for SD degradation at SWIR wavelengths, and alternative approaches for on-orbit RVS characterization. In addition to the on-orbit performance of the MODIS RSB, this paper also discusses in detail the recent calibration improvements implemented in the MODIS L1B C6.

Using NASA's Interactive Visualization and Image Extraction Tool AppEEARS to Assess Differences between MODIS and VIIRS

NASA Astrophysics Data System (ADS)

Neeley, S.

2017-12-01

The Visible Infrared Imaging Radiometer Suite (VIIRS) sensor aboard the Suomi-NPP satellite is designed to provide data continuity with the Moderate Resolution Imaging Spectroradiometer (MODIS) sensors aboard NASA's Terra and Aqua satellites. VIIRS data products are generated in a similar format as MODIS using modified algorithms and aim to extend the data lifecycle of MODIS products, which are widely used in a variety of scientific disciplines. However, there are differences in the characteristics of the instruments that could influence decision making when conducting a study involving a combination of products from both sensors. Inter-sensor comparison studies between VIIRS and MODIS have highlighted some of the inconsistencies between the sensors, including calibrated radiances, pixel sizes, swath widths, and spectral response functions of the bands. These differences should be well-understood among the science community as these inconsistencies could potentially effect the results of time-series analyses or land change studies that rely on using VIIRS and MODIS data products in combination. An efficient method to identify and better understand differences between data products will allow for the science community to make informed decisions when conducting analyses using a combination of VIIRS and MODIS data products. NASA's Application for Extracting and Exploring Analysis Ready Samples (AppEEARS) tool enables users to efficiently compare MODIS and VIIRS data products, including surface reflectance from 2012 to present. AppEEARS is a user-friendly image extraction tool used to order spatial and temporal data subsets, reproject data, and visualize output sample results before data download. AppEEARs allows users to compare MODIS and VIIRS data products by providing interactive visualizations and summary statistics of each dataset-either over a specific point or region of interest across a period of time. This tool enhances decision-making when using newly available VIIRS products combined with MODIS as it allows for data inconsistencies to be explored before the data is downloaded. Here, we demonstrate how AppEEARS enables users to perform comparisons across VIIRS and MODIS Surface Reflectance products and provide a detailed review of characteristic differences between the instruments.

Can Biomarkers Help Target Maturity-Onset Diabetes of the Young Genetic Testing in Antibody-Negative Diabetes?

PubMed

Majidi, Shideh; Fouts, Alexandra; Pyle, Laura; Chambers, Christina; Armstrong, Taylor; Wang, Zhenyuan; Batish, Sat Dev; Klingensmith, Georgeanna; Steck, Andrea K

2018-02-01

Maturity-onset diabetes of the young (MODY) is an antibody-negative, autosomal dominant form of diabetes. With the increasing prevalence of diabetes and the expense of MODY testing, markers to identify those who need further genetic testing would be beneficial. We investigated whether HLA genotypes, random C-peptide, and/or high-sensitivity C-reactive protein (hsCRP) levels could be helpful biomarkers for identifying MODY in antibody-negative diabetes. Subjects (N = 97) with diabetes onset ≤age 25, measurable C-peptide (≥0.1 ng/mL), and negative for all four diabetes autoantibodies were enrolled at a large academic center and tested for MODY 1-5 through Athena Diagnostics. A total of 22 subjects had a positive or very likely pathogenic mutation for MODY. Random C-peptide levels were significantly different between MODY-positive and MODY-negative subjects (0.16 nmol/L vs. 0.02 nmol/L; P = 0.02). After adjusting for age and diabetes duration, hsCRP levels were significantly lower in MODY-positive subjects (0.37 mg/L vs. 0.87 mg/L; P = 0.02). Random C-peptide level ≥0.15 nmol/L obtained at ≥6 months after diagnosis had 83% sensitivity for diagnosis of MODY with a negative predictive value of 96%. Receiver operating characteristic curves showed that area under the curve for random C-peptide (0.75) was significantly better than hsCRP (0.54), high-risk HLA DR3/4-DQB1*0302 (0.59), and high-risk HLA/random C-peptide combined (0.54; P = 0.03). Random C-peptide obtained at ≥6 months after diagnosis can be a useful biomarker to identify antibody-negative individuals who need further genetic testing for MODY, whereas hsCRP and HLA do not appear to improve this antibody/C-peptide-based approach.

Intercomparisons of Marine Boundary Layer Cloud Properties from the ARM CAP-MBL Campaign and Two MODIS Cloud Products

NASA Technical Reports Server (NTRS)

Zhang, Zhibo; Dong, Xiquan; Xi, Baike; Song, Hua; Ma, Po-Lun; Ghan, Steven J.; Platnick, Steven; Minnis, Patrick

2017-01-01

From April 2009 to December 2010, the Department of Energy (DOE) Atmospheric Radiation Measurement (ARM) program carried out an observational field campaign on Graciosa Island, targeting the marine boundary layer (MBL) clouds over the Azores region. In this paper, we present an inter-comparison of the MBL cloud properties, namely, cloud liquid water path (LWP), cloud optical thickness (COT) and cloud-droplet effective radius (CER), among retrievals from the ARM mobile facility (AMF) and two Moderate Resolution Spectroradiometer (MODIS) cloud products (GSFC-MODIS and CERES-MODIS). A total of 63 daytime single-layer MBL cloud cases are selected for inter-comparison. Comparison of collocated retrievals indicates that the two MODIS cloud products agree well on both COT and CER retrievals, with the correlation coefficient R greater than 0.95 despite their significant difference in spatial sampling. In both MODIS products, the CER retrievals based on the 2.1 micrometers band (CER(sub 2.1)) is significantly smaller than that based on the 3.7 micrometers band (CER(sub 3.7)). The GSFC-MODIS cloud product is collocated and compared with ground-based ARM observations at several temporal spatial scales. In general, the correlation increases with more precise collocation. For the 63 selected MBL cloud cases, the GSFC-MODIS LWP and COT retrievals agree reasonably well with the ground-based observations with no apparent bias and correlation coefficient R around 0.85 and 0.70, respectively. However, GSFC-MODIS CER(sub 3.7) and CER(sub 2.1) retrievals have a lower correlation (R is approximately 0.5) with the ground-based retrievals. For the 63 selected cases, they are on average larger than ground observations by about 1.5 micrometers and 3.0 micrometers, respectively. Taking into account that the MODIS CER retrievals are only sensitive to cloud top reduces the bias only by 0.5 micrometers.

Should the negativity for islet cell autoantibodies be used in a prescreening for genetic testing in maturity-onset diabetes of the young? The case of autoimmunity-associated destruction of pancreatic β-cells in a family of HNF1A-MODY subjects.

PubMed

Urbanová, Jana; Rypáčková, Blanka; Kučera, Petr; Anděl, Michal; Heneberg, Petr

2013-01-01

It was recently suggested that routine islet cell autoantibody testing should be performed to discriminate maturity-onset diabetes of the young (MODY) from type 1 diabetes mellitus (T1DM). This is the first report ever to describe the familial manifestation of T1DM autoimmunity in nonobese HNF1A-MODY subjects and the presence of islet antigen-2 (IA-2) antibodies in MODY subjects. Three nonobese subjects in an age range of 14-35 years were diagnosed with HNF1A-MODY (p. Arg159Gln mutation). All the tested subjects had detectable (but varying) levels of islet cell autoantibodies (i.e., antibodies against glutamate decarboxylase or IA-2) in the absence of other T1DM characteristics. They displayed long-term expression of intermediate fasting C-peptide levels, ketoacidosis was absent even in periods of spontaneous insulin withdrawal, and full dependence on externally administered insulin was not detected in any of them although better glycemic control was achieved when insulin was supplemented. The course of the disease was similar to that of the autoantibody-negative HNF1A-MODY subjects. The case questions the selectivity of autoantibodies as a marker of T1DM or late-onset autoimmune diabetes of adulthood (LADA) over MODY and challenges the use of autoantibodies as a universal negative marker of MODY in an effort to decrease the cost of health care, as it may eventually lead to the wrong diagnosis and thus to the incorrect treatment. Further research should involve examination of the autoantibody titers and prevalence in large and geographically diverse cohorts of MODY subjects selected for genetic testing (regardless of their autoantibody titers) as well as determination of the islet cell autoantibody kinetics in the course of MODY onset and progression. Copyright © 2013 S. Karger AG, Basel.

Remote Sensing of Ecosystem Light Use Efficiency Using MODIS

NASA Astrophysics Data System (ADS)

Huemmrich, K. F.; Middleton, E.; Landis, D.; Black, T. A.; Barr, A. G.; McCaughey, J. H.; Hall, F.

2009-12-01

Understanding the dynamics of the global carbon cycle requires an accurate determination of the spatial and temporal distribution of photosynthetic CO2 uptake by terrestrial vegetation. Optimal photosynthetic function is negatively affected by stress factors that cause down-regulation (i.e., reduced rate of photosynthesis). Present modeling approaches to determine ecosystem carbon exchange rely on meteorological data as inputs to models that predict the relative photosynthetic function in response to environmental conditions inducing stress (e.g., drought, high/low temperatures). This study examines the determination of ecosystem photosynthetic light use efficiency (LUE) from remote sensing, through measurement of vegetation spectral reflectance changes associated with physiologic stress responses exhibited by photosynthetic pigments. This approach uses the Moderate-Resolution Spectroradiometer (MODIS) on Aqua and Terra to provide frequent, narrow-band measurements. The reflective ocean MODIS bands were used to calculate the Photochemical Reflectance Index (PRI), an index that is sensitive to reflectance changes near 531nm associated with vegetation stress responses exhibited by photosynthetic pigments in the xanthophyll cycle. MODIS PRI values were compared with LUE calculated from CO2 flux measured at four Canadian forest sites: A mature Douglas fir site in British Columbia, mature aspen and black spruce sites in Saskatchewan, and a mixed forest site in Ontario, all part of the Canadian Carbon Program network. The relationships between LUE and MODIS PRI were different among forest types, with clear differences in the slopes of the relationships for conifer and deciduous forests. The MODIS based LUE measurements provide a more accurate estimation of observed LUE than the values calculated in the MODIS GPP model. This suggests the possibility of a GPP model that uses MODIS LUE instead of modeled LUE. This type of model may provide a useful contrast to existing models driven by meteorological data. The main impediment to developing such a model is the lack of a MODIS product that provides surface reflectance for the MODIS ocean bands over land.

A browser-based 3D Visualization Tool designed for comparing CERES/CALIOP/CloudSAT level-2 data sets.

NASA Astrophysics Data System (ADS)

Chu, C.; Sun-Mack, S.; Chen, Y.; Heckert, E.; Doelling, D. R.

2017-12-01

In Langley NASA, Clouds and the Earth's Radiant Energy System (CERES) and Moderate Resolution Imaging Spectroradiometer (MODIS) are merged with Cloud-Aerosol Lidar with Orthogonal Polarization (CALIOP) on the Cloud-Aerosol Lidar and Infrared Pathfinder Satellite Observation (CALIPSO) and CloudSat Cloud Profiling Radar (CPR). The CERES merged product (C3M) matches up to three CALIPSO footprints with each MODIS pixel along its ground track. It then assigns the nearest CloudSat footprint to each of those MODIS pixels. The cloud properties from MODIS, retrieved using the CERES algorithms, are included in C3M with the matched CALIPSO and CloudSat products along with radiances from 18 MODIS channels. The dataset is used to validate the CERES retrieved MODIS cloud properties and the computed TOA and surface flux difference using MODIS or CALIOP/CloudSAT retrieved clouds. This information is then used to tune the computed fluxes to match the CERES observed TOA flux. A visualization tool will be invaluable to determine the cause of these large cloud and flux differences in order to improve the methodology. This effort is part of larger effort to allow users to order the CERES C3M product sub-setted by time and parameter as well as the previously mentioned visualization capabilities. This presentation will show a new graphical 3D-interface, 3D-CERESVis, that allows users to view both passive remote sensing satellites (MODIS and CERES) and active satellites (CALIPSO and CloudSat), such that the detailed vertical structures of cloud properties from CALIPSO and CloudSat are displayed side by side with horizontally retrieved cloud properties from MODIS and CERES. Similarly, the CERES computed profile fluxes whether using MODIS or CALIPSO and CloudSat clouds can also be compared. 3D-CERESVis is a browser-based visualization tool that makes uses of techniques such as multiple synchronized cursors, COLLADA format data and Cesium.

Intercomparisons of marine boundary layer cloud properties from the ARM CAP-MBL campaign and two MODIS cloud products

NASA Astrophysics Data System (ADS)

Zhang, Zhibo; Dong, Xiquan; Xi, Baike; Song, Hua; Ma, Po-Lun; Ghan, Steven J.; Platnick, Steven; Minnis, Patrick

2017-02-01

From April 2009 to December 2010, the Department of Energy Atmospheric Radiation Measurement (ARM) program carried out an observational field campaign on Graciosa Island, targeting the marine boundary layer (MBL) clouds over the Azores region. In this paper, we present an intercomparison of the MBL cloud properties, namely, cloud liquid water path (LWP), cloud optical thickness (COT), and cloud-droplet effective radius (CER), among retrievals from the ARM mobile facility and two Moderate Resolution Imaging Spectroradiometer (MODIS) cloud products (Goddard Space Flight Center (GSFC)-MODIS and Clouds and Earth's Radiant Energy System-MODIS). A total of 63 daytime single-layer MBL cloud cases are selected for intercomparison. Comparison of collocated retrievals indicates that the two MODIS cloud products agree well on both COT and CER retrievals, with the correlation coefficient R > 0.95, despite their significant difference in spatial sampling. In both MODIS products, the CER retrievals based on the 2.1 µm band (CER2.1) are significantly larger than those based on the 3.7 µm band (CER3.7). The GSFC-MODIS cloud product is collocated and compared with ground-based ARM observations at several temporal-spatial scales. In general, the correlation increases with more precise collocation. For the 63 selected MBL cloud cases, the GSFC-MODIS LWP and COT retrievals agree reasonably well with the ground-based observations with no apparent bias and correlation coefficient R around 0.85 and 0.70, respectively. However, GSFC-MODIS CER3.7 and CER2.1 retrievals have a lower correlation (R 0.5) with the ground-based retrievals. For the 63 selected cases, they are on average larger than ground observations by about 1.5 µm and 3.0 µm, respectively. Taking into account that the MODIS CER retrievals are only sensitive to cloud top reduces the bias only by 0.5 µm.

Comparisons of Satellite-Deduced Overlapping Cloud Properties and CALIPSO CloudSat Data

NASA Technical Reports Server (NTRS)

Chang, Fu-Lung; Minnis, Patrick; Lin, Bing; Sun-Mack, Sunny

2010-01-01

Introduction to the overlapped cloud properties derived from polar-orbiting (MODIS) and geostationary (GOES-12, -13, Meteosat-8, -9, etc.) meteorological satellites, which are produced at the NASA Langley Research Center (LaRC) cloud research & development team (NASA lead scientist: Dr. Patrick Minnis). Comparison of the LaRC CERES MODIS Edition-3 overlapped cloud properties to the CALIPSO and the CloudSat active sensing data. High clouds and overlapped clouds occur frequently as deduced by CALIPSO (44 & 25%), CloudSat (25 & 4%), and MODIS (37 & 6%). Large fractions of optically-thin cirrus and overlapped clouds are deduced from CALIPSO, but much smaller fractions are from CloudSat and MODIS. For overlapped clouds, the averaged upper-layer CTHs are about 12.8 (CALIPSO), 10.9 (CloudSat) and 10 km (MODIS), and the averaged lower-layer CTHs are about 3.6 (CALIPSO), 3.2 (CloudSat) and 3.9 km (MODIS). Based on comparisons of upper and lower-layer cloud properties as deduced from the MODIS, CALIPSO and CloudSat data, more enhanced passive satellite methods for retrieving thin cirrus and overlapped cloud properties are needed and are under development.

Evaluation of the MODIS Retrievals of Dust Aerosol over the Ocean during PRIDE

NASA Technical Reports Server (NTRS)

Levy, Robert C.; Remer, Lorraine A.; Tanre, Didier; Kaufman, Yoram J.; Ichoku, Charles; Holben, Brent N.; Livingston, John M.; Russell, Philip B.; Maring, Hal

2002-01-01

The Puerto Rico Dust Experiment (PRIDE) took place in Roosevelt Roads, Puerto Rico from June 26 to July 24,2000 to study the radiative and physical properties of African dust aerosol transported into the region. PRIDE had the unique distinction of being the first major field experiment to allow direct comparison of aerosol retrievals from the MODerate Imaging Spectro-radiometer (MODIS) with sunphotometer and in-situ aerosol measurements. Over the ocean, the MODIS algorithm retrieves aerosol optical depth (AOD) as well as information about the aerosols size distribution. During PRIDE, MODIS derived AODs in the red wavelengths (0.66 micrometers) compare closely with AODs measured from sunphotometers, but, are too large at blue and green wavelengths (0.47 and 0.55 micrometers) and too small in the infrared (0.87 micrometers). This discrepancy of spectral slope results in particle size distributions retrieved by MODIS that are small compared to in-situ measurements, and smaller still when compared to sunphotometer sky radiance inversions. The differences in size distributions are, at least in part, associated with MODIS simplification of dust as spherical particles. Analysis of this PRIDE data set is a first step towards derivation of realistic non-spherical models for future MODIS retrievals.

Potential of VIIRS Data for Regional Monitoring of Gypsy Moth Defoliation: Implications for Forest Threat Early Warning System

NASA Technical Reports Server (NTRS)

Spruce, Joseph P.; Ryan, Robert E.; Smoot, James C.; Prados, Donald; McKellip, Rodney; Sader. Steven A.; Gasser, Jerry; May, George; Hargrove, William

2007-01-01

A NASA RPC (Rapid Prototyping Capability) experiment was conducted to assess the potential of VIIRS (Visible/Infrared Imager/Radiometer Suite) data for monitoring non-native gypsy moth (Lymantria dispar) defoliation of forests. This experiment compares defoliation detection products computed from simulated VIIRS and from MODIS (Moderate Resolution Imaging Spectroradiometer) time series products as potential inputs to a forest threat EWS (Early Warning System) being developed for the USFS (USDA Forest Service). Gypsy moth causes extensive defoliation of broadleaved forests in the United States and is specifically identified in the Healthy Forest Restoration Act (HFRA) of 2003. The HFRA mandates development of a national forest threat EWS. This system is being built by the USFS and NASA is aiding integration of needed satellite data products into this system, including MODIS products. This RPC experiment enabled the MODIS follow-on, VIIRS, to be evaluated as a data source for EWS forest monitoring products. The experiment included 1) assessment of MODIS-simulated VIIRS NDVI products, and 2) evaluation of gypsy moth defoliation mapping products from MODIS-simulated VIIRS and from MODIS NDVI time series data. This experiment employed MODIS data collected over the approximately 15 million acre mid-Appalachian Highlands during the annual peak defoliation time frame (approximately June 10 through July 27) during 2000-2006. NASA Stennis Application Research Toolbox software was used to produce MODIS-simulated VIIRS data and NASA Stennis Time Series Product Tool software was employed to process MODIS and MODIS-simulated VIIRS time series data scaled to planetary reflectance. MODIS-simulated VIIRS data was assessed through comparison to Hyperion-simulated VIIRS data using data collected during gypsy moth defoliation. Hyperion-simulated MODIS data showed a high correlation with actual MODIS data (NDVI R2 of 0.877 and RMSE of 0.023). MODIS-simulated VIIRS data for the same date showed moderately high correlation with Hyperion-simulated VIIRS data (NDVI R2 of 0.62 and RMSE of 0.035), even though the datasets were collected about a half an hour apart during changing weather conditions. MODIS products (MOD02, MOD09, and MOD13) and MOD02-simulated VIIRS time series data were used to generate defoliation mapping products based on image classification and image differencing change detection techniques. Accuracy of final defoliation mapping products was assessed by image interpreting over 170 randomly sampled locations found on Landsat and ASTER data in conjunction with defoliation map data from the USFS. The MOD02-simulated VIIRS 400-meter NDVI classification produced a similar overall accuracy (87.28 percent with 0.72 Kappa) to the MOD02 250-meter NDVI classification (86.71 percent with 0.71 Kappa). In addition, the VIIRS 400-meter NDVI, MOD02 250-meter NDVI, and MOD02 500-meter NDVI showed good user and producer accuracies for the defoliated forest class (70 percent) and acceptable Kappa values (0.66). MOD02 and MOD02-simulated VIIRS data both showed promise as data sources for regional monitoring of forest disturbance due to insect defoliation.

Recent Update on MODIS/VIIRS Deep Blue Data Continuity and New Aerosol Products

NASA Technical Reports Server (NTRS)

Hsu, N. Christina; Sayer, Andrew M.; Lee, Jaehwa; Bettenhausen, Corey; Carletta, N.; Tsay, Si-Chee

2016-01-01

The MODIS VIIRS 2016 Science Team Meeting was held June 6-10, 2016 at the Sheraton in Silver Spring, MD. The organizers plan to post the presentations and posters here: http:modis.gsfc.nasa.govsci_teammeetings201606.

The Use of MODIS NDVI Data for Characterizing Cropland Across the Great Lakes Basin

EPA Science Inventory

The Moderate Resolution Imaging Spectroradiometer (MODIS) provides new opportunities for characterizing land-cover (LC) to support monitoring and assessment studies at watershed, regional and global scales. This research evaluated the potential for using the MODIS Normalized Diff...

MODIS. Volume 1: MODIS level 1A software baseline requirements

NASA Technical Reports Server (NTRS)

Masuoka, Edward; Fleig, Albert; Ardanuy, Philip; Goff, Thomas; Carpenter, Lloyd; Solomon, Carl; Storey, James

1994-01-01

This document describes the level 1A software requirements for the moderate resolution imaging spectroradiometer (MODIS) instrument. This includes internal and external requirements. Internal requirements include functional, operational, and data processing as well as performance, quality, safety, and security engineering requirements. External requirements include those imposed by data archive and distribution systems (DADS); scheduling, control, monitoring, and accounting (SCMA); product management (PM) system; MODIS log; and product generation system (PGS). Implementation constraints and requirements for adapting the software to the physical environment are also included.

Marine Boundary Layer Cloud Property Retrievals from High-Resolution ASTER Observations: Case Studies and Comparison with Terra MODIS

NASA Technical Reports Server (NTRS)

Werner, Frank; Wind, Galina; Zhang, Zhibo; Platnick, Steven; Di Girolamo, Larry; Zhao, Guangyu; Amarasinghe, Nandana; Meyer, Kerry

2016-01-01

A research-level retrieval algorithm for cloud optical and microphysical properties is developed for the Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) aboard the Terra satellite. It is based on the operational MODIS algorithm. This paper documents the technical details of this algorithm and evaluates the retrievals for selected marine boundary layer cloud scenes through comparisons with the operational MODIS Data Collection 6 (C6) cloud product. The newly developed, ASTERspecific cloud masking algorithm is evaluated through comparison with an independent algorithm reported in Zhao and Di Girolamo (2006). To validate and evaluate the cloud optical thickness (tau) and cloud effective radius (r(sub eff)) from ASTER, the high-spatial-resolution ASTER observations are first aggregated to the same 1000m resolution as MODIS. Subsequently, tau(sub aA) and r(sub eff, aA) retrieved from the aggregated ASTER radiances are compared with the collocated MODIS retrievals. For overcast pixels, the two data sets agree very well with Pearson's product-moment correlation coefficients of R greater than 0.970. However, for partially cloudy pixels there are significant differences between r(sub eff, aA) and the MODIS results which can exceed 10 micrometers. Moreover, it is shown that the numerous delicate cloud structures in the example marine boundary layer scenes, resolved by the high-resolution ASTER retrievals, are smoothed by the MODIS observations. The overall good agreement between the research-level ASTER results and the operational MODIS C6 products proves the feasibility of MODIS-like retrievals from ASTER reflectance measurements and provides the basis for future studies concerning the scale dependency of satellite observations and three-dimensional radiative effects.

Validation of MODIS 3 km land aerosol optical depth from NASA's EOS Terra and Aqua missions

NASA Astrophysics Data System (ADS)

Gupta, Pawan; Remer, Lorraine A.; Levy, Robert C.; Mattoo, Shana

2018-05-01

In addition to the standard resolution product (10 km), the MODerate resolution Imaging Spectroradiometer (MODIS) Collection 6 (C006) data release included a higher resolution (3 km). Other than accommodations for the two different resolutions, the 10 and 3 km Dark Target (DT) algorithms are basically the same. In this study, we perform global validation of the higher-resolution aerosol optical depth (AOD) over global land by comparing against AErosol RObotic NETwork (AERONET) measurements. The MODIS-AERONET collocated data sets consist of 161 410 high-confidence AOD pairs from 2000 to 2015 for Terra MODIS and 2003 to 2015 for Aqua MODIS. We find that 62.5 and 68.4 % of AODs retrieved from Terra MODIS and Aqua MODIS, respectively, fall within previously published expected error bounds of ±(0.05 + 0.2 × AOD), with a high correlation (R = 0.87). The scatter is not random, but exhibits a mean positive bias of ˜ 0.06 for Terra and ˜ 0.03 for Aqua. These biases for the 3 km product are approximately 0.03 larger than the biases found in similar validations of the 10 km product. The validation results for the 3 km product did not have a relationship to aerosol loading (i.e., true AOD), but did exhibit dependence on quality flags, region, viewing geometry, and aerosol spatial variability. Time series of global MODIS-AERONET differences show that validation is not static, but has changed over the course of both sensors' lifetimes, with Terra MODIS showing more change over time. The likely cause of the change of validation over time is sensor degradation, but changes in the distribution of AERONET stations and differences in the global aerosol system itself could be contributing to the temporal variability of validation.

Calibration of the DSCOVR EPIC Visible and NIR Channels using MODIS Terra and Aqua Data and EPIC Lunar Observations

NASA Technical Reports Server (NTRS)

Geogdzhayev, Igor V.; Marshak, Alexander

2018-01-01

The unique position of the Deep Space Climate Observatory (DSCOVR) Earth Polychromatic Imaging Camera (EPIC) at the Lagrange 1 point makes an important addition to the data from currently operating low Earth orbit observing instruments. EPIC instrument does not have an onboard calibration facility. One approach to its calibration is to compare EPIC observations to the measurements from polar-orbiting radiometers. Moderate Resolution Imaging Spectroradiometer (MODIS) is a natural choice for such comparison due to its well-established calibration record and wide use in remote sensing. We use MODIS Aqua and Terra L1B 1km reflectances to infer calibration coefficients for four EPIC visible and NIR channels: 443, 551, 680 and 780 nm. MODIS and EPIC measurements made between June 2015 and 2016 are employed for comparison. We first identify favorable MODIS pixels with scattering angle matching temporarily collocated EPIC observations. Each EPIC pixel is then spatially collocated to a subset of the favorable MODIS pixels within 25 km radius. Standard deviation of the selected MODIS pixels as well as of the adjacent EPIC pixels is used to find the most homogeneous scenes. These scenes are then used to determine calibration coefficients using a linear regression between EPIC counts/sec and reflectances in the close MODIS spectral channels. We present thus inferred EPIC calibration coefficients and discuss sources of uncertainties. The lunar EPIC observations are used to calibrate EPIC O2 absorbing channels (688 and 764 nm), assuming that there is a small difference between moon reflectances separated by approx.10 nm in wavelength provided the calibration factors of the red (680 nm) and near-IR (780 nm) are known from comparison between EPIC and MODIS.

Detection rates of the MODIS active fire product in the United States

USGS Publications Warehouse

Hawbaker, T.J.; Radeloff, V.C.; Syphard, A.D.; Zhu, Z.; Stewart, S.I.

2008-01-01

MODIS active fire data offer new information about global fire patterns. However, uncertainties in detection rates can render satellite-derived fire statistics difficult to interpret. We evaluated the MODIS 1??km daily active fire product to quantify detection rates for both Terra and Aqua MODIS sensors, examined how cloud cover and fire size affected detection rates, and estimated how detection rates varied across the United States. MODIS active fire detections were compared to 361 reference fires (??? 18??ha) that had been delineated using pre- and post-fire Landsat imagery. Reference fires were considered detected if at least one MODIS active fire pixel occurred within 1??km of the edge of the fire. When active fire data from both Aqua and Terra were combined, 82% of all reference fires were found, but detection rates were less for Aqua and Terra individually (73% and 66% respectively). Fires not detected generally had more cloudy days, but not when the Aqua data were considered exclusively. MODIS detection rates decreased with fire size, and the size at which 50% of all fires were detected was 105??ha when combining Aqua and Terra (195??ha for Aqua and 334??ha for Terra alone). Across the United States, detection rates were greatest in the West, lower in the Great Plains, and lowest in the East. The MODIS active fire product captures large fires in the U.S. well, but may under-represent fires in areas with frequent cloud cover or rapidly burning, small, and low-intensity fires. We recommend that users of the MODIS active fire data perform individual validations to ensure that all relevant fires are included. ?? 2008 Elsevier Inc. All rights reserved.

Updates on the development of Deep Blue aerosol algorithm for constructing consistent long-term data records from MODIS to VIIRS

NASA Astrophysics Data System (ADS)

Hsu, N. Y. C.; Sayer, A. M.; Lee, J.; Kim, W. V.

2017-12-01

The impacts of natural and anthropogenic sources of air pollution on climate and human health have continued to gain attention from the scientific community. In order to facilitate these effects, high quality consistent long-term global aerosol data records from satellites are essential. Several EOS-era instruments (e.g., SeaWiFS, MODIS, and MISR) are able to provide such information with a high degree of fidelity. However, with the aging MODIS sensors and the launch of the VIIRS instrument on Suomi NPP in late 2011, the continuation of long-term aerosol data records suitable for climate studies from MODIS to VIIRS is needed urgently. Recently, we have successfully modified our MODIS Deep Blue algorithm to process the VIIRS data. Extensive works were performed in refining the surface reflectance determination scheme to account for the wavelength differences between MODIS and VIIRS. Better aerosol models (including non-spherical dust) are also now implemented in our VIIRS algorithm compared to the MODIS C6 algorithm. We will show the global (land and ocean) distributions of various aerosol products from Version 1 of the VIIRS Deep Blue data set. The preliminary validation results of these new VIIRS Deep Blue aerosol products using data from AERONET sunphotometers over land and ocean will be discussed. We will also compare the monthly averaged Deep Blue aerosol optical depth (AOD) from VIIRS with the MODIS C6 products to investigate if any systematic biases may exist between MODIS C6 and VIIRS AOD. The Version 1 VIIRS Deep Blue aerosol products are currently scheduled to be released to the public in 2018.

Marine boundary layer cloud property retrievals from high-resolution ASTER observations: case studies and comparison with Terra MODIS

NASA Astrophysics Data System (ADS)

Werner, Frank; Wind, Galina; Zhang, Zhibo; Platnick, Steven; Di Girolamo, Larry; Zhao, Guangyu; Amarasinghe, Nandana; Meyer, Kerry

2016-12-01

A research-level retrieval algorithm for cloud optical and microphysical properties is developed for the Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) aboard the Terra satellite. It is based on the operational MODIS algorithm. This paper documents the technical details of this algorithm and evaluates the retrievals for selected marine boundary layer cloud scenes through comparisons with the operational MODIS Data Collection 6 (C6) cloud product. The newly developed, ASTER-specific cloud masking algorithm is evaluated through comparison with an independent algorithm reported in [Zhao and Di Girolamo(2006)]. To validate and evaluate the cloud optical thickness (τ) and cloud effective radius (reff) from ASTER, the high-spatial-resolution ASTER observations are first aggregated to the same 1000 m resolution as MODIS. Subsequently, τaA and reff, aA retrieved from the aggregated ASTER radiances are compared with the collocated MODIS retrievals. For overcast pixels, the two data sets agree very well with Pearson's product-moment correlation coefficients of R > 0.970. However, for partially cloudy pixels there are significant differences between reff, aA and the MODIS results which can exceed 10 µm. Moreover, it is shown that the numerous delicate cloud structures in the example marine boundary layer scenes, resolved by the high-resolution ASTER retrievals, are smoothed by the MODIS observations. The overall good agreement between the research-level ASTER results and the operational MODIS C6 products proves the feasibility of MODIS-like retrievals from ASTER reflectance measurements and provides the basis for future studies concerning the scale dependency of satellite observations and three-dimensional radiative effects.

De novo mutations of GCK, HNF1A and HNF4A may be more frequent in MODY than previously assumed.

PubMed

Stanik, Juraj; Dusatkova, Petra; Cinek, Ondrej; Valentinova, Lucia; Huckova, Miroslava; Skopkova, Martina; Dusatkova, Lenka; Stanikova, Daniela; Pura, Mikulas; Klimes, Iwar; Lebl, Jan; Gasperikova, Daniela; Pruhova, Stepanka

2014-03-01

MODY is mainly characterised by an early onset of diabetes and a positive family history of diabetes with an autosomal dominant mode of inheritance. However, de novo mutations have been reported anecdotally. The aim of this study was to systematically revisit a large collection of MODY patients to determine the minimum prevalence of de novo mutations in the most prevalent MODY genes (i.e. GCK, HNF1A, HNF4A). Analysis of 922 patients from two national MODY centres (Slovakia and the Czech Republic) identified 150 probands (16%) who came from pedigrees that did not fulfil the criterion of two generations with diabetes but did fulfil the remaining criteria. The GCK, HNF1A and HNF4A genes were analysed by direct sequencing. Mutations in GCK, HNF1A or HNF4A genes were detected in 58 of 150 individuals. Parents of 28 probands were unavailable for further analysis, and in 19 probands the mutation was inherited from an asymptomatic parent. In 11 probands the mutations arose de novo. In our cohort of MODY patients from two national centres the de novo mutations in GCK, HNF1A and HNF4A were present in 7.3% of the 150 families without a history of diabetes and 1.2% of all of the referrals for MODY testing. This is the largest collection of de novo MODY mutations to date, and our findings indicate a much higher frequency of de novo mutations than previously assumed. Therefore, genetic testing of MODY could be considered for carefully selected individuals without a family history of diabetes.

USAID Expands eMODIS Coverage for Famine Early Warning

NASA Astrophysics Data System (ADS)

Jenkerson, C.; Meyer, D. J.; Evenson, K.; Merritt, M.

2011-12-01

Food security in countries at risk is monitored by U.S. Agency for International Development (USAID) through its Famine Early Warning Systems Network (FEWS NET) using many methods including Moderate Resolution Imaging Spectroradiometer (MODIS) data processed by U.S. Geological Survey (USGS) into eMODIS Normalized Difference Vegetation Index (NDVI) products. Near-real time production is used comparatively with trends derived from the eMODIS archive to operationally monitor vegetation anomalies indicating threatened cropland and rangeland conditions. eMODIS production over Central America and the Caribbean (CAMCAR) began in 2009, and processes 10-day NDVI composites every 5 days from surface reflectance inputs produced using predicted spacecraft and climatology information at Land and Atmosphere Near real time Capability for Earth Observing Systems (EOS) (LANCE). These expedited eMODIS composites are backed by a parallel archive of precision-based NDVI calculated from surface reflectance data ordered through Level 1 and Atmosphere Archive and Distribution System (LAADS). Success in the CAMCAR region led to the recent expansion of eMODIS production to include Africa in 2010, and Central Asia in 2011. Near-real time 250-meter products are available for each region on the last day of an acquisition interval (generally before midnight) from an anonymous file transfer protocol (FTP) distribution site (ftp://emodisftp.cr.usgs.gov/eMODIS). The FTP site concurrently hosts the regional historical collections (2000 to present) which are also searchable using the USGS Earth Explorer (http://edcsns17.cr.usgs.gov/NewEarthExplorer). As eMODIS coverage continues to grow, these geographically gridded, georeferenced tagged image file format (GeoTIFF) NDVI composites increase their utility as effective tools for operational monitoring of near-real time vegetation data against historical trends.

A multi-scale assessment of forest primary production across the eastern USA using Forest Inventory and Analysis (FIA) and MODIS data

NASA Astrophysics Data System (ADS)

Kwon, Youngsang

As evidence of global warming continues to increase, being able to predict the relationship between forest growth rate and climate factors will be vital to maintain the sustainability and productivity of forests. Comprehensive analyses of forest primary production across the eastern US were conducted using remotely sensed MODIS and field-based FIA datasets. This dissertation primarily explored spatial patterns of gross and net carbon uptake in the eastern USA, and addressed three objectives. 1) Examine the use of pixel- and plot-scale screening variables to validate MODIS GPP predictions with Forest Inventory and Analysis (FIA) NPP measures. 2) Assess the net primary production (NPP) from MODIS and FIA at increasing levels of spatial aggregation using a hexagonal tiling system. 3) Assess the carbon use efficiency (CUE) calculated using a direct ratio of MODIS NPP to MODIS GPP and a standardized ratio of FIA NPP to MODIS GPP. The first objective was analyzed using total of 54,969 MODIS pixels and co-located FIA plots to validate MODIS GPP estimates. Eight SVs were used to test six hypotheses about the conditions under which MODIS GPP would be most strongly validated. SVs were assessed in terms of the tradeoff between improved relations and reduced number of samples. MODIS seasonal variation and FIA tree density were the two most efficient SVs followed by basic quality checks for each data set. The sequential application of SVs provided an efficient dataset of 17,090 co-located MODIS pixels and FIA plots, that raised the Pearson's correlation coefficient from 0.01 for the complete dataset of 54,969 plots to 0.48 for this screened subset of 17,090 plots. The second objective was addressed by aggregating data over increasing spatial extents so as to not lose plot- and pixel-level information. These data were then analyzed to determine the optimal scale with which to represent the spatial pattern of NPP. The results suggested an optimal scale of 390 km2. At that scale MODIS and FIA were most strongly correlated while maximizing the number of observation. The maps conveyed both local-scale spatial structure from FIA and broad-scale climatic trends from MODIS. The third objective examined whether carbon use efficiency (CUE) was constant or variable in relation to forest types, and to geographic and climatic variables. The results indicated that while CUEs exhibited unclear patterns by forest types, CUEs are variable to other environmental variables. CUEs are most strongly related to the climatic factors of precipitation followed by temperature. More complex and weaker relationships were found for the geographic factors of latitude and altitude, as they reflected a combination of phenomenological driving forces. The results of the three objectives will help us to identify factors that control carbon cycles and to quantify forest productivity. This will help improve our knowledge about how forest primary productivity may change in relation to ongoing climate change.

Remote Sensing of Water Vapor and Thin Cirrus Clouds using MODIS Near-IR Channels

NASA Technical Reports Server (NTRS)

Gao, Bo-Cai; Kaufman, Yoram J.

2001-01-01

The Moderate Resolution Imaging Spectroradiometer (MODIS), a major facility instrument on board the Terra Spacecraft, was successfully launched into space in December of 1999. MODIS has several near-IR channels within and around the 0.94 micrometer water vapor bands for remote sensing of integrated atmospheric water vapor over land and above clouds. MODIS also has a special near-IR channel centered at 1.375-micron with a width of 30 nm for remote sensing of cirrus clouds. In this paper, we describe briefly the physical principles on remote sensing of water vapor and cirrus clouds using these channels. We also present sample water vapor images and cirrus cloud images obtained from MODIS data.

Producing Global Science Products for the Moderate Resolution Imaging Spectroradiometer (MODIS) in MODAPS

NASA Technical Reports Server (NTRS)

Masuoka, Edward J.; Tilmes, Curt A.; Ye, Gang; Devine, Neal; Smith, David E. (Technical Monitor)

2000-01-01

The MODerate resolution Imaging Spectroradiometer (MODIS) was launched on NASA's EOS-Terra spacecraft December 1999. With 36 spectral bands covering the visible, near wave and short wave infrared. MODIS produces over 40 global science data products, including sea surface temperature, ocean color, cloud properties, vegetation indices land surface temperature and land cover change. The MODIS Data Processing System (MODAPS) produces 400 GB/day of global MODIS science products from calibrated radiances generated in the Earth Observing System Data and Information System (EOSDIS). The science products are shipped to the EOSDIS for archiving and distribution to the public. An additional 200 GB of products are shipped each day to MODIS team members for quality assurance and validation of their products. In the sections that follow, we will describe the architecture of the MODAPS, identify processing bottlenecks encountered in scaling MODAPS from 50 GB/day backup system to a 400 GB/day production system and discuss how these were handled.

Comparative Analysis of Aerosol Retrievals from MODIS, OMI and MISR Over Sahara Region

NASA Technical Reports Server (NTRS)

Lyapustin, A.; Wang, Y.; Hsu, C.; Terres, O.; Leptoukh, G.; Kalashnikova, O.; Korkin, S.

2011-01-01

MODIS is a wide field-of-view sensor providing daily global observations of the Earth. Currently, global MODIS aerosol retrievals over land are performed with the main Dark Target algorithm complimented with the Deep Blue (DB) Algorithm over bright deserts. The Dark Target algorithm relies on surface parameterization which relates reflectance in MODIS visible bands with the 2.1 micrometer region, whereas the Deep Blue algorithm uses an ancillary angular distribution model of surface reflectance developed from the time series of clear-sky MODIS observations. Recently, a new Multi-Angle Implementation of Atmospheric Correction (MAIAC) algorithm has been developed for MODIS. MAIAC uses a time series and an image based processing to perform simultaneous retrievals of aerosol properties and surface bidirectional reflectance. It is a generic algorithm which works over both dark vegetative surfaces and bright deserts and performs retrievals at 1 km resolution. In this work, we will provide a comparative analysis of DB, MAIAC, MISR and OMI aerosol products over bright deserts of northern Africa.

MODIS Observations of Smoke and Fires

NASA Technical Reports Server (NTRS)

Kaufman, Yoram; Ichoku, Charles; Remer, Lorraine; Lau, William K. M. (Technical Monitor)

2002-01-01

The MODIS (Moderate Resolution Imaging Spectroradiometer) instruments collect daily measurements of our planet since early 2000 from the Terra spaceborne polar platform. It has unique channels to observe smoke over land and ocean and to observe fires. Using unsaturated channels at 3.9 micron MODIS detects the fires and estimates the fire radiative energy. Using solar channels in the visible (0.47 and 0.66 micron) and in the mid IR (2.1 micron) MODIS measures the smoke optical thickness distribution and evolution over the land. Seven Channels in the solar spectrum are used to detect the smoke properties and distribution over the oceans. Data from the Aerosol Robotic Network, are used to validate the MODIS observations. The MODIS aerosol data presented in a movie form is used to observe the generation of smoke plumes and their dispersion around the globe. For example a key conclusion is that smoke in particular from Southern Africa can pollute significantly the 'pristine' Southern Hemisphere zonal range of 45'S-60'S, and the Northern Pacific.

Towards a systematic nationwide screening strategy for MODY.

PubMed

Shields, Beverley; Colclough, Kevin

2017-04-01

MODY is an early-onset monogenic form of diabetes. Correctly identifying MODY is of considerable importance as diagnosing the specific genetic subtype can inform the optimal treatment, with many patients being able to discontinue unnecessary insulin treatment. Diagnostic molecular genetic testing to confirm MODY is expensive, so screening strategies are required to identify the most appropriate patients for testing. In this issue of Diabetologia, Johansson and colleagues (DOI 10.1007/s00125-016-4167-1 ) describe a nationwide systematic screening approach to identify individuals with MODY in the paediatric age range. They focused testing on patients negative for both GAD and islet antigen 2 (IA-2) islet autoantibodies, thereby ruling out those with markers of type 1 diabetes, the most common form of diabetes in this age group. This commentary discusses the advantages and limitations of the approach, and the caution required when interpreting variants of uncertain pathogenicity identified from testing whole populations rather than targeting only patients with a strong MODY phenotype.

Impact of Sensor Degradation on the MODIS NDVI Time Series

NASA Technical Reports Server (NTRS)

Wang, Dongdong; Morton, Douglas Christopher; Masek, Jeffrey; Wu, Aisheng; Nagol, Jyoteshwar; Xiong, Xiaoxiong; Levy, Robert; Vermote, Eric; Wolfe, Robert

2012-01-01

Time series of satellite data provide unparalleled information on the response of vegetation to climate variability. Detecting subtle changes in vegetation over time requires consistent satellite-based measurements. Here, the impact of sensor degradation on trend detection was evaluated using Collection 5 data from the Moderate Resolution Imaging Spectroradiometer (MODIS) sensors on the Terra and Aqua platforms. For Terra MODIS, the impact of blue band (Band 3, 470 nm) degradation on simulated surface reflectance was most pronounced at near-nadir view angles, leading to a 0.001-0.004 yr-1 decline in Normalized Difference Vegetation Index (NDVI) under a range of simulated aerosol conditions and surface types. Observed trends in MODIS NDVI over North America were consistentwith simulated results,with nearly a threefold difference in negative NDVI trends derived from Terra (17.4%) and Aqua (6.7%) MODIS sensors during 2002-2010. Planned adjustments to Terra MODIS calibration for Collection 6 data reprocessing will largely eliminate this negative bias in detection of NDVI trends.

Impact of Sensor Degradation on the MODIS NDVI Time Series

NASA Technical Reports Server (NTRS)

Wang, Dongdong; Morton, Douglas; Masek, Jeffrey; Wu, Aisheng; Nagol, Jyoteshwar; Xiong, Xiaoxiong; Levy, Robert; Vermote, Eric; Wolfe, Robert

2011-01-01

Time series of satellite data provide unparalleled information on the response of vegetation to climate variability. Detecting subtle changes in vegetation over time requires consistent satellite-based measurements. Here, we evaluated the impact of sensor degradation on trend detection using Collection 5 data from the Moderate Resolution Imaging Spectroradiometer (MODIS) sensors on the Terra and Aqua platforms. For Terra MODIS, the impact of blue band (Band 3, 470nm) degradation on simulated surface reflectance was most pronounced at near-nadir view angles, leading to a 0.001-0.004/yr decline in Normalized Difference Vegetation Index (NDVI) under a range of simulated aerosol conditions and surface types. Observed trends MODIS NDVI over North America were consistent with simulated results, with nearly a threefold difference in negative NDVI trends derived from Terra (17.4%) and Aqua (6.7%) MODIS sensors during 2002-2010. Planned adjustments to Terra MODIS calibration for Collection 6 data reprocessing will largely eliminate this negative bias in NDVI trends over vegetation.

Evaluation of AIRS, MODIS, and HIRS 11 Micron Brightness Temperature Difference Changes from 2002 through 2006

NASA Technical Reports Server (NTRS)

Broberg, Steven E.; Aumann, Hartmut H.; Gregorich, David T.; Xiong, X.

2006-01-01

In an effort to validate the accuracy and stability of AIRS data at low scene temperatures (200-250 K range), we evaluated brightness temperatures at 11 microns with Aqua MODIS band 31 and HIRS/3 channel 8 for Antarctic granules between September 2002 and May 2006. We found excellent agreement with MODIS (at the 0.2 K level) over the full emperature range in data from early in the Aqua mission. However, in more recent data, starting in April 2005, we found a scene temperature dependence in MODIS-AIRS brightness temperature differences, with a discrepancy of 1- 1.5 K at 200 K. The comparison between AIRS and HIRS/3 (channel 8) on NOAA 16 for the same time period yields excellent agreement. The cause and time dependence of the disagreement with MODIS is under evaluation, but the change was coincident with a change in the MODIS production software from collection 4 to 5.

[Comparison of GIMMS and MODIS normalized vegetation index composite data for Qing-Hai-Tibet Plateau].

PubMed

Du, Jia-Qiang; Shu, Jian-Min; Wang, Yue-Hui; Li, Ying-Chang; Zhang, Lin-Bo; Guo, Yang

2014-02-01

Consistent NDVI time series are basic and prerequisite in long-term monitoring of land surface properties. Advanced very high resolution radiometer (AVHRR) measurements provide the longest records of continuous global satellite measurements sensitive to live green vegetation, and moderate resolution imaging spectroradiometer (MODIS) is more recent typical with high spatial and temporal resolution. Understanding the relationship between the AVHRR-derived NDVI and MODIS NDVI is critical to continued long-term monitoring of ecological resources. NDVI time series acquired by the global inventory modeling and mapping studies (GIMMS) and Terra MODIS were compared over the same time periods from 2000 to 2006 at four scales of Qinghai-Tibet Plateau (whole region, sub-region, biome and pixel) to assess the level of agreement in terms of absolute values and dynamic change by independently assessing the performance of GIMMS and MODIS NDVI and using 495 Landsat samples of 20 km x20 km covering major land cover type. High correlations existed between the two datasets at the four scales, indicating their mostly equal capability of capturing seasonal and monthly phenological variations (mostly at 0. 001 significance level). Simi- larities of the two datasets differed significantly among different vegetation types. The relative low correlation coefficients and large difference of NDVI value between the two datasets were found among dense vegetation types including broadleaf forest and needleleaf forest, yet the correlations were strong and the deviations were small in more homogeneous vegetation types, such as meadow, steppe and crop. 82% of study area was characterized by strong consistency between GIMMS and MODIS NDVI at pixel scale. In the Landsat NDVI vs. GIMMS and MODIS NDVI comparison of absolute values, the MODIS NDVI performed slightly better than GIMMS NDVI, whereas in the comparison of temporal change values, the GIMMS data set performed best. Similar with comparison results of GIMMS and MODIS NDVI, the consistency across the three datasets was clearly different among various vegetation types. In dynamic changes, differences between Landsat and MODIS NDVI were smaller than Landsat NDVI vs. GIMMS NDVI for forest, but Landsat and GIMMS NDVI agreed better for grass and crop. The results suggested that spatial patterns and dynamic trends of GIMMS NDVI were found to be in overall acceptable agreement with MODIS NDVI. It might be feasible to successfully integrate historical GIMMS and more recent MODIS NDVI to provide continuity of NDVI products. The accuracy of merging AVHRR historical data recorded with more modern MODIS NDVI data strongly depends on vegetation type, season and phenological period, and spatial scale. The integration of the two datasets for needleleaf forest, broadleaf forest, and for all vegetation types in the phenological transition periods in spring and autumn should be treated with caution.

Control of ACAT2 liver expression by HNF4{alpha}: lesson from MODY1 patients.

PubMed

Pramfalk, C; Karlsson, E; Groop, L; Rudel, L L; Angelin, B; Eriksson, M; Parini, P

2009-08-01

ACAT2 is thought to be responsible for cholesteryl ester production in chylomicron and VLDL assembly. Recently, we identified HNF1alpha as an important regulator of the human ACAT2 promoter. Thus, we hypothesized that MODY3 (HNF1alpha gene mutations) and possibly MODY1 (HNF4alpha, upstream regulator of HNF1alpha, gene mutations) subjects may have lower VLDL esterified cholesterol. Serum analysis and lipoprotein separation using size-exclusion chromatography were performed in controls and MODY1 and MODY3 subjects. In vitro analyses included mutagenesis and cotransfections in HuH7 cells. Finally, the relevance in vivo of these findings was tested by ChIP assays in human liver. Whereas patients with MODY3 had normal lipoprotein composition, those with MODY1 had lower levels of VLDL and LDL esterified cholesterol, as well as of VLDL triglyceride. Mutagenesis revealed one important HNF4 binding site in the human ACAT2 promoter. ChIP assays and protein-to-protein interaction studies showed that HNF4alpha, directly or indirectly (via HNF1alpha), can bind to the ACAT2 promoter. We identified HNF4alpha as an important regulator of the hepatocyte-specific expression of the human ACAT2 promoter. Our results suggest that the lower levels of esterified cholesterol in VLDL- and LDL-particles in patients with MODY1 may-at least in part-be attributable to lower ACAT2 activity in these patients.

Application and Comparison of the MODIS-Derived Enhanced Vegetation Index to VIIRS, Landsat 5 TM and Landsat 8 OLI Platforms: A Case Study in the Arid Colorado River Delta, Mexico.

PubMed

Jarchow, Christopher J; Didan, Kamel; Barreto-Muñoz, Armando; Nagler, Pamela L; Glenn, Edward P

2018-05-13

The Enhanced Vegetation Index (EVI) is a key Earth science parameter used to assess vegetation, originally developed and calibrated for the Moderate Resolution Imaging Spectroradiometer (MODIS) aboard the Terra and Aqua satellites. With the impending decommissioning of the MODIS sensors by the year 2020/2022, alternative platforms will need to be used to estimate EVI. We compared Landsat 5 (2000⁻2011), 8 (2013⁻2016) and the Visible Infrared Imaging Radiometer Suite (VIIRS; 2013⁻2016) to MODIS EVI (2000⁻2016) over a 420,083-ha area of the arid lower Colorado River Delta in Mexico. Over large areas with mixed land cover or agricultural fields, we found high correspondence between Landsat and MODIS EVI (R² = 0.93 for the entire area studied and 0.97 for agricultural fields), but the relationship was weak over bare soil (R² = 0.27) and riparian vegetation (R² = 0.48). The correlation between MODIS and Landsat EVI was higher over large, homogeneous areas and was generally lower in narrow riparian areas. VIIRS and MODIS EVI were highly similar (R² = 0.99 for the entire area studied) and did not show the same decrease in performance in smaller, narrower regions as Landsat. Landsat and VIIRS provide EVI estimates of similar quality and characteristics to MODIS, but scale, seasonality and land cover type(s) should be considered before implementing Landsat EVI in a particular area.

Terra and Aqua MODIS Thermal Emissive Bands On-Orbit Calibration and Performance

NASA Technical Reports Server (NTRS)

Xiong, Xiaoxiong; Wu, Aisheng; Wenny, Brian N.; Madhavan, Sriharsha; Wang, Zhipeng; Li, Yonghong; Chen, Na; Barnes, William L.; Salomonson, Vincent V.

2015-01-01

Since launch, the Moderate Resolution Imaging Spectroradiometer (MODIS) instruments on the Terra and Aqua spacecraft have operated successfully for more than 14 and 12 years, respectively. A key instrument for National Aeronautics and Space Administration Earth Observing System missions, MODIS was designed to make continuous observations for studies of Earth's land, ocean, and atmospheric properties and to extend existing data records from heritage Earth observing sensors. The 16 thermal emissive bands (TEBs) (3.75-14.24 micrometers) are calibrated on orbit using a temperature controlled blackbody (BB). Both Terra and Aqua MODIS BBs have displayed minimal drift over the mission lifetime, and the seasonal variations of the BB temperature are extremely small in Aqua MODIS. The long-term gain and noise equivalent difference in temperature performance of the 160 TEB detectors on both MODIS instruments have been well behaved and generally very stable. Small but noticeable variations of Aqua MODIS bands 33-36 (13.34-14.24 micrometer) response in recent years are primarily due to loss of temperature control margin of its passive cryoradiative cooler. As a result, fixed calibration coefficients, previously used by bands when the BB temperature is above their saturation temperatures, are replaced by the focal-plane-temperature-dependent calibration coefficients. This paper presents an overview of the MODIS TEB calibration, the on-orbit performance, and the challenging issues likely to impact the instruments as they continue operating well past their designed lifetime of six years.

Influence of Humidity on the Aerosol Scattering Coefficient and Its Effect on the Upwelling Radiance During ACE-2

NASA Technical Reports Server (NTRS)

Gasso, B. S.; Hegg, D. A.; Covert, D. S.; Collins, D.; Noone, K.; Oestroem, E.; Schmid, B.; Russell, P. B.; Livingston, J. M.; Durkee, P. A.;

Accuracy Assessment of Aqua-MODIS Aerosol Optical Depth Over Coastal Regions: Importance of Quality Flag and Sea Surface Wind Speed

NASA Technical Reports Server (NTRS)

Anderson, J. C.; Wang, J.; Zeng, J.; Petrenko, M.; Leptoukh, G. G.; Ichoku, C.

2012-01-01

Coastal regions around the globe are a major source for anthropogenic aerosols in the atmosphere, but the underlying surface characteristics are not favorable for the Moderate Resolution Imaging Spectroradiometer (MODIS) algorithms designed for retrieval of aerosols over dark land or open-ocean surfaces. Using data collected from 62 coastal stations worldwide from the Aerosol Robotic Network (AERONET) from approximately 2002-2010, accuracy assessments are made for coastal aerosol optical depth (AOD) retrieved from MODIS aboard Aqua satellite. It is found that coastal AODs (at 550 nm) characterized respectively by the MODIS Dark Land (hereafter Land) surface algorithm, the Open-Ocean (hereafter Ocean) algorithm, and AERONET all exhibit a log-normal distribution. After filtering by quality flags, the MODIS AODs respectively retrieved from the Land and Ocean algorithms are highly correlated with AERONET (with R(sup 2) is approximately equal to 0.8), but only the Land algorithm AODs fall within the expected error envelope greater than 66% of the time. Furthermore, the MODIS AODs from the Land algorithm, Ocean algorithm, and combined Land and Ocean product show statistically significant discrepancies from their respective counterparts from AERONET in terms of mean, probability density function, and cumulative density function, which suggest a need for future improvement in retrieval algorithms. Without filtering with quality flag, the MODIS Land and Ocean AOD dataset can be degraded by 30-50% in terms of mean bias. Overall, the MODIS Ocean algorithm overestimates the AERONET coastal AOD by 0.021 for AOD less than 0.25 and underestimates it by 0.029 for AOD greater than 0.25. This dichotomy is shown to be related to the ocean surface wind speed and cloud contamination effects on the satellite aerosol retrieval. The Modern Era Retrospective-Analysis for Research and Applications (MERRA) reveals that wind speeds over the global coastal region 25 (with a mean and median value of 2.94 meters per second and 2.66 meters per second, respectively) are often slower than 6 meters per second assumed in the MODIS Ocean algorithm. As a result of high correlation (R(sup 2) greater than 0.98) between the bias in binned MODIS AOD and the corresponding binned wind speed over the coastal sea surface, an empirical scheme for correcting the bias of AOD retrieved from the MODIS Ocean algorithm is formulated and is shown to be effective over the majority of the coastal AERONET stations, and hence can be used in future analysis of AOD trend and MODIS AOD data assimilation.

Scientific impact of MODIS C5 calibration degradation and C6+ improvements

NASA Astrophysics Data System (ADS)

Lyapustin, A.; Wang, Y.; Xiong, X.; Meister, G.; Platnick, S.; Levy, R.; Franz, B.; Korkin, S.; Hilker, T.; Tucker, J.; Hall, F.; Sellers, P.; Wu, A.; Angal, A.

2014-12-01

The Collection 6 (C6) MODIS (Moderate Resolution Imaging Spectroradiometer) land and atmosphere data sets are scheduled for release in 2014. C6 contains significant revisions of the calibration approach to account for sensor aging. This analysis documents the presence of systematic temporal trends in the visible and near-infrared (500 m) bands of the Collection 5 (C5) MODIS Terra and, to lesser extent, in MODIS Aqua geophysical data sets. Sensor degradation is largest in the blue band (B3) of the MODIS sensor on Terra and decreases with wavelength. Calibration degradation causes negative global trends in multiple MODIS C5 products including the dark target algorithm's aerosol optical depth over land and Ångström exponent over the ocean, global liquid water and ice cloud optical thickness, as well as surface reflectance and vegetation indices, including the normalized difference vegetation index (NDVI) and enhanced vegetation index (EVI). As the C5 production will be maintained for another year in parallel with C6, one objective of this paper is to raise awareness of the calibration-related trends for the broad MODIS user community. The new C6 calibration approach removes major calibrations trends in the Level 1B (L1B) data. This paper also introduces an enhanced C6+ calibration of the MODIS data set which includes an additional polarization correction (PC) to compensate for the increased polarization sensitivity of MODIS Terra since about 2007, as well as detrending and Terra-Aqua cross-calibration over quasi-stable desert calibration sites. The PC algorithm, developed by the MODIS ocean biology processing group (OBPG), removes residual scan angle, mirror side and seasonal biases from aerosol and surface reflectance (SR) records along with spectral distortions of SR. Using the multiangle implementation of atmospheric correction (MAIAC) algorithm over deserts, we have also developed a detrending and cross-calibration method which removes residual decadal trends on the order of several tenths of 1% of the top-of-atmosphere (TOA) reflectance in the visible and near-infrared MODIS bands B1-B4, and provides a good consistency between the two MODIS sensors. MAIAC analysis over the southern USA shows that the C6+ approach removed an additional negative decadal trend of Terra ΔNDVI ~ 0.01 as compared to Aqua data. This change is particularly important for analysis of vegetation dynamics and trends in the tropics, e.g., Amazon rainforest, where the morning orbit of Terra provides considerably more cloud-free observations compared to the afternoon Aqua measurements.

Scientific Impact of MODIS C5 Calibration Degradation and C6+ Improvements

NASA Technical Reports Server (NTRS)

Lyapustin, A.; Wang, Y.; Xiong, X.; Meister, G.; Platnick, S.; Levy, R.; Franz, B.; Korkin, S.; Hilker, T.; Tucker, J.;

Stormwater plume detection by MODIS imagery in the southern California coastal ocean

USGS Publications Warehouse

Nezlin, N.P.; DiGiacomo, P.M.; Diehl, D.W.; Jones, B.H.; Johnson, S.C.; Mengel, M.J.; Reifel, K.M.; Warrick, J.A.; Wang, M.

2008-01-01

Stormwater plumes in the southern California coastal ocean were detected by MODIS-Aqua satellite imagery and compared to ship-based data on surface salinity and fecal indicator bacterial (FIB) counts collected during the Bight'03 Regional Water Quality Program surveys in February-March of 2004 and 2005. MODIS imagery was processed using a combined near-infrared/shortwave-infrared (NIR-SWIR) atmospheric correction method, which substantially improved normalized water-leaving radiation (nLw) optical spectra in coastal waters with high turbidity. Plumes were detected using a minimum-distance supervised classification method based on nLw spectra averaged within the training areas, defined as circular zones of 1.5-5.0-km radii around field stations with a surface salinity of S 33.0 ('ocean'). The plume optical signatures (i.e., the nLw differences between 'plume' and 'ocean') were most evident during the first 2 days after the rainstorms. To assess the accuracy of plume detection, stations were classified into 'plume' and 'ocean' using two criteria: (1) 'plume' included the stations with salinity below a certain threshold estimated from the maximum accuracy of plume detection; and (2) FIB counts in 'plume' exceeded the California State Water Board standards. The salinity threshold between 'plume' and 'ocean' was estimated as 32.2. The total accuracy of plume detection in terms of surface salinity was not high (68% on average), seemingly because of imperfect correlation between plume salinity and ocean color. The accuracy of plume detection in terms of FIB exceedances was even lower (64% on average), resulting from low correlation between ocean color and bacterial contamination. Nevertheless, satellite imagery was shown to be a useful tool for the estimation of the extent of potentially polluted plumes, which was hardly achievable by direct sampling methods (in particular, because the grids of ship-based stations covered only small parts of the plumes detected via synoptic MODIS imagery). In most southern California coastal areas, the zones of bacterial contamination were much smaller than the areas of turbid plumes; an exception was the plume of the Tijuana River, where the zone of bacterial contamination was comparable with the zone of plume detected by ocean color. ?? 2008 Elsevier Ltd.

Sensitivity of an Integrated Mesoscale Atmosphere and Agriculture Land Modeling System (WRF/CMAQ-EPIC) to MODIS Vegetation and Lightning Assimilation

NASA Astrophysics Data System (ADS)

Ran, L.; Cooter, E. J.; Gilliam, R. C.; Foroutan, H.; Kang, D.; Appel, W.; Wong, D. C.; Pleim, J. E.; Benson, V.; Pouliot, G.

2017-12-01

The combined meteorology and air quality modeling system composed of the Weather Research and Forecast (WRF) model and Community Multiscale Air Quality (CMAQ) model is an important decision support tool that is used in research and regulatory decisions related to emissions, meteorology, climate, and chemical transport. The Environmental Policy Integrated Climate (EPIC) is a cropping model which has long been used in a range of applications related to soil erosion, crop productivity, climate change, and water quality around the world. We have integrated WRF/CMAQ with EPIC using the Fertilizer Emission Scenario Tool for CMAQ (FEST-C) to estimate daily soil N information with fertilization for CMAQ bi-directional ammonia flux modeling. Driven by the weather and N deposition from WRF/CMAQ, FEST-C EPIC simulations are conducted on 22 different agricultural production systems ranging from managed grass lands (e.g. hay and alfalfa) to crop lands (e.g. corn grain and soybean) with rainfed and irrigated information across any defined conterminous United States (U.S.) CMAQ domain and grid resolution. In recent years, this integrated system has been enhanced and applied in many different air quality and ecosystem assessment projects related to land-water-atmosphere interactions. These enhancements have advanced this system to become a valuable tool for integrated assessments of air, land and water quality in light of social drivers and human and ecological outcomes. This presentation will focus on evaluating the sensitivity of precipitation and N deposition in the integrated system to MODIS vegetation input and lightning assimilation and their impacts on agricultural production and fertilization. We will describe the integrated modeling system and evaluate simulated precipitation and N deposition along with other weather information (e.g. temperature, humidity) for 2011 over the conterminous U.S. at 12 km grids from a coupled WRF/CMAQ with MODIS and lightning assimilation. Simulated agricultural production and fertilization from FEST-C EPIC driven by the changed meteorology and N deposition from MODIS and lightning assimilations will be evaluated and analyzed.

Stormwater plume detection by MODIS imagery in the southern California coastal ocean

NASA Astrophysics Data System (ADS)

Nezlin, Nikolay P.; DiGiacomo, Paul M.; Diehl, Dario W.; Jones, Burton H.; Johnson, Scott C.; Mengel, Michael J.; Reifel, Kristen M.; Warrick, Jonathan A.; Wang, Menghua

2008-10-01

Stormwater plumes in the southern California coastal ocean were detected by MODIS-Aqua satellite imagery and compared to ship-based data on surface salinity and fecal indicator bacterial (FIB) counts collected during the Bight'03 Regional Water Quality Program surveys in February-March of 2004 and 2005. MODIS imagery was processed using a combined near-infrared/shortwave-infrared (NIR-SWIR) atmospheric correction method, which substantially improved normalized water-leaving radiation (nLw) optical spectra in coastal waters with high turbidity. Plumes were detected using a minimum-distance supervised classification method based on nLw spectra averaged within the training areas, defined as circular zones of 1.5-5.0-km radii around field stations with a surface salinity of S < 32.0 ("plume") and S > 33.0 ("ocean"). The plume optical signatures (i.e., the nLw differences between "plume" and "ocean") were most evident during the first 2 days after the rainstorms. To assess the accuracy of plume detection, stations were classified into "plume" and "ocean" using two criteria: (1) "plume" included the stations with salinity below a certain threshold estimated from the maximum accuracy of plume detection; and (2) FIB counts in "plume" exceeded the California State Water Board standards. The salinity threshold between "plume" and "ocean" was estimated as 32.2. The total accuracy of plume detection in terms of surface salinity was not high (68% on average), seemingly because of imperfect correlation between plume salinity and ocean color. The accuracy of plume detection in terms of FIB exceedances was even lower (64% on average), resulting from low correlation between ocean color and bacterial contamination. Nevertheless, satellite imagery was shown to be a useful tool for the estimation of the extent of potentially polluted plumes, which was hardly achievable by direct sampling methods (in particular, because the grids of ship-based stations covered only small parts of the plumes detected via synoptic MODIS imagery). In most southern California coastal areas, the zones of bacterial contamination were much smaller than the areas of turbid plumes; an exception was the plume of the Tijuana River, where the zone of bacterial contamination was comparable with the zone of plume detected by ocean color.

Polar Epsilon MODIS and Fused MODIS / RADARSAT MetOc Products for National Defence and Domestic Security

DTIC Science & Technology

2006-03-01

techniques [19]. Phytoplankton photosynthetic activity, which is estimated by MODIS by measuring chlorophyll fluorescence at 683 nm, and biomass...viii DRDC Ottawa TM 2006-067 This page intentionally left blank. DRDC Ottawa TM 2006-067 ix Table of contents ... contents ............................................................................................................................ ix List of

Application and Evaluation of MODIS LAI, FPAR, and Albedo Products in the WRF/CMAQ System

EPA Science Inventory

MODIS vegetation and albedo products provide a more realistic representation of surface conditions for input to the WRF/CMAQ modeling system. However, the initial evaluation of ingesting MODIS data into the system showed mixed results, with increased bias and error for 2-m temper...

Weapon Performance Testing and Analysis: The MODI-PAC Round, the Number 4 Lead-Shot Round, and the Flying Baton

DTIC Science & Technology

1976-01-01

items. The items tested were the MODI-PAC, a proprietary item of Reming)on Arms Company, a standard 12 - gauge round of No. 4 lead shot, and an...to refrain from testing this item. Therefore, the final selection of items for testing were (1) the MODI-PAC, (2) a standard 12 - gauge shotgun round of...The first item evaluated was the MODI-PAC5. The MOQ1-PAC which standsfor “modified impact “ is a 12 - gauge shotgun shell loaded with approximately 320

Progress in Understanding the Impacts of 3-D Cloud Structure on MODIS Cloud Property Retrievals for Marine Boundary Layer Clouds

NASA Technical Reports Server (NTRS)

Zhang, Zhibo; Werner, Frank; Miller, Daniel; Platnick, Steven; Ackerman, Andrew; DiGirolamo, Larry; Meyer, Kerry; Marshak, Alexander; Wind, Galina; Zhao, Guangyu

2016-01-01

Theory: A novel framework based on 2-D Tayler expansion for quantifying the uncertainty in MODIS retrievals caused by sub-pixel reflectance inhomogeneity. (Zhang et al. 2016). How cloud vertical structure influences MODIS LWP retrievals. (Miller et al. 2016). Observation: Analysis of failed MODIS cloud property retrievals. (Cho et al. 2015). Cloud property retrievals from 15m resolution ASTER observations. (Werner et al. 2016). Modeling: LES-Satellite observation simulator (Zhang et al. 2012, Miller et al. 2016).

Infrared Algorithm Development for Ocean Observations with EOS/MODIS

NASA Technical Reports Server (NTRS)

Brown, Otis B.

1997-01-01

Efforts continue under this contract to develop algorithms for the computation of sea surface temperature (SST) from MODIS infrared measurements. This effort includes radiative transfer modeling, comparison of in situ and satellite observations, development and evaluation of processing and networking methodologies for algorithm computation and data accession, evaluation of surface validation approaches for IR radiances, development of experimental instrumentation, and participation in MODIS (project) related activities. Activities in this contract period have focused on radiative transfer modeling, evaluation of atmospheric correction methodologies, undertake field campaigns, analysis of field data, and participation in MODIS meetings.

Sea Surface Temperature and Vegetation Index from MODIS

NASA Technical Reports Server (NTRS)

2002-01-01

This is a composite MODIS image showing the 'green wave' of spring in North America and sea surface temperature in the ocean, collected over an 8-day period during the first week in April 2000. On land, the darker green pixels show where the most green foliage is being produced due to photosynthetic activity. Yellows on land show where there is little or no productivity and red is a boundary zone. In the ocean, orange and yellows show warmer waters and blues show colder values. (MODIS Data Type: MODIS-PFM)

Potential for Expanding the Near Real Time ForWarn Regional Forest Monitoring System to Include Alaska

NASA Technical Reports Server (NTRS)

Spruce, Joseph P.; Gasser, Gerald; Hargrove, William; Smoot, James; Kuper, Philip D.

2014-01-01

The on-line near real time (NRT) ForWarn system is currently deployed to monitor regional forest disturbances within the conterminous United States (CONUS), using daily MODIS Aqua and Terra NDVI data to derive monitoring products. The Healthy Forest Restoration Act of 2003 mandated such a system. Work on ForWarn began in 2006 with development and validation of retrospective MODIS NDVI-based forest monitoring products. Subsequently, NRT forest disturbance monitoring products were demonstrated, leading to the actual system deployment in 2010. ForWarn provides new CONUS forest disturbance monitoring products every 8 days, using USGS eMODIS data for current NDVI. ForWarn currently does not cover Alaska, which includes extensive forest lands at risk to multiple biotic and abiotic threats. This poster discusses a case study using Alaska eMODIS Terra data to derive ForWarn like forest change products during the 2010 growing season. The eMODIS system provides current MODIS Terra NDVI products for Alaska. Resulting forest change products were assessed with ground, aerial, and Landsat reference data. When cloud and snow free, these preliminary products appeared to capture regional forest disturbances from insect defoliation and fires; however, more work is needed to mitigate cloud and snow contamination, including integration of eMODIS Aqua data.

Assessment of the Collection 6 Terra and Aqua MODIS bands 1 and 2 calibration performance

NASA Astrophysics Data System (ADS)

Wu, A.; Chen, X.; Angal, A.; Li, Y.; Xiong, X.

2015-09-01

MODIS (Moderate Resolution Imaging Spectroradiometer) is a key sensor aboard the Terra (EOS AM) and Aqua (EOS PM) satellites. MODIS collects data in 36 spectral bands and generates over 40 data products for land, atmosphere, cryosphere and oceans. MODIS bands 1 and 2 have nadir spatial resolution of 250 m, compared with 500 m for bands 3 to 7 and 1000 m for all the remaining bands, and their measurements are crucial to derive key land surface products. This study evaluates the calibration performance of the Collection-6 L1B for both Terra and Aqua MODIS bands 1 and 2 using three vicarious approaches. The first and second approaches focus on stability assessment using data collected from two pseudo-invariant sites, Libya 4 desert and Antarctic Dome C snow surface. The third approach examines the relative stability between Terra and Aqua in reference to a third sensor from a series of NOAA 15-19 Advanced Very High Resolution Radiometer (AVHRR). The comparison is based on measurements from MODIS and AVHRR Simultaneous Nadir Overpasses (SNO) over a thirteen-year period from 2002 to 2015. Results from this study provide a quantitative assessment of Terra and Aqua MODIS bands 1 and 2 calibration stability and the relative calibration differences between the two sensors.

Synergistic use of MODIS cloud products and AIRS radiance measurements for retrieval of cloud parameters

NASA Astrophysics Data System (ADS)

Li, J.; Menzel, W.; Sun, F.; Schmit, T.

2003-12-01

The Moderate-Resolution Imaging Spectroradiometer (MODIS) and Atmospheric Infrared Sounder (AIRS) measurements from the Earth Observing System's (EOS) Aqua satellite will enable global monitoring of the distribution of clouds. MODIS is able to provide at high spatial resolution (1 ~ 5km) the cloud mask, surface and cloud types, cloud phase, cloud-top pressure (CTP), effective cloud amount (ECA), cloud particle size (CPS), and cloud water path (CWP). AIRS is able to provide CTP, ECA, CPS, and CWP within the AIRS footprint with much better accuracy using its greatly enhanced hyperspectral remote sensing capability. The combined MODIS / AIRS system offers the opportunity for cloud products improved over those possible from either system alone. The algorithm developed was applied to process the AIRS longwave cloudy radiance measurements; results are compared with MODIS cloud products, as well as with the Geostationary Operational Environmental Satellite (GOES) sounder cloud products, to demonstrate the advantage of synergistic use of high spatial resolution MODIS cloud products and high spectral resolution AIRS sounder radiance measurements for optimal cloud retrieval. Data from ground-based instrumentation at the Atmospheric Radiation Measurement (ARM) Program Cloud and Radiation Test Bed (CART) in Oklahoma were used for the validation; results show that AIRS improves the MODIS cloud products in certain cases such as low-level clouds.

Cell Adhesion and in Vivo Osseointegration of Sandblasted/Acid Etched/Anodized Dental Implants

PubMed Central

Kim, Mu-Hyon; Park, Kyeongsoon; Choi, Kyung-Hee; Kim, Soo-Hong; Kim, Se Eun; Jeong, Chang-Mo; Huh, Jung-Bo

2015-01-01

The authors describe a new type of titanium (Ti) implant as a Modi-anodized (ANO) Ti implant, the surface of which was treated by sandblasting, acid etching (SLA), and anodized techniques. The aim of the present study was to evaluate the adhesion of MG-63 cells to Modi-ANO surface treated Ti in vitro and to investigate its osseointegration characteristics in vivo. Four different types of Ti implants were examined, that is, machined Ti (control), SLA, anodized, and Modi-ANO Ti. In the cell adhesion study, Modi-ANO Ti showed higher initial MG-63 cell adhesion and induced greater filopodia growth than other groups. In vivo study in a beagle model revealed the bone-to-implant contact (BIC) of Modi-ANO Ti (74.20% ± 10.89%) was much greater than those of machined (33.58% ± 8.63%), SLA (58.47% ± 12.89), or ANO Ti (59.62% ± 18.30%). In conclusion, this study demonstrates that Modi-ANO Ti implants produced by sandblasting, acid etching, and anodizing improve cell adhesion and bone ongrowth as compared with machined, SLA, or ANO Ti implants. These findings suggest that the application of Modi-ANO surface treatment could improve the osseointegration of dental implant. PMID:25955650

The Common HNF1A Variant I27L is a Modifier of Age at Diabetes Diagnosis in HNF1A-MODY Individuals.

PubMed

Locke, Jonathan M; Saint-Martin, Cécile; Laver, Thomas W; Patel, Kashyap A; Wood, Andrew R; Sharp, Seth A; Ellard, Sian; Bellanné-Chantelot, Christine; Hattersley, Andrew T; Harries, Lorna W; Weedon, Michael N

2018-06-12

There is wide variation in the age at diagnosis of diabetes in individuals with Maturity-Onset Diabetes of the Young (MODY) due to a mutation in the HNF1A gene. We hypothesised that common variants at the HNF1A locus (rs1169288, I27L; rs1800574, A98V), which are associated with type 2 diabetes susceptibility, may modify age at diabetes diagnosis in HNF1A-MODY individuals. Meta-analysis of two independent cohorts, comprising 781 HNF1A-MODY individuals, found no significant associations between genotype and age at diagnosis. However after stratifying according to type of mutation (protein-truncating variant (PTV) or missense), we found each 27L allele to be associated with a 1.6 year decrease (95% CI -2.6, -0.7) in age at diagnosis, specifically in the subset (n=444) of HNF1A-MODY individuals with a PTV. The effect size was similar and significant across the two independent cohorts of HNF1A-MODY individuals. We report a robust genetic modifier of HNF1A-MODY age at diagnosis that further illustrates the strong effect of genetic variation within HNF1A upon diabetes phenotype. © 2018 by the American Diabetes Association.

Retrieval of ice cloud properties using an optimal estimation algorithm and MODIS infrared observations: 1. Forward model, error analysis, and information content

NASA Astrophysics Data System (ADS)

Wang, Chenxi; Platnick, Steven; Zhang, Zhibo; Meyer, Kerry; Yang, Ping

2016-05-01

An optimal estimation (OE) retrieval method is developed to infer three ice cloud properties simultaneously: optical thickness (τ), effective radius (reff), and cloud top height (h). This method is based on a fast radiative transfer (RT) model and infrared (IR) observations from the MODerate resolution Imaging Spectroradiometer (MODIS). This study conducts thorough error and information content analyses to understand the error propagation and performance of retrievals from various MODIS band combinations under different cloud/atmosphere states. Specifically, the algorithm takes into account four error sources: measurement uncertainty, fast RT model uncertainty, uncertainties in ancillary data sets (e.g., atmospheric state), and assumed ice crystal habit uncertainties. It is found that the ancillary and ice crystal habit error sources dominate the MODIS IR retrieval uncertainty and cannot be ignored. The information content analysis shows that for a given ice cloud, the use of four MODIS IR observations is sufficient to retrieve the three cloud properties. However, the selection of MODIS IR bands that provide the most information and their order of importance varies with both the ice cloud properties and the ambient atmospheric and the surface states. As a result, this study suggests the inclusion of all MODIS IR bands in practice since little a priori information is available.

Retrieval of ice cloud properties using an optimal estimation algorithm and MODIS infrared observations. Part I: Forward model, error analysis, and information content.

PubMed

Wang, Chenxi; Platnick, Steven; Zhang, Zhibo; Meyer, Kerry; Yang, Ping

2016-05-27

An optimal estimation (OE) retrieval method is developed to infer three ice cloud properties simultaneously: optical thickness ( τ ), effective radius ( r eff ), and cloud-top height ( h ). This method is based on a fast radiative transfer (RT) model and infrared (IR) observations from the MODerate resolution Imaging Spectroradiometer (MODIS). This study conducts thorough error and information content analyses to understand the error propagation and performance of retrievals from various MODIS band combinations under different cloud/atmosphere states. Specifically, the algorithm takes into account four error sources: measurement uncertainty, fast RT model uncertainty, uncertainties in ancillary datasets (e.g., atmospheric state), and assumed ice crystal habit uncertainties. It is found that the ancillary and ice crystal habit error sources dominate the MODIS IR retrieval uncertainty and cannot be ignored. The information content analysis shows that, for a given ice cloud, the use of four MODIS IR observations is sufficient to retrieve the three cloud properties. However, the selection of MODIS IR bands that provide the most information and their order of importance varies with both the ice cloud properties and the ambient atmospheric and the surface states. As a result, this study suggests the inclusion of all MODIS IR bands in practice since little a priori information is available.

Can MODIS detect trends in aerosol optical depth over land?

NASA Astrophysics Data System (ADS)

Fan, Xuehua; Xia, Xiang'ao; Chen, Hongbin

2018-02-01

The Moderate Resolution Imaging Spectroradiometer (MODIS) sensor onboard NASA's Aqua satellite has been collecting valuable data about the Earth system for more than 14 years, and one of the benefits of this is that it has made it possible to detect the long-term variation in aerosol loading across the globe. However, the long-term aerosol optical depth (AOD) trends derived from MODIS need careful validation and assessment, especially over land. Using AOD products with at least 70 months' worth of measurements collected during 2002-15 at 53 Aerosol Robotic Network (AERONET) sites over land, Mann-Kendall (MK) trends in AOD were derived and taken as the ground truth data for evaluating the corresponding results from MODIS onboard Aqua. The results showed that the AERONET AOD trends over all sites in Europe and North America, as well as most sites in Africa and Asia, can be reproduced by MODIS/Aqua. However, disagreement in AOD trends between MODIS and AERONET was found at a few sites in Australia and South America. The AOD trends calculated from AERONET instantaneous data at the MODIS overpass times were consistent with those from AERONET daily data, which suggests that the AOD trends derived from satellite measurements of 1-2 overpasses may be representative of those from daily measurements.

Land Surface Temperature Measurements from EOS MODIS Data

NASA Technical Reports Server (NTRS)

Wan, Zheng-Ming

2004-01-01

This report summarizes the accomplishments made by the MODIS LST (Land-Surface Temperature) group at University of California, Santa Barbara, under NASA Contract. Version 1 of the MODIS Land-Surface Temperature Algorithm Theoretical Basis Document (ATBD) was reviewed in June 1994, version 2 reviewed in November 1994, version 3.1 in August 1996, and version 3.3 updated in April 1999. Based on the ATBD, two LST algorithms were developed, one is the generalized split-window algorithm and another is the physics-based day/night LST algorithm. These two LST algorithms were implemented into the production generation executive code (PGE 16) for the daily standard MODIS LST products at level-2 (MODII-L2) and level-3 (MODIIA1 at 1 km resolution and MODIIB1 at 5km resolution). PGE codes for 8-day 1 km LST product (MODIIA2) and the daily, 8-day and monthly LST products at 0.05 degree latitude/longitude climate model grids (CMG) were also delivered. Four to six field campaigns were conducted each year since 2000 to validate the daily LST products generated by PGE16 and the calibration accuracies of the MODIS TIR bands used for the LST/emissivity retrieval from versions 2-4 of Terra MODIS data and versions 3-4 of Aqua MODIS data. Validation results from temperature-based and radiance-based methods indicate that the MODIS LST accuracy is better than 1 C in most clear-sky cases in the range from -10 to 58 C. One of the major lessons learn from multi- year temporal analysis of the consistent V4 daily Terra MODIS LST products in 2000-2003 over some selected target areas including lakes, snow/ice fields, and semi-arid sites is that there are variable numbers of cloud-contaminated LSTs in the MODIS LST products depending on surface elevation, land cover types, and atmospheric conditions. A cloud-screen scheme with constraints on spatial and temporal variations in LSTs was developed to remove cloud-contaminated LSTs. The 5km LST product was indirectly validated through comparisons to the 1 km LST product. Twenty three papers related to the LST research work were published in journals over the last decade.

Sixteen Years of Terra MODIS On-Orbit Operation, Calibration, and Performance

NASA Technical Reports Server (NTRS)

Xiong, X.; Angal, A.; Wu, A.; Link, D.; Geng, X.; Barnes, W.; Solomonson, V.

2016-01-01

Terra MODIS has successfully operated for more than 16 years since its launch in December 1999. From its observations, many science data products have been generated in support of a broad range of research activities and remote sensing applications. Terra MODIS has operated in a number of configurations and experienced a few anomalies, including spacecraft and instrument related events. MODIS collects data in 36 spectral bands that are calibrated regularly by a set of on-board calibrators for their radiometric, spectral, and spatial performance. Periodic lunar observations and long-term radiometric trending over well-characterized ground targets are also used to support sensor on-orbit calibration. Dedicated efforts made by the MODIS Characterization Support Team (MCST) and continuing support from the MODIS Science Team have contributed to the mission success, enabling well-calibrated data products to be continuously generated and routinely delivered to users worldwide. This paper presents an overview of Terra MODIS mission operations, calibration activities, and instrument performance of the past 16 years. It illustrates and describes the results of key sensor performance parameters derived from on-orbit calibration and characterization, such as signal-to-noise ratio (SNR), noise equivalent temperature difference (NEdT), solar diffuser (SD) degradation, changes in sensor responses, center wavelengths, and band-to-band registration (BBR). Also discussed in this paper are the calibration approaches and strategies developed and implemented in support of MODIS Level 1B data production and re-processing, major challenging issues, and lessons learned. (2016) COPYRIGHT Society of Photo-Optical Instrumentation Engineers (SPIE). Downloading of the abstract is permitted for personal use only.

Remote sensing of cloud, aerosol and water vapor properties from the Moderate Resolution Imaging Spectrometer (MODIS)

NASA Technical Reports Server (NTRS)

King, M. D.

1992-01-01

The Moderate Resolution Imaging Spectrometer (MODIS) is an Earth-viewing sensor being developed as a facility instrument for the Earth Observing System (EOS) to be launched in the late 1990s. MODIS consists of two separate instruments that scan a swath width sufficient to provide nearly complete global coverage every two days from a polar-orbiting, Sun-synchronous, platform at an altitude of 705 km. Of primary interest for studies of atmospheric physics is the MODIS-N (nadir) instrument which will provide images in 36 spectral bands between 0.415 and 14.235 micrometers with spatial resoulutions of 250 m (2 bands), 500 m (5 bands) and 1000 m (29 bands). These bands have been carefully selected to enable advanced studies of land, ocean and atmosperhic processes. The intent of this lecture is to describe the current status of MODIS-N and its companion instrument MODIS-T (tilt), a tiltable cross-track scanning radiometer with 32 uniformly spaced channels between 0.410 and 0.875 micrometers, and to describe the physical principles behind the development of MODIS for the remote sensing of atmospheric properties. Primary emphasis will be placed on the main atmospheric applications of determining the optical, microphysical and physical properties of clouds and aerosol particles form spectral-reflection and thermal-emission measurements. In addition to cloud and aerosol properties, MODIS-N will be utilized for the determination of the total precipitable water vapor over land and atmospheric stability. The physical principles behind the determination of each of these atmospheric products will be described herein.

Whole-exome sequencing for mutation detection in pediatric disorders of insulin secretion: Maturity onset diabetes of the young and congenital hyperinsulinism.

PubMed

Johnson, S R; Leo, P J; McInerney-Leo, A M; Anderson, L K; Marshall, M; McGown, I; Newell, F; Brown, M A; Conwell, L S; Harris, M; Duncan, E L

2018-06-01

To assess the utility of whole-exome sequencing (WES) for mutation detection in maturity-onset diabetes of the young (MODY) and congenital hyperinsulinism (CHI). MODY and CHI are the two commonest monogenic disorders of glucose-regulated insulin secretion in childhood, with 13 causative genes known for MODY and 10 causative genes identified for CHI. The large number of potential genes makes comprehensive screening using traditional methods expensive and time-consuming. Ten subjects with MODY and five with CHI with known mutations underwent WES using two different exome capture kits (Nimblegen SeqCap EZ Human v3.0 Exome Enrichment Kit, Nextera Rapid Capture Exome Kit). Analysis was blinded to previously identified mutations, and included assessment for large deletions. The target capture of five exome capture technologies was also analyzed using sequencing data from >2800 unrelated samples. Four of five MODY mutations were identified using Nimblegen (including a large deletion in HNF1B). Although targeted, one mutation (in INS) had insufficient coverage for detection. Eleven of eleven mutations (six MODY, five CHI) were identified using Nextera Rapid (including the previously missed mutation). On reconciliation, all mutations concorded with previous data and no additional variants in MODY genes were detected. There were marked differences in the performance of the capture technologies. WES can be useful for screening for MODY/CHI mutations, detecting both point mutations and large deletions. However, capture technologies require careful selection. © 2018 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

Lower Frequency of HLA-DRB1 Type 1 Diabetes Risk Alleles in Pediatric Patients with MODY.

PubMed

Urrutia, Inés; Martínez, Rosa; López-Euba, Tamara; Velayos, Teresa; Martínez de LaPiscina, Idoia; Bilbao, José Ramón; Rica, Itxaso; Castaño, Luis

2017-01-01

The aim of this study was to determine the frequency of susceptible HLA-DRB1 alleles for type 1 diabetes in a cohort of pediatric patients with a confirmed genetic diagnosis of MODY. 160 families with a proband diagnosed with type 1 diabetes and 74 families with a molecular diagnosis of MODY (61 GCK-MODY and 13 HNF1A-MODY) were categorized at high definition for HLA-DRB1 locus. According to the presence or absence of the susceptible HLA-DRB1 alleles for type 1 diabetes, we considered three different HLA-DRB1 genotypes: 0 risk alleles (no DR3 no DR4); 1 risk allele (DR3 or DR4); 2 risk alleles (DR3 and/or DR4). Compared with type 1 diabetes, patients with MODY carried higher frequency of 0 risk alleles, OR 22.7 (95% CI: 10.7-48.6) and lower frequency of 1 or 2 risk alleles, OR 0.53 (95% CI: 0.29-0.96) and OR 0.06 (95% CI: 0.02-0.18), respectively. The frequency of HLA-DRB1 risk alleles for type 1 diabetes is significantly lower in patients with MODY. In children and adolescents with diabetes, the presence of 2 risk alleles (DR3 and/or DR4) reduces the probability of MODY diagnosis, whereas the lack of risk alleles increases it. Therefore, we might consider that HLA-DRB1 provides additional information for the selection of patients with high probability of monogenic diabetes.

Application and Comparison of the MODIS-Derived Enhanced Vegetation Index to VIIRS, Landsat 5 TM and Landsat 8 OLI Platforms: A Case Study in the Arid Colorado River Delta, Mexico

PubMed Central

Jarchow, Christopher J.; Didan, Kamel; Barreto-Muñoz, Armando; Glenn, Edward P.

2018-01-01

The Enhanced Vegetation Index (EVI) is a key Earth science parameter used to assess vegetation, originally developed and calibrated for the Moderate Resolution Imaging Spectroradiometer (MODIS) aboard the Terra and Aqua satellites. With the impending decommissioning of the MODIS sensors by the year 2020/2022, alternative platforms will need to be used to estimate EVI. We compared Landsat 5 (2000–2011), 8 (2013–2016) and the Visible Infrared Imaging Radiometer Suite (VIIRS; 2013–2016) to MODIS EVI (2000–2016) over a 420,083-ha area of the arid lower Colorado River Delta in Mexico. Over large areas with mixed land cover or agricultural fields, we found high correspondence between Landsat and MODIS EVI (R2 = 0.93 for the entire area studied and 0.97 for agricultural fields), but the relationship was weak over bare soil (R2 = 0.27) and riparian vegetation (R2 = 0.48). The correlation between MODIS and Landsat EVI was higher over large, homogeneous areas and was generally lower in narrow riparian areas. VIIRS and MODIS EVI were highly similar (R2 = 0.99 for the entire area studied) and did not show the same decrease in performance in smaller, narrower regions as Landsat. Landsat and VIIRS provide EVI estimates of similar quality and characteristics to MODIS, but scale, seasonality and land cover type(s) should be considered before implementing Landsat EVI in a particular area. PMID:29757265

MODIS Snow-Cover Products

NASA Technical Reports Server (NTRS)

Hall, Dorothy K.; Riggs, George A.; Salomonson, Vincent V.; DiGirolamo, Nicole E.; Bayr, Klaus J.; Houser, Paul R. (Technical Monitor)

2002-01-01

On December 18, 1999, the Terra satellite was launched with a complement of five instruments including the Moderate Resolution Imaging Spectroradiometer (MODIS). Many geophysical products are derived from MODIS data including global snow-cover products. MODIS snow and ice products have been available through the National Snow and Ice Data Center (NSIDC) Distributed Active Archive Center (DAAC) since September 13, 2000. MODIS snow-cover products represent potential improvement to or enhancement of the currently-available operational products mainly because the MODIS products are global and 500-m resolution, and have the capability to separate most snow and clouds. Also the snow-mapping algorithms are automated which means that a consistent data set may be generated for long-term climate studies that require snow-cover information. Extensive quality assurance (QA) information is stored with the products. The MODIS snow product suite begins with a 500-m resolution, 2330-km swath snow-cover map which is then gridded to an integerized sinusoidal grid to produce daily and 8-day composite tile products. The sequence proceeds to a climate-modeling grid (CMG) product at about 5.6-km spatial resolution, with both daily and 8-day composite products. Each pixel of the CMG contains fraction of snow cover from 40 - 100%. Measured errors of commission in the CMG are low, for example, on the continent of Australia in the spring, they vary from 0.02 - 0.10%. Near-term enhancements include daily snow albedo and fractional snow cover. A case study from March 6, 2000, involving MODIS data and field and aircraft measurements, is presented to show some early validation work.

A Spatio-Temporal Approach for Global Validation and Analysis of MODIS Aerosol Products

NASA Technical Reports Server (NTRS)

Ichoku, Charles; Chu, D. Allen; Mattoo, Shana; Kaufman, Yoram J.; Remer, Lorraine A.; Tanre, Didier; Slutsker, Ilya; Holben, Brent N.; Lau, William K. M. (Technical Monitor)

2001-01-01

With the launch of the MODIS sensor on the Terra spacecraft, new data sets of the global distribution and properties of aerosol are being retrieved, and need to be validated and analyzed. A system has been put in place to generate spatial statistics (mean, standard deviation, direction and rate of spatial variation, and spatial correlation coefficient) of the MODIS aerosol parameters over more than 100 validation sites spread around the globe. Corresponding statistics are also computed from temporal subsets of AERONET-derived aerosol data. The means and standard deviations of identical parameters from MOMS and AERONET are compared. Although, their means compare favorably, their standard deviations reveal some influence of surface effects on the MODIS aerosol retrievals over land, especially at low aerosol loading. The direction and rate of spatial variation from MODIS are used to study the spatial distribution of aerosols at various locations either individually or comparatively. This paper introduces the methodology for generating and analyzing the data sets used by the two MODIS aerosol validation papers in this issue.

Moderate Resolution Imaging Spectroradiometer (MODIS) MOD21 Land Surface Temperature and Emissivity Algorithm Theoretical Basis Document

NASA Technical Reports Server (NTRS)

Hulley, G.; Malakar, N.; Hughes, T.; Islam, T.; Hook, S.

2016-01-01

This document outlines the theory and methodology for generating the Moderate Resolution Imaging Spectroradiometer (MODIS) Level-2 daily daytime and nighttime 1-km land surface temperature (LST) and emissivity product using the Temperature Emissivity Separation (TES) algorithm. The MODIS-TES (MOD21_L2) product, will include the LST and emissivity for three MODIS thermal infrared (TIR) bands 29, 31, and 32, and will be generated for data from the NASA-EOS AM and PM platforms. This is version 1.0 of the ATBD and the goal is maintain a 'living' version of this document with changes made when necessary. The current standard baseline MODIS LST products (MOD11*) are derived from the generalized split-window (SW) algorithm (Wan and Dozier 1996), which produces a 1-km LST product and two classification-based emissivities for bands 31 and 32; and a physics-based day/night algorithm (Wan and Li 1997), which produces a 5-km (C4) and 6-km (C5) LST product and emissivity for seven MODIS bands: 20, 22, 23, 29, 31-33.

Extending MODIS Deep Blue Aerosol Retrieval Coverage to Cases of Absorbing Aerosols Above Clouds: First Results

NASA Technical Reports Server (NTRS)

Sayer, A. M.; Hsu, N. C.; Bettenhausen, C.; Lee, J.; Redemann, J.; Shinozuka, Y.; Schmid, B.

2015-01-01

Absorbing smoke or mineral dust aerosols above clouds (AAC) are a frequent occurrence in certain regions and seasons. Operational aerosol retrievals from sensors like MODIS omit AAC because they are designed to work only over cloud-free scenes. However, AAC can in principle be quantified by these sensors in some situations (e.g. Jethva et al., 2013; Meyer et al., 2013). We present a summary of some analyses of the potential of MODIS-like instruments for this purpose, along with two case studies using airborne observations from the Ames Airborne Tracking Sunphotometer (AATS; http://geo.arc.nasa.gov/sgg/AATS-website/) as a validation data source for a preliminary AAC algorithm applied to MODIS measurements. AAC retrievals will eventually be added to the MODIS Deep Blue (Hsu et al., 2013) processing chain.

Simulating the effects of fire disturbance and vegetation recovery on boreal ecosystem carbon fluxes

NASA Astrophysics Data System (ADS)

Yi, Y.; Kimball, J. S.; Jones, L. A.; Zhao, M.

2011-12-01

Fire related disturbance and subsequent vegetation recovery has a major influence on carbon storage and land-atmosphere CO2 fluxes in boreal ecosystems. We applied a synthetic approach combining tower eddy covariance flux measurements, satellite remote sensing and model reanalysis surface meteorology within a terrestrial carbon model framework to estimate fire disturbance and recovery effects on boreal ecosystem carbon fluxes including gross primary production (GPP), ecosystem respiration and net CO2 exchange (NEE). A disturbance index based on MODIS land surface temperature and NDVI was found to coincide with vegetation recovery status inferred from tower chronosequence sites. An empirical algorithm was developed to track ecosystem recovery status based on the disturbance index and used to nudge modeled net primary production (NPP) and surface soil organic carbon stocks from baseline steady-state conditions. The simulations were conducted using a satellite based terrestrial carbon flux model driven by MODIS NDVI and MERRA reanalysis daily surface meteorology inputs. The MODIS (MCD45) burned area product was then applied for mapping recent (post 2000) regional disturbance history, and used with the disturbance index to define vegetation disturbance and recovery status. The model was then applied to estimate regional patterns and temporal changes in terrestrial carbon fluxes across the entire northern boreal forest and tundra domain. A sensitivity analysis was conducted to assess the relative importance of fire disturbance and recovery on regional carbon fluxes relative to assumed steady-state conditions. The explicit representation of disturbance and recovery effects produces more accurate NEE predictions than the baseline steady-state simulations and reduces uncertainty regarding the purported missing carbon sink in the high latitudes.

Monitoring interannual variation in global crop yield using long-term AVHRR and MODIS observations

NASA Astrophysics Data System (ADS)

Zhang, Xiaoyang; Zhang, Qingyuan

2016-04-01

Advanced Very High Resolution Radiometer (AVHRR) and Moderate Resolution Imaging Spectroradiometer (MODIS) data have been extensively applied for crop yield prediction because of their daily temporal resolution and a global coverage. This study investigated global crop yield using daily two band Enhanced Vegetation Index (EVI2) derived from AVHRR (1981-1999) and MODIS (2000-2013) observations at a spatial resolution of 0.05° (∼5 km). Specifically, EVI2 temporal trajectory of crop growth was simulated using a hybrid piecewise logistic model (HPLM) for individual pixels, which was used to detect crop phenological metrics. The derived crop phenology was then applied to calculate crop greenness defined as EVI2 amplitude and EVI2 integration during annual crop growing seasons, which was further aggregated for croplands in each country, respectively. The interannual variations in EVI2 amplitude and EVI2 integration were combined to correlate to the variation in cereal yield from 1982-2012 for individual countries using a stepwise regression model, respectively. The results show that the confidence level of the established regression models was higher than 90% (P value < 0.1) in most countries in the northern hemisphere although it was relatively poor in the southern hemisphere (mainly in Africa). The error in the yield predication was relatively smaller in America, Europe and East Asia than that in Africa. In the 10 countries with largest cereal production across the world, the prediction error was less than 9% during past three decades. This suggests that crop phenology-controlled greenness from coarse resolution satellite data has the capability of predicting national crop yield across the world, which could provide timely and reliable crop information for global agricultural trade and policymakers.

Total Column Water Vapor Trends from 15 Years of MODIS/NIR above the Arctic

NASA Astrophysics Data System (ADS)

OMAR, D. A.; Sarkissian, A.; Keckhut, P.; Bock, O.; Claud, C.; Irbah, A.

2016-12-01

Water vapor is defined as a major climate indicator at many occasions, highly variable spatially and temporarily, water vapor has the most important natural GHG effect, through his high infra-red absorption capacity, and temperature changes sensitivity, water vapor affects the Earth radiative budget and energy transfer, evolved at many atmospheric dynamics including the cloud formation and the aerosols composition. As a consequence to the accelerated transition towards the new climate especially above the arctic, and to investigate the feedback to the arctic amplification and the global warming, we study the water vapor variability and trends on a relatively long term above the arctic region, using the Total Column Water Vapor retrieval from MODIS/NIR spectro-radiometer on board of TERRA satellite. These 15 Years monthly daytime satellite data were compared to GPS integrated water vapor over four selected NDACC polar stations: Sodankyla-Finland, Ny-Alesund -Svalbard, Thule-Greenland, Scoresbysund-Greenland. GPS data are calculated with the temperature and pressure profile of the nearest coastal ERA-Interim station. These data were filtered for nearly coincident time to satellite over pass in order to exclude the timing effects. Errors, relative biases and RMSE at both monthly and seasonally scales will be presented and discussed. Then the MODIS 15 years linear trends and anomalies above the whole Arctic will be shown with a special focus on sea ice extent decline feed-back and hydrologic cycle connections with respect to heat waves. Results show wetter trends on the Mackenzie and mid-Siberia at September, unlike the European arctic summer which is getting drier, while Svalbard is getting wetter almost all the year. Conclusion and perspectives are also presented.

Biogeography, Cloud Base Heights and Cloud Immersion in Tropical Montane Cloud Forests

NASA Astrophysics Data System (ADS)

Welch, R. M.; Asefi, S.; Zeng, J.; Nair, U. S.; Lawton, R. O.; Ray, D. K.; Han, Q.; Manoharan, V. S.

2007-05-01

Tropical Montane Cloud Forests (TMCFs) are ecosystems characterized by frequent and prolonged immersion within orographic clouds. TMCFs often lie at the core of the biological hotspots, areas of high biodiversity, whose conservation is necessary to ensure the preservation of a significant amount of the plant and animal species in the world. TMCFs support islands of endemism dependent on cloud water interception that are extremely susceptible to environmental and climatic changes at regional or global scales. Due to the ecological and hydrological importance of TMCFs it is important to understand the biogeographical distribution of these ecosystems. The best current list of TMCFs is a global atlas compiled by the United Nations Environmental Program (UNEP). However, this list is incomplete, and it does not provide information on cloud immersion, which is the defining characteristic of TMCFs and sorely needed for ecological and hydrological studies. The present study utilizes MODIS satellite data both to determine orographic cloud base heights and then to quantify cloud immersion statistics over TMCFs. Results are validated from surface measurements over Northern Costa Rica for the month of March 2003. Cloud base heights are retrieved with approximately 80m accuracy, as determined at Monteverde, Costa Rica. Cloud immersion derived from MODIS data is also compared to an independent cloud immersion dataset created using a combination of GOES satellite data and RAMS model simulations. Comparison against known locations of cloud forests in Northern Costa Rica shows that the MODIS-derived cloud immersion maps successfully identify these cloud forest locations, including those not included in the UNEP data set. Results also will be shown for cloud immersion in Hawaii. The procedure appears to be ready for global mapping.

A novel method for characterizing harmful algal blooms in the Persian Gulf using MODIS measurements

NASA Astrophysics Data System (ADS)

Ghanea, Mohsen; Moradi, Masoud; Kabiri, Keivan

2016-10-01

Biophysical properties of water undergo meaningful variations under red tide (RT) outbreak. A massive Cochlodinium polykrikoids RT began in the eastern Persian Gulf (PG) in October 2008 and extended to the northern PG in December 2008. It killed large fish and hampered marine industries and water desalination appliances. Yet monthly averages of satellite-derived Chl-a (Chlorophyll-a), nFLH (normalized Fluorescence Line Height), and Kd490 (diffuse attenuation coefficient at 490 nm) have not been compared in the PG. MODIS (MODerate Resolution Imaging Spectroradiometer) sensor provides global coverage, with short revisit time, and accessible, well validated ocean color products. This study compares the behavior of MODIS Chl-a, nFLH, and Kd490 in both normal and RT conditions. In doing so, their color maps are shown during normal and RT periods. Then, monthly variations of these products are shown as time-series between 2002 and 2008. HOCI (Hybrid Ocean Color Index) is defined by integrating these products to detect RT affected areas. The results gained from 100 locations in the PG show that HOCI >0.18 mW cm-2 μm-1 sr-1 mg m-4 and nFLH >0.04 mW cm-2 μm-1 sr-1 discriminates non-bloom waters from algal blooms. Rrs(443)/Rrs(412) > 1 is a proper statement to separate Trichodesmium erythtraeum from Noctiluca millaris, Noctiluca scintillans, and diatoms. Rrs(667)/Rrs(443) > 1 can differentiate Cochlodinium polykrikoids from T. erythtraeum, N. millaris, N. scintillans, and diatoms as well. So, the combination of HOCI and Rrs(667)/Rrs(443) ratio is useful for detection and quantization of C. polykrikoids.

A Physically Based Algorithm for Non-Blackbody Correction of Cloud-Top Temperature and Application to Convection Study

NASA Technical Reports Server (NTRS)

Wang, Chunpeng; Lou, Zhengzhao Johnny; Chen, Xiuhong; Zeng, Xiping; Tao, Wei-Kuo; Huang, Xianglei

2014-01-01

Cloud-top temperature (CTT) is an important parameter for convective clouds and is usually different from the 11-micrometers brightness temperature due to non-blackbody effects. This paper presents an algorithm for estimating convective CTT by using simultaneous passive [Moderate Resolution Imaging Spectroradiometer (MODIS)] and active [CloudSat 1 Cloud-Aerosol Lidar and Infrared Pathfinder Satellite Observations (CALIPSO)] measurements of clouds to correct for the non-blackbody effect. To do this, a weighting function of the MODIS 11-micrometers band is explicitly calculated by feeding cloud hydrometer profiles from CloudSat and CALIPSO retrievals and temperature and humidity profiles based on ECMWF analyses into a radiation transfer model.Among 16 837 tropical deep convective clouds observed by CloudSat in 2008, the averaged effective emission level (EEL) of the 11-mm channel is located at optical depth; approximately 0.72, with a standard deviation of 0.3. The distance between the EEL and cloud-top height determined by CloudSat is shown to be related to a parameter called cloud-top fuzziness (CTF), defined as the vertical separation between 230 and 10 dBZ of CloudSat radar reflectivity. On the basis of these findings a relationship is then developed between the CTF and the difference between MODIS 11-micrometers brightness temperature and physical CTT, the latter being the non-blackbody correction of CTT. Correction of the non-blackbody effect of CTT is applied to analyze convective cloud-top buoyancy. With this correction, about 70% of the convective cores observed by CloudSat in the height range of 6-10 km have positive buoyancy near cloud top, meaning clouds are still growing vertically, although their final fate cannot be determined by snapshot observations.

Mapping paddy rice planting area in rice-wetland coexistent areas through analysis of Landsat 8 OLI and MODIS images

PubMed Central

Zhou, Yuting; Xiao, Xiangming; Qin, Yuanwei; Dong, Jinwei; Zhang, Geli; Kou, Weili; Jin, Cui; Wang, Jie; Li, Xiangping

2016-01-01

Accurate and up-to-date information on the spatial distribution of paddy rice fields is necessary for the studies of trace gas emissions, water source management, and food security. The phenology-based paddy rice mapping algorithm, which identifies the unique flooding stage of paddy rice, has been widely used. However, identification and mapping of paddy rice in rice-wetland coexistent areas is still a challenging task. In this study, we found that the flooding/transplanting periods of paddy rice and natural wetlands were different. The natural wetlands flood earlier and have a shorter duration than paddy rice in the Panjin Plain, a temperate region in China. We used this asynchronous flooding stage to extract the paddy rice planting area from the rice-wetland coexistent area. MODIS Land Surface Temperature (LST) data was used to derive the temperature-defined plant growing season. Landsat 8 OLI imagery was used to detect the flooding signal and then paddy rice was extracted using the difference in flooding stages between paddy rice and natural wetlands. The resultant paddy rice map was evaluated with in-situ ground-truth data and Google Earth images. The estimated overall accuracy and Kappa coefficient were 95% and 0.90, respectively. The spatial pattern of OLI-derived paddy rice map agrees well with the paddy rice layer from the National Land Cover Dataset from 2010 (NLCD-2010). The differences between RiceLandsat and RiceNLCD are in the range of ±20% for most 1-km grid cell. The results of this study demonstrate the potential of the phenology-based paddy rice mapping algorithm, via integrating MODIS and Landsat 8 OLI images, to map paddy rice fields in complex landscapes of paddy rice and natural wetland in the temperate region. PMID:27688742

Mapping paddy rice planting area in rice-wetland coexistent areas through analysis of Landsat 8 OLI and MODIS images.

PubMed

Zhou, Yuting; Xiao, Xiangming; Qin, Yuanwei; Dong, Jinwei; Zhang, Geli; Kou, Weili; Jin, Cui; Wang, Jie; Li, Xiangping

2016-04-01

Accurate and up-to-date information on the spatial distribution of paddy rice fields is necessary for the studies of trace gas emissions, water source management, and food security. The phenology-based paddy rice mapping algorithm, which identifies the unique flooding stage of paddy rice, has been widely used. However, identification and mapping of paddy rice in rice-wetland coexistent areas is still a challenging task. In this study, we found that the flooding/transplanting periods of paddy rice and natural wetlands were different. The natural wetlands flood earlier and have a shorter duration than paddy rice in the Panjin Plain, a temperate region in China. We used this asynchronous flooding stage to extract the paddy rice planting area from the rice-wetland coexistent area. MODIS Land Surface Temperature (LST) data was used to derive the temperature-defined plant growing season. Landsat 8 OLI imagery was used to detect the flooding signal and then paddy rice was extracted using the difference in flooding stages between paddy rice and natural wetlands. The resultant paddy rice map was evaluated with in-situ ground-truth data and Google Earth images. The estimated overall accuracy and Kappa coefficient were 95% and 0.90, respectively. The spatial pattern of OLI-derived paddy rice map agrees well with the paddy rice layer from the National Land Cover Dataset from 2010 (NLCD-2010). The differences between Rice Landsat and Rice NLCD are in the range of ±20% for most 1-km grid cell. The results of this study demonstrate the potential of the phenology-based paddy rice mapping algorithm, via integrating MODIS and Landsat 8 OLI images, to map paddy rice fields in complex landscapes of paddy rice and natural wetland in the temperate region.

Understanding the relationship between vegetation phenology and productivity across key dryland ecosystem types through the integration of PhenoCam, satellite, and eddy covariance data

NASA Astrophysics Data System (ADS)

Yan, D.; Scott, R. L.; Moore, D. J.; Biederman, J. A.; Smith, W. K.

2017-12-01

Land surface phenology (LSP) - defined as remotely sensed seasonal variations in vegetation greenness - is intrinsically linked to seasonal carbon uptake, and is thus commonly used as a proxy for vegetation productivity (gross primary productivity; GPP). Yet, the relationship between LSP and GPP remains uncertain, particularly for understudied dryland ecosystems characterized by relatively large spatial and temporal variability. Here, we explored the relationship between LSP and the phenology of GPP for three dominant dryland ecosystem types, and we evaluated how these relationships change as a function of spatial and temporal scale. We focused on three long-term dryland eddy covariance flux tower sites: Walnut Gulch Lucky Hills Shrubland (WHS), Walnut Gulch Kendall Grassland (WKG), and Santa Rita Mesquite (SRM). We analyzed daily canopy-level, 16-day 30m, and 8-day 500m time series of greenness indices from PhenoCam, Landsat 7 ETM+/Landsat 8 OLI, and MODIS, respectively. We first quantified the impact of spatial scale by temporally resampling canopy-level PhenoCam, 30m Landsat, and 500m MODIS to 16-day intervals and then comparing against flux tower GPP estimates. We next quantified the impact of temporal scale by spatially resampling daily PhenoCam, 16-day Landsat, and 8-day MODIS to 500m time series and then comparing against flux tower GPP estimates. We find evidence of critical periods of decoupling between LSP and the phenology of GPP that vary according to the spatial and temporal scale, and as a function of ecosystem type. Our results provide key insight into dryland LSP and GPP dynamics that can be used in future efforts to improve ecosystem process models and satellite-based vegetation productivity algorithms.

Evaluation and sensitivity testing of a coupled Landsat-MODIS downscaling method for land surface temperature and vegetation indices in semi-arid regions

NASA Astrophysics Data System (ADS)

Kim, Jongyoun; Hogue, Terri S.

2012-01-01

The current study investigates a method to provide land surface parameters [i.e., land surface temperature (LST) and normalized difference vegetation index (NDVI)] at a high spatial (˜30 and 60 m) and temporal (daily and 8-day) resolution by combining advantages from Landsat and moderate-resolution imaging spectroradiometer (MODIS) satellites. We adopt a previously developed subtraction method that merges the spatial detail of higher-resolution imagery (Landsat) with the temporal change observed in coarser or moderate-resolution imagery (MODIS). Applying the temporal difference between MODIS images observed at two different dates to a higher-resolution Landsat image allows prediction of a combined or fused image (Landsat+MODIS) at a future date. Evaluation of the resultant merged products is undertaken within the Southeastern Arizona region where data is available from a range of flux tower sites. The Landsat+MODIS fused products capture the raw Landsat values and also reflect the MODIS temporal variation. The predicted Landsat+MODIS LST improves mean absolute error around 5°C at the more heterogeneous sites compared to the original satellite products. The fused Landsat+MODIS NDVI product also shows good correlation to ground-based data and is relatively consistent except during the acute (monsoon) growing season. The sensitivity of the fused product relative to temporal gaps in Landsat data appears to be more affected by uncertainty associated with regional precipitation and green-up, than the length of the gap associated with Landsat viewing, suggesting the potential to use a minimal number of original Landsat images during relatively stable land surface and climate conditions. Our extensive validation yields insight on the ability of the proposed method to integrate multiscale platforms and the potential for reducing costs associated with high-resolution satellite systems (e.g., SPOT, QuickBird, IKONOS).

Multitemporal cross-calibration of the Terra MODIS and Landsat 7 ETM+ reflective solar bands

USGS Publications Warehouse

Angal, Amit; Xiong, Xiaoxiong; Wu, Aisheng; Chander, Gyanesh; Choi, Taeyoung

2013-01-01

In recent years, there has been a significant increase in the use of remotely sensed data to address global issues. With the open data policy, the data from the Moderate Resolution Imaging Spectroradiometer (MODIS) and Enhanced Thematic Mapper Plus (ETM+) sensors have become a critical component of numerous applications. These two sensors have been operational for more than a decade, providing a rich archive of multispectral imagery for analysis of mutitemporal remote sensing data. This paper focuses on evaluating the radiometric calibration agreement between MODIS and ETM+ using the near-simultaneous and cloud-free image pairs over an African pseudo-invariant calibration site, Libya 4. To account for the combined uncertainties in the top-of-atmosphere (TOA) reflectance due to surface and atmospheric bidirectional reflectance distribution function (BRDF), a semiempirical BRDF model was adopted to normalize the TOA reflectance to the same illumination and viewing geometry. In addition, the spectra from the Earth Observing-1 (EO-1) Hyperion were used to compute spectral corrections between the corresponding MODIS and ETM+ spectral bands. As EO-1 Hyperion scenes were not available for all MODIS and ETM+ data pairs, MODerate resolution atmospheric TRANsmission (MODTRAN) 5.0 simulations were also used to adjust for differences due to the presence or lack of absorption features in some of the bands. A MODIS split-window algorithm provides the atmospheric water vapor column abundance during the overpasses for the MODTRAN simulations. Additionally, the column atmospheric water vapor content during the overpass was retrieved using the MODIS precipitable water vapor product. After performing these adjustments, the radiometric cross-calibration of the two sensors was consistent to within 7%. Some drifts in the response of the bands are evident, with MODIS band 3 being the largest of about 6% over 10 years, a change that will be corrected in Collection 6 MODIS processing.

Using multi-source satellite data to assess snow-cover change in Qinghai-Tibetan Plateau in last decade

NASA Astrophysics Data System (ADS)

Jiang, Y.; Chen, F.; Gao, Y.; Barlage, M. J.

2017-12-01

Snow cover in Qinghai-Tibetan Plateau (QTP) is a critical component of water cycle and affects regional climate of East Asia. Satellite data from three different sources (i.e., FY3A/B/C, MODIS and IMS) were used to analyze the QTP fractional-snow-cover (FSC) change and associated uncertainties in the last decade. To reduce the high percentage of cloud in FY3A/B/C and MODIS, a four-step cloud removal procedure was applied and effectively reduced the cloud percentage from 40.8-56.1% to 2.2­-­3.3%. The averaged error introduced by the cloud removal procedure was about 2% estimated by a random sampling method. Results show that the snow cover in QTP significantly decreased in recent 5 years. Three data sets (FY3B, MODIS and IMS) showed significant decreased annual FSC at all elevation bands from 2012-2016, and a significant shorter snow season with delayed snow onset and earlier melting. Both IMS and MODIS had a slightly decline annual FSC from 2000 to 3000 m, while MODIS FSC slightly decreased in 2002-2016 and IMS FSC slightly increased from 2006-2016 in the region with elevation higher than 3000 m. Results also show significant uncertainties among the five data sets (FY3A/B/C, MODIS, IMS), although they showed similar fluctuations of daily FSC. IMS had largest snow-cover extent and highest daily FSC due to its multi data sources. FY3A/C and MODIS (observed in the morning) had around 5% higher mean FSC than FY3B (observed in the afternoon) due to the 3 hours detection time gap. The relative error of daily FSC (taking MODIS as `truth') between FY3A/B/C, IMS and MODIS is 23%, -35%, 8% and 63%, respectively, averaged in five elevation bands in 2015-2017.

Multitemporal Cross-Calibration of the Terra MODIS and Landsat 7 ETM+ Reflective Solar Bands

NASA Technical Reports Server (NTRS)

Angal, Amit; Xiong, Xiaoxiong; Wu, Aisheng; Changler, Gyanesh; Choi, Taeyoyung

2013-01-01

In recent years, there has been a significant increase in the use of remotely sensed data to address global issues. With the open data policy, the data from the Moderate Resolution Imaging Spectroradiometer (MODIS) and Enhanced Thematic Mapper Plus (ETM+) sensors have become a critical component of numerous applications. These two sensors have been operational for more than a decade, providing a rich archive of multispectral imagery for analysis of mutitemporal remote sensing data. This paper focuses on evaluating the radiometric calibration agreement between MODIS and ETM+ using the near-simultaneous and cloud-free image pairs over an African pseudo-invariant calibration site, Libya 4. To account for the combined uncertainties in the top-of-atmosphere (TOA) reflectance due to surface and atmospheric bidirectional reflectance distribution function (BRDF), a semiempirical BRDF model was adopted to normalize the TOA reflectance to the same illumination and viewing geometry. In addition, the spectra from the Earth Observing-1 (EO-1) Hyperion were used to compute spectral corrections between the corresponding MODIS and ETM+ spectral bands. As EO-1 Hyperion scenes were not available for all MODIS and ETM+ data pairs, MODerate resolution atmospheric TRANsmission (MODTRAN) 5.0 simulations were also used to adjust for differences due to the presence or lack of absorption features in some of the bands. A MODIS split-window algorithm provides the atmospheric water vapor column abundance during the overpasses for the MODTRAN simulations. Additionally, the column atmospheric water vapor content during the overpass was retrieved using the MODIS precipitable water vapor product. After performing these adjustments, the radiometric cross-calibration of the two sensors was consistent to within 7%. Some drifts in the response of the bands are evident, with MODIS band 3 being the largest of about 6% over 10 years, a change that will be corrected in Collection 6 MODIS processing.

Cross-calibration of the Oceansat-2 Ocean Colour Monitor (OCM) with Terra and Aqua MODIS

NASA Astrophysics Data System (ADS)

Angal, Amit; Brinkmann, Jake; Kumar, A. Senthil; Xiong, Xiaoxiong

2016-05-01

The Ocean Colour Monitor (OCM) sensor on-board the Oceansat-2 spacecraft has been operational since its launch in September, 2009. The Oceansat 2 OCM primary design goal is to provide continuity to Oceansat-1 OCM to obtain information regarding various ocean-colour variables. OCM acquires Earth scene measurements in eight multi-spectral bands in the range from 402 to 885 nm. The MODIS sensor on the Terra and Aqua spacecraft has been successfully operating for over a decade collecting measurements of the earth's land, ocean surface and atmosphere. The MODIS spectral bands, designed for land and ocean applications, cover the spectral range from 412 to 869 nm. This study focuses on comparing the radiometric calibration stability of OCM using near-simultaneous TOA measurements with Terra and Aqua MODIS acquired over the Libya 4 target. Same-day scene-pairs from all three sensors (OCM, Terra and Aqua MODIS) between August, 2014 and September, 2015 were chosen for this analysis. On a given day, the OCM overpass is approximately an hour after the Terra overpass and an hour before the Aqua overpass. Due to the orbital differences between Terra and Aqua, MODIS images the Libya 4 site at different scan-angles on a given day. Some of the high-gain ocean bands for MODIS tend to saturate while viewing the bright Libya 4 target, but bands 8-10 (412 nm - 486 nm) provide an unsaturated response and are used for comparison with the spectrally similar OCM bands. All the standard corrections such as bidirectional reflectance factor (BRDF), relative spectral response mismatch, and impact for atmospheric water-vapor are applied to obtain the reflectance differences between OCM and the two MODIS instruments. Furthermore, OCM is used as a transfer radiometer to obtain the calibration differences between Terra and Aqua MODIS reflective solar bands.

Low Frequencies of Autoimmunity-Associated PTPN22 Polymorphisms in MODY Patients, Including Those Transiently Expressing Islet Cell Autoantibodies.

PubMed

Heneberg, Petr; Malá, Milena; Yorifuji, Tohru; Gat-Yablonski, Galia; Lebenthal, Yael; Tajima, Toshihiro; Nogaroto, Viviane; Rypáčková, Blanka; Kocková, Lucie; Urbanová, Jana; Anděl, Michal

2015-01-01

The protein tyrosine phosphatase nonreceptor type 22 (PTPN22) gene encodes lymphoid tyrosine phosphatase (LYP), which is expressed primarily in lymphoid tissues. The functional but geographically highly variable PTPN22 single-nucleotide polymorphisms (SNPs), particularly c.1858C>T, contribute to the onset and progression of autoimmunity-associated diseases and facilitate the expression of disease-associated autoantibodies. In Central Europe, 17-25% of patients with monogenic diabetes (maturity-onset diabetes of the young, MODY) transiently express islet cell autoantibodies. We addressed the links between the functional and geographically variable PTPN22 SNPs with MODY manifestation and the expression of islet cell autoantibodies in 276 MODY patients who originated from four regions (the Czech Republic, Israel, Japan and Brazil). The frequency of PTPN22 polymorphisms in the MODY patients was similar to those in geographically matched healthy populations, with the exception of c.788G>A, the minor allele frequency of which was significantly elevated in the Czech hepatocyte nuclear factor 1-α (HNF1A) MODY patients [odds ratio (OR) 4.8, 95% confidence interval (CI) 2.2-10.7] and the Brazilian MODY patients (OR 8.4, 95% CI 1.8-39.1). A barely significant increase in the c.788G>A minor allele was also detected in the islet cell autoantibody-positive Czech MODY patients. However, c.788A behaves as a loss-of-function mutant in T cells, and thus protects against autoimmunity. MODY patients (including islet cell autoantibody-positive cases) do not display any increase in autoimmunity-associated PTPN22 alleles. The absence of autoimmunity-associated PTPN22 alleles was also demonstrated in latent autoimmune diabetes in adults, which suggests that the slow kinetics of the onset of autoantibodies is subject to a regulation that is different from that experienced in type 1 diabetes and other autoimmune disorders. © 2015 S. Karger AG, Basel.

Cross-Calibration of the Oceansat-2 Ocean Colour Monitor (OCM) with Terra and Aqua MODIS

NASA Technical Reports Server (NTRS)

Angal, Amit; Brinkmann, Jake; Kumar, A. Senthil; Xiong, Xiaoxiong

2016-01-01

The Ocean Colour Monitor (OCM) sensor on-board the Oceansat-2 spacecraft has been operational since its launch in September, 2009. The Oceansat 2 OCM primary design goal is to provide continuity to Oceansat-1 OCM to obtain information regarding various ocean-colour variables. OCM acquires Earth scene measurements in eight multi-spectral bands in the range from 402 to 885 nm. The MODIS sensor on the Terra and Aqua spacecraft has been successfully operating for over a decade collecting measurements of the earth's land, ocean surface and atmosphere. The MODIS spectral bands, designed for land and ocean applications, cover the spectral range from 412 to 869 nm. This study focuses on comparing the radiometric calibration stability of OCM using near-simultaneous TOA measurements with Terra and Aqua MODIS acquired over the Libya 4 target. Same-day scene-pairs from all three sensors (OCM, Terra and Aqua MODIS) between August, 2014 and September, 2015 were chosen for this analysis. On a given day, the OCM overpass is approximately an hour after the Terra overpass and an hour before the Aqua overpass. Due to the orbital differences between Terra and Aqua, MODIS images the Libya 4 site at different scan-angles on a given day. Some of the high-gain ocean bands for MODIS tend to saturate while viewing the bright Libya 4 target, but bands 8-10 (412 nm - 486 nm) provide an unsaturated response and are used for comparison with the spectrally similar OCM bands. All the standard corrections such as bidirectional reflectance factor (BRDF), relative spectral response mismatch, and impact for atmospheric water-vapor are applied to obtain the reflectance differences between OCM and the two MODIS instruments. Furthermore, OCM is used as a transfer radiometer to obtain the calibration differences between Terra and Aqua MODIS reflective solar bands.

Impact of MODIS SWIR Band Calibration Improvements on Level-3 Atmospheric Products

NASA Technical Reports Server (NTRS)

Wald, Andrew; Levy, Robert; Angal, Amit; Geng, Xu; Xiong, Jack; Hoffman, Kurt

2016-01-01

The spectral reflectance measured by the MODIS reflective solar bands (RSB) is used for retrieving many atmospheric science products. The accuracy of these products depends on the accuracy of the calibration of the RSB. To this end, the RSB of the MODIS instruments are primarily calibrated on-orbit using regular solar diffuser (SD) observations. For lambda < 0.94 microns the SDs on-orbit bi-directional reflectance factor (BRF) change is tracked using solar diffuser stability monitor (SDSM) observations. For lambda > 0.94 microns, the MODIS Characterization Support Team (MCST) developed, in MODIS Collection 6 (C6), a time-dependent correction using observations from pseudo-invariant earth-scene targets. This correction has been implemented in C6 for the Terra MODIS 1.24 micron band over the entire mission, and for the 1.375 micron band in the forward processing. As the instruments continue to operate beyond their design lifetime of six years, a similar correction is planned for other short-wave infrared (SWIR) bands as well. MODIS SWIR bands are used in deriving atmosphere products, including aerosol optical thickness, atmospheric total column water vapor, cloud fraction and cloud optical depth. The SD degradation correction in Terra bands 5 and 26 impact the spectral radiance and therefore the retrieval of these atmosphere products. Here, we describe the corrections to Bands 5 (1.24 microns) and 26 (1.375 microns), and produce three sets (B5, B26 correction on/on, on/off, and off/off) of Terra-MODIS Level 1B (calibrated radiance product) data. By comparing products derived from these corrected and uncorrected Terra MODIS Level 1B (L1B) calibrations, dozens of L3 atmosphere products are surveyed for changes caused by the corrections, and representative results are presented. Aerosol and water vapor products show only small local changes, while some cloud products can change locally by > 10%, which is a large change.

The Radiative Consistency of Atmospheric Infrared Sounder and Moderate Resolution Imaging Spectroradiometer Cloud Retrievals

NASA Technical Reports Server (NTRS)

Kahn, Brian H.; Fishbein, Evan; Nasiri, Shaima L.; Eldering, Annmarie; Fetzer, Eric J.; Garay, Michael J.; Lee, Sung-Yung

2007-01-01

The consistency of cloud top temperature (Tc) and effective cloud fraction (f) retrieved by the Atmospheric Infrared Sounder (AIRS)/Advanced Microwave Sounding Unit (AMSU) observation suite and the Moderate Resolution Imaging Spectroradiometer (MODIS) on the EOS-Aqua platform are investigated. Collocated AIRS and MODIS TC and f are compared via an 'effective scene brightness temperature' (Tb,e). Tb,e is calculated with partial field of view (FOV) contributions from TC and surface temperature (TS), weighted by f and 1-f, respectively. AIRS reports up to two cloud layers while MODIS reports up to one. However, MODIS reports TC, TS, and f at a higher spatial resolution than AIRS. As a result, pixel-scale comparisons of TC and f are difficult to interpret, demonstrating the need for alternatives such as Tb,e. AIRS-MODIS Tb,e differences ((Delta)Tb,e) for identical observing scenes are useful as a diagnostic for cloud quantity comparisons. The smallest values of DTb,e are for high and opaque clouds, with increasing scatter in (Delta)Tb,e for clouds of smaller opacity and lower altitude. A persistent positive bias in DTb,e is observed in warmer and low-latitude scenes, characterized by a mixture of MODIS CO2 slicing and 11-mm window retrievals. These scenes contain heterogeneous cloud cover, including mixtures of multilayered cloudiness and misplaced MODIS cloud top pressure. The spatial patterns of (Delta)Tb,e are systematic and do not correlate well with collocated AIRS-MODIS radiance differences, which are more random in nature and smaller in magnitude than (Delta)Tb,e. This suggests that the observed inconsistencies in AIRS and MODIS cloud fields are dominated by retrieval algorithm differences, instead of differences in the observed radiances. The results presented here have implications for the validation of cloudy satellite retrieval algorithms, and use of cloud products in quantitative analyses.

NLCD - MODIS albedo data

EPA Pesticide Factsheets

The NLCD-MODIS land cover-albedo database integrates high-quality MODIS albedo observations with areas of homogeneous land cover from NLCD. The spatial resolution (pixel size) of the database is 480m-x-480m aligned to the standardized UGSG Albers Equal-Area projection. The spatial extent of the database is the continental United States. This dataset is associated with the following publication:Wickham , J., C.A. Barnes, and T. Wade. Combining NLCD and MODIS to Create a Land Cover-Albedo Dataset for the Continental United States. REMOTE SENSING OF ENVIRONMENT. Elsevier Science Ltd, New York, NY, USA, 170(0): 143-153, (2015).

A Generic Approach for Inversion of Surface Reflectance over Land: Overview, Application and Validation Using MODIS and LANDSAT8 Data

NASA Technical Reports Server (NTRS)

Vermote, E.; Roger, J. C.; Justice, C. O.; Franch, B.; Claverie, M.

2016-01-01

This paper presents a generic approach developed to derive surface reflectance over land from a variety of sensors. This technique builds on the extensive dataset acquired by the Terra platform by combining MODIS and MISR to derive an explicit and dynamic map of band ratio's between blue and red channels and is a refinement of the operational approach used for MODIS and LANDSAT over the past 15 years. We will present the generic approach and the application to MODIS and LANDSAT data and its validation using the AERONET data.

Clouds off the Aleutian Islands

NASA Image and Video Library

2017-12-08

March 23, 2010 - Clouds off the Aleutian Islands Interesting cloud patterns were visible over the Aleutian Islands in this image, captured by the MODIS on the Aqua satellite on March 14, 2010. Turbulence, caused by the wind passing over the highest points of the islands, is producing the pronounced eddies that swirl the clouds into a pattern called a vortex "street". In this image, the clouds have also aligned in parallel rows or streets. Cloud streets form when low-level winds move between and over obstacles causing the clouds to line up into rows (much like streets) that match the direction of the winds. At the point where the clouds first form streets, they're very narrow and well-defined. But as they age, they lose their definition, and begin to spread out and rejoin each other into a larger cloud mass. The Aleutians are a chain of islands that extend from Alaska toward the Kamchatka Peninsula in Russia. For more information related to this image go to: modis.gsfc.nasa.gov/gallery/individual.php?db_date=2010-0... For more information about Goddard Space Flight Center go here: www.nasa.gov/centers/goddard/home/index.html

Time-Dependent Response Versus Scan Angle for MODIS Reflective Solar Bands

NASA Technical Reports Server (NTRS)

Sun, Junqiang; Xiong, Xiaoxiong; Angal, Amit; Chen, Hongda; Wu, Aisheng; Geng, Xu

2014-01-01

The Moderate Resolution Imaging Spectroradiometer (MODIS) instruments currently operate onboard the National Aeronautics and Space Administration (NASA's) Terra and Aqua spacecraft, launched on December 18, 1999 and May 4, 2002, respectively. MODIS has 36 spectral bands, among which 20 are reflective solar bands (RSBs) covering a spectral range from 0.412 to 2.13 µm. The RSBs are calibrated on orbit using a solar diffuser (SD) and an SD stability monitor and with additional measurements from lunar observations via a space view (SV) port. Selected pseudo-invariant desert sites are also used to track the RSB on-orbit gain change, particularly for short-wavelength bands. MODIS views the Earth surface, SV, and the onboard calibrators using a two-sided scan mirror. The response versus scan angle (RVS) of the scan mirror was characterized prior to launch, and its changes are tracked using observations made at different angles of incidence from onboard SD, lunar, and Earth view (EV) measurements. These observations show that the optical properties of the scan mirror have experienced large wavelength-dependent degradation in both the visible and near infrared spectral regions. Algorithms have been developed to track the on-orbit RVS change using the calibrators and the selected desert sites. These algorithms have been applied to both Terra and Aqua MODIS Level 1B (L1B) to improve the EV data accuracy since L1B Collection 4, refined in Collection 5, and further improved in the latest Collection 6 (C6). In C6, two approaches have been used to derive the time-dependent RVS for MODIS RSB. The first approach relies on data collected from sensor onboard calibrators and mirror side ratios from EV observations. The second approach uses onboard calibrators and EV response trending from selected desert sites. This approach is mainly used for the bands with much larger changes in their time-dependent RVS, such as the Terra MODIS bands 1-4, 8, and 9 and the Aqua MODIS bands 8- and 9. In this paper, the algorithms of these approaches are described, their performance is demonstrated, and their impact on L1B products is discussed. In general, the shorter wavelength bands have experienced a larger on-orbit RVS change, which, in general, are mirror side and detector dependent. The on-orbit RVS change due to the degradation of band 8 can be as large as 35 percent for Terra MODIS and 20 percent for Aqua MODIS. Vital to maintaining the accuracy of the MODIS L1B products is an accurate characterization of the on-orbit RVS change. The derived time-independent RVS, implemented in C6, makes an important improvement to the quality of the MODIS L1B products.

Assessments and Applications of Terra and Aqua MODIS On-Orbit Electronic Calibration

NASA Technical Reports Server (NTRS)

Xiong, Xiaoxiong; Chen, Na; Li, Yonghong; Wilson, Truman

2016-01-01

MODIS has 36 spectral bands located on four focal plane assemblies (FPAs), covering wavelengths from 0.41 to 14.4 micrometers. MODIS bands 1-30 collect data using photovoltaic (PV) detectors and, therefore, are referred to as the PV bands. Similarly, bands 31-36 using photoconductive (PC) detectors are referred to as the PC bands.The MODIS instrument was built with a set of on-board calibrators (OBCs) in order to track on-orbit changes of its radiometric, spatial, and spectral characteristics. In addition, an electronic calibration (ECAL) function can be used to monitor on-orbit changes of its electronic responses (gains). This is accomplished via a series of stair step signals generated by the ECAL function. These signals, in place of the FPA detector signals, are amplified and digitized just like the detector signals. Over the entire mission of both Terra and Aqua MODIS,the ECAL has been performed for the PV bands and used to assess their on-orbit performance. This paper provides an overview of MODIS on-orbit calibration activities with a focus on the PV ECAL, including its calibration process and approaches used to monitor the electronic performance. It presents the results derived and lessons learned from Terra and Aqua MODIS on-orbit ECAL. Also discussed are some of the applications performed with the information provided by the ECAL data.

Downscaling 250-m MODIS growing season NDVI based on multiple-date landsat images and data mining approaches

USGS Publications Warehouse

Gu, Yingxin; Wylie, Bruce K.

2015-01-01

The satellite-derived growing season time-integrated Normalized Difference Vegetation Index (GSN) has been used as a proxy for vegetation biomass productivity. The 250-m GSN data estimated from the Moderate Resolution Imaging Spectroradiometer (MODIS) sensors have been used for terrestrial ecosystem modeling and monitoring. High temporal resolution with a wide range of wavelengths make the MODIS land surface products robust and reliable. The long-term 30-m Landsat data provide spatial detailed information for characterizing human-scale processes and have been used for land cover and land change studies. The main goal of this study is to combine 250-m MODIS GSN and 30-m Landsat observations to generate a quality-improved high spatial resolution (30-m) GSN database. A rule-based piecewise regression GSN model based on MODIS and Landsat data was developed. Results show a strong correlation between predicted GSN and actual GSN (r = 0.97, average error = 0.026). The most important Landsat variables in the GSN model are Normalized Difference Vegetation Indices (NDVIs) in May and August. The derived MODIS-Landsat-based 30-m GSN map provides biophysical information for moderate-scale ecological features. This multiple sensor study retains the detailed seasonal dynamic information captured by MODIS and leverages the high-resolution information from Landsat, which will be useful for regional ecosystem studies.

Retrieval of ice cloud properties using an optimal estimation algorithm and MODIS infrared observations. Part I: Forward model, error analysis, and information content

PubMed Central

Wang, Chenxi; Platnick, Steven; Zhang, Zhibo; Meyer, Kerry; Yang, Ping

2018-01-01

An optimal estimation (OE) retrieval method is developed to infer three ice cloud properties simultaneously: optical thickness (τ), effective radius (reff), and cloud-top height (h). This method is based on a fast radiative transfer (RT) model and infrared (IR) observations from the MODerate resolution Imaging Spectroradiometer (MODIS). This study conducts thorough error and information content analyses to understand the error propagation and performance of retrievals from various MODIS band combinations under different cloud/atmosphere states. Specifically, the algorithm takes into account four error sources: measurement uncertainty, fast RT model uncertainty, uncertainties in ancillary datasets (e.g., atmospheric state), and assumed ice crystal habit uncertainties. It is found that the ancillary and ice crystal habit error sources dominate the MODIS IR retrieval uncertainty and cannot be ignored. The information content analysis shows that, for a given ice cloud, the use of four MODIS IR observations is sufficient to retrieve the three cloud properties. However, the selection of MODIS IR bands that provide the most information and their order of importance varies with both the ice cloud properties and the ambient atmospheric and the surface states. As a result, this study suggests the inclusion of all MODIS IR bands in practice since little a priori information is available. PMID:29707470

Retrieval of Ice Cloud Properties Using an Optimal Estimation Algorithm and MODIS Infrared Observations. Part I: Forward Model, Error Analysis, and Information Content

NASA Technical Reports Server (NTRS)

Wang, Chenxi; Platnick, Steven; Zhang, Zhibo; Meyer, Kerry; Yang, Ping

2016-01-01

An optimal estimation (OE) retrieval method is developed to infer three ice cloud properties simultaneously: optical thickness (tau), effective radius (r(sub eff)), and cloud-top height (h). This method is based on a fast radiative transfer (RT) model and infrared (IR) observations from the MODerate resolution Imaging Spectroradiometer (MODIS). This study conducts thorough error and information content analyses to understand the error propagation and performance of retrievals from various MODIS band combinations under different cloud/atmosphere states. Specifically, the algorithm takes into account four error sources: measurement uncertainty, fast RT model uncertainty, uncertainties in ancillary datasets (e.g., atmospheric state), and assumed ice crystal habit uncertainties. It is found that the ancillary and ice crystal habit error sources dominate the MODIS IR retrieval uncertainty and cannot be ignored. The information content analysis shows that, for a given ice cloud, the use of four MODIS IR observations is sufficient to retrieve the three cloud properties. However, the selection of MODIS IR bands that provide the most information and their order of importance varies with both the ice cloud properties and the ambient atmospheric and the surface states. As a result, this study suggests the inclusion of all MODIS IR bands in practice since little a priori information is available.

Retrieval of Ice Cloud Properties Using an Optimal Estimation Algorithm and MODIS Infrared Observations. Part I: Forward Model, Error Analysis, and Information Content

NASA Technical Reports Server (NTRS)

Wang, Chenxi; Platnick, Steven; Zhang, Zhibo; Meyer, Kerry; Yang, Ping

2016-01-01

An optimal estimation (OE) retrieval method is developed to infer three ice cloud properties simultaneously: optical thickness (tau), effective radius (r(sub eff)), and cloud top height (h). This method is based on a fast radiative transfer (RT) model and infrared (IR) observations from the MODerate resolution Imaging Spectroradiometer (MODIS). This study conducts thorough error and information content analyses to understand the error propagation and performance of retrievals from various MODIS band combinations under different cloud/atmosphere states. Specifically, the algorithm takes into account four error sources: measurement uncertainty, fast RT model uncertainty, uncertainties in ancillary data sets (e.g., atmospheric state), and assumed ice crystal habit uncertainties. It is found that the ancillary and ice crystal habit error sources dominate the MODIS IR retrieval uncertainty and cannot be ignored. The information content analysis shows that for a given ice cloud, the use of four MODIS IR observations is sufficient to retrieve the three cloud properties. However, the selection of MODIS IR bands that provide the most information and their order of importance varies with both the ice cloud properties and the ambient atmospheric and the surface states. As a result, this study suggests the inclusion of all MODIS IR bands in practice since little a priori information is available.

Identification of Candidate Gene Variants in Korean MODY Families by Whole-Exome Sequencing.

PubMed

Shim, Ye Jee; Kim, Jung Eun; Hwang, Su-Kyeong; Choi, Bong Seok; Choi, Byung Ho; Cho, Eun-Mi; Jang, Kyoung Mi; Ko, Cheol Woo

2015-01-01

To date, 13 genes causing maturity-onset diabetes of the young (MODY) have been identified. However, there is a big discrepancy in the genetic locus between Asian and Caucasian patients with MODY. Thus, we conducted whole-exome sequencing in Korean MODY families to identify causative gene variants. Six MODY probands and their family members were included. Variants in the dbSNP135 and TIARA databases for Koreans and the variants with minor allele frequencies >0.5% of the 1000 Genomes database were excluded. We selected only the functional variants (gain of stop codon, frameshifts and nonsynonymous single-nucleotide variants) and conducted a case-control comparison in the family members. The selected variants were scanned for the previously introduced gene set implicated in glucose metabolism. Three variants c.620C>T:p.Thr207Ile in PTPRD, c.559C>G:p.Gln187Glu in SYT9, and c.1526T>G:p.Val509Gly in WFS1 were respectively identified in 3 families. We could not find any disease-causative alleles of known MODY 1-13 genes. Based on the predictive program, Thr207Ile in PTPRD was considered pathogenic. Whole-exome sequencing is a valuable method for the genetic diagnosis of MODY. Further evaluation is necessary about the role of PTPRD, SYT9 and WFS1 in normal insulin release from pancreatic beta cells. © 2015 S. Karger AG, Basel.

A Satellite-Derived Climate-Quality Data Record of the Clear-Sky Surface Temperature of the Greenland Ice Sheet

NASA Technical Reports Server (NTRS)

Hall, Dorothy K.; Comiso, Josefino C.; DiGirolamo, Nikolo E.; Shuman, Christopher A.; Key, Jeffrey R.; Koenig, Lora S.

2012-01-01

We have developed a climate-quality data record of the clear-sky surface temperature of the Greenland Ice Sheet using the Moderate-Resolution Imaging Spectroradiometer (MODIS) ice-surface temperature (1ST) algorithm. A climate-data record (CDR) is a time series of measurements of sufficient length, consistency, and continuity to determine climate variability and change. We present daily and monthly MODIS ISTs of the Greenland Ice Sheet beginning on 1 March 2000 and continuing through 31 December 2010 at 6.25-km spatial resolution on a polar stereographic grid. This record will be elevated in status to a CDR when at least nine more years of data become available either from MODIS Terra or Aqua, or from the Visible Infrared Imager Radiometer Suite (VIIRS) to be launched in October 2011. Our ultimate goal is to develop a CDR that starts in 1981 with the Advanced Very High Resolution (AVHRR) Polar Pathfinder (APP) dataset and continues with MODIS data from 2000 to the present, and into the VIIRS era. Differences in the APP and MODIS cloud masks have so far precluded the current 1ST records from spanning both the APP and MODIS time series in a seamless manner though this will be revisited when the APP dataset has been reprocessed. The complete MODIS 1ST daily and monthly data record is available online.

Fusing MODIS with Landsat 8 data to downscale weekly normalized difference vegetation index estimates for central Great Basin rangelands, USA

USGS Publications Warehouse

Boyte, Stephen; Wylie, Bruce K.; Rigge, Matthew B.; Dahal, Devendra

2018-01-01

Data fused from distinct but complementary satellite sensors mitigate tradeoffs that researchers make when selecting between spatial and temporal resolutions of remotely sensed data. We integrated data from the Moderate Resolution Imaging Spectroradiometer (MODIS) sensor aboard the Terra satellite and the Operational Land Imager sensor aboard the Landsat 8 satellite into four regression-tree models and applied those data to a mapping application. This application produced downscaled maps that utilize the 30-m spatial resolution of Landsat in conjunction with daily acquisitions of MODIS normalized difference vegetation index (NDVI) that are composited and temporally smoothed. We produced four weekly, atmospherically corrected, and nearly cloud-free, downscaled 30-m synthetic MODIS NDVI predictions (maps) built from these models. Model results were strong with R2 values ranging from 0.74 to 0.85. The correlation coefficients (r ≥ 0.89) were strong for all predictions when compared to corresponding original MODIS NDVI data. Downscaled products incorporated into independently developed sagebrush ecosystem models yielded mixed results. The visual quality of the downscaled 30-m synthetic MODIS NDVI predictions were remarkable when compared to the original 250-m MODIS NDVI. These 30-m maps improve knowledge of dynamic rangeland seasonal processes in the central Great Basin, United States, and provide land managers improved resource maps.

Discrepancy Between ASTER- and MODIS- Derived Land Surface Temperatures: Terrain Effects

PubMed Central

Liu, Yuanbo; Noumi, Yousuke; Yamaguchi, Yasushi

2009-01-01

The MODerate resolution Imaging Spectroradiometer (MODIS) and the Advanced Spaceborne Thermal Emission Reflection Radiometer (ASTER) are onboard the same satellite platform NASA TERRA. Both MODIS and ASTER offer routine retrieval of land surface temperatures (LSTs), and the ASTER- and MODIS-retrieved LST products have been used worldwide. Because a large fraction of the earth surface consists of mountainous areas, variations in elevation, terrain slope and aspect angles can cause biases in the retrieved LSTs. However, terrain-induced effects are generally neglected in most satellite retrievals, which may generate discrepancy between ASTER and MODIS LSTs. In this paper, we reported the terrain effects on the LST discrepancy with a case examination over a relief area at the Loess Plateau of China. Results showed that the terrain-induced effects were not major, but nevertheless important for the total LST discrepancy. A large local slope did not necessarily lead to a large LST discrepancy. The angle of emitted radiance was more important than the angle of local slope in generating the LST discrepancy. Specifically, the conventional terrain correction may be unsuitable for densely vegetated areas. The distribution of ASTER-to-MODIS emissivity suggested that the terrain correction was included in the generalized split window (GSW) based approach used to rectify MODIS LSTs. Further study should include the classification-induced uncertainty in emissivity for reliable use of satellite-retrieved LSTs over relief areas. PMID:22399955

MODIS Global Sea Surface Temperature

NASA Technical Reports Server (NTRS)

2002-01-01

Every day the Moderate-resolution Imaging Spectroradiometer (MODIS) measures sea surface temperature over the entire globe with high accuracy. This false-color image shows a one-month composite for May 2001. Red and yellow indicates warmer temperatures, green is an intermediate value, while blues and then purples are progressively colder values. The new MODIS sea surface temperature product will be particularly useful in studies of temperature anomalies, such as El Nino, as well as research into how air-sea interactions drive changes in weather and climate patterns. In the high resolution image, notice the amazing detail in some of the regional current patterns. For instance, notice the cold water currents that move from Antarctica northward along South America's west coast. These cold, deep waters upwell along an equatorial swath around and to the west of the Galapagos Islands. Note the warm, wide currents of the Gulf Stream moving up the United States' east coast, carrying Caribbean warmth toward Newfoundland and across the Atlantic toward Western Europe. Note the warm tongue of water extending from Africa's east coast to well south of the Cape of Good Hope. MODIS was launched in December 1999 aboard NASA's Terra satellite. For more details on this and other MODIS data products, please see NASA Unveils Spectacular Suite of New Global Data Products from MODIS. Image courtesy MODIS Ocean Group, NASA GSFC, and the University of Miami

Assessment of MODIS-EVI, MODIS-NDVI and VEGETATION-NDVI composite data using agricultural measurements: an example at corn fields in western Mexico.

PubMed

Chen, Pei-Yu; Fedosejevs, Gunar; Tiscareño-López, Mario; Arnold, Jeffrey G

2006-08-01

Although several types of satellite data provide temporal information of the land use at no cost, digital satellite data applications for agricultural studies are limited compared to applications for forest management. This study assessed the suitability of vegetation indices derived from the TERRA-Moderate Resolution Imaging Spectroradiometer (MODIS) sensor and SPOT-VEGETATION (VGT) sensor for identifying corn growth in western Mexico. Overall, the Normalized Difference Vegetation Index (NDVI) composites from the VGT sensor based on bi-directional compositing method produced vegetation information most closely resembling actual crop conditions. The NDVI composites from the MODIS sensor exhibited saturated signals starting 30 days after planting, but corresponded to green leaf senescence in April. The temporal NDVI composites from the VGT sensor based on the maximum value method had a maximum plateau for 80 days, which masked the important crop transformation from vegetative stage to reproductive stage. The Enhanced Vegetation Index (EVI) composites from the MODIS sensor reached a maximum plateau 40 days earlier than the occurrence of maximum leaf area index (LAI) and maximum intercepted fraction of photosynthetic active radiation (fPAR) derived from in-situ measurements. The results of this study showed that the 250-m resolution MODIS data did not provide more accurate vegetation information for corn growth description than the 500-m and 1000-m resolution MODIS data.

Reanalysis of global terrestrial vegetation trends from MODIS products: Browning or greening?

Treesearch

Yulong Zhang; Conghe Song; Lawrence E. Band; Ge Sun; Junxiang Li

2017-01-01

Accurately monitoring global vegetation dynamics with modern remote sensing is critical for understanding the functions and processes of the biosphere and its interactions with the planetary climate. The MODerate resolution Imaging Spectroradiometer (MODIS) vegetation index (VI) product has been a primary data source for this purpose. To date, theMODIS teamhad released...

Assessment of MODIS NDVI time series data products for detecting forest defoliation by gypsy moth outbreaks

Treesearch

Joseph P. Spruce; Steven Sader; Robert E. Ryan; James Smoot; Philip Kuper; al. et.

2011-01-01

This paper discusses an assessment of Moderate Resolution Imaging Spectroradiometer (MODIS) time-series data products for detecting forest defoliation from European gypsy moth (Lymantria dispar). This paper describes an effort to aid the United States Department of Agriculture (USDA) Forest Service in developing and assessing MODIS-based gypsy moth defoliation...

Cyclone Hudah As Seen By MODIS

NASA Technical Reports Server (NTRS)

2002-01-01

Tropical Cyclone Hudah was one of most powerful storms ever seen in the Indian Ocean. This image from the Moderate-resolution Imaging Spectroradiometer (MODIS) aboard Terra was taken on March 29, 2000. The structure of the eye of the storm is brought out by MODIS' 250-meter resolution. Image by Liam Gumley, Space Science and Engineering Center, University of Wisconsin-Madison

Potential for Monitoring Snow Cover in Boreal Forests by Combining MODIS Snow Cover and AMSR-E SWE Maps

NASA Technical Reports Server (NTRS)

Riggs, George A.; Hall, Dorothy K.; Foster, James L.

2009-01-01

Monitoring of snow cover extent and snow water equivalent (SWE) in boreal forests is important for determining the amount of potential runoff and beginning date of snowmelt. The great expanse of the boreal forest necessitates the use of satellite measurements to monitor snow cover. Snow cover in the boreal forest can be mapped with either the Moderate Resolution Imaging Spectroradiometer (MODIS) or the Advanced Microwave Scanning Radiometer for EOS (AMSR-E) microwave instrument. The extent of snow cover is estimated from the MODIS data and SWE is estimated from the AMSR-E. Environmental limitations affect both sensors in different ways to limit their ability to detect snow in some situations. Forest density, snow wetness, and snow depth are factors that limit the effectiveness of both sensors for snow detection. Cloud cover is a significant hindrance to monitoring snow cover extent Using MODIS but is not a hindrance to the use of the AMSR-E. These limitations could be mitigated by combining MODIS and AMSR-E data to allow for improved interpretation of snow cover extent and SWE on a daily basis and provide temporal continuity of snow mapping across the boreal forest regions in Canada. The purpose of this study is to investigate if temporal monitoring of snow cover using a combination of MODIS and AMSR-E data could yield a better interpretation of changing snow cover conditions. The MODIS snow mapping algorithm is based on snow detection using the Normalized Difference Snow Index (NDSI) and the Normalized Difference Vegetation Index (NDVI) to enhance snow detection in dense vegetation. (Other spectral threshold tests are also used to map snow using MODIS.) Snow cover under a forest canopy may have an effect on the NDVI thus we use the NDVI in snow detection. A MODIS snow fraction product is also generated but not used in this study. In this study the NDSI and NDVI components of the snow mapping algorithm were calculated and analyzed to determine how they changed through the seasons. A blended snow product, the Air Force Weather Agency and NASA (ANSA) snow algorithm and product has recently been developed. The ANSA algorithm blends the MODIS snow cover and AMSR-E SWE products into a single snow product that has been shown to improve the performance of snow cover mapping. In this study components of the ANSA snow algorithm are used along with additional MODIS data to monitor daily changes in snow cover over the period of 1 February to 30 June 2008.

Applications of Near Real-Time Image and Fire Products from MODIS

NASA Astrophysics Data System (ADS)

Schmaltz, J. E.; Ilavajhala, S.; Teague, M.; Ye, G.; Masuoka, E.; Davies, D.; Murphy, K. J.; Michael, K.

2010-12-01

NASA’s MODIS Rapid Response Project (http://rapidfire.sci.gsfc.nasa.gov/) has been providing MODIS fire detections and imagery in near real-time since 2001. The Rapid Response system is part of the Land and Atmospheres Near-real time Capability for EOS (LANCE-MODIS) system. Current capabilities include providing MODIS imagery in true color and false color band combinations, a vegetation index, and temperature - in both uncorrected swath format and geographically corrected subset regions. The geographically-corrected subsets images cover the world's land areas and adjoining waters, as well as the entire Arctic and Antarctic. These data are available within a few hours of data acquisition. The images are accessed by large number of user communities to obtain a rapid, 250 meter-resolution overview of ground conditions for fire management, crop and famine monitoring and forecasting, disaster response (fires, oil spills, floods, storms), dust and aerosol monitoring, aviation (tracking volcanic ash), monitoring sea ice conditions, environmental monitoring, and more. In addition, the scientific community uses imagery to locate phenomena of interest prior to ordering and processing data and to support the day-to-day planning of field campaigns. The MODIS Rapid Response project has also been providing a near real-time data feed on fire locations and MODIS imagery subsets to the Fire Information for Resource Management System (FIRMS) project (http://maps.geog.umd.edu/firms). FIRMS provides timely availability of fire location information, which is essential in preventing and fighting large forest/wild fires. Products are available through a WebGIS for visualizing MODIS hotspots and MCD45 Burned Area images, an email alerting tool to deliver fire data on daily/weekly/near real-time basis, active data downloads in formats such as shape, KML, CSV, WMS, etc., along with MODIS imagery subsets. FIRMS’ user base covers more than 100 countries and territories. A recent user survey showed that a majority of people use FIRMS for the purposes of conservation, fire-fighting, natural hazard monitoring, land cover change monitoring, and climate change. FIRMS has also developed a cellphone-based text (SMS) alerting of MODIS and MSG-detected fires in near real-time in South Africa, in partnership with the South African power company ESKOM and Council of Scientific and Industrial Research, South Africa. FIRMS was transitioned to the United Nations Food and Agricultural Organization (UN-FAO) in Rome, Italy in Spring 2010 and is scheduled to become a part of the LANCE-MODIS data system (http://lance.nasa.gov/) in Spring 2011.

Evaluating MODIS snow products for modelling snowmelt runoff: Case study of the Rio Grande headwaters

NASA Astrophysics Data System (ADS)

Steele, Caitriana; Dialesandro, John; James, Darren; Elias, Emile; Rango, Albert; Bleiweiss, Max

2017-12-01

Snow-covered area (SCA) is a key variable in the Snowmelt-Runoff Model (SRM) and in other models for simulating discharge from snowmelt. Landsat Thematic Mapper (TM), Enhanced Thematic Mapper (ETM +) or Operational Land Imager (OLI) provide remotely sensed data at an appropriate spatial resolution for mapping SCA in small headwater basins, but the temporal resolution of the data is low and may not always provide sufficient cloud-free dates. The coarser spatial resolution Moderate Resolution Imaging Spectroradiometer (MODIS) offers better temporal resolution and in cloudy years, MODIS data offer the best alternative for mapping snow cover when finer spatial resolution data are unavailable. However, MODIS' coarse spatial resolution (500 m) can obscure fine spatial patterning in snow cover and some MODIS products are not sensitive to end-of-season snow cover. In this study, we aimed to test MODIS snow products for use in simulating snowmelt runoff from smaller headwater basins by a) comparing maps of TM and MODIS-based SCA and b) determining how SRM streamflow simulations are changed by the different estimates of seasonal snow depletion. We compared gridded MODIS snow products (Collection 5 MOD10A1 fractional and binary SCA; SCA derived from Collection 6 MOD10A1 Normalised Difference Snow Index (NDSI) Snow Cover), and the MODIS Snow Covered-Area and Grain size retrieval (MODSCAG) canopy-corrected fractional SCA (SCAMG), with reference SCA maps (SCAREF) generated from binary classification of TM imagery. SCAMG showed strong agreement with SCAREF; excluding true negatives (where both methods agreed no snow was present) the median percent difference between SCAREF and SCAMG ranged between -2.4% and 4.7%. We simulated runoff for each of the four study years using SRM populated with and calibrated for snow depletion curves derived from SCAREF. We then substituted in each of the MODIS-derived depletion curves. With efficiency coefficients ranging between 0.73 and 0.93, SRM simulation results from the SCAMG runs yielded the best results of all the MODIS products and only slightly underestimated discharge volume (between 7 and 11% of measured annual discharge). SRM simulations that used SCA derived from Collection 6 NDSI Snow Cover also yielded promising results, with efficiency coefficients ranging between 0.73 and 0.91. In conclusion, we recommend that when simulating snowmelt runoff from small basins (<4000 km2) with SRM, we recommend that users select either canopy-corrected MODSCAG or create their own site-specific products from the Collection 6 MOD10A1 NDSI.

An efficient approach for pixel decomposition to increase the spatial resolution of land surface temperature images from MODIS thermal infrared band data.

PubMed

Wang, Fei; Qin, Zhihao; Li, Wenjuan; Song, Caiying; Karnieli, Arnon; Zhao, Shuhe

2014-12-25

Land surface temperature (LST) images retrieved from the thermal infrared (TIR) band data of Moderate Resolution Imaging Spectroradiometer (MODIS) have much lower spatial resolution than the MODIS visible and near-infrared (VNIR) band data. The coarse pixel scale of MODIS LST images (1000 m under nadir) have limited their capability in applying to many studies required high spatial resolution in comparison of the MODIS VNIR band data with pixel scale of 250-500 m. In this paper we intend to develop an efficient approach for pixel decomposition to increase the spatial resolution of MODIS LST image using the VNIR band data as assistance. The unique feature of this approach is to maintain the thermal radiance of parent pixels in the MODIS LST image unchanged after they are decomposed into the sub-pixels in the resulted image. There are two important steps in the decomposition: initial temperature estimation and final temperature determination. Therefore the approach can be termed double-step pixel decomposition (DSPD). Both steps involve a series of procedures to achieve the final result of decomposed LST image, including classification of the surface patterns, establishment of LST change with normalized difference of vegetation index (NDVI) and building index (NDBI), reversion of LST into thermal radiance through Planck equation, and computation of weights for the sub-pixels of the resulted image. Since the Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) with much higher spatial resolution than MODIS data was on-board the same platform (Terra) as MODIS for Earth observation, an experiment had been done in the study to validate the accuracy and efficiency of our approach for pixel decomposition. The ASTER LST image was used as the reference to compare with the decomposed LST image. The result showed that the spatial distribution of the decomposed LST image was very similar to that of the ASTER LST image with a root mean square error (RMSE) of 2.7 K for entire image. Comparison with the evaluation DisTrad (E-DisTrad) and re-sampling methods for pixel decomposition also indicate that our DSPD has the lowest RMSE in all cases, including urban region, water bodies, and natural terrain. The obvious increase in spatial resolution remarkably uplifts the capability of the coarse MODIS LST images in highlighting the details of LST variation. Therefore it can be concluded that, in spite of complicated procedures, the proposed DSPD approach provides an alternative to improve the spatial resolution of MODIS LST image hence expand its applicability to the real world.

The Impact of Different Regimes in Estimating the Effects of Aerosols on Clouds. A Case Study over the Baltic Sea Countries.

NASA Astrophysics Data System (ADS)

Saponaro, G.

2015-12-01

The present study investigates the use of long-term satellite data to assess the influence of aerosols upon cloud parameters over the Baltic Sea region. This particular area offers the contrast of a very clean environment (Fennoscandia) against a more polluted one (Germany, Poland). The datasets used in this study consist of Collection 6 Level 3 daily observations from 2002 to 2014 retrieved from observations by the NASA's Moderate-Resolution Imaging Spectrometer (MODIS) instrument on-board the Aqua platform. The MODIS aerosol optical depth (AOD) and aerosol index (AI) products are used as a proxy for the number concentration of aerosol particles while the cloud effective radius (CER) and cloud optical thickness (COT) describe cloud microphysical and optical properties respectively. Through the analysis of a 12-years dataset, distribution maps provide information on a regional scale about the first aerosol indirect effect (AIE) by determining the aerosol-cloud interaction (ACI). The ACI is defined as the change in cloud optical depth or effective radius as a function of aerosol load, for which AI is used as a proxy, for a fixed liquid water path (LWP). Reanalysis data from ECMWF, namely ERA-Interim, are used to estimate meteorological settings on a regional scale. The relative humidity (RH) and specific humidity (SH) are chosen at the pressure level of 950 hPa and they are linearly interpolated to match MODIS resolution of 1 x 1 deg. The Lower Tropospheric Stability (LTS) is computed from the ERA- Interim reanalysis data as the difference between the potential temperature at 700hPa and the surface. In order to better identify and interpret the AIE, this study proposes a framework where the interactions between aerosols and clouds are estimated by dividing the dataset into different regimes. Regimes are defined by: Liquid Water Path (LWP). The discrimination by LWP allows assessing the Twomey effect. The AIE is more evident when the LWP is lower. Aerosol loading (both AOD and AI). Separated aerosol settings (AI/AOD <25th percentile versus AI/AOD > 75th percentile) provide information regarding the saturation effect. Meteorological environments. LTS determines an unstable thermodynamic environment (LTS <25th percentile) and a stable one ( LTS >75th percentile).

Calibration Challenges and Improvements for Terra and Aqua MODIS Level-1B Data Product Qualit

NASA Astrophysics Data System (ADS)

Xiong, X.; Angal, A.; Chen, H.; Geng, X.; Li, Y.; Link, D.; Salomonson, V.; Twedt, K.; Wang, Z.; Wilson, T.; Wu, A.

2017-12-01

Terra and Aqua MODIS instruments launched in 1999 and 2002, respectively, have provided the remote sensing community and users worldwide a series of high quality long-term data records. They have enabled a broad range of scientific studies of the Earth's system and changes in its key geophysical and environmental parameters. To date, both MODIS instruments continue to operate nominally with all on-board calibrators (OBC) functioning properly. MODIS reflective solar bands (RSB) are currently calibrated by a solar diffuser (SD) and solar diffuser stability monitor (SDSM) system, coupled with regularly scheduled lunar observations and trending results from selected ground reference targets. The thermal emissive bands (TEB) calibration is performed using an on-board blackbody (BB) on a scan-by-scan basis. The sensor's spectral and spatial characteristics are periodically tracked by the on-board spectroradiometric calibration assembly (SRCA). On-orbit changes in sensor responses or performance characteristics, often in non-deterministic ways, underscore the need for dedicated calibration efforts to be made over the course of the sensor's entire mission. For MODIS instruments, this task has been undertaken by the MODIS Characterization Support Team (MCST). In this presentation, we provide an overview of MODIS instrument operation and calibration activities with a focus on recent challenging issues. We describe the efforts made and methodologies developed to address various challenging issues, including on-orbit characterization of sensor response versus scan angle (RVS) and polarization sensitives in the reflective solar spectral region, and electronic crosstalk impact on sensor calibration. Also discussed are the latest improvements made into the MODIS Level-1B data products as well as lessons that could benefit other instruments (e.g. VIIRS) for their on-orbit calibration and characterization.

Ocean Primary Production Estimates from Terra MODIS and Their Dependency on Satellite Chlorophyll Alpha Algorithms

NASA Technical Reports Server (NTRS)

Essias, Wayne E.; Abbott, Mark; Carder, Kendall; Campbell, Janet; Clark, Dennis; Evans, Robert; Brown, Otis; Kearns, Ed; Kilpatrick, Kay; Balch, W.

2003-01-01

Simplistic models relating global satellite ocean color, temperature, and light to ocean net primary production (ONPP) are sensitive to the accuracy and limitations of the satellite estimate of chlorophyll and other input fields, as well as the primary productivity model. The standard MODIS ONPP product uses the new semi-analytic chlorophyll algorithm as its input for two ONPP indexes. The three primary MODIS chlorophyll Q estimates from MODIS, as well as the SeaWiFS 4 chlorophyll product, were used to assess global and regional performance in estimating ONPP for the full mission, but concentrating on 2001. The two standard ONPP algorithms were examined with 8-day and 39 kilometer resolution to quantify chlorophyll algorithm dependency of ONPP. Ancillary data (MLD from FNMOC, MODIS SSTD1, and PAR from the GSFC DAO) were identical. The standard MODIS ONPP estimates for annual production in 2001 was 59 and 58 GT C for the two ONPP algorithms. Differences in ONPP using alternate chlorophylls were on the order of 10% for global annual ONPP, but ranged to 100% regionally. On all scales the differences in ONPP were smaller between MODIS and SeaWiFS than between ONPP models, or among chlorophyll algorithms within MODIS. Largest regional ONPP differences were found in the Southern Ocean (SO). In the SO, application of the semi-analytic chlorophyll resulted in not only a magnitude difference in ONPP (2x), but also a temporal shift in the time of maximum production compared to empirical algorithms when summed over standard oceanic areas. The resulting increase in global ONPP (6-7 GT) is supported by better performance of the semi-analytic chlorophyll in the SO and other high chlorophyll regions. The differences are significant in terms of understanding regional differences and dynamics of ocean carbon transformations.

Validation of MODIS integrated water vapor product against reference GPS data at the Iberian Peninsula

NASA Astrophysics Data System (ADS)

Vaquero-Martínez, Javier; Antón, Manuel; Ortiz de Galisteo, José Pablo; Cachorro, Victoria E.; Costa, Maria João; Román, Roberto; Bennouna, Yasmine S.

2017-12-01

In this work, the water vapor product from MODIS (MODerate-resolution Imaging Spectroradiometer) instrument, on-board Aqua and Terra satellites, is compared against GPS water vapor data from 21 stations in the Iberian Peninsula as reference. GPS water vapor data is obtained from ground-based receiver stations which measure the delay caused by water vapor in the GPS microwave signals. The study period extends from 2007 until 2012. Regression analysis in every GPS station show that MODIS overestimates low integrated water vapor (IWV) data and tends to underestimate high IWV data. R2 shows a fair agreement, between 0.38 and 0.71. Inter-quartile range (IQR) in every station is around 30-45%. The dependence on several parameters was also analyzed. IWV dependence showed that low IWV are highly overestimated by MODIS, with high IQR (low precision), sharply decreasing as IWV increases. Regarding dependence on solar zenith angle (SZA), performance of MODIS IWV data decreases between 50° and 90°, while night-time MODIS data (infrared) are quite stable. The seasonal cycles of IWV and SZA cause a seasonal dependence on MODIS performance. In summer and winter, MODIS IWV tends to overestimate the reference IWV value, while in spring and autumn the tendency is to underestimate. Low IWV from coastal stations is highly overestimated (∼60%) and quite imprecise (IQR around 60%). On the contrary, high IWV data show very little dependence along seasons. Cloud-fraction (CF) dependence was also studied, showing that clouds display a negligible impact on IWV over/underestimation. However, IQR increases with CF, except in night-time satellite values, which are quite stable.

Tropical Atlantic Dust and Smoke Aerosol Variabilities Related to the Madden-Julian Oscillation in MODIS and MISR Observations

NASA Technical Reports Server (NTRS)

Guo, Yanjuan; Tian, Baijun; Kahn, Ralph A.; Kalashnikova, Olga; Wong, Sun; Waliser, Duane E.

2012-01-01

In this study, MODIS fine mode fraction and MISR non-spherical fraction are 2used to derive dust and smoke AOT components (tau(sub dust) and tau(sub smoke)) over the tropical Atlantic, and their variabilities related to the Madden-Julian Oscillation (MJO) are then investigated. Both MODIS and MISR show a very similar dust and smoke winter climatology. tau(sub dust) is found to be the dominant aerosol component over the tropical Atlantic while tau(sub smoke) is significantly smaller than tau(sub dust). The daily MODIS and MISR tau(sub dust) are overall highly correlated, with the correlation coefficients typically about 0.7 over the North Atlantic. The consistency between the MODIS and MISR dust and smoke aerosol climatology and daily variations give us confidence to use these two data sets to investigate their relative contributions to the total AOT variation associated with the MJO. However, unlike the MISR dust discrimination, which is based on particle shape retrievals, the smoke discrimination is less certain, based on assumed partitioning of maritime aerosol for both MISR and MODIS. The temporal evolution and spatial patterns of the tau(sub dust) anomalies associated with the MJO are consistent between MODIS and MISR. The tau(sub dust) anomalies are very similar to those of tau anomalies, and are of comparable magnitude. In contrast, the MJO-related tau(sub smoke) anomalies are rather small, and the tau(sub mar) anomalies are negligible. The consistency between the MODIS and MISR results suggests that dust aerosol is the dominant component on the intra-seasonal time scale over the tropical Atlantic Ocean.

Reconciling Simulated and Observed Views of Clouds: MODIS, ISCCP, and the Limits or Instrument Simulators

NASA Technical Reports Server (NTRS)

Ackerman, Steven A.; Hemler, Richard S.; Hofman, Robert J. Patrick; Pincus, Robert; Platnick, Steven

2011-01-01

The properties of clouds that may be observed by satellite instruments, such as optical depth and cloud top pressure, are only loosely related to the way clouds m-e represented in models of the atmosphere. One way to bridge this gap is through "instrument simulators," diagnostic tools that map the model representation to synthetic observations so that differences between simulator output and observations can be interpreted unambiguously as model error. But simulators may themselves be restricted by limited information available from the host model or by internal assumptions. This paper considers the extent to which instrument simulators are able to capture essential differences between MODIS and ISCCP, two similar but independent estimates of cloud properties. The authors review the measurements and algorithms underlying these two cloud climatologies, introduce a MODIS simulator, and detail data sets developed for comparison with global models using ISCCP and MODIS simulators, In nature MODIS observes less mid-level doudines!> than ISCCP, consistent with the different methods used to determine cloud top pressure; aspects of this difference are reproduced by the simulators running in a climate modeL But stark differences between MODIS and ISCCP observations of total cloudiness and the distribution of cloud optical thickness can be traced to different approaches to marginal pixels, which MODIS excludes and ISCCP treats as homogeneous. These pixels, which likely contain broken clouds, cover about 15 k of the planet and contain almost all of the optically thinnest clouds observed by either instrument. Instrument simulators can not reproduce these differences because the host model does not consider unresolved spatial scales and so can not produce broken pixels. Nonetheless, MODIS and ISCCP observation are consistent for all but the optically-thinnest clouds, and models can be robustly evaluated using instrument simulators by excluding ambiguous observations.

Multi-Angle Implementation of Atmospheric Correction for MODIS (MAIAC). Part 3: Atmospheric Correction

NASA Technical Reports Server (NTRS)

Lyapustin, A.; Wang, Y.; Laszlo, I.; Hilker, T.; Hall, F.; Sellers, P.; Tucker, J.; Korkin, S.

2012-01-01

This paper describes the atmospheric correction (AC) component of the Multi-Angle Implementation of Atmospheric Correction algorithm (MAIAC) which introduces a new way to compute parameters of the Ross-Thick Li-Sparse (RTLS) Bi-directional reflectance distribution function (BRDF), spectral surface albedo and bidirectional reflectance factors (BRF) from satellite measurements obtained by the Moderate Resolution Imaging Spectroradiometer (MODIS). MAIAC uses a time series and spatial analysis for cloud detection, aerosol retrievals and atmospheric correction. It implements a moving window of up to 16 days of MODIS data gridded to 1 km resolution in a selected projection. The RTLS parameters are computed directly by fitting the cloud-free MODIS top of atmosphere (TOA) reflectance data stored in the processing queue. The RTLS retrieval is applied when the land surface is stable or changes slowly. In case of rapid or large magnitude change (as for instance caused by disturbance), MAIAC follows the MODIS operational BRDF/albedo algorithm and uses a scaling approach where the BRDF shape is assumed stable but its magnitude is adjusted based on the latest single measurement. To assess the stability of the surface, MAIAC features a change detection algorithm which analyzes relative change of reflectance in the Red and NIR bands during the accumulation period. To adjust for the reflectance variability with the sun-observer geometry and allow comparison among different days (view geometries), the BRFs are normalized to the fixed view geometry using the RTLS model. An empirical analysis of MODIS data suggests that the RTLS inversion remains robust when the relative change of geometry-normalized reflectance stays below 15%. This first of two papers introduces the algorithm, a second, companion paper illustrates its potential by analyzing MODIS data over a tropical rainforest and assessing errors and uncertainties of MAIAC compared to conventional MODIS products.

An Overview of the Earth Observing System Moderate Resolution Imaging Spectroradiometer (MODIS) Data Products and Availability for Environmental Applications and Global Change Studies

NASA Technical Reports Server (NTRS)

Salomonson, V. V.

2003-01-01

The Moderate Resolution Imaging Spectroradiometer (MODIS) on the Earth Observing System (EOS) Terra Mission began to produce data in February 2000. The Terra MODIS is in a sun-synchronous orbit going north to south in the daylight portion of the orbit crossing the equator at about 1030 hours local time. The spacecraft, instrument, and data systems are performing well and are producing a wide variety of data products useful for scientific and applications studies in relatively consistent fashion extending from November 2000 to the present. Within the approximately 40 MODIS data products, several are new and represent powerful and exciting capabilities such the ability to provide observations over the globe of fire occurrences, microphysical properties of clouds and sun-stimulated fluorescence from phytoplankton in the surface waters of the ocean. The remainder of the MODIS products exceeds or, at a minimum, matches the capabilities of products from heritage sensors such as, for example, the Advanced Very High Resolution Radiometer (AVHRR). Efforts are underway to provide data sets for the greater Earth science community and to improve access to these products at the various Distributed Active Archive Centers (DAACs) or through Direct Broadcast (DB) stations. The EOS Aqua mission was launched successfully May 4,2002 with another MODIS on it. The Aqua spacecraft operates in a sun-synchronous orbit going south to north in the daylight portion of the orbit crossing the equator at approximately 1330 hours local time. Subsequently the Aqua MODIS observations will substantially add to the capabilities of the Terra MODIS for environmental applications and global change studies.

An Overview of the Earth Observing System Moderate Resolution Imaging Spectroradiometer (MODIS) Data Products Status and Availability for Environmental Applications and Global Change Studies

NASA Technical Reports Server (NTRS)

Salomonson, Vincent V.; Houser, Paul (Technical Monitor)

2002-01-01

The Moderate Resolution Imaging Spectroradiometer (MODIS) on the Earth Observing System (EOS) Terra Mission began to produce data in February 2000. The Terra MODIS is in a sun-synchronous orbit going north to south in the daylight portion of the orbit crossing the equator at about 1030 hours local time. The spacecraft, instrument, and data systems are performing well and are producing a wide variety of data products useful for scientific and applications studies in relatively consistent fashion extending from November 2000 to the present. Within the approximately 40 MODIS data products, several are new and represent powerful and exciting capabilities such the ability to provide observations over the globe of fire occurrences, microphysical properties of clouds and sun-stimulated fluorescence from phytoplankton in the surface waters of the ocean. The remainder of the MODIS products exceed or, at a minimum, match the capabilities of products from heritage sensors such as, for example, the Advanced Very High Resolution Radiometer (AVHRR). Efforts are underway to provide data sets for the greater Earth science community and to improve access to these products at the various Distributed Active Archive Centers (DAAC's) or through Direct Broadcast (DB) stations. The MODIS instrument on the EOS Aqua mission should also be expected to be in orbit and functioning in the Spring of 2002. The Aqua spacecraft will operate in a sun-synchronous orbit going south to north in the daylight portion of the orbit crossing the equator at approximately 1330 hours local time. Subsequently the Aqua MODIS observations will substantially add to the capabilities of the Terra MODIS for environmental applications and global change studies.

Comparative Analysis of Daytime Fire Detection Algorithms, Using AVHRR Data for the 1995 Fire Season in Canda: Perspective for MODIS

NASA Technical Reports Server (NTRS)

Ichoku, Charles; Kaufman, Y. J.; Fraser, R. H.; Jin, J.-Z.; Park, W. M.; Lau, William K. M. (Technical Monitor)

2001-01-01

Two fixed-threshold Canada Centre for Remote Sensing and European Space Agency (CCRS and ESA) and three contextual GIGLIO, International Geosphere and Biosphere Project, and Moderate Resolution Imaging Spectroradiometer (GIGLIO, IGBP, and MODIS) algorithms were used for fire detection with Advanced Very High Resolution Radiometer (AVHRR) data acquired over Canada during the 1995 fire season. The CCRS algorithm was developed for the boreal ecosystem, while the other four are for global application. The MODIS algorithm, although developed specifically for use with the MODIS sensor data, was applied to AVHRR in this study for comparative purposes. Fire detection accuracy assessment for the algorithms was based on comparisons with available 1995 burned area ground survey maps covering five Canadian provinces. Overall accuracy estimations in terms of omission (CCRS=46%, ESA=81%, GIGLIO=75%, IGBP=51%, MODIS=81%) and commission (CCRS=0.35%, ESA=0.08%, GIGLIO=0.56%, IGBP=0.75%, MODIS=0.08%) errors over forested areas revealed large differences in performance between the algorithms, with no relevance to type (fixed-threshold or contextual). CCRS performed best in detecting real forest fires, with the least omission error, while ESA and MODIS produced the highest omission error, probably because of their relatively high threshold values designed for global application. The commission error values appear small because the area of pixels falsely identified by each algorithm was expressed as a ratio of the vast unburned forest area. More detailed study shows that most commission errors in all the algorithms were incurred in nonforest agricultural areas, especially on days with very high surface temperatures. The advantage of the high thresholds in ESA and MODIS was that they incurred the least commission errors.

AIRS Subpixel Cloud Characterization Using MODIS Cloud Products.

NASA Astrophysics Data System (ADS)

Li, Jun; Menzel, W. Paul; Sun, Fengying; Schmit, Timothy J.; Gurka, James

2004-08-01

The Moderate Resolution Imaging Spectroradiometer (MODIS) and the Atmospheric Infrared Sounder (AIRS) measurements from the Earth Observing System's (EOS's) Aqua satellite enable improved global monitoring of the distribution of clouds. MODIS is able to provide, at high spatial resolution (1 5 km), a cloud mask, surface and cloud types, cloud phase, cloud-top pressure (CTP), effective cloud amount (ECA), cloud particle size (CPS), and cloud optical thickness (COT). AIRS is able to provide CTP, ECA, CPS, and COT at coarser spatial resolution (13.5 km at nadir) but with much better accuracy using its high-spectral-resolution measurements. The combined MODIS AIRS system offers the opportunity for improved cloud products over those possible from either system alone. The key steps for synergistic use of imager and sounder radiance measurements are 1) collocation in space and time and 2) imager cloud amount, type, and phase determination within the sounder pixel. The MODIS and AIRS measurements from the EOS Aqua satellite provide the opportunity to study the synergistic use of advanced imager and sounder measurements. As the first step, the MODIS classification procedure is applied to identify various surface and cloud types within an AIRS footprint. Cloud-layer information (lower, midlevel, or high clouds) and phase information (water, ice, or mixed-phase clouds) within the AIRS footprint are sorted and characterized using MODIS 1-km-spatial-resolution data. The combined MODIS and AIRS data for various scenes are analyzed to study the utility of the synergistic use of high-spatial-resolution imager products and high-spectral-resolution sounder radiance measurements. There is relevance to the optimal use of data from the Advanced Baseline Imager (ABI) and Hyperspectral Environmental Suite (HES) systems, which are to fly on the Geostationary Operational Environmental Satellite (GOES)-R.

Global Data for Ecology and Epidemiology: A Novel Algorithm for Temporal Fourier Processing MODIS Data

PubMed Central

Scharlemann, Jörn P. W.; Benz, David; Hay, Simon I.; Purse, Bethan V.; Tatem, Andrew J.; Wint, G. R. William; Rogers, David J.

2008-01-01

Background Remotely-sensed environmental data from earth-orbiting satellites are increasingly used to model the distribution and abundance of both plant and animal species, especially those of economic or conservation importance. Time series of data from the MODerate-resolution Imaging Spectroradiometer (MODIS) sensors on-board NASA's Terra and Aqua satellites offer the potential to capture environmental thermal and vegetation seasonality, through temporal Fourier analysis, more accurately than was previously possible using the NOAA Advanced Very High Resolution Radiometer (AVHRR) sensor data. MODIS data are composited over 8- or 16-day time intervals that pose unique problems for temporal Fourier analysis. Applying standard techniques to MODIS data can introduce errors of up to 30% in the estimation of the amplitudes and phases of the Fourier harmonics. Methodology/Principal Findings We present a novel spline-based algorithm that overcomes the processing problems of composited MODIS data. The algorithm is tested on artificial data generated using randomly selected values of both amplitudes and phases, and provides an accurate estimate of the input variables under all conditions. The algorithm was then applied to produce layers that capture the seasonality in MODIS data for the period from 2001 to 2005. Conclusions/Significance Global temporal Fourier processed images of 1 km MODIS data for Middle Infrared Reflectance, day- and night-time Land Surface Temperature (LST), Normalised Difference Vegetation Index (NDVI), and Enhanced Vegetation Index (EVI) are presented for ecological and epidemiological applications. The finer spatial and temporal resolution, combined with the greater geolocational and spectral accuracy of the MODIS instruments, compared with previous multi-temporal data sets, mean that these data may be used with greater confidence in species' distribution modelling. PMID:18183289

Reassessment of the putative role of BLK-p.A71T loss-of-function mutation in MODY and type 2 diabetes.

PubMed

Bonnefond, A; Yengo, L; Philippe, J; Dechaume, A; Ezzidi, I; Vaillant, E; Gjesing, A P; Andersson, E A; Czernichow, S; Hercberg, S; Hadjadj, S; Charpentier, G; Lantieri, O; Balkau, B; Marre, M; Pedersen, O; Hansen, T; Froguel, P; Vaxillaire, M

2013-03-01

MODY is believed to be caused by at least 13 different genes. Five rare mutations at the BLK locus, including only one non-synonymous p.A71T variant, were reported to segregate with diabetes in three MODY families. The p.A71T mutation was shown to abolish the enhancing effect of BLK on insulin content and secretion from pancreatic beta cell lines. Here, we reassessed the contribution of BLK to MODY and tested the effect of BLK-p.A71T on type 2 diabetes risk and variations in related traits. BLK was sequenced in 64 unelucidated MODY samples. The BLK-p.A71T variant was genotyped in a French type 2 diabetes case-control study including 4,901 cases and 4,280 controls, and in the DESIR (Data from an Epidemiological Study on the Insulin Resistance Syndrome) and SUVIMAX (Supplementation en Vitamines et Mineraux Antioxydants) population-based cohorts (n = 6,905). The variant effects were assessed by logistic and linear regression models. No rare non-synonymous BLK mutations were found in the MODY patients. The BLK p.A71T mutation was present in 52 normoglycaemic individuals, making it very unlikely that this loss-of-function mutation causes highly penetrant MODY. We found a nominal association between this variant and increased type 2 diabetes risk, with an enrichment of the mutation in the obese diabetic patients, although no significant association with BMI was identified. No mutation in BLK was found in our MODY cohort. From our findings, the BLK-p.A71T mutation may weakly influence type 2 diabetes risk in the context of obesity; however, this will require further validation.

Incremental cost-effectiveness of algorithm-driven genetic testing versus no testing for Maturity Onset Diabetes of the Young (MODY) in Singapore.

PubMed

Nguyen, Hai Van; Finkelstein, Eric Andrew; Mital, Shweta; Gardner, Daphne Su-Lyn

2017-11-01

Offering genetic testing for Maturity Onset Diabetes of the Young (MODY) to all young patients with type 2 diabetes has been shown to be not cost-effective. This study tests whether a novel algorithm-driven genetic testing strategy for MODY is incrementally cost-effective relative to the setting of no testing. A decision tree was constructed to estimate the costs and effectiveness of the algorithm-driven MODY testing strategy and a strategy of no genetic testing over a 30-year time horizon from a payer's perspective. The algorithm uses glutamic acid decarboxylase (GAD) antibody testing (negative antibodies), age of onset of diabetes (<45 years) and body mass index (<25 kg/m 2 if diagnosed >30 years) to stratify the population of patients with diabetes into three subgroups, and testing for MODY only among the subgroup most likely to have the mutation. Singapore-specific costs and prevalence of MODY obtained from local studies and utility values sourced from the literature are used to populate the model. The algorithm-driven MODY testing strategy has an incremental cost-effectiveness ratio of US$93 663 per quality-adjusted life year relative to the no testing strategy. If the price of genetic testing falls from US$1050 to US$530 (a 50% decrease), it will become cost-effective. Our proposed algorithm-driven testing strategy for MODY is not yet cost-effective based on established benchmarks. However, as genetic testing prices continue to fall, this strategy is likely to become cost-effective in the near future. © Article author(s) (or their employer(s) unless otherwise stated in the text of the article) 2017. All rights reserved. No commercial use is permitted unless otherwise expressly granted.

A genetic diagnosis of maturity-onset diabetes of the young (MODY): experiences of patients and family members.

PubMed

Bosma, A R; Rigter, T; Weinreich, S S; Cornel, M C; Henneman, L

2015-10-01

Genetic testing for maturity-onset diabetes of the young (MODY) facilitates a correct diagnosis, enabling treatment optimization and allowing monitoring of asymptomatic family members. To date, the majority of people with MODY remain undiagnosed. To identify patients' needs and areas for improving care, this study explores the experiences of patients and family members who have been genetically tested for MODY. Fourteen semi-structured interviews with patients and the parents of patients, and symptomatic and asymptomatic family members were conducted. Atlas.ti was used for thematic analysis. Most people with MODY were initially misdiagnosed with Type 1 or Type 2 diabetes; they had been seeking for the correct diagnosis for a long time. Reasons for having a genetic test included reassurance, removing the uncertainty of developing diabetes (in asymptomatic family members) and informing relatives. Reasons against testing were the fear of genetic discrimination and not having symptoms. Often a positive genetic test result did not come as a surprise. Both patients and family members were satisfied with the decision to get tested because it enabled them to adjust their lifestyle and treatment accordingly. All participants experienced a lack of knowledge of MODY among healthcare professionals, in their social environment and in patient organizations. Additionally, problems with the reimbursement of medical expenses were reported. Patients and family members are generally positive about genetic testing for MODY. More education of healthcare professionals and attention on the part of diabetes organizations is needed to increase awareness and optimize care and support for people with MODY. © 2015 The Authors. Diabetic Medicine © 2015 Diabetes UK.

A Satellite-Derived Climate-Quality Data Record of the Clear-Sky Surface Temperature of the Greenland Ice Sheet

NASA Technical Reports Server (NTRS)

Hall, Dorothy K.; Comiso, Josefino C.; DiGirolamo, Nicolo E.; Shuman, Christopher A.; Key, Jeffrey R.; Koenig, Lora S.

2011-01-01

We have developed a climate-quality data record of the clear-sky surface temperature of the Greenland Ice Sheet using the Moderate-Resolution Imaging Spectroradiometer (MODIS) Terra ice-surface temperature (1ST) algorithm. A climate-data record (CDR) is a time series of measurements of sufficient length, consistency, and continuity to determine climate variability and change. We present daily and monthly Terra MODIS ISTs of the Greenland Ice Sheet beginning on 1 March 2000 and continuing through 31 December 2010 at 6.25-km spatial resolution on a polar stereographic grid within +/-3 hours of 17:00Z or 2:00 PM Local Solar Time. Preliminary validation of the ISTs at Summit Camp, Greenland, during the 2008-09 winter, shows that there is a cold bias using the MODIS IST which underestimates the measured surface temperature by approximately 3 C when temperatures range from approximately -50 C to approximately -35 C. The ultimate goal is to develop a CDR that starts in 1981 with the Advanced Very High Resolution (AVHRR) Polar Pathfinder (APP) dataset and continues with MODIS data from 2000 to the present. Differences in the APP and MODIS cloud masks have so far precluded the current IST records from spanning both the APP and MODIS IST time series in a seamless manner though this will be revisited when the APP dataset has been reprocessed. The Greenland IST climate-quality data record is suitable for continuation using future Visible Infrared Imager Radiometer Suite (VIIRS) data and will be elevated in status to a CDR when at least 9 more years of climate-quality data become available either from MODIS Terra or Aqua, or from the VIIRS. The complete MODIS IST data record will be available online in the summer of 2011.

Evaluation of MODIS aerosol optical depth for semi­-arid environments in complex terrain

NASA Astrophysics Data System (ADS)

Holmes, H.; Loria Salazar, S. M.; Panorska, A. K.; Arnott, W. P.; Barnard, J.

2015-12-01

The use of satellite remote sensing to estimate spatially resolved ground level air pollutant concentrations is increasing due to advancements in remote sensing technology and the limited number of surface observations. Satellite retrievals provide global, spatiotemporal air quality information and are used to track plumes, estimate human exposures, model emissions, and determine sources (i.e., natural versus anthropogenic) in regulatory applications. Ground level PM2.5 concentrations can be estimated using columnar aerosol optical depth (AOD) from MODIS, where the satellite retrieval serves as a spatial surrogate to simulate surface PM2.5 gradients. The spatial statistical models and MODIS AOD retrieval algorithms have been evaluated for the dark, vegetated eastern US, while the semi-arid western US continues to be an understudied region with associated complexity due to heterogeneous emissions, smoke from wildfires, and complex terrain. The objective of this work is to evaluate the uncertainty of MODIS AOD retrievals by comparing with columnar AOD and surface PM2.5 measurements from AERONET and EPA networks. Data is analyzed from multiple stations in California and Nevada for three years where four major wildfires occurred. Results indicate that MODIS retrievals fail to estimate column-integrated aerosol pollution in the summer months. This is further investigated by quantifying the statistical relationships between MODIS AOD, AERONET AOD, and surface PM2.5 concentrations. Data analysis indicates that the distribution of MODIS AOD is significantly (p<0.05) different than AERONET AOD. Further, using the results of distributional and association analysis the impacts of MODIS AOD uncertainties on the spatial gradients are evaluated. Additionally, the relationships between these uncertainties and physical parameters in the retrieval algorithm (e.g., surface reflectance, Ångström Extinction Exponent) are discussed.

Global data for ecology and epidemiology: a novel algorithm for temporal Fourier processing MODIS data.

PubMed

Scharlemann, Jörn P W; Benz, David; Hay, Simon I; Purse, Bethan V; Tatem, Andrew J; Wint, G R William; Rogers, David J

2008-01-09

Remotely-sensed environmental data from earth-orbiting satellites are increasingly used to model the distribution and abundance of both plant and animal species, especially those of economic or conservation importance. Time series of data from the MODerate-resolution Imaging Spectroradiometer (MODIS) sensors on-board NASA's Terra and Aqua satellites offer the potential to capture environmental thermal and vegetation seasonality, through temporal Fourier analysis, more accurately than was previously possible using the NOAA Advanced Very High Resolution Radiometer (AVHRR) sensor data. MODIS data are composited over 8- or 16-day time intervals that pose unique problems for temporal Fourier analysis. Applying standard techniques to MODIS data can introduce errors of up to 30% in the estimation of the amplitudes and phases of the Fourier harmonics. We present a novel spline-based algorithm that overcomes the processing problems of composited MODIS data. The algorithm is tested on artificial data generated using randomly selected values of both amplitudes and phases, and provides an accurate estimate of the input variables under all conditions. The algorithm was then applied to produce layers that capture the seasonality in MODIS data for the period from 2001 to 2005. Global temporal Fourier processed images of 1 km MODIS data for Middle Infrared Reflectance, day- and night-time Land Surface Temperature (LST), Normalised Difference Vegetation Index (NDVI), and Enhanced Vegetation Index (EVI) are presented for ecological and epidemiological applications. The finer spatial and temporal resolution, combined with the greater geolocational and spectral accuracy of the MODIS instruments, compared with previous multi-temporal data sets, mean that these data may be used with greater confidence in species' distribution modelling.

Global Enhanced Vegetation Index

NASA Technical Reports Server (NTRS)

2002-01-01

By carefully measuring the wavelengths and intensity of visible and near-infrared light reflected by the land surface back up into space, the Moderate-resolution Imaging Spectroradiometer (MODIS) Team can quantify the concentrations of green leaf vegetation around the world. The above MODIS Enhanced Vegetation Index (EVI) map shows the density of plant growth over the entire globe. Very low values of EVI (white and brown areas) correspond to barren areas of rock, sand, or snow. Moderate values (light greens) represent shrub and grassland, while high values indicate temperate and tropical rainforests (dark greens). The MODIS EVI gives scientists a new tool for monitoring major fluctuations in vegetation and understanding how they affect, and are affected by, regional climate trends. For more information, read NASA Unveils Spectacular Suite of New Global Data Products from MODIS. Image courtesy MODIS Land Group/Vegetation Indices, Alfredo Huete, Principal Investigator, and Kamel Didan, University of Arizona

MODIS land data at the EROS data center DAAC

USGS Publications Warehouse

Jenkerson, Calli B.; Reed, B.C.

2001-01-01

The US Geological Survey's (USGS) Earth Resources Observation Systems (EROS) Data Center (EDC) in Sioux Falls, SD, USA, is the primary national archive for land processes data and one of the National Aeronautics and Space Administration's (NASA) Distributed Active Archive Centers (DAAC) for the Earth Observing System (EOS). One of EDC's functions as a DAAC is the archival and distribution of Moderate Resolution Spectroradiometer (MODIS) Land Data collected from the Earth Observing System (EOS) satellite Terra. More than 500,000 publicly available MODIS land data granules totaling 25 Terabytes (Tb) are currently stored in the EDC archive. This collection is managed, archived, and distributed by EOS Data and Information System (EOSDIS) Core System (ECS) at EDC. EDC User Services support the use of MODIS Land data, which include land surface reflectance/albedo, temperature/emissivity, vegetation characteristics, and land cover, by responding to user inquiries, constructing user information sites on the EDC web page, and presenting MODIS materials worldwide.

Comparison of sampling designs for estimating deforestation from landsat TM and MODIS imagery: a case study in Mato Grosso, Brazil.

PubMed

Zhu, Shanyou; Zhang, Hailong; Liu, Ronggao; Cao, Yun; Zhang, Guixin

2014-01-01

Sampling designs are commonly used to estimate deforestation over large areas, but comparisons between different sampling strategies are required. Using PRODES deforestation data as a reference, deforestation in the state of Mato Grosso in Brazil from 2005 to 2006 is evaluated using Landsat imagery and a nearly synchronous MODIS dataset. The MODIS-derived deforestation is used to assist in sampling and extrapolation. Three sampling designs are compared according to the estimated deforestation of the entire study area based on simple extrapolation and linear regression models. The results show that stratified sampling for strata construction and sample allocation using the MODIS-derived deforestation hotspots provided more precise estimations than simple random and systematic sampling. Moreover, the relationship between the MODIS-derived and TM-derived deforestation provides a precise estimate of the total deforestation area as well as the distribution of deforestation in each block.

Maturity-Onset Diabetes of the Young: What Do Clinicians Need to Know?

PubMed Central

2015-01-01

Maturity-onset diabetes of the young (MODY) is a monogenic form of diabetes that is characterized by an early onset, autosomal dominant mode of inheritance and a primary defect in pancreatic β-cell function. MODY represents less than 2% of all diabetes cases and is commonly misdiagnosed as type 1 or type 2 diabetes mellitus. At least 13 MODY subtypes with distinct genetic etiologies have been identified to date. A correct genetic diagnosis is important as it often leads to personalized treatment for those with diabetes and enables predictive genetic testing for their asymptomatic relatives. Next-generation sequencing may provide an efficient method for screening mutations in this form of diabetes as well as identifying new MODY genes. In this review, I discuss a current update on MODY in the literatures and cover the studies that have been performed in Korea. PMID:26706916

Verification and Validation of NASA-Supported Enhancements to Decision Support Tools of PECAD

NASA Technical Reports Server (NTRS)

Ross, Kenton W.; McKellip, Rodney; Moore, Roxzana F.; Fendley, Debbie

2005-01-01

This section of the evaluation report summarizes the verification and validation (V&V) of recently implemented, NASA-supported enhancements to the decision support tools of the Production Estimates and Crop Assessment Division (PECAD). The implemented enhancements include operationally tailored Moderate Resolution Imaging Spectroradiometer (MODIS) products and products of the Global Reservoir and Lake Monitor (GRLM). The MODIS products are currently made available through two separate decision support tools: the MODIS Image Gallery and the U.S. Department of Agriculture (USDA) Foreign Agricultural Service (FAS) MODIS Normalized Difference Vegetation Index (NDVI) Database. Both the Global Reservoir and Lake Monitor and MODIS Image Gallery provide near-real-time products through PECAD's CropExplorer. This discussion addresses two areas: 1. Assessments of the standard NASA products on which these enhancements are based. 2. Characterizations of the performance of the new operational products.

Comparison of Sampling Designs for Estimating Deforestation from Landsat TM and MODIS Imagery: A Case Study in Mato Grosso, Brazil

PubMed Central

Zhu, Shanyou; Zhang, Hailong; Liu, Ronggao; Cao, Yun; Zhang, Guixin

2014-01-01

Sampling designs are commonly used to estimate deforestation over large areas, but comparisons between different sampling strategies are required. Using PRODES deforestation data as a reference, deforestation in the state of Mato Grosso in Brazil from 2005 to 2006 is evaluated using Landsat imagery and a nearly synchronous MODIS dataset. The MODIS-derived deforestation is used to assist in sampling and extrapolation. Three sampling designs are compared according to the estimated deforestation of the entire study area based on simple extrapolation and linear regression models. The results show that stratified sampling for strata construction and sample allocation using the MODIS-derived deforestation hotspots provided more precise estimations than simple random and systematic sampling. Moreover, the relationship between the MODIS-derived and TM-derived deforestation provides a precise estimate of the total deforestation area as well as the distribution of deforestation in each block. PMID:25258742

Two decades of satellite observations of AOD over mainland China using ATSR-2, AATSR and MODIS/Terra: data set evaluation and large-scale patterns

NASA Astrophysics Data System (ADS)

de Leeuw, Gerrit; Sogacheva, Larisa; Rodriguez, Edith; Kourtidis, Konstantinos; Georgoulias, Aristeidis K.; Alexandri, Georgia; Amiridis, Vassilis; Proestakis, Emmanouil; Marinou, Eleni; Xue, Yong; van der A, Ronald

2018-02-01

The retrieval of aerosol properties from satellite observations provides their spatial distribution over a wide area in cloud-free conditions. As such, they complement ground-based measurements by providing information over sparsely instrumented areas, albeit that significant differences may exist in both the type of information obtained and the temporal information from satellite and ground-based observations. In this paper, information from different types of satellite-based instruments is used to provide a 3-D climatology of aerosol properties over mainland China, i.e., vertical profiles of extinction coefficients from the Cloud-Aerosol Lidar with Orthogonal Polarization (CALIOP), a lidar flying aboard the Cloud-Aerosol Lidar and Infrared Pathfinder Satellite Observation (CALIPSO) satellite and the column-integrated extinction (aerosol optical depth - AOD) available from three radiometers: the European Space Agency (ESA)'s Along-Track Scanning Radiometer version 2 (ATSR-2), Advanced Along-Track Scanning Radiometer (AATSR) (together referred to as ATSR) and NASA's Moderate Resolution Imaging Spectroradiometer (MODIS) aboard the Terra satellite, together spanning the period 1995-2015. AOD data are retrieved from ATSR using the ATSR dual view (ADV) v2.31 algorithm, while for MODIS Collection 6 (C6) the AOD data set is used that was obtained from merging the AODs obtained from the dark target (DT) and deep blue (DB) algorithms, further referred to as the DTDB merged AOD product. These data sets are validated and differences are compared using Aerosol Robotic Network (AERONET) version 2 L2.0 AOD data as reference. The results show that, over China, ATSR slightly underestimates the AOD and MODIS slightly overestimates the AOD. Consequently, ATSR AOD is overall lower than that from MODIS, and the difference increases with increasing AOD. The comparison also shows that neither of the ATSR and MODIS AOD data sets is better than the other one everywhere. However, ATSR ADV has limitations over bright surfaces which the MODIS DB was designed for. To allow for comparison of MODIS C6 results with previous analyses where MODIS Collection 5.1 (C5.1) data were used, also the difference between the C6 and C5.1 merged DTDB data sets from MODIS/Terra over China is briefly discussed. The AOD data sets show strong seasonal differences and the seasonal features vary with latitude and longitude across China. Two-decadal AOD time series, averaged over all of mainland China, are presented and briefly discussed. Using the 17 years of ATSR data as the basis and MODIS/Terra to follow the temporal evolution in recent years when the environmental satellite Envisat was lost requires a comparison of the data sets for the overlapping period to show their complementarity. ATSR precedes the MODIS time series between 1995 and 2000 and shows a distinct increase in the AOD over this period. The two data series show similar variations during the overlapping period between 2000 and 2011, with minima and maxima in the same years. MODIS extends this time series beyond the end of the Envisat period in 2012, showing decreasing AOD.

MODIS land cover and LAI collection 4 product quality across nine states in the western hemisphere.

Treesearch

Warren B. Cohen; Thomas K. Maiersperger; David P. Turner; William D. Ritts; Dirk Pflugmacher; Robert E. Kennedy; Alan Kirschbaum; Steven W. Running; Marcos Costa; Stith T. Gower

2006-01-01

Global maps of land cover and leaf area index (LAI) derived from the Moderate Resolution Imaging Spectrometer (MODIS) reflectance data are an important resource in studies of global change, but errors in these must be characterized and well understood. Product validation requires careful scaling from ground and related measurements to a grain commensurate with MODIS...

Characterization of seasonal variation of forest canopy in a temperate deciduous broadleaf forest, using daily MODIS data

Treesearch

Qingyuan Zhang; Xiangming Xiao; Bobby Braswell; Ernst Linder; Scott Ollinger; Marie-Louise Smith; Julian P. Jenkins; Fred Baret; Andrew D. Richardson; Berrien III Moore; Rakesh Minocha

2006-01-01

In this paper, we present an improved procedure for collecting no or little atmosphere- and snow-contaminated observations from the Moderate Resolution Imaging Spectroradiometer (MODIS) sensor. The resultant time series of daily MODIS data of a temperate deciduous broadleaf forest (the Bartlett Experimental Forest) in 2004 show strong seasonal dynamics of surface...

Calculations of Aerosol Radiative Forcing in the SAFARI Region from MODIS Data

NASA Technical Reports Server (NTRS)

Remer, L. A.; Ichoku, C.; Kaufman, Y. J.; Chu, D. A.

2003-01-01

SAFARI 2000 provided the opportunity to validate MODIS aerosol retrievals and to correct any assumptions in the retrieval process. By comparing MODIS retrievals with ground-based sunphotometer data, we quantified the degree to which the MODIS algorithm underestimated the aerosol optical thickness. This discrepancy was attributed to underestimating the degree of light absorption by the southern African smoke aerosol. Correcting for this underestimation of absorption, produces more realistic aerosol retrievals that allow various applications of the MODIS aerosol products. One such application is the calculation of the aerosol radiative forcing at the top and bottom of the atmosphere. The combination of MODIS accuracy, coverage, resolution and the ability to separate fine and coarse mode make this calculation substantially advanced over previous attempts with other satellites. We focus on the oceans adjacent to southern Africa and use a solar radiative transfer model to perform the flux calculations. The forcing at the top of atmosphere is calculated to be 10 W/sq m, while the forcing at the surface is -26 W/sq m. These results resemble those calculated from INDOEX data, and are most sensitive to assumptions of aerosol absorption, the same parameter that initially interfered with our retrievals.

Verification and Validation of NASA-Supported Enhancements to PECAD's Decision Support Tools

NASA Technical Reports Server (NTRS)

McKellipo, Rodney; Ross, Kenton W.

2006-01-01

The NASA Applied Sciences Directorate (ASD), part of the Earth-Sun System Division of NASA's Science Mission Directorate, has partnered with the U.S. Department of Agriculture (USDA) to enhance decision support in the area of agricultural efficiency-an application of national importance. The ASD integrated the results of NASA Earth science research into USDA decision support tools employed by the USDA Foreign Agricultural Service (FAS) Production Estimates and Crop Assessment Division (PECAD), which supports national decision making by gathering, analyzing, and disseminating global crop intelligence. Verification and validation of the following enhancements are summarized: 1) Near-real-time Moderate Resolution Imaging Spectroradiometer (MODIS) products through PECAD's MODIS Image Gallery; 2) MODIS Normalized Difference Vegetation Index (NDVI) time series data through the USDA-FAS MODIS NDVI Database; and 3) Jason-1 and TOPEX/Poseidon lake level estimates through PECAD's Global Reservoir and Lake Monitor. Where possible, each enhanced product was characterized for accuracy, timeliness, and coverage, and the characterized performance was compared to PECAD operational requirements. The MODIS Image Gallery and the GRLM are more mature and have achieved a semi-operational status, whereas the USDA-FAS MODIS NDVI Database is still evolving and should be considered

Study on ice cloud optical thickness retrieval with MODIS IR spectral bands

NASA Astrophysics Data System (ADS)

Zhang, Hong; Li, Jun

2005-01-01

The operational Moderate-Resolution Imaging Spectroradiometer (MODIS) products for cloud properties such as cloud-top pressure (CTP), effective cloud amount (ECA), cloud particle size (CPS), cloud optical thickness (COT), and cloud phase (CP) have been available for users globally. An approach to retrieve COT is investigated using MODIS infrared (IR) window spectral bands (8.5 mm, 11mm, and 12 mm). The COT retrieval from MODIS IR bands has the potential to provide microphysical properties with high spatial resolution during night. The results are compared with those from operational MODIS products derived from the visible (VIS) and near-infrared (NIR) bands during day. Sensitivity of COT to MODIS spectral brightness temperature (BT) and BT difference (BTD) values is studied. A look-up table is created from the cloudy radiative transfer model accounting for the cloud absorption and scattering for the cloud microphysical property retrieval. The potential applications and limitations are also discussed. This algorithm can be applied to the future imager systems such as Visible/Infrared Imager/Radiometer Suite (VIIRS) on the National Polar-orbiting Operational Environmental Satellite System (NPOESS) and Advanced Baseline Imager (ABI) on the Geostationary Operational Environmental Satellite (GOES)-R.

Two cases of diabetic ketoacidosis in HNF1A-MODY linked to severe dehydration: is it time to change the diagnostic criteria for MODY?

PubMed

Pruhova, Stepanka; Dusatkova, Petra; Neumann, David; Hollay, Erik; Cinek, Ondrej; Lebl, Jan; Sumnik, Zdenek

2013-09-01

Hepatocyte nuclear factor-1A maturity-onset diabetes of the young (HNF1A-MODY) is a monogenic form of diabetes caused by heterozygous mutations in HNF1A. Currently, a history of diabetic ketoacidosis (DKA) is an exclusion criterion for genetic testing for MODY. In this article, we describe two unrelated patients aged 17 and 24 years with severe DKA developed several years after the diagnosis of HNF1A-MODY. Both patients were treated with insulin, but their metabolic control was poor (HbA1c 15%, 140 mmol/mol and 13%, 119 mmol/mol, respectively) due to noncompliance and missed insulin injections. In both patients, DKA followed a course of recurrent vomiting with dehydration and prerenal acute kidney injury. Their glycemia, blood pH, and base excess at admission were 97 mmol/L [1,748 mg/dL], 6.80, and -33 mmol/L (patient 1) and 34 mmol/L [613 mg/dL], 7.03, and -14 mmol/L (patient 2). This anecdotal observation supports the notion that a history of DKA does not exclude MODY.

Cross-Calibration of Earth Observing System Terra Satellite Sensors MODIS and ASTER

NASA Technical Reports Server (NTRS)

McCorkel, J.

2014-01-01

The Advanced Spaceborne Thermal Emissive and Reflection Radiometer (ASTER) and Moderate Resolution Imaging Spectrometer (MODIS) are two of the five sensors onboard the Earth Observing System's Terra satellite. These sensors share many similar spectral channels while having much different spatial and operational parameters. ASTER is a tasked sensor and sometimes referred to a zoom camera of the MODIS that collects a full-earth image every one to two days. It is important that these sensors have a consistent characterization and calibration for continued development and use of their data products. This work uses a variety of test sites to retrieve and validate intercalibration results. The refined calibration of Collection 6 of the Terra MODIS data set is leveraged to provide the up-to-date reference for trending and validation of ASTER. Special attention is given to spatially matching radiance measurements using prelaunch spatial response characterization of MODIS. Despite differences in spectral band properties and spatial scales, ASTER-MODIS is an ideal case for intercomparison since the sensors have nearly identical views and acquisitions times and therefore can be used as a baseline of intercalibration performance of other satellite sensor pairs.

MODIS Snow-Cover Products

NASA Technical Reports Server (NTRS)

Hall, Dorothy K.; Riggs, George A.; Salomonson, Vinvent V.; DiGirolamo, Nicolo; Bayr, Klaus J.; Houser, Paul (Technical Monitor)

2001-01-01

On December 18, 1999, the Terra satellite was launched with a complement of five instruments including the Moderate Resolution Imaging Spectroradiometer (MODIS). Many geophysical products are derived from MODIS data including global snow-cover products. These products have been available through the National Snow and Ice Data Center (NSIDC) Distributed Active Archive Center (DAAC) since September 13, 2000. MODIS snow-cover products represent potential improvement to the currently available operation products mainly because the MODIS products are global and 500-m resolution, and have the capability to separate most snow and clouds. Also the snow-mapping algorithms are automated which means that a consistent data set is generated for long-term climates studies that require snow-cover information. Extensive quality assurance (QA) information is stored with the product. The snow product suite starts with a 500-m resolution swath snow-cover map which is gridded to the Integerized Sinusoidal Grid to produce daily and eight-day composite tile products. The sequence then proceeds to a climate-modeling grid product at 5-km spatial resolution, with both daily and eight-day composite products. A case study from March 6, 2000, involving MODIS data and field and aircraft measurements, is presented. Near-term enhancements include daily snow albedo and fractional snow cover.

Inter-Annual Variability of Burned Area in Brazil Based on a Synergistic use of Information Derived from MODIS and Landsat-TM

NASA Astrophysics Data System (ADS)

Libonati, R.; Dacamara, C. C.; Setzer, A. W.; Morelli, F.

2014-12-01

A procedure is presented that allows using information from the MODerate resolution Imaging Spectroradiometer (MODIS) sensor to improve the quality of monthly burned area estimates over Brazil. The method integrates MODIS derived information from two sources; the NASA MCD64A1 Direct Broadcast Monthly Burned Area Product and INPE's Monthly Burned Area MODIS product (AQM-MODIS). The latter product relies on an algorithm that was specifically designed for ecosystems in Brazil, taking advantage of the ability of MIR reflectances to discriminate burned areas. Information from both MODIS products is incorporated by means of a linear regression model where an optimal estimate of the burned area is obtained as a linear combination of burned area estimates from MCD64A1 and AQM-MODIS. The linear regression model is calibrated using as optimal estimates values of burned area derived from Landsat TM during 2005 and 2006 over Jalapão, a region of Cerrado covering an area of 187 x 187 km2. Obtained values of coefficients for MCD64A1 and AQM-MODIS were 0.51 and 0.35, respectively and the root mean square error was 7.6 km2. Robustness of the model was checked by calibrating the model separately for 2005 and 2006 and cross-validating with 2006 and 2005; coefficients for 2005 (2006) were 0.46 (0.54) for MCD64A1 and 0.35 (0.35) for AQM-MODIS and the corresponding root mean square errors for 2006 (2005) were 7.8 (7.4) km2. The linear model was then applied to Brazil as well as to the six Brazilian main biomes, namely Cerrado, Amazônia, Caatinga, Pantanal, Mata Atlântica and Pampa. As to be expected the interannual variability based on the proposed synergistic use of MCD64A1, AQM-MODIS and Landsat Tm data for the period 2005-2010 presents marked differences with the corresponding amounts derived from MCD64A1 alone. For instance during the considered period, values (in 103 km2) from the proposed approach (from MCD64A1) are 399 (142), 232 (62), 559 (259), 274 (73), 219 (31) and 415 (251). Values obtained with the proposed approach may be viewed as an improved alternative to the currently available products over Brazil.

Simulating Visible/Infrared Imager Radiometer Suite Normalized Difference Vegetation Index Data Using Hyperion and MODIS

NASA Technical Reports Server (NTRS)

Ross, Kenton W.; Russell, Jeffrey; Ryan, Robert E.

2006-01-01

The success of MODIS (the Moderate Resolution Imaging Spectrometer) in creating unprecedented, timely, high-quality data for vegetation and other studies has created great anticipation for data from VIIRS (the Visible/Infrared Imager Radiometer Suite). VIIRS will be carried onboard the joint NASA/Department of Defense/National Oceanic and Atmospheric Administration NPP (NPOESS (National Polar-orbiting Operational Environmental Satellite System) Preparatory Project). Because the VIIRS instruments will have lower spatial resolution than the current MODIS instruments 400 m versus 250 m at nadir for the channels used to generate Normalized Difference Vegetation Index data, scientists need the answer to this question: how will the change in resolution affect vegetation studies? By using simulated VIIRS measurements, this question may be answered before the VIIRS instruments are deployed in space. Using simulated VIIRS products, the U.S. Department of Agriculture and other operational agencies can then modify their decision support systems appropriately in preparation for receipt of actual VIIRS data. VIIRS simulations and validations will be based on the ART (Application Research Toolbox), an integrated set of algorithms and models developed in MATLAB(Registerd TradeMark) that enables users to perform a suite of simulations and statistical trade studies on remote sensing systems. Specifically, the ART provides the capability to generate simulated multispectral image products, at various scales, from high spatial hyperspectral and/or multispectral image products. The ART uses acquired ( real ) or synthetic datasets, along with sensor specifications, to create simulated datasets. For existing multispectral sensor systems, the simulated data products are used for comparison, verification, and validation of the simulated system s actual products. VIIRS simulations will be performed using Hyperion and MODIS datasets. The hyperspectral and hyperspatial properties of Hyperion data will be used to produce simulated MODIS and VIIRS products. Hyperion-derived MODIS data will be compared with near-coincident MODIS collects to validate both spectral and spatial synthesis, which will ascertain the accuracy of converting from MODIS to VIIRS. MODIS-derived VIIRS data is needed for global coverage and for the generation of time series for regional and global investigations. These types of simulations will have errors associated with aliasing for some scene types. This study will help quantify these errors and will identify cases where high-quality, MODIS-derived VIIRS data will be available.

Monitoring the On-Orbit Calibration of Terra MODIS Reflective Solar Bands Using Simultaneous Terra MISR Observations

NASA Technical Reports Server (NTRS)

Angal, Amit; Xiong, Xiaoxiong; Wu, Aisheng

2016-01-01

On December 18, 2015, the Terra spacecraft completed 16 years of successful operation in space. Terra has five instruments designed to facilitate scientific measurements of the earths land, ocean, and atmosphere. The Moderate Resolution Imaging Spectroradiometer (MODIS) and the Multiangle Imaging Spectroradiometer (MISR) instruments provide information for the temporal studies of the globe. After providing over 16 years of complementary measurements, a synergistic use of the measurements obtained from these sensors is beneficial for various science products. The 20 reflective solar bands (RSBs) of MODIS are calibrated using a combination of solar diffuser and lunar measurements, supplemented by measurements from pseudoinvariant desert sites. MODIS views the on-board calibrators and the earth via a two-sided scan mirror at three spatial resolutions: 250 m using 40 detectors in bands 1 and 2, 500 m using 20 detectors in bands 3 and 4, and 1000 m using 10 detectors in bands 819 and 26. Simultaneous measurements of the earths surface are acquired in a push-broom fashion by MISR at nine view angles spreading out in the forward and backward directions along the flight path. While the swath width for MISR acquisitions is 360 km, MODIS scans a wider swath of 2330 km via its two-sided scan mirror. The reflectance of the MODIS scan mirror has an angle dependence characterized by the response versus scan angle (RVS). Its on-orbit change is derived using the gain from a combination of on-board and earth-view measurements. The on-orbit RVS for MODIS has experienced a significant change, especially for the short-wavelength bands. The on-orbit RVS change for the short-wavelength bands (bands 3, 8, and 9) at nadir is observed to be greater than 10 over the mission lifetime. Due to absence of a scanning mechanism, MISR can serve as an effective tool to evaluate and monitor the on-orbit performance of the MODIS RVS. Furthermore, it can also monitor the detector and scan-mirror differences for the MODIS bands using simultaneous measurements from earth-scene targets, e.g., North Atlantic Ocean and North African desert. Simultaneous measurements provide the benefit of minimizing the impact of earth-scene features while comparing the radiometric performance using vicarious techniques. Long-term observations of both instruments using select ground targets also provide an evaluation of the long-term calibration stability. The goal of this paper is to demonstrate the use of MISR to monitor and enhance the on-orbit calibration of the MODIS RSB. The radiometric calibration requirements for the MODIS RSB are +/- 2% in reflectance and +/- 5% in radiance at typical radiance levels within +/- 45 deg. of nadir. The results show that the long-term changes in the MODIS reflectance at nadir frames are generally within 1. The MODIS level 1B calibrated products, generated after correcting for the on-orbit changes in the gain and RVS, do not have any correction for changes in the instruments polarization sensitivity. The mirror-side-dependent polarization sensitivity exhibits an on-orbit change, primarily in the blue bands, that manifests in noticeable mirror side differences in the MODIS calibrated products. The mirror side differences for other RSB are observed to be less than 1%, therefore demonstrating an excellent on-orbit performance. The detector differences in the blue bands of MODIS exhibit divergence in recent years beyond 1%, and a calibration algorithm improvement has been identified to mitigate this effect. Short-term variations in the recent year caused by the forward updates were identified in bands 1 and 2 and are planned to be corrected in the next reprocess.

Impact of MODIS Sensor Calibration Updates on Greenland Ice Sheet Surface Reflectance and Albedo Trends

NASA Technical Reports Server (NTRS)

Casey, Kimberly A.; Polashenski, Chris M.; Chen, Justin; Tedesco, Marco

2017-01-01

We evaluate Greenland Ice Sheet (GrIS) surface reflectance and albedo trends using the newly released Collection 6 (C6) MODIS (Moderate Resolution Imaging Spectroradiometer) products over the period 2001-2016. We find that the correction of MODIS sensor degradation provided in the new C6 data products reduces the magnitude of the surface reflectance and albedo decline trends obtained from previous MODIS data (i.e., Collection 5, C5). Collection 5 and 6 data product analysis over GrIS is characterized by surface (i.e., wet vs. dry) and elevation (i.e., 500-2000 m, 2000 m and greater) conditions over the summer season from 1 June to 31 August. Notably, the visible-wavelength declining reflectance trends identified in several bands of MODIS C5 data from previous studies are only slightly detected at reduced magnitude in the C6 versions over the dry snow area. Declining albedo in the wet snow and ice area remains over the MODIS record in the C6 product, albeit at a lower magnitude than obtained using C5 data. Further analyses of C6 spectral reflectance trends show both reflectance increases and decreases in select bands and regions, suggesting that several competing processes are contributing to Greenland Ice Sheet albedo change. Investigators using MODIS data for other ocean, atmosphere and/or land analyses are urged to consider similar re-examinations of trends previously established using C5 data.

A web-based subsetting service for regional scale MODIS land products

DOE Office of Scientific and Technical Information (OSTI.GOV)

SanthanaVannan, Suresh K; Cook, Robert B; Holladay, Susan K

2009-12-01

The Moderate Resolution Imaging Spectroradiometer (MODIS) sensor has provided valuable information on various aspects of the Earth System since March 2000. The spectral, spatial, and temporal characteristics of MODIS products have made them an important data source for analyzing key science questions relating to Earth System processes at regional, continental, and global scales. The size of the MODIS product and native HDF-EOS format are not optimal for use in field investigations at individual sites (100 - 100 km or smaller). In order to make MODIS data readily accessible for field investigations, the NASA-funded Distributed Active Archive Center (DAAC) for Biogeochemicalmore » Dynamics at Oak Ridge National Laboratory (ORNL) has developed an online system that provides MODIS land products in an easy-to-use format and in file sizes more appropriate to field research. This system provides MODIS land products data in a nonproprietary comma delimited ASCII format and in GIS compatible formats (GeoTIFF and ASCII grid). Web-based visualization tools are also available as part of this system and these tools provide a quick snapshot of the data. Quality control tools and a multitude of data delivery options are available to meet the demands of various user communities. This paper describes the important features and design goals for the system, particularly in the context of data archive and distribution for regional scale analysis. The paper also discusses the ways in which data from this system can be used for validation, data intercomparison, and modeling efforts.« less

Annual Corn Yield Estimation through Multi-temporal MODIS Data

NASA Astrophysics Data System (ADS)

Shao, Y.; Zheng, B.; Campbell, J. B.

2013-12-01

This research employed 13 years of the Moderate Resolution Imaging Spectroradiometer (MODIS) to estimate annual corn yield for the Midwest of the United States. The overall objective of this study was to examine if annual corn yield could be accurately predicted using MODIS time-series NDVI (Normalized Difference Vegetation Index) and ancillary data such monthly precipitation and temperature. MODIS-NDVI 16-Day composite images were acquired from the USGS EROS Data Center for calendar years 2000 to 2012. For the same time-period, county level corn yield statistics were obtained from the National Agricultural Statistics Service (NASS). The monthly precipitation and temperature measures were derived from Precipitation-Elevation Regressions on Independent Slopes Model (PRISM) climate data. A cropland mask was derived using 2006 National Land Cover Database. For each county and within the cropland mask, the MODIS-NDVI time-series data and PRISM climate data were spatially averaged, at their respective time steps. We developed a random forest predictive model with the MODIS-NDVI and climate data as predictors and corn yield as response. To assess the model accuracy, we used twelve years of data as training and the remaining year as hold-out testing set. The training and testing procedures were repeated 13 times. The R2 ranged from 0.72 to 0.83 for testing years. It was also found that the inclusion of climate data did not improve the model predictive performance. MODIS-NDVI time-series data alone might provide sufficient information for county level corn yield prediction.

Using the Moon to Track MODIS Reflective Solar Bands Calibration Stability

NASA Technical Reports Server (NTRS)

Xiong, Xiaoxiong; Geng, Xu; Angal, Amit; Sun, Junqiang; Barnes, William

2011-01-01

MODIS has 20 reflective solar bands (RSB) in the visible (VIS), near infrared (NIR), and short-wave infrared (SWIR) spectral regions. In addition to instrument on-board calibrators (OBC), lunar observations have been used by both Terra and Aqua MODIS to track their reflective solar bands (RSB) on-orbit calibration stability. On a near monthly basis, lunar observations are scheduled and implemented for each instrument at nearly the same lunar phase angles. A time series of normalized detector responses to the Moon is used to monitor its on-orbit calibration stability. The normalization is applied to correct the differences of lunar viewing geometries and the Sun-Moon-Sensor distances among different lunar observations. Initially, the lunar calibration stability monitoring was only applied to MODIS bands (1-4 and 8-12) that do not saturate while viewing the Moon. As the mission continued, we extended the lunar calibration stability monitoring to other RSB bands (bands 13-16) that contain saturated pixels. For these bands, the calibration stability is monitored by referencing their non-saturated pixels to the matched pixels in a non-saturation band. In this paper, we describe this relative approach and apply it to MODIS regularly scheduled lunar observations. We present lunar trending results for both Terra and Aqua MODIS over their entire missions. Also discussed in the paper are the advantages and limitations of this approach and its potential applications to other earth-observing sensors. Keywords: Terra, Aqua, MODIS, sensor, Moon, calibration, stability

Genetic Testing of Maturity-Onset Diabetes of the Young Current Status and Future Perspectives

PubMed Central

Firdous, Parveena; Nissar, Kamran; Ali, Sajad; Ganai, Bashir Ahmad; Shabir, Uzma; Hassan, Toyeeba; Masoodi, Shariq Rashid

2018-01-01

Diabetes is a global epidemic problem growing exponentially in Asian countries posing a serious threat. Among diabetes, maturity-onset diabetes of the young (MODY) is a heterogeneous group of monogenic disorders that occurs due to β cell dysfunction. Genetic defects in the pancreatic β-cells result in the decrease of insulin production required for glucose utilization thereby lead to early-onset diabetes (often <25 years). It is generally considered as non-insulin dependent form of diabetes and comprises of 1–5% of total diabetes. Till date, 14 genes have been identified and mutation in them may lead to MODY. Different genetic testing methodologies like linkage analysis, restriction fragment length polymorphism, and DNA sequencing are used for the accurate and correct investigation of gene mutations associated with MODY. The next-generation sequencing has emerged as one of the most promising and effective tools to identify novel mutated genes related to MODY. Diagnosis of MODY is mainly relying on the sequential screening of the three marker genes like hepatocyte nuclear factor 1 alpha (HNF1α), hepatocyte nuclear factor 4 alpha (HNF4α), and glucokinase (GCK). Interestingly, MODY patients can be managed by diet alone for many years and may also require minimal doses of sulfonylureas. The primary objective of this article is to provide a review on current status of MODY, its prevalence, genetic testing/diagnosis, possible treatment, and future perspective. PMID:29867778

MODIS Direct Broadcast and Remote Sensing Applications

NASA Technical Reports Server (NTRS)

Tsay, Si-Chee

2004-01-01

The Moderate Resolution Imaging Spectroradiometer (MODIS) was developed by NASA and launched onboard both Terra spacecraft on December 18, 1999 and Aqua spacecraft on May 4, 2002. MODIS scans a swath width sufficient to provide nearly complete global coverage every two days from a polar-orbiting, sun-synchronous, platform at an altitude of 705 km, and provides images in 36 spectral bands between 0.415 and 14.235 microns with spatial resolutions of 250 m (2 bands), 500 m (5 bands) and 1000 m (29 bands). Equipped with direct broadcast capability, the MODIS measurements can be received worldwide real time. There are 82 ingest sites (over 900 users, listed on the Direct Readout Portal) around the world for Terra/Aqua-MODIS Direct Broadcast DB) downlink. This represents 27 (6 from EOS science team members) science research organizations for DB land, ocean and atmospheric processing, and 53 companies that base their application algorithms and value added products on DB data. In this paper we will describe the various methods being used for the remote sensing of cloud properties using MODIS data, focusing primarily on the MODIS cloud mask used to distinguish clouds, clear sky, heavy aerosol, and shadows on the ground, and on the remote sensing of aerosol/cloud optical properties, especially optical thickness and effective particle size. Additional properties of clouds derived from multispectral thermal infrared measurements, especially cloud top pressure and emissivity, will also be described. Preliminary results will be presented and discussed their implications in regional-to-global climatic effects.

Ten Years of Cloud Properties from MODIS: Global Statistics and Use in Climate Model Evaluation

NASA Technical Reports Server (NTRS)

Platnick, Steven E.

2011-01-01

The NASA Moderate Resolution Imaging Spectroradiometer (MODIS), launched onboard the Terra and Aqua spacecrafts, began Earth observations on February 24, 2000 and June 24,2002, respectively. Among the algorithms developed and applied to this sensor, a suite of cloud products includes cloud masking/detection, cloud-top properties (temperature, pressure), and optical properties (optical thickness, effective particle radius, water path, and thermodynamic phase). All cloud algorithms underwent numerous changes and enhancements between for the latest Collection 5 production version; this process continues with the current Collection 6 development. We will show example MODIS Collection 5 cloud climatologies derived from global spatial . and temporal aggregations provided in the archived gridded Level-3 MODIS atmosphere team product (product names MOD08 and MYD08 for MODIS Terra and Aqua, respectively). Data sets in this Level-3 product include scalar statistics as well as 1- and 2-D histograms of many cloud properties, allowing for higher order information and correlation studies. In addition to these statistics, we will show trends and statistical significance in annual and seasonal means for a variety of the MODIS cloud properties, as well as the time required for detection given assumed trends. To assist in climate model evaluation, we have developed a MODIS cloud simulator with an accompanying netCDF file containing subsetted monthly Level-3 statistical data sets that correspond to the simulator output. Correlations of cloud properties with ENSO offer the potential to evaluate model cloud sensitivity; initial results will be discussed.

Scaling Gross Primary Production (GPP) over boreal and deciduous forest landscapes in support of MODIS GPP product validation.

Treesearch

David P. Turner; William D. Ritts; Warren B. Cohen; Stith T. Gower; Maosheng Zhao; Steve W. Running; Steven C. Wofsy; Shawn Urbanski; Allison L. Dunn; J.W. Munger

2003-01-01

The Moderate Resolution Imaging Radiometer (MODIS) is the primary instrument in the NASA Earth Observing System for monitoring the seasonality of global terrestrial vegetation. Estimates of 8-day mean daily gross primary production (GPP) at the 1 km spatial resolution are now operationally produced by the MODIS Land Science Team for the global terrestrial surface using...

Optimal Grid Size for Inter-Comparability of MODIS And VIIRS Vegetation Indices at Level 2G or Higher

NASA Astrophysics Data System (ADS)

Campagnolo, M.; Schaaf, C.

2016-12-01

Due to the necessity of time compositing and other user requirements, vegetation indices, as well as many other EOS derived products, are distributed in a gridded format (level L2G or higher) using an equal area sinusoidal grid, at grid sizes of 232 m, 463 m or 926 m. In this process, the actual surface signal suffers somewhat of a degradation, caused by both the sensor's point spread function and this resampling from swath to the regular grid. The magnitude of that degradation depends on a number of factors, such as surface heterogeneity, band nominal resolution, observation geometry and grid size. In this research, the effect of grid size is quantified for MODIS and VIIRS (at five EOS validation sites with distinct land covers), for the full range of view zenith angles, and at grid sizes of 232 m, 253 m, 309 m, 371 m, 397 m and 463 m. This allows us to compare MODIS and VIIRS gridded products for the same scenes, and to determine the grid size at which these products are most similar. Towards that end, simulated MODIS and VIIRS bands are generated from Landsat 8 surface reflectance images at each site and gridded products are then derived by using maximum obscov resampling. Then, for every grid size, the original Landsat 8 NDVI and the derived MODIS and VIIRS NDVI products are compared. This methodology can be applied to other bands and products, to determine which spatial aggregation overall is best suited for EOS to S-NPP product continuity. Results for MODIS (250 m bands) and VIIRS (375 m bands) NDVI products show that finer grid sizes tend to be better at preserving the original signal. Significant degradation for gridded NDVI occurs when grid size is larger then 253 m (MODIS) and 371 m (VIIRS). Our results suggest that current MODIS "500 m" (actually 463 m) grid size is best for product continuity. Note however, that up to that grid size value, MODIS gridded products are somewhat better at preserving the surface signal than VIIRS, except for at very high VZA.

Mapping Snow Grain Size over Greenland from MODIS

NASA Technical Reports Server (NTRS)

Lyapustin, Alexei; Tedesco, Marco; Wang, Yujie; Kokhanovsky, Alexander

2008-01-01

This paper presents a new automatic algorithm to derive optical snow grain size (SGS) at 1 km resolution using Moderate Resolution Imaging Spectroradiometer (MODIS) measurements. Differently from previous approaches, snow grains are not assumed to be spherical but a fractal approach is used to account for their irregular shape. The retrieval is conceptually based on an analytical asymptotic radiative transfer model which predicts spectral bidirectional snow reflectance as a function of the grain size and ice absorption. The analytical form of solution leads to an explicit and fast retrieval algorithm. The time series analysis of derived SGS shows a good sensitivity to snow metamorphism, including melting and snow precipitation events. Preprocessing is performed by a Multi-Angle Implementation of Atmospheric Correction (MAIAC) algorithm, which includes gridding MODIS data to 1 km resolution, water vapor retrieval, cloud masking and an atmospheric correction. MAIAC cloud mask (CM) is a new algorithm based on a time series of gridded MODIS measurements and an image-based rather than pixel-based processing. Extensive processing of MODIS TERRA data over Greenland shows a robust performance of CM algorithm in discrimination of clouds over bright snow and ice. As part of the validation analysis, SGS derived from MODIS over selected sites in 2004 was compared to the microwave brightness temperature measurements of SSM\\I radiometer, which is sensitive to the amount of liquid water in the snowpack. The comparison showed a good qualitative agreement, with both datasets detecting two main periods of snowmelt. Additionally, MODIS SGS was compared with predictions of the snow model CROCUS driven by measurements of the automatic whether stations of the Greenland Climate Network. We found that CROCUS grain size is on average a factor of two larger than MODIS-derived SGS. Overall, the agreement between CROCUS and MODIS results was satisfactory, in particular before and during the first melting period in mid-June. Following detailed time series analysis of SGS for four permanent sites, the paper presents SGS maps over the Greenland ice sheet for the March-September period of 2004.

Evaluating NASA S-NPP continuity cloud products for climate research using CALIPSO, CATS and Level-3 analysis

NASA Astrophysics Data System (ADS)

Holz, R.; Platnick, S. E.; Meyer, K.; Frey, R.; Wind, G.; Ackerman, S. A.; Heidinger, A. K.; Botambekov, D.; Yorks, J. E.; McGill, M. J.

2016-12-01

The launch of VIIRS and CrIS on Suomi NPP in the fall of 2011 introduced the next generation of U.S. operational polar orbiting environmental observations. Similar to MODIS, VIIRS provides visible and IR observations at moderate spatial resolution and has a 1:30 pm equatorial crossing time consistent with the MODIS on Aqua platform. However unlike MODIS, VIIRS lacks water vapor and CO2 absorbing channels that are used by the MODIS cloud algorithms for both cloud detection and to retrieve cloud top height and cloud emissivity for ice clouds. Given the different spectral and spatial characteristics of VIIRS, we seek to understand the extent to which the 15-year MODIS climate record can be continued with VIIRS/CrIS observations while maintaining consistent sensitivities across the observational systems. This presentation will focus on the evaluation of the latest version of the NASA funded cloud retrieval algorithms being developed for climate research. We will present collocated inter-comparisons between the imagers (VIIRS and MODIS Aqua) with CALIPSO and Cloud Aerosol Transport System (CATS) lidar observations as well as long term statistics based on a new Level-3 (L3) product being developed as part the project. The CALIPSO inter-comparisons will focus on cloud detection (cloud mask) with a focus on the impact of recent modifications to the cloud mask and how these changes impact the global statistics. For the first time we will provide inter-comparisons between two different cloud lidar systems (CALIOP and CATS) and investigate how the different sensitivities of the lidars impact the cloud mask and cloud comparisons. Using CALIPSO and CATS as the reference, and applying the same algorithms to VIIRS and MODIS, we will discuss the consistency between products from both imagers. The L3 analysis will focus on the regional and seasonal consistency between the suite of MODIS and VIIRS continuity cloud products. Do systematic biases remains when using consistent algorithms but applied to different observations (MODIS or VIIRS)?

The Generation of Near-Real Time Data Products for MODIS

NASA Astrophysics Data System (ADS)

Teague, M.; Schmaltz, J. E.; Ilavajhala, S.; Ye, G.; Masuoka, E.; Murphy, K. J.; Michael, K.

2010-12-01

The GSFC Terrestrial Information Systems Branch (614.5) operate the Land and Atmospheres Near-real-time Capability for EOS (LANCE-MODIS) system. Other LANCE elements include -AIRS, -MLS, -OMI, and -AMSR-E. LANCE-MODIS incorporates the former Rapid Response system and will, in early 2011, include the Fire Information for Resource Management System (FIRMS). The purpose of LANCE is to provide applications users with a variety of products on a near-real time basis. The LANCE-MODIS data products include Level 1 (L1), L2 fire, snow, sea ice, cloud mask/profiles, aerosols, clouds, land surface reflectance, land surface temperature, and L2G and L3 gridded, daily, land surface reflectance products. Data are available either by ftp access (pull) or by subscription (push) and the L1 and L2 data products are available within an average of 2.5 hours of the observation time. The use of ancillary data products input to the standard science algorithms has been modified in order to obtain these latencies. The resulting products have been approved for applications use by the MODIS Science Team. The http://lance.nasa.gov site provides registration information and extensive information concerning the MODIS data products and imagery including a comparison between the LANCE-MODIS and the standard science-quality products generated by the MODAPS system. The LANCE-MODIS system includes a variety of tools that enable users to manipulate the data products including: parameter, band, and geographic subsetting, re-projection, mosaicing, and generation of data in the GeoTIFF format. In most instances the data resulting from use of these tools has a latency of less than 3 hours. Access to these tools is available through a Web Coverage Service. A Google Earth/Web Mapping Service is available to access image products. LANCE-MODIS supports a wide variety of applications users in civilian, military, and foreign agencies as well as universities and the private sector. Examples of applications are: Flood Mapping, Famine relief, Food and Agriculture, Hazards and Disasters, and Weather.

Remote Sensing of Aerosol Over the Land from the Earth Observing System MODIS Instrument

NASA Technical Reports Server (NTRS)

Kaufman, Yoram; Tanre, Didier; Remer, Lorraine; Einaudi, Franco (Technical Monitor)

2000-01-01

On Dec 18, 1999, NASA launched the Moderate-Resolution Imaging Spectroradiometer (MODIS) instrument on the Earth Observing System (EOS) Terra mission, in a spectacular launch. The mission will provide morning (10:30 AM) global observations of aerosol and other related parameters. It will be followed a year later by a MODIS instrument on EOS Aqua for afternoon observations (1:30 PM). MODIS will measure aerosol over land and ocean with its eight 500 m and 250 m channels in the solar spectrum (0-41 to 2.2 micrometers). Over the land MODIS will measure the total column aerosol loading, and distinguish between submicron pollution particles and large soil particles. Standard daily products of resolution of ten kilometers and global mapped eight day and monthly products on a 1x1 degree global scale will be produced routinely and make available for no or small reproduction charge to the international community. Though the aerosol products will not be available everywhere over the land, it is expected that they will be useful for assessments of the presence, sources and transport of urban pollution, biomass burning aerosol, and desert dust. Other measurements from MODIS will supplement the aerosol information, e.g., land use change, urbanization, presence and magnitude of biomass burning fires, and effect of aerosol on cloud microphysics. Other instruments on Terra, e.g. Multi-angle Imaging SpectroRadiometer (MISR) and the Clouds and the Earth's Radiant Energy System (CERES), will also measure aerosol, its properties and radiative forcing in tandem with the MODIS measurements. During the Aqua period, there are plans to launch in 2003 the Pathfinder Instruments for Cloud and Aerosol Spaceborne Observations (PICASSO) mission for global measurements of the aerosol vertical structure, and the PARASOL mission for aerosol characterization. Aqua-MODIS, PICASSO and PARASOL will fly in formation for detailed simultaneous characterization of the aerosol three-dimensional field, which will feed and evaluate global aerosol transport and climate models. In this talk, some examples of the MODIS measurements will be shown.

Validation of MODIS Aerosol Optical Depth Retrievals over a Tropical Urban Site, Pune, India

NASA Technical Reports Server (NTRS)

More, Sanjay; Kuman, P. Pradeep; Gupta, Pawan; Devara, P. C. S.; Aher, G. R.

2011-01-01

In the present paper, MODIS (Terra and Aqua; level 2, collection 5) derived aerosoloptical depths (AODs) are compared with the ground-based measurements obtained from AERONET (level 2.0) and Microtops - II sun-photometer over a tropical urban station, Pune (18 deg 32'N; 73 deg 49'E, 559 m amsl). This is the first ever systematic validation of the MODIS aerosol products over Pune. Analysis of the data indicates that the Terra and Aqua MODIS AOD retrievals at 550 nm have good correlations with the AERONET and Microtops - II sun-photometer AOD measurements. During winter the linear regression correlation coefficients for MODIS products against AERONET measurements are 0.79 for Terra and 0.62 for Aqua; however for premonsoon, the corresponding coefficients are 0.78 and 0.74. Similarly, the linear regression correlation coefficients for Microtops measurements against MODIS products are 0.72 and 0.93 for Terra and Aqua data respectively during winter and are 0.78 and 0.75 during pre-monsoon. On yearly basis in 2008-2009, correlation coefficients for MODIS products against AERONET measurements are 0.80 and 0.78 for Terra and Aqua respectively while the corresponding coefficients are 0.70 and 0.73 during 2009-2010. The regressed intercepts with MODIS vs. AERONET are 0.09 for Terra and 0.05 for Aqua during winter whereas their values are 0.04 and 0.07 during pre-monsoon. However, MODIS AODs are found to underestimate during winter and overestimate during pre-monsoon with respect to AERONET and Microtops measurements having slopes 0.63 (Terra) and 0.74 (Aqua) during winter and 0.97 (Terra) and 0.94 (Aqua) during pre-monsoon. Wavelength dependency of Single Scattering Albedo (SSA) shows presence of absorbing and scattering aerosol particles. For winter, SSA decreases with wavelength with the values 0.86 +/- 0.03 at 440 nm and 0.82 +/- 0.04 at 1020nm. In pre-monsoon, it increases with wavelength (SSA is 0.87 +/- 0.02 at 440nm; and 0.88 +/-0.04 at 1020 nm).

HNF1α defect influences post-prandial lipid regulation

PubMed Central

St-Jean, Matthieu; Boudreau, François; Carpentier, André C.

2017-01-01

Purpose Hepatocyte nuclear factor 1 alpha (HNF1α) defects cause Mature Onset Diabetes of the Young type 3 (MODY3), characterized by defects in beta-cell insulin secretion. However, HNF1α is involved in many other metabolic pathways with relevance for monogenic or polygenic type 2 diabetes. We aimed to investigate gut hormones, lipids, and insulin regulation in response to a meal test in HNF1α defect carriers (MODY3) compared to non-diabetic subjects (controls) and type 2 diabetes (T2D). Methods We administered a standardized liquid meal to each participant. Over 6 hours, we measured post-meal responses of insulin regulation (blood glucose, c-peptide, insulin), gut hormones (ghrelin, glucose-dependent insulinotropic polypeptide, glucagon-like peptide-1) and lipids (non-esterified fatty acids [NEFA] and triglycerides). Results We found that MODY3 participants had lower insulin secretion indices than controls and T2D participants, showing the expected β-cell defect. MODY3 had similar glycated hemoglobin levels (HbA1c median [IQR]: 6.5 [5.6–7.6]%) compared to T2D (median: 6.6 [6.2–6.9]%; P<0.05). MODY3 had greater insulin sensitivity (Matsuda index: 71.9 [29.6; 125.5]) than T2D (3.2 [4.0; 6.0]; P<0.05). MODY3 experienced a larger decrease in the ratio of NEFA to insulin (NEFA 30–0 / insulin 30–0: -39 [-78; -30] x104) in the early post-prandial period (0–30 minutes) compared to controls and to T2D (-2.0 [-0.6; -6.4] x104; P<0.05). MODY3 had lower fasting (0.66 [0.46; 1.2] mM) and post-meal triglycerides levels compared to T2D (fasting: 2.3 [1.7; 2.7] mM; P<0.05). We did not detect significant post-meal differences in ghrelin and incretins between MODY3 and other groups. Conclusion In response to a standard meal test, MODY3 showed greater early post-prandial NEFA diminution in response to relatively low early insulin secretion, and they maintained very low post-prandial triglycerides levels. PMID:28493909

Evaluation of Aerosol Properties over Ocean from Moderate Resolution Imaging Spectroradiometer (MODIS) during ACE-Asia

NASA Technical Reports Server (NTRS)

Chu, D. A.; Remer, L. A.; Kaufman, Y. J.; Schmid, B.; Redemann, J.; Knobelspiesse, K.; Chern, J.-D.; Livingston, J.; Russell, P. B.; Xiong, X.;

Comparasion of Cloud Cover restituted by POLDER and MODIS

NASA Astrophysics Data System (ADS)

Zeng, S.; Parol, F.; Riedi, J.; Cornet, C.; Thieuxleux, F.

2009-04-01

PARASOL and AQUA are two sun-synchronous orbit satellites in the queue of A-Train satellites that observe our earth within a few minutes apart from each other. Aboard these two platforms, POLDER and MODIS provide coincident observations of the cloud cover with very different characteristics. These give us a good opportunity to study the clouds system and evaluate strengths and weaknesses of each dataset in order to provide an accurate representation of global cloud cover properties. This description is indeed of outermost importance to quantify and understand the effect of clouds on global radiation budget of the earth-atmosphere system and their influence on the climate changes. We have developed a joint dataset containing both POLDER and MODIS level 2 cloud products collocated and reprojected on a common sinusoidal grid in order to make the data comparison feasible and veracious. Our foremost work focuses on the comparison of both spatial distribution and temporal variation of the global cloud cover. This simple yet critical cloud parameter need to be clearly understood to allow further comparison of the other cloud parameters. From our study, we demonstrate that on average these two sensors both detect the clouds fairly well. They provide similar spatial distributions and temporal variations:both sensors see high values of cloud amount associated with deep convection in ITCZ, over Indonesia, and in west-central Pacific Ocean warm pool region; they also provide similar high cloud cover associated to mid-latitude storm tracks, to Indian monsoon or to the stratocumulus along the west coast of continents; on the other hand small cloud amounts that typically present over subtropical oceans and deserts in subsidence aeras are well identified by both POLDER and MODIS. Each sensor has its advantages and inconveniences for the detection of a particular cloud types. With higher spatial resolution, MODIS can better detect the fractional clouds thus explaining as one part of a positive bias in any latitude and in any viewing angle with an order of 10% between the POLDER cloud amount and the so-called MODIS "combined" cloud amount. Nevertheless it is worthy to note that a negative bias of about 10% is obtained between the POLDER cloud amount and the MODIS "day-mean" cloud amount. Main differences between the two MODIS cloud amount values are known to be due to the filtering of remaining aerosols or cloud edges. due to both this high spatial resolution of MODIS and the fact that "combined" cloud amount filters cloud edges, we can also explain why appear the high positive bias regions over subtropical ocean in south hemisphere and over east Africa in summer. Thanks to several channels in the thermal infrared spectral domain, MODIS detects probably much better the thin cirrus especially over land, thus causing a general negative bias for ice clouds. The multi-spectral capability of MODIS also allows for a better detection of low clouds over snow or ice, Hence the (POLDER-MODIS) cloud amount difference is often negative over Greenland, Antarctica, and over the continents at middle-high latitudes in spring and autumn associated to the snow coverage. The multi-spectral capability of MODIS also makes the discrimination possible between the biomass burning aerosols and the fractional clouds over the continents. Thus a positive bias appears in central Africa in summer and autumn associated to important biomass burning events. Over transition region between desert and non-desert, the presence of large negative bias (POLDER-MODIS) of cloud amount maybe partly due to MODIS pixel falsely labeled the desert as cloudy, where MODIS algorithm uses static desert mask. This is clearly highlighted in south of Sahara in spring and summer where we find a bias negative with an order of -0.1. What is more, thanks to its multi-angular capability, POLDER can discriminate the sun-glint region thus minimizing the dependence of cloud amount on view angle. It makes the detection of high clouds easier over a black surface thanks to its polarization character.

Measurement Comparisons Towards Improving the Understanding of Aerosol-Cloud Processing

NASA Astrophysics Data System (ADS)

Noble, Stephen R.

Cloud processing of aerosol is an aerosol-cloud interaction that is not heavily researched but could have implications on climate. The three types of cloud processing are chemical processing, collision and coalescence processing, and Brownian capture of interstitial particles. All types improve cloud condensation nuclei (CCN) in size or hygroscopicity (kappa). These improved CCN affect subsequent clouds. This dissertation focuses on measurement comparisons to improve our observations and understanding of aerosol-cloud processing. Particle size distributions measured at the continental Southern Great Plains (SGP) site were compared with ground based measurements of cloud fraction (CF) and cloud base altitude (CBA). Particle size distributions were described by a new objective shape parameter to define bimodality rather than an old subjective one. Cloudy conditions at SGP were found to be correlated with lagged shape parameter. Horizontal wind speed and regional CF explained 42%+ of this lag time. Many of these surface particle size distributions were influenced by aerosol-cloud processing. Thus, cloud processing may be more widespread with more implications than previously thought. Particle size distributions measured during two aircraft field campaigns (MArine Stratus/stratocumulus Experiment; MASE; and Ice in Cloud Experiment-Tropical; ICE-T) were compared to CCN distributions. Tuning particle size to critical supersaturation revealed hygroscopicity expressed as ? when the distributions were overlain. Distributions near cumulus clouds (ICE-T) had a higher frequency of the same ?s (48% in ICE-T to 42% in MASE) between the accumulation (processed) and Aitken (unprocessed) modes. This suggested physical processing domination in ICE-T. More MASE (stratus cloud) kappa differences between modes pointed to chemical cloud processing. Chemistry measurements made in MASE showed increases in sulfates and nitrates with distributions that were more processed. This supported chemical cloud processing in MASE. This new method to determine kappa provides the needed information without interrupting ambient measurements. MODIS derived cloud optical thickness (COT), cloud liquid water path (LWP), and cloud effective radius (re) were compared to the same in situ derived variables from cloud probe measurements of two stratus/stratocumulus cloud campaigns (MASE and Physics Of Stratocumulus Tops; POST). In situ data were from complete vertical cloud penetrations, while MODIS data were from pixels along the aircraft penetration path. Comparisons were well correlated except that MODIS LWP (14-36%) and re (20-30%) were biased high. The LWP bias was from re bias and was not improved by using the vertically stratified assumption. MODIS re bias was almost removed when compared to cloud top maximum in situ re, but, that does not describe re for the full depth of the cloud. COT is validated by in situ COT. High correlations suggest that MODIS variables are useful in self-comparisons such as gradient changes in stratus cloud re during aerosol-cloud processing.

Influence of Humidity On the Aerosol Scattering Coefficient and Its Effect on the Upwelling Radiance During ACE-2

NASA Technical Reports Server (NTRS)

Gasso, S.; Hegg, D. A.; Covert, D. S.; Collins, D.; Noone, K. J.; Oestroem, E.; Schmid, B.; Russell, P. B.; Livingston, J. M.; Durkee, P. A.

2000-01-01

Aerosol scattering coefficients (sigma(sub sp)) have been measured over the ocean at different relative humidities (RH) as a function of altitude in the region surrounding the Canary Islands during the Second Aerosol Characterization Experiment (ACE-2) in June and July 1997. The data were collected by the University of Washington passive humidigraph (UWPH) mounted on the Pelican research aircraft. Concurrently, particle size distributions, absorption coefficients and aerosol optical depth were measured throughout 17 flights. A parameterization of sigma(sub sp) as a function of RH was utilized to assess the impact of aerosol hydration on the upwelling radiance (normalized to the solar constant and cosine of zenith angle). The top of the atmosphere radiance signal was simulated at wavelengths corresponding to visible and near-infrared bands of the EOS (Earth Observing System) AM-1 (Terra) detectors, MODIS (Moderate Resolution Imaging Spectroradiometer) and MISR (Multi-angle Imaging Spectroradiometer). The UWPH measured sigma(sub sp) at two RHs, one below and the other above ambient conditions. Ambient sigma(sub sp) was obtained by interpolation of these two measurements. The data were stratified in terms of three types of aerosols: Saharan dust, clean marine (marine boundary layer background) and polluted marine aerosols (i.e., two- or one-day old polluted aerosols advected from Europe). An empirical relation for the dependence of sigma(sub sp) on RH, defined by sigma(sub sp)(RH) = k.(1 - RH/100)(sup gamma), was used with the hygroscopic exponent gamma derived from the data. The following gamma values were obtained for the 3 aerosol types: gamma(dust) = 0.23 +/- 0.05, gamma(clean marine) = 0.69 +/- 0.06 and gamma(polluted marine) = 0.57 +/- 0.06. Based on the measured gammas, the above equation was utilized to derive aerosol models with different hygroscopicities. The satellite simulation signal code 6S was used to compute the upwelling radiance corresponding to each of those aerosol models at several ambient humidities. For the prelaunch estimated precision of the sensors and the assumed viewing geometry of the instrument, the simulations suggest that the spectral and angular dependence of the reflectance measured by MISR is not sufficient to distinguish aerosol models with various different combinations of values for dry composition, gamma and ambient RH. A similar behavior is observed for MODIS at visible wavelengths. However, the 2100 nm band of MODIS appears to be able to differentiate between at least same aerosol models with different aerosol hygroscopicity given the MODIS calibration error requirements. This result suggests the possibility of retrieval of aerosol hygroscopicity by MODIS.

An Efficient Approach for Pixel Decomposition to Increase the Spatial Resolution of Land Surface Temperature Images from MODIS Thermal Infrared Band Data

PubMed Central

Wang, Fei; Qin, Zhihao; Li, Wenjuan; Song, Caiying; Karnieli, Arnon; Zhao, Shuhe

2015-01-01

Land surface temperature (LST) images retrieved from the thermal infrared (TIR) band data of Moderate Resolution Imaging Spectroradiometer (MODIS) have much lower spatial resolution than the MODIS visible and near-infrared (VNIR) band data. The coarse pixel scale of MODIS LST images (1000 m under nadir) have limited their capability in applying to many studies required high spatial resolution in comparison of the MODIS VNIR band data with pixel scale of 250–500 m. In this paper we intend to develop an efficient approach for pixel decomposition to increase the spatial resolution of MODIS LST image using the VNIR band data as assistance. The unique feature of this approach is to maintain the thermal radiance of parent pixels in the MODIS LST image unchanged after they are decomposed into the sub-pixels in the resulted image. There are two important steps in the decomposition: initial temperature estimation and final temperature determination. Therefore the approach can be termed double-step pixel decomposition (DSPD). Both steps involve a series of procedures to achieve the final result of decomposed LST image, including classification of the surface patterns, establishment of LST change with normalized difference of vegetation index (NDVI) and building index (NDBI), reversion of LST into thermal radiance through Planck equation, and computation of weights for the sub-pixels of the resulted image. Since the Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) with much higher spatial resolution than MODIS data was on-board the same platform (Terra) as MODIS for Earth observation, an experiment had been done in the study to validate the accuracy and efficiency of our approach for pixel decomposition. The ASTER LST image was used as the reference to compare with the decomposed LST image. The result showed that the spatial distribution of the decomposed LST image was very similar to that of the ASTER LST image with a root mean square error (RMSE) of 2.7 K for entire image. Comparison with the evaluation DisTrad (E-DisTrad) and re-sampling methods for pixel decomposition also indicate that our DSPD has the lowest RMSE in all cases, including urban region, water bodies, and natural terrain. The obvious increase in spatial resolution remarkably uplifts the capability of the coarse MODIS LST images in highlighting the details of LST variation. Therefore it can be concluded that, in spite of complicated procedures, the proposed DSPD approach provides an alternative to improve the spatial resolution of MODIS LST image hence expand its applicability to the real world. PMID:25609048

Snow-Cover Variability in North America in the 2000-2001 Winter as Determined from MODIS Snow Products

NASA Technical Reports Server (NTRS)

Hall, Dorothy K.; Salomonson, Vincent V.; Riggs, George A.; Chien, Janet Y. L.; Houser, Paul R. (Technical Monitor)

2001-01-01

Moderate Resolution Imaging Spectroradiometer (MODIS) snow-cover maps have been available since September 13, 2000. These products, at 500 m spatial resolution, are available through the National Snow and Ice Data Center Distributed Active Archive Center in Boulder, Colorado. By the 2001-02 winter, 5 km climate-modeling grid (CMG) products will be available for presentation of global views of snow cover and for use in climate models. All MODIS snow-cover products are produced from automated algorithms that map snow in an objective manner. In this paper, we describe the MODIS snow products, and show snow maps from the fall of 2000 in North America.

Snow-Cover Variability in North America in the 2000-2001 Winter as Determined from MODIS Snow Products

NASA Technical Reports Server (NTRS)

Hall, Dorothy K.; Salomonson, Vincent V.; Riggs, George A.; Chien, Y. L.; Houser, Paul R. (Technical Monitor)

2001-01-01

Moderate Resolution Imaging Spectroradiometer (MODIS) snow-cover maps have been available since September 13, 2000. These products, at 500-m spatial resolution, are available through the National Snow and Ice Data Center Distributed Active Archive Center in Boulder, Colorado. By the 2001-02 winter, 5-km climate-modeling grid (CMG) products will be available for presentation of global views of snow cover and for use in climate models. All MODIS snow-cover products are produced from automated algorithms that map snow in an objective manner. In this paper, we describe the MODIS snow products, and show snow maps from the fall of 2000 in North America.

Utilizing Hierarchical Segmentation to Generate Water and Snow Masks to Facilitate Monitoring Change with Remotely Sensed Image Data

NASA Technical Reports Server (NTRS)

Tilton, James C.; Lawrence, William T.; Plaza, Antonio J.

2006-01-01

The hierarchical segmentation (HSEG) algorithm is a hybrid of hierarchical step-wise optimization and constrained spectral clustering that produces a hierarchical set of image segmentations. This segmentation hierarchy organizes image data in a manner that makes the image's information content more accessible for analysis by enabling region-based analysis. This paper discusses data analysis with HSEG and describes several measures of region characteristics that may be useful analyzing segmentation hierarchies for various applications. Segmentation hierarchy analysis for generating landwater and snow/ice masks from MODIS (Moderate Resolution Imaging Spectroradiometer) data was demonstrated and compared with the corresponding MODIS standard products. The masks based on HSEG segmentation hierarchies compare very favorably to the MODIS standard products. Further, the HSEG based landwater mask was specifically tailored to the MODIS data and the HSEG snow/ice mask did not require the setting of a critical threshold as required in the production of the corresponding MODIS standard product.

Terrestrial remote sensing science and algorithms planned for EOS/MODIS

USGS Publications Warehouse

Running, S. W.; Justice, C.O.; Salomonson, V.V.; Hall, D.; Barker, J.; Kaufmann, Y. J.; Strahler, Alan H.; Huete, A.R.; Muller, Jan-Peter; Vanderbilt, V.; Wan, Z.; Teillet, P.; Carneggie, David M. Geological Survey (U.S.) Ohlen

1994-01-01

The Moderate Resolution Imaging Spectroradiometer (MODIS) will be the primary daily global monitoring sensor on the NASA Earth Observing System (EOS) satellites, scheduled for launch on the EOS-AM platform in June 1998 and the EOS-PM platform in December 2000. MODIS is a 36 channel radiometer covering 0·415-14·235 μm wavelengths, with spatial resolution from 250 m to 1 km at nadir. MODIS will be the primary EOS sensor for providing data on terrestrial biospheric dynamics and process activity. This paper presents the suite of global land products currently planned for EOSDIS implementation, to be developed by the authors of this paper, the MODIS land team (MODLAND). These include spectral albedo, land cover, spectral vegetation indices, snow and ice cover, surface temperature and fire, and a number of biophysical variables that will allow computation of global carbon cycles, hydrologic balances and biogeochemistry of critical greenhouse gases. Additionally, the regular global coverage of these variables will allow accurate surface change detection, a fundamental determinant of global change.

Progress towards MODIS and VIIRS Cloud Fraction Data Record Continuity

NASA Astrophysics Data System (ADS)

Ackerman, S. A.; Frey, R.; Holz, R.; Platnick, S. E.; Heidinger, A. K.

2016-12-01

Satellite-derived clear-sky vs. cloudy-sky discrimination at the pixel scale is an important input parameter used in many real-time applications. Cloud fractions, resulting from integrating over time and space, are also critical to the study of recent decadal climate changes. The NASA NPOESS Preparatory Project (NPP) has funded a science team to develop and study the ability to make continuous climate records from MODIS (2000-2020) and VIIRS (2012-2030). The MODAWG project, led by Dr. Steve Platnick of NASA/GSFC, combines elements of the MODIS processing system and the NOAA Algorithm Working Group (AWG) to achieve this goal. This presentation will focus on the cloud masking aspects of MODAWG, derived primarily from the MODIS cloud mask (MOD35). Challenges to continuity of cloud detection due to differences in instrument characteristics will be discussed. Cloud mask results from use of the same (continuity) algorithm will be shown for both MODIS and VIIRS, including comparisons to collocated CALIOP (Cloud-Aerosol Lidar with Orthogonal Polarization) cloud data.

Remote Sensing of Aerosol and Aerosol Radiative Forcing of Climate from EOS Terra MODIS Instrument

NASA Technical Reports Server (NTRS)

Kaufman, Yoram; Tanre, Didier; Remer, Lorraine; Einaudi, Franco (Technical Monitor)

2000-01-01

The recent launch of EOS-Terra into polar orbit has begun to revolutionize remote sensing of aerosol and their effect on climate. Terra has five instruments, two of them,Moderate Resolution Imaging Spectroradiometer (MODIS) and Multiangle Imaging Spectro-Radiometer (MISR) are designed to monitor global aerosol in two different complementary ways. Here we shall discuss the use of the multispectral measurements of MODIS to derive: (1) the global distribution of aerosol load (and optical thickness) over ocean and land; (2) to measure the impact of aerosol on reflection of sunlight to space; and (3) to measure the ability of aerosol to absorb solar radiation. These measurements have direct applications on the understanding of the effect of aerosol on climate, the ability to predict climate change, and on the monitoring of dust episodes and man-made pollution. Principles of remote sensing of aerosol from MODIS will be discussed and first examples of measurements from MODIS will be provided.

MODIS Technical Report Series. Volume 4: MODIS data access user's guide: Scan cube format

NASA Technical Reports Server (NTRS)

Kalb, Virginia L.; Goff, Thomas E.

1994-01-01

The software described in this document provides I/O functions to be used with Moderate Resolution Spectroradiometer (MODIS) level 1 and 2 data, and could be easily extended to other data sources. This data is in a scan cube data format: a 3-dimensional ragged array containing multiple bands which have resolutions ranging from 250 to 1000 meters. The complexity of the data structure is handled internally by the library. The I/O calls allow the user to access any pixel in any band through 'C' structure syntax. The high MODIS data volume (approaching half a terabyte per day) has been a driving factor in the library design. To avoid recopying data for user access, all I/O is performed through dynamic 'C' pointer manipulation. This manual contains background material on MODIS, several coding examples of library usage, in-depth discussions of each function, reference 'man' type pages, and several appendices with details of the included files used to customize a user's data product for use with the library.

Impacts of Cross-Platform Vicarious Calibration on the Deep Blue Aerosol Retrievals for Moderate Resolution Imaging Spectroradiometer Aboard Terra

NASA Technical Reports Server (NTRS)

Jeong, Myeong-Jae; Hsu, N. Christina; Kwiatkowska, Ewa J.; Franz, Bryan A.; Meister, Gerhard; Salustro, Clare E.

2012-01-01

The retrieval of aerosol properties from spaceborne sensors requires highly accurate and precise radiometric measurements, thus placing stringent requirements on sensor calibration and characterization. For the Terra/Moderate Resolution Imaging Spedroradiometer (MODIS), the characteristics of the detectors of certain bands, particularly band 8 [(B8); 412 nm], have changed significantly over time, leading to increased calibration uncertainty. In this paper, we explore a possibility of utilizing a cross-calibration method developed for characterizing the Terral MODIS detectors in the ocean bands by the National Aeronautics and Space Administration Ocean Biology Processing Group to improve aerosol retrieval over bright land surfaces. We found that the Terra/MODIS B8 reflectance corrected using the cross calibration method resulted in significant improvements for the retrieved aerosol optical thickness when compared with that from the Multi-angle Imaging Spectroradiometer, Aqua/MODIS, and the Aerosol Robotic Network. The method reported in this paper is implemented for the operational processing of the Terra/MODIS Deep Blue aerosol products.

Corrections to MODIS Terra Calibration and Polarization Trending Derived from Ocean Color Products

NASA Technical Reports Server (NTRS)

Meister, Gerhard; Eplee, Robert E.; Franz, Bryan A.

2014-01-01

Remotely sensed ocean color products require highly accurate top-of-atmosphere (TOA) radiances, on the order of 0.5% or better. Due to incidents both prelaunch and on-orbit, meeting this requirement has been a consistent problem for the MODIS instrument on the Terra satellite, especially in the later part of the mission. The NASA Ocean Biology Processing Group (OBPG) has developed an approach to correct the TOA radiances of MODIS Terra using spatially and temporally averaged ocean color products from other ocean color sensors (such as the SeaWiFS instrument on Orbview-2 or the MODIS instrument on the Aqua satellite). The latest results suggest that for MODIS Terra, both linear polarization parameters of the Mueller matrix are temporally evolving. A change to the functional form of the scan angle dependence improved the quality of the derived coefficients. Additionally, this paper demonstrates that simultaneously retrieving polarization and gain parameters improves the gain retrieval (versus retrieving the gain parameter only).

Validation of MODIS Aerosol Retrievals during PRIDE

NASA Technical Reports Server (NTRS)

Levy, R.; Remier, L.; Kaufman, Y.; Kleidman, R.; Holben, B.; Russell, P.; Livingston, J.; Einaudi, Franco (Technical Monitor)

2000-01-01

The Puerto Rico Dust Experiment (PRIDE) was held in Roosevelt Roads, Puerto Rico from June 26 to July 24, 2000. It was intended to study the radiative and microphysical properties of Saharan dust transported into Puerto Rico. PRIDE had the unique distinction of being the first major field experiment to allow direct comparison of aerosol retrievals from MODIS (MODerate Imaging Spectro-radiometer - aboard the Terra satellite) with data from a variety of ground, shipboard and air-based instruments. Over the ocean the MODIS algorithm retrieves optical depth as well as information about the aerosol's size. During PRIDE, MODIS passed over Roosevelt Roads approximately once per day during daylight hours. Due to sunglint and clouds over Puerto Rico, aerosol retrievals can be made from only about half the MODIS scenes. In this study we try to "validate" our aerosol retrievals by comparing to measurements taken by sun-photometers from multiple platforms, including: Cimel (AERONET) from the ground, Microtops (handheld) from ground and ship, and the NASA-Ames sunphotometer from the air.

MODIS Snow and Ice Production

NASA Technical Reports Server (NTRS)

Hall, Dorthoy K.; Hoser, Paul (Technical Monitor)

2002-01-01

Daily, global snow cover maps, and sea ice cover and sea ice surface temperature (IST) maps are derived from NASA's Moderate Resolution Imaging Spectroradiometer (MODIS), are available at no cost through the National Snow and Ice Data Center (NSIDC). Included on this CD-ROM are samples of the MODIS snow and ice products. In addition, an animation, done by the Scientific Visualization studio at Goddard Space Flight Center, is also included.

MODIS on-orbit thermal emissive bands lifetime performance

NASA Astrophysics Data System (ADS)

Madhavan, Sriharsha; Wu, Aisheng; Chen, Na; Xiong, Xiaoxiong

2016-05-01

MODerate resolution Imaging Spectroradiometer (MODIS), a leading heritage sensor in the fleet of Earth Observing System for the National Aeronautics and Space Administration (NASA) is in space orbit on two spacecrafts. They are the Terra (T) and Aqua (A) platforms. Both instruments have successfully continued to operate beyond the 6 year design life time, with the T-MODIS currently functional beyond 15 years and the A-MODIS operating beyond 13 years respectively. The MODIS sensor characteristics include a spectral coverage from 0.41 μm - 14.4 μm, of which wavelengths ranging from 3.7 μm - 14. 4 μm cover the thermal infrared region also referred to as the Thermal Emissive Bands (TEBs). The TEBs is calibrated using a v-grooved BlackBody (BB) whose temperature measurements are traceable to the National Institute of Standards and Technology temperature scales. The TEBs calibration based on the onboard BB is extremely important for its high radiometric fidelity. In this paper, we provide a complete characterization of the lifetime instrument performance of both MODIS instruments in terms of the sensor gain, the Noise Equivalent difference Temperature, key instrument telemetry such as the BB lifetime trends, the instrument temperature trends, the Cold Focal Plane telemetry and finally, the total assessed calibration uncertainty of the TEBs.

Maturity onset diabetes of the young (MODY)--history, first case reports and recent advances.

PubMed

Siddiqui, Khalid; Musambil, Mohthash; Nazir, Nyla

2015-01-15

The world is seemingly facing a global increase in people suffering from diabetes especially in developing countries. The worldwide occurrence of diabetes for all age groups in year 2000 was estimated to be 2.8% and this number is most certainly expected to rise to 4.4% by 2030. Maturity-onset of diabetes of the young, or MODY, is a form of monogenic diabetes that is caused by mutations occurring in a number of different genes. Mutations in different genes tend to cause a slightly different variant of diabetes. MODY is typically diagnosed during late childhood, adolescence, or early adulthood and is usually observed to develop in adults during their late 50's. One of the main drawbacks in its diagnosis is that many people with MODY are misdiagnosed as having type 1 or type 2 diabetes. However, a molecular and genetic diagnosis can result in a better treatment and could also help in identifying other family members with MODY. This article explores the historical prospect and the genetic background of MODY, a brief summary of the first case reported and the significant factors that differentiate it from type 1 and type 2 diabetes. Copyright © 2014 Elsevier B.V. All rights reserved.

MODIS On-Orbit Thermal Emissive Bands Lifetime Performance

NASA Technical Reports Server (NTRS)

Madhavan, Sriharsha; Xiong, Xiaoxiong

2016-01-01

MODerate resolution Imaging Spectroradiometer (MODIS), a leading heritage sensor in the fleet of Earth Observing System for the National Aeronautics and Space Administration (NASA) is in space orbit on two spacecrafts. They are the Terra (T) and Aqua (A) platforms. Both instruments have successfully continued to operate beyond the 6 year design life time, with the T-MODIS currently functional beyond 15 years and the A-MODIS operating beyond 13 years respectively. The MODIS sensor characteristics include a spectral coverage from 0.41 micron 14.4 micron, of which wavelengths ranging from 3.7 micron 14. 4 micron cover the thermal infrared region also referred to as the Thermal Emissive Bands (TEBs). The TEBs is calibrated using a v-grooved BlackBody (BB) whose temperature measurements are traceable to the National Institute of Standards and Technology temperature scales. The TEBs calibration based on the onboard BB is extremely important for its high radiometric fidelity. In this paper, we provide a complete characterization of the lifetime instrument performance of both MODIS instruments in terms of the sensor gain, the Noise Equivalent difference Temperature, key instrument telemetry such as the BB lifetime trends, the instrument temperature trends, the Cold Focal Plane telemetry and finally, the total assessed calibration uncertainty of the TEBs.

Agreement evaluation of AVHRR and MODIS 16-day composite NDVI data sets

USGS Publications Warehouse

Ji, Lei; Gallo, Kevin P.; Eidenshink, Jeffery C.; Dwyer, John L.

2008-01-01

Satellite-derived normalized difference vegetation index (NDVI) data have been used extensively to detect and monitor vegetation conditions at regional and global levels. A combination of NDVI data sets derived from AVHRR and MODIS can be used to construct a long NDVI time series that may also be extended to VIIRS. Comparative analysis of NDVI data derived from AVHRR and MODIS is critical to understanding the data continuity through the time series. In this study, the AVHRR and MODIS 16-day composite NDVI products were compared using regression and agreement analysis methods. The analysis shows a high agreement between the AVHRR-NDVI and MODIS-NDVI observed from 2002 and 2003 for the conterminous United States, but the difference between the two data sets is appreciable. Twenty per cent of the total difference between the two data sets is due to systematic difference, with the remainder due to unsystematic difference. The systematic difference can be eliminated with a linear regression-based transformation between two data sets, and the unsystematic difference can be reduced partially by applying spatial filters to the data. We conclude that the continuity of NDVI time series from AVHRR to MODIS is satisfactory, but a linear transformation between the two sets is recommended.

New Multispectral Cloud Retrievals from MODIS

NASA Technical Reports Server (NTRS)

Platnick, Steven; Tsay, Si-Chee; Ackerman, Steven A.; Gray, Mark A.; Moody, Eric G.; Li, Jason Y.; Arnold, G. T.; King, Michael D. (Technical Monitor)

2000-01-01

The Moderate Resolution Imaging Spectroradiometer (MODIS) was developed by NASA and launched onboard the Terra spacecraft on December 18, 1999. It achieved its final orbit and began Earth observations on February 24, 2000. MODIS scans a swath width sufficient to provide nearly complete global coverage every two days from a polar-orbiting, sun-synchronous, platform at an altitude of 705 km, and provides images in 36 spectral bands between 0.415 and 14.235 micrometers with spatial resolutions of 250 m (2 bands), 500 m (5 bands) and 1000 m (29 bands). These bands have been carefully selected to enable advanced studies of land, ocean, and atmospheric processes. In this paper I will describe the various methods being used for the remote sensing of cloud properties using MODIS data, focusing primarily on the MODIS cloud mask used to distinguish clouds, clear sky, heavy aerosol, and shadows on the ground, and on the remote sensing of cloud optical properties, especially cloud optical thickness and effective radius of cloud drops and ice crystals. Results will be presented of MODIS cloud properties both over the land and over the ocean, showing the consistency in cloud retrievals over various ecosystems used in the retrievals. The implications of this new observing system on global analysis of the Earth's environment will be discussed.

Capability of Integrated MODIS Imagery and ALOS for Oil Palm, Rubber and Forest Areas Mapping in Tropical Forest Regions

PubMed Central

Razali, Sheriza Mohd; Marin, Arnaldo; Nuruddin, Ahmad Ainuddin; Shafri, Helmi Zulhaidi Mohd; Hamid, Hazandy Abdul

2014-01-01

Various classification methods have been applied for low resolution of the entire Earth's surface from recorded satellite images, but insufficient study has determined which method, for which satellite data, is economically viable for tropical forest land use mapping. This study employed Iterative Self Organizing Data Analysis Techniques (ISODATA) and K-Means classification techniques to classified Moderate Resolution Imaging Spectroradiometer (MODIS) Surface Reflectance satellite image into forests, oil palm groves, rubber plantations, mixed horticulture, mixed oil palm and rubber and mixed forest and rubber. Even though frequent cloud cover has been a challenge for mapping tropical forests, our MODIS land use classification map found that 2008 ISODATA-1 performed well with overall accuracy of 94%, with the highest Producer's Accuracy of Forest with 86%, and were consistent with MODIS Land Cover 2008 (MOD12Q1), respectively. The MODIS land use classification was able to distinguish young oil palm groves from open areas, rubber and mature oil palm plantations, on the Advanced Land Observing Satellite (ALOS) map, whereas rubber was more easily distinguished from an open area than from mixed rubber and forest. This study provides insight on the potential for integrating regional databases and temporal MODIS data, in order to map land use in tropical forest regions. PMID:24811079

Estimation of Surface Air Temperature from MODIS 1km Resolution Land Surface Temperature Over Northern China

NASA Technical Reports Server (NTRS)

Shen, Suhung; Leptoukh, Gregory G.; Gerasimov, Irina

2010-01-01

Surface air temperature is a critical variable to describe the energy and water cycle of the Earth-atmosphere system and is a key input element for hydrology and land surface models. It is a very important variable in agricultural applications and climate change studies. This is a preliminary study to examine statistical relationships between ground meteorological station measured surface daily maximum/minimum air temperature and satellite remotely sensed land surface temperature from MODIS over the dry and semiarid regions of northern China. Studies were conducted for both MODIS-Terra and MODIS-Aqua by using year 2009 data. Results indicate that the relationships between surface air temperature and remotely sensed land surface temperature are statistically significant. The relationships between the maximum air temperature and daytime land surface temperature depends significantly on land surface types and vegetation index, but the minimum air temperature and nighttime land surface temperature has little dependence on the surface conditions. Based on linear regression relationship between surface air temperature and MODIS land surface temperature, surface maximum and minimum air temperatures are estimated from 1km MODIS land surface temperature under clear sky conditions. The statistical errors (sigma) of the estimated daily maximum (minimum) air temperature is about 3.8 C(3.7 C).

Accessing and Understanding MODIS Data

NASA Technical Reports Server (NTRS)

Leptoukh, Gregory; Jenkerson, Calli B.; Jodha, Siri

2003-01-01

The National Aeronautics and Space Administration (NASA) launched the Terra satellite in December 1999, as part of the Earth Science Enterprise promotion of interdisciplinary studies of the integrated Earth system. Aqua, the second satellite from the series of EOS constellation, was launched in May 2002. Both satellites carry the MODerate resolution Imaging Spectroradiometer (MODIS) instrument. MODIS data are processed at the Goddard Space Flight Center, Greenbelt, MD, and then archived and distributed by the Distributed Active Archive Centers (DAACs). Data products from the MODIS sensors present new challenges to remote sensing scientists due to specialized production level, data format, and map projection. MODIS data are distributed as calibrated radiances and as higher level products such as: surface reflectance, water-leaving radiances, ocean color and sea surface temperature, land surface kinetic temperature, vegetation indices, leaf area index, land cover, snow cover, sea ice extent, cloud mask, atmospheric profiles, aerosol properties, and many other geophysical parameters. MODIS data are stored in HDF- EOS format in both swath format and in several different map projections. This tutorial guides users through data set characteristics as well as search and order interfaces, data unpacking, data subsetting, and potential applications of the data. A CD-ROM with sample data sets, and software tools for working with the data will be provided to the course participants.

Multispectral Cloud Retrievals from MODIS on Terra and Aqua

NASA Technical Reports Server (NTRS)

King, Michael D.; Platnick, Steven; Ackerman, Steven A.; Menzel, W. Paul; Gray, Mark A.; Moody, Eric G.

2002-01-01

The Moderate Resolution Imaging Spectroradiometer (MODIS) was developed by NASA and launched onboard the Terra spacecraft on December 18, 1999 and the Aqua spacecraft on April 26, 2002. MODIS scans a swath width sufficient to provide nearly complete global coverage every two days from each polar-orbiting, sun-synchronous, platform at an altitude of 705 km, and provides images in 36 spectral bands between 0.415 and 14.235 microns with spatial resolutions of 250 m (2 bands), 500 m (5 bands) and 1000 m (29 bands). In this paper we will describe the various methods being used for the remote sensing of cloud properties using MODIS data, focusing primarily on the MODIS cloud mask used to distinguish clouds, clear sky, heavy aerosol, and shadows on the ground, and on the remote sensing of cloud optical properties, especially cloud optical thickness and effective radius of water drops and ice crystals. Additional properties of clouds derived from multispectral thermal infrared measurements, especially cloud top pressure and emissivity, will also be described. Results will be presented of MODIS cloud properties both over the land and over the ocean, showing the consistency in cloud retrievals over various ecosystems used in the retrievals. The implications of this new observing system on global analysis of the Earth's environment will be discussed.

New Multispectral Cloud Retrievals from MODIS

NASA Technical Reports Server (NTRS)

King, Michael D.; Platnick, Steven; Tsay, Si-Chee; Ackerman, Steven A.; Menzel, W. Paul; Gray, Mark A.; Moody, Eric G.; Li, Jason Y.; Arnold, G. Thomas

2001-01-01

The Moderate Resolution Imaging Spectroradiometer (MODIS) was developed by NASA and launched onboard the Terra spacecraft on December 18, 1999. It achieved its final orbit and began Earth observations on February 24, 2000. MODIS scans a swath width sufficient to provide nearly complete global coverage every two days from a polar-orbiting, sun- synchronous, platform at an altitude of 705 km, and provides images in 36 spectral bands between 0.415 and 14.235 microns with spatial resolutions of 250 m (two bands), 500 m (five bands) and 1000 m (29 bands). In this paper we will describe the various methods being used for the remote sensing of cloud properties using MODIS data, focusing primarily on the MODIS cloud mask used to distinguish clouds, clear sky, heavy aerosol, and shadows on the ground, and on the remote sensing of cloud optical properties, especially cloud optical thickness and effective radius of water drops and ice crystals. Additional properties of clouds derived from multispectral thermal infrared measurements, especially cloud top pressure and emissivity, will also be described. Results will be presented of MODIS cloud properties both over the land and over the ocean, showing the consistency in cloud retrievals over various ecosystems used in the retrievals. The implications of this new observing system on global analysis of the Earth's environment will be discussed.

Capability of integrated MODIS imagery and ALOS for oil palm, rubber and forest areas mapping in tropical forest regions.

PubMed

Razali, Sheriza Mohd; Marin, Arnaldo; Nuruddin, Ahmad Ainuddin; Shafri, Helmi Zulhaidi Mohd; Hamid, Hazandy Abdul

2014-05-07

Various classification methods have been applied for low resolution of the entire Earth's surface from recorded satellite images, but insufficient study has determined which method, for which satellite data, is economically viable for tropical forest land use mapping. This study employed Iterative Self Organizing Data Analysis Techniques (ISODATA) and K-Means classification techniques to classified Moderate Resolution Imaging Spectroradiometer (MODIS) Surface Reflectance satellite image into forests, oil palm groves, rubber plantations, mixed horticulture, mixed oil palm and rubber and mixed forest and rubber. Even though frequent cloud cover has been a challenge for mapping tropical forests, our MODIS land use classification map found that 2008 ISODATA-1 performed well with overall accuracy of 94%, with the highest Producer's Accuracy of Forest with 86%, and were consistent with MODIS Land Cover 2008 (MOD12Q1), respectively. The MODIS land use classification was able to distinguish young oil palm groves from open areas, rubber and mature oil palm plantations, on the Advanced Land Observing Satellite (ALOS) map, whereas rubber was more easily distinguished from an open area than from mixed rubber and forest. This study provides insight on the potential for integrating regional databases and temporal MODIS data, in order to map land use in tropical forest regions.

If the MODIS Aerosol Product is so Infested with Cloud Contamination, Why Does Everybody Use the Product?

NASA Technical Reports Server (NTRS)

Remeer, Lorraine A.

2011-01-01

The MODIS aerosol cloud mask is based on a spatial variability test, using the assumption that aerosols are more homogeneous than clouds. On top of this first line of defense are a series of additional tests based on threshold values and ratios of various MODIS channels. The goal is to eliminate clouds and keep the aerosol. How well have we succeeded? There have been several studies showing cloud contamination in the MODIS aerosol product and several alternative cloud masks proposed. There are even "competing" MODIS aerosol products that offer an alternative "cloud free" world. Are these alternative products an improvement to the old standard product? We find there is a trade-off between retrieval availability and cloud contamination, and for many applications it is better to have a little bit of cloud in the product than to not have enough product. I will review the decisions that led us to the present MODIS cloud mask, and show how it is simultaneously too liberal and too conservative, some ideas on how to make it better and why in the end it doesn't matter. I hope to inspire a spirited discussion and will be very willing to take your complaints and suggestions.

Calibration Improvements in the Detector-to-Detector Differences for the MODIS Ocean Color Bands

NASA Technical Reports Server (NTRS)

Li, Yonghong; Angal, Amit; Wu, Aisheng; Geng, Xu; Link, Daniel; Xiong, Xiaoxiong

2016-01-01

The Moderate Resolution Imaging Spectroradiometer (MODIS), a major instrument within NASAs Earth Observation System missions, has operated for over 16 and 14 years onboard the Terra and Aqua satellites, respectively. Its reflective solar bands (RSB) covering a spectral range from 0.4 to 2.1 micrometers are primarily calibrated using the on-board solar diffuser(SD), with its on-orbit degradation monitored using the Solar Diffuser Stability Monitor. RSB calibrations are supplemented by near-monthly lunar measurements acquired from the instruments space-view port. Nine bands (bands 8-16) in the visible to near infrared spectral range from 0.412 to 0.866 micrometers are primarily used for ocean color observations.During a recent reprocessing of ocean color products, performed by the NASA Ocean Biology Processing Group, detector-to-detector differences of up to 1.5% were observed in bands 13-16 of Terra MODIS. This paper provides an overview of the current approach to characterize the MODIS detector-to-detector differences. An alternative methodology was developed to mitigate the observed impacts for bands 13-16. The results indicated an improvement in the detector residuals and in turn are expected to improve the MODIS ocean color products. This paper also discusses the limitations,subsequent enhancements, and the improvements planned for future MODIS calibration collections.

The NASA Earth Observing System (EOS) Terra and Aqua Mission Moderate Resolution Imaging Spectroradiometer (MODIS: Science and Applications

NASA Technical Reports Server (NTRS)

Salomnson, Vincent V.

2003-01-01

The Moderate Resolution Imaging Spectroradiometer (MODIS) on the Earth Observing System (EOS) Terra Mission began to produce data in February 2000. The EOS Aqua mission was launched successfully May 4,2002 with another MODIS on it and "first light" observations occurred on June 24,2002. The Terra MODIS is in a sun-synchronous orbit going north to south in the daylight portion of the orbit crossing the equator at about 1030 hours local time. The Aqua spacecraft operates in a sun-synchronous orbit going south to north in the daylight portion of the orbit crossing the equator at approximately 1330 hours local time. The spacecraft, instrument, and data systems for both MODIS instruments are performing well and are producing a wide variety of data products useful for scientific and applications studies in relatively consistent fashion extending from November 2000 to the present. Within the approximately 40 MODIS data products, several are new and represent powerful and exciting capabilities such the ability to provide observations over the globe of fire occurrences, microphysical properties of clouds and sun-stimulated fluorescence from phytoplankton in the surface waters of the ocean. The remainder of the MODIS products exceeds or, at a minimum, matches the capabilities of products from heritage sensors such as, for example, the Advanced Very High Resolution Radiometer (AVHRR). Efforts are underway to provide data sets for the greater Earth science community and to improve access to these products at the various Distributed Active Archive Centers (DAAC's) or through Direct Broadcast (DB) stations.

MODIS polarization performance and anomalous four-cycle polarization phenomenon

NASA Astrophysics Data System (ADS)

Young, James B.; Knight, Ed; Merrow, Cindy

1998-10-01

The Moderate Resolution Imaging Spectroradiometer (MODIS) will be one of the primary instruments observing the earth on the Earth Observing System (EOS) scheduled for launch in 1999. MODIS polarization performance characterization was required for the 0.4 to 0.6 micrometers (VIS), 0.6 micrometers to 1.0 micrometers (NIR), and 1.0 micrometers to 2.3 micrometers (SWIR) regions. A polarized source assembly (PSA) consisting of a collimator with a rotatable Ahrens polarizer was used to illuminate MODIS with a linearly polarized beam. MODIS signal function having two-cycles per 360 degrees prism rotation signal function was expected. However, some spectral bands had a distinct four-cycle anomalous signal. The expected two-cycle function was present in all regions with the four-cycle anomaly being limited to the NIR region. Fourier analysis was very useful tooling determining the cause of the anomaly. A simplified polarization model of the PSA and MODIS was generated using Mueller matrices-Stokes vector formalism. Parametric modeling illustrated that this anomaly could be produced by energy having multiple passes between PSA Ahrens prism and the MODIS focal plane filters. Furthermore, the model gave NIR four-cycle magnitudes that were consistent with observations. The IVS and SWIR optical trans had birefringent elements that served to scramble the multiple pass anomaly. The model validity was demonstrated with an experimental setup that had partial aperture illumination which eliminated the possibility of multiple passes. The four-cycle response was eliminated while producing the same two-cycle polarization response. Data will be shown to illustrate the four-cycle phenomenon.

MODIS Solar Diffuser On-orbit Performance

NASA Technical Reports Server (NTRS)

Xiong, Xiaoxiong; Chen, H.; Choi, T.; Sun, J.; Angal, A.

2008-01-01

MODIS is a key instrument for the NASA Earth Observing System (EOS), currently operated on both the Terra and Aqua missions. Each MODIS instrument has 20 reflective solar bands (RSBs) and 16 thermal emissive bands (TEBs). MODIS RSB on-orbit calibration is reflectance based using an on-board solar diffuser (SD). The SD bi-directional reflectance factors (BRFs) were characterized pre-launch using reference diffuser samples, which are traceable to NIST reflectance standards. The SD BRF on-orbit degradation (or change) is tracked by another onboard device, called the solar diffuser stability monitor (SDSM). The SDSM is operated during each scheduled SD calibration event, making alternate observations of direct sunlight and the diffusely reflected sunlight from the SD. The time series of the ratios of SDSM's SD view to its Sun view provide SD degradation information. This paper presents and compares the Terra and Aqua MODIS SD on-orbit performance. Results show that the SD on-orbit degradation depends on the amount of solar exposure of the SD plate. In addition, it is strongly wavelengthdependent, with a larger degradation rate at shorter wavelengths. For Terra MODIS, an SD door anomaly occurred in May 2003 that led to a decision to fix the door permanently at an "open" position. Since then, the SD degradation rate has significantly increased due to more frequent solar exposure. As expected, the SD on-orbit performance directly impacts the RSB calibration performance. The lessons learned from MODIS on-orbit calibration will provide useful insights into the development and operation of future SD calibration systems.

Susceptibility of Glucokinase-MODY Mutants to Inactivation by Oxidative Stress in Pancreatic β-Cells

PubMed Central

Cullen, Kirsty S.; Matschinsky, Franz M.; Agius, Loranne; Arden, Catherine

2011-01-01

OBJECTIVE The posttranslational regulation of glucokinase (GK) differs in hepatocytes and pancreatic β-cells. We tested the hypothesis that GK mutants that cause maturity-onset diabetes of the young (GK-MODY) show compromised activity and posttranslational regulation in β-cells. RESEARCH DESIGN AND METHODS Activity and protein expression of GK-MODY and persistent hyperinsulinemic hypoglycemia of infancy (PHHI) mutants were studied in β-cell (MIN6) and non–β-cell (H4IIE) models. Binding of GK to phosphofructo-2-kinase, fructose-2,6-bisphosphatase (PFK2/FBPase2) was studied by bimolecular fluorescence complementation in cell-based models. RESULTS Nine of 11 GK-MODY mutants that have minimal effect on enzyme kinetics in vitro showed decreased specific activity relative to wild type when expressed in β-cells. A subset of these were stable in non–β-cells but showed increased inactivation in conditions of oxidative stress and partial reversal of inactivation by dithiothreitol. Unlike the GK-MODY mutants, four of five GK-PHHI mutants had similar specific activity to wild type and Y214C had higher activity than wild type. The GK-binding protein PFK2/FBPase2 protected wild-type GK from oxidative inactivation and the decreased stability of GK-MODY mutants correlated with decreased interaction with PFK2/FBPase2. CONCLUSIONS Several GK-MODY mutants show posttranslational defects in β-cells characterized by increased susceptibility to oxidative stress and/or protein instability. Regulation of GK activity through modulation of thiol status may be a physiological regulatory mechanism for the control of GK activity in β-cells. PMID:22028181

Estimating the Effect of Gypsy Moth Defloiation Using MODIS

NASA Technical Reports Server (NTRS)

deBeurs, K. M.; Townsend, P. A.

2008-01-01

The area of North American forests affected by gypsy moth defoliation continues to expand despite efforts to slow the spread. With the increased area of infestation, ecological, environmental and economic concerns about gypsy moth disturbance remain significant, necessitating coordinated, repeatable and comprehensive monitoring of the areas affected. In this study, our primary objective was to estimate the magnitude of defoliation using Moderate Resolution Imaging Spectroradiometer (MODIS) imagery for a gypsy moth outbreak that occurred in the US central Appalachian Mountains in 2000 and 2001. We focused on determining the appropriate spectral MODIS indices and temporal compositing method to best monitor the effects of gypsy moth defoliation. We tested MODIS-based Normalized Difference Vegetation Index (NDVI), Enhanced Vegetation Index (EVI), Normalized Difference Water Index (NDWI), and two versions of the Normalized Difference Infrared index (NDIIb6 and NDIIb7, using the channels centered on 1640 nm and 2130 nm respectively) for their capacity to map defoliation as estimated by ground observations. In addition, we evaluated three temporal resolutions: daily, 8-day and 16-day data. We validated the results through quantitative comparison to Landsat based defoliation estimates and traditional sketch maps. Our MODIS based defoliation estimates based on NDIIb6 and NDIIb7 closely matched Landsat defoliation estimates derived from field data as well as sketch maps. We conclude that daily MODIS data can be used with confidence to monitor insect defoliation on an annual time scale, at least for larger patches (greater than 0.63 km2). Eight-day and 16-day MODIS composites may be of lesser use due to the ephemeral character of disturbance by the gypsy moth.

Evaluation of Surface and Near-Surface Melt Characteristics on the Greenland Ice Sheet using MODIS and QuikSCAT Data

NASA Technical Reports Server (NTRS)

Hall, Dorothy K.; Nghiem, Son V.; Schaaf, Crystal B.; DiGirolamo, Nicolo E.

2009-01-01

The Greenland Ice Sheet has been the focus of much attention recently because of increasing melt in response to regional climate warming. To improve our ability to measure surface melt, we use remote-sensing data products to study surface and near-surface melt characteristics of the Greenland Ice Sheet for the 2007 melt season when record melt extent and runoff occurred. Moderate Resolution Imaging Spectroradiometer (MODIS) daily land-surface temperature (LST), MODIS daily snow albedo, and a special diurnal melt product derived from QuikSCAT (QS) scatterometer data, are all effective in measuring the evolution of melt on the ice sheet. These daily products, produced from different parts of the electromagnetic spectrum, are sensitive to different geophysical features, though QS- and MODIS-derived melt generally show excellent correspondence when surface melt is present on the ice sheet. Values derived from the daily MODIS snow albedo product drop in response to melt, and change with apparent grain-size changes. For the 2007 melt season, the QS and MODIS LST products detect 862,769 square kilometers and 766,184 square kilometers of melt, respectively. The QS product detects about 11% greater melt extent than is detected by the MODIS LST product probably because QS is more sensitive to surface melt, and can detect subsurface melt. The consistency of the response of the different products demonstrates unequivocally that physically-meaningful melt/freeze boundaries can be detected. We have demonstrated that these products, used together, can improve the precision in mapping surface and near-surface melt extent on the Greenland Ice Sheet.

Rice Crop Monitoring and Yield Assessment with MODIS 250m Gridded Vegetation Products: A Case Study of Sa Kaeo Province, Thailand

NASA Astrophysics Data System (ADS)

Wijesingha, J. S. J.; Deshapriya, N. L.; Samarakoon, L.

2015-04-01

Billions of people in the world depend on rice as a staple food and as an income-generating crop. Asia is the leader in rice cultivation and it is necessary to maintain an up-to-date rice-related database to ensure food security as well as economic development. This study investigates general applicability of high temporal resolution Moderate Resolution Imaging Spectroradiometer (MODIS) 250m gridded vegetation product for monitoring rice crop growth, mapping rice crop acreage and analyzing crop yield, at the province-level. The MODIS 250m Normalized Difference Vegetation Index (NDVI) and Enhanced Vegetation Index (EVI) time series data, field data and crop calendar information were utilized in this research in Sa Kaeo Province, Thailand. The following methodology was used: (1) data pre-processing and rice plant growth analysis using Vegetation Indices (VI) (2) extraction of rice acreage and start-of-season dates from VI time series data (3) accuracy assessment, and (4) yield analysis with MODIS VI. The results show a direct relationship between rice plant height and MODIS VI. The crop calendar information and the smoothed NDVI time series with Whittaker Smoother gave high rice acreage estimation (with 86% area accuracy and 75% classification accuracy). Point level yield analysis showed that the MODIS EVI is highly correlated with rice yield and yield prediction using maximum EVI in the rice cycle predicted yield with an average prediction error 4.2%. This study shows the immense potential of MODIS gridded vegetation product for keeping an up-to-date Geographic Information System of rice cultivation.

Susceptibility of glucokinase-MODY mutants to inactivation by oxidative stress in pancreatic β-cells.

PubMed

Cullen, Kirsty S; Matschinsky, Franz M; Agius, Loranne; Arden, Catherine

2011-12-01

The posttranslational regulation of glucokinase (GK) differs in hepatocytes and pancreatic β-cells. We tested the hypothesis that GK mutants that cause maturity-onset diabetes of the young (GK-MODY) show compromised activity and posttranslational regulation in β-cells. Activity and protein expression of GK-MODY and persistent hyperinsulinemic hypoglycemia of infancy (PHHI) mutants were studied in β-cell (MIN6) and non-β-cell (H4IIE) models. Binding of GK to phosphofructo-2-kinase, fructose-2,6-bisphosphatase (PFK2/FBPase2) was studied by bimolecular fluorescence complementation in cell-based models. Nine of 11 GK-MODY mutants that have minimal effect on enzyme kinetics in vitro showed decreased specific activity relative to wild type when expressed in β-cells. A subset of these were stable in non-β-cells but showed increased inactivation in conditions of oxidative stress and partial reversal of inactivation by dithiothreitol. Unlike the GK-MODY mutants, four of five GK-PHHI mutants had similar specific activity to wild type and Y214C had higher activity than wild type. The GK-binding protein PFK2/FBPase2 protected wild-type GK from oxidative inactivation and the decreased stability of GK-MODY mutants correlated with decreased interaction with PFK2/FBPase2. Several GK-MODY mutants show posttranslational defects in β-cells characterized by increased susceptibility to oxidative stress and/or protein instability. Regulation of GK activity through modulation of thiol status may be a physiological regulatory mechanism for the control of GK activity in β-cells.

Comparison of MODIS and VIIRS On-board Blackbody Performance

NASA Technical Reports Server (NTRS)

Xiong, Jack; Butler, Jim; Wu, Aisheng; Chiang, Vincent; McIntire, Jeff; Oudari, Hassan

2012-01-01

MODIS has 16 thermal emissive bands (TEBs), covering wavelengths from 3.7 to 14.4 microns. MODIS TEBs are calibrated on-orbit by a v-grooved blackbody (BB) on a scan-by-scan basis. The BB temperatures are measured by a set of 12 thennistors. As expected, the BB temperature uncertainty and stability have direct impact on the quality of TEB calibration and, therefore, the quality of the science products derived from TEB observations. Since launch, Terra and Aqua MODIS have successfully operated for more than 12 and 10 years, respectively. Their on-board BB performance has been satisfactory in meeting the TEB calibration requirements. The first VIIRS, launched on-board the Suomi NPP spacecraft on October 28, 2011, has successfully completed its initial Intensive Calibration and Validation (ICV) phase. VIIRS has 7 thermal emissive bands (TEBs), covering wavelengths from 3.7 to 12.4 microns. Designed with strong MODIS heritage, VIIRS uses a similar BB for its TEB calibration. Like MODIS, VIIRS BB is nominally controlled at a pre-determined temperature (set point). Periodically, a BB Warm-Up and Cool-Down (WUCD) operation is performed, during which the BB temperatures vary from instrument ambient (temperature) to 315K. This paper examines NPP VIIRS BB on-orbit performance. It focuses on its BB temperature scan-to-scan variations at nominally controlled temperature as well as during its WUCD operation and their impact on TEB calibration uncertainty. Comparisons of VIIRS (NPP) and MODIS (Terra and Aqua) BB on-orbit performance and lessons learned for future improvements are also presented in this paper.

MODIS-VIIRS Intercalibration for Dark Target Aerosol Retrieval Over Ocean

NASA Astrophysics Data System (ADS)

Sawyer, V. R.; Levy, R. C.; Mattoo, S.; Quinn, G.; Veglio, P.

2016-12-01

Any future climate record for satellite aerosol retrieval will require continuity over multiple decades, longer than the lifespan of an individual satellite instrument. The Dark Target algorithm was developed for MODIS, which began taking observations in 1999; the two MODIS instruments currently in orbit are not expected to continue taking observations beyond the early 2020s. However, the algorithm is portable, and a Dark Target product for VIIRS is scheduled for release December 2016. Because MODIS and VIIRS operate at different wavelengths, resolutions, fields of view and orbital timing, the transition can introduce artifacts that must be corrected. Without these corrections, it will be difficult to find any changes that may occur in the global aerosol climate record over time periods that span the transition from MODIS to VIIRS retrievals. The University of Wisconsin-Madison SIPS team found thousands of matches between 2012 and 2016 in which Aqua-MODIS and Suomi-NPP VIIRS observe the same location at similar times and view angles. These matched cases are used to identify corresponding matches in the Intermediate File Format (IFF) aerosol retrievals for MODIS and VIIRS, which are compared to one another in turn. Because most known sources of disagreement between the two instruments have already been corrected during the IFF retrieval, the direct comparison between near-collocated cases shows only the differences that remain at local and regional scales. The comparison is further restricted to clear-sky cases over ocean, so that the investigation of seasonal, diurnal and geographic variation is not affected by uncertainties in the land surface or cloud contamination.

Seasonal nitrate algorithms for nitrate retrieval using OCEANSAT-2 and MODIS-AQUA satellite data.

PubMed

Durairaj, Poornima; Sarangi, Ranjit Kumar; Ramalingam, Shanthi; Thirunavukarassu, Thangaradjou; Chauhan, Prakash

2015-04-01

In situ datasets of nitrate, sea surface temperature (SST), and chlorophyll a (chl a) collected during the monthly coastal samplings and organized cruises along the Tamilnadu and Andhra Pradesh coast between 2009 and 2013 were used to develop seasonal nitrate algorithms. The nitrate algorithms have been built up based on the three-dimensional regressions between SST, chl a, and nitrate in situ data using linear, Gaussian, Lorentzian, and paraboloid function fittings. Among these four functions, paraboloid was found to be better with the highest co-efficient of determination (postmonsoon: R2=0.711, n=357; summer: R2=0.635, n=302; premonsoon: R2=0.829, n=249; and monsoon: R2=0.692, n=272) for all seasons. Based on these fittings, seasonal nitrate images were generated using the concurrent satellite data of SST from Moderate Resolution Imaging Spectroradiometer (MODIS) and chlorophyll (chl) from Ocean Color Monitor (OCM-2) and MODIS. The best retrieval of modeled nitrate (R2=0.527, root mean square error (RMSE)=3.72, and mean normalized bias (MNB)=0.821) was observed for the postmonsoon season due to the better retrieval of both SST MODIS (28 February 2012, R2=0.651, RMSE=2.037, and MNB=0.068) and chl OCM-2 (R2=0.534, RMSE=0.317, and MNB=0.27). Present results confirm that the chl OCM-2 and SST MODIS retrieve nitrate well than the MODIS-derived chl and SST largely due to the better retrieval of chl by OCM-2 than MODIS.

MODIS Collection 6 Data at the National Snow and Ice Data Center (NSIDC)

NASA Astrophysics Data System (ADS)

Fowler, D. K.; Steiker, A. E.; Johnston, T.; Haran, T. M.; Fowler, C.; Wyatt, P.

2015-12-01

For over 15 years, the NASA National Snow and Ice Data Center Distributed Active Archive Center (NSIDC DAAC) has archived and distributed snow and sea ice products derived from the Moderate Resolution Imaging Spectroradiometer (MODIS) instruments on the NASA Earth Observing System (EOS) Aqua and Terra satellites. Collection 6 represents the next revision to NSIDC's MODIS archive, mainly affecting the snow-cover products. Collection 6 specifically addresses the needs of the MODIS science community by targeting the scenarios that have historically confounded snow detection and introduced errors into the snow-cover and fractional snow-cover maps even though MODIS snow-cover maps are typically 90 percent accurate or better under good observing conditions, Collection 6 uses revised algorithms to discriminate between snow and clouds, resolve uncertainties along the edges of snow-covered regions, and detect summer snow cover in mountains. Furthermore, Collection 6 applies modified and additional snow detection screens and new Quality Assessment protocols that enhance the overall accuracy of the snow maps compared with Collection 5. Collection 6 also introduces several new MODIS snow products, including a daily Climate Modelling Grid (CMG) cloud gap-filled (CGF) snow-cover map which generates cloud-free maps by using the most recent clear observations.. The MODIS Collection 6 sea ice extent and ice surface temperature algorithms and products are much the same as Collection 5; however, Collection 6 updates to algorithm inputs—in particular, the L1B calibrated radiances, land and water mask, and cloud mask products—have improved the sea ice outputs. The MODIS sea ice products are currently available at NSIDC, and the snow cover products are soon to follow in 2016 NSIDC offers a variety of methods for obtaining these data. Users can download data directly from an online archive or use the NASA Reverb Search & Order Tool to perform spatial, temporal, and parameter subsetting, reformatting, and re-projection of the data.

How consistent are global long-term satellite LAI products in terms of interannual variability and trend?

NASA Astrophysics Data System (ADS)

Jiang, C.; Ryu, Y.; Fang, H.

2016-12-01

Proper usage of global satellite LAI products requires comprehensive evaluation. To address this issue, the Committee on Earth Observation Satellites (CEOS) Land Product Validation (LPV) subgroup proposed a four-stage validation hierarchy. During the past decade, great efforts have been made following this validation framework, mainly focused on absolute magnitude, seasonal trajectory, and spatial pattern of those global satellite LAI products. However, interannual variability and trends of global satellite LAI products have been investigated marginally. Targeting on this gap, we made an intercomparison between seven global satellite LAI datasets, including four short-term ones: MODIS C5, MODIS C6, GEOV1, MERIS, and three long-term products ones: LAI3g, GLASS, and GLOBMAP. We calculated global annual LAI time series for each dataset, among which we found substantial differences. During the overlapped period (2003 - 2011), MODIS C5, GLASS and GLOBMAP have positive correlation (r > 0.6) between each other, while MODIS C6, GEOV1, MERIS, and LAI3g are highly consistent (r > 0.7) in interannual variations. However, the previous three datasets show negative trends, all of which use MODIS C5 reflectance data, whereas the latter four show positive trends, using MODIS C6, SPOT/VGT, ENVISAT/MERIS, and NOAA/AVHRR, respectively. During the pre-MODIS era (1982 - 1999), the three AVHRR-based datasets (LAI3g, GLASS and GLOBMAP) agree well (r > 0.7), yet all of them show oscillation related with NOAA platform changes. In addition, both GLASS and GLOBMAP show clear cut-points around 2000 when they move from AVHRR to MODIS. Such inconsistency is also visible for GEOV1, which uses SPOT-4 and SPOT-5 before and after 2002. We further investigate the map-to-map deviations among these products. This study highlights that continuous sensor calibration and cross calibration are essential to obtain reliable global LAI time series.

Global Aerosol Remote Sensing from MODIS

NASA Technical Reports Server (NTRS)

Ichoku, Charles; Kaufman, Yoram J.; Remer, Lorraine A.; Chu, D. Allen; Mattoo, Shana; Tanre, Didier; Levy, Robert; Li, Rong-Rong; Martins, Jose V.; Lau, William K. M. (Technical Monitor)

2002-01-01

The physical characteristics, composition, abundance, spatial distribution and dynamics of global aerosols are still very poorly known, and new data from satellite sensors have long been awaited to improve current understanding and to give a boost to the effort in future climate predictions. The derivation of aerosol parameters from the MODerate resolution Imaging Spectro-radiometer (MODIS) sensors aboard the Earth Observing System (EOS) Terra and Aqua polar-orbiting satellites ushers in a new era in aerosol remote sensing from space. Terra and Aqua were launched on December 18, 1999 and May 4, 2002 respectively, with daytime equator crossing times of approximately 10:30 am and 1:30 pm respectively. Several aerosol parameters are retrieved at 10-km spatial resolution (level 2) from MODIS daytime data. The MODIS aerosol algorithm employs different approaches to retrieve parameters over land and ocean surfaces, because of the inherent differences in the solar spectral radiance interaction with these surfaces. The parameters retrieved include: aerosol optical thickness (AOT) at 0.47, 0.55 and 0.66 micron wavelengths over land, and at 0.47, 0.55, 0.66, 0.87, 1.2, 1.6, and 2.1 micron over ocean; Angstrom exponent over land and ocean; and effective radii, and the proportion of AOT contributed by the small mode aerosols over ocean. To ensure the quality of these parameters, a substantial part of the Terra-MODIS aerosol products were validated globally and regionally, based on cross correlation with corresponding parameters derived from ground-based measurements from AERONET (AErosol RObotic NETwork) sun photometers. Similar validation efforts are planned for the Aqua-MODIS aerosol products. The MODIS level 2 aerosol products are operationally aggregated to generate global daily, eight-day (weekly), and monthly products at one-degree spatial resolution (level 3). MODIS aerosol data are used for the detailed study of local, regional, and global aerosol concentration, distribution, and temporal dynamics, as well as for radiative forcing calculations. We show several examples of these results and comparisons with model output.

SCAR-B fires in the tropics: Properties and remote sensing from EOS-MODIS

NASA Astrophysics Data System (ADS)

Kaufman, Yoram J.; Kleidman, Richard G.; King, Michael D.

1998-12-01

Two moderate resolution imaging spectroradiometer (MODIS) instruments are planned for launch in 1999 and 2000 on the NASA Earth Observing System (EOS) AM-1 and EOS PM-1 satellites. The MODIS instrument will sense fires with designated 3.9 and 11 μm channels that saturate at high temperatures (450 and 400 K, respectively). MODIS data will be used to detect fires, to estimate the rate of emission of radiative energy from the fire, and to estimate the fraction of biomass burned in the smoldering phase. The rate of emission of radiative energy is a measure of the rate of combustion of biomass in the fires. In the Smoke, Clouds, and Radiation-Brazil (SCAR-B) experiment the NASA ER-2 aircraft flew the MODIS airborne simulator (MAS) to measure the fire thermal and mid-IR signature with a 50 m spatial resolution. These data are used to observe the thermal properties and sizes of fires in the cerrado grassland and Amazon forests of Brazil and to simulate the performance of the MODIS 1 km resolution fire observations. Although some fires saturated the MAS 3.9 μm channel, all the fires were well within the MODIS instrument saturation levels. Analysis of MAS data over different ecosystems, shows that the fire size varied from single MAS pixels (50×50 m) to over 1 km2. The 1×1 km resolution MODIS instrument can observe only 30-40% of these fires, but the observed fires are responsible for 80 to nearly 100% of the emitted radiative energy and therefore for 80 to 100% of the rate of biomass burning in the region. The rate of emission of radiative energy from the fires correlated very well with the formation of fire burn scars (correlation coefficient = 0.97). This new remotely sensed quantity should be useful in regional estimates of biomass consumption.

Improvement in the cloud mask for Terra MODIS mitigated by electronic crosstalk correction in the 6.7 μm and 8.5 μm channels

NASA Astrophysics Data System (ADS)

Sun, Junqiang; Madhavan, S.; Wang, M.

2016-09-01

MODerate resolution Imaging Spectroradiometer (MODIS), a remarkable heritage sensor in the fleet of Earth Observing System for the National Aeronautics and Space Administration (NASA) is in space orbit on two spacecrafts. They are the Terra (T) and Aqua (A) platforms which tracks the Earth in the morning and afternoon orbits. T-MODIS has continued to operate over 15 years easily surpassing the 6 year design life time on orbit. Of the several science products derived from MODIS, one of the primary derivatives is the MODIS Cloud Mask (MOD035). The cloud mask algorithm incorporates several of the MODIS channels in both reflective and thermal infrared wavelengths to identify cloud pixels from clear sky. Two of the thermal infrared channels used in detecting clouds are the 6.7 μm and 8.5 μm. Based on a difference threshold with the 11 μm channel, the 6.7 μm channel helps in identifying thick high clouds while the 8.5 μm channel being useful for identifying thin clouds. Starting 2010, it had been observed in the cloud mask products that several pixels have been misclassified due to the change in the thermal band radiometry. The long-term radiometric changes in these thermal channels have been attributed to the electronic crosstalk contamination. In this paper, the improvement in cloud detection using the 6.7 μm and 8.5 μm channels are demonstrated using the electronic crosstalk correction. The electronic crosstalk phenomena analysis and characterization were developed using the regular moon observation of MODIS and reported in several works. The results presented in this paper should significantly help in improving the MOD035 product, maintaining the long term dataset from T-MODIS which is important for global change monitoring.

Crosstalk effect and its mitigation in Aqua MODIS middle wave infrared bands

NASA Astrophysics Data System (ADS)

Sun, Junqiang; Madhavan, Sriharsha; Wang, Menghua

2017-09-01

The MODerate-resolution Imaging Spectroradiometer (MODIS) is one of the primary instruments in the National Aeronautics and Space Administration (NASA) Earth Observing System (EOS). The first MODIS instrument was launched in December 1999 on-board the Terra spacecraft. A follow on MODIS was launched on an afternoon orbit in 2002 and is aboard the Aqua spacecraft. Both MODIS instruments are very akin, has 36 bands, among which bands 20 to 25 are Middle Wave Infrared (MWIR) bands covering a wavelength range from approximately 3.750 μm to 4.515 μm. It was found that there was severe contamination in these bands early in mission but the effect has not been characterized and mitigated at the time. The crosstalk effect induces strong striping in the Earth View (EV) images and causes significant retrieval errors in the EV Brightness Temperature (BT) in these bands. An algorithm using a linear approximation derived from on-orbit lunar observations has been developed to correct the crosstalk effect and successfully applied to mitigate the effect in both Terra and Aqua MODIS Long Wave Infrared (LWIR) Photovoltaic (PV) bands. In this paper, the crosstalk effect in the Aqua MWIR bands is investigated and characterized by deriving the crosstalk coefficients using the scheduled Aqua MODIS lunar observations for the MWIR bands. It is shown that there are strong crosstalk contaminations among the five MWIR bands and they also have significant crosstalk contaminations from Short Wave Infrared (SWIR) bands. The crosstalk correction algorithm previously developed is applied to correct the crosstalk effect in these bands. It is demonstrated that the crosstalk correction successfully reduces the striping in the EV images and improves the accuracy of the EV BT in the five bands as was done similarly for LWIR PV bands. The crosstalk correction algorithm should thus be applied to improve both the image quality and radiometric accuracy of the Aqua MODIS MWIR bands Level 1B (L1B) products.

Application of a new leaf area index algorithm to China's landmass using MODIS data for carbon cycle research.

PubMed

Liu, R; Chen, J M; Liu, J; Deng, F; Sun, R

2007-11-01

An operational system was developed for mapping the leaf area index (LAI) for carbon cycle models from the moderate resolution imaging spectroradiometer (MODIS) data. The LAI retrieval algorithm is based on Deng et al. [2006. Algorithm for global leaf area index retrieval using satellite imagery. IEEE Transactions on Geoscience and Remote Sensing, 44, 2219-2229], which uses the 4-scale radiative transfer model [Chen, J.M., Leblancs, 1997. A 4-scale bidirectional reflection model based on canopy architecture. IEEE Transactions on Geoscience and Remote Sensing, 35, 1316-1337] to simulate the relationship of LAI with vegetated surface reflectance measured from space for various spectral bands and solar and view angles. This algorithm has been integrated to the MODISoft platform, a software system designed for processing MODIS data, to generate 250 m, 500 m and 1 km resolution LAI products covering all of China from MODIS MOD02 or MOD09 products. The multi-temporal interpolation method was implemented to remove the residual cloud and other noise in the final LAI product so that it can be directly used in carbon models without further processing. The retrieval uncertainties from land cover data were evaluated using five different data sets available in China. The results showed that mean LAI discrepancies can reach 27%. The current product was also compared with the NASA MODIS MOD15 LAI product to determine the agreement and disagreement of two different product series. LAI values in the MODIS product were found to be 21% larger than those in the new product. These LAI products were compared against ground TRAC measurements in forests in Qilian Mountain and Changbaishan. On average, the new LAI product agrees with the field measurement in Changbaishan within 2%, but the MODIS product is positively biased by about 20%. In Qilian Mountain, where forests are sparse, the new product is lower than field measurements by about 38%, while the MODIS product is larger by about 65%.

On-Orbit Noise Characterization for MODIS Reflective Solar Bands

NASA Technical Reports Server (NTRS)

Xiong, X.; Xie, X.; Angal, A.

2008-01-01

Since launch, the Moderate Resolution Imaging Spectroradiometer (MODIS) has operated successfully on-board the NASA Earth Observing System (EOS) Terra and EOS Aqua spacecraft. MODIS is a passive cross-track scanning radiometer that makes observations in 36 spectral bands with spectral wavelengths from visible (VIS) to long-wave infrared. MODIS bands 1-19 and 26 are the reflective solar bands (RSB) with wavelengths from 0.41 to 2.2 micrometers. They are calibrated on-orbit using an on-board solar diffuser (SD) and a SD stability monitor (SDSM) system. For MODIS RSB, the level 1B calibration algorithm produces top of the atmosphere reflectance factors and radiances for every pixel of the Earth view. The sensor radiometric calibration accuracy, specified at each spectral band's typical scene radiance, is 2% for the RSB reflectance factors and 5% for the RSB radiances. Also specified at the typical scene radiance is the detector signal-to-noise ratio (SNR), a key sensor performance parameter that directly impacts its radiometric calibration accuracy and stability, as well as the image quality. This paper describes an on-orbit SNR characterization approach developed to evaluate and track MODIS RSB detector performance. In order to perform on-orbit SNR characterization, MODIS RSB detector responses to the solar illumination reflected from the SD panel must be corrected for factors due to variations of the solar angles and the SD bi-directional reflectance factor. This approach enables RSB SNR characterization to be performed at different response levels for each detector. On-orbit results show that both Terra and Aqua MODIS RSB detectors have performed well since launch. Except for a few noisy or inoperable detectors which were identified pre-launch, most RSB detectors continue to meet the SNR design requirements and are able to maintain satisfactory short-term stability. A comparison of on-orbit noise characterization results with results derived from pre-launch calibration and characterization are also provided.

MODIS Measures Total U.S. Leaf Area

NASA Technical Reports Server (NTRS)

2002-01-01

This composite image over the continental United States was produced with data acquired by the Moderate-resolution Imaging Spectroradiometer (MODIS) during the period March 24 - April 8, 2000. The image is a map of the density of the plant canopy covering the ground. It is the first in a series of images over the continental U.S. produced by the MODIS Land Discipline Group (refer to this site June 2 and 5 for the next two images in the series). The image is a MODIS data product called 'Leaf Area Index,' which is produced by radiometrically measuring the visible and near infrared energy reflected by vegetation. The Leaf Area Index provides information on the structure of plant canopy, showing how much surface area is covered by green foliage relative to total land surface area. In this image, dark green pixels indicate areas where more than 80 percent of the land surface is covered by green vegetation, light green pixels show where leaves cover about 10 to 50 percent of the land surface, and brown pixels show virtually no leaf coverage. The more leaf area a plant has, the more sunlight it can absorb for photosynthesis. Leaf Area Index is one of a new suite of measurements that scientists use to understand how the Earth's land surfaces are changing over time. Their goal is to use these measurements to refine computer models well enough to simulate how the land biosphere influences the natural cycles of water, carbon, and energy throughout the Earth system. This image is the first of its kind from the MODIS instrument, which launched in December 1999 aboard the Terra spacecraft. MODIS began acquiring scientific data on February 24, 2000, when it first opened its aperture door. The MODIS instrument and Terra spacecraft are both managed by NASA's Goddard Space Flight Center, Greenbelt, MD. Image courtesy Steven Running, MODIS Land Group Member, University of Montana

Intercomparison and validation of MODIS and GLASS leaf area index (LAI) products over mountain areas: A case study in southwestern China

NASA Astrophysics Data System (ADS)

Jin, Huaan; Li, Ainong; Bian, Jinhu; Nan, Xi; Zhao, Wei; Zhang, Zhengjian; Yin, Gaofei

2017-03-01

The validation study of leaf area index (LAI) products over rugged surfaces not only gives additional insights into data quality of LAI products, but deepens understanding of uncertainties regarding land surface process models depended on LAI data over complex terrain. This study evaluated the performance of MODIS and GLASS LAI products using the intercomparison and direct validation methods over southwestern China. The spatio-temporal consistencies, such as the spatial distributions of LAI products and their statistical relationship as a function of topographic indices, time, and vegetation types, respectively, were investigated through intercomparison between MODIS and GLASS products during the period 2011-2013. The accuracies and change ranges of these two products were evaluated against available LAI reference maps over 10 sampling regions which standed for typical vegetation types and topographic gradients in southwestern China. The results show that GLASS LAI exhibits higher percentage of good quality data (i.e. successful retrievals) and smoother temporal profiles than MODIS LAI. The percentage of successful retrievals for MODIS and GLASS is vulnerable to topographic indices, especially to relief amplitude. Besides, the two products do not capture seasonal dynamics of crop, especially in spring over heterogeneously hilly regions. The yearly mean LAI differences between MODIS and GLASS are within ±0.5 for 64.70% of the total retrieval pixels over southwestern China. The spatial distribution of mean differences and temporal profiles of these two products are inclined to be dominated by vegetation types other than topographic indices. The spatial and temporal consistency of these two products is good over most area of grasses/cereal crops; however, it is poor for evergreen broadleaf forest. MODIS presents more reliable change range of LAI than GLASS through comparison with fine resolution reference maps over most of sampling regions. The accuracies of direct validation are obtained for GLASS LAI (r = 0.35, RMSE = 1.72, mean bias = -0.71) and MODIS LAI (r = 0.49, RMSE = 1.75, mean bias = -0.67). GLASS performs similarly to MODIS, but may be marginally inferior to MODIS based on our direct validation results. The validation experience demonstrates the necessity and importance of topographic consideration for LAI estimation over mountain areas. Considerable attention will be paid to the improvements of surface reflectance, retrieval algorithm and land cover types so as to enhance the quality of LAI products in topographically complex terrain.

High Spectral Resolution MODIS Algorithms for Ocean Chlorophyll in Case II Waters

NASA Technical Reports Server (NTRS)

Carder, Kendall L.

2004-01-01

The Case 2 chlorophyll a algorithm is based on a semi-analytical, bio-optical model of remote sensing reflectance, R(sub rs)(lambda), where R(sub rs)(lambda) is defined as the water-leaving radiance, L(sub w)(lambda), divided by the downwelling irradiance just above the sea surface, E(sub d)(lambda,0(+)). The R(sub rs)(lambda) model (Section 3) has two free variables, the absorption coefficient due to phytoplankton at 675 nm, a(sub phi)(675), and the absorption coefficient due to colored dissolved organic matter (CDOM) or gelbstoff at 400 nm, a(sub g)(400). The R(rs) model has several parameters that are fixed or can be specified based on the region and season of the MODIS scene. These control the spectral shapes of the optical constituents of the model. R(sub rs)(lambda(sub i)) values from the MODIS data processing system are placed into the model, the model is inverted, and a(sub phi)(675), a(sub g)(400) (MOD24), and chlorophyll a (MOD21, Chlor_a_3) are computed. Algorithm development is initially focused on tropical, subtropical, and summer temperate environments, and the model is parameterized in Section 4 for three different bio-optical domains: (1) high ratios of photoprotective pigments to chlorophyll and low self-shading, which for brevity, we designate as 'unpackaged'; (2) low ratios and high self-shading, which we designate as 'packaged'; and (3) a transitional or global-average type. These domains can be identified from space by comparing sea-surface temperature to nitrogen-depletion temperatures for each domain (Section 5). Algorithm errors of more than 45% are reduced to errors of less than 30% with this approach, with the greatest effect occurring at the eastern and polar boundaries of the basins. Section 6 provides an expansion of bio-optical domains into high-latitude waters. The 'fully packaged' pigment domain is introduced in this section along with a revised strategy for implementing these variable packaging domains. Chlor_a_3 values derived semi-analytically and Chlor_a_2 values derived empirically using the O Reilly et al. OC3M algorithm from MODIS Terra radiances are compared to field chlorophyll-a concentrations in Sections 7 and 8.

Semi-automated mapping of burned areas in semi-arid ecosystems using MODIS time-series imagery

NASA Astrophysics Data System (ADS)

Hardtke, Leonardo A.; Blanco, Paula D.; Valle, Héctor F. del; Metternicht, Graciela I.; Sione, Walter F.

2015-06-01

Understanding spatial and temporal patterns of burned areas at regional scales, provides a long-term perspective of fire processes and its effects on ecosystems and vegetation recovery patterns, and it is a key factor to design prevention and post-fire restoration plans and strategies. Remote sensing has become the most widely used tool to detect fire affected areas over large tracts of land (e.g., ecosystem, regional and global levels). Standard satellite burned area and active fire products derived from the 500-m Moderate Resolution Imaging Spectroradiometer (MODIS) and the Satellite Pour l'Observation de la Terre (SPOT) are available to this end. However, prior research caution on the use of these global-scale products for regional and sub-regional applications. Consequently, we propose a novel semi-automated algorithm for identification and mapping of burned areas at regional scale. The semi-arid Monte shrublands, a biome covering 240,000 km2 in the western part of Argentina, and exposed to seasonal bushfires was selected as the test area. The algorithm uses a set of the normalized burned ratio index products derived from MODIS time series; using a two-phased cycle, it firstly detects potentially burned pixels while keeping a low commission error (false detection of burned areas), and subsequently labels them as seed patches. Region growing image segmentation algorithms are applied to the seed patches in the second-phase, to define the perimeter of fire affected areas while decreasing omission errors (missing real burned areas). Independently-derived Landsat ETM+ burned-area reference data was used for validation purposes. Additionally, the performance of the adaptive algorithm was assessed against standard global fire products derived from MODIS Aqua and Terra satellites, total burned area (MCD45A1), the active fire algorithm (MOD14); and the L3JRC SPOT VEGETATION 1 km GLOBCARBON products. The correlation between the size of burned areas detected by the global fire products and independently-derived Landsat reference data ranged from R2 = 0.01-0.28, while our algorithm performed showed a stronger correlation coefficient (R2 = 0.96). Our findings confirm prior research calling for caution when using the global fire products locally or regionally.

Mitochondrial diabetes: molecular mechanisms and clinical presentation.

PubMed

Maassen, J Antonie; 'T Hart, Leen M; Van Essen, Einar; Heine, Rob J; Nijpels, Giel; Jahangir Tafrechi, Roshan S; Raap, Anton K; Janssen, George M C; Lemkes, Herman H P J

2004-02-01

Mutations in mitochondrial DNA (mtDNA) associate with various disease states. A few mtDNA mutations strongly associate with diabetes, with the most common mutation being the A3243G mutation in the mitochondrial DNA-encoded tRNA(Leu,UUR) gene. This article describes clinical characteristics of mitochondrial diabetes and its molecular diagnosis. Furthermore, it outlines recent developments in the pathophysiological and molecular mechanisms leading to a diabetic state. A gradual development of pancreatic beta-cell dysfunction upon aging, rather than insulin resistance, is the main mechanism in developing glucose intolerance. Carriers of the A3243G mutation show during a hyperglycemic clamp at 10 mmol/l glucose a marked reduction in first- and second-phase insulin secretion compared with noncarriers. The molecular mechanism by which the A3243G mutation affects insulin secretion may involve an attenuation of cytosolic ADP/ATP levels leading to a resetting of the glucose sensor in the pancreatic beta-cell, such as in maturity-onset diabetes of the young (MODY)-2 patients with mutations in glucokinase. Unlike in MODY2, which is a nonprogressive form of diabetes, mitochondrial diabetes does show a pronounced age-dependent deterioration of pancreatic function indicating involvement of additional processes. Furthermore, one would expect that all mtDNA mutations that affect ATP synthesis lead to diabetes. This is in contrast to clinical observations. The origin of the age-dependent deterioration of pancreatic function in carriers of the A3243G mutation and the contribution of ATP and other mitochondrion-derived factors such as reactive oxygen species to the development of diabetes is discussed.

Results and Validation of MODIS Aerosol Retrievals Over Land and Ocean

NASA Technical Reports Server (NTRS)

Remer, Lorraine; Einaudi, Franco (Technical Monitor)

2001-01-01

The MODerate Resolution Imaging Spectroradiometer (MODIS) instrument aboard the Terra spacecraft has been retrieving aerosol parameters since late February 2000. Initial qualitative checking of the products showed very promising results including matching of land and ocean retrievals at coastlines. Using AERONET ground-based radiometers as our primary validation tool, we have established quantitative validation as well. Our results show that for most aerosol types, the MODIS products fall within the pre-launch estimated uncertainties. Surface reflectance and aerosol model assumptions appear to be sufficiently accurate for the optical thickness retrieval. Dust provides a possible exception, which may be due to non-spherical effects. Over ocean the MODIS products include information on particle size, and these parameters are also validated with AERONET retrievals.

Results and Validation of MODIS Aerosol Retrievals over Land and Ocean

NASA Technical Reports Server (NTRS)

Remer, L. A.; Kaufman, Y. J.; Tanre, D.; Ichoku, C.; Chu, D. A.; Mattoo, S.; Levy, R.; Martins, J. V.; Li, R.-R.; Einaudi, Franco (Technical Monitor)

2000-01-01

The MODerate Resolution Imaging Spectroradiometer (MODIS) instrument aboard the Terra spacecraft has been retrieving aerosol parameters since late February 2000. Initial qualitative checking of the products showed very promising results including matching of land and ocean retrievals at coastlines. Using AERONET ground-based radiometers as our primary validation tool, we have established quantitative validation as well. Our results show that for most aerosol types, the MODIS products fall within the pre-launch estimated uncertainties. Surface reflectance and aerosol model assumptions appear to be sufficiently accurate for the optical thickness retrieval. Dust provides a possible exception, which may be due to non-spherical effects. Over ocean the MODIS products include information on particle size, and these parameters are also validated with AERONET retrievals.

Towards Consistent Aerosol and Cloud Climate Data Records from the Along Track Scanning Radiometer instruments

NASA Astrophysics Data System (ADS)

Thomas, G.

2015-12-01

The ESA Climate Change Initiative (CCI) programme has provided a mechanism for the production of new long-term data records of essential climate variables (ECVs) defined by WMO Global Climate Observing System (GCOS). These include consistent cloud (from the MODIS, AVHRR, ATSR-2 and AATSR instruments) and aerosol (from ATSR-2 and AATSR) products produced using the Optimal Retrieval of Aerosol and Cloud (ORAC) scheme. This talk will present an overview of the newly produced ORAC cloud and aerosol datasets, their evaluation and a joint aerosol-cloud product produced for the 1995-2012 ATSR-2-AATSR data record.

Evolution in the lineament patterns associated to strong earthquakes revealed by satellite observations

NASA Astrophysics Data System (ADS)

Soto-Pinto, C. A.; Arellano-Baeza, A. A.; Ouzounov, D. P.

2011-12-01

We study the temporal evolution of the stress patterns in the crust by using high-resolution (10-300 m) satellite images from MODIS and ASTER satellite sensors. We are able to detect some changes in density and orientation of lineaments preceding earthquake events. A lineament is generally defined as a straight or a somewhat curved feature in the landscape visible in a satellite image as an aligned sequence of pixels of a contrasting intensity compared to the background. The system of lineaments extracted from the satellite images is not identical to the geological lineaments; nevertheless, it generally reflects the structure of the faults and fractures in the Earth's crust. Our analysis has shown that the system of lineaments is very dynamical, and the significant number of lineaments appeared approximately one month before an earthquake, while one month after the earthquake the lineament configuration returned to its initial state. These features were not observed in the test areas that are free of any seismic activity in that period (null hypothesis). We have designed a computational prototype capable to detect lineament evolution and to utilize both ASTER and MODIS satellite L1/L2. We will demonstrate the first successful test results for several Mw> 5 earthquakes in Chile, Peru, China, and California (USA).

Long-Term Time Series of Remote Sensing Observations for Development of Regulatory Water Quality Standards

NASA Technical Reports Server (NTRS)

Blonski, Slawomir; Spiering, Bruce A.; Holekamp, Kara L.

2010-01-01

Water quality standards in the U.S. consist of: designated uses (the services that a water body provides; e.g., drinking water, aquatic life, harvestable species, recreation) . criteria that define the environmental conditions that must be maintained to support the uses For estuaries and coastal waters in the Gulf of Mexico, there are no numeric (quantitative) criteria to protect designated uses from effects of nutrients. This is largely due to the absence of adequate data that would quantitatively link biological conditions to nutrient concentrations. The Gulf of Mexico Alliance, an organization fostering collaboration between the Gulf States and U.S. Federal agencies, has identified the development of the numeric nutrient criteria as a major step leading to reduction in MODIS Products Figure 6. Map of the Mobile Bay with a yellow patch indicating the Bon Secour Bay area selected in this study for averaging water clarity parameters retrieved from MODIS datasets. nutrient inputs to coastal ecosystems. Nutrient enrichment in estuaries and coastal waters can be quantified based on response variables that measure phytoplankton biomass and water clarity. Long-term, spatially and temporally resolved measurements of chlorophyll a concentration, total concentration of suspended solids, and water clarity are needed to establish reference conditions and to quantify stressor-response relationships.

Monitoring Thermal Status of Ecosystems with MODIS Land-Surface Temperature and Vegetation Index Products

NASA Technical Reports Server (NTRS)

Wan, Zhengming

2002-01-01

The global land-surface temperature (LST) and normalized difference vegetation index (NDVI) products retrieved from Moderate Resolution Imaging Spectroradiometer (MODIS) data in 2001 were used in this study. The yearly peak values of NDVI data at 5km grids were used to define six NDVI peak zones from -0.2 to 1 in steps of 0.2, and the monthly NDVI values at each grid were sorted in decreasing order, resulting in 12 layers of NDVI images for each of the NDVI peak zones. The mean and standard deviation of daytime LSTs and day-night LST differences at the grids corresponding to the first layer of NDVI images characterize the thermal status of terrestrial ecosystems in the NDVI peak zones. For the ecosystems in the 0.8-1 NDVI peak zone, daytime LSTs distribute from 0-35 C and day-night LST differences distribute from -2 to 22 C. The daytime LSTs and day-night LST differences corresponding to the remaining layers of NDVI images show that the growth of vegetation is limited at low and high LSTs. LSTs and NDVI may be used to monitor photosynthetic activity and drought, as shown in their applications to a flood-irrigated grassland in California and an unirrigated grassland in Nevada.

Light Diffusion in the Tropical Dry Forest of Costa Rica

NASA Astrophysics Data System (ADS)

Calvo-Rodriguez, S.; Sanchez-Azofeifa, G. A.

2016-06-01

Leaf Area Index (LAI) has been defined as the total leaf area (one-sided) in relation to the ground. LAI has an impact on tree growth and recruitment through the interception of light, which in turn affects primary productivity. Even though many instruments exist for estimating LAI from ground, they are often laborious and costly to run continuously. Measurements of LAI from the field using traditional sensors (e.g., LAI-2000) require multiple visits to the field under very specific sky conditions, making them unsuitable to operate in inaccessible areas and forests with dense vegetation, as well as areas where persistent sunny conditions are the norm like tropical dry forests. With this context, we proposed a methodology to characterize light diffusion based on NDVI and LAI measurements taken from the field in two successional stages in the tropical dry forest of Santa Rosa National Park in Costa Rica. We estimate a "K" coefficient to characterize light diffusion by the canopy, based on field NDVI measurements derived from optical phenology instruments and MODIS NDVI. From the coefficients determined, we estimated LAI values and compared them with ground measurements of LAI. In both successional stages ground measurements of LAI had no significant difference to the tower-derived LAI and the estimated LAI from MODIS NDVI.

Estimate of the Impact of Absorbing Aerosol Over Cloud on the MODIS Retrievals of Cloud Optical Thickness and Effective Radius Using Two Independent Retrievals of Liquid Water Path

NASA Technical Reports Server (NTRS)

Wilcox, Eric M.; Harshvardhan; Platnick, Steven

2009-01-01

Two independent satellite retrievals of cloud liquid water path (LWP) from the NASA Aqua satellite are used to diagnose the impact of absorbing biomass burning aerosol overlaying boundary-layer marine water clouds on the Moderate Resolution Imaging Spectrometer (MODIS) retrievals of cloud optical thickness (tau) and cloud droplet effective radius (r(sub e)). In the MODIS retrieval over oceans, cloud reflectance in the 0.86-micrometer and 2.13-micrometer bands is used to simultaneously retrieve tau and r(sub e). A low bias in the MODIS tau retrieval may result from reductions in the 0.86-micrometer reflectance, which is only very weakly absorbed by clouds, owing to absorption by aerosols in cases where biomass burning aerosols occur above water clouds. MODIS LWP, derived from the product of the retrieved tau and r(sub e), is compared with LWP ocean retrievals from the Advanced Microwave Scanning Radiometer-EOS (AMSR-E), determined from cloud microwave emission that is transparent to aerosols. For the coastal Atlantic southern African region investigated in this study, a systematic difference between AMSR-E and MODIS LWP retrievals is found for stratocumulus clouds over three biomass burning months in 2005 and 2006 that is consistent with above-cloud absorbing aerosols. Biomass burning aerosol is detected using the ultraviolet aerosol index from the Ozone Monitoring Instrument (OMI) on the Aura satellite. The LWP difference (AMSR-E minus MODIS) increases both with increasing tau and increasing OMI aerosol index. During the biomass burning season the mean LWP difference is 14 g per square meters, which is within the 15-20 g per square meter range of estimated uncertainties in instantaneous LWP retrievals. For samples with only low amounts of overlaying smoke (OMI AI less than or equal to 1) the difference is 9.4, suggesting that the impact of smoke aerosols on the mean MODIS LWP is 5.6 g per square meter. Only for scenes with OMI aerosol index greater than 2 does the average LWP difference and the estimated bias in MODIS cloud optical thickness attributable to the impact of overlaying biomass burning aerosol exceed the instantaneous uncertainty in the retrievals.

On the Use of Deep Convective Clouds to Characterize Response versus Scan-angle for MODIS Reflective Solar Bands

NASA Astrophysics Data System (ADS)

Bhatt, R.; Doelling, D. R.; Scarino, B. R.; Gopalan, A.; Haney, C.

2016-12-01

MODIS is a cross-track scanning radiometer with a two-sided scan mirror that images the Earth with an angular field of view of 55° on either side of the nadir. The reflectance of the scan mirror is not uniform and is a function of angle of incidence (AOI), as well as wavelength. This feature of the scan mirror is described by response versus scan-angle (RVS), and was characterized for all reflective solar bands (RSBs), for both MODIS instruments prior to launch. The RVS characteristic of the two MODIS instruments has changed on orbit and, therefore, must be tracked precisely over time to ensure high-quality data in the MODIS products. The MODIS Characterization Support Team (MCST) utilizes the onboard solar diffuser (SD) and lunar measurements to track the RVS changes at two fixed AOIs. The RVS at the remaining AOIs is characterized using the earth view (EV) responses from multiple pseudo-invariant desert sites located in Northern Africa. The drawback of this approach is the assumption that all of the desert sites imaged by the MODIS sensors at different AOIs are radiometrically stable during the same period of time. In addition, the desert samples do not always have continuous AOI coverage as they are limited by the 16-day repeat cycle of the satellite orbit, and by clear-sky conditions over the deserts. This paper proposes a novel and robust approach of characterizing the MODIS RVS using tropical deep convective clouds (DCCs) as an invariant calibration target. The method tracks the monthly DCC response at specified sets of AOIs to compute the temporal RVS changes. Because DCCs are distributed across the entirety of the tropics, they provide a continuum of AOI measurements. Initial results have shown that the Aqua-MODIS Collection 6 band 1 level 1b radiances show considerable residual, or artifact, RVS dependencies, especially on the left side of the cross-track scan. Long-term drifts, up to 2.3%, have been observed at certain AOIs. Temporal correction factors are computed using the DCC trends from 12 scan intervals encompassing all AOIs, and their effectiveness in correcting the observed RVS artifact is evaluated using the Libya-1 pseudo-invariant desert site. The desert and DCC temporal scan dependent trends are reduced to less than 1 standard error after the RVS correction.

Production and Distribution of NASA MODIS Remote Sensing Products

NASA Technical Reports Server (NTRS)

Wolfe, Robert

2007-01-01

The two Moderate Resolution Imaging Spectroradiometer (MODIS) instruments on-board NASA's Earth Observing System (EOS) Terra and Aqua satellites make key measurements for understanding the Earth's terrestrial ecosystems. Global time-series of terrestrial geophysical parameters have been produced from MODIS/Terra for over 7 years and for MODIS/Aqua for more than 4 1/2 years. These well calibrated instruments, a team of scientists and a large data production, archive and distribution systems have allowed for the development of a new suite of high quality product variables at spatial resolutions as fine as 250m in support of global change research and natural resource applications. This talk describes the MODIS Science team's products, with a focus on the terrestrial (land) products, the data processing approach and the process for monitoring and improving the product quality. The original MODIS science team was formed in 1989. The team's primary role is the development and implementation of the geophysical algorithms. In addition, the team provided feedback on the design and pre-launch testing of the instrument and helped guide the development of the data processing system. The key challenges the science team dealt with before launch were the development of algorithms for a new instrument and provide guidance of the large and complex multi-discipline processing system. Land, Ocean and Atmosphere discipline teams drove the processing system requirements, particularly in the area of the processing loads and volumes needed to daily produce geophysical maps of the Earth at resolutions as fine as 250 m. The processing system had to handle a large number of data products, large data volumes and processing loads, and complex processing requirements. Prior to MODIS, daily global maps from heritage instruments, such as Advanced Very High Resolution Radiometer (AVHRR), were not produced at resolutions finer than 5 km. The processing solution evolved into a combination of processing the lower level (Level 1) products and the higher level discipline specific Land and Atmosphere products in the MODIS Science Investigator Lead Processing System (SIPS), the MODIS Adaptive Processing System (MODAPS), and archive and distribution of the Land products to the user community by two of NASA s EOS Distributed Active Archive Centers (DAACs). Recently, a part of MODAPS, the Level 1 and Atmosphere Archive and Distribution System (LAADS), took over the role of archiving and distributing the Level 1 and Atmosphere products to the user community.

The Blue Marble

NASA Technical Reports Server (NTRS)

2002-01-01

This spectacular Moderate Resolution Imaging Spectroradiometer (MODIS) 'blue marble' image is based on the most detailed collection of true-color imagery of the entire Earth to date. Using a collection of satellite-based observations, scientists and visualizers stitched together months of observations of the land surface, oceans, sea ice, and clouds into a seamless, true-color mosaic of every square kilometer (.386 square mile) of our planet. Most of the information contained in this image came from MODIS, illustrating MODIS' outstanding capacity to act as an integrated tool for observing a variety of terrestrial, oceanic, and atmospheric features of the Earth. The land and coastal ocean portions of this image is based on surface observations collected from June through September 2001 and combined, or composited, every eight days to compensate for clouds that might block the satellite's view on any single day. Global ocean color (or chlorophyll) data was used to simulate the ocean surface. MODIS doesn't measure 3-D features of the Earth, so the surface observations were draped over topographic data provided by the U.S. Geological Survey EROS Data Center. MODIS observations of polar sea ice were combined with observations of Antarctica made by the National Oceanic and Atmospheric Administration's AVHRR sensor-the Advanced Very High Resolution Radiometer. The cloud image is a composite of two days of MODIS imagery collected in visible light wavelengths and a third day of thermal infra-red imagery over the poles. A large collection of imagery based on the blue marble in a variety of sizes and formats, including animations and the full (1 km) resolution imagery, is available at the Blue Marble page. Image by Reto Stockli, Render by Robert Simmon. Based on data from the MODIS Science Team

Effect of MODIS Terra Radiometric Calibration Improvements on Collection 6 Deep Blue Aerosol Products: Validation and Terra/Aqua Consistency

NASA Technical Reports Server (NTRS)

Sayer, A. M.; Hsu, N. C.; Bettenhausen, C.; Jeong, M.-J.; Meister, G.

2015-01-01

The Deep Blue (DB) algorithm's primary data product is midvisible aerosol optical depth (AOD). DB applied to Moderate Resolution Imaging Spectroradiometer (MODIS) measurements provides a data record since early 2000 for MODIS Terra and mid-2002 for MODIS Aqua. In the previous data version (Collection 5, C5), DB production from Terra was halted in 2007 due to sensor degradation; the new Collection 6 (C6) has both improved science algorithms and sensor radiometric calibration. This includes additional calibration corrections developed by the Ocean Biology Processing Group to address MODIS Terra's gain, polarization sensitivity, and detector response versus scan angle, meaning DB can now be applied to the whole Terra record. Through validation with Aerosol Robotic Network (AERONET) data, it is shown that the C6 DB Terra AOD quality is stable throughout the mission to date. Compared to the C5 calibration, in recent years the RMS error compared to AERONET is smaller by approximately 0.04 over bright (e.g., desert) and approximately 0.01-0.02 over darker (e.g., vegetated) land surfaces, and the fraction of points in agreement with AERONET within expected retrieval uncertainty higher by approximately 10% and approximately 5%, respectively. Comparisons to the Aqua C6 time series reveal a high level of correspondence between the two MODIS DB data records, with a small positive (Terra-Aqua) average AOD offset <0.01. The analysis demonstrates both the efficacy of the new radiometric calibration efforts and that the C6 MODIS Terra DB AOD data remain stable (to better than 0.01 AOD) throughout the mission to date, suitable for quantitative scientific analyses.

MODIS and GIMMS Inferred Northern Hemisphere Spring Greenup in Responses to Preseason Climate

NASA Astrophysics Data System (ADS)

Xu, X.; Riley, W. J.; Koven, C.; Jia, G.

2017-12-01

We compare the discrepancies in Normalized Difference Vegetation Index (NDVI) inferred spring greenup (SG) between Terra Moderate Resolution Imaging Spectroradiometer (MODIS) and Advanced Very High Resolution Radiometer (AVHRR) instruments carried by the Global Inventory Monitoring and Modeling Studies (GIMMS) in North Hemisphere. The interannual variation of SG inferred by MODIS and GIMMS NDVI is well correlated in the mid to high latitudes. However, the presence of NDVI discrepancies leads to discrepancies in SG with remarkable latitudinal characteristics. MODIS NDVI inferred later SG in the high latitude while earlier SG in the mid to low latitudes, in comparison to GIMMS NDVI inferred SG. MODIS NDVI inferred SG is better correlated to preseason climate. Interannual variation of SG is only sensitive to preseason temperature. The GIMMS SG to temperature sensitivity over two periods implied that the inter-biome SG to temperature sensitivity is relatively stable, but SG to temperature sensitivity decreased over time. Over the same period, MODIS SG to temperature sensitivity is much higher than GIMMS. This decreased sensitivity demonstrated the findings from previous studies with continuous GIMMS NDVI analysis that vegetation growth (indicated by growing season NDVI) to temperature sensitivity is reduced over time and SG advance trend ceased after 2000s. Our results also explained the contradictive findings that SG advance accelerated after 2000s according to the merged GIMMS and MODIS NDVI time series. Despite the found discrepancies, without ground data support, the quality of NDVI and its inferred SG cannot be effectively evaluated. The discrepancies and uncertainties in different NDVI products and its inferred SG may bias the scientific significance of climate-vegetation relationship. The different NDVI products when used together should be first evaluated and harmonized.

MISR Aerosol Product Attributes and Statistical Comparisons with MODIS

NASA Technical Reports Server (NTRS)

Kahn, Ralph A.; Nelson, David L.; Garay, Michael J.; Levy, Robert C.; Bull, Michael A.; Diner, David J.; Martonchik, John V.; Paradise, Susan R.; Hansen, Earl G.; Remer, Lorraine A.

2009-01-01

In this paper, Multi-angle Imaging SpectroRadiometer (MISR) aerosol product attributes are described, including geometry and algorithm performance flags. Actual retrieval coverage is mapped and explained in detail using representative global monthly data. Statistical comparisons are made with coincident aerosol optical depth (AOD) and Angstrom exponent (ANG) retrieval results from the Moderate Resolution Imaging Spectroradiometer (MODIS) instrument. The relationship between these results and the ones previously obtained for MISR and MODIS individually, based on comparisons with coincident ground-truth observations, is established. For the data examined, MISR and MODIS each obtain successful aerosol retrievals about 15% of the time, and coincident MISR-MODIS aerosol retrievals are obtained for about 6%-7% of the total overlap region. Cloud avoidance, glint and oblique-Sun exclusions, and other algorithm physical limitations account for these results. For both MISR and MODIS, successful retrievals are obtained for over 75% of locations where attempts are made. Where coincident AOD retrievals are obtained over ocean, the MISR-MODIS correlation coefficient is about 0.9; over land, the correlation coefficient is about 0.7. Differences are traced to specific known algorithm issues or conditions. Over-ocean ANG comparisons yield a correlation of 0.67, showing consistency in distinguishing aerosol air masses dominated by coarse-mode versus fine-mode particles. Sampling considerations imply that care must be taken when assessing monthly global aerosol direct radiative forcing and AOD trends with these products, but they can be used directly for many other applications, such as regional AOD gradient and aerosol air mass type mapping and aerosol transport model validation. Users are urged to take seriously the published product data-quality statements.

Exploring New Methods of Displaying Bit-Level Quality and Other Flags for MODIS Data

NASA Technical Reports Server (NTRS)

Khalsa, Siri Jodha Singh; Weaver, Ron

2003-01-01

The NASA Distributed Active Archive Center (DAAC) at the National Snow and Ice Data Center (NSIDC) archives and distributes snow and sea ice products derived from the MODerate resolution Imaging Spectroradiometer (MODIS) on board NASA's Terra and Aqua satellites. All MODIS standard products are in the Earth Observing System version of the Hierarchal Data Format (HDF-EOS). The MODIS science team has packed a wealth of information into each HDF-EOS file. In addition to the science data arrays containing the geophysical product, there are often pixel-level Quality Assurance arrays which are important for understanding and interpreting the science data. Currently, researchers are limited in their ability to access and decode information stored as individual bits in many of the MODIS science products. Commercial and public domain utilities give users access, in varying degrees, to the elements inside MODIS HDF-EOS files. However, when attempting to visualize the data, users are confronted with the fact that many of the elements actually represent eight different 1-bit arrays packed into a single byte array. This project addressed the need for researchers to access bit-level information inside MODIS data files. In an previous NASA-funded project (ESDIS Prototype ID 50.0) we developed a visualization tool tailored to polar gridded HDF-EOS data set. This tool,called the Polar researchers to access, geolocate, visualize, and subset data that originate from different sources and have different spatial resolutions but which are placed on a common polar grid. The bit-level visualization function developed under this project was added to PHDIS, resulting in a versatile tool that serves a variety of needs. We call this the EOS Imaging Tool.

Fires and Smoke Observed from the Earth Observing System MODIS Instrument: Products, Validation, and Operational Use

NASA Technical Reports Server (NTRS)

Kaufman, Y. J.; Ichoku, C.; Giglio, L.; Korontzi, S.; Chu, D. A.; Hao, W. M.; Justice, C. O.; Lau, William K. M. (Technical Monitor)

2001-01-01

The MODIS sensor, launched on NASA's Terra satellite at the end of 1999, was designed with 36 spectral channels for a wide array of land, ocean, and atmospheric investigations. MODIS has a unique ability to observe fires, smoke, and burn scars globally. Its main fire detection channels saturate at high brightness temperatures: 500 K at 4 microns and 400 K at 11 microns, which can only be attained in rare circumstances at the I kin fire detection spatial resolution. Thus, unlike other polar orbiting satellite sensors with similar thermal and spatial resolutions, but much lower saturation temperatures (e.g. AVHRR and ATSR), MODIS can distinguish between low intensity ground surface fires and high intensity crown forest fires. Smoke column concentration over land is for the first time being derived from the MOMS solar channels, extending from 0.41 microns to 2.1 microns. The smoke product has been provisionally validated both globally and regionally over southern Africa and central and south America. Burn scars are observed from MODIS even in the presence of smoke, using the 1.2 to 2.1 micron channels. MODIS burned area information is used to estimate pyrogenic emissions. A wide range of these fire and related products and validation are demonstrated for the wild fires that occurred in northwestern United States in the summer of 2000. The MODIS rapid response system and direct broadcast capability is being developed to enable users to obtain and generate data in near real time. It is expected that health and land management organizations will use these systems for monitoring the occurrence of fires and the dispersion of smoke within two to six hours after data acquisition.

Performance of MODIS satellite and mesoscale model based land surface temperature for soil moisture deficit estimation using Neural Network

NASA Astrophysics Data System (ADS)

Srivastava, Prashant K.; Petropoulos, George P.; Gupta, Manika; Islam, Tanvir

2015-04-01

Soil Moisture Deficit (SMD) is a key variable in the water and energy exchanges that occur at the land-surface/atmosphere interface. Monitoring SMD is an alternate method of irrigation scheduling and represents the use of the suitable quantity of water at the proper time by combining measurements of soil moisture deficit. In past it is found that LST has a strong relation to SMD, which can be estimated by MODIS or numerical weather prediction model such as WRF (Weather Research and Forecasting model). By looking into the importance of SMD, this work focused on the application of Artificial Neural Network (ANN) for evaluating its capabilities towards SMD estimation using the LST data estimated from MODIS and WRF mesoscale model. The benchmark SMD estimated from Probability Distribution Model (PDM) over the Brue catchment, Southwest of England, U.K. is used for all the calibration and validation experiments. The performances between observed and simulated SMD are assessed in terms of the Nash-Sutcliffe Efficiency (NSE), the Root Mean Square Error (RMSE) and the percentage of bias (%Bias). The application of the ANN confirmed a high capability WRF and MODIS LST for prediction of SMD. Performance during the ANN calibration and validation showed a good agreement between benchmark and estimated SMD with MODIS LST information with significantly higher performance than WRF simulated LST. The work presented showed the first comprehensive application of LST from MODIS and WRF mesoscale model for hydrological SMD estimation, particularly for the maritime climate. More studies in this direction are recommended to hydro-meteorological community, so that useful information will be accumulated in the technical literature domain for different geographical locations and climatic conditions. Keyword: WRF, Land Surface Temperature, MODIS satellite, Soil Moisture Deficit, Neural Network

Assessment of MODIS On-Orbit Calibration Using a Deep Convective Cloud Technique

NASA Technical Reports Server (NTRS)

Mu, Qiaozhen; Wu, Aisheng; Chang, Tiejun; Angal, Amit; Link, Daniel; Xiong, Xiaoxiong; Doelling, David R.; Bhatt, Rajendra

2016-01-01

The MODerate Resolution Imaging Spectroradiometer (MODIS) sensors onboard Terra and Aqua satellites are calibrated on-orbit with a solar diffuser (SD) for the reflective solar bands (RSB). The MODIS sensors are operating beyond their designed lifetime and hence present a major challenge to maintain the calibration accuracy. The degradation of the onboard SD is tracked by a solar diffuser stability monitor (SDSM) over a wavelength range from 0.41 to 0.94 micrometers. Therefore, any degradation of the SD beyond 0.94 micrometers cannot be captured by the SDSM. The uncharacterized degradation at wavelengths beyond this limit could adversely affect the Level 1B (L1B) product. To reduce the calibration uncertainties caused by the SD degradation, invariant Earth-scene targets are used to monitor and calibrate the MODIS L1B product. The use of deep convective clouds (DCCs) is one such method and particularly significant for the short-wave infrared (SWIR) bands in assessing their long-term calibration stability. In this study, we use the DCC technique to assess the performance of the Terra and Aqua MODIS Collection-6 L1B for RSB 1 3- 7, and 26, with spectral coverage from 0.47 to 2.13 micrometers. Results show relatively stable trends in Terra and Aqua MODIS reflectance for most bands. Careful attention needs to be paid to Aqua band 1, Terra bands 3 and 26 as their trends are larger than 1% during the study time period. We check the feasibility of using the DCC technique to assess the stability in MODIS bands 17-19. The assessment test on response versus scan angle (RVS) calibration shows substantial trend difference for Aqua band 1between different angles of incidence (AOIs). The DCC technique can be used to improve the RVS calibration in the future.

Evaluation of VIIRS, GOCI, and MODIS Collection 6 AOD Retrievals Against Ground Sunphotometer Observations Over East Asia

NASA Technical Reports Server (NTRS)

Xiao, Q.; Zhang, H.; Choi, M.; Li, S.; Kondragunta, S.; Kim, J.; Holben, B.; Levy, R. C.; Liu, Y.

2016-01-01

Persistent high aerosol loadings together with extremely high population densities have raised serious air quality and public health concerns in many urban centers in East Asia. However, ground-based air quality monitoring is relatively limited in this area. Recently, satellite-retrieved Aerosol Optical Depth (AOD) at high resolution has become a powerful tool to characterize aerosol patterns in space and time. Using ground AOD observations from the Aerosol Robotic Network (AERONET) and the Distributed Regional Aerosol Gridded Observation Networks (DRAGON)-Asia Campaign, as well as from handheld sunphotometers, we evaluated emerging aerosol products from the Visible Infrared Imaging Radiometer Suite (VIIRS) aboard the Suomi National Polar-orbiting Partnership (S-NPP), the Geostationary Ocean Color Imager (GOCI) aboard the Communication, Ocean, and Meteorology Satellite (COMS), and Terra and Aqua Moderate Resolution Imaging Spectroradiometer (MODIS) (Collection 6) in East Asia in 2012 and 2013. In the case study in Beijing, when compared with AOD observations from handheld sunphotometers, 51% of VIIRS Environmental Data Record (EDR) AOD, 37% of GOCI AOD, 33% of VIIRS Intermediate Product (IP) AOD, 26% of Terra MODIS C6 3km AOD, and 16% of Aqua MODIS C6 3km AOD fell within the reference expected error (EE) envelope (+/-0.05/+/- 0.15 AOD). Comparing against AERONET AOD over the JapanSouth Korea region, 64% of EDR, 37% of IP, 61% of GOCI, 39% of Terra MODIS, and 56% of Aqua MODIS C6 3km AOD fell within the EE. In general, satellite aerosol products performed better in tracking the day-to-day variability than tracking the spatial variability at high resolutions. The VIIRS EDR and GOCI products provided the most accurate AOD retrievals, while VIIRS IP and MODIS C6 3km products had positive biases.

The Calibration of the DSCOVR EPIC Multiple Visible Channel Instrument Using MODIS and VIIRS as a Reference

NASA Technical Reports Server (NTRS)

Haney, Conor; Doeling, David; Minnis, Patrick; Bhatt, Rajendra; Scarino, Benjamin; Gopalan, Arun

2016-01-01

The Deep Space Climate Observatory (DSCOVR), launched on 11 February 2015, is a satellite positioned near the Lagrange-1 (L1) point, carrying several instruments that monitor space weather, and Earth-view sensors designed for climate studies. The Earth Polychromatic Imaging Camera (EPIC) onboard DSCOVR continuously views the sun-illuminated portion of the Earth with spectral coverage in the UV, VIS, and NIR bands. Although the EPIC instrument does not have any onboard calibration abilities, its constant view of the sunlit Earth disk provides a unique opportunity for simultaneous viewing with several other satellite instruments. This arrangement allows the EPIC sensor to be inter-calibrated using other well-characterized satellite instrument reference standards. Two such instruments with onboard calibration are MODIS, flown on Aqua and Terra, and VIIRS, onboard Suomi-NPP. The MODIS and VIIRS reference calibrations will be transferred to the EPIC instrument using both all-sky ocean and deep convective clouds (DCC) ray-matched EPIC and MODIS/VIIRS radiance pairs. An automated navigation correction routine was developed to more accurately align the EPIC and MODIS/VIIRS granules. The automated navigation correction routine dramatically reduced the uncertainty of the resulting calibration gain based on the EPIC and MODIS/VIIRS radiance pairs. The SCIAMACHY-based spectral band adjustment factors (SBAF) applied to the MODIS/ VIIRS radiances were found to successfully adjust the reference radiances to the spectral response of the specific EPIC channel for over-lapping spectral channels. The SBAF was also found to be effective for the non-overlapping EPIC channel 10. Lastly, both ray-matching techniques found no discernable trends for EPIC channel 7 over the year of publically released EPIC data.

Mody-3: novel HNF1A mutation and the utility of glucagon-like peptide (GLP)-1 receptor agonist therapy.

PubMed

Docena, Maricor K; Faiman, Charles; Stanley, Christine M; Pantalone, Kevin M

2014-02-01

An estimated 1 to 2% of cases of diabetes mellitus have a monogenic basis; however, delayed diagnosis and misdiagnosis as type 1 and 2 diabetes are common. Correctly identifying the molecular basis of an individual's diabetes may significantly alter the management approach to both the patient and his or her relatives. We describe a case of mature onset diabetes of the young (MODY) with sufficient evidence to support the classification of a novel HNF1A (hepatocyte nuclear factor-1-α) mutation as a cause of MODY-3. A 21-year-old Caucasian female presented to our office with a diagnosis of noninsulin-dependent diabetes mellitus (NIDDM) at age 10; glycemia was initially managed with oral antidiabetic (OAD) agents and insulin detemir. The patient reported a strong family history of early-onset NIDDM in both her mother and maternal grandmother, both of whom eventually required insulin therapy to control glycemia. The patient's medical and family history were highly suggestive of maturity-onset diabetes of the young (MODY), and genetic testing was performed. Genetic screening detected a mutation p. Arg200Trp in the HNF1A gene in the patient, her mother, and maternal grandmother, suggesting a diagnosis of MODY-3. This finding resulted in a change of antidiabetic therapy in all 3 patients, including the addition of once-daily liraglutide therapy, which helped improve their glycemic control. Our case report supports the classification of the p. Arg200Trp mutation as a cause of MODY-3. The findings also suggest that glucagon-like peptide-1 (GLP-1) receptor agonist therapy may be of value in managing glycemia in patients with MODY-3.

Early on-orbit calibration results from Aqua MODIS

NASA Astrophysics Data System (ADS)

Xiong, Xiaoxiong; Barnes, William L.

2003-04-01

Aqua MODIS, also known as the MODIS Flight Model 1 (FM1), was launched on May 4, 2002. It opened its nadir aperture door (NAD) on June 24, 2002, beginning its Earth observing mission. In this paper, we present early results from Aqua MODIS on-orbit calibration and characterization and assess the instrument's overall performance. MODIS has 36 spectral bands located on four focal plane assemblies (FPAs). Bands 1-19, and 26 with wavelengths from 0.412 to 2.1 microns are the reflective solar bands (RSB) that are calibrated on-orbit by a solar diffuser (SD). The degradation of the SD is tracked using a solar diffuser stability monitor (SDSM). The bands 20-25, and 27-36 with wavelengths from 3.75 to 14.5 microns are the thermal emissive bands (TEB) that are calibrated on-orbit by a blackbody (BB). Early results indicate that the on-orbit performance has been in good agreement with the predications determined from pre-launch measurements. Except for band 21, the low gain fire band, band 6, known to have some inoperable detectors from pre-launch characterization, and one noisy detector in band 36, all of the detectors' noise characterizations are within their specifications. Examples of the sensor's short-term and limited long-term responses in both TEB and RSB will be provided to illustrate the sensor's on-orbit stability. In addition, we will show some of the improvements that Aqua MODIS made over its predecessor, Terra MODIS (Protoflight Model - PFM), such as removal of the optical leak into the long-wave infrared (LWIR) photoconductive (PC) bands and reduction of electronic crosstalk and out-of-band (OOB) thermal leak into the short-wave infrared (SWIR) bands.

Evaluation of VIIRS, GOCI, and MODIS Collection 6 AOD retrievals against ground sunphotometer observations over East Asia

NASA Astrophysics Data System (ADS)

Xiao, Q.; Zhang, H.; Choi, M.; Li, S.; Kondragunta, S.; Kim, J.; Holben, B.; Levy, R. C.; Liu, Y.

2016-02-01

Persistent high aerosol loadings together with extremely high population densities have raised serious air quality and public health concerns in many urban centers in East Asia. However, ground-based air quality monitoring is relatively limited in this area. Recently, satellite-retrieved Aerosol Optical Depth (AOD) at high resolution has become a powerful tool to characterize aerosol patterns in space and time. Using ground AOD observations from the Aerosol Robotic Network (AERONET) and the Distributed Regional Aerosol Gridded Observation Networks (DRAGON)-Asia Campaign, as well as from handheld sunphotometers, we evaluated emerging aerosol products from the Visible Infrared Imaging Radiometer Suite (VIIRS) aboard the Suomi National Polar-orbiting Partnership (S-NPP), the Geostationary Ocean Color Imager (GOCI) aboard the Communication, Ocean, and Meteorology Satellite (COMS), and Terra and Aqua Moderate Resolution Imaging Spectroradiometer (MODIS) (Collection 6) in East Asia in 2012 and 2013. In the case study in Beijing, when compared with AOD observations from handheld sunphotometers, 51 % of VIIRS Environmental Data Record (EDR) AOD, 37 % of GOCI AOD, 33 % of VIIRS Intermediate Product (IP) AOD, 26 % of Terra MODIS C6 3 km AOD, and 16 % of Aqua MODIS C6 3 km AOD fell within the reference expected error (EE) envelope (±0.05 ± 0.15 AOD). Comparing against AERONET AOD over the Japan-South Korea region, 64 % of EDR, 37 % of IP, 61 % of GOCI, 39 % of Terra MODIS, and 56 % of Aqua MODIS C6 3 km AOD fell within the EE. In general, satellite aerosol products performed better in tracking the day-to-day variability than tracking the spatial variability at high resolutions. The VIIRS EDR and GOCI products provided the most accurate AOD retrievals, while VIIRS IP and MODIS C6 3 km products had positive biases.

Monitoring boreal forest leaf area index across a Siberian burn chronosequence: a MODIS validation study

USGS Publications Warehouse

Cheng, X.; Vierling, Lee; Deering, D.; Conley, A.

2005-01-01

Landscapes containing differing amounts of ecological disturbance provide an excellent opportunity to validate and better understand the emerging Moderate Resolution Imaging Spectrometer (MODIS) vegetation products. Four sites, including 1‐year post‐fire coniferous, 13‐year post‐fire deciduous, 24‐year post‐fire deciduous, and >100 year old post‐fire coniferous forests, were selected to serve as a post‐fire chronosequence in the central Siberian region of Krasnoyarsk (57.3°N, 91.6°E) with which to study the MODIS leaf area index (LAI) and vegetation index (VI) products. The collection 4 MODIS LAI product correctly represented the summer site phenologies, but significantly underestimated the LAI value of the >100 year old coniferous forest during the November to April time period. Landsat 7‐derived enhanced vegetation index (EVI) performed better than normalized difference vegetation index (NDVI) to separate the deciduous and conifer forests, and both indices contained significant correlation with field‐derived LAI values at coniferous forest sites (r 2 = 0.61 and r 2 = 0.69, respectively). The reduced simple ratio (RSR) markedly improved LAI prediction from satellite measurements (r 2 = 0.89) relative to NDVI and EVI. LAI estimates derived from ETM+ images were scaled up to evaluate the 1 km resolution MODIS LAI product; from this analysis MODIS LAI overestimated values in the low LAI deciduous forests (where LAI<5) and underestimated values in the high LAI conifer forests (where LAI>6). Our results indicate that further research on the MODIS LAI product is warranted to better understand and improve remote LAI quantification in disturbed forest landscapes over the course of the year.

Unmanned aerial system nadir reflectance and MODIS nadir BRDF-adjusted surface reflectances intercompared over Greenland

NASA Astrophysics Data System (ADS)

Faulkner Burkhart, John; Kylling, Arve; Schaaf, Crystal B.; Wang, Zhuosen; Bogren, Wiley; Storvold, Rune; Solbø, Stian; Pedersen, Christina A.; Gerland, Sebastian

2017-07-01

Albedo is a fundamental parameter in earth sciences, and many analyses utilize the Moderate Resolution Imaging Spectroradiometer (MODIS) bidirectional reflectance distribution function (BRDF)/albedo (MCD43) algorithms. While derivative albedo products have been evaluated over Greenland, we present a novel, direct comparison with nadir surface reflectance collected from an unmanned aerial system (UAS). The UAS was flown from Summit, Greenland, on 210 km transects coincident with the MODIS sensor overpass on board the Aqua and Terra satellites on 5 and 6 August 2010. Clear-sky acquisitions were available from the overpasses within 2 h of the UAS flights. The UAS was equipped with upward- and downward-looking spectrometers (300-920 nm) with a spectral resolution of 10 nm, allowing for direct integration into the MODIS bands 1, 3, and 4. The data provide a unique opportunity to directly compare UAS nadir reflectance with the MODIS nadir BRDF-adjusted surface reflectance (NBAR) products. The data show UAS measurements are slightly higher than the MODIS NBARs for all bands but agree within their stated uncertainties. Differences in variability are observed as expected due to different footprints of the platforms. The UAS data demonstrate potentially large sub-pixel variability of MODIS reflectance products and the potential to explore this variability using the UAS as a platform. It is also found that, even at the low elevations flown typically by a UAS, reflectance measurements may be influenced by haze if present at and/or below the flight altitude of the UAS. This impact could explain some differences between data from the two platforms and should be considered in any use of airborne platforms.

Remote Sensing of the Radiative and Microphysical Properties of Clouds during TC4: Results from MAS, MASTER, MODIS, and MISR

NASA Technical Reports Server (NTRS)

King, Michael D.; Platnick, Steven; Wind, Galina; Arnold, George T.; Ackerman, Steven A.; Frey, Richard

2007-01-01

The MODIS Airborne Simulator (MAS) and MODIS/ASTER Airborne Simulator (MASTER) were used to obtain measurements of the bidirectional reflectance and brightness temperature of clouds at 50 discrete wavelengths between 0.47 and 14.3 (12.9 m for MASTER). These observations were obtained from the NASA ER-2 aircraft as part of the Tropical Composition, Clouds and Climate Coupling Experiment (TC4) conducted over Central America and surrounding Pacific and Atlantic Oceans between July 17 and August 8, 2007. Multispectral images in eight distinct bands were used to derive a confidence in clear sky (or alternatively the probability of cloud) over land and ocean ecosystems. Based on the results of individual tests run as part of this cloud mask, an algorithm was developed to estimate the phase of the clouds (liquid water, ice, or undetermined phase). Finally, the cloud optical thickness and effective radius were derived for both liquid water and ice clouds that were detected during each flight, using a nearly identical algorithm as that implemented operationally to process MODIS cloud data from the Aqua and Terra satellites (Collection 5). This analysis shows that the cloud mask developed for operational use on MODIS, and tested using MAS and MASTER date in TC4, is quite capable of distinguishing both liquid water and ice clouds during daytime conditions over both land and ocean. The cloud optical thickness and effective radius retrievals used three distinct bands of the MAS (or MASTER), and these results were compared with nearly simultaneous retrievals of MODIS on the Terra spacecraft. Finally, this MODIS-based algorithm was adapted to MISR data to infer the cloud optical thickness of liquid water clouds from MISR. Results of this analysis will be presented and discussed.

The MODIS Aerosol Algorithm, Products and Validation

NASA Technical Reports Server (NTRS)

Remer, L. A.; Kaufman, Y. J.; Tanre, D.; Mattoo, S.; Chu, D. A.; Martins, J. V.; Li, R.-R.; Ichoku, C.; Levy, R. C.; Kleidman, R. G.

2003-01-01

The MODerate resolution Imaging Spectroradiometer (MODIS) aboard both NASA's Terra and Aqua satellites is making near global daily observations of the earth in a wide spectral range. These measurements are used to derive spectral aerosol optical thickness and aerosol size parameters over both land and ocean. The aerosol products available over land include aerosol optical thickness at three visible wavelengths, a measure of the fraction of aerosol optical thickness attributed to the fine mode and several derived parameters including reflected spectral solar flux at top of atmosphere. Over ocean, the aerosol optical thickness is provided in seven wavelengths from 0.47 microns to 2.13 microns. In addition, quantitative aerosol size information includes effective radius of the aerosol and quantitative fraction of optical thickness attributed to the fine mode. Spectral aerosol flux, mass concentration and number of cloud condensation nuclei round out the list of available aerosol products over the ocean. The spectral optical thickness and effective radius of the aerosol over the ocean are validated by comparison with two years of AERONET data gleaned from 133 AERONET stations. 8000 MODIS aerosol retrievals colocated with AERONET measurements confirm that one-standard deviation of MODIS optical thickness retrievals fall within the predicted uncertainty of delta tauapproximately equal to plus or minus 0.03 plus or minus 0.05 tau over ocean and delta tay equal to plus or minus 0.05 plus or minus 0.15 tau over land. 271 MODIS aerosol retrievals co-located with AERONET inversions at island and coastal sites suggest that one-standard deviation of MODIS effective radius retrievals falls within delta r_eff approximately equal to 0.11 microns. The accuracy of the MODIS retrievals suggests that the product can be used to help narrow the uncertainties associated with aerosol radiative forcing of global climate.

Evaluation of the MODIS LAI product using independent lidar-derived LAI: A case study in mixed conifer forest

Treesearch

Jennifer L. R. Jensen; Karen S. Humes; Andrew T. Hudak; Lee A. Vierling; Eric Delmelle

2011-01-01

This study presents an alternative assessment of the MODIS LAI product for a 58,000 ha evergreen needleleaf forest located in the western Rocky Mountain range in northern Idaho by using lidar data to model (R2=0.86, RMSE=0.76) and map LAI at higher resolution across a large number of MODIS pixels in their entirety. Moderate resolution (30 m) lidar-based LAI estimates...

Improving Aerosol and Visibility Forecasting Capabilities Using Current and Future Generations of Satellite Observations

DTIC Science & Technology

2015-08-27

Shi et al. (2011) suggested that large spatial discrepancies exist in operational satellite aerosol products such as MODIS and MISR. Thus, before...to be fully evaluated. In the past few years of the project period, MODIS Deep Blue (DB) and MISR aerosol products have been studied, and schemes for...constructing DA-grade MODIS DB and MISR aerosol products have been developed and transitioned to the Naval Research Laboratory (NRL). Continuing

Application and Evaluation of MODIS LAI, FPAR, and Albedo ...

EPA Pesticide Factsheets

MODIS vegetation and albedo products provide a more realistic representation of surface conditions for input to the WRF/CMAQ modeling system. However, the initial evaluation of ingesting MODIS data into the system showed mixed results, with increased bias and error for 2-m temperature and reduced bias and error for 2-m mixing ratio. Recently, the WRF/CMAQ land surface and boundary laywer processes have been updated. In this study, MODIS vegetation and albedo data are input to the updated WRF/CMAQ meteorology and air quality simulations for 2006 over a North American (NA) 12-km domain. The evaluation of the simulation results shows that the updated WRF/CMAQ system improves 2-m temperature estimates over the pre-update base modeling system estimates. The MODIS vegetation input produces a realistic spring green-up that progresses through time from the south to north. Overall, MODIS input reduces 2-m mixing ration bias during the growing season. The NA west shows larger positive O3 bias during the growing season because of reduced gas phase deposition resulting from lower O3 deposition velocities driven by reduced vegetation cover. The O3 bias increase associated with the realistic vegetation representation indicates that further improvement may be needed in the WRF/CMAQ system. The National Exposure Research Laboratory’s Atmospheric Modeling Division (AMAD) conducts research in support of EPA’s mission to protect human health and the environment. AMAD’s rese

Improved meteorology from an updated WRF/CMAQ modeling ...

EPA Pesticide Factsheets

Realistic vegetation characteristics and phenology from the Moderate Resolution Imaging Spectroradiometer (MODIS) products improve the simulation for the meteorology and air quality modeling system WRF/CMAQ (Weather Research and Forecasting model and Community Multiscale Air Quality model) that employs the Pleim-Xiu land surface model (PX LSM). Recently, PX LSM WRF/CMAQ has been updated in vegetation, soil, and boundary layer processes resulting in improved 2 m temperature (T) and mixing ratio (Q), 10 m wind speed, and surface ozone simulations across the domain compared to the previous version for a period around August 2006. Yearlong meteorology simulations with the updated system demonstrate that MODIS input helps reduce bias of the 2 m Q estimation during the growing season from April to September. Improvements follow the green-up in the southeast from April and move toward the west and north through August. From October to March, MODIS input does not have much influence on the system because vegetation is not as active. The greatest effects of MODIS input include more accurate phenology, better representation of leaf area index (LAI) for various forest ecosystems and agricultural areas, and realistically sparse vegetation coverage in the western drylands. Despite the improved meteorology, MODIS input causes higher bias for the surface O3 simulation in April, August, and October in areas where MODIS LAI is much less than the base LAI. Thus, improvement

Characterizing error distributions for MISR and MODIS optical depth data

NASA Astrophysics Data System (ADS)

Paradise, S.; Braverman, A.; Kahn, R.; Wilson, B.

2008-12-01

The Multi-angle Imaging SpectroRadiometer (MISR) and Moderate Resolution Imaging Spectroradiometer (MODIS) on NASA's EOS satellites collect massive, long term data records on aerosol amounts and particle properties. MISR and MODIS have different but complementary sampling characteristics. In order to realize maximum scientific benefit from these data, the nature of their error distributions must be quantified and understood so that discrepancies between them can be rectified and their information combined in the most beneficial way. By 'error' we mean all sources of discrepancies between the true value of the quantity of interest and the measured value, including instrument measurement errors, artifacts of retrieval algorithms, and differential spatial and temporal sampling characteristics. Previously in [Paradise et al., Fall AGU 2007: A12A-05] we presented a unified, global analysis and comparison of MISR and MODIS measurement biases and variances over lives of the missions. We used AErosol RObotic NETwork (AERONET) data as ground truth and evaluated MISR and MODIS optical depth distributions relative to AERONET using simple linear regression. However, AERONET data are themselves instrumental measurements subject to sources of uncertainty. In this talk, we discuss results from an improved analysis of MISR and MODIS error distributions that uses errors-in-variables regression, accounting for uncertainties in both the dependent and independent variables. We demonstrate on optical depth data, but the method is generally applicable to other aerosol properties as well.

MODIS. Volume 2: MODIS level 1 geolocation, characterization and calibration algorithm theoretical basis document, version 1

NASA Technical Reports Server (NTRS)

Barker, John L.; Harnden, Joann M. K.; Montgomery, Harry; Anuta, Paul; Kvaran, Geir; Knight, ED; Bryant, Tom; Mckay, AL; Smid, Jon; Knowles, Dan, Jr.

1994-01-01

The EOS Moderate Resolution Imaging Spectrometer (MODIS) is being developed by NASA for flight on the Earth Observing System (EOS) series of satellites, the first of which (EOS-AM-1) is scheduled for launch in 1998. This document describes the algorithms and their theoretical basis for the MODIS Level 1B characterization, calibration, and geolocation algorithms which must produce radiometrically, spectrally, and spatially calibrated data with sufficient accuracy so that Global change research programs can detect minute changes in biogeophysical parameters. The document first describes the geolocation algorithm which determines geodetic latitude, longitude, and elevation of each MODIS pixel and the determination of geometric parameters for each observation (satellite zenith angle, satellite azimuth, range to the satellite, solar zenith angle, and solar azimuth). Next, the utilization of the MODIS onboard calibration sources, which consist of the Spectroradiometric Calibration Assembly (SRCA), Solar Diffuser (SD), Solar Diffuser Stability Monitor (SDSM), and the Blackbody (BB), is treated. Characterization of these sources and integration of measurements into the calibration process is described. Finally, the use of external sources, including the Moon, instrumented sites on the Earth (called vicarious calibration), and unsupervised normalization sites having invariant reflectance and emissive properties is treated. Finally, algorithms for generating utility masks needed for scene-based calibration are discussed. Eight appendices are provided, covering instrument design and additional algorithm details.