Water and complex organic chemistry in the cold dark cloud Barnard 5: Observations and Models

NASA Astrophysics Data System (ADS)

Wirström, Eva; Charnley, Steven B.; Taquet, Vianney; Persson, Carina M.

2015-08-01

Studies of complex organic molecule (COM) formation have traditionally been focused on hot cores in regions of massive star formation, where chemistry is driven by the elevated temperatures - evaporating ices and allowing for endothermic reactions in the gas-phase. As more sensitive instruments have become available, the types of objects known to harbour COMs like acetaldehyde (CH3CHO), dimethyl ether (CH3OCH3), methyl formate (CH3OCHO), and ketene (CH2CO) have expanded to include low mass protostars and, recently, even pre-stellar cores. We here report on the first in a new category of objects harbouring COMs: the cold dark cloud Barnard 5 where non-thermal ice desorption induce complex organic chemistry entirely unrelated to local star-formation.Methanol, which only forms efficiently on the surfaces of dust grains, provide evidence of efficient non-thermal desorption of ices in the form of prominent emission peaks offset from protostellar activity and high density tracers in cold molecular clouds. A study with Herschel targeting such methanol emission peaks resulted in the first ever detection of gas-phase water offset from protostellar activity in a dark cloud, at the so called methanol hotspot in Barnard 5.To model the effect a transient injection of ices into the gas-phase has on the chemistry of a cold, dark cloud we have included gas-grain interactions in an existing gas-phase chemical model and connected it to a chemical reaction network updated and expanded to include the formation and destruction paths of the most common COMs. Results from this model will be presented.Ground-based follow-up studies toward the methanol hotspot in B5 have resulted in the detection of a number of COMs, including CH2CO, CH3CHO, CH3OCH3, and CH3OCHO, as well as deuterated methanol (CH2DOH). Observations have also confirmed that COM emission is extended and not localised to a core structure. The implications of these observational and theoretical studies of B5 will be discussed in the context of the gas-grain interaction in dark clouds and its relation to the chemistry of the earliest phases of low-mass star formation.

SPARCCS - Smartphone-Assisted Readiness, Command and Control System

DTIC Science & Technology

2012-06-01

and database needs. By doing this SPARCCS takes advantage of all the capabilities cloud computing has to offer, especially that of disbursed data...40092829/ Microsoft. (2011). Cloud Computing . Retrieved September 24, 2011, http ://www.microsoft.com/industry/government/guides/cloud_computing/2...Command, and Control System) to address these issues. We use smartphones in conjunction with cloud computing to extend the benefits of collaborative

Reproductive parameters of female orangutans (Pongo pygmaeus wurmbii) 1971-2011, a 40-year study at Tanjung Puting National Park, Central Kalimantan, Indonesia.

PubMed

Galdikas, Biruté Mary; Ashbury, Alison

2013-01-01

This study presents reproductive parameter data gathered by direct observation over a 40-year period (1971-2011) of the provisioned free-ranging population of orangutans at Camp Leakey in Tanjung Puting National Park, Central Kalimantan, Indonesia. Age at first reproduction, interbirth interval (IBI), sex ratio at birth, and infant mortality for 19 female orangutans (11 first-generation wild-born ex-captive mothers and 8 second-generation mothers) are included in this analysis. Age at first reproduction among the first-generation mothers was similar to that among wild orangutans, while second-generation mothers had a significantly earlier age at first reproduction. IBIs were similar among first- and second-generation mothers and were significantly shorter than those recorded in studies of wild orangutan populations. There was an expected male-biased sex ratio at birth and a slightly higher than expected rate of infant mortality when compared to wild populations. Infant mortality was primarily seen among second-generation mothers who gave birth before the age of 12, and among first births of some first-generation mothers. These results lend support to the ecological energetics hypothesis, which predicts that increased diet quality leads to a faster rate of reproduction.

Cloud Computing at the Tactical Edge

DTIC Science & Technology

2012-10-01

Cloud Computing (CloudCom ’09). Bejing , China , December 2009. Springer-Verlag, 2009. [Marinelli 2009] Marinelli, E. Hyrax: Cloud Computing on Mobile...offloading is appropriate. Each applica- tion overlay is generated from the same Base VM Image that resides in the cloudlet. In an opera - tional setting...overlay, the following opera - tions execute: 1. The overlay is decompressed using the tools listed in Section 4.2. 2. VM synthesis is performed through

Relative Contributions of Regional and Sector Emissions to the Radiative Forcing of Aerosol-Radiation and Aerosol-Cloud Interactions Based on the AeroCOM Phase III/HTAP2 Experiment

NASA Astrophysics Data System (ADS)

Takemura, T.; Chin, M.

2014-12-01

It is important to understand relative contributions of each regional and sector emission of aerosols and their precursor gases to the regional and global mean radiative forcing of aerosol-radiation and aerosol-cloud interactions. This is because it is useful for international cooperation on controls of air pollution and anthropogenic climate change along most suitable reduction path of their emissions from each region and sector. The Task Force on Hemispheric Transport of Air Pollution (TF HTAP) under the United Nations researches the intercontinental transport of air pollutants including aerosols with strong support of the Aerosol Comparisons between Observations and Models (AeroCOM). The ongoing AeroCOM Phase III/HTAP2 experiment assesses relative contributions of regional and sector sources of aerosols and their precursor gases to the air quality using global aerosol transport models with latest emission inventories. In this study, the extended analyses on the relative contributions of each regional and sector emission to the radiative forcing of aerosol-radiation and aerosol-cloud interactions are done from the AeroCOM Phase III/HTAP2 experiment. Simulated results from MIROC-SPRINTARS and other some global aerosol models participating in the the AeroCOM Phase III/HTAP2 experiment are assessed. Acknowledgements: This study is based on the AeroCOM Phase III/HTAP2 experiment and partly supported by the Environment Research and Technology Development Fund (S-12-3) of the Ministry of the Environment, Japan.

Using Satellite Observations to Evaluate the AeroCOM Volcanic Emissions Inventory and the Dispersal of Volcanic SO2 Clouds in MERRA

NASA Technical Reports Server (NTRS)

Hughes, Eric J.; Krotkov, Nickolay; da Silva, Arlindo; Colarco, Peter

2015-01-01

Simulation of volcanic emissions in climate models requires information that describes the eruption of the emissions into the atmosphere. While the total amount of gases and aerosols released from a volcanic eruption can be readily estimated from satellite observations, information about the source parameters, like injection altitude, eruption time and duration, is often not directly known. The AeroCOM volcanic emissions inventory provides estimates of eruption source parameters and has been used to initialize volcanic emissions in reanalysis projects, like MERRA. The AeroCOM volcanic emission inventory provides an eruptions daily SO2 flux and plume top altitude, yet an eruption can be very short lived, lasting only a few hours, and emit clouds at multiple altitudes. Case studies comparing the satellite observed dispersal of volcanic SO2 clouds to simulations in MERRA have shown mixed results. Some cases show good agreement with observations Okmok (2008), while for other eruptions the observed initial SO2 mass is half of that in the simulations, Sierra Negra (2005). In other cases, the initial SO2 amount agrees with the observations but shows very different dispersal rates, Soufriere Hills (2006). In the aviation hazards community, deriving accurate source terms is crucial for monitoring and short-term forecasting (24-h) of volcanic clouds. Back trajectory methods have been developed which use satellite observations and transport models to estimate the injection altitude, eruption time, and eruption duration of observed volcanic clouds. These methods can provide eruption timing estimates on a 2-hour temporal resolution and estimate the altitude and depth of a volcanic cloud. To better understand the differences between MERRA simulations and volcanic SO2 observations, back trajectory methods are used to estimate the source term parameters for a few volcanic eruptions and compared to their corresponding entry in the AeroCOM volcanic emission inventory. The nature of these mixed results is discussed with respect to the source term estimates.

JPRS Report East Asia Southeast Asia

DTIC Science & Technology

1987-06-16

QUALITY INSPECTED 6 19980610 113 ~«*tSTKIBUT10N STi Approved for public release; Distribution Unlimited REPRODUCEDBY U.S. DEPARTMENTOF COMMERCE...place. Since strikes are legal during a dispute of interest, and new matter bargaining Is interest bargaining, sanctity of agreement will inevitably...relation to a matter that Is the subject of a dis- pute of interest, strikes are legal . • The union will have the right to create a dispute and strike

The Surprising Complexity of Diffuse and Translucent Clouds Toward SGR B2: Diatomics and COMs from 4 GHz to 1.2 THz

NASA Astrophysics Data System (ADS)

McGuire, Brett A.; Corby, Joanna F.; Martin-Drumel, Marie-Aline; Schilke, P.; McCarthy, Michael C.; Remijan, Anthony

2017-06-01

Many diffuse and translucent clouds lie along the line of sight between Earth and the Galactic Center that can be probed through molecular absorption at characteristic velocities. We highlight results of a study of diffuse and translucent clouds along the line of sight to Sgr B2, including SOFIA observations of SH near 1.4 THz and GBT PRIMOS observations from 4 to 50 GHz. We find significant variation in the chemical conditions within these clouds, and the abundances do not appear to correlate with the total optical depth. Additionally, from the GBT observations, we report the first detections of multiple complex organic molecules (COMs) in diffuse and translucent clouds, including CH_3CN, HC_3N, CH_3CHO, and NH_2CHO. We compare the GBT results to complementary observations of SH, H_2S, and others at mm, sub-mm, and THz frequencies from the NRAO 12m, Herschel HIFI, and SOFIA facilities, and comment on the insights into interstellar sulfur chemistry which is currently not well constrained.

Near-infrared light stimuli-responsive synergistic therapy nanoplatforms based on the coordination of tellurium-containing block polymer and cisplatin for cancer treatment.

PubMed

Li, Feng; Li, Tianyu; Cao, Wei; Wang, Lu; Xu, Huaping

2017-07-01

Cisplatin (CDDP) has received worldwide approval for clinical use in the past decades. However, its development in cancer chemotherapy was overshadowed by severe side effects and drug resistance. Herein, we developed a CDDP drug delivery system with high encapsulation efficiency and near-infrared light stimuli-responsive drug release properties based on the coordination of novel tellurium-containing block polymer (PEG-PUTe-PEG) and CDDP. The nanocarriers made from PEG-PUTe-PEG were loaded with CDDP and indocyanine green (ICG) simultaneously. The coordination chemistry between CDDP and tellurium guaranteed the nanocarrier a high stability in plasma and prolonged circulation time in vivo by reducing possible penetration of water molecule into the nanoparticles. Under the stimuli of a near-infrared laser, an amount of ROS can be generated by irradiation of ICG. The tellurium is easily oxidized by ROS because of the low electronegativity of tellurium. The CDDP could be rapidly released from the nanocarriers along with the oxidation of the tellurium at the tumor sites as the oxidized tellurium will weaken the coordination interaction with CDDP. In addition, the encapsulated ICG played a synergistic antitumor effect through photothermal effect with mild laser irradiation. The integrated strategy achieved higher antitumor efficacy and showed minimal side effects compared with the CDDP alone. Copyright © 2017 Elsevier Ltd. All rights reserved.

ProteoCloud: a full-featured open source proteomics cloud computing pipeline.

PubMed

Muth, Thilo; Peters, Julian; Blackburn, Jonathan; Rapp, Erdmann; Martens, Lennart

2013-08-02

We here present the ProteoCloud pipeline, a freely available, full-featured cloud-based platform to perform computationally intensive, exhaustive searches in a cloud environment using five different peptide identification algorithms. ProteoCloud is entirely open source, and is built around an easy to use and cross-platform software client with a rich graphical user interface. This client allows full control of the number of cloud instances to initiate and of the spectra to assign for identification. It also enables the user to track progress, and to visualize and interpret the results in detail. Source code, binaries and documentation are all available at http://proteocloud.googlecode.com. Copyright © 2012 Elsevier B.V. All rights reserved.

VLSI Design, Parallel Computation and Distributed Computing

DTIC Science & Technology

1991-09-30

I U1 TA 3 Daniel Mleitman U. : C ..( -_. .. .s .. . . . . Tom Leighton David Shmoys . ........A ,~i ;.t , 77 Michael Sipser , Di.,t a-., Eva Tardos...Leighton and Plaxton on the construction of a sim- ple c log .- depth circuit (where c < 7.5) that sorts a random permutation with very high probability...puting iPOD( ). Aug-ust 1992. Vancouver. British Columbia (to appear). 20. B 1Xti~ c .. U(.ii. 1. Gopal. M. [Kaplan and S. Kutten, "Distributed Control for

Xyce Parallel Electronic Simulator Users' Guide Version 6.8

DOE Office of Scientific and Technical Information (OSTI.GOV)

Keiter, Eric R.; Aadithya, Karthik Venkatraman; Mei, Ting

This manual describes the use of the Xyce Parallel Electronic Simulator. Xyce has been de- signed as a SPICE-compatible, high-performance analog circuit simulator, and has been written to support the simulation needs of the Sandia National Laboratories electrical designers. This development has focused on improving capability over the current state-of-the-art in the following areas: Capability to solve extremely large circuit problems by supporting large-scale parallel com- puting platforms (up to thousands of processors). This includes support for most popular parallel and serial computers. A differential-algebraic-equation (DAE) formulation, which better isolates the device model package from solver algorithms. This allows onemore » to develop new types of analysis without requiring the implementation of analysis-specific device models. Device models that are specifically tailored to meet Sandia's needs, including some radiation- aware devices (for Sandia users only). Object-oriented code design and implementation using modern coding practices. Xyce is a parallel code in the most general sense of the phrase$-$ a message passing parallel implementation $-$ which allows it to run efficiently a wide range of computing platforms. These include serial, shared-memory and distributed-memory parallel platforms. Attention has been paid to the specific nature of circuit-simulation problems to ensure that optimal parallel efficiency is achieved as the number of processors grows.« less

The Detection of Hot Cores and Complex Organic Molecules in the Large Magellanic Cloud

NASA Astrophysics Data System (ADS)

Sewiło, Marta; Indebetouw, Remy; Charnley, Steven B.; Zahorecz, Sarolta; Oliveira, Joana M.; van Loon, Jacco Th.; Ward, Jacob L.; Chen, C.-H. Rosie; Wiseman, Jennifer; Fukui, Yasuo; Kawamura, Akiko; Meixner, Margaret; Onishi, Toshikazu; Schilke, Peter

2018-02-01

We report the first extragalactic detection of the complex organic molecules (COMs) dimethyl ether (CH3OCH3) and methyl formate (CH3OCHO) with the Atacama Large Millimeter/submillimeter Array (ALMA). These COMs, together with their parent species methanol (CH3OH), were detected toward two 1.3 mm continuum sources in the N 113 star-forming region in the low-metallicity Large Magellanic Cloud (LMC). Rotational temperatures ({T}{rot}∼ 130 K) and total column densities ({N}{rot}∼ {10}16 cm‑2) have been calculated for each source based on multiple transitions of CH3OH. We present the ALMA molecular emission maps for COMs and measured abundances for all detected species. The physical and chemical properties of two sources with COMs detection, and the association with H2O and OH maser emission, indicate that they are hot cores. The fractional abundances of COMs scaled by a factor of 2.5 to account for the lower metallicity in the LMC are comparable to those found at the lower end of the range in Galactic hot cores. Our results have important implications for studies of organic chemistry at higher redshift.

Use of Cloud-Based Graphic Narrative Software in Medical Ethics Teaching

ERIC Educational Resources Information Center

Weber, Alan S.

2015-01-01

Although used as a common pedagogical tool in K-12 education, online graphic narrative ("comics") software has not generally been incorporated into advanced professional or technical education. This contribution reports preliminary data from a study on the use of cloud-based graphics software Pixton.com to teach basic medical ethics…

CloudNeo: a cloud pipeline for identifying patient-specific tumor neoantigens.

PubMed

Bais, Preeti; Namburi, Sandeep; Gatti, Daniel M; Zhang, Xinyu; Chuang, Jeffrey H

2017-10-01

We present CloudNeo, a cloud-based computational workflow for identifying patient-specific tumor neoantigens from next generation sequencing data. Tumor-specific mutant peptides can be detected by the immune system through their interactions with the human leukocyte antigen complex, and neoantigen presence has recently been shown to correlate with anti T-cell immunity and efficacy of checkpoint inhibitor therapy. However computing capabilities to identify neoantigens from genomic sequencing data are a limiting factor for understanding their role. This challenge has grown as cancer datasets become increasingly abundant, making them cumbersome to store and analyze on local servers. Our cloud-based pipeline provides scalable computation capabilities for neoantigen identification while eliminating the need to invest in local infrastructure for data transfer, storage or compute. The pipeline is a Common Workflow Language (CWL) implementation of human leukocyte antigen (HLA) typing using Polysolver or HLAminer combined with custom scripts for mutant peptide identification and NetMHCpan for neoantigen prediction. We have demonstrated the efficacy of these pipelines on Amazon cloud instances through the Seven Bridges Genomics implementation of the NCI Cancer Genomics Cloud, which provides graphical interfaces for running and editing, infrastructure for workflow sharing and version tracking, and access to TCGA data. The CWL implementation is at: https://github.com/TheJacksonLaboratory/CloudNeo. For users who have obtained licenses for all internal software, integrated versions in CWL and on the Seven Bridges Cancer Genomics Cloud platform (https://cgc.sbgenomics.com/, recommended version) can be obtained by contacting the authors. jeff.chuang@jax.org. Supplementary data are available at Bioinformatics online. © The Author(s) 2017. Published by Oxford University Press.

Sustaining the Knowledge Base of the United States Air Force for Future Operations

DTIC Science & Technology

2015-12-10

Comptroller, 53, no. 1 (Winter 2008), 20. 30 “Lagan Web Self-Service: Knowledge Management,” 19 September 2015, http://www.kana.com/lagan- crm ...2015, http://www.kana.com/lagan- crm /knowledge-management. Madden, Leign. “U.S. Air Force Soaring to the Cloud with Office 365,” http

On the Use of Framed Knowledge in Language Comprehension.

DTIC Science & Technology

1978-09-01

knowledge In order to understand a certain stereotyped situation . We must , in other words , harmonize this idea with the opposite one of inodularhy. I...AD A Qb2 680 YAL E UNIV NEW HAVEN CONN DEPT OF cosPute. SCIENCE Fe’S 3/7 UNCLASSIFIED ON THE USE oc FRAMED KNOWLEDGE IN LANGUAGE COIflCHENSION.ftJ...DO JO? ~Jp~QDUC! L1GT3LY. ~~~~~~~~VERI# C) C.) w _ _ _ _ _ _ _ _ _ _ _ _ ON THE USE OF FRAMED KNOWLEDGE IN LANGUAGE COMPREHENSION Running t i t le

Cloud Computing Value Chains: Understanding Businesses and Value Creation in the Cloud

NASA Astrophysics Data System (ADS)

Mohammed, Ashraf Bany; Altmann, Jörn; Hwang, Junseok

Based on the promising developments in Cloud Computing technologies in recent years, commercial computing resource services (e.g. Amazon EC2) or software-as-a-service offerings (e.g. Salesforce. com) came into existence. However, the relatively weak business exploitation, participation, and adoption of other Cloud Computing services remain the main challenges. The vague value structures seem to be hindering business adoption and the creation of sustainable business models around its technology. Using an extensive analyze of existing Cloud business models, Cloud services, stakeholder relations, market configurations and value structures, this Chapter develops a reference model for value chains in the Cloud. Although this model is theoretically based on porter's value chain theory, the proposed Cloud value chain model is upgraded to fit the diversity of business service scenarios in the Cloud computing markets. Using this model, different service scenarios are explained. Our findings suggest new services, business opportunities, and policy practices for realizing more adoption and value creation paths in the Cloud.

Integrating Marine Observatories into a System-of-Systems: Messaging in the US Ocean Observatories Initiative

DTIC Science & Technology

2010-06-01

Woods Hole, MA 02543, USA 3 Raytheon Intelligence and Information Systems, Aurora , CO 80011, USA 4 Scripps Institution of Oceanography, La Jolla...Amazon.com, Amazon Web Services for the Amazon Elastic Compute Cloud ( Amazon EC2). http://aws.amazon.com/ec2/. [4] M. Arrott, B. Demchak, V. Ermagan, C

Performance Engineering Research Institute SciDAC-2 Enabling Technologies Institute Final Report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hall, Mary

2014-09-19

Enhancing the performance of SciDAC applications on petascale systems has high priority within DOE SC. As we look to the future, achieving expected levels of performance on high-end com-puting (HEC) systems is growing ever more challenging due to enormous scale, increasing archi-tectural complexity, and increasing application complexity. To address these challenges, PERI has implemented a unified, tripartite research plan encompassing: (1) performance modeling and prediction; (2) automatic performance tuning; and (3) performance engineering of high profile applications. The PERI performance modeling and prediction activity is developing and refining performance models, significantly reducing the cost of collecting the data upon whichmore » the models are based, and increasing model fidelity, speed and generality. Our primary research activity is automatic tuning (autotuning) of scientific software. This activity is spurred by the strong user preference for automatic tools and is based on previous successful activities such as ATLAS, which has automatically tuned components of the LAPACK linear algebra library, and other re-cent work on autotuning domain-specific libraries. Our third major component is application en-gagement, to which we are devoting approximately 30% of our effort to work directly with Sci-DAC-2 applications. This last activity not only helps DOE scientists meet their near-term per-formance goals, but also helps keep PERI research focused on the real challenges facing DOE computational scientists as they enter the Petascale Era.« less

Community Project for Accelerator Science and Simulation (ComPASS) Final Report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cary, John R.; Cowan, Benjamin M.; Veitzer, S. A.

2016-03-04

Tech-X participated across the full range of ComPASS activities, with efforts in the Energy Frontier primarily through modeling of laser plasma accelerators and dielectric laser acceleration, in the Intensity Frontier primarily through electron cloud modeling, and in Uncertainty Quantification being applied to dielectric laser acceleration. In the following we present the progress and status of our activities for the entire period of the ComPASS project for the different areas of Energy Frontier, Intensity Frontier and Uncertainty Quantification.

RBioCloud: A Light-Weight Framework for Bioconductor and R-based Jobs on the Cloud.

PubMed

Varghese, Blesson; Patel, Ishan; Barker, Adam

2015-01-01

Large-scale ad hoc analytics of genomic data is popular using the R-programming language supported by over 700 software packages provided by Bioconductor. More recently, analytical jobs are benefitting from on-demand computing and storage, their scalability and their low maintenance cost, all of which are offered by the cloud. While biologists and bioinformaticists can take an analytical job and execute it on their personal workstations, it remains challenging to seamlessly execute the job on the cloud infrastructure without extensive knowledge of the cloud dashboard. How analytical jobs can not only with minimum effort be executed on the cloud, but also how both the resources and data required by the job can be managed is explored in this paper. An open-source light-weight framework for executing R-scripts using Bioconductor packages, referred to as `RBioCloud', is designed and developed. RBioCloud offers a set of simple command-line tools for managing the cloud resources, the data and the execution of the job. Three biological test cases validate the feasibility of RBioCloud. The framework is available from http://www.rbiocloud.com.

Electronic structures of of PuX (X=S, Se, Te)

NASA Astrophysics Data System (ADS)

Maehira, Takahiro; Sakai, Eijiro; Tatetsu, Yasutomi

2013-08-01

We have calculated the energy band structures and the Fermi surfaces of PuS, PuSe, and PuTe by using a self-consistent relativistic linear augmented-plane-wave method with the exchange and correlation potential in the local density approximation. In general, the energy bands near the Fermi level are mainly caused by the hybridization between the Pu 5 f and the monochalcogenide p electrons. The obtained main Fermi surfaces consisted of two hole sheets and one electron sheet, which were constructed from the band having both the Pu 5 f state and the monochalcogenide p state.

GOCI Level-2 Processing Improvements and Cloud Motion Analysis

NASA Technical Reports Server (NTRS)

Robinson, Wayne D.

2015-01-01

The Ocean Biology Processing Group has been working with the Korean Institute of Ocean Science and Technology (KIOST) to process geosynchronous ocean color data from the GOCI (Geostationary Ocean Color Instrument) aboard the COMS (Communications, Ocean and Meteorological Satellite). The level-2 processing program, l2gen has GOCI processing as an option. Improvements made to that processing are discussed here as well as a discussion about cloud motion effects.

D Scanning of Live Pigs System and its Application in Body Measurements

NASA Astrophysics Data System (ADS)

Guo, H.; Wang, K.; Su, W.; Zhu, D. H.; Liu, W. L.; Xing, Ch.; Chen, Z. R.

2017-09-01

The shape of a live pig is an important indicator of its health and value, whether for breeding or for carcass quality. This paper implements a prototype system for live single pig body surface 3d scanning based on two consumer depth cameras, utilizing the 3d point clouds data. These cameras are calibrated in advance to have a common coordinate system. The live 3D point clouds stream of moving single pig is obtained by two Xtion Pro Live sensors from different viewpoints simultaneously. A novel detection method is proposed and applied to automatically detect the frames containing pigs with the correct posture from the point clouds stream, according to the geometric characteristics of pig's shape. The proposed method is incorporated in a hybrid scheme, that serves as the preprocessing step in a body measurements framework for pigs. Experimental results show the portability of our scanning system and effectiveness of our detection method. Furthermore, an updated this point cloud preprocessing software for livestock body measurements can be downloaded freely from https://github.com/LiveStockShapeAnalysis to livestock industry, research community and can be used for monitoring livestock growth status.

76 FR 46959 - Large Trader Reporting

Federal Register 2010, 2011, 2012, 2013, 2014

2011-08-03

...://advancedtrading.com/algorithms/showArticle.jhtml?articleID=218401501 (high frequency trading accounts for 73% of U... decisions independently of each other would cloud the Commission's view when investigating for certain...

3D Radiative Transfer in Cloudy Atmospheres

NASA Astrophysics Data System (ADS)

Marshak, Alexander; Davis, Anthony

Developments in three-dimensional cloud radiation over the past few decades are assessed and distilled into this contributed volume. Chapters are authored by subject-matter experts who address a broad audience of graduate students, researchers, and anyone interested in cloud-radiation processes in the solar and infrared spectral regions. After two introductory chapters and a section on the fundamental physics and computational techniques, the volume extensively treats two main application areas: the impact of clouds on the Earth's radiation budget, which is an essential aspect of climate modeling; and remote observation of clouds, especially with the advanced sensors on current and future satellite missions. http://www.springeronline.com/alert/article?a=3D1_1fva7w_1j826l_41z_6

Dynamic electronic institutions in agent oriented cloud robotic systems.

PubMed

Nagrath, Vineet; Morel, Olivier; Malik, Aamir; Saad, Naufal; Meriaudeau, Fabrice

2015-01-01

The dot-com bubble bursted in the year 2000 followed by a swift movement towards resource virtualization and cloud computing business model. Cloud computing emerged not as new form of computing or network technology but a mere remoulding of existing technologies to suit a new business model. Cloud robotics is understood as adaptation of cloud computing ideas for robotic applications. Current efforts in cloud robotics stress upon developing robots that utilize computing and service infrastructure of the cloud, without debating on the underlying business model. HTM5 is an OMG's MDA based Meta-model for agent oriented development of cloud robotic systems. The trade-view of HTM5 promotes peer-to-peer trade amongst software agents. HTM5 agents represent various cloud entities and implement their business logic on cloud interactions. Trade in a peer-to-peer cloud robotic system is based on relationships and contracts amongst several agent subsets. Electronic Institutions are associations of heterogeneous intelligent agents which interact with each other following predefined norms. In Dynamic Electronic Institutions, the process of formation, reformation and dissolution of institutions is automated leading to run time adaptations in groups of agents. DEIs in agent oriented cloud robotic ecosystems bring order and group intellect. This article presents DEI implementations through HTM5 methodology.

Electronic structures of Plutonium compounds with the NaCl-type monochalcogenides structure

NASA Astrophysics Data System (ADS)

Maehira, Takahiro; Tatetsu, Yasutomi

2012-12-01

We calculate the energy band structure and the Fermi surface of PuS, PuSe and PuTe by using a self-consistent relativistic linear augmented-plane-wave method with the exchange and correlation potential in a local density approximation. It is found in common that the energy bands in the vicinity of the Fermi level are mainly due to the hybridization between Pu 5/ and monochalcogenide p electrons. The obtained main Fermi surfaces are composed of two hole sheets and one electron sheet, all of which are constructed from the band having the Pu 5/ state and the monochalcogenide p state.

Study on the Automatic Detection Method and System of Multifunctional Hydrocephalus Shunt

NASA Astrophysics Data System (ADS)

Sun, Xuan; Wang, Guangzhen; Dong, Quancheng; Li, Yuzhong

2017-07-01

Aiming to the difficulty of micro pressure detection and the difficulty of micro flow control in the testing process of hydrocephalus shunt, the principle of the shunt performance detection was analyzed.In this study, the author analyzed the principle of several items of shunt performance detection,and used advanced micro pressure sensor and micro flow peristaltic pump to overcome the micro pressure detection and micro flow control technology.At the same time,This study also puted many common experimental projects integrated, and successfully developed the automatic detection system for a shunt performance detection function, to achieve a test with high precision, high efficiency and automation.

The Department of Defense and the Power of Cloud Computing: Weighing Acceptable Cost Versus Acceptable Risk

DTIC Science & Technology

2016-04-01

the DOD will put DOD systems and data at a risk level comparable to that of their neighbors in the cloud. Just as a user browses a Web page on the...proxy servers for controlling user access to Web pages, and large-scale storage for data management. Each of these devices allows access to the...user to develop applications. Acunetics.com describes Web applications as “computer programs allowing Website visitors to submit and retrieve data

Ice Chemistry in Starless Molecular Cores

NASA Astrophysics Data System (ADS)

Kalvāns, J.

2015-06-01

Starless molecular cores are natural laboratories for interstellar molecular chemistry research. The chemistry of ices in such objects was investigated with a three-phase (gas, surface, and mantle) model. We considered the center part of five starless cores, with their physical conditions derived from observations. The ice chemistry of oxygen, nitrogen, sulfur, and complex organic molecules (COMs) was analyzed. We found that an ice-depth dimension, measured, e.g., in monolayers, is essential for modeling of chemistry in interstellar ices. Particularly, the H2O:CO:CO2:N2:NH3 ice abundance ratio regulates the production and destruction of minor species. It is suggested that photodesorption during the core-collapse period is responsible for the high abundance of interstellar H2O2 and O2H and other species synthesized on the surface. The calculated abundances of COMs in ice were compared to observed gas-phase values. Smaller activation barriers for CO and H2CO hydrogenation may help explain the production of a number of COMs. The observed abundance of methyl formate HCOOCH3 could be reproduced with a 1 kyr, 20 K temperature spike. Possible desorption mechanisms, relevant for COMs, are gas turbulence (ice exposure to interstellar photons) or a weak shock within the cloud core (grain collisions). To reproduce the observed COM abundances with the present 0D model, 1%-10% of ice mass needs to be sublimated. We estimate that the lifetime for starless cores likely does not exceed 1 Myr. Taurus cores are likely to be younger than their counterparts in most other clouds.

The Detection of Hot Cores and Complex Organic Molecules in the Large Magellanic Cloud

NASA Astrophysics Data System (ADS)

Sewilo, Marta; Indebetouw, Remy; Charnley, Steven; Zahorecz, Sarolta; Oliveira, Joana M.; van Loon, Jacco Th.; Ward, Jacob L.; Chen, C.-H. Rosie; Wiseman, Jennifer; Fukui, Yasuo; Kawamura, Akiko; Meixner, Margaret; Onishi, Toshikazu; Schilke, Peter

2018-01-01

We report the detection of the complex organic molecules (COMs) dimethyl ether (CH3OCH3) and methyl formate (CH3OCHO), and their parent species methanol (CH3OH), toward the N113 star-formation region in the Large Magellanic Cloud (LMC) with the Atacama Large Millimeter/submillimeter Array (ALMA). This constitutes the first detection of CH3OCH3 and CH3OCHO outside the Milky Way. We calculated the rotational temperatures (Trot ~ 130 K) and total column densities (Nrot ~ 1016 cm-2) for two sources in N113 with the COMs detection based on multiple transitions of CH3OH, and measured abundances for all detected species. The physical and chemical properties of these sources, and the association with H2O and OH maser emission indicate that they are hot molecular cores. The fractional abundances of COMs scaled by a factor of 2.5 to account for the lower metallicity in the LMC are comparable to those found at the lower end of the range in Galactic hot cores. Our results have important implications for studies of organic chemistry at higher redshift.

Menu-driven cloud computing and resource sharing for R and Bioconductor.

PubMed

Bolouri, Hamid; Dulepet, Rajiv; Angerman, Michael

2011-08-15

We report CRdata.org, a cloud-based, free, open-source web server for running analyses and sharing data and R scripts with others. In addition to using the free, public service, CRdata users can launch their own private Amazon Elastic Computing Cloud (EC2) nodes and store private data and scripts on Amazon's Simple Storage Service (S3) with user-controlled access rights. All CRdata services are provided via point-and-click menus. CRdata is open-source and free under the permissive MIT License (opensource.org/licenses/mit-license.php). The source code is in Ruby (ruby-lang.org/en/) and available at: github.com/seerdata/crdata. hbolouri@fhcrc.org.

Chemical complexity induced by efficient ice evaporation in the Barnard 5 molecular cloud

NASA Astrophysics Data System (ADS)

Taquet, V.; Wirström, E. S.; Charnley, S. B.; Faure, A.; López-Sepulcre, A.; Persson, C. M.

2017-10-01

Cold gas-phase water has recently been detected in a cold dark cloud, Barnard 5 located in the Perseus complex, by targeting methanol peaks as signposts for ice mantle evaporation. Observed morphology and abundances of methanol and water are consistent with a transient non-thermal evaporation process only affecting the outermost ice mantle layers, possibly triggering a more complex chemistry. Here we present the detection of the complex organic molecules (COMs) acetaldehyde (CH3CHO) and methyl formate (CH3OCHO), as well as formic acid (HCOOH) and ketene (CH2CO), and the tentative detection of di-methyl ether (CH3OCH3) towards the "methanol hotspot" of Barnard 5 located between two dense cores using the single dish OSO 20 m, IRAM 30 m, and NRO 45 m telescopes. The high energy cis-conformer of formic acid is detected, suggesting that formic acid is mostly formed at the surface of interstellar grains and then evaporated. The detection of multiple transitions for each species allows us to constrain their abundances through LTE and non-LTE methods. All the considered COMs show similar abundances between 1 and 10% relative to methanol depending on the assumed excitation temperature. The non-detection of glycolaldehyde, an isomer of methyl formate, with a [glycolaldehyde]/[methyl formate] abundance ratio lower than 6%, favours gas phase formation pathways triggered by methanol evaporation. According to their excitation temperatures derived in massive hot cores, formic acid, ketene, and acetaldehyde have been designated as "lukewarm" COMs whereas methyl formate and di-methyl ether were defined as "warm" species. Comparison with previous observations of other types of sources confirms that lukewarm and warm COMs show similar abundances in low-density cold gas whereas the warm COMs tend to be more abundant than the lukewarm species in warm protostellar cores. This abundance evolution suggests either that warm COMs are indeed mostly formed in protostellar environments and/or that lukewarm COMs are efficiently depleted by increased hydrogenation efficiency around protostars.

75 FR 65383 - Notice Pursuant to the National Cooperative Research and Production Act of 1993-Telemanagement Forum

Federal Register 2010, 2011, 2012, 2013, 2014

2010-10-22

..., CA; Compunet Services, Inc., Stockbridge, GA; Cordys, Putten, THE NETHERLANDS; Cosmo Bulgaria Mobile... Inc. to Cloud.com , Cupertino, CA; Globul to Cosmo Bulgaria Mobile EAD(GloBul), Sofia, BULGARIA; CTBC...

Mathematical Analysis of Random Noise - and Appendixes

DTIC Science & Technology

1952-01-01

1 ; y) -4E- - 21- K 2F1 , x 7r T((3 10 28 2F, .-,; 1;) = 2 K~r 1- The higher terms may be corn puted from a(, -_ Z)22Ft(a + 1, a + 1; I;z ) = (2a...cos qt + Q- coB (p + q)5 + 2- cos (p - q)t + V4. the resulting current contains the dc component aQ(1 + )+ajw(f) df (4.5-16) "IA complete discussion...that it simplifies the integration. Thus, putting it in (4.9-3) and setting 2 - 7r¶- JF(iu)utJ,1 (Pu)Ce 𔃼)"’ du (4.9-6) gives ,1,(r) = £ 1 pkh; 3 COB

Towards Efficient Supercomputing: Searching for the Right Efficiency Metric

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hsu, Chung-Hsing; Kuehn, Jeffery A; Poole, Stephen W

2012-01-01

The efficiency of supercomputing has traditionally been in the execution time. In early 2000 s, the concept of total cost of ownership was re-introduced, with the introduction of efficiency measure to include aspects such as energy and space. Yet the supercomputing community has never agreed upon a metric that can cover these aspects altogether and also provide a fair basis for comparison. This paper exam- ines the metrics that have been proposed in the past decade, and proposes a vector-valued metric for efficient supercom- puting. Using this metric, the paper presents a study of where the supercomputing industry has beenmore » and how it stands today with respect to efficient supercomputing.« less

Net-Centric Warfare 2.0: Cloud Computing and the New Age of War

DTIC Science & Technology

2009-02-01

Ellyssa Kroski, author of The Hive Mind: Folksonomies and User-based Tagging, writes: “With the advent of social software and Web 2.0, we usher in a new... Folksonomies and User-Based Tagging, (2007), http://infotangle.blogsome. com/2005/12/07/the-hive-mind- folksonomies -and-user-based-tagging/. 45 Office...www.govexec.com/dailyfed/1007/101007cdam1.htm (accessed February 4, 2009). Kroski, Ellyssa. "The Hive Mind: Folksonomies and User-Based Tagging

Cloud microphysics and aerosol indirect effects in the global climate model ECHAM5-HAM

NASA Astrophysics Data System (ADS)

Lohmann, U.; Stier, P.; Hoose, C.; Ferrachat, S.; Kloster, S.; Roeckner, E.; Zhang, J.

2007-07-01

The double-moment cloud microphysics scheme from ECHAM4 that predicts both the mass mixing ratios and number concentrations of cloud droplets and ice crystals has been coupled to the size-resolved aerosol scheme ECHAM5-HAM. ECHAM5-HAM predicts the aerosol mass, number concentrations and mixing state. The simulated liquid, ice and total water content and the cloud droplet and ice crystal number concentrations as a function of temperature in stratiform mixed-phase clouds between 0 and -35° C agree much better with aircraft observations in the ECHAM5 simulations. ECHAM5 performs better because more realistic aerosol concentrations are available for cloud droplet nucleation and because the Bergeron-Findeisen process is parameterized as being more efficient. The total anthropogenic aerosol effect includes the direct, semi-direct and indirect effects and is defined as the difference in the top-of-the-atmosphere net radiation between present-day and pre-industrial times. It amounts to -1.9 W m-2 in ECHAM5, when a relative humidity dependent cloud cover scheme and aerosol emissions representative for the years 1750 and 2000 from the AeroCom emission inventory are used. The contribution of the cloud albedo effect amounts to -0.7 W m-2. The total anthropogenic aerosol effect is larger when either a statistical cloud cover scheme or a different aerosol emission inventory are employed because the cloud lifetime effect increases.

Enabling Diverse Software Stacks on Supercomputers using High Performance Virtual Clusters.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Younge, Andrew J.; Pedretti, Kevin; Grant, Ryan

While large-scale simulations have been the hallmark of the High Performance Computing (HPC) community for decades, Large Scale Data Analytics (LSDA) workloads are gaining attention within the scientific community not only as a processing component to large HPC simulations, but also as standalone scientific tools for knowledge discovery. With the path towards Exascale, new HPC runtime systems are also emerging in a way that differs from classical distributed com- puting models. However, system software for such capabilities on the latest extreme-scale DOE supercomputing needs to be enhanced to more appropriately support these types of emerging soft- ware ecosystems. In thismore » paper, we propose the use of Virtual Clusters on advanced supercomputing resources to enable systems to support not only HPC workloads, but also emerging big data stacks. Specifi- cally, we have deployed the KVM hypervisor within Cray's Compute Node Linux on a XC-series supercomputer testbed. We also use libvirt and QEMU to manage and provision VMs directly on compute nodes, leveraging Ethernet-over-Aries network emulation. To our knowledge, this is the first known use of KVM on a true MPP supercomputer. We investigate the overhead our solution using HPC benchmarks, both evaluating single-node performance as well as weak scaling of a 32-node virtual cluster. Overall, we find single node performance of our solution using KVM on a Cray is very efficient with near-native performance. However overhead increases by up to 20% as virtual cluster size increases, due to limitations of the Ethernet-over-Aries bridged network. Furthermore, we deploy Apache Spark with large data analysis workloads in a Virtual Cluster, ef- fectively demonstrating how diverse software ecosystems can be supported by High Performance Virtual Clusters.« less

AstroCloud: An Agile platform for data visualization and specific analyzes in 2D and 3D

NASA Astrophysics Data System (ADS)

Molina, F. Z.; Salgado, R.; Bergel, A.; Infante, A.

2017-07-01

Nowadays, astronomers commonly run their own tools, or distributed computational packages, for data analysis and then visualizing the results with generic applications. This chain of processes comes at high cost: (a) analyses are manually applied, they are therefore difficult to be automatized, and (b) data have to be serialized, thus increasing the cost of parsing and saving intermediary data. We are developing AstroCloud, an agile visualization multipurpose platform intended for specific analyses of astronomical images (https://astrocloudy.wordpress.com). This platform incorporates domain-specific languages which make it easily extensible. AstroCloud supports customized plug-ins, which translate into time reduction on data analysis. Moreover, it also supports 2D and 3D rendering, including interactive features in real time. AstroCloud is under development, we are currently implementing different choices for data reduction and physical analyzes.

Comparison of cloud optical depth and cloud mask applying BRDF model-based background surface reflectance

NASA Astrophysics Data System (ADS)

Kim, H. W.; Yeom, J. M.; Woo, S. H.

2017-12-01

Over the thin cloud region, satellite can simultaneously detect the reflectance from thin clouds and land surface. Since the mixed reflectance is not the exact cloud information, the background surface reflectance should be eliminated to accurately distinguish thin cloud such as cirrus. In the previous research, Kim et al (2017) was developed the cloud masking algorithm using the Geostationary Ocean Color Imager (GOCI), which is one of significant instruments for Communication, Ocean, and Meteorology Satellite (COMS). Although GOCI has 8 spectral channels including visible and near infra-red spectral ranges, the cloud masking has quantitatively reasonable result when comparing with MODIS cloud mask (Collection 6 MYD35). Especially, we noticed that this cloud masking algorithm is more specialized in thin cloud detections through the validation with Cloud-Aerosol Lidar and Infrared Pathfinder Satellite Observation (CALIPSO) data. Because this cloud masking method was concentrated on eliminating background surface effects from the top-of-atmosphere (TOA) reflectance. Applying the difference between TOA reflectance and the bi-directional reflectance distribution function (BRDF) model-based background surface reflectance, cloud areas both thick cloud and thin cloud can be discriminated without infra-red channels which were mostly used for detecting clouds. Moreover, when the cloud mask result was utilized as the input data when simulating BRDF model and the optimized BRDF model-based surface reflectance was used for the optimized cloud masking, the probability of detection (POD) has higher value than POD of the original cloud mask. In this study, we examine the correlation between cloud optical depth (COD) and its cloud mask result. Cloud optical depths mostly depend on the cloud thickness, the characteristic of contents, and the size of cloud contents. COD ranges from less than 0.1 for thin clouds to over 1000 for the huge cumulus due to scattering by droplets. With the cloud optical depth of CALIPSO, the cloud masking result can be more improved since we can figure out how deep cloud is. To validate the cloud mask and the correlation result, the atmospheric retrieval will be computed to compare the difference between TOA reflectance and the simulated surface reflectance.

Menu-driven cloud computing and resource sharing for R and Bioconductor

PubMed Central

Bolouri, Hamid; Angerman, Michael

2011-01-01

Summary: We report CRdata.org, a cloud-based, free, open-source web server for running analyses and sharing data and R scripts with others. In addition to using the free, public service, CRdata users can launch their own private Amazon Elastic Computing Cloud (EC2) nodes and store private data and scripts on Amazon's Simple Storage Service (S3) with user-controlled access rights. All CRdata services are provided via point-and-click menus. Availability and Implementation: CRdata is open-source and free under the permissive MIT License (opensource.org/licenses/mit-license.php). The source code is in Ruby (ruby-lang.org/en/) and available at: github.com/seerdata/crdata. Contact: hbolouri@fhcrc.org PMID:21685055

QTL mapping of root traits in phosphorus-deficient soils reveals important genomic regions for improving NDVI and grain yield in barley.

PubMed

Gong, Xue; McDonald, Glenn

2017-09-01

Major QTLs for root rhizosheath size are not correlated with grain yield or yield response to phosphorus. Important QTLs were found to improve phosphorus efficiency. Root traits are important for phosphorus (P) acquisition, but they are often difficult to characterize and their breeding values are seldom assessed under field conditions. This has shed doubts on using seedling-based criteria of root traits to select and breed for P efficiency. Eight root traits were assessed under controlled conditions in a barley doubled-haploid population in soils differing in P levels. The population was also phenotyped for grain yield, normalized difference vegetation index (NDVI), grain P uptake and P utilization efficiency at maturity (PutE GY ) under field conditions. Several quantitative traits loci (QTLs) from the root screening and the field trials were co-incident. QTLs for root rhizosheath size and root diameter explained the highest phenotypic variation in comparison to QTLs for other root traits. Shared QTLs were found between root diameter and grain yield, and total root length and PutE GY . A common major QTL for rhizosheath size and NDVI was mapped to the HvMATE gene marker on chromosome 4H. Collocations between major QTLs for NDVI and grain yield were detected on chromosomes 6H and 7H. When results from BIP and MET were combined, QTLs detected for grain yield were also those QTLs found for NDVI. QTLs qGY5H, qGY6H and qGY7Hb on 7H were robust QTLs in improving P efficiency. A selection of multiple loci may be needed to optimize the breeding outcomes due to the QTL x Environment interaction. We suggest that rhizosheath size alone is not a reliable trait to predict P efficiency or grain yield.

Icing detection from geostationary satellite data using machine learning approaches

NASA Astrophysics Data System (ADS)

Lee, J.; Ha, S.; Sim, S.; Im, J.

2015-12-01

Icing can cause a significant structural damage to aircraft during flight, resulting in various aviation accidents. Icing studies have been typically performed using two approaches: one is a numerical model-based approach and the other is a remote sensing-based approach. The model based approach diagnoses aircraft icing using numerical atmospheric parameters such as temperature, relative humidity, and vertical thermodynamic structure. This approach tends to over-estimate icing according to the literature. The remote sensing-based approach typically uses meteorological satellite/ground sensor data such as Geostationary Operational Environmental Satellite (GOES) and Dual-Polarization radar data. This approach detects icing areas by applying thresholds to parameters such as liquid water path and cloud optical thickness derived from remote sensing data. In this study, we propose an aircraft icing detection approach which optimizes thresholds for L1B bands and/or Cloud Optical Thickness (COT) from Communication, Ocean and Meteorological Satellite-Meteorological Imager (COMS MI) and newly launched Himawari-8 Advanced Himawari Imager (AHI) over East Asia. The proposed approach uses machine learning algorithms including decision trees (DT) and random forest (RF) for optimizing thresholds of L1B data and/or COT. Pilot Reports (PIREPs) from South Korea and Japan were used as icing reference data. Results show that RF produced a lower false alarm rate (1.5%) and a higher overall accuracy (98.8%) than DT (8.5% and 75.3%), respectively. The RF-based approach was also compared with the existing COMS MI and GOES-R icing mask algorithms. The agreements of the proposed approach with the existing two algorithms were 89.2% and 45.5%, respectively. The lower agreement with the GOES-R algorithm was possibly due to the high uncertainty of the cloud phase product from COMS MI.

Host Model Uncertainty in Aerosol Radiative Forcing Estimates - The AeroCom Prescribed Experiment

NASA Astrophysics Data System (ADS)

Stier, P.; Kinne, S.; Bellouin, N.; Myhre, G.; Takemura, T.; Yu, H.; Randles, C.; Chung, C. E.

2012-04-01

Anthropogenic and natural aerosol radiative effects are recognized to affect global and regional climate. However, even for the case of identical aerosol emissions, the simulated direct aerosol radiative forcings show significant diversity among the AeroCom models (Schulz et al., 2006). Our analysis of aerosol absorption in the AeroCom models indicates a larger diversity in the translation from given aerosol radiative properties (absorption optical depth) to actual atmospheric absorption than in the translation of a given atmospheric burden of black carbon to the radiative properties (absorption optical depth). The large diversity is caused by differences in the simulated cloud fields, radiative transfer, the relative vertical distribution of aerosols and clouds, and the effective surface albedo. This indicates that differences in host model (GCM or CTM hosting the aerosol module) parameterizations contribute significantly to the simulated diversity of aerosol radiative forcing. The magnitude of these host model effects in global aerosol model and satellites retrieved aerosol radiative forcing estimates cannot be estimated from the diagnostics of the "standard" AeroCom forcing experiments. To quantify the contribution of differences in the host models to the simulated aerosol radiative forcing and absorption we conduct the AeroCom Prescribed experiment, a simple aerosol model and satellite retrieval intercomparison with prescribed highly idealised aerosol fields. Quality checks, such as diagnostic output of the 3D aerosol fields as implemented in each model, ensure the comparability of the aerosol implementation in the participating models. The simulated forcing variability among the models and retrievals is a direct measure of the contribution of host model assumptions to the uncertainty in the assessment of the aerosol radiative effects. We will present the results from the AeroCom prescribed experiment with focus on the attribution to the simulated variability to parametric and structural model uncertainties. This work will help to prioritise areas for future model improvements and ultimately lead to uncertainty reduction.

Electronic-structure theory of plutonium chalcogenides

NASA Astrophysics Data System (ADS)

Shick, Alexander; Havela, Ladislav; Gouder, Thomas; Rebizant, Jean

2009-03-01

The correlated band theory methods, the around-mean-field LDA + U and dynamical LDA + HIA (Hubbard-I), are applied to investigate the electronic structure of Pu chalcogenides. The LDA + U calculations for PuX (X = S, Se, Te) provide non-magnetic ground state in agreement with the experimental data. Non-integer filling of 5 f-manifold (from approx. 5.6 in PuS to 5.7 PuTe). indicates a mixed valence ground state which combines f5 and f6 multiplets. Making use of the dynamical LDA+HIA method the photoelectron spectra are calculated in good agreement with experimental data. The three-peak feature near EF attributed to 5 f-manifold is well reproduced by LDA + HIA, and follows from mixed valence character of the ground state.

National Dam Safety Program. St. James Lake Dam (Inventory Number NY 779), St. Lawrence River Basin, Jefferson County, New York. Phase I Inspection Report.

DTIC Science & Technology

1980-02-14

cifs is only 3 percent of the Probable kaximum Flood (P11F) which was coi’puted to be 13,670 cfs.’ The 1 /2 PI4F is 7,046 cfs. Therefore, the darn...calnnot pass the 1 /2 P,4F without being overtopped. The downstreami hazard is a 1 ijhtly traveled road thAt travels northe] {o the cantonment area. -g ;:p...c t of t e si l a si ad.u t o l1 1 . The discharg caact oftesiia sindqa fraf1ows in excess of 3 per cent of the Nl (siiaAaaiy=40cs.~~ e spillway is

Challenges in constraining anthropogenic aerosol effects on cloud radiative forcing using present-day spatiotemporal variability.

PubMed

Ghan, Steven; Wang, Minghuai; Zhang, Shipeng; Ferrachat, Sylvaine; Gettelman, Andrew; Griesfeller, Jan; Kipling, Zak; Lohmann, Ulrike; Morrison, Hugh; Neubauer, David; Partridge, Daniel G; Stier, Philip; Takemura, Toshihiko; Wang, Hailong; Zhang, Kai

2016-05-24

A large number of processes are involved in the chain from emissions of aerosol precursor gases and primary particles to impacts on cloud radiative forcing. Those processes are manifest in a number of relationships that can be expressed as factors dlnX/dlnY driving aerosol effects on cloud radiative forcing. These factors include the relationships between cloud condensation nuclei (CCN) concentration and emissions, droplet number and CCN concentration, cloud fraction and droplet number, cloud optical depth and droplet number, and cloud radiative forcing and cloud optical depth. The relationship between cloud optical depth and droplet number can be further decomposed into the sum of two terms involving the relationship of droplet effective radius and cloud liquid water path with droplet number. These relationships can be constrained using observations of recent spatial and temporal variability of these quantities. However, we are most interested in the radiative forcing since the preindustrial era. Because few relevant measurements are available from that era, relationships from recent variability have been assumed to be applicable to the preindustrial to present-day change. Our analysis of Aerosol Comparisons between Observations and Models (AeroCom) model simulations suggests that estimates of relationships from recent variability are poor constraints on relationships from anthropogenic change for some terms, with even the sign of some relationships differing in many regions. Proxies connecting recent spatial/temporal variability to anthropogenic change, or sustained measurements in regions where emissions have changed, are needed to constrain estimates of anthropogenic aerosol impacts on cloud radiative forcing.

Challenges in constraining anthropogenic aerosol effects on cloud radiative forcing using present-day spatiotemporal variability

PubMed Central

Ghan, Steven; Wang, Minghuai; Zhang, Shipeng; Ferrachat, Sylvaine; Gettelman, Andrew; Griesfeller, Jan; Kipling, Zak; Lohmann, Ulrike; Morrison, Hugh; Neubauer, David; Partridge, Daniel G.; Stier, Philip; Takemura, Toshihiko; Wang, Hailong; Zhang, Kai

2016-01-01

A large number of processes are involved in the chain from emissions of aerosol precursor gases and primary particles to impacts on cloud radiative forcing. Those processes are manifest in a number of relationships that can be expressed as factors dlnX/dlnY driving aerosol effects on cloud radiative forcing. These factors include the relationships between cloud condensation nuclei (CCN) concentration and emissions, droplet number and CCN concentration, cloud fraction and droplet number, cloud optical depth and droplet number, and cloud radiative forcing and cloud optical depth. The relationship between cloud optical depth and droplet number can be further decomposed into the sum of two terms involving the relationship of droplet effective radius and cloud liquid water path with droplet number. These relationships can be constrained using observations of recent spatial and temporal variability of these quantities. However, we are most interested in the radiative forcing since the preindustrial era. Because few relevant measurements are available from that era, relationships from recent variability have been assumed to be applicable to the preindustrial to present-day change. Our analysis of Aerosol Comparisons between Observations and Models (AeroCom) model simulations suggests that estimates of relationships from recent variability are poor constraints on relationships from anthropogenic change for some terms, with even the sign of some relationships differing in many regions. Proxies connecting recent spatial/temporal variability to anthropogenic change, or sustained measurements in regions where emissions have changed, are needed to constrain estimates of anthropogenic aerosol impacts on cloud radiative forcing. PMID:26921324

MarDRe: efficient MapReduce-based removal of duplicate DNA reads in the cloud.

PubMed

Expósito, Roberto R; Veiga, Jorge; González-Domínguez, Jorge; Touriño, Juan

2017-09-01

This article presents MarDRe, a de novo cloud-ready duplicate and near-duplicate removal tool that can process single- and paired-end reads from FASTQ/FASTA datasets. MarDRe takes advantage of the widely adopted MapReduce programming model to fully exploit Big Data technologies on cloud-based infrastructures. Written in Java to maximize cross-platform compatibility, MarDRe is built upon the open-source Apache Hadoop project, the most popular distributed computing framework for scalable Big Data processing. On a 16-node cluster deployed on the Amazon EC2 cloud platform, MarDRe is up to 8.52 times faster than a representative state-of-the-art tool. Source code in Java and Hadoop as well as a user's guide are freely available under the GNU GPLv3 license at http://mardre.des.udc.es . rreye@udc.es. © The Author (2017). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com

Cloud-based uniform ChIP-Seq processing tools for modENCODE and ENCODE.

PubMed

Trinh, Quang M; Jen, Fei-Yang Arthur; Zhou, Ziru; Chu, Kar Ming; Perry, Marc D; Kephart, Ellen T; Contrino, Sergio; Ruzanov, Peter; Stein, Lincoln D

2013-07-22

Funded by the National Institutes of Health (NIH), the aim of the Model Organism ENCyclopedia of DNA Elements (modENCODE) project is to provide the biological research community with a comprehensive encyclopedia of functional genomic elements for both model organisms C. elegans (worm) and D. melanogaster (fly). With a total size of just under 10 terabytes of data collected and released to the public, one of the challenges faced by researchers is to extract biologically meaningful knowledge from this large data set. While the basic quality control, pre-processing, and analysis of the data has already been performed by members of the modENCODE consortium, many researchers will wish to reinterpret the data set using modifications and enhancements of the original protocols, or combine modENCODE data with other data sets. Unfortunately this can be a time consuming and logistically challenging proposition. In recognition of this challenge, the modENCODE DCC has released uniform computing resources for analyzing modENCODE data on Galaxy (https://github.com/modENCODE-DCC/Galaxy), on the public Amazon Cloud (http://aws.amazon.com), and on the private Bionimbus Cloud for genomic research (http://www.bionimbus.org). In particular, we have released Galaxy workflows for interpreting ChIP-seq data which use the same quality control (QC) and peak calling standards adopted by the modENCODE and ENCODE communities. For convenience of use, we have created Amazon and Bionimbus Cloud machine images containing Galaxy along with all the modENCODE data, software and other dependencies. Using these resources provides a framework for running consistent and reproducible analyses on modENCODE data, ultimately allowing researchers to use more of their time using modENCODE data, and less time moving it around.

Cloud-based uniform ChIP-Seq processing tools for modENCODE and ENCODE

PubMed Central

2013-01-01

Background Funded by the National Institutes of Health (NIH), the aim of the Model Organism ENCyclopedia of DNA Elements (modENCODE) project is to provide the biological research community with a comprehensive encyclopedia of functional genomic elements for both model organisms C. elegans (worm) and D. melanogaster (fly). With a total size of just under 10 terabytes of data collected and released to the public, one of the challenges faced by researchers is to extract biologically meaningful knowledge from this large data set. While the basic quality control, pre-processing, and analysis of the data has already been performed by members of the modENCODE consortium, many researchers will wish to reinterpret the data set using modifications and enhancements of the original protocols, or combine modENCODE data with other data sets. Unfortunately this can be a time consuming and logistically challenging proposition. Results In recognition of this challenge, the modENCODE DCC has released uniform computing resources for analyzing modENCODE data on Galaxy (https://github.com/modENCODE-DCC/Galaxy), on the public Amazon Cloud (http://aws.amazon.com), and on the private Bionimbus Cloud for genomic research (http://www.bionimbus.org). In particular, we have released Galaxy workflows for interpreting ChIP-seq data which use the same quality control (QC) and peak calling standards adopted by the modENCODE and ENCODE communities. For convenience of use, we have created Amazon and Bionimbus Cloud machine images containing Galaxy along with all the modENCODE data, software and other dependencies. Conclusions Using these resources provides a framework for running consistent and reproducible analyses on modENCODE data, ultimately allowing researchers to use more of their time using modENCODE data, and less time moving it around. PMID:23875683

GTZ: a fast compression and cloud transmission tool optimized for FASTQ files.

PubMed

Xing, Yuting; Li, Gen; Wang, Zhenguo; Feng, Bolun; Song, Zhuo; Wu, Chengkun

2017-12-28

The dramatic development of DNA sequencing technology is generating real big data, craving for more storage and bandwidth. To speed up data sharing and bring data to computing resource faster and cheaper, it is necessary to develop a compression tool than can support efficient compression and transmission of sequencing data onto the cloud storage. This paper presents GTZ, a compression and transmission tool, optimized for FASTQ files. As a reference-free lossless FASTQ compressor, GTZ treats different lines of FASTQ separately, utilizes adaptive context modelling to estimate their characteristic probabilities, and compresses data blocks with arithmetic coding. GTZ can also be used to compress multiple files or directories at once. Furthermore, as a tool to be used in the cloud computing era, it is capable of saving compressed data locally or transmitting data directly into cloud by choice. We evaluated the performance of GTZ on some diverse FASTQ benchmarks. Results show that in most cases, it outperforms many other tools in terms of the compression ratio, speed and stability. GTZ is a tool that enables efficient lossless FASTQ data compression and simultaneous data transmission onto to cloud. It emerges as a useful tool for NGS data storage and transmission in the cloud environment. GTZ is freely available online at: https://github.com/Genetalks/gtz .

Semantic Language Extensions for Implicit Parallel Programming

DTIC Science & Technology

2013-09-01

mobile CPU interacts with a GPU on the same device and a cloud based backend at a remote location presents endless possibilities for solving com...for his contribution to the compiler infrastructure . His creativity in solving research problems and expertise in architecting and implementing...92 5.5.1 Frontend . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 92 5.5.2 Backend

Comparison of aerosol optical properties above clouds between POLDER and AeroCom models over the South East Atlantic Ocean during the fire season

NASA Astrophysics Data System (ADS)

Peers, F.; Bellouin, N.; Waquet, F.; Ducos, F.; Goloub, P.; Mollard, J.; Myhre, G.; Skeie, R. B.; Takemura, T.; Tanré, D.; Thieuleux, F.; Zhang, K.

2016-04-01

Aerosol properties above clouds have been retrieved over the South East Atlantic Ocean during the fire season 2006 using satellite observations from POLDER (Polarization and Directionality of Earth Reflectances). From June to October, POLDER has observed a mean Above-Cloud Aerosol Optical Thickness (ACAOT) of 0.28 and a mean Above-Clouds Single Scattering Albedo (ACSSA) of 0.87 at 550 nm. These results have been used to evaluate the simulation of aerosols above clouds in five Aerosol Comparisons between Observations and Models (Goddard Chemistry Aerosol Radiation and Transport (GOCART), Hadley Centre Global Environmental Model 3 (HadGEM3), European Centre Hamburg Model 5-Hamburg Aerosol Module 2 (ECHAM5-HAM2), Oslo-Chemical Transport Model 2 (OsloCTM2), and Spectral Radiation-Transport Model for Aerosol Species (SPRINTARS)). Most models do not reproduce the observed large aerosol load episodes. The comparison highlights the importance of the injection height and the vertical transport parameterizations to simulate the large ACAOT observed by POLDER. Furthermore, POLDER ACSSA is best reproduced by models with a high imaginary part of black carbon refractive index, in accordance with recent recommendations.

Nephele: a cloud platform for simplified, standardized and reproducible microbiome data analysis.

PubMed

Weber, Nick; Liou, David; Dommer, Jennifer; MacMenamin, Philip; Quiñones, Mariam; Misner, Ian; Oler, Andrew J; Wan, Joe; Kim, Lewis; Coakley McCarthy, Meghan; Ezeji, Samuel; Noble, Karlynn; Hurt, Darrell E

2018-04-15

Widespread interest in the study of the microbiome has resulted in data proliferation and the development of powerful computational tools. However, many scientific researchers lack the time, training, or infrastructure to work with large datasets or to install and use command line tools. The National Institute of Allergy and Infectious Diseases (NIAID) has created Nephele, a cloud-based microbiome data analysis platform with standardized pipelines and a simple web interface for transforming raw data into biological insights. Nephele integrates common microbiome analysis tools as well as valuable reference datasets like the healthy human subjects cohort of the Human Microbiome Project (HMP). Nephele is built on the Amazon Web Services cloud, which provides centralized and automated storage and compute capacity, thereby reducing the burden on researchers and their institutions. https://nephele.niaid.nih.gov and https://github.com/niaid/Nephele. darrell.hurt@nih.gov.

Nephele: a cloud platform for simplified, standardized and reproducible microbiome data analysis

PubMed Central

Weber, Nick; Liou, David; Dommer, Jennifer; MacMenamin, Philip; Quiñones, Mariam; Misner, Ian; Oler, Andrew J; Wan, Joe; Kim, Lewis; Coakley McCarthy, Meghan; Ezeji, Samuel; Noble, Karlynn; Hurt, Darrell E

2018-01-01

Abstract Motivation Widespread interest in the study of the microbiome has resulted in data proliferation and the development of powerful computational tools. However, many scientific researchers lack the time, training, or infrastructure to work with large datasets or to install and use command line tools. Results The National Institute of Allergy and Infectious Diseases (NIAID) has created Nephele, a cloud-based microbiome data analysis platform with standardized pipelines and a simple web interface for transforming raw data into biological insights. Nephele integrates common microbiome analysis tools as well as valuable reference datasets like the healthy human subjects cohort of the Human Microbiome Project (HMP). Nephele is built on the Amazon Web Services cloud, which provides centralized and automated storage and compute capacity, thereby reducing the burden on researchers and their institutions. Availability and implementation https://nephele.niaid.nih.gov and https://github.com/niaid/Nephele Contact darrell.hurt@nih.gov PMID:29028892

Influence of clouds on the cosmic radiation dose rate on aircraft.

PubMed

Pazianotto, Maurício T; Federico, Claudio A; Cortés-Giraldo, Miguel A; Pinto, Marcos Luiz de A; Gonçalez, Odair L; Quesada, José Manuel M; Carlson, Brett V; Palomo, Francisco R

2014-10-01

Flight missions were made in Brazilian territory in 2009 and 2011 with the aim of measuring the cosmic radiation dose rate incident on aircraft in the South Atlantic Magnetic Anomaly and to compare it with Monte Carlo simulations. During one of these flights, small fluctuations were observed in the vicinity of the aircraft with formation of Cumulonimbus clouds. Motivated by these observations, in this work, the authors investigated the relationship between the presence of clouds and the neutron flux and dose rate incident on aircraft using computational simulation. The Monte Carlo simulations were made using the MCNPX and Geant4 codes, considering the incident proton flux at the top of the atmosphere and its propagation and neutron production through several vertically arranged slabs, which were modelled according to the ISO specifications. © The Author 2014. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Hot Cores in Magellanic Clouds

NASA Astrophysics Data System (ADS)

Acharyya, Kinsuk; Herbst, Eric

2018-05-01

We have studied the chemistry of molecules through complex organic molecules (COMs) in complexity in conditions resembling galactic hot molecular cores in the Large and Small Magellanic Clouds using a gas-grain network. To the best of our knowledge, there have been no previous such quantitative studies of hot core chemistry in these low metallicity, dust-poor galaxies. We utilized a physical model that consists of an initial isothermal collapse, followed by a warm-up phase to hot core conditions. Four different temperatures—10, 15, 20, and 25 K—were used for the isothermal collapse phase, considering the fact that these galaxies might have higher dust temperatures in cold regions than observed in the Milky Way. We found that for some abundant species, such as CO and water, hot core abundances are consistent with the reduced elemental abundances of the LMC and SMC. For other less abundant species, such as CH4 and HCN, the calculated abundances are larger when compared with elemental abundances, whereas for species like ammonia they are lower. Our calculations show that some COMs can also be formed in reasonable quantity for hot cores in the Magellanic Clouds when the grain temperature is lower than 25 K. Our results can be compared with recent observations of the hot cores in the high-mass young stellar object (YSO) ST11 and regions A1 and B3 of the star-forming source N113 in the LMC. Model results are in reasonable agreement with the observed abundances and upper limits.

Narrative medicine and death in the ICU: word clouds as a visual legacy.

PubMed

Vanstone, Meredith; Toledo, Feli; Clarke, France; Boyle, Anne; Giacomini, Mita; Swinton, Marilyn; Saunders, Lois; Shears, Melissa; Zytaruk, Nicole; Woods, Anne; Rose, Trudy; Hand-Breckenridge, Tracey; Heels-Ansdell, Diane; Anderson-White, Shelley; Sheppard, Robert; Cook, Deborah

2016-11-24

The Word Cloud is a frequent wish in the 3 Wishes Project developed to nurture peace and ease the grieving process for dying critically ill patients. The objective was to examine whether Word Clouds can act as a heuristic approach to encourage a narrative orientation to medicine. Narrative medicine is an approach which can strengthen relationships, compassion and resilience. Word Clouds were created for 42 dying patients, and we interviewed 37 family members and 73 clinicians about their impact. We conducted a directed qualitative content analysis, using the 3 stages of narrative medicine (attention, representation, affiliation) to examine the narrative medicine potential of Word Clouds. The elicitation of stories for the Word Cloud promotes narrative attention to the patient as a whole person. The distillation of these stories into a list of words and the prioritisation of those words for arrangement in the collage encourages a representation that did not enforce a beginning, middle or end to the story of the patient's life. Strong affiliative connections were achieved through the honouring of patients, caring for families and sharing of memories encouraged through the creation, sharing and discussion of Word Clouds. In the 3 Wishes Project, Word Clouds are 1 way that families and clinicians honour a dying patient. Engaging in the process of making a Word Cloud can promote a narrative orientation to medicine, forging connections, making meaning through reminiscence and leaving a legacy of a loved one. Documenting and displaying words to remember someone in death reaffirms their life. Published by the BMJ Publishing Group Limited. For permission to use (where not already granted under a licence) please go to http://www.bmj.com/company/products-services/rights-and-licensing/.

'Witch Head' Brews Baby Stars

NASA Image and Video Library

2015-10-30

A witch appears to be screaming out into space in this new image from NASA's Wide-Field Infrared Survey Explorer, or WISE. The infrared portrait shows the Witch Head nebula, named after its resemblance to the profile of a wicked witch. Astronomers say the billowy clouds of the nebula, where baby stars are brewing, are being lit up by massive stars. Dust in the cloud is being hit with starlight, causing it to glow with infrared light, which was picked up by WISE's detectors. The Witch Head nebula is estimated to be hundreds of light-years away in the Orion constellation, just off the famous hunter's knee. WISE was recently "awakened" to hunt for asteroids in a program called NEOWISE. The reactivation came after the spacecraft was put into hibernation in 2011, when it completed two full scans of the sky, as planned. Image credit: NASA/JPL-Caltech NASA image use policy. ( http://www.nasa.gov/audience/formedia/features/MP_Photo_Guidelines.html ) NASA Goddard Space Flight Center ( http://www.nasa.gov/centers/goddard/home/index.html ) enables NASA’s mission through four scientific endeavors: Earth Science, Heliophysics, Solar System Exploration, and Astrophysics. Goddard plays a leading role in NASA’s accomplishments by contributing compelling scientific knowledge to advance the Agency’s mission. Follow us on Twitter ( http://twitter.com/NASA_GoddardPix ) Like us on Facebook ( http://www.facebook.com/pages/Greenbelt-MD/NASA-Goddard/395013845897?ref=tsd ) Find us on Instagram ( http://instagram.com/nasagoddard?vm=grid )

Effect of stochastic grain heating on cold dense clouds chemistry

NASA Astrophysics Data System (ADS)

Chen, Long-Fei; Chang, Qiang; Xi, Hong-Wei

2018-06-01

The temperatures of dust grains play important roles in the chemical evolution of molecular clouds. Unlike large grains, the temperature fluctuations of small grains induced by photons may be significant. Therefore, if the grain size distribution is included in astrochemical models, the temperatures of small dust grains may not be assumed to be constant. We simulate a full gas-grain reaction network with a set of dust grain radii using the classical MRN grain size distribution and include the temperature fluctuations of small dust grains. Monte Carlo method is used to simulate the real-time dust grain's temperature fluctuations which is caused by the external low energy photons and the internal cosmic ray induced secondary photons. The increase of dust grains radii as ice mantles accumulate on grain surfaces is also included in our models. We found that surface CO2 abundances in models with grain size distribution and temperature fluctuations are more than one order of magnitude larger than those with single grain size. Small amounts of terrestrial complex organic molecules (COMs) can also be formed on small grains due to the temperature spikes induced by external low energy photons. However, cosmic ray induced secondary photons overheat small grains so that surface CO sublime and less radicals are formed on grains surfaces, thus the production of surface CO2 and COMs decreases by about one order of magnitude. The overheating of small grains can be offset by grain growth so that the formation of surface CO2 and COMs becomes more efficient.

Satellite view of the extreme haze clouds over China

NASA Astrophysics Data System (ADS)

Minghui, T.; Chen, L.; Wang, Z.

2013-12-01

Minghui Tao*, Liangfu Chen, Zifeng Wang State Key Laboratory of Remote Sensing Science, Jointly Sponsored by Institute of Remote Sensing and Digital Earth of Chinese Academy of Sciences and Beijing Normal University, Beijing 100101, China *Email: tmh1985@163.com ABSTRACT: In the past decades, great increases in anthropogenic emissions have caused dramatic changes in air quality and regional climate in China, which are further complicated by the natural processes such as dust events and atmospheric dynamics such as variations in intensity of the Asian monsoon. The common urban photochemistry smog, haze, and fog-haze pollution lead to poor air quality in major cities in eastern and middle parts of China. On the other hand, the heavy aerosol loading exerts marked influences on radiation, clouds, and precipitation over China. Satellites usually observed widespread haze clouds over eastern China. In most of previous studies, the dense haze clouds were directly connected with accumulation of anthropogenic emissions. However, satellite observations show that formation processes of haze clouds and local pollution near surface were different. Understanding the connections and interactions between haze clouds and local anthropogenic emissions is essential in chemistry and climate modeling of the aerosols over China. In January 2013, durative haze clouds covered most parts of eastern China, leading to extreme pollution events in many cities. With integrated A-train satellite observations and ground measurements, we investigated variations, optical properties, vertical structures as well as formation process of the extreme haze clouds over eastern China. Satellite-surface results were compared to analyze relations between the haze clouds and surface pollution. Different from traditional views, our results reveal that variation and formation of the haze clouds were driven by large-scale natural processes rather than local anthropogenic emissions. Figure 1. Aqua MODIS true color images of the haze clouds over eastern China on Jan 10, 2013.

Development of an Innovative Interactive Virtual Classroom System for K-12 Education Using Google App Engine

ERIC Educational Resources Information Center

Mumba, Frackson; Zhu, Mengxia

2013-01-01

This paper presents a Simulation-based interactive Virtual ClassRoom web system (SVCR: www.vclasie.com) powered by the state-of-the-art cloud computing technology from Google SVCR integrates popular free open-source math, science and engineering simulations and provides functions such as secure user access control and management of courses,…

Bringing numerous methods for expression and promoter analysis to a public cloud computing service.

PubMed

Polanski, Krzysztof; Gao, Bo; Mason, Sam A; Brown, Paul; Ott, Sascha; Denby, Katherine J; Wild, David L

2018-03-01

Every year, a large number of novel algorithms are introduced to the scientific community for a myriad of applications, but using these across different research groups is often troublesome, due to suboptimal implementations and specific dependency requirements. This does not have to be the case, as public cloud computing services can easily house tractable implementations within self-contained dependency environments, making the methods easily accessible to a wider public. We have taken 14 popular methods, the majority related to expression data or promoter analysis, developed these up to a good implementation standard and housed the tools in isolated Docker containers which we integrated into the CyVerse Discovery Environment, making these easily usable for a wide community as part of the CyVerse UK project. The integrated apps can be found at http://www.cyverse.org/discovery-environment, while the raw code is available at https://github.com/cyversewarwick and the corresponding Docker images are housed at https://hub.docker.com/r/cyversewarwick/. info@cyverse.warwick.ac.uk or D.L.Wild@warwick.ac.uk. Supplementary data are available at Bioinformatics online. © The Author(s) 2017. Published by Oxford University Press.

Falco: a quick and flexible single-cell RNA-seq processing framework on the cloud.

PubMed

Yang, Andrian; Troup, Michael; Lin, Peijie; Ho, Joshua W K

2017-03-01

Single-cell RNA-seq (scRNA-seq) is increasingly used in a range of biomedical studies. Nonetheless, current RNA-seq analysis tools are not specifically designed to efficiently process scRNA-seq data due to their limited scalability. Here we introduce Falco, a cloud-based framework to enable paralellization of existing RNA-seq processing pipelines using big data technologies of Apache Hadoop and Apache Spark for performing massively parallel analysis of large scale transcriptomic data. Using two public scRNA-seq datasets and two popular RNA-seq alignment/feature quantification pipelines, we show that the same processing pipeline runs 2.6-145.4 times faster using Falco than running on a highly optimized standalone computer. Falco also allows users to utilize low-cost spot instances of Amazon Web Services, providing a ∼65% reduction in cost of analysis. Falco is available via a GNU General Public License at https://github.com/VCCRI/Falco/. j.ho@victorchang.edu.au. Supplementary data are available at Bioinformatics online. © The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com

Vegetation-zonation patterns across a temperate mountain cloud forest ecotone are not explained by variation in hydraulic functioning or water relations.

PubMed

Berry, Z Carter; Johnson, Daniel M; Reinhardt, Keith

2015-09-01

Many studies have demonstrated linkages between the occurrence of fog and ecophysiological functioning in cloud forests, but few have investigated hydraulic functioning as a determining factor that explains sharp changes in vegetation. The objective of this study was to compare the plant water status during cloud-immersed and non-immersed conditions and hydraulic vulnerability in branches and roots of species across a temperate, mountain fog ecotone. Because cloud forests are often dark, cool and very moist, we expected cloud forest species to have less drought-tolerant characteristics (i.e., lower Pe and P50-the pressures required to induce a 12 and 50% loss in hydraulic conductivity, respectively) relative to non-cloud forest species in adjacent (lower elevation) forests. Additionally, due to the ability of cloud forest species to absorb cloud-fog water, we predicted greater improvements in hydraulic functioning during fog in cloud forest species relative to non-cloud forest species. Across the cloud forest ecotone, most species measured were very resistant to losses in conductivity with branch P50 values from -4.5 to -6.0 MPa, hydraulic safety margins (Ψmin - P50) >1.5 MPa and low calculated hydraulic conductivity losses. Roots had greater vulnerabilities, with P50 values ranging from -1.4 to -2.5 MPa, leading to greater predicted losses in conductivity (∼20%). Calculated values suggested strong losses of midday leaf hydraulic conductance in three of the four species, supporting the hydraulic segmentation hypothesis. In both cloud forest and hardwood species, Ψs were greater on foggy days than sunny days, demonstrating the importance of fog periods to plant water balance across fog regimes. Thus, frequent fog did not result in systemic changes in hydraulic functioning or vulnerability to embolism across our temperate cloud forest ecotone. Finally, roots functioned with lower hydraulic conductivity than branches, suggesting that they may serve as more sensitive indicators of hydraulic functioning in these mesic, foggy ecosystems. © The Author 2015. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Biomedical cloud computing with Amazon Web Services.

PubMed

Fusaro, Vincent A; Patil, Prasad; Gafni, Erik; Wall, Dennis P; Tonellato, Peter J

2011-08-01

In this overview to biomedical computing in the cloud, we discussed two primary ways to use the cloud (a single instance or cluster), provided a detailed example using NGS mapping, and highlighted the associated costs. While many users new to the cloud may assume that entry is as straightforward as uploading an application and selecting an instance type and storage options, we illustrated that there is substantial up-front effort required before an application can make full use of the cloud's vast resources. Our intention was to provide a set of best practices and to illustrate how those apply to a typical application pipeline for biomedical informatics, but also general enough for extrapolation to other types of computational problems. Our mapping example was intended to illustrate how to develop a scalable project and not to compare and contrast alignment algorithms for read mapping and genome assembly. Indeed, with a newer aligner such as Bowtie, it is possible to map the entire African genome using one m2.2xlarge instance in 48 hours for a total cost of approximately $48 in computation time. In our example, we were not concerned with data transfer rates, which are heavily influenced by the amount of available bandwidth, connection latency, and network availability. When transferring large amounts of data to the cloud, bandwidth limitations can be a major bottleneck, and in some cases it is more efficient to simply mail a storage device containing the data to AWS (http://aws.amazon.com/importexport/). More information about cloud computing, detailed cost analysis, and security can be found in references.

Study on the cloud detection of GOCI by using the simulated surface reflectance from BRDF-model for the land application and meteorological utilization

NASA Astrophysics Data System (ADS)

Kim, Hye-Won; Yeom, Jong-Min; Woo, Sun-Hee; Chae, Tae-Byeong

2016-04-01

COMS (Communication, Ocean, and Meteorological Satellite) was launched at French Guiana Kourou space center on 27 June 2010. Geostationary Ocean Color Imager (GOCI), which is the first ocean color geostationary satellite in the world for observing the ocean phenomena, is able to obtain the scientific data per an hour from 00UTC to 07UTC. Moreover, the spectral channels of GOCI would enable not only monitoring for the ocean, but for extracting the information of the land surface over the Korean Peninsula, Japan, and Eastern China. Since it is extremely important to utilize GOCI data accurately for the land application, cloud pixels over the surface have to be removed. Unfortunately, infra-red (IR) channels that can easily detect the water vapor with the cloud top temperature, are not included in the GOCI sensor. In this paper, the advanced cloud masking algorithm will be proposed with visible and near-IR (NIR) bands that are within GOCI bands. The main obstacle of cloud masking with GOCI is how to handle the high variable surface reflectance, which is mainly depending on the solar zenith angle. In this study, we use semi-empirical BRDF model to simulate the surface reflectance by using 16 day composite cloudy free image. When estimating the simulated surface reflectance, same geometry for GOCI observation was applied. The simulated surface reflectance is used to discriminate cloud areas especially for the thin cloud and shows more reasonable result than original threshold methods.

Cloud Offload in Hostile Environments

DTIC Science & Technology

2011-12-01

of recognized objects in an input image. FACE: Windows XP C++ application based on the OpenCV library [45]. It returns the coordinates and identities...SOLDIER. Energy-Efficient Technolo- gies for the Dismounted Soldier”. National Research Council, 1997. [16] COMMITTEE ON SOLDIER POWER/ENERGY SYSTEMS...vol. 4658 of Lecture Notes in Computer Science. Springer Berlin / Heidelberg, 2007. [45] OPENCV . OpenCV Wiki. http://opencv.willowgarage.com/wiki/. [46

Dynamics of Clouds and Mesoscale Circulations over the Maritime Continent

NASA Astrophysics Data System (ADS)

Jin, Y.; Wang, S.; Xian, P.; Reid, J. S.; Nachamkin, J.

2010-12-01

In recent decades Southeast Asia (SEA) has seen rapid economic growth as well as increased biomass burning, resulting in high air pollution levels and reduced air qual-ity. At the same time clouds often prevent accurate air-quality monitoring and analysis using satellite observations. The Seven SouthEast Asian Studies (7SEAS) field campaign currently underway over SEA provides an unprecedented opportunity to study the com-plex interplay between aerosol and clouds. 7SEAS is a comprehensive interdisciplinary atmospheric sciences program through international partnership of NASA, NRL, ONR and seven local institutions including those from Indonesia, Malaysia, the Philippines, Singapore, Taiwan, Thailand, and Vietnam. While the original goal of 7SEAS is to iso-late the impacts of aerosol particles on weather and the environment, it is recognized that better understanding of SEA meteorological conditions, especially those associated with cloud formation and evolution, is critical to the success of the campaign. In this study we attempt to gain more insight into the dynamic and physical processes associated with low level clouds and atmospheric circulation at the regional scale over SEA, using the Navy’s Coupled Ocean/Atmosphere Mesoscale Prediction System (COAMPS® ), a regional forecast model in operation at FNMOC since 1998. This effort comprises two main components. First, multiple-years of COAMPS operational forecasts over SEA are analyzed for basic climatology of atmospheric fea-tures. Second, mesoscale circulation and cloud properties are simulated at relatively higher resolution (15-km) for selected periods in the Gulf of Tonkin and adjacent coastal areas. Simulation results are compared to MODIS cloud observations and local sound-ings obtained during 7SEAS for model verifications. Atmospheric boundary layer proc-esses are examined in relation to spatial and temporal variations of cloud fields. The cur-rent work serves as an important step toward improving our understanding of the effects of aerosol particles on maritime clouds. The detailed analysis will be presented at the conference.

Large-scale virtual screening on public cloud resources with Apache Spark.

PubMed

Capuccini, Marco; Ahmed, Laeeq; Schaal, Wesley; Laure, Erwin; Spjuth, Ola

2017-01-01

Structure-based virtual screening is an in-silico method to screen a target receptor against a virtual molecular library. Applying docking-based screening to large molecular libraries can be computationally expensive, however it constitutes a trivially parallelizable task. Most of the available parallel implementations are based on message passing interface, relying on low failure rate hardware and fast network connection. Google's MapReduce revolutionized large-scale analysis, enabling the processing of massive datasets on commodity hardware and cloud resources, providing transparent scalability and fault tolerance at the software level. Open source implementations of MapReduce include Apache Hadoop and the more recent Apache Spark. We developed a method to run existing docking-based screening software on distributed cloud resources, utilizing the MapReduce approach. We benchmarked our method, which is implemented in Apache Spark, docking a publicly available target receptor against [Formula: see text]2.2 M compounds. The performance experiments show a good parallel efficiency (87%) when running in a public cloud environment. Our method enables parallel Structure-based virtual screening on public cloud resources or commodity computer clusters. The degree of scalability that we achieve allows for trying out our method on relatively small libraries first and then to scale to larger libraries. Our implementation is named Spark-VS and it is freely available as open source from GitHub (https://github.com/mcapuccini/spark-vs).Graphical abstract.

Assessing the Use of Tactical Clouds to Enhance Warfighter Effectiveness

DTIC Science & Technology

2014-04-01

operating while compromised environment” (attackers with access to communications network); Big Data – Since 9/11 the amount of surveillance data ...unanalyzed. The big data problem is unlikely to improve as it is projected that sensor data volume could potentially be measured in yottabytes (1024...www.forbes.com/sites/techonomy/2012/03/12/military-intelligence-redefined- big - data -in-the- battlefield/ 5 Data Analysis Challenges [Reference 5] DRDC-RDDC

Chemical evolution of the gas in C-type shocks in dark clouds

NASA Astrophysics Data System (ADS)

Nesterenok, A. V.

2018-07-01

A magnetohydrodynamic model of a steady, transverse C-type shock in a dense molecular cloud is presented. A complete gas-grain chemical network is taken into account: the gas-phase chemistry, the adsorption of gas species on dust grains, various desorption mechanisms, the grain surface chemistry, the ion neutralization on dust grains, the sputtering of grain mantles. The population densities of energy levels of ions CI, CII and OI and molecules H2, CO, H2O are computed in parallel with the dynamical and chemical rate equations. The large velocity gradient approximation is used in the line radiative transfer calculations. The simulations consist of two steps: (i) modelling of the chemical and thermal evolution of a static molecular cloud and (ii) shock simulations. A comparison is made with the results of publicly available models of similar physical systems. The focus of the paper is on the chemical processing of gas material and ice mantles of dust grains by the shock. Sputtering of ice mantles takes place in the shock region close to the temperature peak of the neutral gas. At high shock speeds, molecules ejected from ice mantles are effectively destroyed in hot gas, and their survival time is low—of the order of dozens of years. After a passage of high-speed C-type shock, a zone of high abundance of atomic hydrogen appears in the cooling postshock gas that triggers formation of complex organic species such as methanol. It is shown that abundances of some complex organic molecules (COMs) in the postshock region can be much higher than in the preshock gas. These results are important for interpretation of observations of COMs in protostellar outflows.

BioBlend: automating pipeline analyses within Galaxy and CloudMan.

PubMed

Sloggett, Clare; Goonasekera, Nuwan; Afgan, Enis

2013-07-01

We present BioBlend, a unified API in a high-level language (python) that wraps the functionality of Galaxy and CloudMan APIs. BioBlend makes it easy for bioinformaticians to automate end-to-end large data analysis, from scratch, in a way that is highly accessible to collaborators, by allowing them to both provide the required infrastructure and automate complex analyses over large datasets within the familiar Galaxy environment. http://bioblend.readthedocs.org/. Automated installation of BioBlend is available via PyPI (e.g. pip install bioblend). Alternatively, the source code is available from the GitHub repository (https://github.com/afgane/bioblend) under the MIT open source license. The library has been tested and is working on Linux, Macintosh and Windows-based systems.

NGScloud: RNA-seq analysis of non-model species using cloud computing.

PubMed

Mora-Márquez, Fernando; Vázquez-Poletti, José Luis; López de Heredia, Unai

2018-05-03

RNA-seq analysis usually requires large computing infrastructures. NGScloud is a bioinformatic system developed to analyze RNA-seq data using the cloud computing services of Amazon that permit the access to ad hoc computing infrastructure scaled according to the complexity of the experiment, so its costs and times can be optimized. The application provides a user-friendly front-end to operate Amazon's hardware resources, and to control a workflow of RNA-seq analysis oriented to non-model species, incorporating the cluster concept, which allows parallel runs of common RNA-seq analysis programs in several virtual machines for faster analysis. NGScloud is freely available at https://github.com/GGFHF/NGScloud/. A manual detailing installation and how-to-use instructions is available with the distribution. unai.lopezdeheredia@upm.es.

Aether: leveraging linear programming for optimal cloud computing in genomics.

PubMed

Luber, Jacob M; Tierney, Braden T; Cofer, Evan M; Patel, Chirag J; Kostic, Aleksandar D

2018-05-01

Across biology, we are seeing rapid developments in scale of data production without a corresponding increase in data analysis capabilities. Here, we present Aether (http://aether.kosticlab.org), an intuitive, easy-to-use, cost-effective and scalable framework that uses linear programming to optimally bid on and deploy combinations of underutilized cloud computing resources. Our approach simultaneously minimizes the cost of data analysis and provides an easy transition from users' existing HPC pipelines. Data utilized are available at https://pubs.broadinstitute.org/diabimmune and with EBI SRA accession ERP005989. Source code is available at (https://github.com/kosticlab/aether). Examples, documentation and a tutorial are available at http://aether.kosticlab.org. chirag_patel@hms.harvard.edu or aleksandar.kostic@joslin.harvard.edu. Supplementary data are available at Bioinformatics online.

Insights into gait disorders: walking variability using phase plot analysis, Parkinson's disease.

PubMed

Esser, Patrick; Dawes, Helen; Collett, Johnny; Howells, Ken

2013-09-01

Gait variability may have greater utility than spatio-temporal parameters and can, be an indication for risk of falling in people with Parkinson's disease (PD). Current methods rely on prolonged data collection in order to obtain large datasets which may be demanding to obtain. We set out to explore a phase plot variability analysis to differentiate typically developed adults (TDAs) from PD obtained from two 10 m walks. Fourteen people with PD and good mobility (Rivermead Mobility Index≥8) and ten aged matched TDA were recruited and walked over 10-m at self-selected walking speed. An inertial measurement unit was placed over the projected centre of mass (CoM) sampling at 100 Hz. Vertical CoM excursion was derived to determine modelled spatiotemporal data after which the phase plot analysis was applied producing a cloud of datapoints. SDA described the spread and SDB the width of the cloud with β the angular vector of the data points. The ratio (∀) was defined as SDA: SDB. Cadence (p=.342) and stride length (p=.615) did not show a significance between TDA and PD. A difference was found for walking speed (p=.041). Furthermore a significant difference was found for β (p=.010), SDA (p=.004) other than SDB (p=.385) or ratio ∀ (p=.830). Two sequential 10-m walks showed no difference in PD for cadence (p=.193), stride length (p=.683), walking speed (p=.684) and β (p=.194), SDA (p=.051), SDB (p=.145) or ∀ (p=.226). The proposed phase plot analysis, performed on CoM motion could be used to reliably differentiate PD from TDA over a 10-m walk. Copyright © 2013 Elsevier B.V. All rights reserved.

Model My Watershed and BiG CZ Data Portal: Interactive geospatial analysis and hydrological modeling web applications that leverage the Amazon cloud for scientists, resource managers and students

NASA Astrophysics Data System (ADS)

Aufdenkampe, A. K.; Mayorga, E.; Tarboton, D. G.; Sazib, N. S.; Horsburgh, J. S.; Cheetham, R.

2016-12-01

The Model My Watershed Web app (http://wikiwatershed.org/model/) was designed to enable citizens, conservation practitioners, municipal decision-makers, educators, and students to interactively select any area of interest anywhere in the continental USA to: (1) analyze real land use and soil data for that area; (2) model stormwater runoff and water-quality outcomes; and (3) compare how different conservation or development scenarios could modify runoff and water quality. The BiG CZ Data Portal is a web application for scientists for intuitive, high-performance map-based discovery, visualization, access and publication of diverse earth and environmental science data via a map-based interface that simultaneously performs geospatial analysis of selected GIS and satellite raster data for a selected area of interest. The two web applications share a common codebase (https://github.com/WikiWatershed and https://github.com/big-cz), high performance geospatial analysis engine (http://geotrellis.io/ and https://github.com/geotrellis) and deployment on the Amazon Web Services (AWS) cloud cyberinfrastructure. Users can use "on-the-fly" rapid watershed delineation over the national elevation model to select their watershed or catchment of interest. The two web applications also share the goal of enabling the scientists, resource managers and students alike to share data, analyses and model results. We will present these functioning web applications and their potential to substantially lower the bar for studying and understanding our water resources. We will also present work in progress, including a prototype system for enabling citizen-scientists to register open-source sensor stations (http://envirodiy.org/mayfly/) to stream data into these systems, so that they can be reshared using Water One Flow web services.

The analysis to understand temporal variation and long-range transport of aerosol over Northeast-Asia Using COMS, MI

NASA Astrophysics Data System (ADS)

KIM, M.; Kim, J.

2016-12-01

Numerous efforts to retrieve aerosol optical properties (AOPs) using satellite measurements have been accumulated for decades, resulted in several qualified data which can be used for the analysis of spatiotemporal characteristics of AOPs. However, the limitation in the instrument lifetime restricts temporal window of the analysis of long-term AOPs variation. In this point of view, single channel algorithm, which uses a single visible channel to retrieve aerosol optical depth (AOD), has an advantage to extent the time domain of the analysis. The Korean geostationary earth orbit (GEO) satellite, the Communication, Ocean and Meteorological Satellite (COMS) includes the single channel Meteorological Imager (MI), which can also be utilized for the retrieval of AOPs. Since the GEO satellite measurement has an advantage for continuous monitoring of AOPs over Northeast Asia, we can analyze the spatiotemporal characteristic of the aerosol using MI observations. In this study, we investigate the trend of AOD and also discuss the impact of long-range transport of aerosol on the temporal variation. Since the year 2010 when the COMS was launched, AODs over Northeast China and Yellow Sea region show 3.02 % and 2.74 % decrease per year, respectively, which are significant trends in spite of only 5-year short period. The decreasing behavior seems associated with the recent decreasing frequency of dust event over the region. But other Northeast Asia regions do not show clear temporal change. The accuracy of retrieved AOD can relates to the uncertainty of this trend analysis. According to the error analysis, cloud contamination and error in bright surface reflectance results in the accuracy of AOD. Therefore, improvements of cloud masking process and surface reflectance estimation in the developed single channel MI algorithm will be required for the future study.

SparkSeq: fast, scalable and cloud-ready tool for the interactive genomic data analysis with nucleotide precision.

PubMed

Wiewiórka, Marek S; Messina, Antonio; Pacholewska, Alicja; Maffioletti, Sergio; Gawrysiak, Piotr; Okoniewski, Michał J

2014-09-15

Many time-consuming analyses of next -: generation sequencing data can be addressed with modern cloud computing. The Apache Hadoop-based solutions have become popular in genomics BECAUSE OF: their scalability in a cloud infrastructure. So far, most of these tools have been used for batch data processing rather than interactive data querying. The SparkSeq software has been created to take advantage of a new MapReduce framework, Apache Spark, for next-generation sequencing data. SparkSeq is a general-purpose, flexible and easily extendable library for genomic cloud computing. It can be used to build genomic analysis pipelines in Scala and run them in an interactive way. SparkSeq opens up the possibility of customized ad hoc secondary analyses and iterative machine learning algorithms. This article demonstrates its scalability and overall fast performance by running the analyses of sequencing datasets. Tests of SparkSeq also prove that the use of cache and HDFS block size can be tuned for the optimal performance on multiple worker nodes. Available under open source Apache 2.0 license: https://bitbucket.org/mwiewiorka/sparkseq/. © The Author 2014. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

[Radiologic picture of maxillary sinus aspergilloma].

PubMed

Kaczmarek, I; Bilska, J; Osmola, K; Nowaczyk, M T

2010-06-01

Mycotic infection of paranasal sinus could be the etiological factor of chronic sinusitis. The increase in number of fungal sinusitis cases have been reported recently among nonimmunocompromised patient after endodontic treatment of maxillary teeth. Nonspecific clinical signs and incorrect radiologic pictures interpretation as well as loss of therapeutic standards seems to be the cause of false negative diagnosis and difficulties in treatment of fungal sinusitis. Clinical and radiological picture of maxillary sinus aspergillosis was described in this paper. In the period of 2006-2009 in the Department of Maxillo-Facial Surgery 19 patient with fungal maxillary sinusitis was treated. The endodontic treatment of maxillary teeth of the related side was performed previously in 80% examined cases. In 2 cases there were immunocompromised patients with immunosuppressive treatment. In 16 cases patients were referred to our Department due to metallic foreign body of the maxillary sinus. Routine diagnostic radiological imaging was performed in each case: paranasal sinus view--Water's view and panoramic radiograph (orthopantomograph). In 4 cases imaging was extended with computer tomography (CT) visualization. The surgical treatment was performed in each case. The final diagnosis was puted on histopathological examination and fungal culture. In 16 cases of analysed group histopathological examination and fungal culture revealed aspergilosis. In 2 cases fungal culture was negative, but histopathology slices confirm presence of hyphae of Aspergillus. In 1 case the root canal sealer was found in the maxillary sinus. In none case invasive form of aspergillosis was confirmed. In all cases Water's view of paranasal sinuses and ortopantomograph showed partially or totally clouded sinus with well-defined, single or multifocal radiopaque object similar to metallic foreign body. Characteristic finding in CT imaging was well-defined radiodence concretions that have been attributed to calcium deposits in inflammatory changed mucosa, that might suggest "foreign body" picture. In 1 to 3 years follow-up control there was a recurrence of symptoms in one case. Foreign body of maxillary sinus have to be differentiated with aspergilosis. Metallic "foreign body" view in maxillary sinus seems to be characteristic sign of aspergillosis. The most often form of maxillary sinus aspergilosis is aspergilloma.

Efficient Server-Aided Secure Two-Party Function Evaluation with Applications to Genomic Computation

DTIC Science & Technology

2016-07-14

of the important properties of secure computation . In particular, it is known that full fairness cannot be achieved in the case of two-party com...Jakobsen, J. Nielsen, and C. Orlandi. A framework for outsourcing of secure computation . In ACM Workshop on Cloud Computing Security (CCSW), pages...Function Evaluation with Applications to Genomic Computation Abstract: Computation based on genomic data is becoming increasingly popular today, be it

Hubble Snaps Sharp Image Of Cosmic Concoction

NASA Image and Video Library

2017-12-08

NASA image release July 13, 2010 To view a video of this image go to: www.flickr.com/photos/gsfc/4790394066/ and here: www.flickr.com/photos/gsfc/4789786191/ A colourful star-forming region is featured in this stunning new NASA/ESA Hubble Space Telescope image of NGC 2467. Looking like a roiling cauldron of some exotic cosmic brew, huge clouds of gas and dust are sprinkled with bright blue hot young stars. Strangely shaped dust clouds, resembling spilled liquids, are silhouetted against a colourful background of glowing gas in this newly released Hubble image. The star-forming region NGC 2467 is a vast cloud of gas – mostly hydrogen – that serves as an incubator for new stars. Some of these youthful stars have emerged from the dense clouds where they were born and now shine brightly, hot and blue in this picture, but many others remain hidden. The full beauty of this object and hints of the astrophysical processes at work within it are revealed in this super-sharp image from Hubble. Hot young stars that recently formed from the cloud are emitting fierce ultraviolet radiation that is causing the whole scene to glow while also sculpting the environment and gradually eroding the gas clouds. Studies have shown that most of the radiation comes from the single hot and brilliant massive star just above the centre of the image. Its fierce radiation has cleared the surrounding region and some of the next generation of stars are forming in the denser regions around the edge. One of the most familiar star-forming regions is the Orion Nebula, which can be seen with the naked eye. NGC 2467 is a similar but more distant example. Such stellar nurseries can be seen out to considerable distances in the Universe, and their study is important in determining the distance and chemical composition of other galaxies. Some galaxies contain huge star-forming regions, which may contain tens of thousands of stars. Another dramatic example is the 30 Doradus region in the Large Magellanic Cloud. NGC 2467 was discovered in the nineteenth century and lies in the southern constellation of Puppis, which represents the poop deck of Jason's fabled ship Argo from Greek mythology. NGC 2467 is thought to lie about 13 000 light-years from Earth. The picture was created from images taken with the Wide Field Channel of the Advanced Camera for Surveys through three different filters (F550M, F660N and F658N, shown in blue, green and red respectively). These data were taken in 2004. The Hubble Space Telescope is a project of international cooperation between ESA and NASA. Credit: NASA, ESA and Orsola De Marco (Macquarie University) NASA Goddard Space Flight Center is home to the nation's largest organization of combined scientists, engineers and technologists that build spacecraft, instruments and new technology to study the Earth, the sun, our solar system, and the universe.

Aether: leveraging linear programming for optimal cloud computing in genomics

PubMed Central

Luber, Jacob M; Tierney, Braden T; Cofer, Evan M; Patel, Chirag J

2018-01-01

Abstract Motivation Across biology, we are seeing rapid developments in scale of data production without a corresponding increase in data analysis capabilities. Results Here, we present Aether (http://aether.kosticlab.org), an intuitive, easy-to-use, cost-effective and scalable framework that uses linear programming to optimally bid on and deploy combinations of underutilized cloud computing resources. Our approach simultaneously minimizes the cost of data analysis and provides an easy transition from users’ existing HPC pipelines. Availability and implementation Data utilized are available at https://pubs.broadinstitute.org/diabimmune and with EBI SRA accession ERP005989. Source code is available at (https://github.com/kosticlab/aether). Examples, documentation and a tutorial are available at http://aether.kosticlab.org. Contact chirag_patel@hms.harvard.edu or aleksandar.kostic@joslin.harvard.edu Supplementary information Supplementary data are available at Bioinformatics online. PMID:29228186

Joint Sensor: Security Test and Evaluation Embedded in a Production Network Sensor Cloud

DTIC Science & Technology

2010-12-01

read of this year’s Verizon 2010 Data Breach Investigations Report (Baker et al. 2010) may in a sense reiterate the assumptions and propagate the...in 2002. He currently serves as the program manager for the DREN. E-mail: rcampbell@hpcmo.hpc.mil References Baker, W., et al. 2010. 2010 data breach investiga...tions report. http://www.verizonbusiness.com/resources/ reports/rp_2010- data - breach -report_en_xg.pdf (ac- cessed October 13, 2010

Word Frequency Analysis. MOS: 51N. Skill Levels 1 & 2.

DTIC Science & Technology

1981-05-01

C.s~ss t C: 4i,40 16 CoD.J,1U 4 I CE s!Z 26 rCLL 9 CELL ! I CEAENf. 24 CFNT;R 3 C.J7’.1-T-CENTEft 2 CtNT?-AEr’ 4 Mf~ :aL.ZWE 2 e VrAL C ^’f4 t...GOJ4LTy214I7G 27~~~Z r.4MrL2 JN 7fE43ING 26 PUT?e- CELL 26 4126 pPZPING 2 ~76 Pr, ’S U~R 26S*5INh2 P8!P(NTq25 P-.crsS 25 P.AT8 25 INCI 25 PTSVRE 15 u 5...rL 2 CPAL 11𔃻? .1 ’G 2 C IrIL2:", I DE I L 2 CIRZCJLL-, 2 CIE!Nv, 2 C~LrFCJLC LJD 2 CUA*.Ll 2 ccCoVM4UICATION 2 CELL ; A S 2 :(LLZkS 2 CO4 It~TIOE

CLouds, and Aerosols Radiative Impacts and Forcing: Year 2016 (CLARIFY-2016)

NASA Astrophysics Data System (ADS)

Haywood, J. M.; Bellouin, N.; Carslaw, K. S.; Coe, H.; Field, P.; Highwood, E. J.; Redemann, J.; Stier, P.; Wood, R.; Zuidema, P.

2013-12-01

Strongly absorbing biomass burning aerosols (BBAs) exist above highly reflectant stratocumulus clouds in the SE Atlantic with implications on the direct (e.g. Haywood et al., 2003), semi-direct (e.g. Johnson et al., 2006), and indirect effect of aerosols, implications on the remote sensing of cloud optical properties, development of clouds and feedback processes. Here, we present an analysis of modelled estimates of the direct effect using twelve models from the AEROCOM project (Myhre et al., 2013) to show that estimates of the direct effect in SE Atlantic range from strongly negative to strongly positive. Furthermore, we evaluate the performance of the HadGEM2 model and show it cannot replicate the extreme values of positive forcing inferred from high spectral resolution satellite retrievals. By examining patterns of deposition, we infer that the indirect effect from biomass burning aerosols is very limited in the model, but without detailed measurements we are unsure of the validity of this inference. We conclude that the SE Atlantic is therefore of key importance in determining the radiative forcing of biomass burning aerosols and provides a very stringent test for global climate models as they need to accurately represent the geographic distribution of the aerosol optical depth, the wavelength dependent aerosol single scattering albedo, the vertical profile of the aerosol, the geographic distribution of the cloud, the cloud fraction, the cloud liquid water content, the cloud droplet effective radii, and the vertical profile of the cloud. These results are used as scientific rationale to justify a new measurement campaign: CLouds and Aerosol Radiative Impacts and Forcing: Year-2016 (CLARIFY-2016). Haywood, J.M., Osborne, S.R. Francis, P.N., Keil, A., Formenti, P., Andreae, M.O., and Kaye, P.H., The mean physical and optical properties of regional haze dominated by biomass burning aerosol measured from the C-130 aircraft during SAFARI 2000, J. Geophys. Res., 108(D13), 8473, doi:10.1029/2002JD002226, 2003. Johnson, B.T., K.P. Shine, and P.M. Forster, The semi-direct aerosol effect: Impact of absorbing aerosols on marine stratocumulus, QJRMS, DOI: 10.1256/qj.03.61, 2006. Myhre, G. et al. Radiative forcing of the direct aerosol effect from AeroCom Phase II simulations, Atmos. Chem. Phys., 13, 1853-1877, doi:10.5194/acp-13-1853-2013, 2013

Cloud properties and bulk microphysical properties of semi-transparent cirrus from IR Sounders

NASA Astrophysics Data System (ADS)

Stubenrauch, Claudia; Feofilov, Artem; Armante, Raymond; Guignard, Anthony

2013-04-01

Satellite observations provide a continuous survey of the atmosphere over the whole globe. IR sounders have been observing our planet since 1979. The spectral resolution has improved from TIROS-N Operational Vertical Sounders (TOVS) to the Atmospheric InfraRed Sounder (AIRS), and to the InfraRed Atmospheric Sounding Interferometer (IASI); resolution within the CO2 absorption band makes these passive sounders most sensitive to semi-transparent cirrus (about 30% of all clouds), day and night. The LMD cloud property retrieval method developed for TOVS, has been adapted to the second generation of IR sounders like AIRS and, recently, IASI. It is based on a weighted χ2 method using different channels within the 15 micron CO2 absorption band. Once the cloud physical properties (cloud pressure and IR emissivity) are retrieved, cirrus bulk microphysical properties (De and IWP) are determined from spectral emissivity differences between 8 and 12 μm. The emissivities are determined using the retrieved cloud pressure and are then compared to those simulated by the radiative transfer model. For IASI, we use the latest version of the radiative transfer model 4A (http://4aop.noveltis.com), which has been coupled with the DISORT algorithm to take into account multiple scattering of ice crystals. The code incorporates single scattering properties of column-like or aggregate-like ice crystals provided by MetOffice (Baran et al. (2001); Baran and Francis (2004)). The synergy of AIRS and two active instruments of the A-Train (lidar and radar of the CALIPSO and CloudSat missions), which provide accurate information on vertical cloud structure, allowed the evaluation of cloud properties retrieved by the weighted χ2 method. We present first results for cloud properties obtained with IASI/ Metop-A and compare them with those of AIRS and other cloud climatologies having participated in the GEWEX cloud assessment. The combination of IASI observations at 9:30 AM and 9:30 PM complement the AIRS observations at 1:30 AM and 1:30 PM local time, giving information on the diurnal cycle of clouds. References: Baran, A.J. and Francis, P.N. and Havemann, S. and Yang, P: A study of the absorption and extinction properties of hexagonal ice columns and plates in random and preferred orientation, using exact T-matrix theory and aircraft observations of cirrus, J. Quant. Spectrosc. Ra., 70, 505-518, 2001 Baran, A. J. and Francis, P. N.: On the radiative properties of cirrus cloud at solar and thermal wavelengths:A test of model consistency using high-resolution airborne radiance measurements, Q. J. Roy. Meteor. Soc.,130, 763-778, 2004.

Xyce Parallel Electronic Simulator Users' Guide Version 6.7.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Keiter, Eric R.; Aadithya, Karthik Venkatraman; Mei, Ting

This manual describes the use of the Xyce Parallel Electronic Simulator. Xyce has been designed as a SPICE-compatible, high-performance analog circuit simulator, and has been written to support the simulation needs of the Sandia National Laboratories electrical designers. This development has focused on improving capability over the current state-of-the-art in the following areas: Capability to solve extremely large circuit problems by supporting large-scale parallel com- puting platforms (up to thousands of processors). This includes support for most popular parallel and serial computers. A differential-algebraic-equation (DAE) formulation, which better isolates the device model package from solver algorithms. This allows one tomore » develop new types of analysis without requiring the implementation of analysis-specific device models. Device models that are specifically tailored to meet Sandia's needs, including some radiation- aware devices (for Sandia users only). Object-oriented code design and implementation using modern coding practices. Xyce is a parallel code in the most general sense of the phrase -- a message passing parallel implementation -- which allows it to run efficiently a wide range of computing platforms. These include serial, shared-memory and distributed-memory parallel platforms. Attention has been paid to the specific nature of circuit-simulation problems to ensure that optimal parallel efficiency is achieved as the number of processors grows. The information herein is subject to change without notice. Copyright c 2002-2017 Sandia Corporation. All rights reserved. Trademarks Xyce TM Electronic Simulator and Xyce TM are trademarks of Sandia Corporation. Orcad, Orcad Capture, PSpice and Probe are registered trademarks of Cadence Design Systems, Inc. Microsoft, Windows and Windows 7 are registered trademarks of Microsoft Corporation. Medici, DaVinci and Taurus are registered trademarks of Synopsys Corporation. Amtec and TecPlot are trademarks of Amtec Engineering, Inc. All other trademarks are property of their respective owners. Contacts World Wide Web http://xyce.sandia.gov https://info.sandia.gov/xyce (Sandia only) Email xyce@sandia.gov (outside Sandia) xyce-sandia@sandia.gov (Sandia only) Bug Reports (Sandia only) http://joseki-vm.sandia.gov/bugzilla http://morannon.sandia.gov/bugzilla« less

Law Enforcement’s Dilemma: Fighting 21st Century Encrypted Communications with 20th Century Legislation

DTIC Science & Technology

2018-03-01

Update. 187 Rishi Iyengar, “Apple Is Removing VPN Apps that Allow Users to Skirt China’s Great Firewall,” CNN Money , July 29, 2017, http...On iCloud,” CNN Money , February 22, 2016, http://money.cnn.com/2016/02/22/technology/apple-privacy-icloud/index.html. 213 District Attorney, New...it now stands, targets of investigation can communicate surreptitiously on various platforms free from detection.236 James Comey, the former

Open-cell and closed-cell clouds off Peru [detail

NASA Image and Video Library

2017-12-08

2010/107 - 04/17 at 21 :05 UTC. Open-cell and closed-cell clouds off Peru, Pacific Ocean. To view the full fame of this image to go: www.flickr.com/photos/gsfc/4557497219/ Resembling a frosted window on a cold winter's day, this lacy pattern of marine clouds was captured off the coast of Peru in the Pacific Ocean by the MODIS on the Aqua satellite on April 19, 2010. The image reveals both open- and closed-cell cumulus cloud patterns. These cells, or parcels of air, often occur in roughly hexagonal arrays in a layer of fluid (the atmosphere often behaves like a fluid) that begins to "boil," or convect, due to heating at the base or cooling at the top of the layer. In "closed" cells warm air is rising in the center, and sinking around the edges, so clouds appear in cell centers, but evaporate around cell edges. This produces cloud formations like those that dominate the lower left. The reverse flow can also occur: air can sink in the center of the cell and rise at the edge. This process is called "open cell" convection, and clouds form at cell edges around open centers, which creates a lacy, hollow-looking pattern like the clouds in the upper right. Closed and open cell convection represent two stable atmospheric configurations — two sides of the convection coin. But what determines which path the "boiling" atmosphere will take? Apparently the process is highly chaotic, and there appears to be no way to predict whether convection will result in open or closed cells. Indeed, the atmosphere may sometimes flip between one mode and another in no predictable pattern. Satellite: Aqua NASA/GSFC/Jeff Schmaltz/MODIS Land Rapid Response Team To learn more about MODIS go to: rapidfire.sci.gsfc.nasa.gov/gallery/?latest NASA Goddard Space Flight Center is home to the nation's largest organization of combined scientists, engineers and technologists that build spacecraft, instruments and new technology to study the Earth, the sun, our solar system, and the universe.

Cloud-based interactive analytics for terabytes of genomic variants data.

PubMed

Pan, Cuiping; McInnes, Gregory; Deflaux, Nicole; Snyder, Michael; Bingham, Jonathan; Datta, Somalee; Tsao, Philip S

2017-12-01

Large scale genomic sequencing is now widely used to decipher questions in diverse realms such as biological function, human diseases, evolution, ecosystems, and agriculture. With the quantity and diversity these data harbor, a robust and scalable data handling and analysis solution is desired. We present interactive analytics using a cloud-based columnar database built on Dremel to perform information compression, comprehensive quality controls, and biological information retrieval in large volumes of genomic data. We demonstrate such Big Data computing paradigms can provide orders of magnitude faster turnaround for common genomic analyses, transforming long-running batch jobs submitted via a Linux shell into questions that can be asked from a web browser in seconds. Using this method, we assessed a study population of 475 deeply sequenced human genomes for genomic call rate, genotype and allele frequency distribution, variant density across the genome, and pharmacogenomic information. Our analysis framework is implemented in Google Cloud Platform and BigQuery. Codes are available at https://github.com/StanfordBioinformatics/mvp_aaa_codelabs. cuiping@stanford.edu or ptsao@stanford.edu. Supplementary data are available at Bioinformatics online. Published by Oxford University Press 2017. This work is written by US Government employees and are in the public domain in the US.

Cloud-based interactive analytics for terabytes of genomic variants data

PubMed Central

Pan, Cuiping; McInnes, Gregory; Deflaux, Nicole; Snyder, Michael; Bingham, Jonathan; Datta, Somalee; Tsao, Philip S

2017-01-01

Abstract Motivation Large scale genomic sequencing is now widely used to decipher questions in diverse realms such as biological function, human diseases, evolution, ecosystems, and agriculture. With the quantity and diversity these data harbor, a robust and scalable data handling and analysis solution is desired. Results We present interactive analytics using a cloud-based columnar database built on Dremel to perform information compression, comprehensive quality controls, and biological information retrieval in large volumes of genomic data. We demonstrate such Big Data computing paradigms can provide orders of magnitude faster turnaround for common genomic analyses, transforming long-running batch jobs submitted via a Linux shell into questions that can be asked from a web browser in seconds. Using this method, we assessed a study population of 475 deeply sequenced human genomes for genomic call rate, genotype and allele frequency distribution, variant density across the genome, and pharmacogenomic information. Availability and implementation Our analysis framework is implemented in Google Cloud Platform and BigQuery. Codes are available at https://github.com/StanfordBioinformatics/mvp_aaa_codelabs. Contact cuiping@stanford.edu or ptsao@stanford.edu Supplementary information Supplementary data are available at Bioinformatics online. PMID:28961771

The Mpi-M Aerosol Climatology (MAC)

NASA Astrophysics Data System (ADS)

Kinne, S.

2014-12-01

Monthly gridded global data-sets for aerosol optical properties (AOD, SSA and g) and for aerosol microphysical properties (CCN and IN) offer a (less complex) alternate path to include aerosol radiative effects and aerosol impacts on cloud-microphysics in global simulations. Based on merging AERONET sun-/sky-photometer data onto background maps provided by AeroCom phase 1 modeling output and AERONET sun-/the MPI-M Aerosol Climatology (MAC) version 1 was developed and applied in IPCC simulations with ECHAM and as ancillary data-set in satellite-based global data-sets. An updated version 2 of this climatology will be presented now applying central values from the more recent AeroCom phase 2 modeling and utilizing the better global coverage of trusted sun-photometer data - including statistics from the Marine Aerosol network (MAN). Applications include spatial distributions of estimates for aerosol direct and aerosol indirect radiative effects.

[Dietopro.com: a new tool for dietotherapeutical management based on cloud computing technology].

PubMed

García, Candido Gabriel; Sebastià, Natividad; Blasco, Esther; Soriano, José Miguel

2014-09-01

dietotherapeutical softwares are now a basic tool in the dietary management of patients, either from a physiological point of view and / or pathological. New technologies and research in this regard, have favored the emergence of new applications for the dietary and nutritional management that facilitate the management of the dietotherapeutical company. To comparatively study the main dietotherapeutical applications on the market to give criteria to the professional users of diet and nutrition in the selection of one of the main tools for these. Dietopro.com is, from our point of view, one of the most comprehensive management of patients dietotherapeutical applications. Based on the need of the user, it has different dietary sofwares choice.We conclude that there is no better or worse than another application, but applications roughly adapted to the needs of professionals. Copyright AULA MEDICA EDICIONES 2014. Published by AULA MEDICA. All rights reserved.

Influence of Pleistocene glacial/interglacial cycles on the genetic structure of the mistletoe cactus Rhipsalis baccifera (Cactaceae) in Mesoamerica.

PubMed

Ornelas, Juan Francisco; Rodríguez-Gómez, Flor

2015-01-01

Phylogeographical work on cloud forest-adapted species provides inconsistent evidence on cloud forest dynamics during glacial cycles. A study of Rhipsalis baccifera (Cactaceae), a bird-dispersed epiphytic mistletoe cactus, was conducted to investigate genetic variation at sequence data from nuclear [internal transcribed spacer (ITS), 677 bp] and chloroplast (rpl32-trnL, 1092bp) DNA for 154 individuals across the species range in Mesoamerica to determine if such patterns are consistent with the expansion/contraction model of cloud forest during glacial cycles. We conducted population and spatial genetic analyses as well as gene flow and divergence time estimates between 24 populations comprising the distribution of R. baccifera in Mexico and Guatemala to gain insight of the evolutionary history of these populations, and a complementary species distribution modeling approach to frame information derived from the genetic analyses into an explicit paleoecological context. The results revealed a phylogeographical break at the Isthmus of Tehuantepec, and high levels of genetic diversity among populations and cloud forest areas. Despite the genetic differentiation of some R. baccifera populations, the widespread ITS ribotypes suggest effective nuclear gene flow via pollen and population differentiation shown by the rpl32-trnL suggests more restricted seed flow. Predictions of species distribution models under past last glacial maximum (LGM) climatic conditions and a significant signal of demographic expansion suggest that R. baccifera populations experienced a range expansion tracking the conditions of the cloud forest distribution and shifted to the lowlands with population connectivity during the LGM. © The American Genetic Association 2015. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Water relations and microclimate around the upper limit of a cloud forest in Maui, Hawai'i.

PubMed

Gotsch, Sybil G; Crausbay, Shelley D; Giambelluca, Thomas W; Weintraub, Alexis E; Longman, Ryan J; Asbjornsen, Heidi; Hotchkiss, Sara C; Dawson, Todd E

2014-07-01

The goal of this study was to determine the effects of atmospheric demand on both plant water relations and daily whole-tree water balance across the upper limit of a cloud forest at the mean base height of the trade wind inversion in the tropical trade wind belt. We measured the microclimate and water relations (sap flow, water potential, stomatal conductance, pressure-volume relations) of Metrosideros polymorpha Gaudich. var. polymorpha in three habitats bracketing the cloud forest's upper limit in Hawai'i to understand the role of water relations in determining ecotone position. The subalpine shrubland site, located 100 m above the cloud forest boundary, had the highest vapor pressure deficit, the least amount of rainfall and the highest levels of nighttime transpiration (EN) of all three sites. In the shrubland site, on average, 29% of daily whole-tree transpiration occurred at night, while on the driest day of the study 50% of total daily transpiration occurred at night. While EN occurred in the cloud forest habitat, the proportion of total daily transpiration that occurred at night was much lower (4%). The average leaf water potential (Ψleaf) was above the water potential at the turgor loss point (ΨTLP) on both sides of the ecotone due to strong stomatal regulation. While stomatal closure maintained a high Ψleaf, the minimum leaf water potential (Ψleafmin) was close to ΨTLP, indicating that drier conditions may cause drought stress in these habitats and may be an important driver of current landscape patterns in stand density. © The Author 2014. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Star-Forming Clouds Feed, Churn, and Fall

NASA Astrophysics Data System (ADS)

Kohler, Susanna

2017-12-01

Molecular clouds, the birthplaces of stars in galaxies throughout the universe, are complicated and dynamic environments. A new series of simulations has explored how these clouds form, grow, and collapse over their lifetimes.This composite image shows part of the Taurus Molecular Cloud. [ESO/APEX (MPIfR/ESO/OSO)/A. Hacar et al./Digitized Sky Survey]Stellar BirthplacesMolecular clouds form out of the matter in between stars, evolving through constant interactions with their turbulent environments. These interactions taking the form of accretion flows and surface forces, while gravity, turbulence, and magnetic fields interplay are thought to drive the properties and evolution of the clouds.Our understanding of the details of this process, however, remains fuzzy. How does mass accretion affect these clouds as they evolve? What happens when nearby supernova explosions blast the outsides of the clouds? What makes the clouds churn, producing the motion within them that prevents them from collapsing? The answers to these questions can tellus about the gas distributed throughout galaxies, revealing information about the environments in which stars form.A still from the simulation results showing the broader population of molecular clouds that formed in the authors simulations, as well as zoom-in panels of three low-mass clouds tracked in high resolution. [Ibez-Meja et al. 2017]Models of TurbulenceIn a new study led by Juan Ibez-Meja (MPI Garching and Universities of Heidelberg and Cologne in Germany, and American Museum of Natural History), scientists have now explored these questions using a series of three-dimensional simulations of a population of molecular clouds forming and evolving in the turbulent interstellar medium.The simulations take into account a whole host of physics, including the effects of nearby supernova explosions, self-gravitation, magnetic fields, diffuse heating, and radiative cooling. After looking at the behavior of the broader population of clouds, the authors zoom in and explore three clouds in high-resolution to learn more about the details.Watching Clouds EvolveIbez-Meja and collaborators find that mass accretion occurring after the molecular clouds form plays an important role in the clouds evolution, increasing the mass available to form stars and carrying kinetic energy into the cloud. The accretion process is driven both by background turbulent flows and gravitational attraction as the cloud draws in the gas in its nearby environment.Plots of the cloud mass and radius (top) and mass accretion rate (bottom) for one of the three zoomed-in clouds, shown as a function of time over the 10-Myr simulation. [Adapted from Ibez-Meja et al. 2017]The simulations show that nearby supernovae have two opposing effects on a cloud. On one hand, the blast waves from supernovae compress the envelope of the cloud, increasing the instantaneous rate of accretion. On the other hand, the blast waves disrupt parts of the envelope and erode mass from the clouds surface, decreasing accretion overall. These events ensure that the mass accretion rate of molecular clouds is non-uniform, regularly punctuated by sporadic increases and decreases as the clouds are battered by nearby explosions.Lastly, Ibez-Meja and collaborators show that mass accretion alone isnt enough to power the turbulent internal motions we observe inside molecular clouds. Instead, they conclude, the cloud motions must be primarily powered by gravitational potential energy being converted into kinetic energy as the cloud contracts.The authors simulations therefore show that molecular clouds exist in a state of precarious balance, prevented from collapsing by internal turbulence driven by interactions with their environment and by their own contraction. These results give us an intriguing glimpse into the complex environments in which stars are born.BonusCheck out the animated figure below, which displays how the clouds in the authors simulations evolve over the span of 10 million years.http://cdn.iopscience.com/images/0004-637X/850/1/62/Full/apjaa93fef1_video.mp4CitationJuan C. Ibez-Meja et al 2017 ApJ 850 62. doi:10.3847/1538-4357/aa93fe

Cloud-based Web Services for Near-Real-Time Web access to NPP Satellite Imagery and other Data

NASA Astrophysics Data System (ADS)

Evans, J. D.; Valente, E. G.

2010-12-01

We are building a scalable, cloud computing-based infrastructure for Web access to near-real-time data products synthesized from the U.S. National Polar-Orbiting Environmental Satellite System (NPOESS) Preparatory Project (NPP) and other geospatial and meteorological data. Given recent and ongoing changes in the the NPP and NPOESS programs (now Joint Polar Satellite System), the need for timely delivery of NPP data is urgent. We propose an alternative to a traditional, centralized ground segment, using distributed Direct Broadcast facilities linked to industry-standard Web services by a streamlined processing chain running in a scalable cloud computing environment. Our processing chain, currently implemented on Amazon.com's Elastic Compute Cloud (EC2), retrieves raw data from NASA's Moderate Resolution Imaging Spectroradiometer (MODIS) and synthesizes data products such as Sea-Surface Temperature, Vegetation Indices, etc. The cloud computing approach lets us grow and shrink computing resources to meet large and rapid fluctuations (twice daily) in both end-user demand and data availability from polar-orbiting sensors. Early prototypes have delivered various data products to end-users with latencies between 6 and 32 minutes. We have begun to replicate machine instances in the cloud, so as to reduce latency and maintain near-real time data access regardless of increased data input rates or user demand -- all at quite moderate monthly costs. Our service-based approach (in which users invoke software processes on a Web-accessible server) facilitates access into datasets of arbitrary size and resolution, and allows users to request and receive tailored and composite (e.g., false-color multiband) products on demand. To facilitate broad impact and adoption of our technology, we have emphasized open, industry-standard software interfaces and open source software. Through our work, we envision the widespread establishment of similar, derived, or interoperable systems for processing and serving near-real-time data from NPP and other sensors. A scalable architecture based on cloud computing ensures cost-effective, real-time processing and delivery of NPP and other data. Access via standard Web services maximizes its interoperability and usefulness.

Coupling West WRF to GSSHA with GSSHApy

NASA Astrophysics Data System (ADS)

Snow, A. D.

2017-12-01

The West WRF output data is in the gridded NetCDF output format containing the required forcing data needed to run a GSSHA simulation. These data include precipitation, pressure, temperature, relative humidity, cloud cover, wind speed, and solar radiation. Tools to reproject, resample, and reformat the data for GSSHA have recently been added to the open source Python library GSSHApy (https://github.com/ci-water/gsshapy). These tools have created a connection that has made it possible to run forecasts using the West WRF forcing data with GSSHA to produce both streamflow and lake level predictions.

Genome assembly from synthetic long read clouds

PubMed Central

Kuleshov, Volodymyr; Snyder, Michael P.; Batzoglou, Serafim

2016-01-01

Motivation: Despite rapid progress in sequencing technology, assembling de novo the genomes of new species as well as reconstructing complex metagenomes remains major technological challenges. New synthetic long read (SLR) technologies promise significant advances towards these goals; however, their applicability is limited by high sequencing requirements and the inability of current assembly paradigms to cope with combinations of short and long reads. Results: Here, we introduce Architect, a new de novo scaffolder aimed at SLR technologies. Unlike previous assembly strategies, Architect does not require a costly subassembly step; instead it assembles genomes directly from the SLR’s underlying short reads, which we refer to as read clouds. This enables a 4- to 20-fold reduction in sequencing requirements and a 5-fold increase in assembly contiguity on both genomic and metagenomic datasets relative to state-of-the-art assembly strategies aimed directly at fully subassembled long reads. Availability and Implementation: Our source code is freely available at https://github.com/kuleshov/architect. Contact: kuleshov@stanford.edu PMID:27307620

Exo-Transmit: An Open-Source Code for Calculating Transmission Spectra for Exoplanet Atmospheres of Varied Composition

NASA Astrophysics Data System (ADS)

Kempton, Eliza M.-R.; Lupu, Roxana; Owusu-Asare, Albert; Slough, Patrick; Cale, Bryson

2017-04-01

We present Exo-Transmit, a software package to calculate exoplanet transmission spectra for planets of varied composition. The code is designed to generate spectra of planets with a wide range of atmospheric composition, temperature, surface gravity, and size, and is therefore applicable to exoplanets ranging in mass and size from hot Jupiters down to rocky super-Earths. Spectra can be generated with or without clouds or hazes with options to (1) include an optically thick cloud deck at a user-specified atmospheric pressure or (2) to augment the nominal Rayleigh scattering by a user-specified factor. The Exo-Transmit code is written in C and is extremely easy to use. Typically the user will only need to edit parameters in a single user input file in order to run the code for a planet of their choosing. Exo-Transmit is available publicly on Github with open-source licensing at https://github.com/elizakempton/Exo_Transmit.

ALMA Observations of the IRDC Clump G34.43+00.24 MM3: Complex Organic and Deuterated Molecules

NASA Astrophysics Data System (ADS)

Sakai, Takeshi; Yanagida, Takahiro; Furuya, Kenji; Aikawa, Yuri; Sanhueza, Patricio; Sakai, Nami; Hirota, Tomoya; Jackson, James M.; Yamamoto, Satoshi

2018-04-01

We have observed complex organic molecules (COMs) and deuterated species toward a hot core/corino (HC) associated with the infrared dark cloud clump G34.43+00.24 MM3 with the Atacama Large Millimeter/submillimeter Array. We have detected six normal-COMs (CH3OH, CH3CHO, CH3CH2CN, CH3OCH3, HCOOCH3, and NH2CHO), one deuterated-COM (CH2DCN), and two deuterated fundamental molecules (D2CO and DNC) toward G34.43+00.24 MM3 HC. None of these lines, except for CH3OH, are detected toward the shocked regions in our data, which suggests that COMs do not originate in shocks. The abundance of the COMs relative to CH3OH in G34.43+00.24 MM3 HC is found to be similar to those in high-mass hot cores, rather than those in hot corinos in low-mass star-forming regions. This result suggests that the physical conditions of the warm-up phase of G34.43+00.24 MM3 HC are similar to those of high-mass sources. On the other hand, the D2CO abundance relative to CH3OH in G34.43+00.24 MM3 HC is higher than that of other hot cores, and seems to be comparable to that of hot corinos. The relatively high D2CO/CH3OH ratio of G34.43+00.24 MM3 HC implies a long cold starless phase of G34.43+00.24 MM3 HC.

Production of complex organic molecules: H-atom addition versus UV irradiation

NASA Astrophysics Data System (ADS)

Chuang, K.-J.; Fedoseev, G.; Qasim, D.; Ioppolo, S.; van Dishoeck, E. F.; Linnartz, H.

2017-05-01

Complex organic molecules (COMs) have been identified in different environments in star-forming regions. Laboratory studies show that COMs form in the solid state, on icy grains, typically following a 'non-energetic' (atom-addition) or 'energetic' (UV-photon absorption) trigger. So far, such studies have been largely performed for single processes. Here, we present the first work that quantitatively investigates both the relative importance and the cumulative effect of '(non-)energetic' processing. We focus on astronomically relevant CO:CH3OH = 4:1 ice analogues exposed to doses relevant for the collapse stage of dense clouds. Hydrogenation experiments result in the formation of methyl formate (MF; HC(O)OCH3), glycolaldehyde (GA; HC(O)CH2OH) and ethylene glycol (EG; H2C(OH)CH2OH) at 14 K. The absolute abundances and the abundance fractions are found to be dependent on the H-atom/CO:CH3OH-molecule ratios and on the overall deposition rate. In the case that ices are exposed to UV photons only, several different COMs are found. Typically, the abundance fractions are 0.2 for MF, 0.3 for GA and 0.5 for EG as opposed to the values found in pure hydrogenation experiments without UV in which MF is largely absent: 0.0, 0.2-0.6 and 0.8-0.4, respectively. In experiments where both are applied, overall COM abundances drop to about half of those found in the pure UV irradiation experiments, but the composition fractions are very similar. This implies COM ratios can be used as a diagnostic tool to derive the processing history of an ice. Solid-state branching ratios derived here for GA and EG compare well with observations, while the MF case cannot be explained by solid-state conditions investigated here.

Clinician accessible tools for GUI computational models of transcranial electrical stimulation: BONSAI and SPHERES.

PubMed

Truong, Dennis Q; Hüber, Mathias; Xie, Xihe; Datta, Abhishek; Rahman, Asif; Parra, Lucas C; Dmochowski, Jacek P; Bikson, Marom

2014-01-01

Computational models of brain current flow during transcranial electrical stimulation (tES), including transcranial direct current stimulation (tDCS) and transcranial alternating current stimulation (tACS), are increasingly used to understand and optimize clinical trials. We propose that broad dissemination requires a simple graphical user interface (GUI) software that allows users to explore and design montages in real-time, based on their own clinical/experimental experience and objectives. We introduce two complimentary open-source platforms for this purpose: BONSAI and SPHERES. BONSAI is a web (cloud) based application (available at neuralengr.com/bonsai) that can be accessed through any flash-supported browser interface. SPHERES (available at neuralengr.com/spheres) is a stand-alone GUI application that allow consideration of arbitrary montages on a concentric sphere model by leveraging an analytical solution. These open-source tES modeling platforms are designed go be upgraded and enhanced. Trade-offs between open-access approaches that balance ease of access, speed, and flexibility are discussed. Copyright © 2014 Elsevier Inc. All rights reserved.

"Ask Argonne" - Edwin Campos, Research Meteorologist, Part 2

ScienceCinema

Edwin Campos

2017-12-09

Argonne's Edwin Campos has for the last two decades studied weather, and in particular, clouds. His research can help make solar power a more viable option for the U.S. and the world. In this video, Dr. Campos answers questions that were submitted by the public in response to his introductory video: http://www.youtube.com/watch?v=pfdoHz.... We will be posting a new "Ask Argonne" video every other month, on various topics. Keep an eye out for your next opportunity to submit a question and see if it gets answered - and if you get a shout-out on camera.

"Ask Argonne" - Edwin Campos, Research Meteorologist, Part 2

DOE Office of Scientific and Technical Information (OSTI.GOV)

Edwin Campos

2013-05-23

Argonne's Edwin Campos has for the last two decades studied weather, and in particular, clouds. His research can help make solar power a more viable option for the U.S. and the world. In this video, Dr. Campos answers questions that were submitted by the public in response to his introductory video: http://www.youtube.com/watch?v=pfdoHz.... We will be posting a new "Ask Argonne" video every other month, on various topics. Keep an eye out for your next opportunity to submit a question and see if it gets answered - and if you get a shout-out on camera.

The SunCloud project: An initiative for a development of a worldwide sunshine duration and cloudiness observations dataset

NASA Astrophysics Data System (ADS)

Sanchez-Lorenzo, A.

2010-09-01

One problem encountered when establishing the causes of global dimming and brightening is the limited number of long-term solar radiation series with accurate and calibrated measurements. For this reason, the analysis is often supported and extended with the use of other climatic variables such as sunshine duration and cloud cover. Specifically, sunshine duration is defined as the amount of time usually expressed in hours that direct solar radiation exceeds a certain threshold (usually taken at 120 W m-2). Consequently, this variable can be considered as an excellent proxy measure of solar radiation at interannual and decadal time scales, with the advantage that measurements of this variable were initiated in the late 19th century in different, worldwide, main meteorological stations. Nevertheless, detailed and up-to-date analysis of sunshine duration behavior on global or hemispheric scales are still missing. Thus, starting on September 2010 in the framework of different research projects, we will engage a worldwide compilation of the longest daily or monthly sunshine duration series from the late 19th century until present. Several quality control checks and homogenization methods will be applied to the generated sunshine dataset. The relationship between the more precise downward solar radiation series from the Global Energy Balance Archive (GEBA) and the homogenized sunshine series will be studied in order to reconstruct global and regional solar irradiance at the Earth's surface since the late 19th century. Since clouds are the main cause of interannual and decadal variability of radiation reaching the Earth's surface, as a complement to the long-term sunshine series we will also compile worldwide surface cloudiness observations. With this presentation we seek to encourage the climate community to contribute with their own local datasets to the SunCloud project. The SunCloud Team: M. Wild, Institute for Atmospheric and Climate Science, ETH Zurich, Switzerland (martin.wild@env.ethz.ch) E. Pallé, Institute of Astrophysics of the Canary Islands, Spain (epalle@iac.es) J. Calbó, Group of Environmental Physics, University of Girona, Spain (josep.calbo@udg.edu) M. Brunetti, Institute of Atmospheric Sciences and Climate, Italian National Research Council, Italy (m.brunetti@isac.cnr.it) G. Stanhill, Department of Environmental Physics and Irrigation, The Volcani Center, Israel (gerald@volcani.agri.gov.il) R. Brázdil, Institute of Geography, Masaryk University, Czech Republic (brazdil@sci.muni.cz) M. Barriendos, Department of Modern History, University of Barcelona, Spain (mbarriendos@ub.edu) C. Deser, National Center for Atmospheric Research, USA (cdeser@ucar.edu) P. Pereira, Department of Environmental Protection, Vilnius Gediminas Technical University, Lithuania (pereiraub@gmail.com) C. Azorin-Molina, The CEAM Foundation (Fundación Centro de Estudios Ambientales del Mediterráneo), Spain (cazorin@ceam.es) Q. You, Institute of Tibetan Plateau Research, Chinese Academy of Sciences, Beijing, China (yqingl@126.com)

INTEGRATION OF PANDA WORKLOAD MANAGEMENT SYSTEM WITH SUPERCOMPUTERS

DOE Office of Scientific and Technical Information (OSTI.GOV)

De, K; Jha, S; Maeno, T

Abstract The Large Hadron Collider (LHC), operating at the international CERN Laboratory in Geneva, Switzerland, is leading Big Data driven scientific explorations. Experiments at the LHC explore the funda- mental nature of matter and the basic forces that shape our universe, and were recently credited for the dis- covery of a Higgs boson. ATLAS, one of the largest collaborations ever assembled in the sciences, is at the forefront of research at the LHC. To address an unprecedented multi-petabyte data processing challenge, the ATLAS experiment is relying on a heterogeneous distributed computational infrastructure. The ATLAS experiment uses PanDA (Production and Datamore » Analysis) Workload Management System for managing the workflow for all data processing on over 140 data centers. Through PanDA, ATLAS physicists see a single computing facility that enables rapid scientific breakthroughs for the experiment, even though the data cen- ters are physically scattered all over the world. While PanDA currently uses more than 250000 cores with a peak performance of 0.3+ petaFLOPS, next LHC data taking runs will require more resources than Grid computing can possibly provide. To alleviate these challenges, LHC experiments are engaged in an ambitious program to expand the current computing model to include additional resources such as the opportunistic use of supercomputers. We will describe a project aimed at integration of PanDA WMS with supercomputers in United States, Europe and Russia (in particular with Titan supercomputer at Oak Ridge Leadership Com- puting Facility (OLCF), Supercomputer at the National Research Center Kurchatov Institute , IT4 in Ostrava, and others). The current approach utilizes a modified PanDA pilot framework for job submission to the supercomputers batch queues and local data management, with light-weight MPI wrappers to run single- threaded workloads in parallel on Titan s multi-core worker nodes. This implementation was tested with a variety of Monte-Carlo workloads on several supercomputing platforms. We will present our current accom- plishments in running PanDA WMS at supercomputers and demonstrate our ability to use PanDA as a portal independent of the computing facility s infrastructure for High Energy and Nuclear Physics, as well as other data-intensive science applications, such as bioinformatics and astro-particle physics.« less

On the representation of aerosol activation and its influence on model-derived estimates of the aerosol indirect effect

NASA Astrophysics Data System (ADS)

Rothenberg, Daniel; Avramov, Alexander; Wang, Chien

2018-06-01

Interactions between aerosol particles and clouds contribute a great deal of uncertainty to the scientific community's understanding of anthropogenic climate forcing. Aerosol particles serve as the nucleation sites for cloud droplets, establishing a direct linkage between anthropogenic particulate emissions and clouds in the climate system. To resolve this linkage, the community has developed parameterizations of aerosol activation which can be used in global climate models to interactively predict cloud droplet number concentrations (CDNCs). However, different activation schemes can exhibit different sensitivities to aerosol perturbations in different meteorological or pollution regimes. To assess the impact these different sensitivities have on climate forcing, we have coupled three different core activation schemes and variants with the CESM-MARC (two-Moment, Multi-Modal, Mixing-state-resolving Aerosol model for Research of Climate (MARC) coupled with the National Center for Atmospheric Research's (NCAR) Community Earth System Model (CESM; version 1.2)). Although the model produces a reasonable present-day CDNC climatology when compared with observations regardless of the scheme used, ΔCDNCs between the present and preindustrial era regionally increase by over 100 % in zonal mean when using the most sensitive parameterization. These differences in activation sensitivity may lead to a different evolution of the model meteorology, and ultimately to a spread of over 0.8 W m-2 in global average shortwave indirect effect (AIE) diagnosed from the model, a range which is as large as the inter-model spread from the AeroCom intercomparison. Model-derived AIE strongly scales with the simulated preindustrial CDNC burden, and those models with the greatest preindustrial CDNC tend to have the smallest AIE, regardless of their ΔCDNC. This suggests that present-day evaluations of aerosol-climate models may not provide useful constraints on the magnitude of the AIE, which will arise from differences in model estimates of the preindustrial aerosol and cloud climatology.

Comet Siding Spring Mars Flyby

NASA Image and Video Library

2017-12-08

On October 19, Comet Siding Spring will pass within 88,000 miles of Mars – just one third of the distance from the Earth to the Moon! Traveling at 33 miles per second and weighing as much as a small mountain, the comet hails from the outer fringes of our solar system, originating in a region of icy debris known as the Oort cloud. Comets from the Oort cloud are both ancient and rare. Since this is Comet Siding Spring’s first trip through the inner solar system, scientists are excited to learn more about its composition and the effects of its gas and dust on the Mars upper atmosphere. NASA will be watching closely before, during, and after the flyby with its entire fleet of Mars orbiters and rovers, along with the Hubble Space Telescope and dozens of instruments on Earth. The encounter is certain to teach us more about Oort cloud comets, the Martian atmosphere, and the solar system’s earliest ingredients. Learn more: www.youtube.com/watch?v=FG4KsatjFeI Credit: NASA’s Goddard Space Flight Center NASA image use policy. NASA Goddard Space Flight Center enables NASA’s mission through four scientific endeavors: Earth Science, Heliophysics, Solar System Exploration, and Astrophysics. Goddard plays a leading role in NASA’s accomplishments by contributing compelling scientific knowledge to advance the Agency’s mission. Follow us on Twitter Like us on Facebook Find us on Instagram

Rail-dbGaP: analyzing dbGaP-protected data in the cloud with Amazon Elastic MapReduce.

PubMed

Nellore, Abhinav; Wilks, Christopher; Hansen, Kasper D; Leek, Jeffrey T; Langmead, Ben

2016-08-15

Public archives contain thousands of trillions of bases of valuable sequencing data. More than 40% of the Sequence Read Archive is human data protected by provisions such as dbGaP. To analyse dbGaP-protected data, researchers must typically work with IT administrators and signing officials to ensure all levels of security are implemented at their institution. This is a major obstacle, impeding reproducibility and reducing the utility of archived data. We present a protocol and software tool for analyzing protected data in a commercial cloud. The protocol, Rail-dbGaP, is applicable to any tool running on Amazon Web Services Elastic MapReduce. The tool, Rail-RNA v0.2, is a spliced aligner for RNA-seq data, which we demonstrate by running on 9662 samples from the dbGaP-protected GTEx consortium dataset. The Rail-dbGaP protocol makes explicit for the first time the steps an investigator must take to develop Elastic MapReduce pipelines that analyse dbGaP-protected data in a manner compliant with NIH guidelines. Rail-RNA automates implementation of the protocol, making it easy for typical biomedical investigators to study protected RNA-seq data, regardless of their local IT resources or expertise. Rail-RNA is available from http://rail.bio Technical details on the Rail-dbGaP protocol as well as an implementation walkthrough are available at https://github.com/nellore/rail-dbgap Detailed instructions on running Rail-RNA on dbGaP-protected data using Amazon Web Services are available at http://docs.rail.bio/dbgap/ : anellore@gmail.com or langmea@cs.jhu.edu Supplementary data are available at Bioinformatics online. © The Author 2016. Published by Oxford University Press.

Climateprediction.com: Public Involvement, Multi-Million Member Ensembles and Systematic Uncertainty Analysis

NASA Astrophysics Data System (ADS)

Stainforth, D. A.; Allen, M.; Kettleborough, J.; Collins, M.; Heaps, A.; Stott, P.; Wehner, M.

2001-12-01

The climateprediction.com project is preparing to carry out the first systematic uncertainty analysis of climate forecasts using large ensembles of GCM climate simulations. This will be done by involving schools, businesses and members of the public, and utilizing the novel technology of distributed computing. Each participant will be asked to run one member of the ensemble on their PC. The model used will initially be the UK Met Office's Unified Model (UM). It will be run under Windows and software will be provided to enable those involved to view their model output as it develops. The project will use this method to carry out large perturbed physics GCM ensembles and thereby analyse the uncertainty in the forecasts from such models. Each participant/ensemble member will therefore have a version of the UM in which certain aspects of the model physics have been perturbed from their default values. Of course the non-linear nature of the system means that it will be necessary to look not just at perturbations to individual parameters in specific schemes, such as the cloud parameterization, but also to the many combinations of perturbations. This rapidly leads to the need for very large, perhaps multi-million member ensembles, which could only be undertaken using the distributed computing methodology. The status of the project will be presented and the Windows client will be demonstrated. In addition, initial results will be presented from beta test runs using a demo release for Linux PCs and Alpha workstations. Although small by comparison to the whole project, these pilot results constitute a 20-50 member perturbed physics climate ensemble with results indicating how climate sensitivity can be substantially affected by individual parameter values in the cloud scheme.

Bionimbus: a cloud for managing, analyzing and sharing large genomics datasets.

PubMed

Heath, Allison P; Greenway, Matthew; Powell, Raymond; Spring, Jonathan; Suarez, Rafael; Hanley, David; Bandlamudi, Chai; McNerney, Megan E; White, Kevin P; Grossman, Robert L

2014-01-01

As large genomics and phenotypic datasets are becoming more common, it is increasingly difficult for most researchers to access, manage, and analyze them. One possible approach is to provide the research community with several petabyte-scale cloud-based computing platforms containing these data, along with tools and resources to analyze it. Bionimbus is an open source cloud-computing platform that is based primarily upon OpenStack, which manages on-demand virtual machines that provide the required computational resources, and GlusterFS, which is a high-performance clustered file system. Bionimbus also includes Tukey, which is a portal, and associated middleware that provides a single entry point and a single sign on for the various Bionimbus resources; and Yates, which automates the installation, configuration, and maintenance of the software infrastructure required. Bionimbus is used by a variety of projects to process genomics and phenotypic data. For example, it is used by an acute myeloid leukemia resequencing project at the University of Chicago. The project requires several computational pipelines, including pipelines for quality control, alignment, variant calling, and annotation. For each sample, the alignment step requires eight CPUs for about 12 h. BAM file sizes ranged from 5 GB to 10 GB for each sample. Most members of the research community have difficulty downloading large genomics datasets and obtaining sufficient storage and computer resources to manage and analyze the data. Cloud computing platforms, such as Bionimbus, with data commons that contain large genomics datasets, are one choice for broadening access to research data in genomics. Published by the BMJ Publishing Group Limited. For permission to use (where not already granted under a licence) please go to http://group.bmj.com/group/rights-licensing/permissions.

Floating into Deep Space

NASA Astrophysics Data System (ADS)

La Frenais, R.; Saraceno, T.; Powell, J.

2014-04-01

Is it possible for spaceflight to become more sustainable? Artist and architect Tomas Saraceno proposes a long-term artscience research project based on his initial work with solar balloons to join with the efforts of engineers such as John Powell, working on the Airship to Orbit experiments, which describe a three stage process of using airships to fly to a large suborbital "Dark Sky Station' then literally floating into orbit with additional electrical and chemical propulsion. (See: http://www.jpaerospace.com) In his artworks Tomás Saraceno proposes cell-like flying cities as possible architectonic living spaces in direct reference to Buckminster Fuller's Cloud Nine (circa 1960). The fantastic architectural utopia Cloud Nine consists of a freely floating sphere measuring one mile in diameter that offers living space to several autonomous communities encompassing thousands of inhabitants each. The notion of the cloud is essential to the artist's work. The cloud as metaphor stands for artistic intention, for the meaning of territory and border in today's (urban) society, and for exploring possibilities for the sustainable development of the human living environment. In Saraceno's work this environment is not limited to the earth, but is explicitly conceived to reach into outer space. (Biomimetic Constructions- On the works of Tomás Saraceno By Katharina Schlüter) Saraceno is also interested in human factors experiments using his existing constructions as analogue environments for living on Mars and is proposing carry out a series of workshops, experiments and solar balloon launces in White Sands desert in early 2016 in collaboration with the curator Dr Rob La Frenais, the Rubin Center at The University of Texas at El Paso and various scientific partners.

Venus atmosphere from Venus Express

NASA Astrophysics Data System (ADS)

Titov, Dmitri; Taylor, Fredric W.; Svedhem, Håkan; Titov, D.; Svedhem, H.; Taylor, F. W.; Bertaux, J.-L.; Drossart, P.; Haeusler, B.; Korablev, O. I.; Markiewicz, W. J.; Paetzold, M.; Piccioni, G.; Vandaele, A.-C.

Since April 2006 Venus Express has been performing a global survey of the remarkably dense, cloudy, and dynamic atmosphere of our near neighbour. A consistent picture of the climate on Venus is emerging on the basis of the new data on the global temperature structure, the com-position and its variations, the cloud morphology at various levels, the atmospheric dynamics and general circulation, and near-infrared emissions from trace species such as oxygen in the mesosphere. Vertical profiles of atmospheric temperature in the mesosphere and upper tropo-sphere show strong variability correlated with changes in the cloud top structure and many fine details indicating dynamical processes. Temperature sounding also shows that the main cloud deck at 50-60 km is convectively unstable over large portion of the planet, in agreement with the analysis of UV images. Imaging also reveals strong latitudinal variations and significant temporal changes in the global cloud top morphology, which will inevitably modulate the solar energy deposited in the atmosphere. The cloud top altitude varies from 72 km in the low and middle latitudes to 64 km in the polar region, marking vast polar depressions that form as a re-sult of the Hadley-type meridional circulation. Stellar and solar occultation measurements have revealed an extended upper haze of submicron particles and provided information on its optical properties. Solar occultation observations and deep atmosphere spectroscopy have quantified the distribution of the major trace gases H2O, SO2, CO, COS above and below the clouds, and so provided important input and validation for models of chemical cycles and dynamical trans-port. Cloud motion monitoring has characterised the mean state of the atmospheric circulation as well as its variability. Low and middle latitudes show an almost constant zonal wind speed of 100+/-20 m/s at the cloud tops and vertical wind shear of 2-3 m/s/km. Towards the pole, the wind speed drops quickly and the vertical shear vanishes. The meridional poleward wind ranges from 0 to about 15 m/s and there is some indication that it may change its direction at high latitudes. Comparison of the thermal wind field derived from temperature sounding to the cloud tracked winds confirms the approximate validity of cyclostrophic balance, at least in the latitude range from 30 S to 70 S. Maps of the non-LTE infrared emissions in the lines of O2, NO, CO2, OH originating near the mesopause at 95-105 km altitude show that the airglow peak intensity occurs close to the anti-solar point and its location depends on species. These observations promise significant improvement of thermospheric circulation models.

Ash plume from Eyjafjallajokull Volcano, Iceland May 6th View

NASA Image and Video Library

2010-05-06

NASA satellite image acquired May 6, 2010 at 11 :55 UTC To view a detail of this image go to: www.flickr.com/photos/gsfc/4583711511/ NASA Satellite Sees a Darker Ash Plume From Iceland Volcano NASA's Terra satellite flew over the Eyjafjallajokull Volcano, Iceland, on May 6 at 11:55 UTC (7:55 a.m. EDT). The Moderate Resolution Imaging Spectroradiometer instrument known as MODIS that flies onboard Terra, captured a visible image of the ash plume. The plume was blowing east then southeast over the Northern Atlantic. The satellite image shows that the plume is at a lower level in the atmosphere than the clouds that lie to its east, as the brown plume appears to slide underneath the white clouds. Satellite: Terra NASA/GSFC/Jeff Schmaltz/MODIS Land Rapid Response Team To learn more about MODIS go to: www.nasa.gov/topics/earth/features/iceland-volcano-plume.... NASA Goddard Space Flight Center is home to the nation's largest organization of combined scientists, engineers and technologists that build spacecraft, instruments and new technology to study the Earth, the sun, our solar system, and the universe.

Earthscape, a Multi-Purpose Interactive 3d Globe Viewer for Hybrid Data Visualization and Analysis

NASA Astrophysics Data System (ADS)

Sarthou, A.; Mas, S.; Jacquin, M.; Moreno, N.; Salamon, A.

2015-08-01

The hybrid visualization and interaction tool EarthScape is presented here. The software is able to display simultaneously LiDAR point clouds, draped videos with moving footprint, volume scientific data (using volume rendering, isosurface and slice plane), raster data such as still satellite images, vector data and 3D models such as buildings or vehicles. The application runs on touch screen devices such as tablets. The software is based on open source libraries, such as OpenSceneGraph, osgEarth and OpenCV, and shader programming is used to implement volume rendering of scientific data. The next goal of EarthScape is to perform data analysis using ENVI Services Engine, a cloud data analysis solution. EarthScape is also designed to be a client of Jagwire which provides multisource geo-referenced video fluxes. When all these components will be included, EarthScape will be a multi-purpose platform that will provide at the same time data analysis, hybrid visualization and complex interactions. The software is available on demand for free at france@exelisvis.com.

Estimating the center of mass of a free-floating body in microgravity.

PubMed

Lejeune, L; Casellato, C; Pattyn, N; Neyt, X; Migeotte, P-F

2013-01-01

This paper addresses the issue of estimating the position of the center of mass (CoM) of a free-floating object of unknown mass distribution in microgravity using a stereoscopic imaging system. The method presented here is applied to an object of known mass distribution for validation purposes. In the context of a study of 3-dimensional ballistocardiography in microgravity, and the elaboration of a physical model of the cardiovascular adaptation to weightlessness, the hypothesis that the fluid shift towards the head of astronauts induces a significant shift of their CoM needs to be tested. The experiments were conducted during the 57th parabolic flight campaign of the European Space Agency (ESA). At the beginning of the microgravity phase, the object was given an initial translational and rotational velocity. A 3D point cloud corresponding to the object was then generated, to which a motion-based method inspired by rigid body physics was applied. Through simulations, the effects of the centroid-to-CoM distance and the number of frames of the sequence are investigated. In experimental conditions, considering the important residual accelerations of the airplane during the microgravity phases, CoM estimation errors (16 to 76 mm) were consistent with simulations. Overall, our results suggest that the method has a good potential for its later generalization to a free-floating human body in a weightless environment.

A Combined Experimental and Theoretical Study on the Formation of Interstellar Propylene Oxide (CH3CHCH2O)—A Chiral Molecule

NASA Astrophysics Data System (ADS)

Bergantini, Alexandre; Abplanalp, Matthew J.; Pokhilko, Pavel; Krylov, Anna I.; Shingledecker, Christopher N.; Herbst, Eric; Kaiser, Ralf I.

2018-06-01

This work reveals via a combined experimental, computational, and astrochemical modeling study that racemic propylene oxide (c-C3H6O)—the first chiral molecule detected outside Earth toward the high-mass star-forming region Sagittarius B2(N)—can be synthesized by non-equilibrium reactions initiated by the effects of secondary electrons generated in the track of cosmic rays interacting with ice-coated interstellar grains through excited-state and spin-forbidden reaction pathways operating within low-temperature interstellar ices at 10 K. Our findings confront traditional hypotheses that thermal chemistries followed by processing of interstellar grains dictate the formation of complex organic molecules (COMs) in molecular clouds. Instead, we reveal a hitherto poorly quantified reaction class involving excited-state and spin-forbidden chemistry leading to racemic mixtures of COMs inside interstellar ices prior to their sublimation in star-forming regions. This fundamental production mechanism is of essential consequence in aiding our understanding of the origin and evolution of chiral molecules in the universe.

Globally distributed software defined storage (proposal)

NASA Astrophysics Data System (ADS)

Shevel, A.; Khoruzhnikov, S.; Grudinin, V.; Sadov, O.; Kairkanov, A.

2017-10-01

The volume of the coming data in HEP is growing. The volume of the data to be held for a long time is growing as well. Large volume of data - big data - is distributed around the planet. The methods, approaches how to organize and manage the globally distributed data storage are required. The distributed storage has several examples for personal needs like own-cloud.org, pydio.com, seafile.com, sparkleshare.org. For enterprise-level there is a number of systems: SWIFT - distributed storage systems (part of Openstack), CEPH and the like which are mostly object storage. When several data center’s resources are integrated, the organization of data links becomes very important issue especially if several parallel data links between data centers are used. The situation in data centers and in data links may vary each hour. All that means each part of distributed data storage has to be able to rearrange usage of data links and storage servers in each data center. In addition, for each customer of distributed storage different requirements could appear. The above topics are planned to be discussed in data storage proposal.

What Controls the Vertical Distribution of Aerosol? Relationships Between Process Sensitivity in HadGEM3-UKCA and Inter-Model Variation from AeroCom Phase II

NASA Technical Reports Server (NTRS)

Kipling, Zak; Stier, Philip; Johnson, Colin E.; Mann, Graham W.; Bellouin, Nicolas; Bauer, Susanne E.; Bergman, Tommi; Chin, Mian; Diehl, Thomas; Ghan, Steven J.;

Running climate model on a commercial cloud computing environment: A case study using Community Earth System Model (CESM) on Amazon AWS

NASA Astrophysics Data System (ADS)

Chen, Xiuhong; Huang, Xianglei; Jiao, Chaoyi; Flanner, Mark G.; Raeker, Todd; Palen, Brock

2017-01-01

The suites of numerical models used for simulating climate of our planet are usually run on dedicated high-performance computing (HPC) resources. This study investigates an alternative to the usual approach, i.e. carrying out climate model simulations on commercially available cloud computing environment. We test the performance and reliability of running the CESM (Community Earth System Model), a flagship climate model in the United States developed by the National Center for Atmospheric Research (NCAR), on Amazon Web Service (AWS) EC2, the cloud computing environment by Amazon.com, Inc. StarCluster is used to create virtual computing cluster on the AWS EC2 for the CESM simulations. The wall-clock time for one year of CESM simulation on the AWS EC2 virtual cluster is comparable to the time spent for the same simulation on a local dedicated high-performance computing cluster with InfiniBand connections. The CESM simulation can be efficiently scaled with the number of CPU cores on the AWS EC2 virtual cluster environment up to 64 cores. For the standard configuration of the CESM at a spatial resolution of 1.9° latitude by 2.5° longitude, increasing the number of cores from 16 to 64 reduces the wall-clock running time by more than 50% and the scaling is nearly linear. Beyond 64 cores, the communication latency starts to outweigh the benefit of distributed computing and the parallel speedup becomes nearly unchanged.

Unsettled weather across central Australia

NASA Image and Video Library

2017-12-08

In late July 2013, a low pressure system off Australia’s southeast coast and moist onshore winds combined to create unsettled weather across central Australia – and a striking image of a broad cloud band across the stark winter landscape. The Moderate Resolution Imaging Spectroradiometer (MODIS) aboard NASA’s Terra satellite captured this true-color image on July 22 at 01:05 UTC (10:35 a.m. Australian Central Standard Time). To the west of the low pressure trough the skies are clear and dry. To the east, the broad band of bright white clouds obscures the landscape. The system brought wind, precipitation and cooler temperatures to the region. The same day as MODIS captured this image, the Naval Research Lab (NRL) published an edition of the Global Storm Tracker (GST), which gave a world-wide view of the low-pressure systems across the world. This tracker shows the entire cloud band across Australia, as well as the location of the low pressure system. A good view of the Storm Tracker is provided by Red Orbit at: www.redorbit.com/media/uploads/2013/07/072213-weather-003... Credit: NASA/GSFC/Jeff Schmaltz/MODIS Land Rapid Response Team NASA image use policy. NASA Goddard Space Flight Center enables NASA’s mission through four scientific endeavors: Earth Science, Heliophysics, Solar System Exploration, and Astrophysics. Goddard plays a leading role in NASA’s accomplishments by contributing compelling scientific knowledge to advance the Agency’s mission. Follow us on Twitter Like us on Facebook Find us on Instagram

Remote Monitoring of Soil Water Content, Temperature, and Heat Flow Using Low-Cost Cellular (3G) IoT Technology

NASA Astrophysics Data System (ADS)

Ham, J. M.

2016-12-01

New microprocessor boards, open-source sensors, and cloud infrastructure developed for the Internet of Things (IoT) can be used to create low-cost monitoring systems for environmental research. This project describes two applications in soil science and hydrology: 1) remote monitoring of the soil temperature regime near oil and gas operations to detect the thermal signature associated with the natural source zone degradation of hydrocarbon contaminants in the vadose zone, and 2) remote monitoring of soil water content near the surface as part of a global citizen science network. In both cases, prototype data collection systems were built around the cellular (2G/3G) "Electron" microcontroller (www.particle.io). This device allows connectivity to the cloud using a low-cost global SIM and data plan. The systems have cellular connectivity in over 100 countries and data can be logged to the cloud for storage. Users can view data real time over any internet connection or via their smart phone. For both projects, data logging, storage, and visualization was done using IoT services like Thingspeak (thingspeak.com). The soil thermal monitoring system was tested on experimental plots in Colorado USA to evaluate the accuracy and reliability of different temperature sensors and 3D printed housings. The soil water experiment included comparison opens-source capacitance-based sensors to commercial versions. Results demonstrate the power of leveraging IoT technology for field research.

Evaluation of the aerosol vertical distribution in global aerosol models through comparison against CALIOP measurements: AeroCom phase II results: AEROSOL PROFILES IN AEROCOM II GCM

DOE Office of Scientific and Technical Information (OSTI.GOV)

Koffi, Brigitte; Schulz, Michael; Bréon, François-Marie

2016-06-27

The ability of eleven models in simulating the aerosol vertical distribution from regional to global scales, as part of the second phase of the AeroCom model inter-comparison initiative (AeroCom II) is assessed and compared to results of the first phase. The evaluation is performed using a global monthly gridded dataset of aerosol extinction profiles built on purpose from the CALIOP (Cloud-Aerosol Lidar with Orthogonal Polarization) Layer Product 3.01. Results over 12 sub-continental regions show that five models improved whereas three degraded in reproducing the Zα 0-6 km mean extinction height diagnostic, which is computed over the 0-6 km altitude rangemore » for each studied region and season. While the models’ performance remains highly variable, it has generally improved in terms of inter-regional diversity and seasonality. The biases in Zα 0-6 km have notably decreased in the U.S. and European industrial and downwind maritime regions, whereas the timing of the Zα 0-6 km peak season has improved for all but two models. However, most of the models now show a Zα 0-6 km underestimation over land, notably in the dust and biomass burning regions in Asia and Africa. At global scale, the AeroCom II models better reproduce the Zα 0-6 km latitudinal variability over ocean than over land. Hypotheses for the (changes in the) the performance of the individual models and for the inter-model diversity are discussed. We also provide an analysis of the CALIOP limitations and uncertainties that can contribute to the differences between the simulations and observations.« less

Rainbow: a tool for large-scale whole-genome sequencing data analysis using cloud computing.

PubMed

Zhao, Shanrong; Prenger, Kurt; Smith, Lance; Messina, Thomas; Fan, Hongtao; Jaeger, Edward; Stephens, Susan

2013-06-27

Technical improvements have decreased sequencing costs and, as a result, the size and number of genomic datasets have increased rapidly. Because of the lower cost, large amounts of sequence data are now being produced by small to midsize research groups. Crossbow is a software tool that can detect single nucleotide polymorphisms (SNPs) in whole-genome sequencing (WGS) data from a single subject; however, Crossbow has a number of limitations when applied to multiple subjects from large-scale WGS projects. The data storage and CPU resources that are required for large-scale whole genome sequencing data analyses are too large for many core facilities and individual laboratories to provide. To help meet these challenges, we have developed Rainbow, a cloud-based software package that can assist in the automation of large-scale WGS data analyses. Here, we evaluated the performance of Rainbow by analyzing 44 different whole-genome-sequenced subjects. Rainbow has the capacity to process genomic data from more than 500 subjects in two weeks using cloud computing provided by the Amazon Web Service. The time includes the import and export of the data using Amazon Import/Export service. The average cost of processing a single sample in the cloud was less than 120 US dollars. Compared with Crossbow, the main improvements incorporated into Rainbow include the ability: (1) to handle BAM as well as FASTQ input files; (2) to split large sequence files for better load balance downstream; (3) to log the running metrics in data processing and monitoring multiple Amazon Elastic Compute Cloud (EC2) instances; and (4) to merge SOAPsnp outputs for multiple individuals into a single file to facilitate downstream genome-wide association studies. Rainbow is a scalable, cost-effective, and open-source tool for large-scale WGS data analysis. For human WGS data sequenced by either the Illumina HiSeq 2000 or HiSeq 2500 platforms, Rainbow can be used straight out of the box. Rainbow is available for third-party implementation and use, and can be downloaded from http://s3.amazonaws.com/jnj_rainbow/index.html.

Rainbow: a tool for large-scale whole-genome sequencing data analysis using cloud computing

PubMed Central

2013-01-01

Background Technical improvements have decreased sequencing costs and, as a result, the size and number of genomic datasets have increased rapidly. Because of the lower cost, large amounts of sequence data are now being produced by small to midsize research groups. Crossbow is a software tool that can detect single nucleotide polymorphisms (SNPs) in whole-genome sequencing (WGS) data from a single subject; however, Crossbow has a number of limitations when applied to multiple subjects from large-scale WGS projects. The data storage and CPU resources that are required for large-scale whole genome sequencing data analyses are too large for many core facilities and individual laboratories to provide. To help meet these challenges, we have developed Rainbow, a cloud-based software package that can assist in the automation of large-scale WGS data analyses. Results Here, we evaluated the performance of Rainbow by analyzing 44 different whole-genome-sequenced subjects. Rainbow has the capacity to process genomic data from more than 500 subjects in two weeks using cloud computing provided by the Amazon Web Service. The time includes the import and export of the data using Amazon Import/Export service. The average cost of processing a single sample in the cloud was less than 120 US dollars. Compared with Crossbow, the main improvements incorporated into Rainbow include the ability: (1) to handle BAM as well as FASTQ input files; (2) to split large sequence files for better load balance downstream; (3) to log the running metrics in data processing and monitoring multiple Amazon Elastic Compute Cloud (EC2) instances; and (4) to merge SOAPsnp outputs for multiple individuals into a single file to facilitate downstream genome-wide association studies. Conclusions Rainbow is a scalable, cost-effective, and open-source tool for large-scale WGS data analysis. For human WGS data sequenced by either the Illumina HiSeq 2000 or HiSeq 2500 platforms, Rainbow can be used straight out of the box. Rainbow is available for third-party implementation and use, and can be downloaded from http://s3.amazonaws.com/jnj_rainbow/index.html. PMID:23802613

OntoMaton: a bioportal powered ontology widget for Google Spreadsheets.

PubMed

Maguire, Eamonn; González-Beltrán, Alejandra; Whetzel, Patricia L; Sansone, Susanna-Assunta; Rocca-Serra, Philippe

2013-02-15

Data collection in spreadsheets is ubiquitous, but current solutions lack support for collaborative semantic annotation that would promote shared and interdisciplinary annotation practices, supporting geographically distributed players. OntoMaton is an open source solution that brings ontology lookup and tagging capabilities into a cloud-based collaborative editing environment, harnessing Google Spreadsheets and the NCBO Web services. It is a general purpose, format-agnostic tool that may serve as a component of the ISA software suite. OntoMaton can also be used to assist the ontology development process. OntoMaton is freely available from Google widgets under the CPAL open source license; documentation and examples at: https://github.com/ISA-tools/OntoMaton.

Simple re-instantiation of small databases using cloud computing.

PubMed

Tan, Tin Wee; Xie, Chao; De Silva, Mark; Lim, Kuan Siong; Patro, C Pawan K; Lim, Shen Jean; Govindarajan, Kunde Ramamoorthy; Tong, Joo Chuan; Choo, Khar Heng; Ranganathan, Shoba; Khan, Asif M

2013-01-01

Small bioinformatics databases, unlike institutionally funded large databases, are vulnerable to discontinuation and many reported in publications are no longer accessible. This leads to irreproducible scientific work and redundant effort, impeding the pace of scientific progress. We describe a Web-accessible system, available online at http://biodb100.apbionet.org, for archival and future on demand re-instantiation of small databases within minutes. Depositors can rebuild their databases by downloading a Linux live operating system (http://www.bioslax.com), preinstalled with bioinformatics and UNIX tools. The database and its dependencies can be compressed into an ".lzm" file for deposition. End-users can search for archived databases and activate them on dynamically re-instantiated BioSlax instances, run as virtual machines over the two popular full virtualization standard cloud-computing platforms, Xen Hypervisor or vSphere. The system is adaptable to increasing demand for disk storage or computational load and allows database developers to use the re-instantiated databases for integration and development of new databases. Herein, we demonstrate that a relatively inexpensive solution can be implemented for archival of bioinformatics databases and their rapid re-instantiation should the live databases disappear.

Simple re-instantiation of small databases using cloud computing

PubMed Central

2013-01-01

Background Small bioinformatics databases, unlike institutionally funded large databases, are vulnerable to discontinuation and many reported in publications are no longer accessible. This leads to irreproducible scientific work and redundant effort, impeding the pace of scientific progress. Results We describe a Web-accessible system, available online at http://biodb100.apbionet.org, for archival and future on demand re-instantiation of small databases within minutes. Depositors can rebuild their databases by downloading a Linux live operating system (http://www.bioslax.com), preinstalled with bioinformatics and UNIX tools. The database and its dependencies can be compressed into an ".lzm" file for deposition. End-users can search for archived databases and activate them on dynamically re-instantiated BioSlax instances, run as virtual machines over the two popular full virtualization standard cloud-computing platforms, Xen Hypervisor or vSphere. The system is adaptable to increasing demand for disk storage or computational load and allows database developers to use the re-instantiated databases for integration and development of new databases. Conclusions Herein, we demonstrate that a relatively inexpensive solution can be implemented for archival of bioinformatics databases and their rapid re-instantiation should the live databases disappear. PMID:24564380

Fragment assignment in the cloud with eXpress-D

PubMed Central

2013-01-01

Background Probabilistic assignment of ambiguously mapped fragments produced by high-throughput sequencing experiments has been demonstrated to greatly improve accuracy in the analysis of RNA-Seq and ChIP-Seq, and is an essential step in many other sequence census experiments. A maximum likelihood method using the expectation-maximization (EM) algorithm for optimization is commonly used to solve this problem. However, batch EM-based approaches do not scale well with the size of sequencing datasets, which have been increasing dramatically over the past few years. Thus, current approaches to fragment assignment rely on heuristics or approximations for tractability. Results We present an implementation of a distributed EM solution to the fragment assignment problem using Spark, a data analytics framework that can scale by leveraging compute clusters within datacenters–“the cloud”. We demonstrate that our implementation easily scales to billions of sequenced fragments, while providing the exact maximum likelihood assignment of ambiguous fragments. The accuracy of the method is shown to be an improvement over the most widely used tools available and can be run in a constant amount of time when cluster resources are scaled linearly with the amount of input data. Conclusions The cloud offers one solution for the difficulties faced in the analysis of massive high-thoughput sequencing data, which continue to grow rapidly. Researchers in bioinformatics must follow developments in distributed systems–such as new frameworks like Spark–for ways to port existing methods to the cloud and help them scale to the datasets of the future. Our software, eXpress-D, is freely available at: http://github.com/adarob/express-d. PMID:24314033

H-atom addition and abstraction reactions in mixed CO, H2CO and CH3OH ices - an extended view on complex organic molecule formation

NASA Astrophysics Data System (ADS)

Chuang, K.-J.; Fedoseev, G.; Ioppolo, S.; van Dishoeck, E. F.; Linnartz, H.

2016-01-01

Complex organic molecules (COMs) have been observed not only in the hot cores surrounding low- and high-mass protostars, but also in cold dark clouds. Therefore, it is interesting to understand how such species can be formed without the presence of embedded energy sources. We present new laboratory experiments on the low-temperature solid state formation of three complex molecules - methyl formate (HC(O)OCH3), glycolaldehyde (HC(O)CH2OH) and ethylene glycol (H2C(OH)CH2OH) - through recombination of free radicals formed via H-atom addition and abstraction reactions at different stages in the CO→H2CO→CH3OH hydrogenation network at 15 K. The experiments extend previous CO hydrogenation studies and aim at resembling the physical-chemical conditions typical of the CO freeze-out stage in dark molecular clouds, when H2CO and CH3OH form by recombination of accreting CO molecules and H-atoms on ice grains. We confirm that H2CO, once formed through CO hydrogenation, not only yields CH3OH through ongoing H-atom addition reactions, but is also subject to H-atom-induced abstraction reactions, yielding CO again. In a similar way, H2CO is also formed in abstraction reactions involving CH3OH. The dominant methanol H-atom abstraction product is expected to be CH2OH, while H-atom additions to H2CO should at least partially proceed through CH3O intermediate radicals. The occurrence of H-atom abstraction reactions in ice mantles leads to more reactive intermediates (HCO, CH3O and CH2OH) than previously thought, when assuming sequential H-atom addition reactions only. This enhances the probability to form COMs through radical-radical recombination without the need of UV photolysis or cosmic rays as external triggers.

A Cloud-Based Infrastructure for Near-Real-Time Processing and Dissemination of NPP Data

NASA Astrophysics Data System (ADS)

Evans, J. D.; Valente, E. G.; Chettri, S. S.

2011-12-01

We are building a scalable cloud-based infrastructure for generating and disseminating near-real-time data products from a variety of geospatial and meteorological data sources, including the new National Polar-Orbiting Environmental Satellite System (NPOESS) Preparatory Project (NPP). Our approach relies on linking Direct Broadcast and other data streams to a suite of scientific algorithms coordinated by NASA's International Polar-Orbiter Processing Package (IPOPP). The resulting data products are directly accessible to a wide variety of end-user applications, via industry-standard protocols such as OGC Web Services, Unidata Local Data Manager, or OPeNDAP, using open source software components. The processing chain employs on-demand computing resources from Amazon.com's Elastic Compute Cloud and NASA's Nebula cloud services. Our current prototype targets short-term weather forecasting, in collaboration with NASA's Short-term Prediction Research and Transition (SPoRT) program and the National Weather Service. Direct Broadcast is especially crucial for NPP, whose current ground segment is unlikely to deliver data quickly enough for short-term weather forecasters and other near-real-time users. Direct Broadcast also allows full local control over data handling, from the receiving antenna to end-user applications: this provides opportunities to streamline processes for data ingest, processing, and dissemination, and thus to make interpreted data products (Environmental Data Records) available to practitioners within minutes of data capture at the sensor. Cloud computing lets us grow and shrink computing resources to meet large and rapid fluctuations in data availability (twice daily for polar orbiters) - and similarly large fluctuations in demand from our target (near-real-time) users. This offers a compelling business case for cloud computing: the processing or dissemination systems can grow arbitrarily large to sustain near-real time data access despite surges in data volumes or user demand, but that computing capacity (and hourly costs) can be dropped almost instantly once the surge passes. Cloud computing also allows low-risk experimentation with a variety of machine architectures (processor types; bandwidth, memory, and storage capacities, etc.) and of system configurations (including massively parallel computing patterns). Finally, our service-based approach (in which user applications invoke software processes on a Web-accessible server) facilitates access into datasets of arbitrary size and resolution, and allows users to request and receive tailored products on demand. To maximize the usefulness and impact of our technology, we have emphasized open, industry-standard software interfaces. We are also using and developing open source software to facilitate the widespread adoption of similar, derived, or interoperable systems for processing and serving near-real-time data from NPP and other sources.

Building a Dashboard of the Planet with Google Earth and Earth Engine

NASA Astrophysics Data System (ADS)

Moore, R. T.; Hancher, M.

2016-12-01

In 2005 Google Earth, a popular 3-D virtual globe, was first released. Scientists immediately recognized how it could be used to tell stories about the Earth. From 2006 to 2009, the "Virtual Globes" sessions of AGU included innovative examples of scientists and educators using Google Earth, and since that time it has become a commonplace tool for communicating scientific results. In 2009 Google Earth Engine, a cloud-based platform for planetary-scale geospatial analysis, was first announced. Earth Engine was initially used to extract information about the world's forests from raw Landsat data. Since then, the platform has proven highly effective for general analysis of georeferenced data, and users have expanded the list of use cases to include high-impact societal issues such as conservation, drought, disease, food security, water management, climate change and environmental monitoring. To support these use cases, the platform has continuously evolved with new datasets, analysis functions, and user interface tools. This talk will give an overview of the latest Google Earth and Earth Engine functionality that allow partners to understand, monitor and tell stories about of our living, breathing Earth. https://earth.google.com https://earthengine.google.com

Host Model Uncertainty in Aerosol Radiative Effects: the AeroCom Prescribed Experiment and Beyond

NASA Astrophysics Data System (ADS)

Stier, Philip; Schutgens, Nick; Bian, Huisheng; Boucher, Olivier; Chin, Mian; Ghan, Steven; Huneeus, Nicolas; Kinne, Stefan; Lin, Guangxing; Myhre, Gunnar; Penner, Joyce; Randles, Cynthia; Samset, Bjorn; Schulz, Michael; Yu, Hongbin; Zhou, Cheng; Bellouin, Nicolas; Ma, Xiaoyan; Yu, Fangqun; Takemura, Toshihiko

2013-04-01

Anthropogenic and natural aerosol radiative effects are recognized to affect global and regional climate. Multi-model "diversity" in estimates of the aerosol radiative effect is often perceived as a measure of the uncertainty in modelling aerosol itself. However, current aerosol models vary considerably in model components relevant for the calculation of aerosol radiative forcings and feedbacks and the associated "host-model uncertainties" are generally convoluted with the actual uncertainty in aerosol modelling. In the AeroCom Prescribed intercomparison study we systematically isolate and quantify host model uncertainties on aerosol forcing experiments through prescription of identical aerosol radiative properties in eleven participating models. Host model errors in aerosol radiative forcing are largest in regions of uncertain host model components, such as stratocumulus cloud decks or areas with poorly constrained surface albedos, such as sea ice. Our results demonstrate that host model uncertainties are an important component of aerosol forcing uncertainty that require further attention. However, uncertainties in aerosol radiative effects also include short-term and long-term feedback processes that will be systematically explored in future intercomparison studies. Here we will present an overview of the proposals for discussion and results from early scoping studies.

Answering the Call for Model-Relevant Observations of Aerosols and Clouds

NASA Technical Reports Server (NTRS)

Redemann, J.; Shinozuka, Y.; Kacenelenbogen, M.; Segal-Rozenhaimer, M.; LeBlanc, S.; Vaughan, M.; Stier, P.; Schutgens, N.

2017-01-01

We describe a technique for combining multiple A-Train aerosol data sets, namely MODIS spectral AOD (aerosol optical depth), OMI AAOD (absorption aerosol optical depth) and CALIOP aerosol backscatter retrievals (hereafter referred to as MOC retrievals) to estimate full spectral sets of aerosol radiative properties, and ultimately to calculate the 3-D distribution of direct aerosol radiative effects (DARE). We present MOC results using almost two years of data collected in 2007 and 2008, and show comparisons of the aerosol radiative property estimates to collocated AERONET retrievals. We compare the spatio-temporal distribution of the MOC retrievals and MOC-based calculations of seasonal clear-sky DARE to values derived from four models that participated in the Phase II AeroCom model intercomparison initiative. Comparisons of seasonal aerosol property to AeroCom Phase II results show generally good agreement best agreement with forcing results at TOA is found with GMI-MerraV3.We discuss the challenges in making observations that really address deficiencies in models, with some of the more relevant aspects being representativeness of the observations for climatological states, and whether a given model-measurement difference addresses a sampling or a model error.

Towards a Multi-Mission, Airborne Science Data System Environment

NASA Astrophysics Data System (ADS)

Crichton, D. J.; Hardman, S.; Law, E.; Freeborn, D.; Kay-Im, E.; Lau, G.; Oswald, J.

2011-12-01

NASA earth science instruments are increasingly relying on airborne missions. However, traditionally, there has been limited common infrastructure support available to principal investigators in the area of science data systems. As a result, each investigator has been required to develop their own computing infrastructures for the science data system. Typically there is little software reuse and many projects lack sufficient resources to provide a robust infrastructure to capture, process, distribute and archive the observations acquired from airborne flights. At NASA's Jet Propulsion Laboratory (JPL), we have been developing a multi-mission data system infrastructure for airborne instruments called the Airborne Cloud Computing Environment (ACCE). ACCE encompasses the end-to-end lifecycle covering planning, provisioning of data system capabilities, and support for scientific analysis in order to improve the quality, cost effectiveness, and capabilities to enable new scientific discovery and research in earth observation. This includes improving data system interoperability across each instrument. A principal characteristic is being able to provide an agile infrastructure that is architected to allow for a variety of configurations of the infrastructure from locally installed compute and storage services to provisioning those services via the "cloud" from cloud computer vendors such as Amazon.com. Investigators often have different needs that require a flexible configuration. The data system infrastructure is built on the Apache's Object Oriented Data Technology (OODT) suite of components which has been used for a number of spaceborne missions and provides a rich set of open source software components and services for constructing science processing and data management systems. In 2010, a partnership was formed between the ACCE team and the Carbon in Arctic Reservoirs Vulnerability Experiment (CARVE) mission to support the data processing and data management needs. A principal goal is to provide support for the Fourier Transform Spectrometer (FTS) instrument which will produce over 700,000 soundings over the life of their three-year mission. The cost to purchase and operate a cluster-based system in order to generate Level 2 Full Physics products from this data was prohibitive. Through an evaluation of cloud computing solutions, Amazon's Elastic Compute Cloud (EC2) was selected for the CARVE deployment. As the ACCE infrastructure is developed and extended to form an infrastructure for airborne missions, the experience of working with CARVE has provided a number of lessons learned and has proven to be important in reinforcing the unique aspects of airborne missions and the importance of the ACCE infrastructure in developing a cost effective, flexible multi-mission capability that leverages emerging capabilities in cloud computing, workflow management, and distributed computing.

What controls the vertical distribution of aerosol? Relationships between process sensitivity in HadGEM3–UKCA and inter-model variation from AeroCom Phase II

DOE PAGES

Kipling, Zak; Stier, Philip; Johnson, Colin E.; ...

2016-02-26

The vertical profile of aerosol is important for its radiative effects, but weakly constrained by observations on the global scale, and highly variable among different models. To investigate the controlling factors in one particular model, we investigate the effects of individual processes in HadGEM3–UKCA and compare the resulting diversity of aerosol vertical profiles with the inter-model diversity from the AeroCom Phase II control experiment. In this way we show that (in this model at least) the vertical profile is controlled by a relatively small number of processes, although these vary among aerosol components and particle sizes. We also show that sufficientlymore » coarse variations in these processes can produce a similar diversity to that among different models in terms of the global-mean profile and, to a lesser extent, the zonal-mean vertical position. However, there are features of certain models' profiles that cannot be reproduced, suggesting the influence of further structural differences between models. In HadGEM3–UKCA, convective transport is found to be very important in controlling the vertical profile of all aerosol components by mass. In-cloud scavenging is very important for all except mineral dust. Growth by condensation is important for sulfate and carbonaceous aerosol (along with aqueous oxidation for the former and ageing by soluble material for the latter). The vertical extent of biomass-burning emissions into the free troposphere is also important for the profile of carbonaceous aerosol. Boundary-layer mixing plays a dominant role for sea salt and mineral dust, which are emitted only from the surface. Dry deposition and below-cloud scavenging are important for the profile of mineral dust only. In this model, the microphysical processes of nucleation, condensation and coagulation dominate the vertical profile of the smallest particles by number (e.g. total CN > 3 nm), while the profiles of larger particles (e.g. CN > 100 nm) are controlled by the same processes as the component mass profiles, plus the size distribution of primary emissions. Here, we also show that the processes that affect the AOD-normalised radiative forcing in the model are predominantly those that affect the vertical mass distribution, in particular convective transport, in-cloud scavenging, aqueous oxidation, ageing and the vertical extent of biomass-burning emissions.« less

Survey of MapReduce frame operation in bioinformatics.

PubMed

Zou, Quan; Li, Xu-Bin; Jiang, Wen-Rui; Lin, Zi-Yu; Li, Gui-Lin; Chen, Ke

2014-07-01

Bioinformatics is challenged by the fact that traditional analysis tools have difficulty in processing large-scale data from high-throughput sequencing. The open source Apache Hadoop project, which adopts the MapReduce framework and a distributed file system, has recently given bioinformatics researchers an opportunity to achieve scalable, efficient and reliable computing performance on Linux clusters and on cloud computing services. In this article, we present MapReduce frame-based applications that can be employed in the next-generation sequencing and other biological domains. In addition, we discuss the challenges faced by this field as well as the future works on parallel computing in bioinformatics. © The Author 2013. Published by Oxford University Press. For Permissions, please email: journals.permissions@oup.com.

Host model uncertainties in aerosol radiative forcing estimates: results from the AeroCom prescribed intercomparison study

NASA Astrophysics Data System (ADS)

Stier, P.; Schutgens, N. A. J.; Bian, H.; Boucher, O.; Chin, M.; Ghan, S.; Huneeus, N.; Kinne, S.; Lin, G.; Myhre, G.; Penner, J. E.; Randles, C.; Samset, B.; Schulz, M.; Yu, H.; Zhou, C.

2012-09-01

Simulated multi-model "diversity" in aerosol direct radiative forcing estimates is often perceived as measure of aerosol uncertainty. However, current models used for aerosol radiative forcing calculations vary considerably in model components relevant for forcing calculations and the associated "host-model uncertainties" are generally convoluted with the actual aerosol uncertainty. In this AeroCom Prescribed intercomparison study we systematically isolate and quantify host model uncertainties on aerosol forcing experiments through prescription of identical aerosol radiative properties in nine participating models. Even with prescribed aerosol radiative properties, simulated clear-sky and all-sky aerosol radiative forcings show significant diversity. For a purely scattering case with globally constant optical depth of 0.2, the global-mean all-sky top-of-atmosphere radiative forcing is -4.51 W m-2 and the inter-model standard deviation is 0.70 W m-2, corresponding to a relative standard deviation of 15%. For a case with partially absorbing aerosol with an aerosol optical depth of 0.2 and single scattering albedo of 0.8, the forcing changes to 1.26 W m-2, and the standard deviation increases to 1.21 W m-2, corresponding to a significant relative standard deviation of 96%. However, the top-of-atmosphere forcing variability owing to absorption is low, with relative standard deviations of 9% clear-sky and 12% all-sky. Scaling the forcing standard deviation for a purely scattering case to match the sulfate radiative forcing in the AeroCom Direct Effect experiment, demonstrates that host model uncertainties could explain about half of the overall sulfate forcing diversity of 0.13 W m-2 in the AeroCom Direct Radiative Effect experiment. Host model errors in aerosol radiative forcing are largest in regions of uncertain host model components, such as stratocumulus cloud decks or areas with poorly constrained surface albedos, such as sea ice. Our results demonstrate that host model uncertainties are an important component of aerosol forcing uncertainty that require further attention.

ABOUT the phenomenon produced by the successive jumps of the peripheric electrons, at the absorbtion of the intense photon beam by the metal

NASA Astrophysics Data System (ADS)

Isarie, Claudiu I.; Oprean, Constantin; Marginean, Ion; Nemes, Toderita; Isarie, Ilie V.; Bokor, Corina; Itu, Sorin

2011-03-01

When a photon beam is in impact with a metal, the peripheric electrons which belong to the bombarded material are made jumps, and in the same time, new photons are absorbed by electrons which had not time to come back to the fundamental levels. At a high level concentration of the radiant energy, a peripheral electron, could sequentially absorb more photons and could realize energetic jumps in succesive phase, equivalent with some photons of high energy which have wave-lenght smaller than the incidental photons. After some succesive photon absorbtion of the same electron, in the interval in which it is not activated by new photons, the electron comes back to the fundamental level and delivers the accumulated energy, in photons of higher energy, which have a lower energy than the incident beam. Comming back to the fundamental level, the electrons disturb the electronic cloud of the atom or ion they belong. After a huge number of such phenomenon the electronic cloud which is succesivelly disturbed, produces an oscillation which risez the temperature of the nucleus. The authors have studied the conditions which generated the rise of temperature and multiple radiations at the place where the photons bombard the metal.

GT-WGS: an efficient and economic tool for large-scale WGS analyses based on the AWS cloud service.

PubMed

Wang, Yiqi; Li, Gen; Ma, Mark; He, Fazhong; Song, Zhuo; Zhang, Wei; Wu, Chengkun

2018-01-19

Whole-genome sequencing (WGS) plays an increasingly important role in clinical practice and public health. Due to the big data size, WGS data analysis is usually compute-intensive and IO-intensive. Currently it usually takes 30 to 40 h to finish a 50× WGS analysis task, which is far from the ideal speed required by the industry. Furthermore, the high-end infrastructure required by WGS computing is costly in terms of time and money. In this paper, we aim to improve the time efficiency of WGS analysis and minimize the cost by elastic cloud computing. We developed a distributed system, GT-WGS, for large-scale WGS analyses utilizing the Amazon Web Services (AWS). Our system won the first prize on the Wind and Cloud challenge held by Genomics and Cloud Technology Alliance conference (GCTA) committee. The system makes full use of the dynamic pricing mechanism of AWS. We evaluate the performance of GT-WGS with a 55× WGS dataset (400GB fastq) provided by the GCTA 2017 competition. In the best case, it only took 18.4 min to finish the analysis and the AWS cost of the whole process is only 16.5 US dollars. The accuracy of GT-WGS is 99.9% consistent with that of the Genome Analysis Toolkit (GATK) best practice. We also evaluated the performance of GT-WGS performance on a real-world dataset provided by the XiangYa hospital, which consists of 5× whole-genome dataset with 500 samples, and on average GT-WGS managed to finish one 5× WGS analysis task in 2.4 min at a cost of $3.6. WGS is already playing an important role in guiding therapeutic intervention. However, its application is limited by the time cost and computing cost. GT-WGS excelled as an efficient and affordable WGS analyses tool to address this problem. The demo video and supplementary materials of GT-WGS can be accessed at https://github.com/Genetalks/wgs_analysis_demo .

Aerosol Absorption and Radiative Forcing

NASA Technical Reports Server (NTRS)

Stier, Philip; Seinfeld, J. H.; Kinne, Stefan; Boucher, Olivier

2007-01-01

We present a comprehensive examination of aerosol absorption with a focus on evaluating the sensitivity of the global distribution of aerosol absorption to key uncertainties in the process representation. For this purpose we extended the comprehensive aerosol-climate model ECHAM5-HAM by effective medium approximations for the calculation of aerosol effective refractive indices, updated black carbon refractive indices, new cloud radiative properties considering the effect of aerosol inclusions, as well as by modules for the calculation of long-wave aerosol radiative properties and instantaneous aerosol forcing. The evaluation of the simulated aerosol absorption optical depth with the AERONET sun-photometer network shows a good agreement in the large scale global patterns. On a regional basis it becomes evident that the update of the BC refractive indices to Bond and Bergstrom (2006) significantly improves the previous underestimation of the aerosol absorption optical depth. In the global annual-mean, absorption acts to reduce the shortwave anthropogenic aerosol top-of-atmosphere (TOA) radiative forcing clear-sky from -0.79 to -0.53 W m(sup -2) (33%) and all-sky from -0.47 to -0.13W m(sup -2 (72%). Our results confirm that basic assumptions about the BC refractive index play a key role for aerosol absorption and radiative forcing. The effect of the usage of more accurate effective medium approximations is comparably small. We demonstrate that the diversity in the AeroCom land-surface albedo fields contributes to the uncertainty in the simulated anthropogenic aerosol radiative forcings: the usage of an upper versus lower bound of the AeroCom land albedos introduces a global annual-mean TOA forcing range of 0.19W m(sup -2) (36%) clear-sky and of 0.12W m(sup -2) (92%) all-sky. The consideration of black carbon inclusions on cloud radiative properties results in a small global annual-mean all-sky absorption of 0.05W m(sup -2) and a positive TOA forcing perturbation of 0.02W m(sup -2). The long-wave aerosol radiative effects are small for anthropogenic aerosols but become of relevance for the larger natural dust and sea-salt aerosols.

Impact of geoengineering on cirrus clouds

NASA Astrophysics Data System (ADS)

Cirisan, Ana; Spichtinger, Peter; Weisenstein, Debra; Lohmann, Ulrike; Wernli, Heini; Peter, Thomas

2010-05-01

Inspite of the framework convention agreement, climate warming is still an actual and very important issue society has to deal with. This has motivated some scientist to start thinking about implementation of artificial methods that could change the climate and weather patterns in order to stop or reverse the global warming effects. Nowadays, there is a consortium of politicians, scientists and engineers interested in evaluating different geoengineering schemes as a way to mitigate global warming, discount rates, and risk aversion (Polborn S. and Tintelnot F., 2009). The geoengineering proposal attracting the most attention and having considerably lower expected deployment costs than conventional emissions abatement approaches (Nordhaus, 2007) is stratospheric aerosol injection. This method, proposed by Budyko (1977) and Crutzen (2006), relies on the fact that large amounts of sulphur aerosols injected into the lower stratosphere enhance the Earth's albedo and lead to cooling of the globe. This proposal is currently discussed in the climate community and possible side effects are investigated. However, the investigations concentrate almost exclusively on the impact on chemistry and stratospheric circulation, whereas the impact on cirrus clouds in the underlying tropopause and upper troposphere region was not taken into account up to now. In this contribution we investigated the impact of artificially produced sulphate aerosol concentrations, modeled with the AER 2D aerosol model (Weisenstein et al., 2007), on the formation and evolution of cirrus clouds in the mid-latitudes. For large injections of SO2 some sulphate aerosol particles grow to large sizes that they can sediment to lower altitudes and eventually reach the troposphere, where they can influence ice crystal formation. Investigations are carried out using a bulk microphysical box model (Spichtinger and Gierens, 2009, Spichtinger and Cziczo, 2009), concentrating on moderate constant updrafts with different background aerosol mass and number concentrations in response to geoengineering measures. In order to obtain qualitative and quantitative estimations of troposphere-stratosphere air mixing (intrusions, tropopause folds etc.) trajectory studies are done using ECMWF data. The results of this conceptual study suggest that an enhancement of sulphuric acid in the tropopause and upper troposphere region may impact the ice crystal number concentrations in cirrus clouds formed via homogeneous nucleation. The global impact can not be estimated, but on the local level, this could lead to change of cloud lifetime and thickness. It would further influence the albedo and radiative properties of cirrus clouds, i.e. modifying the net warming impact of cirrus clouds. Budyko, M.I. (1977), Global Ecology. Mysl, Moscow, 327 pp. (in Russian). Crutzen, P.J. (2006), Albedo enhancement by stratospheric sulfur injections: A contribution to resolve a policy dilemma?, Climate Change, 77(3-4), 211-219. Nordhaus, W.D. (2007), A Question of Balance: Economic Modeling of Global Warming, Yale University Press, 2007. Polborn, S. and Tintelnot, F. (2009), How Geoengineering May Encourage Carbon Dioxide Abatement (June 2, 2009). Available at SSRN: http://ssrn.com/abstract=1413106 Spichtinger, P. and Gierens, K. (2009), Modelling of cirrus clouds - Part 1a: Model description and validation, Atmos. Chem. Phys., 9, 685-706. Spichtinger, P. and Cziczo, D. (2009), Impact of heterogeneous ice nuclei on homogeneous freezing events, J. Geophys. Res., in revision. Weisenstein, D.K., Penner, J.E., Herzog, M., and Liu, X., (2007), Global 2-D intercomparison of sectional and modal aerosol modules, Atmos. Chem. Phys., 7(9), 2339-2355.

Xyce Parallel Electronic Simulator Users Guide Version 6.2.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Keiter, Eric R.; Mei, Ting; Russo, Thomas V.

This manual describes the use of the Xyce Parallel Electronic Simulator. Xyce has been de- signed as a SPICE-compatible, high-performance analog circuit simulator, and has been written to support the simulation needs of the Sandia National Laboratories electrical designers. This development has focused on improving capability over the current state-of-the-art in the following areas: Capability to solve extremely large circuit problems by supporting large-scale parallel com- puting platforms (up to thousands of processors). This includes support for most popular parallel and serial computers. A differential-algebraic-equation (DAE) formulation, which better isolates the device model package from solver algorithms. This allows onemore » to develop new types of analysis without requiring the implementation of analysis-specific device models. Device models that are specifically tailored to meet Sandia's needs, including some radiation- aware devices (for Sandia users only). Object-oriented code design and implementation using modern coding practices. Xyce is a parallel code in the most general sense of the phrase -- a message passing parallel implementation -- which allows it to run efficiently a wide range of computing platforms. These include serial, shared-memory and distributed-memory parallel platforms. Attention has been paid to the specific nature of circuit-simulation problems to ensure that optimal parallel efficiency is achieved as the number of processors grows. Trademarks The information herein is subject to change without notice. Copyright c 2002-2014 Sandia Corporation. All rights reserved. Xyce TM Electronic Simulator and Xyce TM are trademarks of Sandia Corporation. Portions of the Xyce TM code are: Copyright c 2002, The Regents of the University of California. Produced at the Lawrence Livermore National Laboratory. Written by Alan Hindmarsh, Allan Taylor, Radu Serban. UCRL-CODE-2002-59 All rights reserved. Orcad, Orcad Capture, PSpice and Probe are registered trademarks of Cadence Design Systems, Inc. Microsoft, Windows and Windows 7 are registered trademarks of Microsoft Corporation. Medici, DaVinci and Taurus are registered trademarks of Synopsys Corporation. Amtec and TecPlot are trademarks of Amtec Engineering, Inc. Xyce 's expression library is based on that inside Spice 3F5 developed by the EECS Department at the University of California. The EKV3 MOSFET model was developed by the EKV Team of the Electronics Laboratory-TUC of the Technical University of Crete. All other trademarks are property of their respective owners. Contacts Bug Reports (Sandia only) http://joseki.sandia.gov/bugzilla http://charleston.sandia.gov/bugzilla World Wide Web http://xyce.sandia.gov http://charleston.sandia.gov/xyce (Sandia only) Email xyce@sandia.gov (outside Sandia) xyce-sandia@sandia.gov (Sandia only)« less

Xyce Parallel Electronic Simulator Users Guide Version 6.4

DOE Office of Scientific and Technical Information (OSTI.GOV)

Keiter, Eric R.; Mei, Ting; Russo, Thomas V.

This manual describes the use of the Xyce Parallel Electronic Simulator. Xyce has been de- signed as a SPICE-compatible, high-performance analog circuit simulator, and has been written to support the simulation needs of the Sandia National Laboratories electrical designers. This development has focused on improving capability over the current state-of-the-art in the following areas: Capability to solve extremely large circuit problems by supporting large-scale parallel com- puting platforms (up to thousands of processors). This includes support for most popular parallel and serial computers. A differential-algebraic-equation (DAE) formulation, which better isolates the device model package from solver algorithms. This allows onemore » to develop new types of analysis without requiring the implementation of analysis-specific device models. Device models that are specifically tailored to meet Sandia's needs, including some radiation- aware devices (for Sandia users only). Object-oriented code design and implementation using modern coding practices. Xyce is a parallel code in the most general sense of the phrase -- a message passing parallel implementation -- which allows it to run efficiently a wide range of computing platforms. These include serial, shared-memory and distributed-memory parallel platforms. Attention has been paid to the specific nature of circuit-simulation problems to ensure that optimal parallel efficiency is achieved as the number of processors grows. Trademarks The information herein is subject to change without notice. Copyright c 2002-2015 Sandia Corporation. All rights reserved. Xyce TM Electronic Simulator and Xyce TM are trademarks of Sandia Corporation. Portions of the Xyce TM code are: Copyright c 2002, The Regents of the University of California. Produced at the Lawrence Livermore National Laboratory. Written by Alan Hindmarsh, Allan Taylor, Radu Serban. UCRL-CODE-2002-59 All rights reserved. Orcad, Orcad Capture, PSpice and Probe are registered trademarks of Cadence Design Systems, Inc. Microsoft, Windows and Windows 7 are registered trademarks of Microsoft Corporation. Medici, DaVinci and Taurus are registered trademarks of Synopsys Corporation. Amtec and TecPlot are trademarks of Amtec Engineering, Inc. Xyce 's expression library is based on that inside Spice 3F5 developed by the EECS Department at the University of California. The EKV3 MOSFET model was developed by the EKV Team of the Electronics Laboratory-TUC of the Technical University of Crete. All other trademarks are property of their respective owners. Contacts Bug Reports (Sandia only) http://joseki.sandia.gov/bugzilla http://charleston.sandia.gov/bugzilla World Wide Web http://xyce.sandia.gov http://charleston.sandia.gov/xyce (Sandia only) Email xyce@sandia.gov (outside Sandia) xyce-sandia@sandia.gov (Sandia only)« less

cl-dash: rapid configuration and deployment of Hadoop clusters for bioinformatics research in the cloud.

PubMed

Hodor, Paul; Chawla, Amandeep; Clark, Andrew; Neal, Lauren

2016-01-15

: One of the solutions proposed for addressing the challenge of the overwhelming abundance of genomic sequence and other biological data is the use of the Hadoop computing framework. Appropriate tools are needed to set up computational environments that facilitate research of novel bioinformatics methodology using Hadoop. Here, we present cl-dash, a complete starter kit for setting up such an environment. Configuring and deploying new Hadoop clusters can be done in minutes. Use of Amazon Web Services ensures no initial investment and minimal operation costs. Two sample bioinformatics applications help the researcher understand and learn the principles of implementing an algorithm using the MapReduce programming pattern. Source code is available at https://bitbucket.org/booz-allen-sci-comp-team/cl-dash.git. hodor_paul@bah.com. © The Author 2015. Published by Oxford University Press.

BioContainers: an open-source and community-driven framework for software standardization.

PubMed

da Veiga Leprevost, Felipe; Grüning, Björn A; Alves Aflitos, Saulo; Röst, Hannes L; Uszkoreit, Julian; Barsnes, Harald; Vaudel, Marc; Moreno, Pablo; Gatto, Laurent; Weber, Jonas; Bai, Mingze; Jimenez, Rafael C; Sachsenberg, Timo; Pfeuffer, Julianus; Vera Alvarez, Roberto; Griss, Johannes; Nesvizhskii, Alexey I; Perez-Riverol, Yasset

2017-08-15

BioContainers (biocontainers.pro) is an open-source and community-driven framework which provides platform independent executable environments for bioinformatics software. BioContainers allows labs of all sizes to easily install bioinformatics software, maintain multiple versions of the same software and combine tools into powerful analysis pipelines. BioContainers is based on popular open-source projects Docker and rkt frameworks, that allow software to be installed and executed under an isolated and controlled environment. Also, it provides infrastructure and basic guidelines to create, manage and distribute bioinformatics containers with a special focus on omics technologies. These containers can be integrated into more comprehensive bioinformatics pipelines and different architectures (local desktop, cloud environments or HPC clusters). The software is freely available at github.com/BioContainers/. yperez@ebi.ac.uk. © The Author(s) 2017. Published by Oxford University Press.

BioContainers: an open-source and community-driven framework for software standardization

PubMed Central

da Veiga Leprevost, Felipe; Grüning, Björn A.; Alves Aflitos, Saulo; Röst, Hannes L.; Uszkoreit, Julian; Barsnes, Harald; Vaudel, Marc; Moreno, Pablo; Gatto, Laurent; Weber, Jonas; Bai, Mingze; Jimenez, Rafael C.; Sachsenberg, Timo; Pfeuffer, Julianus; Vera Alvarez, Roberto; Griss, Johannes; Nesvizhskii, Alexey I.; Perez-Riverol, Yasset

2017-01-01

Abstract Motivation BioContainers (biocontainers.pro) is an open-source and community-driven framework which provides platform independent executable environments for bioinformatics software. BioContainers allows labs of all sizes to easily install bioinformatics software, maintain multiple versions of the same software and combine tools into powerful analysis pipelines. BioContainers is based on popular open-source projects Docker and rkt frameworks, that allow software to be installed and executed under an isolated and controlled environment. Also, it provides infrastructure and basic guidelines to create, manage and distribute bioinformatics containers with a special focus on omics technologies. These containers can be integrated into more comprehensive bioinformatics pipelines and different architectures (local desktop, cloud environments or HPC clusters). Availability and Implementation The software is freely available at github.com/BioContainers/. Contact yperez@ebi.ac.uk PMID:28379341

Research and the health of indigenous populations in low- and middle-income countries.

PubMed

Mohindra, K S

2017-06-01

In low- and middle-income countries (LMICs)-when there are available data-a 'health divide' exists between indigenous and non-indigenous populations living in the same society. Despite the limited available evidence suggesting that indigenous populations have high levels of health needs, there is scant research on indigenous health, especially in Africa, China and South Asia. Pursuing research, however, is clouded by the prior negative experiences that indigenous populations have had with researchers. In this paper, we describe the current evidence base on indigenous health in LMICs, propose practical strategies for undertaking future research, and conclude by describing how global health researchers can contribute to improving the health of indigenous populations. © The Author 2015. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

cl-dash: rapid configuration and deployment of Hadoop clusters for bioinformatics research in the cloud

PubMed Central

Hodor, Paul; Chawla, Amandeep; Clark, Andrew; Neal, Lauren

2016-01-01

Summary: One of the solutions proposed for addressing the challenge of the overwhelming abundance of genomic sequence and other biological data is the use of the Hadoop computing framework. Appropriate tools are needed to set up computational environments that facilitate research of novel bioinformatics methodology using Hadoop. Here, we present cl-dash, a complete starter kit for setting up such an environment. Configuring and deploying new Hadoop clusters can be done in minutes. Use of Amazon Web Services ensures no initial investment and minimal operation costs. Two sample bioinformatics applications help the researcher understand and learn the principles of implementing an algorithm using the MapReduce programming pattern. Availability and implementation: Source code is available at https://bitbucket.org/booz-allen-sci-comp-team/cl-dash.git. Contact: hodor_paul@bah.com PMID:26428290

Host model uncertainties in aerosol radiative forcing estimates: results from the AeroCom Prescribed intercomparison study

NASA Astrophysics Data System (ADS)

Stier, P.; Schutgens, N. A. J.; Bellouin, N.; Bian, H.; Boucher, O.; Chin, M.; Ghan, S.; Huneeus, N.; Kinne, S.; Lin, G.; Ma, X.; Myhre, G.; Penner, J. E.; Randles, C. A.; Samset, B.; Schulz, M.; Takemura, T.; Yu, F.; Yu, H.; Zhou, C.

2013-03-01

Simulated multi-model "diversity" in aerosol direct radiative forcing estimates is often perceived as a measure of aerosol uncertainty. However, current models used for aerosol radiative forcing calculations vary considerably in model components relevant for forcing calculations and the associated "host-model uncertainties" are generally convoluted with the actual aerosol uncertainty. In this AeroCom Prescribed intercomparison study we systematically isolate and quantify host model uncertainties on aerosol forcing experiments through prescription of identical aerosol radiative properties in twelve participating models. Even with prescribed aerosol radiative properties, simulated clear-sky and all-sky aerosol radiative forcings show significant diversity. For a purely scattering case with globally constant optical depth of 0.2, the global-mean all-sky top-of-atmosphere radiative forcing is -4.47 Wm-2 and the inter-model standard deviation is 0.55 Wm-2, corresponding to a relative standard deviation of 12%. For a case with partially absorbing aerosol with an aerosol optical depth of 0.2 and single scattering albedo of 0.8, the forcing changes to 1.04 Wm-2, and the standard deviation increases to 1.01 W-2, corresponding to a significant relative standard deviation of 97%. However, the top-of-atmosphere forcing variability owing to absorption (subtracting the scattering case from the case with scattering and absorption) is low, with absolute (relative) standard deviations of 0.45 Wm-2 (8%) clear-sky and 0.62 Wm-2 (11%) all-sky. Scaling the forcing standard deviation for a purely scattering case to match the sulfate radiative forcing in the AeroCom Direct Effect experiment demonstrates that host model uncertainties could explain about 36% of the overall sulfate forcing diversity of 0.11 Wm-2 in the AeroCom Direct Radiative Effect experiment. Host model errors in aerosol radiative forcing are largest in regions of uncertain host model components, such as stratocumulus cloud decks or areas with poorly constrained surface albedos, such as sea ice. Our results demonstrate that host model uncertainties are an important component of aerosol forcing uncertainty that require further attention.

A-Train Aerosol Observations Preliminary Comparisons with AeroCom Models and Pathways to Observationally Based All-Sky Estimates

NASA Technical Reports Server (NTRS)

Redemann, J.; Livingston, J.; Shinozuka, Y.; Kacenelenbogen, M.; Russell, P.; LeBlanc, S.; Vaughan, M.; Ferrare, R.; Hostetler, C.; Rogers, R.;

Green Lightning Channels From the Chaiten Volcano in Chile Photographed By Carlos Gutierrez May 2-3, 2008

NASA Astrophysics Data System (ADS)

Few, A. A.

2013-12-01

The two photographs containing the green lightning channels appeared on the Boston.com web site (The Big Picture, June 4, 2008). These web photographs were of limited resolution (176 Kb) making the interpretation of the green channels difficult. The agent for Gutierrez, Landov LLC, made available the two photographs as high resolution digital photographs (1.4 Mb and 1.5 Mb) that appear on the poster. Upon close examination of the green channels it is possible to exclude negative discharges or their remnants as being the source of the green channels; negative discharges require white-hot ionization processes at the leading tip of the channel. There are several examples of the white negative channels on the photographs. The green channels might be positive streamers. In thunderstorms positive streamers propagate within the negative charged region of the cloud collecting electrons, which are supplied to the connected negative discharge channel, hence they are not observed in thunderstorms. They can be detected and mapped inside the thunderstorm from observations of their electromagnetic radiations. Positive streamers are cooler than negative discharges because electrons are convergent on the leading tip of the positive streamer maintaining its conductivity. For the negative leading tips the electrons are divergent and new electrons must be generated by hot ionization processes. A close examination reveals that the green channels track the edge of the ash cloud, which if a positive streamer would indicate a negative surface charge on the cloud. Most likely the green color results from excited oxygen atoms returning to the ground state and emitting a green photon. This is the process that produces the green aurora, and if this produces green lightning, it places several constraints on the conditions of the channel. The two photographs below are selected clips from the much larger photographs; these show the green lightning channels.

Environmental controls in the water use patterns of a tropical cloud forest tree species, Drimys brasiliensis (Winteraceae).

PubMed

Eller, Cleiton B; Burgess, Stephen S O; Oliveira, Rafael S

2015-04-01

Trees from tropical montane cloud forest (TMCF) display very dynamic patterns of water use. They are capable of downwards water transport towards the soil during leaf-wetting events, likely a consequence of foliar water uptake (FWU), as well as high rates of night-time transpiration (Enight) during drier nights. These two processes might represent important sources of water losses and gains to the plant, but little is known about the environmental factors controlling these water fluxes. We evaluated how contrasting atmospheric and soil water conditions control diurnal, nocturnal and seasonal dynamics of sap flow in Drimys brasiliensis (Miers), a common Neotropical cloud forest species. We monitored the seasonal variation of soil water content, micrometeorological conditions and sap flow of D. brasiliensis trees in the field during wet and dry seasons. We also conducted a greenhouse experiment exposing D. brasiliensis saplings under contrasting soil water conditions to deuterium-labelled fog water. We found that during the night D. brasiliensis possesses heightened stomatal sensitivity to soil drought and vapour pressure deficit, which reduces night-time water loss. Leaf-wetting events had a strong suppressive effect on tree transpiration (E). Foliar water uptake increased in magnitude with drier soil and during longer leaf-wetting events. The difference between diurnal and nocturnal stomatal behaviour in D. brasiliensis could be attributed to an optimization of carbon gain when leaves are dry, as well as minimization of nocturnal water loss. The leaf-wetting events on the other hand seem important to D. brasiliensis water balance, especially during soil droughts, both by suppressing tree transpiration (E) and as a small additional water supply through FWU. Our results suggest that decreases in leaf-wetting events in TMCF might increase D. brasiliensis water loss and decrease its water gains, which could compromise its ecophysiological performance and survival during dry periods. © The Author 2015. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Modeling the Impact of Space Suit Components and Anthropometry on the Center of Mass of a Seated Crewmember

NASA Technical Reports Server (NTRS)

Rajulu, Sudhakar; Blackledge, Christopher; Ferrer, Mike; Margerum, Sarah

2009-01-01

The designers of the Orion Crew Exploration Vehicle (CEV) utilize an intensive simulation program in order to predict the launch and landing characteristics of the Crew Impact Attenuation System (CIAS). The CIAS is the energy absorbing strut concept that dampens loads to levels sustainable by the crew during landing and consists of the crew module seat pallet that accommodates four to six seated astronauts. An important parameter required for proper dynamic modeling of the CIAS is knowledge of the suited center of mass (COM) variations within the crew population. Significant center of mass variations across suited crew configurations would amplify the inertial effects of the pallet and potentially create unacceptable crew loading during launch and landing. Established suited, whole-body, and posture-based mass properties were not available due to the uncertainty of the final CEV seat posture and suit hardware configurations. While unsuited segmental center of mass values can be obtained via regression equations from previous studies, building them into a model that was posture dependent with custom anthropometry and integrated suit components proved cumbersome and time consuming. Therefore, the objective of this study was to quantify the effects of posture, suit components, and the expected range of anthropometry on the center of mass of a seated individual. Several elements are required for the COM calculation of a suited human in a seated position: anthropometry; body segment mass; suit component mass; suit component location relative to the body; and joint angles defining the seated posture. Anthropometry and body segment masses used in this study were taken from a selection of three-dimensional human body models, called boundary manikins, which were developed in a previous project. These boundary manikins represent the critical anthropometric dimension extremes for the anticipated astronaut population. Six male manikins and 6 female manikins, representing a subset of the possible maximum and minimum sized crewmembers, were segmented using point-cloud software to create 17 major body segments. The general approach used to calculate the human mass properties was to utilize center of volume outputs from the software for each body segment and apply a homogeneous density function to determine segment mass 3-D coordinates. Suit components, based on the current consensus regarding predicted suit configuration values, were treated as point masses and were positioned using vector mathematics along the body segments based on anthropometry and COM position. A custom MATLAB script then articulates the body segment and suit positions into a selected seated configuration, using joint angles that characterize a standard seated position and a CEV specific seated position. Additional MATLAB(r) scripts are finally used to calculate the composite COM positions in 3-D space for all 12 manikins in both suited and unsuited conditions for both seated configurations. The analysis focused on two aspects: (1) to quantify how much the whole body COM varied from the smallest to largest subject and (2) the impacts of the suit components on the overall COM in each seat configuration. The location across all boundary manikins of the anterior- posterior COM varied by approximately 7cm, the vertical COM varied by approximately 9-10cm, and the mediolateral COM varied by approximately 1.2 cm from the midline sagittal plane for both seat configurations. This variation was surprisingly large given the relative proportionality of the mass distribution of the human body. The suit components caused an anterior shift of the total COM by approximately 2 cm and a shift to the right along the mediolateral axis of 0.4 cm for both seat configurations. When the seat configuration is in the standard posture, the suited vertical COM shifts inferiorly by up to 1 cm whereas in the CEV posture the vertical COM has no appreciable change. These general differences were due the high proportion of suit mass located in the boots and lower legs and their corresponding distance from the body COM as well as the prevalence of suit components on the right side of the body.

Exploring the Cloud Icy Early Mars Hypothesis Through Geochemistry and Mineralogy

NASA Technical Reports Server (NTRS)

Niles, P. B.; Michalski, J. R.

2015-01-01

While ancient fluvial channels have long been considered strong evidence for early surface water on Mars, many aspects of the fluvial morphology and occurrence suggest that they formed in relatively water limited conditions (com-pared to Earth) and that climatic excursions allowing for surface water might have been short-lived. Updated results mapping valley networks at higher resolution have changed this paradigm, showing that channels are much more abundant and wide-spread, and of higher order than was previously recognized, suggesting that Mars had a dense enough atmosphere and warm enough climate to allow channel formation up to 3.6-3.8 Ga. This revised view of the ancient martian climate might be broadly consistent with a climate history of Mars devised from infrared remote sensing of surface minerals, suggesting that widespread clay minerals formed in the Noachian, giving way to a sulfur-dominated surface weathering system by approx. 3.7 Ga.

Whatever Happened to Formal Methods for Security?

PubMed

Voas, J; Schaffer, K

2016-08-01

We asked 7 experts 7 questions to find out what has occurred recently in terms of applying formal methods (FM) to security-centric, cyber problems. We are continually reminded of the 1996 paper by Tony Hoare "How did Software Get So Reliable Without Proof?" [1] In that vein, how did we get so insecure with proof? Given daily press announcements concerning new malware, data breaches, and privacy loss, is FM still relevant or was it ever? Our experts answered with unique personal insights. We were curious as to whether this successful methodology in "safety-critical" has succeeded as well for today's "build it, hack it, patch it" mindset. Our experts were John McLean (Naval Research Labs), Paul Black (National Institute of Standards and Technology), Karl Levitt (University of California at Davis), Joseph Williams (CloudEconomist.Com), Connie Heitmeyer (Naval Research Labs), Eugene Spafford (Purdue University), and Joseph Kiniry (Galois, Inc.). The questions and responses follow.

Epic Filament Eruption from the Sun

NASA Image and Video Library

2017-12-08

NASA image captured December 6, 2010 To view a video of this event go here: www.flickr.com/photos/gsfc/5258354738 A very long solar filament that had been snaking around the Sun erupted (Dec. 6, 2010) with a flourish. STEREO (Behind) caught the action in dramatic detail in extreme ultraviolet light of Helium. It had been almost a million km long (about half a solar radius) and a prominent feature on the Sun visible over two weeks earlier before it rotated out of view. Filaments, elongated clouds of cooler gases suspended above the Sun by magnetic forces, are rather unstable and often break away from the Sun. Credit: NASA/GSFC/SOHO NASA Goddard Space Flight Center enables NASA’s mission through four scientific endeavors: Earth Science, Heliophysics, Solar System Exploration, and Astrophysics. Goddard plays a leading role in NASA’s accomplishments by contributing compelling scientific knowledge to advance the Agency’s mission. Follow us on Twitter Join us on Facebook

GeoSymbio: a hybrid, cloud-based web application of global geospatial bioinformatics and ecoinformatics for Symbiodinium-host symbioses.

PubMed

Franklin, Erik C; Stat, Michael; Pochon, Xavier; Putnam, Hollie M; Gates, Ruth D

2012-03-01

The genus Symbiodinium encompasses a group of unicellular, photosynthetic dinoflagellates that are found free living or in hospite with a wide range of marine invertebrate hosts including scleractinian corals. We present GeoSymbio, a hybrid web application that provides an online, easy to use and freely accessible interface for users to discover, explore and utilize global geospatial bioinformatic and ecoinformatic data on Symbiodinium-host symbioses. The novelty of this application lies in the combination of a variety of query and visualization tools, including dynamic searchable maps, data tables with filter and grouping functions, and interactive charts that summarize the data. Importantly, this application is hosted remotely or 'in the cloud' using Google Apps, and therefore does not require any specialty GIS, web programming or data programming expertise from the user. The current version of the application utilizes Symbiodinium data based on the ITS2 genetic marker from PCR-based techniques, including denaturing gradient gel electrophoresis, sequencing and cloning of specimens collected during 1982-2010. All data elements of the application are also downloadable as spatial files, tables and nucleic acid sequence files in common formats for desktop analysis. The application provides a unique tool set to facilitate research on the basic biology of Symbiodinium and expedite new insights into their ecology, biogeography and evolution in the face of a changing global climate. GeoSymbio can be accessed at https://sites.google.com/site/geosymbio/. © 2011 Blackwell Publishing Ltd.

Relationships among cloud occurrence frequency, overlap, and effective thickness derived from CALIPSO and CloudSat merged cloud vertical profiles

NASA Astrophysics Data System (ADS)

Kato, Seiji; Sun-Mack, Sunny; Miller, Walter F.; Rose, Fred G.; Chen, Yan; Minnis, Patrick; Wielicki, Bruce A.

2010-01-01

A cloud frequency of occurrence matrix is generated using merged cloud vertical profiles derived from the satellite-borne Cloud-Aerosol Lidar with Orthogonal Polarization (CALIOP) and cloud profiling radar. The matrix contains vertical profiles of cloud occurrence frequency as a function of the uppermost cloud top. It is shown that the cloud fraction and uppermost cloud top vertical profiles can be related by a cloud overlap matrix when the correlation length of cloud occurrence, which is interpreted as an effective cloud thickness, is introduced. The underlying assumption in establishing the above relation is that cloud overlap approaches random overlap with increasing distance separating cloud layers and that the probability of deviating from random overlap decreases exponentially with distance. One month of Cloud-Aerosol Lidar and Infrared Pathfinder Satellite Observation (CALIPSO) and CloudSat data (July 2006) support these assumptions, although the correlation length sometimes increases with separation distance when the cloud top height is large. The data also show that the correlation length depends on cloud top hight and the maximum occurs when the cloud top height is 8 to 10 km. The cloud correlation length is equivalent to the decorrelation distance introduced by Hogan and Illingworth (2000) when cloud fractions of both layers in a two-cloud layer system are the same. The simple relationships derived in this study can be used to estimate the top-of-atmosphere irradiance difference caused by cloud fraction, uppermost cloud top, and cloud thickness vertical profile differences.

Exploring Molecular Complexity in the Interstellar Medium with Alma

NASA Astrophysics Data System (ADS)

Belloche, Arnaud

2017-06-01

The search for complex organic molecules (COMs) in the interstellar medium (ISM) relies heavily on the progress made in the laboratory to record and characterize the rotational spectra of these molecules. Almost 200 different molecules have been identified in the ISM so far, in particular thanks to millimeter-wavelength observations of the star-forming molecular cloud core Sgr B2(N) in the Galactic Center region. The advent of the Atacama Large Millimeter/submillimeter Array (ALMA) has recently opened a new door to explore the molecular complexity of the ISM. Thanks to its high angular resolution, the spectral confusion of star-forming cores can be reduced, and its tremendous sensitivity allows astronomers to detect molecules of low abundance that could not be probed by previous generations of telescopes. I will present results of the EMoCA survey conducted toward Sgr B2(N) with ALMA. The main goal of this spectral line survey is to decipher the molecular content of Sgr B2(N) in order to test the predictions of astrochemical numerical simulations and gain insight into the chemical processes at work in the ISM. I will in particular report on the tentative detection of N-methylformamide, on the deuterium fractionation of COMs, and on the detection of a branched alkyl molecule in the ISM. The latter detection has unveiled a new domain in the structures available to the chemistry of star-forming regions and established a further connection to the COMs found in meteorites. A. Belloche, A. A. Meshcheryakov, R. T. Garrod et al. 2017, A&A, in press, DOI: 10.1051/0004-6361/201629724 A. Belloche, H. S. P. Müller, R. T. Garrod, and K. M. Menten 2016, A&A, 587, A91 A. Belloche, R. T. Garrod, H. S. P. Müller, and K. M. Menten 2014, Science, 345, 1584 R. T. Garrod, A. Belloche, H. S. P. Müller, and K. M. Menten 2017, A&A, in press, DOI: 10.1051/0004-6361/201630254.

Stratocumulus Cloud Top Radiative Cooling and Cloud Base Updraft Speeds

NASA Astrophysics Data System (ADS)

Kazil, J.; Feingold, G.; Balsells, J.; Klinger, C.

2017-12-01

Cloud top radiative cooling is a primary driver of turbulence in the stratocumulus-topped marine boundary. A functional relationship between cloud top cooling and cloud base updraft speeds may therefore exist. A correlation of cloud top radiative cooling and cloud base updraft speeds has been recently identified empirically, providing a basis for satellite retrieval of cloud base updraft speeds. Such retrievals may enable analysis of aerosol-cloud interactions using satellite observations: Updraft speeds at cloud base co-determine supersaturation and therefore the activation of cloud condensation nuclei, which in turn co-determine cloud properties and precipitation formation. We use large eddy simulation and an off-line radiative transfer model to explore the relationship between cloud-top radiative cooling and cloud base updraft speeds in a marine stratocumulus cloud over the course of the diurnal cycle. We find that during daytime, at low cloud water path (CWP < 50 g m-2), cloud base updraft speeds and cloud top cooling are well-correlated, in agreement with the reported empirical relationship. During the night, in the absence of short-wave heating, CWP builds up (CWP > 50 g m-2) and long-wave emissions from cloud top saturate, while cloud base heating increases. In combination, cloud top cooling and cloud base updrafts become weakly anti-correlated. A functional relationship between cloud top cooling and cloud base updraft speed can hence be expected for stratocumulus clouds with a sufficiently low CWP and sub-saturated long-wave emissions, in particular during daytime. At higher CWPs, in particular at night, the relationship breaks down due to saturation of long-wave emissions from cloud top.

Cloud Computing Fundamentals

NASA Astrophysics Data System (ADS)

Furht, Borko

In the introductory chapter we define the concept of cloud computing and cloud services, and we introduce layers and types of cloud computing. We discuss the differences between cloud computing and cloud services. New technologies that enabled cloud computing are presented next. We also discuss cloud computing features, standards, and security issues. We introduce the key cloud computing platforms, their vendors, and their offerings. We discuss cloud computing challenges and the future of cloud computing.

CALIPSO Observations of Near-Cloud Aerosol Properties as a Function of Cloud Fraction

NASA Technical Reports Server (NTRS)

Yang, Weidong; Marshak, Alexander; Varnai, Tamas; Wood, Robert

2015-01-01

This paper uses spaceborne lidar data to study how near-cloud aerosol statistics of attenuated backscatter depend on cloud fraction. The results for a large region around the Azores show that: (1) far-from-cloud aerosol statistics are dominated by samples from scenes with lower cloud fractions, while near-cloud aerosol statistics are dominated by samples from scenes with higher cloud fractions; (2) near-cloud enhancements of attenuated backscatter occur for any cloud fraction but are most pronounced for higher cloud fractions; (3) the difference in the enhancements for different cloud fractions is most significant within 5km from clouds; (4) near-cloud enhancements can be well approximated by logarithmic functions of cloud fraction and distance to clouds. These findings demonstrate that if variability in cloud fraction across the scenes used to composite aerosol statistics are not considered, a sampling artifact will affect these statistics calculated as a function of distance to clouds. For the Azores-region dataset examined here, this artifact occurs mostly within 5 km from clouds, and exaggerates the near-cloud enhancements of lidar backscatter and color ratio by about 30. This shows that for accurate characterization of the changes in aerosol properties with distance to clouds, it is important to account for the impact of changes in cloud fraction.

Application of the CALIOP Layer Product to Evaluate the Vertical Distribution of Aerosols Estimated by Global Models: AeroCom Phase I Results

NASA Technical Reports Server (NTRS)

Koffi, Brigitte; Schulz, Michael; Breon, Francois-Marie; Griesfeller, Jan; Winker, David; Balkanski, Yves; Bauer, Susanne; Berntsen, Terje; Chin, Mian; Collins, William D.;

Direct Aerosol Radiative Forcing from Combined A-Train Observations - Preliminary Comparisons with AeroCom Models and Pathways to Observationally Based All-sky Estimates

NASA Astrophysics Data System (ADS)

Redemann, J.; Livingston, J. M.; Shinozuka, Y.; Kacenelenbogen, M. S.; Russell, P. B.; LeBlanc, S. E.; Vaughan, M.; Ferrare, R. A.; Hostetler, C. A.; Rogers, R. R.; Burton, S. P.; Torres, O.; Remer, L. A.; Stier, P.; Schutgens, N.

2014-12-01

We describe a technique for combining CALIOP aerosol backscatter, MODIS spectral AOD (aerosol optical depth), and OMI AAOD (absorption aerosol optical depth) retrievals for the purpose of estimating full spectral sets of aerosol radiative properties, and ultimately for calculating the 3-D distribution of direct aerosol radiative forcing. We present results using one year of data collected in 2007 and show comparisons of the aerosol radiative property estimates to collocated AERONET retrievals. Use of the recently released MODIS Collection 6 data for aerosol optical depths derived with the dark target and deep blue algorithms has extended the coverage of the multi-sensor estimates towards higher latitudes. Initial calculations of seasonal clear-sky aerosol radiative forcing based on our multi-sensor aerosol retrievals compare well with over-ocean and top of the atmosphere IPCC-2007 model-based results, and with more recent assessments in the "Climate Change Science Program Report: Atmospheric Aerosol Properties and Climate Impacts" (2009). For the first time, we present comparisons of our multi-sensor aerosol direct radiative forcing estimates to values derived from a subset of models that participated in the latest AeroCom initiative. We discuss the major challenges that exist in extending our clear-sky results to all-sky conditions. On the basis of comparisons to suborbital measurements, we present some of the limitations of the MODIS and CALIOP retrievals in the presence of adjacent or underlying clouds. Strategies for meeting these challenges are discussed.

RecutClub.com: An Open Source, Whole Slide Image-based Pathology Education System

PubMed Central

Christensen, Paul A.; Lee, Nathan E.; Thrall, Michael J.; Powell, Suzanne Z.; Chevez-Barrios, Patricia; Long, S. Wesley

2017-01-01

Background: Our institution's pathology unknown conferences provide educational cases for our residents. However, the cases have not been previously available digitally, have not been collated for postconference review, and were not accessible to a wider audience. Our objective was to create an inexpensive whole slide image (WSI) education suite to address these limitations and improve the education of pathology trainees. Materials and Methods: We surveyed residents regarding their preference between four unique WSI systems. We then scanned weekly unknown conference cases and study set cases and uploaded them to our custom built WSI viewer located at RecutClub.com. We measured site utilization and conference participation. Results: Residents preferred our OpenLayers WSI implementation to Ventana Virtuoso, Google Maps API, and OpenSlide. Over 16 months, we uploaded 1366 cases from 77 conferences and ten study sets, occupying 793.5 GB of cloud storage. Based on resident evaluations, the interface was easy to use and demonstrated minimal latency. Residents are able to review cases from home and from their mobile devices. Worldwide, 955 unique IP addresses from 52 countries have viewed cases in our site. Conclusions: We implemented a low-cost, publicly available repository of WSI slides for resident education. Our trainees are very satisfied with the freedom to preview either the glass slides or WSI and review the WSI postconference. Both local users and worldwide users actively and repeatedly view cases in our study set. PMID:28382224

The effects of cloud inhomogeneities upon radiative fluxes, and the supply of a cloud truth validation dataset

NASA Technical Reports Server (NTRS)

Welch, Ronald M.

1993-01-01

A series of cloud and sea ice retrieval algorithms are being developed in support of the Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) Science Team objectives. These retrievals include the following: cloud fractional area, cloud optical thickness, cloud phase (water or ice), cloud particle effective radius, cloud top heights, cloud base height, cloud top temperature, cloud emissivity, cloud 3-D structure, cloud field scales of organization, sea ice fractional area, sea ice temperature, sea ice albedo, and sea surface temperature. Due to the problems of accurately retrieving cloud properties over bright surfaces, an advanced cloud classification method was developed which is based upon spectral and textural features and artificial intelligence classifiers.

Cloud vertical profiles derived from CALIPSO and CloudSat and a comparison with MODIS derived clouds

NASA Astrophysics Data System (ADS)

Kato, S.; Sun-Mack, S.; Miller, W. F.; Rose, F. G.; Minnis, P.; Wielicki, B. A.; Winker, D. M.; Stephens, G. L.; Charlock, T. P.; Collins, W. D.; Loeb, N. G.; Stackhouse, P. W.; Xu, K.

2008-05-01

CALIPSO and CloudSat from the a-train provide detailed information of vertical distribution of clouds and aerosols. The vertical distribution of cloud occurrence is derived from one month of CALIPSO and CloudSat data as a part of the effort of merging CALIPSO, CloudSat and MODIS with CERES data. This newly derived cloud profile is compared with the distribution of cloud top height derived from MODIS on Aqua from cloud algorithms used in the CERES project. The cloud base from MODIS is also estimated using an empirical formula based on the cloud top height and optical thickness, which is used in CERES processes. While MODIS detects mid and low level clouds over the Arctic in April fairly well when they are the topmost cloud layer, it underestimates high- level clouds. In addition, because the CERES-MODIS cloud algorithm is not able to detect multi-layer clouds and the empirical formula significantly underestimates the depth of high clouds, the occurrence of mid and low-level clouds is underestimated. This comparison does not consider sensitivity difference to thin clouds but we will impose an optical thickness threshold to CALIPSO derived clouds for a further comparison. The effect of such differences in the cloud profile to flux computations will also be discussed. In addition, the effect of cloud cover to the top-of-atmosphere flux over the Arctic using CERES SSF and FLASHFLUX products will be discussed.

Relation of Cloud Occurrence Frequency, Overlap, and Effective Thickness Derived from CALIPSO and CloudSat Merged Cloud Vertical Profiles

NASA Technical Reports Server (NTRS)

Kato, Seiji; Sun-Mack, Sunny; Miller, Walter F.; Rose, Fred G.; Chen, Yan; Minnis, Patrick; Wielicki, Bruce A.

2009-01-01

A cloud frequency of occurrence matrix is generated using merged cloud vertical profile derived from Cloud-Aerosol Lidar with Orthogonal Polarization (CALIOP) and Cloud Profiling Radar (CPR). The matrix contains vertical profiles of cloud occurrence frequency as a function of the uppermost cloud top. It is shown that the cloud fraction and uppermost cloud top vertical pro les can be related by a set of equations when the correlation distance of cloud occurrence, which is interpreted as an effective cloud thickness, is introduced. The underlying assumption in establishing the above relation is that cloud overlap approaches the random overlap with increasing distance separating cloud layers and that the probability of deviating from the random overlap decreases exponentially with distance. One month of CALIPSO and CloudSat data support these assumptions. However, the correlation distance sometimes becomes large, which might be an indication of precipitation. The cloud correlation distance is equivalent to the de-correlation distance introduced by Hogan and Illingworth [2000] when cloud fractions of both layers in a two-cloud layer system are the same.

Parameterization of Cirrus Cloud Vertical Profiles and Geometrical Thickness Using CALIPSO and CloudSat Data

NASA Astrophysics Data System (ADS)

Khatri, P.; Iwabuchi, H.; Saito, M.

2017-12-01

High-level cirrus clouds, which normally occur over more than 20% of the globe, are known to have profound impacts on energy budget and climate change. The scientific knowledge regarding the vertical structure of such high-level cirrus clouds and their geometrical thickness are relatively poorer compared to low-level water clouds. Knowledge regarding cloud vertical structure is especially important in passive remote sensing of cloud properties using infrared channels or channels strongly influenced by gaseous absorption when clouds are geometrically thick and optically thin. Such information is also very useful for validating cloud resolving numerical models. This study analyzes global scale data of ice clouds identified by Cloud profiling Radar (CPR) onboard CloudSat and Cloud-Aerosol Lidar with Orthogonal Polarization (CALIOP) onboard CALIPSO to parameterize (i) vertical profiles of ice water content (IWC), cloud-particle effective radius (CER), and ice-particle number concentration for varying ice water path (IWP) values and (ii) the relation of cloud geometrical thickness (CGT) with IWP and CER for varying cloud top temperature (CTT) values. It is found that the maxima in IWC and CER profile shifts towards cloud base with the increase of IWP. Similarly, if the cloud properties remain same, CGT shows an increasing trend with the decrease of CTT. The implementation of such cloud vertical inhomogeneity parameterization in the forward model used in the Integrated Cloud Analysis System ICAS (Iwabuchi et al., 2016) generally shows increase of brightness temperatures in infrared channels compared to vertically homogeneous cloud assumption. The cloud vertical inhomogeneity is found to bring noticeable changes in retrieved cloud properties. Retrieved CER and cloud top height become larger for optically thick cloud. We will show results of comparison of cloud properties retrieved from infrared measurements and active remote sensing.

Clustering, randomness, and regularity in cloud fields: 2. Cumulus cloud fields

NASA Astrophysics Data System (ADS)

Zhu, T.; Lee, J.; Weger, R. C.; Welch, R. M.

1992-12-01

During the last decade a major controversy has been brewing concerning the proper characterization of cumulus convection. The prevailing view has been that cumulus clouds form in clusters, in which cloud spacing is closer than that found for the overall cloud field and which maintains its identity over many cloud lifetimes. This "mutual protection hypothesis" of Randall and Huffman (1980) has been challenged by the "inhibition hypothesis" of Ramirez et al. (1990) which strongly suggests that the spatial distribution of cumuli must tend toward a regular distribution. A dilemma has resulted because observations have been reported to support both hypotheses. The present work reports a detailed analysis of cumulus cloud field spatial distributions based upon Landsat, Advanced Very High Resolution Radiometer, and Skylab data. Both nearest-neighbor and point-to-cloud cumulative distribution function statistics are investigated. The results show unequivocally that when both large and small clouds are included in the cloud field distribution, the cloud field always has a strong clustering signal. The strength of clustering is largest at cloud diameters of about 200-300 m, diminishing with increasing cloud diameter. In many cases, clusters of small clouds are found which are not closely associated with large clouds. As the small clouds are eliminated from consideration, the cloud field typically tends towards regularity. Thus it would appear that the "inhibition hypothesis" of Ramirez and Bras (1990) has been verified for the large clouds. However, these results are based upon the analysis of point processes. A more exact analysis also is made which takes into account the cloud size distributions. Since distinct clouds are by definition nonoverlapping, cloud size effects place a restriction upon the possible locations of clouds in the cloud field. The net effect of this analysis is that the large clouds appear to be randomly distributed, with only weak tendencies towards regularity. For clouds less than 1 km in diameter, the average nearest-neighbor distance is equal to 3-7 cloud diameters. For larger clouds, the ratio of cloud nearest-neighbor distance to cloud diameter increases sharply with increasing cloud diameter. This demonstrates that large clouds inhibit the growth of other large clouds in their vicinity. Nevertheless, this leads to random distributions of large clouds, not regularity.

Complex organic molecules in strongly UV-irradiated gas⋆

PubMed Central

Cuadrado, S.; Goicoechea, J. R.; Cernicharo, J.; Fuente, A.; Pety, J.; Tercero, B.

2017-01-01

We investigate the presence of complex organic molecules (COMs) in strongly UV-irradiated interstellar molecular gas. We have carried out a complete millimetre (mm) line survey using the IRAM 30 m telescope towards the edge of the Orion Bar photodissociation region (PDR), close to the H2 dissociation front, a position irradiated by a very intense far-UV (FUV) radiation field. These observations have been complemented with 8.5″ resolution maps of the H2CO JKa,Kc = 51,5 → 41,4 and C18O J = 3 → 2 emission at 0.9 mm. Despite being a harsh environment, we detect more than 250 lines from COMs and related precursors: H2CO, CH3OH, HCO, H2CCO, CH3CHO, H2CS, HCOOH, CH3CN, CH2NH, HNCO, H213CO, and HC3N (in decreasing order of abundance). For each species, the large number of detected lines allowed us to accurately constrain their rotational temperatures (Trot) and column densities (N). Owing to subthermal excitation and intricate spectroscopy of some COMs (symmetric- and asymmetric-top molecules such as CH3CN and H2CO, respectively), a correct determination of N and Trot requires building rotational population diagrams of their rotational ladders separately. The inferred column densities are in the 1011 – 1013cm−2 range. We also provide accurate upper limit abundances for chemically related molecules that might have been expected, but are not conclusively detected at the edge of the PDR (HDCO, CH3O, CH3NC, CH3CCH, CH3OCH3, HCOOCH3, CH3CH2OH, CH3CH2CN, and CH2CHCN). A non-thermodynamic equilibrium excitation analysis for molecules with known collisional rate coefficients suggests that some COMs arise from different PDR layers but we cannot resolve them spatially. In particular, H2CO and CH3CN survive in the extended gas directly exposed to the strong FUV flux (Tk = 150 – 250 K and Td ≳ 60 K), whereas CH3OH only arises from denser and cooler gas clumps in the more shielded PDR interior (Tk = 40 – 50 K). The non-detection of HDCO towards the PDR edge is consistent with the minor role of pure gas-phase deuteration at very high temperatures. We find a HCO/H2CO/CH3OH ≃ 1/5/3 abundance ratio. These ratios are different from those inferred in hot cores and shocks. Taking into account the elevated gas and dust temperatures at the edge of the Bar (mostly mantle-free grains), we suggest the following scenarios for the formation of COMs: (i) hot gas-phase reactions not included in current models; (ii) warm grain-surface chemistry; or (iii) the PDR dynamics is such that COMs or precursors formed in cold icy grains deeper inside the molecular cloud desorb and advect into the PDR. PMID:29142326

Fast Simulators for Satellite Cloud Optical Centroid Pressure Retrievals, 1. Evaluation of OMI Cloud Retrievals

NASA Technical Reports Server (NTRS)

Joiner, J.; Vasilkov, A.; Gupta, P.; Bhartia, P. K.; Veefkind, P.; Sneep, M.; de Haan, J.; Polonsky, I.; Spurr, R.

2012-01-01

The cloud Optical Centroid Pressure (OCP), also known as the effective cloud pressure, is a satellite-derived parameter that is commonly used in trace-gas retrievals to account for the effects of clouds on near-infrared through ultraviolet radiance measurements. Fast simulators are desirable to further expand the use of cloud OCP retrievals into the operational and climate communities for applications such as data assimilation and evaluation of cloud vertical structure in general circulation models. In this paper, we develop and validate fast simulators that provide estimates of the cloud OCP given a vertical profile of optical extinction. We use a pressure-weighting scheme where the weights depend upon optical parameters of clouds and/or aerosol. A cloud weighting function is easily extracted using this formulation. We then use fast simulators to compare two different satellite cloud OCP retrievals from the Ozone Monitoring Instrument (OMI) with estimates based on collocated cloud extinction profiles from a combination of CloudS at radar and MODIS visible radiance data. These comparisons are made over a wide range of conditions to provide a comprehensive validation of the OMI cloud OCP retrievals. We find generally good agreement between OMI cloud OCPs and those predicted by CloudSat. However, the OMI cloud OCPs from the two independent algorithms agree better with each other than either does with the estimates from CloudSat/MODIS. Differences between OMI cloud OCPs and those based on CloudSat/MODIS may result from undetected snow/ice at the surface, cloud 3-D effects, low altitude clouds missed by CloudSat, and the fact that CloudSat only observes a relatively small fraction of an OMI field-of-view.

Research on cloud background infrared radiation simulation based on fractal and statistical data

NASA Astrophysics Data System (ADS)

Liu, Xingrun; Xu, Qingshan; Li, Xia; Wu, Kaifeng; Dong, Yanbing

2018-02-01

Cloud is an important natural phenomenon, and its radiation causes serious interference to infrared detector. Based on fractal and statistical data, a method is proposed to realize cloud background simulation, and cloud infrared radiation data field is assigned using satellite radiation data of cloud. A cloud infrared radiation simulation model is established using matlab, and it can generate cloud background infrared images for different cloud types (low cloud, middle cloud, and high cloud) in different months, bands and sensor zenith angles.

FLASHFlux Info

Atmospheric Science Data Center

2013-05-20

... Surface Emissivity Cloud Area Fraction Cloud Effective Pressure Cloud Effective Temperature Cloud Effective Height Cloud Top Pressure Cloud Base Pressure Cloud Particle Phase Liquid Water Path Ice Water Path Water Particle Radius Ice Particle ...

Cirrus Cloud Retrieval Using Infrared Sounding Data: Multilevel Cloud Errors.

NASA Astrophysics Data System (ADS)

Baum, Bryan A.; Wielicki, Bruce A.

1994-01-01

In this study we perform an error analysis for cloud-top pressure retrieval using the High-Resolution Infrared Radiometric Sounder (HIRS/2) 15-µm CO2 channels for the two-layer case of transmissive cirrus overlying an overcast, opaque stratiform cloud. This analysis includes standard deviation and bias error due to instrument noise and the presence of two cloud layers, the lower of which is opaque. Instantaneous cloud pressure retrieval errors are determined for a range of cloud amounts (0.1 1.0) and cloud-top pressures (850250 mb). Large cloud-top pressure retrieval errors are found to occur when a lower opaque layer is present underneath an upper transmissive cloud layer in the satellite field of view (FOV). Errors tend to increase with decreasing upper-cloud elective cloud amount and with decreasing cloud height (increasing pressure). Errors in retrieved upper-cloud pressure result in corresponding errors in derived effective cloud amount. For the case in which a HIRS FOV has two distinct cloud layers, the difference between the retrieved and actual cloud-top pressure is positive in all casts, meaning that the retrieved upper-cloud height is lower than the actual upper-cloud height. In addition, errors in retrieved cloud pressure are found to depend upon the lapse rate between the low-level cloud top and the surface. We examined which sounder channel combinations would minimize the total errors in derived cirrus cloud height caused by instrument noise and by the presence of a lower-level cloud. We find that while the sounding channels that peak between 700 and 1000 mb minimize random errors, the sounding channels that peak at 300—500 mb minimize bias errors. For a cloud climatology, the bias errors are most critical.

CERES-MISR Info

Atmospheric Science Data Center

2013-05-20

... Surface Albedo Cloud Area Fraction Cloud Effective Pressure Cloud Effective Temperature Cloud Effective Height Cloud Top Pressure Cloud Base Pressure Cloud Particle Phase Liquid Water Path Ice Water Path Water Particle Radius Ice Particle ...

CERES CRS Info

Atmospheric Science Data Center

2013-05-17

... Flux - Down Cloud Area Fraction Cloud Effective Pressure Cloud Effective Temperature Cloud Effective Height Cloud Top Pressure Cloud Base Pressure Cloud Particle Phase Liquid Water Path Ice Water Path Water Particle Radius Ice Particle ...

CERES SSF Current Info

Atmospheric Science Data Center

2013-05-17

... Surface Albedo Cloud Area Fraction Cloud Effective Pressure Cloud Effective Temperature Cloud Effective Height Cloud Top Pressure Cloud Base Pressure Cloud Particle Phase Liquid Water Path Ice Water Path Water Particle Radius Ice Particle ...

Spatial characteristics of the tropical cloud systems: comparison between model simulation and satellite observations

NASA Astrophysics Data System (ADS)

Zhang, Guang J.; Zurovac-Jevtic, Dance; Boer, Erwin R.

1999-10-01

A Lagrangian cloud classification algorithm is applied to the cloud fields in the tropical Pacific simulated by a high-resolution regional atmospheric model. The purpose of this work is to assess the model's ability to reproduce the observed spatial characteristics of the tropical cloud systems. The cloud systems are broadly grouped into three categories: deep clouds, mid-level clouds and low clouds. The deep clouds are further divided into mesoscale convective systems and nonmesoscale convective systems. It is shown that the model is able to simulate the total cloud cover for each category reasonably well. However, when the cloud cover is broken down into contributions from cloud systems of different sizes, it is shown that the simulated cloud size distribution is biased toward large cloud systems, with contribution from relatively small cloud systems significantly under-represented in the model for both deep and mid-level clouds. The number distribution and area contribution to the cloud cover from mesoscale convective systems are very well simulated compared to the satellite observations, so are low clouds as well. The dependence of the cloud physical properties on cloud scale is examined. It is found that cloud liquid water path, rainfall, and ocean surface sensible and latent heat fluxes have a clear dependence on cloud types and scale. This is of particular interest to studies of the cloud effects on surface energy budget and hydrological cycle. The diurnal variation of the cloud population and area is also examined. The model exhibits a varying degree of success in simulating the diurnal variation of the cloud number and area. The observed early morning maximum cloud cover in deep convective cloud systems is qualitatively simulated. However, the afternoon secondary maximum is missing in the model simulation. The diurnal variation of the tropospheric temperature is well reproduced by the model while simulation of the diurnal variation of the moisture field is poor. The implication of this comparison between model simulation and observations on cloud parameterization is discussed.

Spatial and Temporal Distribution of Clouds Observed by MODIS Onboard the Terra and Aqua Satellites

NASA Technical Reports Server (NTRS)

King, Michael D.; Platnick, Steven; Menzel, W. Paul; Ackerman, Steven A.; Hubanks, Paul A.

2012-01-01

The Moderate Resolution Imaging Spectroradiometer (MODIS) was developed by NASA and launched aboard the Terra spacecraft on December 18, 1999 and Aqua spacecraft on May 4, 2002. A comprehensive set of remote sensing algorithms for the retrieval of cloud physical and optical properties have enabled over twelve years of continuous observations of cloud properties from Terra and over nine years from Aqua. The archived products from these algorithms include 1 km pixel-level (Level-2) and global gridded Level-3 products. In addition to an extensive cloud mask, products include cloud-top properties (temperature, pressure, effective emissivity), cloud thermodynamic phase, cloud optical and microphysical parameters (optical thickness, effective particle radius, water path), as well as derived statistics. Results include the latitudinal distribution of cloud optical and radiative properties for both liquid water and ice clouds, as well as latitudinal distributions of cloud top pressure and cloud top temperature. MODIS finds the cloud fraction, as derived by the cloud mask, is nearly identical during the day and night, with only modest diurnal variation. Globally, the cloud fraction derived by the MODIS cloud mask is approx.67%, with somewhat more clouds over land during the afternoon and less clouds over ocean in the afternoon, with very little difference in global cloud cover between Terra and Aqua. Overall, cloud fraction over land is approx.55%, with a distinctive seasonal cycle, whereas the ocean cloudiness is much higher, around 72%, with much reduced seasonal variation. Cloud top pressure and temperature have distinct spatial and temporal patterns, and clearly reflect our understanding of the global cloud distribution. High clouds are especially prevalent over the northern hemisphere continents between 30 and 50 . Aqua and Terra have comparable zonal cloud top pressures, with Aqua having somewhat higher clouds (cloud top pressures lower by 100 hPa) over land due to afternoon deep convection. The coldest cloud tops (colder than 230 K) generally occur over Antarctica and the high clouds in the tropics (ITCZ and the deep convective clouds over the western tropical Pacific and Indian sub-continent).

Comparison of Cirrus Cloud Models: A Project of the GEWEX Cloud System Study (GCSS) Working Group on Cirrus Cloud Systems

NASA Technical Reports Server (NTRS)

Starr, David O'C.; Benedetti, Angela; Boehm, Matt; Brown, Philip R. A.; Gierens, Klaus M.; Girard, Eric; Giraud, Vincent; Jakob, Christian; Jensen, Eric

2000-01-01

The GEWEX Cloud System Study (GCSS, GEWEX is the Global Energy and Water Cycle Experiment) is a community activity aiming to promote development of improved cloud parameterizations for application in the large-scale general circulation models (GCMs) used for climate research and for numerical weather prediction. The GCSS strategy is founded upon the use of cloud-system models (CSMs). These are "process" models with sufficient spatial and temporal resolution to represent individual cloud elements, but spanning a wide range of space and time scales to enable statistical analysis of simulated cloud systems. GCSS also employs single-column versions of the parametric cloud models (SCMs) used in GCMs. GCSS has working groups on boundary-layer clouds, cirrus clouds, extratropical layer cloud systems, precipitating deep convective cloud systems, and polar clouds.

Contrasting Cloud Composition Between Coupled and Decoupled Marine Boundary Layer Clouds

NASA Astrophysics Data System (ADS)

WANG, Z.; Mora, M.; Dadashazar, H.; MacDonald, A.; Crosbie, E.; Bates, K. H.; Coggon, M. M.; Craven, J. S.; Xian, P.; Campbell, J. R.; AzadiAghdam, M.; Woods, R. K.; Jonsson, H.; Flagan, R. C.; Seinfeld, J.; Sorooshian, A.

2016-12-01

Marine stratocumulus clouds often become decoupled from the vertical layer immediately above the ocean surface. This study contrasts cloud chemical composition between coupled and decoupled marine stratocumulus clouds. Cloud water and droplet residual particle composition were measured in clouds off the California coast during three airborne experiments in July-August of separate years (E-PEACE 2011, NiCE 2013, BOAS 2015). Decoupled clouds exhibited significantly lower overall mass concentrations in both cloud water and droplet residual particles, consistent with reduced cloud droplet number concentration and sub-cloud aerosol (Dp > 100 nm) number concentration, owing to detachment from surface sources. Non-refractory sub-micrometer aerosol measurements show that coupled clouds exhibit higher sulfate mass fractions in droplet residual particles, owing to more abundant precursor emissions from the ocean and ships. Consequently, decoupled clouds exhibited higher mass fractions of organics, nitrate, and ammonium in droplet residual particles, owing to effects of long-range transport from more distant sources. Total cloud water mass concentration in coupled clouds was dominated by sodium and chloride, and their mass fractions and concentrations exceeded those in decoupled clouds. Conversely, with the exception of sea salt constituents (e.g., Cl, Na, Mg, K), cloud water mass fractions of all species examined were higher in decoupled clouds relative to coupled clouds. These results suggest that an important variable is the extent to which clouds are coupled to the surface layer when interpreting microphysical data relevant to clouds and aerosol particles.

Cloud radiative effect, cloud fraction and cloud type at two stations in Switzerland using hemispherical sky cameras

NASA Astrophysics Data System (ADS)

Aebi, Christine; Gröbner, Julian; Kämpfer, Niklaus; Vuilleumier, Laurent

2017-11-01

The current study analyses the cloud radiative effect during the daytime depending on cloud fraction and cloud type at two stations in Switzerland over a time period of 3 to 5 years. Information on fractional cloud coverage and cloud type is retrieved from images taken by visible all-sky cameras. Cloud-base height (CBH) data are retrieved from a ceilometer and integrated water vapour (IWV) data from GPS measurements. The longwave cloud radiative effect (LCE) for low-level clouds and a cloud coverage of 8 oktas has a median value between 59 and 72 Wm-2. For mid- and high-level clouds the LCE is significantly lower. It is shown that the fractional cloud coverage, the CBH and IWV all have an influence on the magnitude of the LCE. These observed dependences have also been modelled with the radiative transfer model MODTRAN5. The relative values of the shortwave cloud radiative effect (SCErel) for low-level clouds and a cloud coverage of 8 oktas are between -90 and -62 %. Also here the higher the cloud is, the less negative the SCErel values are. In cases in which the measured direct radiation value is below the threshold of 120 Wm-2 (occulted sun) the SCErel decreases substantially, while cases in which the measured direct radiation value is larger than 120 Wm-2 (visible sun) lead to a SCErel of around 0 %. In 14 and 10 % of the cases in Davos and Payerne respectively a cloud enhancement has been observed with a maximum in the cloud class cirrocumulus-altocumulus at both stations. The calculated median total cloud radiative effect (TCE) values are negative for almost all cloud classes and cloud coverages.

Using Radar, Lidar, and Radiometer measurements to Classify Cloud Type and Study Middle-Level Cloud Properties

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wang, Zhien

2010-06-29

The project is mainly focused on the characterization of cloud macrophysical and microphysical properties, especially for mixed-phased clouds and middle level ice clouds by combining radar, lidar, and radiometer measurements available from the ACRF sites. First, an advanced mixed-phase cloud retrieval algorithm will be developed to cover all mixed-phase clouds observed at the ACRF NSA site. The algorithm will be applied to the ACRF NSA observations to generate a long-term arctic mixed-phase cloud product for model validations and arctic mixed-phase cloud processes studies. To improve the representation of arctic mixed-phase clouds in GCMs, an advanced understanding of mixed-phase cloud processesmore » is needed. By combining retrieved mixed-phase cloud microphysical properties with in situ data and large-scale meteorological data, the project aim to better understand the generations of ice crystals in supercooled water clouds, the maintenance mechanisms of the arctic mixed-phase clouds, and their connections with large-scale dynamics. The project will try to develop a new retrieval algorithm to study more complex mixed-phase clouds observed at the ACRF SGP site. Compared with optically thin ice clouds, optically thick middle level ice clouds are less studied because of limited available tools. The project will develop a new two wavelength radar technique for optically thick ice cloud study at SGP site by combining the MMCR with the W-band radar measurements. With this new algorithm, the SGP site will have a better capability to study all ice clouds. Another area of the proposal is to generate long-term cloud type classification product for the multiple ACRF sites. The cloud type classification product will not only facilitates the generation of the integrated cloud product by applying different retrieval algorithms to different types of clouds operationally, but will also support other research to better understand cloud properties and to validate model simulations. The ultimate goal is to improve our cloud classification algorithm into a VAP.« less

Comparison of Cirrus Cloud Models: A Project of the GEWEX Cloud System Study (GCSS) Working Group on Cirrus Cloud Systems

NASA Technical Reports Server (NTRS)

Starr, David OC.; Benedetti, Angela; Boehm, Matt; Brown, Philip R. A.; Gierens, Klaus M.; Girard, Eric; Giraud, Vincent; Jakob, Christian; Jensen, Eric; Khvorostyanov, Vitaly;

SparkClouds: visualizing trends in tag clouds.

PubMed

Lee, Bongshin; Riche, Nathalie Henry; Karlson, Amy K; Carpendale, Sheelash

2010-01-01

Tag clouds have proliferated over the web over the last decade. They provide a visual summary of a collection of texts by visually depicting the tag frequency by font size. In use, tag clouds can evolve as the associated data source changes over time. Interesting discussions around tag clouds often include a series of tag clouds and consider how they evolve over time. However, since tag clouds do not explicitly represent trends or support comparisons, the cognitive demands placed on the person for perceiving trends in multiple tag clouds are high. In this paper, we introduce SparkClouds, which integrate sparklines into a tag cloud to convey trends between multiple tag clouds. We present results from a controlled study that compares SparkClouds with two traditional trend visualizations—multiple line graphs and stacked bar charts—as well as Parallel Tag Clouds. Results show that SparkClouds ability to show trends compares favourably to the alternative visualizations.

Type-Dependent Responses of Ice Cloud Properties to Aerosols From Satellite Retrievals

NASA Astrophysics Data System (ADS)

Zhao, Bin; Gu, Yu; Liou, Kuo-Nan; Wang, Yuan; Liu, Xiaohong; Huang, Lei; Jiang, Jonathan H.; Su, Hui

2018-04-01

Aerosol-cloud interactions represent one of the largest uncertainties in external forcings on our climate system. Compared with liquid clouds, the observational evidence for the aerosol impact on ice clouds is much more limited and shows conflicting results, partly because the distinct features of different ice cloud and aerosol types were seldom considered. Using 9-year satellite retrievals, we find that, for convection-generated (anvil) ice clouds, cloud optical thickness, cloud thickness, and cloud fraction increase with small-to-moderate aerosol loadings (<0.3 aerosol optical depth) and decrease with further aerosol increase. For in situ formed ice clouds, however, these cloud properties increase monotonically and more sharply with aerosol loadings. An increase in loading of smoke aerosols generally reduces cloud optical thickness of convection-generated ice clouds, while the reverse is true for dust and anthropogenic pollution aerosols. These relationships between different cloud/aerosol types provide valuable constraints on the modeling assessment of aerosol-ice cloud radiative forcing.

The effect of clouds on the earth's radiation budget

NASA Technical Reports Server (NTRS)

Ziskin, Daniel; Strobel, Darrell F.

1991-01-01

The radiative fluxes from the Earth Radiation Budget Experiment (ERBE) and the cloud properties from the International Satellite Cloud Climatology Project (ISCCP) over Indonesia for the months of June and July of 1985 and 1986 were analyzed to determine the cloud sensitivity coefficients. The method involved a linear least squares regression between co-incident flux and cloud coverage measurements. The calculated slope is identified as the cloud sensitivity. It was found that the correlations between the total cloud fraction and radiation parameters were modest. However, correlations between cloud fraction and IR flux were improved by separating clouds by height. Likewise, correlations between the visible flux and cloud fractions were improved by distinguishing clouds based on optical depth. Calculating correlations between the net fluxes and either height or optical depth segregated cloud fractions were somewhat improved. When clouds were classified in terms of their height and optical depth, correlations among all the radiation components were improved. Mean cloud sensitivities based on the regression of radiative fluxes against height and optical depth separated cloud types are presented. Results are compared to a one-dimensional radiation model with a simple cloud parameterization scheme.

Comparisons of Satellite-Deduced Overlapping Cloud Properties and CALIPSO CloudSat Data

NASA Technical Reports Server (NTRS)

Chang, Fu-Lung; Minnis, Patrick; Lin, Bing; Sun-Mack, Sunny

2010-01-01

Introduction to the overlapped cloud properties derived from polar-orbiting (MODIS) and geostationary (GOES-12, -13, Meteosat-8, -9, etc.) meteorological satellites, which are produced at the NASA Langley Research Center (LaRC) cloud research & development team (NASA lead scientist: Dr. Patrick Minnis). Comparison of the LaRC CERES MODIS Edition-3 overlapped cloud properties to the CALIPSO and the CloudSat active sensing data. High clouds and overlapped clouds occur frequently as deduced by CALIPSO (44 & 25%), CloudSat (25 & 4%), and MODIS (37 & 6%). Large fractions of optically-thin cirrus and overlapped clouds are deduced from CALIPSO, but much smaller fractions are from CloudSat and MODIS. For overlapped clouds, the averaged upper-layer CTHs are about 12.8 (CALIPSO), 10.9 (CloudSat) and 10 km (MODIS), and the averaged lower-layer CTHs are about 3.6 (CALIPSO), 3.2 (CloudSat) and 3.9 km (MODIS). Based on comparisons of upper and lower-layer cloud properties as deduced from the MODIS, CALIPSO and CloudSat data, more enhanced passive satellite methods for retrieving thin cirrus and overlapped cloud properties are needed and are under development.

Synergistic use of MODIS cloud products and AIRS radiance measurements for retrieval of cloud parameters

NASA Astrophysics Data System (ADS)

Li, J.; Menzel, W.; Sun, F.; Schmit, T.

2003-12-01

The Moderate-Resolution Imaging Spectroradiometer (MODIS) and Atmospheric Infrared Sounder (AIRS) measurements from the Earth Observing System's (EOS) Aqua satellite will enable global monitoring of the distribution of clouds. MODIS is able to provide at high spatial resolution (1 ~ 5km) the cloud mask, surface and cloud types, cloud phase, cloud-top pressure (CTP), effective cloud amount (ECA), cloud particle size (CPS), and cloud water path (CWP). AIRS is able to provide CTP, ECA, CPS, and CWP within the AIRS footprint with much better accuracy using its greatly enhanced hyperspectral remote sensing capability. The combined MODIS / AIRS system offers the opportunity for cloud products improved over those possible from either system alone. The algorithm developed was applied to process the AIRS longwave cloudy radiance measurements; results are compared with MODIS cloud products, as well as with the Geostationary Operational Environmental Satellite (GOES) sounder cloud products, to demonstrate the advantage of synergistic use of high spatial resolution MODIS cloud products and high spectral resolution AIRS sounder radiance measurements for optimal cloud retrieval. Data from ground-based instrumentation at the Atmospheric Radiation Measurement (ARM) Program Cloud and Radiation Test Bed (CART) in Oklahoma were used for the validation; results show that AIRS improves the MODIS cloud products in certain cases such as low-level clouds.

An automated fog monitoring system for the Indo-Gangetic Plains based on satellite measurements

NASA Astrophysics Data System (ADS)

Patil, Dinesh; Chourey, Reema; Rizvi, Sarwar; Singh, Manoj; Gautam, Ritesh

2016-05-01

Fog is a meteorological phenomenon that causes reduction in regional visibility and affects air quality, thus leading to various societal and economic implications, especially disrupting air and rail transportation. The persistent and widespread winter fog impacts the entire the Indo-Gangetic Plains (IGP), as frequently observed in satellite imagery. The IGP is a densely populated region in south Asia, inhabiting about 1/6th of the world's population, with a strong upward pollution trend. In this study, we have used multi-spectral radiances and aerosol/cloud retrievals from Terra/Aqua MODIS data for developing an automated web-based fog monitoring system over the IGP. Using our previous and existing methodologies, and ongoing algorithm development for the detection of fog and retrieval of associated microphysical properties (e.g. fog droplet effective radius), we characterize the widespread fog detection during both daytime and nighttime. Specifically, for the night time fog detection, the algorithm employs a satellite-based bi-spectral brightness temperature difference technique between two spectral channels: MODIS band-22 (3.9μm) and band-31 (10.75μm). Further, we are extending our algorithm development to geostationary satellites, for providing continuous monitoring of the spatial-temporal variation of fog. We anticipate that the ongoing and future development of a fog monitoring system would be of assistance to air, rail and vehicular transportation management, as well as for dissemination of fog information to government agencies and general public. The outputs of fog detection algorithm and related aerosol/cloud parameters are operationally disseminated via http://fogsouthasia.com/.

SPIDERMAN: an open-source code to model phase curves and secondary eclipses

NASA Astrophysics Data System (ADS)

Louden, Tom; Kreidberg, Laura

2018-06-01

We present SPIDERMAN (Secondary eclipse and Phase curve Integrator for 2D tempERature MAppiNg), a fast code for calculating exoplanet phase curves and secondary eclipses with arbitrary surface brightness distributions in two dimensions. Using a geometrical algorithm, the code solves exactly the area of sections of the disc of the planet that are occulted by the star. The code is written in C with a user-friendly Python interface, and is optimized to run quickly, with no loss in numerical precision. Approximately 1000 models can be generated per second in typical use, making Markov Chain Monte Carlo analyses practicable. The modular nature of the code allows easy comparison of the effect of multiple different brightness distributions for the data set. As a test case, we apply the code to archival data on the phase curve of WASP-43b using a physically motivated analytical model for the two-dimensional brightness map. The model provides a good fit to the data; however, it overpredicts the temperature of the nightside. We speculate that this could be due to the presence of clouds on the nightside of the planet, or additional reflected light from the dayside. When testing a simple cloud model, we find that the best-fitting model has a geometric albedo of 0.32 ± 0.02 and does not require a hot nightside. We also test for variation of the map parameters as a function of wavelength and find no statistically significant correlations. SPIDERMAN is available for download at https://github.com/tomlouden/spiderman.

BioVLAB-MMIA-NGS: microRNA-mRNA integrated analysis using high-throughput sequencing data.

PubMed

Chae, Heejoon; Rhee, Sungmin; Nephew, Kenneth P; Kim, Sun

2015-01-15

It is now well established that microRNAs (miRNAs) play a critical role in regulating gene expression in a sequence-specific manner, and genome-wide efforts are underway to predict known and novel miRNA targets. However, the integrated miRNA-mRNA analysis remains a major computational challenge, requiring powerful informatics systems and bioinformatics expertise. The objective of this study was to modify our widely recognized Web server for the integrated mRNA-miRNA analysis (MMIA) and its subsequent deployment on the Amazon cloud (BioVLAB-MMIA) to be compatible with high-throughput platforms, including next-generation sequencing (NGS) data (e.g. RNA-seq). We developed a new version called the BioVLAB-MMIA-NGS, deployed on both Amazon cloud and on a high-performance publicly available server called MAHA. By using NGS data and integrating various bioinformatics tools and databases, BioVLAB-MMIA-NGS offers several advantages. First, sequencing data is more accurate than array-based methods for determining miRNA expression levels. Second, potential novel miRNAs can be detected by using various computational methods for characterizing miRNAs. Third, because miRNA-mediated gene regulation is due to hybridization of an miRNA to its target mRNA, sequencing data can be used to identify many-to-many relationship between miRNAs and target genes with high accuracy. http://epigenomics.snu.ac.kr/biovlab_mmia_ngs/. © The Author 2014. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

Quantifying the radiative and microphysical impacts of fire aerosols on cloud dynamics in the tropics using temporally offset satellite observations

NASA Astrophysics Data System (ADS)

Tosca, M. G.; Diner, D. J.; Garay, M. J.; Kalashnikova, O.

2013-12-01

Anthropogenic fires in Southeast Asia and Central America emit smoke that affects cloud dynamics, meteorology, and climate. We measured the cloud response to direct and indirect forcing from biomass burning aerosols using aerosol retrievals from the Multi-angle Imaging SpectroRadiometer (MISR) and non-synchronous cloud retrievals from the MODerate resolution Imaging Spectroradiometer (MODIS) from collocated morning and afternoon overpasses. Level 2 data from thirty-one individual scenes acquired between 2006 and 2010 were used to quantify changes in cloud fraction, cloud droplet size, cloud optical depth and cloud top temperature from morning (10:30am local time) to afternoon (1:30pm local time) in the presence of varying aerosol burdens. We accounted for large-scale meteorological differences between scenes by normalizing observed changes to the mean difference per individual scene. Elevated AODs reduced cloud fraction and cloud droplet size and increased cloud optical depths in both Southeast Asia and Central America. In mostly cloudy regions, aerosols significantly reduced cloud fraction and cloud droplet sizes, but in clear skies, cloud fraction, cloud optical thickness and cloud droplet sizes increased. In clouds with vertical development, aerosols reduced cloud fraction via semi-direct effects but spurred cloud growth via indirect effects. These results imply a positive feedback loop between anthropogenic burning and cloudiness in both Central America and Southeast Asia, and are consistent with previous studies linking smoke aerosols to both cloud reduction and convective invigoration.

Cloud radiative properties and aerosol - cloud interaction

NASA Astrophysics Data System (ADS)

Viviana Vladutescu, Daniela; Gross, Barry; Li, Clement; Han, Zaw

2015-04-01

The presented research discusses different techniques for improvement of cloud properties measurements and analysis. The need for these measurements and analysis arises from the high errors noticed in existing methods that are currently used in retrieving cloud properties and implicitly cloud radiative forcing. The properties investigated are cloud fraction (cf) and cloud optical thickness (COT) measured with a suite of collocated remote sensing instruments. The novel approach makes use of a ground based "poor man's camera" to detect cloud and sky radiation in red, green, and blue with a high spatial resolution of 30 mm at 1km. The surface-based high resolution photography provides a new and interesting view of clouds. As the cloud fraction cannot be uniquely defined or measured, it depends on threshold and resolution. However as resolution decreases, cloud fraction tends to increase if the threshold is below the mean, and vice versa. Additionally cloud fractal dimension also depends on threshold. Therefore these findings raise concerns over the ability to characterize clouds by cloud fraction or fractal dimension. Our analysis indicate that Principal Component analysis may lead to a robust means of quantifying cloud contribution to radiance. The cloud images are analyzed in conjunction with a collocated CIMEL sky radiometer, Microwave Radiometer and LIDAR to determine homogeneity and heterogeneity. Additionally, MFRSR measurements are used to determine the cloud radiative properties as a validation tool to the results obtained from the other instruments and methods. The cloud properties to be further studied are aerosol- cloud interaction, cloud particle radii, and vertical homogeneity.

Vertical Structure of Ice Cloud Layers From CloudSat and CALIPSO Measurements and Comparison to NICAM Simulations

NASA Technical Reports Server (NTRS)

Ham, Seung-Hee; Sohn, Byung-Ju; Kato, Seiji; Satoh, Masaki

2013-01-01

The shape of the vertical profile of ice cloud layers is examined using 4 months of CloudSat and Cloud-Aerosol Lidar and Infrared Pathfinder Satellite Observation (CALIPSO) global measurements taken on January, April, July, and October 2007. Ice clouds are selected using temperature profiles when the cloud base is located above the 253K temperature level. The obtained ice water content (IWC), effective radius, or extinction coefficient profiles are normalized by their layer mean values and are expressed in the normalized vertical coordinate, which is defined as 0 and 1 at the cloud base and top heights, respectively. Both CloudSat and CALIPSO observations show that the maximum in the IWC and extinction profiles shifts toward the cloud bottom, as the cloud depth increases. In addition, clouds with a base reaching the surface in a high-latitude region show that the maximum peak of the IWC and extinction profiles occurs near the surface, which is presumably due to snow precipitation. CloudSat measurements show that the seasonal difference in normalized cloud vertical profiles is not significant, whereas the normalized cloud vertical profile significantly varies depending on the cloud type and the presence of precipitation. It is further examined if the 7 day Nonhydrostatic Icosahedral Atmospheric Model (NICAM) simulation results from 25 December 2006 to 1 January 2007 generate similar cloud profile shapes. NICAM IWC profiles also show maximum peaks near the cloud bottom for thick cloud layers and maximum peaks at the cloud bottom for low-level clouds near the surface. It is inferred that oversized snow particles in the NICAM cloud scheme produce a more vertically inhomogeneous IWC profile than observations due to quick sedimentation.

Cloud detection method for Chinese moderate high resolution satellite imagery (Conference Presentation)

NASA Astrophysics Data System (ADS)

Zhong, Bo; Chen, Wuhan; Wu, Shanlong; Liu, Qinhuo

2016-10-01

Cloud detection of satellite imagery is very important for quantitative remote sensing research and remote sensing applications. However, many satellite sensors don't have enough bands for a quick, accurate, and simple detection of clouds. Particularly, the newly launched moderate to high spatial resolution satellite sensors of China, such as the charge-coupled device on-board the Chinese Huan Jing 1 (HJ-1/CCD) and the wide field of view (WFV) sensor on-board the Gao Fen 1 (GF-1), only have four available bands including blue, green, red, and near infrared bands, which are far from the requirements of most could detection methods. In order to solve this problem, an improved and automated cloud detection method for Chinese satellite sensors called OCM (Object oriented Cloud and cloud-shadow Matching method) is presented in this paper. It firstly modified the Automatic Cloud Cover Assessment (ACCA) method, which was developed for Landsat-7 data, to get an initial cloud map. The modified ACCA method is mainly based on threshold and different threshold setting produces different cloud map. Subsequently, a strict threshold is used to produce a cloud map with high confidence and large amount of cloud omission and a loose threshold is used to produce a cloud map with low confidence and large amount of commission. Secondly, a corresponding cloud-shadow map is also produced using the threshold of near-infrared band. Thirdly, the cloud maps and cloud-shadow map are transferred to cloud objects and cloud-shadow objects. Cloud and cloud-shadow are usually in pairs; consequently, the final cloud and cloud-shadow maps are made based on the relationship between cloud and cloud-shadow objects. OCM method was tested using almost 200 HJ-1/CCD images across China and the overall accuracy of cloud detection is close to 90%.

Study on Diagnosing Three Dimensional Cloud Region

NASA Astrophysics Data System (ADS)

Cai, M., Jr.; Zhou, Y., Sr.

2017-12-01

Cloud mask and relative humidity (RH) provided by Cloudsat products from 2007 to 2008 are statistical analyzed to get RH Threshold between cloud and clear sky and its variation with height. A diagnosis method is proposed based on reanalysis data and applied to three-dimensional cloud field diagnosis of a real case. Diagnostic cloud field was compared to satellite, radar and other cloud precipitation observation. Main results are as follows. 1.Cloud region where cloud mask is bigger than 20 has a good space and time corresponding to the high value relative humidity region, which is provide by ECWMF AUX product. Statistical analysis of the RH frequency distribution within and outside cloud indicated that, distribution of RH in cloud at different height range shows single peak type, and the peak is near a RH value of 100%. Local atmospheric environment affects the RH distribution outside cloud, which leads to TH distribution vary in different region or different height. 2. RH threshold and its vertical distribution used for cloud diagnostic was analyzed from Threat Score method. The method is applied to a three dimension cloud diagnosis case study based on NCEP reanalysis data and th diagnostic cloud field is compared to satellite, radar and cloud precipitation observation on ground. It is found that, RH gradient is very big around cloud region and diagnosed cloud area by RH threshold method is relatively stable. Diagnostic cloud area has a good corresponding to updraft region. The cloud and clear sky distribution corresponds to satellite the TBB observations overall. Diagnostic cloud depth, or sum cloud layers distribution consists with optical thickness and precipitation on ground better. The cloud vertical profile reveals the relation between cloud vertical structure and weather system clearly. Diagnostic cloud distribution correspond to cloud observations on ground very well. 3. The method is improved by changing the vertical interval from altitude to temperature. The result shows that, the five factors , including TS score for clear sky, empty forecast, missed forecast, and especially TS score for cloud region and the accurate rate increased obviously. So, the RH threshold and its vertical distribution with temperature is better than with altitude. More tests and comparision should be done to assess the diagnosis method.

Statistical Analyses of Satellite Cloud Object Data From CERES. Part 4; Boundary-layer Cloud Objects During 1998 El Nino

NASA Technical Reports Server (NTRS)

Xu, Kuan-Man; Wong, Takmeng; Wielicki, Bruce A.; Parker, Lindsay

2006-01-01

Three boundary-layer cloud object types, stratus, stratocumulus and cumulus, that occurred over the Pacific Ocean during January-August 1998, are identified from the CERES (Clouds and the Earth s Radiant Energy System) single scanner footprint (SSF) data from the TRMM (Tropical Rainfall Measuring Mission) satellite. This study emphasizes the differences and similarities in the characteristics of each cloud-object type between the tropical and subtropical regions and among different size categories and among small geographic areas. Both the frequencies of occurrence and statistical distributions of cloud physical properties are analyzed. In terms of frequencies of occurrence, stratocumulus clouds dominate the entire boundary layer cloud population in all regions and among all size categories. Stratus clouds are more prevalent in the subtropics and near the coastal regions, while cumulus clouds are relatively prevalent over open ocean and the equatorial regions, particularly, within the small size categories. The largest size category of stratus cloud objects occurs more frequently in the subtropics than in the tropics and has much larger average size than its cumulus and stratocumulus counterparts. Each of the three cloud object types exhibits small differences in statistical distributions of cloud optical depth, liquid water path, TOA albedo and perhaps cloud-top height, but large differences in those of cloud-top temperature and OLR between the tropics and subtropics. Differences in the sea surface temperature (SST) distributions between the tropics and subtropics influence some of the cloud macrophysical properties, but cloud microphysical properties and albedo for each cloud object type are likely determined by (local) boundary-layer dynamics and structures. Systematic variations of cloud optical depth, TOA albedo, cloud-top height, OLR and SST with cloud object sizes are pronounced for the stratocumulus and stratus types, which are related to systematic variations of the strength of inversion with cloud object sizes, produced by large-scale subsidence. The differences in cloud macrophysical properties over small regions are significantly larger than those of cloud microphysical properties and TOA albedo, suggesting a greater control of (local) large-scale dynamics and other factors on cloud object properties. When the three cloud object types are combined, the relative population among the three types is the most important factor for determining the cloud object properties in a Pacific transect where the transition of boundary-layer cloud types takes place.

Modeling and parameterization of horizontally inhomogeneous cloud radiative properties

NASA Technical Reports Server (NTRS)

Welch, R. M.

1995-01-01

One of the fundamental difficulties in modeling cloud fields is the large variability of cloud optical properties (liquid water content, reflectance, emissivity). The stratocumulus and cirrus clouds, under special consideration for FIRE, exhibit spatial variability on scales of 1 km or less. While it is impractical to model individual cloud elements, the research direction is to model a statistical ensembles of cloud elements with mean-cloud properties specified. The major areas of this investigation are: (1) analysis of cloud field properties; (2) intercomparison of cloud radiative model results with satellite observations; (3) radiative parameterization of cloud fields; and (4) development of improved cloud classification algorithms.

Comparison Between CCCM and CloudSat Radar-Lidar (RL) Cloud and Radiation Products

NASA Technical Reports Server (NTRS)

Ham, Seung-Hee; Kato, Seiji; Rose, Fred G.; Sun-Mack, Sunny

2015-01-01

To enhance cloud properties, LaRC and CIRA developed each combination algorithm for obtained properties from passive, active and imager in A-satellite constellation. When comparing global cloud fraction each other, LaRC-produced CERES-CALIPSO-CloudSat-MODIS (CCCM) products larger low-level cloud fraction over tropic ocean, while CIRA-produced Radar-Lidar (RL) shows larger mid-level cloud fraction for high latitude region. The reason for different low-level cloud fraction is due to different filtering method of lidar-detected cloud layers. Meanwhile difference in mid-level clouds is occurred due to different priority of cloud boundaries from lidar and radar.

Insitu aircraft verification of the quality of satellite cloud winds over oceanic regions

NASA Technical Reports Server (NTRS)

Hasler, A. F.; Skillman, W. C.

1979-01-01

A five year aircraft experiment to verify the quality of satellite cloud winds over oceans using in situ aircraft inertial navigation system wind measurements is presented. The final results show that satellite measured cumulus cloud motions are very good estimators of the cloud base wind for trade wind and subtropical high regions. The average magnitude of the vector differences between the cloud motion and the cloud base wind is given. For cumulus clouds near frontal regions, the cloud motion agreed best with the mean cloud layer wind. For a very limited sample, cirrus cloud motions also most closely followed the mean wind in the cloud layer.

Research on private cloud computing based on analysis on typical opensource platform: a case study with Eucalyptus and Wavemaker

NASA Astrophysics Data System (ADS)

Yu, Xiaoyuan; Yuan, Jian; Chen, Shi

2013-03-01

Cloud computing is one of the most popular topics in the IT industry and is recently being adopted by many companies. It has four development models, as: public cloud, community cloud, hybrid cloud and private cloud. Except others, private cloud can be implemented in a private network, and delivers some benefits of cloud computing without pitfalls. This paper makes a comparison of typical open source platforms through which we can implement a private cloud. After this comparison, we choose Eucalyptus and Wavemaker to do a case study on the private cloud. We also do some performance estimation of cloud platform services and development of prototype software as cloud services.

Trend of surface solar radiation over Asia simulated by aerosol transport-climate model

NASA Astrophysics Data System (ADS)

Takemura, T.; Ohmura, A.

2009-12-01

Long-term records of surface radiation measurements indicate a decrease in the solar radiation between the 1950s and 1980s (“global dimming”), then its recovery afterward (“global brightening”) at many locations all over the globe [Wild, 2009]. On the other hand, the global brightening is delayed over the Asian region [Ohmura, 2009]. It is suggested that these trends of the global dimming and brightening are strongly related with a change in aerosol loading in the atmosphere which affect the climate change through the direct, semi-direct, and indirect effects. In this study, causes of the trend of the surface solar radiation over Asia during last several decades are analyzed with an aerosol transport-climate model, SPRINTARS. SPRINTARS is coupled with MIROC which is a general circulation model (GCM) developed by Center for Climate System Research (CCSR)/University of Tokyo, National Institute for Environmental Studies (NIES), and Frontier Research Center for Global Change (FRCGC) [Takemura et al., 2000, 2002, 2005, 2009]. The horizontal and vertical resolutions are T106 (approximately 1.1° by 1.1°) and 56 layers, respectively. SPRINTARS includes the transport, radiation, cloud, and precipitation processes of all main tropospheric aerosols (black and organic carbons, sulfate, soil dust, and sea salt). The model treats not only the aerosol mass mixing ratios but also the cloud droplet and ice crystal number concentrations as prognostic variables, and the nucleation processes of cloud droplets and ice crystals depend on the number concentrations of each aerosol species. Changes in the cloud droplet and ice crystal number concentrations affect the cloud radiation and precipitation processes in the model. Historical emissions, that is consumption of fossil fuel and biofuel, biomass burning, aircraft emissions, and volcanic eruptions are prescribed from database provided by the Aerosol Model Intercomparison Project (AeroCom) and the latest IPCC inventories. Continuous hindcast simulation during the last several decades is done to compare with surface radiation measurements. Cause of the global dimming and brightening is separated into the aerosol direct and indirect effects from the simulation. Acknowledgments. The simulation in this study was performed on the NIES supercomputer system (NEC SX-8R). This study is partly supported by the Global Environment Research Fund (RF-091) by the Ministry of the Environment of Japan, Grant-in-Aid for Young Scientist (21681001) by the Ministry of Education, Culture, Sports, Science, and Technology of Japan, and Mitsui & Co., Ltd. Environment Fund (R08-D035). References Ohmura, A. (2009), J. Geophys. Res., 114, doi:10.1029/2008JD011290. Takemura, T., et al. (2000), J. Geophys. Res., 105, 17853-17873. Takemura, T., et al. (2002), J. Climate, 15, 333-352. Takemura, T., et al. (2005), J. Geophys. Res., 110, doi:10.1029/2004JD005029. Takemura, T., et al. (2009), Atmos. Chem. Phys., 9, 3061-3073. Wild, M. (2009), J. Geophys. Res., 114, doi:10.1029/2008JD011470.

Cloud property datasets retrieved from AVHRR, MODIS, AATSR and MERIS in the framework of the Cloud_cci project

NASA Astrophysics Data System (ADS)

Stengel, Martin; Stapelberg, Stefan; Sus, Oliver; Schlundt, Cornelia; Poulsen, Caroline; Thomas, Gareth; Christensen, Matthew; Carbajal Henken, Cintia; Preusker, Rene; Fischer, Jürgen; Devasthale, Abhay; Willén, Ulrika; Karlsson, Karl-Göran; McGarragh, Gregory R.; Proud, Simon; Povey, Adam C.; Grainger, Roy G.; Fokke Meirink, Jan; Feofilov, Artem; Bennartz, Ralf; Bojanowski, Jedrzej S.; Hollmann, Rainer

2017-11-01

New cloud property datasets based on measurements from the passive imaging satellite sensors AVHRR, MODIS, ATSR2, AATSR and MERIS are presented. Two retrieval systems were developed that include components for cloud detection and cloud typing followed by cloud property retrievals based on the optimal estimation (OE) technique. The OE-based retrievals are applied to simultaneously retrieve cloud-top pressure, cloud particle effective radius and cloud optical thickness using measurements at visible, near-infrared and thermal infrared wavelengths, which ensures spectral consistency. The retrieved cloud properties are further processed to derive cloud-top height, cloud-top temperature, cloud liquid water path, cloud ice water path and spectral cloud albedo. The Cloud_cci products are pixel-based retrievals, daily composites of those on a global equal-angle latitude-longitude grid, and monthly cloud properties such as averages, standard deviations and histograms, also on a global grid. All products include rigorous propagation of the retrieval and sampling uncertainties. Grouping the orbital properties of the sensor families, six datasets have been defined, which are named AVHRR-AM, AVHRR-PM, MODIS-Terra, MODIS-Aqua, ATSR2-AATSR and MERIS+AATSR, each comprising a specific subset of all available sensors. The individual characteristics of the datasets are presented together with a summary of the retrieval systems and measurement records on which the dataset generation were based. Example validation results are given, based on comparisons to well-established reference observations, which demonstrate the good quality of the data. In particular the ensured spectral consistency and the rigorous uncertainty propagation through all processing levels can be considered as new features of the Cloud_cci datasets compared to existing datasets. In addition, the consistency among the individual datasets allows for a potential combination of them as well as facilitates studies on the impact of temporal sampling and spatial resolution on cloud climatologies.

For each dataset a digital object identifier has been issued:

Cloud_cci AVHRR-AM: https://doi.org/10.5676/DWD/ESA_Cloud_cci/AVHRR-AM/V002

Cloud_cci AVHRR-PM: https://doi.org/10.5676/DWD/ESA_Cloud_cci/AVHRR-PM/V002

Cloud_cci MODIS-Terra: https://doi.org/10.5676/DWD/ESA_Cloud_cci/MODIS-Terra/V002

Cloud_cci MODIS-Aqua: https://doi.org/10.5676/DWD/ESA_Cloud_cci/MODIS-Aqua/V002

Cloud_cci ATSR2-AATSR: https://doi.org/10.5676/DWD/ESA_Cloud_cci/ATSR2-AATSR/V002

Cloud_cci MERIS+AATSR: https://doi.org/10.5676/DWD/ESA_Cloud_cci/MERIS+AATSR/V002

Microphysics of Clouds with the Relaxed Arakawa-Schubert Scheme (McRAS). Part I: Design and Evaluation with GATE Phase III Data.

NASA Astrophysics Data System (ADS)

Sud, Y. C.; Walker, G. K.

1999-09-01

A prognostic cloud scheme named McRAS (Microphysics of Clouds with Relaxed Arakawa-Schubert Scheme) has been designed and developed with the aim of improving moist processes, microphysics of clouds, and cloud-radiation interactions in GCMs. McRAS distinguishes three types of clouds: convective, stratiform, and boundary layer. The convective clouds transform and merge into stratiform clouds on an hourly timescale, while the boundary layer clouds merge into the stratiform clouds instantly. The cloud condensate converts into precipitation following the autoconversion equations of Sundqvist that contain a parametric adaptation for the Bergeron-Findeisen process of ice crystal growth and collection of cloud condensate by precipitation. All clouds convect, advect, as well as diffuse both horizontally and vertically with a fully interactive cloud microphysics throughout the life cycle of the cloud, while the optical properties of clouds are derived from the statistical distribution of hydrometeors and idealized cloud geometry.An evaluation of McRAS in a single-column model (SCM) with the Global Atmospheric Research Program Atlantic Tropical Experiment (GATE) Phase III data has shown that, together with the rest of the model physics, McRAS can simulate the observed temperature, humidity, and precipitation without discernible systematic errors. The time history and time mean in-cloud water and ice distribution, fractional cloudiness, cloud optical thickness, origin of precipitation in the convective anvils and towers, and the convective updraft and downdraft velocities and mass fluxes all simulate a realistic behavior. Some of these diagnostics are not verifiable with data on hand. These SCM sensitivity tests show that (i) without clouds the simulated GATE-SCM atmosphere is cooler than observed; (ii) the model's convective scheme, RAS, is an important subparameterization of McRAS; and (iii) advection of cloud water substance is helpful in simulating better cloud distribution and cloud-radiation interaction. An evaluation of the performance of McRAS in the Goddard Earth Observing System II GCM is given in a companion paper (Part II).

Extraction of Profile Information from Cloud Contaminated Radiances. Appendixes 2

NASA Technical Reports Server (NTRS)

Smith, W. L.; Zhou, D. K.; Huang, H.-L.; Li, Jun; Liu, X.; Larar, A. M.

2003-01-01

Clouds act to reduce the signal level and may produce noise dependence on the complexity of the cloud properties and the manner in which they are treated in the profile retrieval process. There are essentially three ways to extract profile information from cloud contaminated radiances: (1) cloud-clearing using spatially adjacent cloud contaminated radiance measurements, (2) retrieval based upon the assumption of opaque cloud conditions, and (3) retrieval or radiance assimilation using a physically correct cloud radiative transfer model which accounts for the absorption and scattering of the radiance observed. Cloud clearing extracts the radiance arising from the clear air portion of partly clouded fields of view permitting soundings to the surface or the assimilation of radiances as in the clear field of view case. However, the accuracy of the clear air radiance signal depends upon the cloud height and optical property uniformity across the two fields of view used in the cloud clearing process. The assumption of opaque clouds within the field of view permits relatively accurate profiles to be retrieved down to near cloud top levels, the accuracy near the cloud top level being dependent upon the actual microphysical properties of the cloud. The use of a physically correct cloud radiative transfer model enables accurate retrievals down to cloud top levels and below semi-transparent cloud layers (e.g., cirrus). It should also be possible to assimilate cloudy radiances directly into the model given a physically correct cloud radiative transfer model using geometric and microphysical cloud parameters retrieved from the radiance spectra as initial cloud variables in the radiance assimilation process. This presentation reviews the above three ways to extract profile information from cloud contaminated radiances. NPOESS Airborne Sounder Testbed-Interferometer radiance spectra and Aqua satellite AIRS radiance spectra are used to illustrate how cloudy radiances can be used in the profile retrieval process.

A physically based algorithm for non-blackbody correction of the cloud top temperature for the convective clouds

NASA Astrophysics Data System (ADS)

Wang, C.; Luo, Z. J.; Chen, X.; Zeng, X.; Tao, W.; Huang, X.

2012-12-01

Cloud top temperature is a key parameter to retrieval in the remote sensing of convective clouds. Passive remote sensing cannot directly measure the temperature at the cloud tops. Here we explore a synergistic way of estimating cloud top temperature by making use of the simultaneous passive and active remote sensing of clouds (in this case, CloudSat and MODIS). Weighting function of the MODIS 11μm band is explicitly calculated by feeding cloud hydrometer profiles from CloudSat retrievals and temperature and humidity profiles based on ECMWF ERA-interim reanalysis into a radiation transfer model. Among 19,699 tropical deep convective clouds observed by the CloudSat in 2008, the averaged effective emission level (EEL, where the weighting function attains its maximum) is at optical depth 0.91 with a standard deviation of 0.33. Furthermore, the vertical gradient of CloudSat radar reflectivity, an indicator of the fuzziness of convective cloud top, is linearly proportional to, d_{CTH-EEL}, the distance between the EEL of 11μm channel and cloud top height (CTH) determined by the CloudSat when d_{CTH-EEL}<0.6km. Beyond 0.6km, the distance has little sensitivity to the vertical gradient of CloudSat radar reflectivity. Based on these findings, we derive a formula between the fuzziness in the cloud top region, which is measurable by CloudSat, and the MODIS 11μm brightness temperature assuming that the difference between effective emission temperature and the 11μm brightness temperature is proportional to the cloud top fuzziness. This formula is verified using the simulated deep convective cloud profiles by the Goddard Cumulus Ensemble model. We further discuss the application of this formula in estimating cloud top buoyancy as well as the error characteristics of the radiative calculation within such deep-convective clouds.

Climatology of cloud (radiative) parameters at two stations in Switzerland using hemispherical sky-cameras

NASA Astrophysics Data System (ADS)

Aebi, Christine; Gröbner, Julian; Kämpfer, Niklaus; Vuilleumier, Laurent

2017-04-01

Our study analyses climatologies of cloud fraction, cloud type and cloud radiative effect depending on different parameters at two stations in Switzerland. The calculations have been performed for shortwave (0.3 - 3 μm) and longwave (3 - 100 μm) radiation separately. Information about fractional cloud coverage and cloud type is automatically retrieved from images taken by visible all-sky cameras at the two stations Payerne (490 m asl) and Davos (1594 m asl) using a cloud detection algorithm developed by PMOD/WRC (Wacker et al., 2015). Radiation data are retrieved from pyranometers and pyrgeometers, the cloud base height from a ceilometer and IWV data from GPS measurements. Interestingly, Davos and Payerne show different trends in terms of cloud coverage and cloud fraction regarding seasonal variations. The absolute longwave cloud radiative effect (LCE) for low-level clouds and a cloud coverage of 8 octas has a median value between 61 and 72 Wm-2. It is shown that the fractional cloud coverage, the cloud base height (CBH) and integrated water vapour (IWV) all have an influence on the magnitude of the LCE and will be illustrated with key examples. The relative values of the shortwave cloud radiative effect (SCE) for low-level clouds and a cloud coverage of 8 octas are between -88 to -62 %. The SCE is also influenced by the latter parameters, but also if the sun is covered or not by clouds. At both stations situations of shortwave radiation cloud enhancements have been observed and will be discussed. Wacker S., J. Gröbner, C. Zysset, L. Diener, P. Tzoumanikas, A. Kazantzidis, L. Vuilleumier, R. Stöckli, S. Nyeki, and N. Kämpfer (2015) Cloud observations in Switzerland using hemispherical sky cameras, J. Geophys. Res. Atmos, 120, 695-707.

Cloud cameras at the Pierre Auger Observatory

NASA Astrophysics Data System (ADS)

Winnick, Michael G.

2010-06-01

This thesis presents the results of measurements made by infrared cloud cameras installed at the Pierre Auger Observatory in Argentina. These cameras were used to record cloud conditions during operation of the observatory's fluorescence detectors. As cloud may affect the measurement of fluorescence from cosmic ray extensive air showers, the cloud cameras provide a record of which measurements have been interfered with by cloud. Several image processing algorithms were developed, along with a methodology for the detection of cloud within infrared images taken by the cloud cameras. A graphical user interface (GUI) was developed to expediate this, as a large number of images need to be checked for cloud. A cross-check between images recorded by three of the observatory's cloud cameras is presented, along with a comparison with independent cloud measurements made by LIDAR. Despite the cloud cameras and LIDAR observing different areas of the sky, a good agreement is observed in the measured cloud fraction between the two instruments, particularly on very clear and overcast nights. Cloud information recorded by the cloud cameras, with cloud height information measured by the LIDAR, was used to identify those extensive air showers that were obscured by cloud. These events were used to study the effectiveness of standard quality cuts at removing cloud afflicted events. Of all of the standard quality cuts studied in this thesis, the LIDAR cloud fraction cut was the most effective at preferentially removing cloud obscured events. A 'cloudy pixel' veto is also presented, whereby cloud obscured measurements are excluded during the standard hybrid analysis, and new extensive air shower reconstructed parameters determined. The application of such a veto would provide a slight increase to the number of events available for higher level analysis.

Observations of Co-variation in Cloud Properties and their Relationships with Atmospheric State

NASA Astrophysics Data System (ADS)

Sinclair, K.; van Diedenhoven, B.; Fridlind, A. M.; Arnold, T. G.; Yorks, J. E.; Heymsfield, G. M.; McFarquhar, G. M.; Um, J.

2017-12-01

Radiative properties of upper tropospheric ice clouds are generally not well represented in global and cloud models. Cloud top height, cloud thermodynamic phase, cloud optical thickness, cloud water path, particle size and ice crystal shape all serve as observational targets for models to constrain cloud properties. Trends or biases in these cloud properties could have profound effects on the climate since they affect cloud radiative properties. Better understanding of co-variation between these cloud properties and linkages with atmospheric state variables can lead to better representation of clouds in models by reducing biases in their micro- and macro-physical properties as well as their radiative properties. This will also enhance our general understanding of cloud processes. In this analysis we look at remote sensing, in situ and reanalysis data from the MODIS Airborne Simulator (MAS), Cloud Physics Lidar (CPL), Cloud Radar System (CRS), GEOS-5 reanalysis data and GOES imagery obtained during the Tropical Composition, Cloud and Climate Coupling (TC4) airborne campaign. The MAS, CPL and CRS were mounted on the ER-2 high-altitude aircraft during this campaign. In situ observations of ice size and shape were made aboard the DC8 and WB57 aircrafts. We explore how thermodynamic phase, ice effective radius, particle shape and radar reflectivity vary with altitude and also investigate how these observed cloud properties vary with cloud type, cloud top temperature, relative humidity and wind profiles. Observed systematic relationships are supported by physical interpretations of cloud processes and any unexpected differences are examined.

Analysis of albedo versus cloud fraction relationships in liquid water clouds using heuristic models and large eddy simulation

NASA Astrophysics Data System (ADS)

Feingold, Graham; Balsells, Joseph; Glassmeier, Franziska; Yamaguchi, Takanobu; Kazil, Jan; McComiskey, Allison

2017-07-01

The relationship between the albedo of a cloudy scene A and cloud fraction fc is studied with the aid of heuristic models of stratocumulus and cumulus clouds. Existing work has shown that scene albedo increases monotonically with increasing cloud fraction but that the relationship varies from linear to superlinear. The reasons for these differences in functional dependence are traced to the relationship between cloud deepening and cloud widening. When clouds deepen with no significant increase in fc (e.g., in solid stratocumulus), the relationship between A and fc is linear. When clouds widen as they deepen, as in cumulus cloud fields, the relationship is superlinear. A simple heuristic model of a cumulus cloud field with a power law size distribution shows that the superlinear A-fc behavior is traced out either through random variation in cloud size distribution parameters or as the cloud field oscillates between a relative abundance of small clouds (steep slopes on a log-log plot) and a relative abundance of large clouds (flat slopes). Oscillations of this kind manifest in large eddy simulation of trade wind cumulus where the slope and intercept of the power law fit to the cloud size distribution are highly correlated. Further analysis of the large eddy model-generated cloud fields suggests that cumulus clouds grow larger and deeper as their underlying plumes aggregate; this is followed by breakup of large plumes and a tendency to smaller clouds. The cloud and thermal size distributions oscillate back and forth approximately in unison.

Characteristics of tropical clouds using A-train information and their relationships with sea surface temperature

NASA Astrophysics Data System (ADS)

Behrangi, A.; Kubar, T. L.; Lambrigtsen, B.

2011-12-01

Different cloud types have substantially different characteristics in terms of radiative forcing and microphysical properties, both important components of Earth's climate system. Relationships between tropical cloud type characteristics and sea surface temperature (SST) using two-years of A-train data are investigated in this presentation. Stratocumulus clouds are the dominant cloud type over SSTs less than 301K, and in fact their fraction is strongly inversely related to SST. This is physically logical as both static stability and large-scale subsidence scale well with decreasing SST. At SSTs greater than 301K, high clouds are the most abundant cloud type. All cloud types (except nimbostratus and stratocumulus) become sharply more abundant for SSTs greater than a window between 299K and 300.5K, depending on cloud type. The fraction of high, deep convective, altostratus, and altocumulus clouds peak at an SST close to 303K, while cumulus clouds have a broad cloud fraction peak centered near 301K. Deep convective and other high cloud types decrease sharply above SSTs of 303K. While overall early morning clouds are 10% (4%) more frequent than afternoon clouds as indicated by CloudSat (lidar-radar), certain cloud types occur more frequently in the early afternoon, such as high clouds. We also show that a large amount of warm precipitation mainly from stratocumulus clouds is missed or significantly underestimated by the current suite of satellite-based global precipitation measuring sensors. However, the operational sensitivity of Cloudsat cloud profiling radar permits to capture significant fraction of light drizzle and warm rain.

Comparison between SAGE II and ISCCP high-level clouds. 2: Locating clouds tops

NASA Technical Reports Server (NTRS)

Liao, Xiaohan; Rossow, William B.; Rind, David

1995-01-01

A comparison is made of the vertical distribution of high-level cloud tops derived from the Stratospheric Aerosol and Gas Experiment II (SAGE II) occultation measurements and from the International Satellite Cloud Climatology Project (ISCCP) for all Julys and Januarys in 1985 to 1990. The results suggest that ISCCP overestimates the pressure of high-level clouds by up to 50-150 mbar, particularly at low latitudes. This is caused by the frequent presence of clouds with diffuse tops (greater than 50% time when cloudy events are observed). The averaged vertical extent of the diffuse top is about 1.5 km. At midlatitudes where the SAGE II and ISCCP cloud top pressure agree best, clouds with distinct tops reach a maximum relative proportion of the total level cloud amount (about 30-40%), and diffuse-topped clouds are reduced to their minimum (30-40%). The ISCCP-defined cloud top pressure should be regarded not as the material physical height of the clouds but as the level which emits the same infrared radiance as observed. SAGE II and ISCCP cloud top pressures agree for clouds with distinct tops. There is also an indication that the cloud top pressures of optically thin clouds not overlying thicker clouds are poorly estimated by ISCCP at middle latitudes. The average vertical extent of these thin clouds is about 2.5 km.

Observed Aerosol Influence on Ice Water Content of Arctic Mixed-Phase Clouds

NASA Astrophysics Data System (ADS)

Norgren, M.; de Boer, G.; Shupe, M.

2016-12-01

The response of ice water content (IWC) in Arctic mixed-phase stratocumulus to atmospheric aerosols is observed. IWC retrievals from ground based radars operated by the Atmospheric Radiation Measurement (ARM) program in Barrow, Alaska are used to construct composite profiles of cloud IWC from a 9-year radar record starting in January of 2000. The IWC profiles for high (polluted) and low (clean) aerosol loadings are compared. Generally, we find that clean clouds exhibit statistically significant higher levels of IWC than do polluted clouds by a factor of 2-4 at cloud base. For springtime clouds, with a maximum relative humidity with respect to ice (RHI) above 110% in the cloud layer, the IWC at cloud base was a factor of 3.25 times higher in clean clouds than it was in polluted clouds. We infer that the aerosol loading of the cloud environment alters the liquid drop size distribution within the cloud, with larger drops being more frequent in clean clouds. Larger cloud drops promote riming within the cloud layer, which is one explanation for the higher IWC levels in clean clouds. The drop size distribution may also be a significant control of ice nucleation events within mixed-phase clouds. Whether the high IWC levels in clean clouds are due to increased riming or nucleation events is unclear at this time.

Evaluation of AIRS cloud properties using MPACE data

NASA Astrophysics Data System (ADS)

Wu, Xuebao; Li, Jun; Menzel, W. Paul; Huang, Allen; Baggett, Kevin; Revercomb, Henry

2005-12-01

Retrieval of cloud properties from the Atmospheric Infrared Sounder (AIRS) aboard the NASA Aqua satellite has been investigated. The cloud products from the collocated MODerate resolution Imaging Spectroradiometer (MODIS) data are used to characterize the AIRS sub-pixel cloud information such as cloud phase, cloud coverage, and cloud layer information. A Minimum Residual (MR) approach is used to retrieve cloud microphysical properties once the cloud top pressure (CTP) and effective cloud amount (ECA) are determined from AIRS CO2 absorption channels between 720 and 790 cm-1. The cloud microphysical properties can be retrieved by minimizing the differences between the observations and the calculations using AIRS longwave window channels between 790 and 1130 cm-1. AIRS is used to derive cloud properties during the Mixed Phase Arctic Cloud Experiment (MPACE) field campaign. Comparison with measurements obtained from lidar data is made for a test day, showing that AIRS cloud property retrievals agree with in situ lidar observations. Due to the large solar zenith angle, the MODIS operational retrieval approach is not able to provide cloud microphysics north of Barrow, Alaska; however, AIRS provides cloud microphysical properties with its high spectral resolution IR measurements.

Operational implications of a cloud model simulation of space shuttle exhaust clouds in different atmospheric conditions

NASA Technical Reports Server (NTRS)

Zak, J. A.

1989-01-01

A three-dimensional cloud model was used to characterize the dominant influence of the environment on the Space Shuttle exhaust cloud. The model was modified to accept the actual heat and moisture from rocket exhausts and deluge water as initial conditions. An upper-air sounding determined the ambient atmosphere in which the cloud would grow. The model was validated by comparing simulated clouds with observed clouds from four actual Shuttle launches. Results are discussed with operational weather forecasters in mind. The model successfully produced clouds with dimensions, rise, decay, liquid water contents, and vertical motion fields very similar to observed clouds whose dimensions were calculated from 16 mm film frames. Once validated, the model was used in a number of different atmospheric conditions ranging from very unstable to very stable. Wind shear strongly affected the appearance of both the ground cloud and vertical column cloud. The ambient low-level atmospheric moisture governed the amount of cloud water in model clouds. Some dry atmospheres produced little or no cloud water. An empirical forecast technique for Shuttle cloud rise is presented and differences between natural atmospheric convection and exhaust clouds are discussed.

Re-evaluating the Cloud Lifetime Effect: Does Precipitation Suppression Always Lead to an Increased Cloud Extent in Warm Clouds?

NASA Astrophysics Data System (ADS)

Douglas, A.; L'Ecuyer, T.

2017-12-01

Aerosol influences on cloud lifetime remain a poorly understood pathway of aerosol-cloud-radiation interaction with large margins of error according to the fifth IPCC report. Increases in cloud lifetime are attributed to changes in cloud extent due to the suppression of precipitation by increased aerosol concentrations. The dependence of changes in cloud fraction and probability of precipitation on aerosol perturbations for controlled cloud regimes will be investigated using A-Train measurements. CloudSat, MODIS, and AMSR-E measurements from 2006 to 2010 are sorted into regimes established using stability to describe local meteorology, and relative humidity and liquid water path to describe cloud morphology. Holding the thermodynamic and meteorological environments constant allows variations in precipitation and cloud extent owing to regime-specific cloud lifetime effects to be attributed to aerosol perturbations. The relationship between precipitation suppression, cloud extent, and liquid water path will be analyzed. The cloud lifetime effect will be constrained using regimes in the hopes of improving our understanding of precipitation-aerosol interactions.

An efficient framework for modeling clouds from Landsat8 images

NASA Astrophysics Data System (ADS)

Yuan, Chunqiang; Guo, Jing

2015-03-01

Cloud plays an important role in creating realistic outdoor scenes for video game and flight simulation applications. Classic methods have been proposed for cumulus cloud modeling. However, these methods are not flexible for modeling large cloud scenes with hundreds of clouds in that the user must repeatedly model each cloud and adjust its various properties. This paper presents a meteorologically based method to reconstruct cumulus clouds from high resolution Landsat8 satellite images. From these input satellite images, the clouds are first segmented from the background. Then, the cloud top surface is estimated from the temperature of the infrared image. After that, under a mild assumption of flat base for cumulus cloud, the base height of each cloud is computed by averaging the top height for pixels on the cloud edge. Then, the extinction is generated from the visible image. Finally, we enrich the initial shapes of clouds using a fractal method and represent the recovered clouds as a particle system. The experimental results demonstrate our method can yield realistic cloud scenes resembling those in the satellite images.

Improvements in Night-Time Low Cloud Detection and MODIS-Style Cloud Optical Properties from MSG SEVIRI

NASA Technical Reports Server (NTRS)

Wind, Galina (Gala); Platnick, Steven; Riedi, Jerome

2011-01-01

The MODIS cloud optical properties algorithm (MOD06IMYD06 for Terra and Aqua MODIS, respectively) slated for production in Data Collection 6 has been adapted to execute using available channels on MSG SEVIRI. Available MODIS-style retrievals include IR Window-derived cloud top properties, using the new Collection 6 cloud top properties algorithm, cloud optical thickness from VISINIR bands, cloud effective radius from 1.6 and 3.7Jlm and cloud ice/water path. We also provide pixel-level uncertainty estimate for successful retrievals. It was found that at nighttime the SEVIRI cloud mask tends to report unnaturally low cloud fraction for marine stratocumulus clouds. A correction algorithm that improves detection of such clouds has been developed. We will discuss the improvements to nighttime low cloud detection for SEVIRI and show examples and comparisons with MODIS and CALIPSO. We will also show examples of MODIS-style pixel-level (Level-2) cloud retrievals for SEVIRI with comparisons to MODIS.

Effects of cloud size and cloud particles on satellite-observed reflected brightness

NASA Technical Reports Server (NTRS)

Reynolds, D. W.; Mckee, T. B.; Danielson, K. S.

1978-01-01

Satellite observations allowed obtaining data on the visible brightness of cumulus clouds over South Park, Colorado, while aircraft observations were made in cloud to obtain the drop size distributions and liquid water content of the cloud. Attention is focused on evaluating the relationship between cloud brightness, horizontal dimension, and internal microphysical structure. A Monte Carlo cloud model for finite clouds was run using different distributions of drop sizes and numbers, while varying the cloud depth and width to determine how theory would predict what the satellite would view from its given location in space. Comparison of these results to the satellite observed reflectances is presented. Theoretical results are found to be in good agreement with observations. For clouds of optical thickness between 20 and 60, monitoring cloud brightness changes in clouds of uniform depth and variable width gives adequate information about a cloud's liquid water content. A cloud having a 10:1 width to depth ratio is almost reaching its maximum brightness for a specified optical thickness.

AirMSPI ORACLES Cloud Droplet Data V001

Atmospheric Science Data Center

2018-05-05

AirMSPI_ORACLES_Cloud_Droplet_Size_and_Cloud_Optical_Depth L2 Derived Geophysical Parameters ... Order: Earthdata Search Parameters:  Cloud Optical Depth Cloud Droplet Effective Radius Cloud Droplet ...

Influence of Subpixel Scale Cloud Top Structure on Reflectances from Overcast Stratiform Cloud Layers

NASA Technical Reports Server (NTRS)

Loeb, N. G.; Varnai, Tamas; Winker, David M.

1998-01-01

Recent observational studies have shown that satellite retrievals of cloud optical depth based on plane-parallel model theory suffer from systematic biases that depend on viewing geometry, even when observations are restricted to overcast marine stratus layers, arguably the closest to plane parallel in nature. At moderate to low sun elevations, the plane-parallel model significantly overestimates the reflectance dependence on view angle in the forward-scattering direction but shows a similar dependence in the backscattering direction. Theoretical simulations are performed that show that the likely cause for this discrepancy is because the plane-parallel model assumption does not account for subpixel, scale variations in cloud-top height (i.e., "cloud bumps"). Monte Carlo simulation, comparing ID model radiances to radiances from overcast cloud field with 1) cloud-top height variation, but constant cloud volume extinction; 2) flat tops but horizontal variations in cloud volume extinction; and 3) variations in both cloud top height and cloud extinction are performed over a approximately equal to 4 km x 4 km domain (roughly the size of an individual GAC AVHRR pixel). The comparisons show that when cloud-top height variations are included, departures from 1D theory are remarkably similar (qualitatively) to those obtained observationally. In contrast, when clouds are assumed flat and only cloud extinction is variable, reflectance differences are much smaller and do not show any view-angle dependence. When both cloud-top height and cloud extinction variations are included, however, large increases in cloud extinction variability can enhance reflectance difference. The reason 3D-1D reflectance differences are more sensitive to cloud-top height variations in the forward-scattering direction (at moderate to low, sun elevations) is because photons leaving the cloud field in that direction experience fewer scattering events (low-order scattering) and are restricted to the topmost portions of the cloud. While reflectance deviations from 1D theory are much larger for bumpy clouds than for flat clouds with variable cloud extinction, differences in cloud albedo are comparable for these two cases.

Low-Cloud Feedbacks from Cloud-Controlling Factors: A Review

DOE PAGES

Klein, Stephen A.; Hall, Alex; Norris, Joel R.; ...

2017-10-24

Here, the response to warming of tropical low-level clouds including both marine stratocumulus and trade cumulus is a major source of uncertainty in projections of future climate. Climate model simulations of the response vary widely, reflecting the difficulty the models have in simulating these clouds. These inadequacies have led to alternative approaches to predict low-cloud feedbacks. Here, we review an observational approach that relies on the assumption that observed relationships between low clouds and the “cloud-controlling factors” of the large-scale environment are invariant across time-scales. With this assumption, and given predictions of how the cloud-controlling factors change with climate warming,more » one can predict low-cloud feedbacks without using any model simulation of low clouds. We discuss both fundamental and implementation issues with this approach and suggest steps that could reduce uncertainty in the predicted low-cloud feedback. Recent studies using this approach predict that the tropical low-cloud feedback is positive mainly due to the observation that reflection of solar radiation by low clouds decreases as temperature increases, holding all other cloud-controlling factors fixed. The positive feedback from temperature is partially offset by a negative feedback from the tendency for the inversion strength to increase in a warming world, with other cloud-controlling factors playing a smaller role. A consensus estimate from these studies for the contribution of tropical low clouds to the global mean cloud feedback is 0.25 ± 0.18 W m –2 K –1 (90% confidence interval), suggesting it is very unlikely that tropical low clouds reduce total global cloud feedback. Because the prediction of positive tropical low-cloud feedback with this approach is consistent with independent evidence from low-cloud feedback studies using high-resolution cloud models, progress is being made in reducing this key climate uncertainty.« less

Low-Cloud Feedbacks from Cloud-Controlling Factors: A Review

DOE Office of Scientific and Technical Information (OSTI.GOV)

Klein, Stephen A.; Hall, Alex; Norris, Joel R.

Here, the response to warming of tropical low-level clouds including both marine stratocumulus and trade cumulus is a major source of uncertainty in projections of future climate. Climate model simulations of the response vary widely, reflecting the difficulty the models have in simulating these clouds. These inadequacies have led to alternative approaches to predict low-cloud feedbacks. Here, we review an observational approach that relies on the assumption that observed relationships between low clouds and the “cloud-controlling factors” of the large-scale environment are invariant across time-scales. With this assumption, and given predictions of how the cloud-controlling factors change with climate warming,more » one can predict low-cloud feedbacks without using any model simulation of low clouds. We discuss both fundamental and implementation issues with this approach and suggest steps that could reduce uncertainty in the predicted low-cloud feedback. Recent studies using this approach predict that the tropical low-cloud feedback is positive mainly due to the observation that reflection of solar radiation by low clouds decreases as temperature increases, holding all other cloud-controlling factors fixed. The positive feedback from temperature is partially offset by a negative feedback from the tendency for the inversion strength to increase in a warming world, with other cloud-controlling factors playing a smaller role. A consensus estimate from these studies for the contribution of tropical low clouds to the global mean cloud feedback is 0.25 ± 0.18 W m –2 K –1 (90% confidence interval), suggesting it is very unlikely that tropical low clouds reduce total global cloud feedback. Because the prediction of positive tropical low-cloud feedback with this approach is consistent with independent evidence from low-cloud feedback studies using high-resolution cloud models, progress is being made in reducing this key climate uncertainty.« less

Cloud-Resolving Model Simulations of Aerosol-Cloud Interactions Triggered by Strong Aerosol Emissions in the Arctic

NASA Astrophysics Data System (ADS)

Wang, H.; Kravitz, B.; Rasch, P. J.; Morrison, H.; Solomon, A.

2014-12-01

Previous process-oriented modeling studies have highlighted the dependence of effectiveness of cloud brightening by aerosols on cloud regimes in warm marine boundary layer. Cloud microphysical processes in clouds that contain ice, and hence the mechanisms that drive aerosol-cloud interactions, are more complicated than in warm clouds. Interactions between ice particles and liquid drops add additional levels of complexity to aerosol effects. A cloud-resolving model is used to study aerosol-cloud interactions in the Arctic triggered by strong aerosol emissions, through either geoengineering injection or concentrated sources such as shipping and fires. An updated cloud microphysical scheme with prognostic aerosol and cloud particle numbers is employed. Model simulations are performed in pure super-cooled liquid and mixed-phase clouds, separately, with or without an injection of aerosols into either a clean or a more polluted Arctic boundary layer. Vertical mixing and cloud scavenging of particles injected from the surface is still quite efficient in the less turbulent cold environment. Overall, the injection of aerosols into the Arctic boundary layer can delay the collapse of the boundary layer and increase low-cloud albedo. The pure liquid clouds are more susceptible to the increase in aerosol number concentration than the mixed-phase clouds. Rain production processes are more effectively suppressed by aerosol injection, whereas ice precipitation (snow) is affected less; thus the effectiveness of brightening mixed-phase clouds is lower than for liquid-only clouds. Aerosol injection into a clean boundary layer results in a greater cloud albedo increase than injection into a polluted one, consistent with current knowledge about aerosol-cloud interactions. Unlike previous studies investigating warm clouds, the impact of dynamical feedback due to precipitation changes is small. According to these results, which are dependent upon the representation of ice nucleation processes in the employed microphysical scheme, Arctic geoengineering/shipping could have substantial local radiative effects, but is unlikely to be effective as the sole means of counterbalancing warming due to climate change.

Contrasting cloud composition between coupled and decoupled marine boundary layer clouds

NASA Astrophysics Data System (ADS)

Wang, Zhen; Mora Ramirez, Marco; Dadashazar, Hossein; MacDonald, Alex B.; Crosbie, Ewan; Bates, Kelvin H.; Coggon, Matthew M.; Craven, Jill S.; Lynch, Peng; Campbell, James R.; Azadi Aghdam, Mojtaba; Woods, Roy K.; Jonsson, Haflidi; Flagan, Richard C.; Seinfeld, John H.; Sorooshian, Armin

2016-10-01

Marine stratocumulus clouds often become decoupled from the vertical layer immediately above the ocean surface. This study contrasts cloud chemical composition between coupled and decoupled marine stratocumulus clouds for dissolved nonwater substances. Cloud water and droplet residual particle composition were measured in clouds off the California coast during three airborne experiments in July-August of separate years (Eastern Pacific Emitted Aerosol Cloud Experiment 2011, Nucleation in California Experiment 2013, and Biological and Oceanic Atmospheric Study 2015). Decoupled clouds exhibited significantly lower air-equivalent mass concentrations in both cloud water and droplet residual particles, consistent with reduced cloud droplet number concentration and subcloud aerosol (Dp > 100 nm) number concentration, owing to detachment from surface sources. Nonrefractory submicrometer aerosol measurements show that coupled clouds exhibit higher sulfate mass fractions in droplet residual particles, owing to more abundant precursor emissions from the ocean and ships. Consequently, decoupled clouds exhibited higher mass fractions of organics, nitrate, and ammonium in droplet residual particles, owing to effects of long-range transport from more distant sources. Sodium and chloride dominated in terms of air-equivalent concentration in cloud water for coupled clouds, and their mass fractions and concentrations exceeded those in decoupled clouds. Conversely, with the exception of sea-salt constituents (e.g., Cl, Na, Mg, and K), cloud water mass fractions of all species examined were higher in decoupled clouds relative to coupled clouds. Satellite and Navy Aerosol Analysis and Prediction System-based reanalysis data are compared with each other, and the airborne data to conclude that limitations in resolving boundary layer processes in a global model prevent it from accurately quantifying observed differences between coupled and decoupled cloud composition.

Comparison of cloud top heights derived from FY-2 meteorological satellites with heights derived from ground-based millimeter wavelength cloud radar

NASA Astrophysics Data System (ADS)

Wang, Zhe; Wang, Zhenhui; Cao, Xiaozhong; Tao, Fa

2018-01-01

Clouds are currently observed by both ground-based and satellite remote sensing techniques. Each technique has its own strengths and weaknesses depending on the observation method, instrument performance and the methods used for retrieval. It is important to study synergistic cloud measurements to improve the reliability of the observations and to verify the different techniques. The FY-2 geostationary orbiting meteorological satellites continuously observe the sky over China. Their cloud top temperature product can be processed to retrieve the cloud top height (CTH). The ground-based millimeter wavelength cloud radar can acquire information about the vertical structure of clouds-such as the cloud base height (CBH), CTH and the cloud thickness-and can continuously monitor changes in the vertical profiles of clouds. The CTHs were retrieved using both cloud top temperature data from the FY-2 satellites and the cloud radar reflectivity data for the same time period (June 2015 to May 2016) and the resulting datasets were compared in order to evaluate the accuracy of CTH retrievals using FY-2 satellites. The results show that the concordance rate of cloud detection between the two datasets was 78.1%. Higher consistencies were obtained for thicker clouds with larger echo intensity and for more continuous clouds. The average difference in the CTH between the two techniques was 1.46 km. The difference in CTH between low- and mid-level clouds was less than that for high-level clouds. An attenuation threshold of the cloud radar for rainfall was 0.2 mm/min; a rainfall intensity below this threshold had no effect on the CTH. The satellite CTH can be used to compensate for the attenuation error in the cloud radar data.

Retrieval of radiative and microphysical properties of clouds from multispectral infrared measurements

NASA Astrophysics Data System (ADS)

Iwabuchi, Hironobu; Saito, Masanori; Tokoro, Yuka; Putri, Nurfiena Sagita; Sekiguchi, Miho

2016-12-01

Satellite remote sensing of the macroscopic, microphysical, and optical properties of clouds are useful for studying spatial and temporal variations of clouds at various scales and constraining cloud physical processes in climate and weather prediction models. Instead of using separate independent algorithms for different cloud properties, a unified, optimal estimation-based cloud retrieval algorithm is developed and applied to moderate resolution imaging spectroradiometer (MODIS) observations using ten thermal infrared bands. The model considers sensor configurations, background surface and atmospheric profile, and microphysical and optical models of ice and liquid cloud particles and radiative transfer in a plane-parallel, multilayered atmosphere. Measurement and model errors are thoroughly quantified from direct comparisons of clear-sky observations over the ocean with model calculations. Performance tests by retrieval simulations show that ice cloud properties are retrieved with high accuracy when cloud optical thickness (COT) is between 0.1 and 10. Cloud-top pressure is inferred with uncertainty lower than 10 % when COT is larger than 0.3. Applying the method to a tropical cloud system and comparing the results with the MODIS Collection 6 cloud product shows good agreement for ice cloud optical thickness when COT is less than about 5. Cloud-top height agrees well with estimates obtained by the CO2 slicing method used in the MODIS product. The present algorithm can detect optically thin parts at the edges of high clouds well in comparison with the MODIS product, in which these parts are recognized as low clouds by the infrared window method. The cloud thermodynamic phase in the present algorithm is constrained by cloud-top temperature, which tends not to produce results with an ice cloud that is too warm and liquid cloud that is too cold.

A comparison of shock-cloud and wind-cloud interactions: effect of increased cloud density contrast on cloud evolution

NASA Astrophysics Data System (ADS)

Goldsmith, K. J. A.; Pittard, J. M.

2018-05-01

The similarities, or otherwise, of a shock or wind interacting with a cloud of density contrast χ = 10 were explored in a previous paper. Here, we investigate such interactions with clouds of higher density contrast. We compare the adiabatic hydrodynamic interaction of a Mach 10 shock with a spherical cloud of χ = 103 with that of a cloud embedded in a wind with identical parameters to the post-shock flow. We find that initially there are only minor morphological differences between the shock-cloud and wind-cloud interactions, compared to when χ = 10. However, once the transmitted shock exits the cloud, the development of a turbulent wake and fragmentation of the cloud differs between the two simulations. On increasing the wind Mach number, we note the development of a thin, smooth tail of cloud material, which is then disrupted by the fragmentation of the cloud core and subsequent `mass-loading' of the flow. We find that the normalized cloud mixing time (tmix) is shorter at higher χ. However, a strong Mach number dependence on tmix and the normalized cloud drag time, t_{drag}^' }, is not observed. Mach-number-dependent values of tmix and t_{drag}^' } from comparable shock-cloud interactions converge towards the Mach-number-independent time-scales of the wind-cloud simulations. We find that high χ clouds can be accelerated up to 80-90 per cent of the wind velocity and travel large distances before being significantly mixed. However, complete mixing is not achieved in our simulations and at late times the flow remains perturbed.

A Study of the Vertical Structure of Tropical (20 deg S-20 deg N) Optically Thin Clouds from SAGE II Observations

NASA Technical Reports Server (NTRS)

Wang, Pi-Huan; Minnis, Patrick; McCormick, M. Patrick; Kent, Geoffrey S.; Yue, Glenn K.; Young, David F.; Skeens, Kristi M.

1998-01-01

The tropical cloud data obtained by the satellite instrument of the Stratospheric Aerosol and Gas Experiment (SAGE) II from October 1984 to May 1991 have been used to study cloud vertical distribution, including thickness and multilayer structure, and to estimate cloud optical depth. The results indicate that the SAGE-II-observed clouds are generally optically thin clouds, corresponding to a range of optical depth between approximately 8 x 10(exp -4) and 3 x 10(exp -1) with a mean of about 0.035. Two-thirds are classified as subvisual cirrus and one-third thin cirrus. Clouds between 2- to 3-km thick occur most frequently. Approximately 30% of the SAGE II cloud measurements are isolated single-layer clouds, while 65% are high clouds contiguous with an underlying opaque cloud that terminates the SAGE II profile. Thin clouds above detached opaque clouds at altitudes greater than 6.5 km occur less often. Only about 3% of the SAGE II single-layer clouds are located above the tropopause, while 58% of the cloud layers never reach the tropopause. More than one-third of the clouds appear at the tropopause. This study also shows that clouds occur more frequently and extend higher above the tropopause over the western Pacific than than over the eastern Pacific, especially during northern winter. The uncertainty of the derived results due to the SAGE II sampling constraints, data processing, and cloud characteristics is discussed.

Assessment of dust aerosol effect on cloud properties over Northwest China using CERES SSF data

NASA Astrophysics Data System (ADS)

Huang, J.; Wang, X.; Wang, T.; Su, J.; Minnis, P.; Lin, B.; Hu, Y.; Yi, Y.

Dust aerosols not only have direct effects on the climate through reflection and absorption of the short and long wave radiation but also modify cloud properties such as the number concentration and size of cloud droplets indirect effect and contribute to diabatic heating in the atmosphere that often enhances cloud evaporation and reduces the cloud water path In this study indirect and semi-direct effects of dust aerosols are analyzed over eastern Asia using two years June 2002 to June 2004 of CERES Clouds and the Earth s Radiant Energy Budget Scanner and MODIS MODerate Resolution Imaging Spectroradiometer Aqua Edition 1B SSF Single Scanner Footprint data sets The statistical analysis shows evidence for both indirect and semi-direct effect of Asia dust aerosols The dust appears to reduce the ice cloud effective particle diameter and increase high cloud amount On average ice cloud effective particle diameters of cirrus clouds under dust polluted conditions dusty cloud are 11 smaller than those derived from ice clouds in dust-free atmospheric environments The water paths of dusty clouds are also considerably smaller than those of dust-free clouds Dust aerosols could warm clouds thereby increasing the evaporation of cloud droplets resulting in reduced cloud water path semi-direct effect The semi-direct effect may be dominated the interaction between dust aerosols and clouds over arid and semi-arid areas and partly contribute to reduced precipitation

Determination of Ice Cloud Models Using MODIS and MISR Data

NASA Technical Reports Server (NTRS)

Xie, Yu; Yang, Ping; Kattawar, George W.; Minnis, Patrick; Hu, Yongxiang; Wu, Dong L.

2012-01-01

Representation of ice clouds in radiative transfer simulations is subject to uncertainties associated with the shapes and sizes of ice crystals within cirrus clouds. In this study, we examined several ice cloud models consisting of smooth, roughened, homogeneous and inhomogeneous hexagonal ice crystals with various aspect ratios. The sensitivity of the bulk scattering properties and solar reflectances of cirrus clouds to specific ice cloud models is investigated using the improved geometric optics method (IGOM) and the discrete ordinates radiative transfer (DISORT) model. The ice crystal habit fractions in the ice cloud model may significantly affect the simulations of cloud reflectances. A new algorithm was developed to help determine an appropriate ice cloud model for application to the satellite-based retrieval of ice cloud properties. The ice cloud particle size retrieved from Moderate Resolution Imaging Spectroradiometer (MODIS) data, collocated with Multi-angle Imaging Spectroradiometer (MISR) observations, is used to infer the optical thicknesses of ice clouds for nine MISR viewing angles. The relative differences between view-dependent cloud optical thickness and the averaged value over the nine MISR viewing angles can vary from -0.5 to 0.5 and are used to evaluate the ice cloud models. In the case for 2 July 2009, the ice cloud model with mixed ice crystal habits is the best fit to the observations (the root mean square (RMS) error of cloud optical thickness reaches 0.365). This ice cloud model also produces consistent cloud property retrievals for the nine MISR viewing configurations within the measurement uncertainties.

EntrezAJAX: direct web browser access to the Entrez Programming Utilities.

PubMed

Loman, Nicholas J; Pallen, Mark J

2010-06-21

Web applications for biology and medicine often need to integrate data from Entrez services provided by the National Center for Biotechnology Information. However, direct access to Entrez from a web browser is not possible due to 'same-origin' security restrictions. The use of "Asynchronous JavaScript and XML" (AJAX) to create rich, interactive web applications is now commonplace. The ability to access Entrez via AJAX would be advantageous in the creation of integrated biomedical web resources. We describe EntrezAJAX, which provides access to Entrez eUtils and is able to circumvent same-origin browser restrictions. EntrezAJAX is easily implemented by JavaScript developers and provides identical functionality as Entrez eUtils as well as enhanced functionality to ease development. We provide easy-to-understand developer examples written in JavaScript to illustrate potential uses of this service. For the purposes of speed, reliability and scalability, EntrezAJAX has been deployed on Google App Engine, a freely available cloud service. The EntrezAJAX webpage is located at http://entrezajax.appspot.com/

Whatever Happened to Formal Methods for Security?

PubMed Central

Voas, J.; Schaffer, K.

2016-01-01

We asked 7 experts 7 questions to find out what has occurred recently in terms of applying formal methods (FM) to security-centric, cyber problems. We are continually reminded of the 1996 paper by Tony Hoare “How did Software Get So Reliable Without Proof?” [1] In that vein, how did we get so insecure with proof? Given daily press announcements concerning new malware, data breaches, and privacy loss, is FM still relevant or was it ever? Our experts answered with unique personal insights. We were curious as to whether this successful methodology in “safety-critical” has succeeded as well for today’s “build it, hack it, patch it” mindset. Our experts were John McLean (Naval Research Labs), Paul Black (National Institute of Standards and Technology), Karl Levitt (University of California at Davis), Joseph Williams (CloudEconomist.Com), Connie Heitmeyer (Naval Research Labs), Eugene Spafford (Purdue University), and Joseph Kiniry (Galois, Inc.). The questions and responses follow. PMID:27890940

Burst around the Corner

NASA Image and Video Library

2017-12-08

NASA image captured January 2, 2012 To view a video of this event go here: www.flickr.com/photos/gsfc/6648724193 The Sun erupted with a good-sized solar flare and a coronal mass ejection (CME) on its far-side beyond the view of SDO, but the resulting strands of particle clouds as seen in extreme ultraviolet light still made for quite a show that lasted about three hours (Jan. 2, 2011). Note how a portion of the strands fall back to the Sun. It appears the force of the blast was unable, for some portion of the material, to overcome the pull of the Sun's magnetic fields. This blast was not directed at Earth. Credit: NASA/GSFC/SDO NASA image use policy. NASA Goddard Space Flight Center enables NASA’s mission through four scientific endeavors: Earth Science, Heliophysics, Solar System Exploration, and Astrophysics. Goddard plays a leading role in NASA’s accomplishments by contributing compelling scientific knowledge to advance the Agency’s mission. Follow us on Twitter Like us on Facebook Find us on Instagram

Aerosols, clouds, and precipitation in the North Atlantic trades observed during the Barbados aerosol cloud experiment - Part 1: Distributions and variability

NASA Astrophysics Data System (ADS)

Jung, Eunsil; Albrecht, Bruce A.; Feingold, Graham; Jonsson, Haflidi H.; Chuang, Patrick; Donaher, Shaunna L.

2016-07-01

Shallow marine cumulus clouds are by far the most frequently observed cloud type over the Earth's oceans; but they are poorly understood and have not been investigated as extensively as stratocumulus clouds. This study describes and discusses the properties and variations of aerosol, cloud, and precipitation associated with shallow marine cumulus clouds observed in the North Atlantic trades during a field campaign (Barbados Aerosol Cloud Experiment- BACEX, March-April 2010), which took place off Barbados where African dust periodically affects the region. The principal observing platform was the Center for Interdisciplinary Remotely Piloted Aircraft Studies (CIRPAS) Twin Otter (TO) research aircraft, which was equipped with standard meteorological instruments, a zenith pointing cloud radar and probes that measured aerosol, cloud, and precipitation characteristics.The temporal variation and vertical distribution of aerosols observed from the 15 flights, which included the most intense African dust event during all of 2010 in Barbados, showed a wide range of aerosol conditions. During dusty periods, aerosol concentrations increased substantially in the size range between 0.5 and 10 µm (diameter), particles that are large enough to be effective giant cloud condensation nuclei (CCN). The 10-day back trajectories showed three distinct air masses with distinct vertical structures associated with air masses originating in the Atlantic (typical maritime air mass with relatively low aerosol concentrations in the marine boundary layer), Africa (Saharan air layer), and mid-latitudes (continental pollution plumes). Despite the large differences in the total mass loading and the origin of the aerosols, the overall shapes of the aerosol particle size distributions were consistent, with the exception of the transition period.The TO was able to sample many clouds at various phases of growth. Maximum cloud depth observed was less than ˜ 3 km, while most clouds were less than 1 km deep. Clouds tend to precipitate when the cloud is thicker than 500-600 m. Distributions of cloud field characteristics (depth, radar reflectivity, Doppler velocity, precipitation) were well identified in the reflectivity-velocity diagram from the cloud radar observations. Two types of precipitation features were observed for shallow marine cumulus clouds that may impact boundary layer differently: first, a classic cloud-base precipitation where precipitation shafts were observed to emanate from the cloud base; second, cloud-top precipitation where precipitation shafts emanated mainly near the cloud tops, sometimes accompanied by precipitation near the cloud base. The second type of precipitation was more frequently observed during the experiment. Only 42-44 % of the clouds sampled were non-precipitating throughout the entire cloud layer and the rest of the clouds showed precipitation somewhere in the cloud, predominantly closer to the cloud top.

On the existence of tropical anvil clouds

NASA Astrophysics Data System (ADS)

Seeley, J.; Jeevanjee, N.; Langhans, W.; Romps, D.

2017-12-01

In the deep tropics, extensive anvil clouds produce a peak in cloud cover below the tropopause. The dominant paradigm for cloud cover attributes this anvil peak to a layer of enhanced mass convergence in the clear-sky upper-troposphere, which is presumed to force frequent detrainment of convective anvils. However, cloud cover also depends on the lifetime of cloudy air after it detrains, which raises the possibility that anvil clouds may be the signature of slow cloud decay rather than enhanced detrainment. Here we measure the cloud decay timescale in cloud-resolving simulations, and find that cloudy updrafts that detrain in the upper troposphere take much longer to dissipate than their shallower counterparts. We show that cloud lifetimes are long in the upper troposphere because the saturation specific humidity becomes orders of magnitude smaller than the typical condensed water loading of cloudy updrafts. This causes evaporative cloud decay to act extremely slowly, thereby prolonging cloud lifetimes in the upper troposphere. As a consequence, extensive anvil clouds still occur in a convecting atmosphere that is forced to have no preferential clear-sky convergence layer. On the other hand, when cloud lifetimes are fixed at a characteristic lower-tropospheric value, extensive anvil clouds do not form. Our results support a revised understanding of tropical anvil clouds, which attributes their existence to the microphysics of slow cloud decay rather than a peak in clear-sky convergence.

Variation of z-height of the molecular clouds on the Galactic Plane

NASA Astrophysics Data System (ADS)

Lee, Y.; Stark, A. A.

2002-12-01

Using the Bell Laboratories Galactic plane in the J=1-0 transition of 13CO, (l, b) = (-5o to 117o, -1o to +1o), and cloud identification code, 13CO clouds have been identified and cataloged as a function of threshold temperature. Distance estimates to the identified clouds have been made with several criteria. Minimum and maximum distances to each identified cloud are determined from a set of all the possible distances of a cloud. Several physical parameters can be determined with distances, such as z-height [D sin (b)], CO luminosity, virial mass and so forth. We select the clouds with a ratio of maximum and minimum of CO luminosities less than 3. The number of selected clouds is 281 out of 1400 identified clouds with 1 K threshold temperature. These clouds are mostly located on the tangential positions in the inner Galaxy, and some are in the Outer Galaxy. It is found that the z-height of lower luminosity clouds (less massive clouds) is systimatically larger than that of high-luminosity clouds (more massive clouds). We claim that this is the first observational evidence of the z-height variation depending on the luminosities (or masses) of molecular clouds on the Galactic plane. Our results could be a basis explaining the formation mechanism of massive clouds, such as giant molecular clouds.

ISCCP Cloud Properties Associated with Standard Cloud Types Identified in Individual Surface Observations

NASA Technical Reports Server (NTRS)

Hahn, Carole J.; Rossow, William B.; Warren, Stephen G.

1999-01-01

Individual surface weather observations from land stations and ships are compared with individual cloud retrievals of the International Satellite Cloud Climatology Project (ISCCP), Stage C1, for an 8-year period (1983-1991) to relate cloud optical thicknesses and cloud-top pressures obtained from satellite data to the standard cloud types reported in visual observations from the surface. Each surface report is matched to the corresponding ISCCP-C1 report for the time of observation for the 280x280-km grid-box containing that observation. Classes of the surface reports are identified in which a particular cloud type was reported present, either alone or in combination with other clouds. For each class, cloud amounts from both surface and C1 data, base heights from surface data, and the frequency-distributions of cloud-top pressure (p(sub c) and optical thickness (tau) from C1 data are averaged over 15-degree latitude zones, for land and ocean separately, for 3-month seasons. The frequency distribution of p(sub c) and tau is plotted for each of the surface-defined cloud types occurring both alone and with other clouds. The average cloud-top pressures within a grid-box do not always correspond well with values expected for a reported cloud type, particularly for the higher clouds Ci, Ac, and Cb. In many cases this is because the satellites also detect clouds within the grid-box that are outside the field of view of the surface observer. The highest average cloud tops are found for the most extensive cloud type, Ns, averaging 7 km globally and reaching 9 km in the ITCZ. Ns also has the greatest average retrieved optical thickness, tau approximately equal 20. Cumulonimbus clouds may actually attain far greater heights and depths, but do not fill the grid-box. The tau-p(sub c) distributions show features that distinguish the high, middle, and low clouds reported by the surface observers. However, the distribution patterns for the individual low cloud types (Cu, Sc, St) occurring alone overlap to such an extent that it is not possible to distinguish these cloud types from each other on the basis of tau-p(sub c) values alone. Other cloud types whose tau-p(sub c) distributions are indistinguishable are Cb, Ns, and thick As. However, the tau-p(sub c) distribution patterns for the different low cloud types are nevertheless distinguishable when all occurrences of a low cloud type are included, indicating that the different low types differ in their probabilities of co-occurrence with middle and high clouds.

Results from the Two-Year Infrared Cloud Imager Deployment at ARM's NSA Observatory in Barrow, Alaska

NASA Astrophysics Data System (ADS)

Shaw, J. A.; Nugent, P. W.

2016-12-01

Ground-based longwave-infrared (LWIR) cloud imaging can provide continuous cloud measurements in the Arctic. This is of particular importance during the Arctic winter when visible wavelength cloud imaging systems cannot operate. This method uses a thermal infrared camera to observe clouds and produce measurements of cloud amount and cloud optical depth. The Montana State University Optical Remote Sensor Laboratory deployed an infrared cloud imager (ICI) at the Atmospheric Radiation Monitoring North Slope of Alaska site at Barrow, AK from July 2012 through July 2014. This study was used to both understand the long-term operation of an ICI in the Arctic and to study the consistency of the ICI data products in relation to co-located active and passive sensors. The ICI was found to have a high correlation (> 0.92) with collocated cloud instruments and to produce an unbiased data product. However, the ICI also detects thin clouds that are not detected by most operational cloud sensors. Comparisons with high-sensitivity actively sensed cloud products confirm the existence of these thin clouds. Infrared cloud imaging systems can serve a critical role in developing our understanding of cloud cover in the Arctic by provided a continuous annual measurement of clouds at sites of interest.

Characteristic Vertical Profiles of Cloud Water Composition in Marine Stratocumulus Clouds and Relationships With Precipitation

NASA Astrophysics Data System (ADS)

MacDonald, Alexander B.; Dadashazar, Hossein; Chuang, Patrick Y.; Crosbie, Ewan; Wang, Hailong; Wang, Zhen; Jonsson, Haflidi H.; Flagan, Richard C.; Seinfeld, John H.; Sorooshian, Armin

2018-04-01

This study uses airborne cloud water composition measurements to characterize the vertical structure of air-equivalent mass concentrations of water-soluble species in marine stratocumulus clouds off the California coast. A total of 385 cloud water samples were collected in the months of July and August between 2011 and 2016 and analyzed for water-soluble ionic and elemental composition. Three characteristic profiles emerge: (i) a reduction of concentration with in-cloud altitude for particulate species directly emitted from sources below cloud without in-cloud sources (e.g., Cl- and Na+), (ii) an increase of concentration with in-cloud altitude (e.g., NO2- and formate), and (iii) species exhibiting a peak in concentration in the middle of cloud (e.g., non-sea-salt SO42-, NO3-, and organic acids). Vertical profiles of rainout parameters such as loss frequency, lifetime, and change in concentration with respect to time show that the scavenging efficiency throughout the cloud depth depends strongly on the thickness of the cloud. Thin clouds exhibit a greater scavenging loss frequency at cloud top, while thick clouds have a greater scavenging loss frequency at cloud base. The implications of these results for treatment of wet scavenging in models are discussed.

Characteristic Vertical Profiles of Cloud Water Composition in Marine Stratocumulus Clouds and Relationships With Precipitation

DOE Office of Scientific and Technical Information (OSTI.GOV)

MacDonald, Alexander B.; Dadashazar, Hossein; Chuang, Patrick Y.

This study uses airborne cloud water composition measurements to characterize the vertical structure of air-equivalent mass concentrations of water-soluble species in marine stratocumulus clouds off the California coast. A total of 385 cloud water samples were collected in the months of July and August between 2011 and 2016 and analyzed for water-soluble ionic and elemental composition. Three characteristic profiles emerge: (i) a reduction of concentration with in-cloud altitude for particulate species directly emitted from sources below cloud without in-cloud sources (e.g., Cl-, Na+); (ii) an increase of concentration with in-cloud altitude (e.g., NO2-, formate); and (iii) species exhibiting a peakmore » in concentration in the middle of cloud (e.g., non-sea salt SO42-, NO3-, organic acids). Vertical profiles of rainout parameters such as loss frequency, lifetime, and change in concentration with respect to time show that the scavenging efficiency throughout the cloud depth depends strongly on the thickness of the cloud. Thin clouds exhibit a greater scavenging loss frequency at cloud top, while thick clouds have a greater scavenging loss frequency at cloud base. The implications of these results for treatment of wet scavenging in models are discussed.« less

Clouds Aerosols Internal Affaires: Increasing Cloud Fraction and Enhancing the Convection

NASA Technical Reports Server (NTRS)

Koren, Ilan; Kaufman, Yoram; Remer, Lorraine; Rosenfeld, Danny; Rudich, Yinon

2004-01-01

Clouds developing in a polluted environment have more numerous, smaller cloud droplets that can increase the cloud lifetime and liquid water content. Such changes in the cloud droplet properties may suppress low precipitation allowing development of a stronger convection and higher freezing level. Delaying the washout of the cloud water (and aerosol), and the stronger convection will result in higher clouds with longer life time and larger anvils. We show these effects by using large statistics of the new, 1km resolution data from MODIS on the Terra satellite. We isolate the aerosol effects from meteorology by regression and showing that aerosol microphysical effects increases cloud fraction by average of 30 presents for all cloud types and increases convective cloud top pressure by average of 35mb. We analyze the aerosol cloud interaction separately for high pressure trade wind cloud systems and separately for deep convective cloud systems. The resultant aerosol radiative effect on climate for the high pressure cloud system is: -10 to -13 W/sq m at the top of the atmosphere (TOA) and -11 to -14 W/sq m at the surface. For deeper convective clouds the forcing is: -4 to -5 W/sq m at the TOA and -6 to -7 W/sq m at the surface.

Cloud Infrastructure & Applications - CloudIA

NASA Astrophysics Data System (ADS)

Sulistio, Anthony; Reich, Christoph; Doelitzscher, Frank

The idea behind Cloud Computing is to deliver Infrastructure-as-a-Services and Software-as-a-Service over the Internet on an easy pay-per-use business model. To harness the potentials of Cloud Computing for e-Learning and research purposes, and to small- and medium-sized enterprises, the Hochschule Furtwangen University establishes a new project, called Cloud Infrastructure & Applications (CloudIA). The CloudIA project is a market-oriented cloud infrastructure that leverages different virtualization technologies, by supporting Service-Level Agreements for various service offerings. This paper describes the CloudIA project in details and mentions our early experiences in building a private cloud using an existing infrastructure.

Sensitivity of single column model simulations of Arctic springtime clouds to different cloud cover and mixed phase cloud parameterizations

NASA Astrophysics Data System (ADS)

Zhang, Junhua; Lohmann, Ulrike

2003-08-01

The single column model of the Canadian Centre for Climate Modeling and Analysis (CCCma) climate model is used to simulate Arctic spring cloud properties observed during the Surface Heat Budget of the Arctic Ocean (SHEBA) experiment. The model is driven by the rawinsonde observations constrained European Center for Medium-Range Weather Forecasts (ECMWF) reanalysis data. Five cloud parameterizations, including three statistical and two explicit schemes, are compared and the sensitivity to mixed phase cloud parameterizations is studied. Using the original mixed phase cloud parameterization of the model, the statistical cloud schemes produce more cloud cover, cloud water, and precipitation than the explicit schemes and in general agree better with observations. The mixed phase cloud parameterization from ECMWF decreases the initial saturation specific humidity threshold of cloud formation. This improves the simulated cloud cover in the explicit schemes and reduces the difference between the different cloud schemes. On the other hand, because the ECMWF mixed phase cloud scheme does not consider the Bergeron-Findeisen process, less ice crystals are formed. This leads to a higher liquid water path and less precipitation than what was observed.

Use of the ARM Measurement of Spectral Zenith Radiance For Better Understanding Of 3D Cloud-Radiation Processes and Aerosol-Cloud Interaction

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chiu, Jui-Yuan

2010-10-19

Our proposal focuses on cloud-radiation processes in a general 3D cloud situation, with particular emphasis on cloud optical depth and effective particle size. We also focus on zenith radiance measurements, both active and passive. The proposal has three main parts. Part One exploits the "solar-background" mode of ARM lidars to allow them to retrieve cloud optical depth not just for thin clouds but for all clouds. This also enables the study of aerosol cloud interactions with a single instrument. Part Two exploits the large number of new wavelengths offered by ARM's zenith-pointing ShortWave Spectrometer (SWS), especially during CLASIC, to developmore » better retrievals not only of cloud optical depth but also of cloud particle size. We also propose to take advantage of the SWS's 1 Hz sampling to study the "twilight zone" around clouds where strong aerosol-cloud interactions are taking place. Part Three involves continuing our cloud optical depth and cloud fraction retrieval research with ARM's 2NFOV instrument by, first, analyzing its data from the AMF-COPS/CLOWD deployment, and second, making our algorithms part of ARM's operational data processing.« less

A Comparison of High Spectral Resolution Infrared Cloud-Top Pressure Altitude Algorithms Using S-HIS Measurements

NASA Technical Reports Server (NTRS)

Holz, Robert E.; Ackerman, Steve; Antonelli, Paolo; Nagle, Fred; McGill, Matthew; Hlavka, Dennis L.; Hart, William D.

2005-01-01

This paper presents a comparison of cloud-top altitude retrieval methods applied to S-HIS (Scanning High Resolution Interferometer Sounder) measurements. Included in this comparison is an improvement to the traditional CO2 Slicing method. The new method, CO2 Sorting, determines optimal channel pairs to apply the CO2 Slicing. Measurements from collocated samples of the Cloud Physics Lidar (CPL) and Modis Airborne Simulator (MAS) instruments assist in the comparison. For optically thick clouds good correlation between the S-HIS and lidar cloud-top retrievals are found. For tenuous ice clouds there can be large differences between lidar (CPL) and S-HIS retrieved cloud-tops. It is found that CO2 Sorting significantly reduces the cloud height biases for the optically thin cloud (total optical depths less then 1.0). For geometrically thick but optically thin cirrus clouds large differences between the S-HIS infrared cloud top retrievals and the CPL detected cloud top where found. For these cases the cloud height retrieved by the S-HIS cloud retrievals correlated closely with the level the CPL integrated cloud optical depth was approximately 1.0.

Integrated Cloud-Aerosol-Radiation Product using CERES, MODIS, CALIPSO and CloudSat Data

NASA Technical Reports Server (NTRS)

Sun-Mack, Sunny; Minnis, Patrick; Chen, Yan; Gibson, Sharon; Yi, Yuhong; Trepte, Qing; Wielicki, Bruce; Kato, Seiji; Winker, Dave

2007-01-01

This paper documents the development of the first integrated data set of global vertical profiles of clouds, aerosols, and radiation using the combined NASA A-Train data from the Aqua Clouds and Earth's Radiant Energy System (CERES) and Moderate Resolution Imaging Spectroradiometer (MODIS), Cloud-Aerosol Lidar and Infrared Pathfinder Satellite Observations (CALIPSO), and CloudSat. As part of this effort, cloud data from the CALIPSO lidar and the CloudSat radar are merged with the integrated column cloud properties from the CERES-MODIS analyses. The active and passive datasets are compared to determine commonalities and differences in order to facilitate the development of a 3- dimensional cloud and aerosol dataset that will then be integrated into the CERES broadband radiance footprint. Preliminary results from the comparisons for April 2007 reveal that the CERES-MODIS global cloud amounts are, on average, 0.14 less and 0.15 greater than those from CALIPSO and CloudSat, respectively. These new data will provide unprecedented ability to test and improve global cloud and aerosol models, to investigate aerosol direct and indirect radiative forcing, and to validate the accuracy of global aerosol, cloud, and radiation data sets especially in polar regions and for multi-layered cloud conditions.

Integrated cloud-aerosol-radiation product using CERES, MODIS, CALIPSO, and CloudSat data

NASA Astrophysics Data System (ADS)

Sun-Mack, Sunny; Minnis, Patrick; Chen, Yan; Gibson, Sharon; Yi, Yuhong; Trepte, Qing; Wielicki, Bruce; Kato, Seiji; Winker, Dave; Stephens, Graeme; Partain, Philip

2007-10-01

This paper documents the development of the first integrated data set of global vertical profiles of clouds, aerosols, and radiation using the combined NASA A-Train data from the Aqua Clouds and Earth's Radiant Energy System (CERES) and Moderate Resolution Imaging Spectroradiometer (MODIS), Cloud-Aerosol Lidar and Infrared Pathfinder Satellite Observations (CALIPSO), and CloudSat. As part of this effort, cloud data from the CALIPSO lidar and the CloudSat radar are merged with the integrated column cloud properties from the CERES-MODIS analyses. The active and passive datasets are compared to determine commonalities and differences in order to facilitate the development of a 3-dimensional cloud and aerosol dataset that will then be integrated into the CERES broadband radiance footprint. Preliminary results from the comparisons for April 2007 reveal that the CERES-MODIS global cloud amounts are, on average, 0.14 less and 0.15 greater than those from CALIPSO and CloudSat, respectively. These new data will provide unprecedented ability to test and improve global cloud and aerosol models, to investigate aerosol direct and indirect radiative forcing, and to validate the accuracy of global aerosol, cloud, and radiation data sets especially in polar regions and for multi-layered cloud conditions.

A cloud shadow detection method combined with cloud height iteration and spectral analysis for Landsat 8 OLI data

NASA Astrophysics Data System (ADS)

Sun, Lin; Liu, Xinyan; Yang, Yikun; Chen, TingTing; Wang, Quan; Zhou, Xueying

2018-04-01

Although enhanced over prior Landsat instruments, Landsat 8 OLI can obtain very high cloud detection precisions, but for the detection of cloud shadows, it still faces great challenges. Geometry-based cloud shadow detection methods are considered the most effective and are being improved constantly. The Function of Mask (Fmask) cloud shadow detection method is one of the most representative geometry-based methods that has been used for cloud shadow detection with Landsat 8 OLI. However, the Fmask method estimates cloud height employing fixed temperature rates, which are highly uncertain, and errors of large area cloud shadow detection can be caused by errors in estimations of cloud height. This article improves the geometry-based cloud shadow detection method for Landsat OLI from the following two aspects. (1) Cloud height no longer depends on the brightness temperature of the thermal infrared band but uses a possible dynamic range from 200 m to 12,000 m. In this case, cloud shadow is not a specific location but a possible range. Further analysis was carried out in the possible range based on the spectrum to determine cloud shadow location. This effectively avoids the cloud shadow leakage caused by the error in the height determination of a cloud. (2) Object-based and pixel spectral analyses are combined to detect cloud shadows, which can realize cloud shadow detection from two aspects of target scale and pixel scale. Based on the analysis of the spectral differences between the cloud shadow and typical ground objects, the best cloud shadow detection bands of Landsat 8 OLI were determined. The combined use of spectrum and shape can effectively improve the detection precision of cloud shadows produced by thin clouds. Several cloud shadow detection experiments were carried out, and the results were verified by the results of artificial recognition. The results of these experiments indicated that this method can identify cloud shadows in different regions with correct accuracy exceeding 80%, approximately 5% of the areas were wrongly identified, and approximately 10% of the cloud shadow areas were missing. The accuracy of this method is obviously higher than the recognition accuracy of Fmask, which has correct accuracy lower than 60%, and the missing recognition is approximately 40%.

Some Technical Aspects of a CALIOP and MODIS Data Analysis that Examines Near-Cloud Aerosol Properties as a Function of Cloud Fraction

NASA Technical Reports Server (NTRS)

Varnai, Tamas; Yang, Weidong; Marshak, Alexander

2016-01-01

CALIOP shows stronger near-cloud changes in aerosol properties at higher cloud fractions. Cloud fraction variations explain a third of near-cloud changes in overall aerosol statistics. Cloud fraction and aerosol particle size distribution have a complex relationship.

Process-model Simulations of Cloud Albedo Enhancement by Aerosols in the Arctic

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kravitz, Benjamin S.; Wang, Hailong; Rasch, Philip J.

2014-11-17

A cloud-resolving model is used to simulate the effectiveness of Arctic marine cloud brightening via injection of cloud condensation nuclei (CCN). An updated cloud microphysical scheme is employed, with prognostic CCN and cloud particle numbers in both liquid and mixed-phase marine low clouds. Injection of CCN into the marine boundary layer can delay the collapse of the boundary layer and increase low-cloud albedo. Because nearly all of the albedo effects are in the liquid phase due to the removal of ice water by snowfall when ice processes are involved, albedo increases are stronger for pure liquid clouds than mixed-phase clouds.more » Liquid precipitation can be suppressed by CCN injection, whereas ice precipitation (snow) is affected less; thus the effectiveness of brightening mixed-phase clouds is lower than for liquid-only clouds. CCN injection into a clean regime results in a greater albedo increase than injection into a polluted regime, consistent with current knowledge about aerosol-cloud interactions. Unlike previous studies investigating warm clouds, dynamical changes in circulation due to precipitation changes are small.« less

Classification of Arctic, Mid-Latitude and Tropical Clouds in the Mixed-Phase Temperature Regime

NASA Astrophysics Data System (ADS)

Costa, Anja; Afchine, Armin; Luebke, Anna; Meyer, Jessica; Dorsey, James R.; Gallagher, Martin W.; Ehrlich, André; Wendisch, Manfred; Krämer, Martina

2016-04-01

The degree of glaciation and the sizes and habits of ice particles formed in mixed-phase clouds remain not fully understood. However, these properties define the mixed clouds' radiative impact on the Earth's climate and thus a correct representation of this cloud type in global climate models is of importance for an improved certainty of climate predictions. This study focuses on the occurrence and characteristics of two types of clouds in the mixed-phase temperature regime (238-275K): coexistence clouds (Coex), in which both liquid drops and ice crystals exist, and fully glaciated clouds that develop in the Wegener-Bergeron-Findeisen regime (WBF clouds). We present an extensive dataset obtained by the Cloud and Aerosol Particle Spectrometer NIXE-CAPS, covering Arctic, mid-latitude and tropical regions. In total, we spent 45.2 hours within clouds in the mixed-phase temperature regime during five field campaigns (Arctic: VERDI, 2012 and RACEPAC, 2014 - Northern Canada; mid-latitude: COALESC, 2011 - UK and ML-Cirrus, 2014 - central Europe; tropics: ACRIDICON, 2014 - Brazil). We show that WBF and Coex clouds can be identified via cloud particle size distributions. The classified datasets are used to analyse temperature dependences of both cloud types as well as range and frequencies of cloud particle concentrations and sizes. One result is that Coex clouds containing supercooled liquid drops are found down to temperatures of -40 deg C only in tropical mixed clouds, while in the Arctic and mid-latitudes no liquid drops are observed below about -20 deg C. In addition, we show that the cloud particles' aspherical fractions - derived from polarization signatures of particles with diameters between 20 and 50 micrometers - differ significantly between WBF and Coex clouds. In Coex clouds, the aspherical fraction of cloud particles is generally very low, but increases with decreasing temperature. In WBF clouds, where all cloud particles are ice, about 20-40% of the cloud particles are nevertheless classified as spherical for all temperatures, possibly indicating columnar ice crystals (see Järvinen et al, submitted to JAS 2016).

Cloud vertical distribution from combined surface and space radar-lidar observations at two Arctic atmospheric observatories

DOE Office of Scientific and Technical Information (OSTI.GOV)

Liu, Yinghui; Shupe, Matthew D.; Wang, Zhien

Detailed and accurate vertical distributions of cloud properties (such as cloud fraction, cloud phase, and cloud water content) and their changes are essential to accurately calculate the surface radiative flux and to depict the mean climate state. Surface and space-based active sensors including radar and lidar are ideal to provide this information because of their superior capability to detect clouds and retrieve cloud microphysical properties. In this study, we compare the annual cycles of cloud property vertical distributions from space-based active sensors and surface-based active sensors at two Arctic atmospheric observatories, Barrow and Eureka. Based on the comparisons, we identifymore » the sensors' respective strengths and limitations, and develop a blended cloud property vertical distribution by combining both sets of observations. Results show that surface-based observations offer a more complete cloud property vertical distribution from the surface up to 11 km above mean sea level (a.m.s.l.) with limitations in the middle and high altitudes; the annual mean total cloud fraction from space-based observations shows 25-40 % fewer clouds below 0.5 km than from surface-based observations, and space-based observations also show much fewer ice clouds and mixed-phase clouds, and slightly more liquid clouds, from the surface to 1 km. In general, space-based observations show comparable cloud fractions between 1 and 2 km a.m.s.l., and larger cloud fractions above 2 km a.m.s.l. than from surface-based observations. A blended product combines the strengths of both products to provide a more reliable annual cycle of cloud property vertical distributions from the surface to 11 km a.m.s.l. This information can be valuable for deriving an accurate surface radiative budget in the Arctic and for cloud parameterization evaluation in weather and climate models. Cloud annual cycles show similar evolutions in total cloud fraction and ice cloud fraction, and lower liquid-containing cloud fraction at Eureka than at Barrow; the differences can be attributed to the generally colder and drier conditions at Eureka relative to Barrow.« less

Evaluating stratiform cloud base charge remotely

NASA Astrophysics Data System (ADS)

Harrison, R. Giles; Nicoll, Keri A.; Aplin, Karen L.

2017-06-01

Stratiform clouds acquire charge at their upper and lower horizontal boundaries due to vertical current flow in the global electric circuit. Cloud charge is expected to influence microphysical processes, but understanding is restricted by the infrequent in situ measurements available. For stratiform cloud bases below 1 km in altitude, the cloud base charge modifies the surface electric field beneath, allowing a new method of remote determination. Combining continuous cloud height data during 2015-2016 from a laser ceilometer with electric field mill data, cloud base charge is derived using a horizontal charged disk model. The median daily cloud base charge density found was -0.86 nC m-2 from 43 days' data. This is consistent with a uniformly charged region 40 m thick at the cloud base, now confirming that negative cloud base charge is a common feature of terrestrial layer clouds. This technique can also be applied to planetary atmospheres and volcanic plumes.