The connection between globular cluster systems and their host galaxy and environment: a case study of the isolated elliptical NGC 821

NASA Astrophysics Data System (ADS)

Spitler, Lee R.; Forbes, Duncan A.; Strader, Jay; Brodie, Jean P.; Gallagher, Jay S.

2008-03-01

In an effort to probe the globular cluster (GC) system of an isolated elliptical galaxy, a comprehensive analysis of the NGC 821 GC system was performed. New imaging from the WIYN Mini-Mosaic imager, supplemented with Hubble Space Telescope (HST) WFPC2 images reveals a GC system similar to those found in counterpart ellipticals located in high-density environments. To put these results into the context of galaxy formation, a robustly determined census of GC systems is presented and analysed for galaxies spanning a wide range of masses (> M*), morphologies and environments. Results from this meta-study: (1) confirm previous findings that the number of GCs normalized by host galaxy stellar mass increases with host stellar mass. Spiral galaxies in the sample show smaller relative GC numbers than those of massive ellipticals, suggesting the GC systems of massive ellipticals were not formed from major spiral-spiral mergers; (2) indicate that GC system numbers per unit galaxy baryon mass increases with host baryon mass and that GC formation efficiency may not be universal as previously thought; (3) suggest previously reported trends with environment may be incorrect due to sample bias or the use of galaxy stellar masses to normalize GC numbers. Thus claims for environmentally dependent GC formation efficiencies should be revisited; (4) in combination with weak-lensing halo mass estimates, suggest that GCs formed in direct proportion to the halo mass; (5) are consistent with theoretical predictions whereby the local epoch of reionization did not vary significantly with environment or host galaxy type. Based upon data from the WIYN Observatory, which is a joint facility of the University of Wisconsin-Madison, Indiana University, Yale University and the National Optical Astronomy Observatories. Also includes analysis of observations made with the Hubble Space Telescope obtained from the ESO/ST-ECF Science Archive Facility. E-mail: lspitler@astro.swin.edu.au

The Relation between Globular Cluster Systems and Supermassive Black Holes in Spiral Galaxies: The Case Study of NGC 4258

NASA Astrophysics Data System (ADS)

González-Lópezlira, Rosa A.; Lomelí-Núñez, Luis; Álamo-Martínez, Karla; Órdenes-Briceño, Yasna; Loinard, Laurent; Georgiev, Iskren Y.; Muñoz, Roberto P.; Puzia, Thomas H.; Bruzual A., Gustavo; Gwyn, Stephen

2017-02-01

We aim to explore the relationship between globular cluster total number, {N}{GC}, and central black hole mass, M •, in spiral galaxies, and compare it with that recently reported for ellipticals. We present results for the Sbc galaxy NGC 4258, from Canada-France-Hawaii Telescope data. Thanks to water masers with Keplerian rotation in a circumnuclear disk, NGC 4258 has the most precisely measured extragalactic distance and supermassive black hole mass to date. The globular cluster (GC) candidate selection is based on the ({u}* -{I}\\prime ) versus ({I}\\prime -{K}s) diagram, which is a superb tool to distinguish GCs from foreground stars, background galaxies, and young stellar clusters, and hence can provide the best number counts of GCs from photometry alone, virtually free of contamination, even if the galaxy is not completely edge-on. The mean optical and optical-near-infrared colors of the clusters are consistent with those of the Milky Way and M 31, after extinction is taken into account. We directly identify 39 GC candidates; after completeness correction, GC luminosity function extrapolation, and correction for spatial coverage, we calculate a total {N}{GC}=144+/- {31}-36+38 (random and systematic uncertainties, respectively). We have thus increased to six the sample of spiral galaxies with measurements of both M • and {N}{GC}. NGC 4258 has a specific frequency {S}{{N}}=0.4+/- 0.1 (random uncertainty), and is consistent within 2σ with the {N}{GC} versus M • correlation followed by elliptical galaxies. The Milky Way continues to be the only spiral that deviates significantly from the relation.

The Cluster Population of UGC 2885

NASA Astrophysics Data System (ADS)

Holwerda, Benne

2017-08-01

UGC 2885 was discoverd to be the most extended disk galaxy [250 kpc diameter] by Vera Rubin in the 1980's. We ask for HST observations of UGC 2885 as it is close enough to resolve the GC population with HST but it is a substantially more extended disk than any studied before. LCDM galaxy assembly implies that the GC population comes from small accreted systems and the disk -and the clusters associated with it- predominantly from gas accretion (matching angular momentum to the disk). Several scaling relations between the GC population and parent galaxy have been observed but these differ for disk and spheroidal (massive) galaxies.We propose to observe this galaxy with HST in 4 point WFC3 mosaic with coordinated ACS parallels to probe both the disk and outer halo component of the GC population. GC populations have been studied extensively using HST color mosaics of local disk galaxies and these can serve as comparison samples. How UGC 2885 cluster populations relate to its stellar and halo mass, luminosity and with radius will reveal the formation history of extra-ordinary disk.Our goals are twofold: our science goal is to map the luminosity, (some) size, and color distributions of the stellar and globular clusters in and around this disk. In absolute terms, we expect to find many GC but the relative relation of the GC population to this galaxy's mass (stellar and halo) and size will shed light on its formation history; similar to a group or cluster central elliptical or to a field galaxy (albeit one with a disk 10x the Milky Way's size)? Our secondary motive is to make an HST tribute image to the late Vera Rubin.

Wide-field Precision Kinematics of the M87 Globular Cluster System

NASA Astrophysics Data System (ADS)

Strader, Jay; Romanowsky, Aaron J.; Brodie, Jean P.; Spitler, Lee R.; Beasley, Michael A.; Arnold, Jacob A.; Tamura, Naoyuki; Sharples, Ray M.; Arimoto, Nobuo

2011-12-01

We present the most extensive combined photometric and spectroscopic study to date of the enormous globular cluster (GC) system around M87, the central giant elliptical galaxy in the nearby Virgo Cluster. Using observations from DEIMOS and the Low Resolution Imaging Spectrometer at Keck, and Hectospec on the Multiple Mirror Telescope, we derive new, precise radial velocities for 451 GCs around M87, with projected radii from ~5 to 185 kpc. We combine these measurements with literature data for a total sample of 737 objects, which we use for a re-examination of the kinematics of the GC system of M87. The velocities are analyzed in the context of archival wide-field photometry and a novel Hubble Space Telescope catalog of half-light radii, which includes sizes for 344 spectroscopically confirmed clusters. We use this unique catalog to identify 18 new candidate ultracompact dwarfs and to help clarify the relationship between these objects and true GCs. We find much lower values for the outer velocity dispersion and rotation of the GC system than in earlier papers and also differ from previous work in seeing no evidence for a transition in the inner halo to a potential dominated by the Virgo Cluster, nor for a truncation of the stellar halo. We find little kinematical evidence for an intergalactic GC population. Aided by the precision of the new velocity measurements, we see significant evidence for kinematical substructure over a wide range of radii, indicating that M87 is in active assembly. A simple, scale-free analysis finds less dark matter within ~85 kpc than in other recent work, reducing the tension between X-ray and optical results. In general, out to a projected radius of ~150 kpc, our data are consistent with the notion that M87 is not dynamically coupled to the Virgo Cluster; the core of Virgo may be in the earliest stages of assembly.

Wide-Field HST Observations of the Globular Cluster System in NGC 1399

NASA Astrophysics Data System (ADS)

Puzia, Thomas H.; Paolillo, Maurizio; Goudfrooij, Paul; Maccarone, Thomas J.; Fabbiano, Giuseppina; Angelini, Lorella

2014-01-01

We present a comprehensive high spatial-resolution imaging study of globular clusters (GCs) in NGC 1399, the central giant elliptical cD galaxy in the Fornax galaxy cluster, obtained with HST/ACS. Using a novel technique to construct drizzled PSF libraries for HST/ACS data, we accurately determine the GC half-light radius, r_h, for the major fraction of the NGC 1399 GC system and find a trend of increasing r_h versus galactocentric distance, R_gal, out to ~10 kpc and a flat relation beyond. This trend is very similar for blue and red GCs which are found to have a mean size ratio of r_h(red)/r_h(blue)=0.82+/-0.11 at all R_gal from the core regions of the galaxy out to ~40 kpc. This suggests that the size difference between blue and red GCs is due to internal mechanisms related to the evolution of their constituent stellar populations. Modeling the stellar mass density profile of NGC 1399 derived from its surface brightness profile shows that additional external dynamical mechanisms are required to limit the GC size in the galaxy halo regions. We suggest that this may be realized by an exotic GC orbit distribution function, an extended dark matter halo, and/or tidal stress induced by the increased stochasticity in the dwarf halo substructure at larger galactocentric radii. We compare our results with the GC r_h distribution functions in various galaxies and find that the fraction of extended GCs is systematically larger in late-type galaxies compared with GC systems in early-type galaxies. This is likely due to the dynamically more violent evolution of early-type galaxies. We match our GC r_h measurements with radial velocity data from the literature and split the resulting sample at the median r_h value into compact and extended GCs. We find that compact GCs show a significantly smaller line-of-sight velocity dispersion, 225+/-25 km/s, than their extended counterparts, 317+/-21 km/s. Considering the weaker statistical correlation in the GC r_h-color and the GC r_h-R_gal relations, the more significant GC size-dynamics relation appears to be astrophysically more relevant and hints at the dominant influence of the GC orbit distribution function on the evolution of GC structural parameters.

Wide-field Hubble Space Telescope Observations of the Globular Cluster System in NGC 1399

NASA Astrophysics Data System (ADS)

Puzia, Thomas H.; Paolillo, Maurizio; Goudfrooij, Paul; Maccarone, Thomas J.; Fabbiano, Giuseppina; Angelini, Lorella

2014-05-01

We present a comprehensive high spatial resolution imaging study of globular clusters (GCs) in NGC 1399, the central giant elliptical cD galaxy in the Fornax galaxy cluster, conducted with the Advanced Camera for Surveys (ACS) aboard the Hubble Space Telescope (HST). Using a novel technique to construct drizzled point-spread function libraries for HST/ACS data, we accurately determine the fidelity of GC structural parameter measurements from detailed artificial star cluster experiments and show the superior robustness of the GC half-light radius, rh , compared with other GC structural parameters, such as King core and tidal radius. The measurement of rh for the major fraction of the NGC 1399 GC system reveals a trend of increasing rh versus galactocentric distance, R gal, out to about 10 kpc and a flat relation beyond. This trend is very similar for blue and red GCs, which are found to have a mean size ratio of r h, red/r h, blue = 0.82 ± 0.11 at all galactocentric radii from the core regions of the galaxy out to ~40 kpc. This suggests that the size difference between blue and red GCs is due to internal mechanisms related to the evolution of their constituent stellar populations. Modeling the mass density profile of NGC 1399 shows that additional external dynamical mechanisms are required to limit the GC size in the galaxy halo regions to rh ≈ 2 pc. We suggest that this may be realized by an exotic GC orbit distribution function, an extended dark matter halo, and/or tidal stress induced by the increased stochasticity in the dwarf halo substructure at larger galactocentric distances. We compare our results with the GC rh distribution functions in various galaxies and find that the fraction of extended GCs with rh >= 5 pc is systematically larger in late-type galaxies compared with GC systems in early-type galaxies. This is likely due to the dynamically more violent evolution of early-type galaxies. We match our GC rh measurements with radial velocity data from the literature and split the resulting sample at the median rh value into compact and extended GCs. We find that compact GCs show a significantly smaller line-of-sight velocity dispersion, langσcmprang = 225 ± 25 km s-1, than their extended counterparts, langσextrang = 317 ± 21 km s-1. Considering the weaker statistical correlation in the GC rh color and the GC rh -R gal relations, the more significant GC size-dynamics relation appears to be astrophysically more relevant and hints at the dominant influence of the GC orbit distribution function on the evolution of GC structural parameters. Based on observations with the NASA/ESA Hubble Space Telescope obtained at the Space Telescope Science Institute, which is operated by the Association of Universities for Research in Astronomy, Incorporated, under NASA contract NAS5-26555.

The SLUGGS Survey: A Catalog of Over 4000 Globular Cluster Radial Velocities in 27 Nearby Early-type Galaxies

NASA Astrophysics Data System (ADS)

Forbes, Duncan A.; Alabi, Adebusola; Brodie, Jean P.; Romanowsky, Aaron J.; Strader, Jay; Foster, Caroline; Usher, Christopher; Spitler, Lee; Bellstedt, Sabine; Pastorello, Nicola; Villaume, Alexa; Wasserman, Asher; Pota, Vincenzo

2017-03-01

Here, we present positions and radial velocities for over 4000 globular clusters (GCs) in 27 nearby early-type galaxies from the SLUGGS survey. The SLUGGS survey is designed to be representative of elliptical and lenticular galaxies in the stellar mass range 10 < log {M}* /M ⊙ < 11.7. The data have been obtained over many years, mostly using the very stable multi-object spectrograph DEIMOS on the Keck II 10 m telescope. Radial velocities are measured using the calcium triplet lines, with a velocity accuracy of ±10-15 km s-1. We use phase space diagrams (I.e., velocity-position diagrams) to identify contaminants such as foreground stars and background galaxies, and to show that the contribution of GCs from neighboring galaxies is generally insignificant. Likely ultra-compact dwarfs are tabulated separately. We find that the mean velocity of the GC system is close to that of the host galaxy systemic velocity, indicating that the GC system is in overall dynamical equilibrium within the galaxy potential. We also find that the GC system velocity dispersion scales with host galaxy stellar mass, in a similar manner to the Faber-Jackson relation for the stellar velocity dispersion. Publication of these GC radial velocity catalogs should enable further studies in many areas, such as GC system substructure, kinematics, and host galaxy mass measurements.

Wide-Field Hubble Space Telescope Observations of the Globular Cluster System in NGC 1399*

NASA Technical Reports Server (NTRS)

Puzia, Thomas H.; Paolillo, Maurizio; Goudfrooij, Paul; Maccarone, Thomas J.; Fabbiano, Giuseppina; Angelini, Lorella

2014-01-01

We present a comprehensive high spatial resolution imaging study of globular clusters (GCs) in NGC 1399, thecentral giant elliptical cD galaxy in the Fornax galaxy cluster, conducted with the Advanced Camera for Surveys(ACS) aboard theHubble Space Telescope(HST).Using a novel technique to construct drizzled point-spreadfunction libraries for HSTACS data, we accurately determine the fidelity of GC structural parameter measurementsfrom detailed artificial star cluster experiments and show the superior robustness of the GC half-light radius,rh,compared with other GC structural parameters, such as King core and tidal radius. The measurement ofrhfor themajor fraction of the NGC 1399 GC system reveals a trend of increasingrhversus galactocentric distance,Rgal,out to about 10 kpc and a flat relation beyond. This trend is very similar for blue and red GCs, which are found tohave a mean size ratio ofrh,redrh,blue0.820.11 at all galactocentric radii from the core regions of the galaxyout to40 kpc. This suggests that the size difference between blue and red GCs is due to internal mechanismsrelated to the evolution of their constituent stellar populations. Modeling the mass density profile of NGC 1399shows that additional external dynamical mechanisms are required to limit the GC size in the galaxy halo regionstorh2 pc. We suggest that this may be realized by an exotic GC orbit distribution function, an extended darkmatter halo, andor tidal stress induced by the increased stochasticity in the dwarf halo substructure at largergalactocentric distances. We compare our results with the GCrhdistribution functions in various galaxies and findthat the fraction of extended GCs withrh5 pc is systematically larger in late-type galaxies compared with GCsystems in early-type galaxies. This is likely due to the dynamically more violent evolution of early-type galaxies.We match our GCrhmeasurements with radial velocity data from the literature and split the resulting sample at themedianrhvalue into compact and extended GCs. We find that compact GCs show a significantly smaller line-of-sight velocity dispersion,cmp22525 km s1, than their extended counterparts,ext31721 km s1.Considering the weaker statistical correlation in the GCrhcolor and the GCrhRgalrelations, the more significantGC sizedynamics relation appears to be astrophysically more relevant and hints at the dominant influence of theGC orbit distribution function on the evolution of GC structural parameters.

Galaxies at the Extremes: Ultradiffuse Galaxies in the Virgo Cluster

NASA Astrophysics Data System (ADS)

Mihos, Chris

2017-08-01

The ultradiffuse galaxies (UDGs) recently discovered in massive galaxy clusters presents both challenges and opportunities for our understanding of galaxy evolution in dense clusters. Such large, low density galaxies should be most vulnerable to gravitational destruction within the cluster environment. Thus their presence in cluster cores argues either that they must be stabilized by massive dark halos or else be short-lived objects undergoing rapid transformation, perhaps leading to the formation of ultracompact dwarf galaxies (UCDs) if their destruction leaves only a compact nucleus behind. We propose deep imaging of four Virgo Cluster UDGs to probe their local environment within Virgo via accurate tip of the red giant branch (TRGB) distances. With a distance precision of 1 Mpc, we will accurately place the objects in the Virgo core, cluster outskirts, or intervening field. When coupled with our extant kinematic data, we can determine whether they are infalling objects or instead have already passed through the cluster core. We will also compare their compact nuclei to Virgo UCDs, and study their globular cluster (GC) populations in detail. Probing three magnitudes beyond the turnover in the GC luminosity function, we will construct larger and cleaner GC samples than possible with ground-based imaging, using the total mass and radial extent of the globular cluster systems to estimate the dark halo mass and tidal radius for each UDG. The new information provided by HST about the local environment and intrinsic properties of these Virgo UDGs will be used in conjunction with simulation data to study cluster-driven evolution and transformation of low density galaxies.

Photometric and kinematic studies of extragalactic globular cluster systems

NASA Astrophysics Data System (ADS)

Dowell, Jessica

Globular clusters (GCs) are old, luminous, compact collections of stars found in galaxy halos that formed during the early stages of galaxy formation. Because of this, GCs serve as excellent tracers of the formation, structure, and merger history of their host galaxies. My dissertation will examine both the photometric and kinematic properties of GC systems and their relationship to their host galaxies. In the first section, I will present the analysis of the GC systems of two spiral galaxies, NGC 891 and NGC 1055. I will discuss the photometric methods used to detect GCs using wide-field BVR imaging and to quantify the global properties of the system such as the total number of GCs and their radial distribution. My results for these two GC systems were compared to those of other galaxies. I will also present the results of spectroscopic follow-up for two giant galaxies: the S0 galaxy NGC 4594 (M104), and the elliptical galaxy NGC 3379 (M105). I measured the radial velocities of GCs in these two galaxies, and combined them with published results to determine the mass distribution and mass-to-light (M/L) ratio profile for each galaxy out to large effective radius (7-9 Re). For both galaxies, I found that the M/L profiles increase with radius and do not flatten, which suggests that the dark matter halos in these galaxies extend to the edge of my data. I also looked for evidence of rotation in the GC systems, and found that neither system exhibits significant rotation around the host galaxy. I examined the velocity dispersion profile of each GC system and found kinematic differences between the red and blue GC subpopulations. Finally, I compared my results to mass estimates for these galaxies from other kinematic tracers and considered them in the context of galaxy formation models.

MASSIVE+: The Growth Histories of MASSIVE Survey Galaxies from their Globular Cluster Colors

NASA Astrophysics Data System (ADS)

Blakeslee, John

2017-08-01

The MASSIVE survey is targeting the 100 most massive galaxies within 108 Mpc that are visible in the northern sky. These most massive galaxies in the present-day universe reside in a surprisingly wide variety of environments, from rich clusters to fossil groups to near isolation. We propose to use WFC3/UVIS and ACS to carry out a deep imaging study of the globular cluster populations around a selected subset of the MASSIVE targets. Though much is known about GC systems of bright galaxies in rich clusters, we know surprisingly little about the effects of environment on these systems. The MASSIVE sample provides a golden opportunity to learn about the systematics of GC systems and what they can tell us about environmental drivers on the evolution of the highest mass galaxies. The most pressing questions to be addressed include: (1) Do isolated giants have the same constant mass fraction of GCs to total halo mass as BCGs of similar luminosity? (2) Do their GC systems show the same color (metallicity) distribution, which is an outcome of the mass spectrum of gas-rich halos during hierarchical growth? (3) Do the GCs in isolated high-mass galaxies follow the same radial distribution versus metallicity as in rich environments (a test of the relative importance of growth by accretion)? (4) Do the GCs of galaxies in sparse environments follow the same mass function? Our proposed second-band imaging will enable us to secure answers to these questions and add enormously to the legacy value of existing HST imaging of the highest mass galaxies in the universe.

Discovery of Remote Globular Cluster Satellites of M87

NASA Astrophysics Data System (ADS)

Sparkman, Lea; Guo, Rachel; Toloba, Elisa; Guhathakurta, Puragra; Peng, Eric W.; Ferrarese, Laura; Cote, Patrick; NGVS Collaboration

2016-01-01

We present the discovery of several tens of globular clusters (GCs) in the outer regions of the giant elliptical M87, the brightest galaxy in the Virgo Cluster. These M87 GC satellites were discovered in the course of Keck/DEIMOS spectroscopic follow up of GC candidates that were identified in the Next Generation Virgo cluster Survey (NGVS). Specifically, the primary targets of this Keck spectroscopic campaign were GC satellites of early-type dwarf (dE) galaxies. However, we found that our sample contained a subset of GCs for which M87 is the most likely host. This subset is consistent with having an r^-1 power-law surface density distribution and a radial velocity distribution both centered on M87. The remote M87 GC satellites span the radial range 140 to 900 kpc, out to about a third of the Virgo Cluster's virial radius (for comparison, M87's effective radius is only 8 kpc). These M87 GC satellites are probably former satellites of other Virgo Cluster galaxies that have subsequently been cannibalized by M87.This research was supported by the National Science Foundation and the UC Santa Cruz Science Internship Program.

Propiedades peculiares de los sistemas de cúmulos globulares y su relación con la formación de sus galaxias anfitrionas

NASA Astrophysics Data System (ADS)

Bassino, L. P.

2017-10-01

Globular clusters (GCs) are ancient stellar systems, among the oldest ones in the Universe. As a consequence, they carry information related to the formation and evolution of their host-galaxies. The study of GC systems associated with early-type galaxies has shown that most of them have similar characteristics. Among them, the most noticeable is the existence of two GC subpopulations (metal-poor and metal-rich, respectively), that differ clearly in their colour distribution, spatial distribution, and kinematics. However, GC systems whose properties differ from the known ``classic'' ones, have been detected in the last years. For instance, the case of GC systems that present more than two subpopulations in their colour distribution or anomalies in the luminosity function. The peculiar properties of the GC systems, together with characteristics of the host-galaxy like the presence of type Ia SNe, the surface-brightness distribution, or the colour map, may be related to bursts of star formation and let us rebuild the host-galaxy history.

Globular cluster formation with multiple stellar populations from hierarchical star cluster complexes

NASA Astrophysics Data System (ADS)

Bekki, Kenji

2017-05-01

Most old globular clusters (GCs) in the Galaxy are observed to have internal chemical abundance spreads in light elements. We discuss a new GC formation scenario based on hierarchical star formation within fractal molecular clouds. In the new scenario, a cluster of bound and unbound star clusters ('star cluster complex', SCC) that have a power-law cluster mass function with a slope (β) of 2 is first formed from a massive gas clump developed in a dwarf galaxy. Such cluster complexes and β = 2 are observed and expected from hierarchical star formation. The most massive star cluster ('main cluster'), which is the progenitor of a GC, can accrete gas ejected from asymptotic giant branch (AGB) stars initially in the cluster and other low-mass clusters before the clusters are tidally stripped or destroyed to become field stars in the dwarf. The SCC is initially embedded in a giant gas hole created by numerous supernovae of the SCC so that cold gas outside the hole can be accreted on to the main cluster later. New stars formed from the accreted gas have chemical abundances that are different from those of the original SCC. Using hydrodynamical simulations of GC formation based on this scenario, we show that the main cluster with the initial mass as large as [2-5] × 105 M⊙ can accrete more than 105 M⊙ gas from AGB stars of the SCC. We suggest that merging of hierarchical SSCs can play key roles in stellar halo formation around GCs and self-enrichment processes in the early phase of GC formation.

Large-Scale Genomic Analysis of Codon Usage in Dengue Virus and Evaluation of Its Phylogenetic Dependence

PubMed Central

Lara-Ramírez, Edgar E.; Salazar, Ma Isabel; López-López, María de Jesús; Salas-Benito, Juan Santiago; Sánchez-Varela, Alejandro

2014-01-01

The increasing number of dengue virus (DENV) genome sequences available allows identifying the contributing factors to DENV evolution. In the present study, the codon usage in serotypes 1–4 (DENV1–4) has been explored for 3047 sequenced genomes using different statistics methods. The correlation analysis of total GC content (GC) with GC content at the three nucleotide positions of codons (GC1, GC2, and GC3) as well as the effective number of codons (ENC, ENCp) versus GC3 plots revealed mutational bias and purifying selection pressures as the major forces influencing the codon usage, but with distinct pressure on specific nucleotide position in the codon. The correspondence analysis (CA) and clustering analysis on relative synonymous codon usage (RSCU) within each serotype showed similar clustering patterns to the phylogenetic analysis of nucleotide sequences for DENV1–4. These clustering patterns are strongly related to the virus geographic origin. The phylogenetic dependence analysis also suggests that stabilizing selection acts on the codon usage bias. Our analysis of a large scale reveals new feature on DENV genomic evolution. PMID:25136631

Features of globular cluster's dynamics with an intermediate-mass black hole

NASA Astrophysics Data System (ADS)

Ryabova, Marina V.; Gorban, Alena S.; Shchekinov, Yuri A.; Vasiliev, Evgenii O.

2018-02-01

In this paper, we address the question of how a central intermediate-mass black hole (IMBH) in a globular cluster (GC) affects dynamics, core collapse, and formation of the binary population. It is shown that the central IMBH forms a binary system that affects dynamics of stars in the cluster significantly. The presence of an intermediate-mass black hole with mass ≥ 1.0-1.7%of the total stellar mass in the cluster inhibits the formation of binary stars population.

The X-Ray Globular Cluster Population in NGC 1399

NASA Technical Reports Server (NTRS)

Angelini, Lorella; Loewenstein, Michael; Mushotzky, Richard F.; White, Nicholas E. (Technical Monitor)

2001-01-01

We report on X-ray sources detected in the Chandra images of the elliptical galaxy NGC 1399 and identified with globular clusters (GCs). The 8'x 8' Chandra image shows that a large fraction of the 2-10 keV X-ray emission is resolved into point sources, with a luminosity threshold of 5 x 10 (exp 37) ergs s-1. These sources are most likely Low Mass X-ray Binaries (LMXBs). More than 70% of the X-ray sources, in a region imaged by Hubble Space Telescope (HST), are located within GCs. Many of these sources have super-Eddington luminosity (for an accreting neutron star) and their average luminosity is higher than the remaining sources. This association suggests that, in giant elliptical galaxies, luminous X-ray binaries preferentially form in GCs. The spectral properties of the GC and non-GC sources are in most cases similar to those of LMXBs in our galaxy. Two of the brightest sources, one of which is in GC, have a much softer spectra as seen in the high state black hole. The "apparent" super-Eddington luminosity in many cases may be due to multiple LMXB systems within individual GC, but with some of the most extreme luminous systems containing massive black holes.

Globular clusters and environmental effects in galaxy clusters

NASA Astrophysics Data System (ADS)

Sales, Laura

2016-10-01

Globular clusters are old compact stellar systems orbiting around galaxies of all types. Tens of thousands of them can also be found populating the intra-cluster regions of nearby galaxy clusters like Virgo and Coma. Thanks to the HST Frontier Fields program, GCs are starting now to be detected also in intermediate redshift clusters. Yet, despite their ubiquity, a theoretical model for the formation and evolution of GCs is still missing, especially within the cosmological context.Here we propose to use cosmological hydrodynamical simulations of 18 galaxy clusters coupled to a post-processing GC formation model to explore the assembly of galaxies in clusters together with their expected GC population. The method, which has already been implemented and tested, will allow us to characterize for the first time the number, radial distribution and kinematics of GCs in clusters, with products directly comparable to observational maps. We will explore cluster-to-cluster variations and also characterize the build up of the intra-cluster component of GCs with time.As the method relies on a detailed study of the star-formation history of galaxies, we will jointly constrain the predicted quenching time-scales for satellites and the occurrence of starburst events associated to infall and orbital pericenters of galaxies in massive clusters. This will inform further studies on the distribution, velocity and properties of post-starburst galaxies in past, ongoing and future HST programs.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hargis, Jonathan R.; Rhode, Katherine L., E-mail: jhargis@astro.indiana.edu, E-mail: rhode@astro.indiana.edu

This paper presents results from wide-field imaging of the globular cluster (GC) systems of five intermediate-luminosity (M{sub V} {approx} -21 to -22) early-type galaxies. The aim is to accurately quantify the global properties of the GC systems by measuring them out to large radii. We obtained BVR imaging of four lenticular galaxies (NGC 5866, NGC 4762, NGC 4754, NGC 3384) and one elliptical galaxy (NGC 5813) using the KPNO 4 m telescope and Mosaic imager and traced the GC population to projected galactocentric radii ranging from {approx}20 kpc to 120 kpc. We combine our imaging with Hubble Space Telescope datamore » to measure the GC surface density close to the galaxy center. We calculate the total number of GCs (N{sub GC}) from the integrated radial profile and find N{sub GC} = 340 {+-} 80 for NGC 5866, N{sub GC} = 2900 {+-} 400 for NGC 5813, N{sub GC} = 270 {+-} 30 for NGC 4762, N{sub GC} = 115 {+-} 15 for NGC 4754, and N{sub GC} = 120 {+-} 30 for NGC 3384. The measured GC specific frequencies are S{sub N} between 0.6 and 3.6 and T in the range 0.9-4.2. These values are consistent with the mean specific frequencies for the galaxies' morphological types found by our survey and other published data. Three galaxies (NGC 5866, NGC 5813, and NGC 4762) had sufficient numbers of GC candidates to investigate color bimodality and color gradients in the GC systems. NGC 5813 shows strong evidence (>3{sigma}) for bimodality and a B - R color gradient resulting from a more centrally concentrated red (metal-rich) GC subpopulation. We find no evidence for statistically significant color gradients in the other two galaxies.« less

The Evolution of Galaxies Through the Spatial Distribution of Their Globular Clusters: the Brightest Galaxies in Fornax

NASA Astrophysics Data System (ADS)

Zegeye, David W.

2018-01-01

We present a study of the evolution of the 10 brightest galaxies in the Fornax Cluster, as reconstructed through their Globular Cluster (GC) populations. GCs can be characterized by their projected two-dimensional (2D) spatial distribution. Over- or under-densities in the GC distribution, can be linked to events in the host galaxy assembly history, and used to constrain the properties of their progenitors. With HST/ACS imaging, we identified significant structures in the GC distribution of the 10 galaxies investigated, with some of the galaxies possessing structures with >10-sigma significance. GC over-densities have been found within the galaxies, with significant differences between the red and blue GC population. For elongated galaxies, structures are preferentially to be aligned along the major axis. Fornax Cluster galaxies appear to be more dynamically relaxed than the Virgo Cluster galaxies previously investigated with the same methodology by D'Abrusco et al. (2016). However, from these observations, the evident imprints left in the spatial distribution of GCs in these galaxies suggest a similarly intense history of interactions.The SAO REU program is funded by the National Science Foundation REU and Department of Defense ASSURE programs under NSF Grant AST-1659473, and by the Smithsonian Institution.

The globular cluster systems of 54 Coma ultra-diffuse galaxies: statistical constraints from HST data

NASA Astrophysics Data System (ADS)

Amorisco, N. C.; Monachesi, A.; Agnello, A.; White, S. D. M.

2018-04-01

We use data from the HST Coma Cluster Treasury program to assess the richness of the globular cluster systems (GCSs) of 54 Coma ultra-diffuse galaxies (UDGs), 18 of which have a half-light radius exceeding 1.5 kpc. We use a hierarchical Bayesian method tested on a large number of mock data sets to account consistently for the high and spatially varying background counts in Coma. These include both background galaxies and intra-cluster globular clusters (ICGCs), which are disentangled from the population of member globular clusters (GCs) in a probabilistic fashion. We find no candidate for a GCS as rich as that of the Milky Way, our sample has GCSs typical of dwarf galaxies. For the standard relation between GCS richness and halo mass, 33 galaxies have a virial mass Mvir ≤ 1011 M⊙ at 90 per cent probability. Only three have Mvir > 1011 M⊙ with the same confidence. The mean colour and spread in colour of the UDG GCs are indistinguishable from those of the abundant population of ICGCs. The majority of UDGs in our sample are consistent with the relation between stellar mass and GC richness of `normal' dwarf galaxies. Nine systems, however, display GCSs that are richer by a factor of 3 or more (at 90 per cent probability). Six of these have sizes ≲1.4 kpc. Our results imply that the physical mechanisms responsible for the extended size of the UDGs and for the enhanced GC richness of some cluster dwarfs are at most weakly correlated.

The SAGES Legacy Unifying Globulars and Galaxies survey (SLUGGS): sample definition, methods, and initial results

DOE Office of Scientific and Technical Information (OSTI.GOV)

Brodie, Jean P.; Romanowsky, Aaron J.; Jennings, Zachary G.

2014-11-20

We introduce and provide the scientific motivation for a wide-field photometric and spectroscopic chemodynamical survey of nearby early-type galaxies (ETGs) and their globular cluster (GC) systems. The SAGES Legacy Unifying Globulars and GalaxieS (SLUGGS) survey is being carried out primarily with Subaru/Suprime-Cam and Keck/DEIMOS. The former provides deep gri imaging over a 900 arcmin{sup 2} field-of-view to characterize GC and host galaxy colors and spatial distributions, and to identify spectroscopic targets. The NIR Ca II triplet provides GC line-of-sight velocities and metallicities out to typically ∼8 R {sub e}, and to ∼15 R {sub e} in some cases. New techniquesmore » to extract integrated stellar kinematics and metallicities to large radii (∼2-3 R {sub e}) are used in concert with GC data to create two-dimensional (2D) velocity and metallicity maps for comparison with simulations of galaxy formation. The advantages of SLUGGS compared with other, complementary, 2D-chemodynamical surveys are its superior velocity resolution, radial extent, and multiple halo tracers. We describe the sample of 25 nearby ETGs, the selection criteria for galaxies and GCs, the observing strategies, the data reduction techniques, and modeling methods. The survey observations are nearly complete and more than 30 papers have so far been published using SLUGGS data. Here we summarize some initial results, including signatures of two-phase galaxy assembly, evidence for GC metallicity bimodality, and a novel framework for the formation of extended star clusters and ultracompact dwarfs. An integrated overview of current chemodynamical constraints on GC systems points to separate, in situ formation modes at high redshifts for metal-poor and metal-rich GCs.« less

The end of the White Dwarf Cooling Sequence of NGC 6752

NASA Astrophysics Data System (ADS)

Bedin, Luigi

2017-08-01

We propose to study the last HST-accessible white dwarf (WD) cooling sequence (CS) for a nearby globular cluster (GC), the chemically complex, extreme blue horizontal branch cluster NGC 6752. Over 97% of stars end their lives as WDs, and the WD CS provides constraints not only on the age, but also potentially the star formation history of a GC. The CS of WDs also lies in the least-explored region of the color-magnitude diagram of old stellar populations. Recent deep imaging with HST has successfully reached the end of the WD CS in only three classical old GCs, M4, NGC 6397 and 47 Tuc, and reveals an unexpectedly complex, and double-peaked, WD CS in the metal rich old open cluster NGC 6791. One more investigation is in progress on the massive globular Omega Centauri, where over 14 sub-populations are known to exist.While almost every cluster is known to host multiple populations, every single cluster is unique. NGC 6752 is a bridge between the relatively simple globular clusters, and Omega Cen, the most complex globular cluster known. NGC 6752 has an extended blue horizontal branch, a collapsed core and 3 chemically distinct populations. It is our last chance to add diversity to our very limited sample of WD CS, so far containing only 3 globular clusters, one old open cluster, and the complex Omega Cen system. We need to undertake this investigation while HST is still operational, as there is no foreseeable opportunity in the post-HST era to have one extra WD CS in the homogeneus optical photometric system of HST.

Dynamics, Chemical Abundances, and ages of Globular Clusters in the Virgo Cluster of Galaxies

NASA Astrophysics Data System (ADS)

Guhathakurta, Puragra; NGVS Collaboration

2018-01-01

We present a study of the dynamics, metallicities, and ages of globular clusters (GCs) in the Next Generation Virgo cluster Survey (NGVS), a deep, multi-band (u, g, r, i, z, and Ks), wide-field (104 deg2) imaging survey carried out using the 3.6-m Canada-France-Hawaii Telescope and MegaCam imager. GC candidates were selected from the NGVS survey using photometric and image morphology criteria and these were followed up with deep, medium-resolution, multi-object spectroscopy using the Keck II 10-m telescope and DEIMOS spectrograph. The primary spectroscopic targets were candidate GC satellites of dwarf elliptical (dE) and ultra-diffuse galaxies (UDGs) in the Virgo cluster. While many objects were confirmed as GC satellites of Virgo dEs and UDGs, many turned out to be non-satellites based on their radial velocity and/or positional mismatch any identifiable Virgo cluster galaxy. We have used a combination of spectral characteristics (e.g., presence of absorption vs. emission lines), new Gaussian mixture modeling of radial velocity and sky position data, and a new extreme deconvolution analysis of ugrizKs photometry and image morphology, to classify all the objects in our sample into: (1) GC satellites of dE galaxies, (2) GC satellites of UDGs, (3) intra-cluster GCs (ICGCs) in the Virgo cluster, (4) GCs in the outer halo of the central cluster galaxy M87, (5) foreground Milky Way stars, and (6) distant background galaxies. We use these data to study the dynamics and dark matter content of dE and UDGs in the Virgo cluster, place important constraints on the nature of dE nuclei, and study the origin of ICGCs versus GCs in the remote M87 halo.We are grateful for financial support from the NSF and NASA/STScI.

Adaptive capacity of geographical clusters: Complexity science and network theory approach

NASA Astrophysics Data System (ADS)

Albino, Vito; Carbonara, Nunzia; Giannoccaro, Ilaria

This paper deals with the adaptive capacity of geographical clusters (GCs), that is a relevant topic in the literature. To address this topic, GC is considered as a complex adaptive system (CAS). Three theoretical propositions concerning the GC adaptive capacity are formulated by using complexity theory. First, we identify three main properties of CAS s that affect the adaptive capacity, namely the interconnectivity, the heterogeneity, and the level of control, and define how the value of these properties influence the adaptive capacity. Then, we associate these properties with specific GC characteristics so obtaining the key conditions of GCs that give them the adaptive capacity so assuring their competitive advantage. To test these theoretical propositions, a case study on two real GCs is carried out. The considered GCs are modeled as networks where firms are nodes and inter-firms relationships are links. Heterogeneity, interconnectivity, and level of control are considered as network properties and thus measured by using the methods of the network theory.

NETL Research Technology

ScienceCinema

None

2018-01-16

NETL is committed to providing its researchers with the latest scientific equipment. This video highlights three technologies: the Beowulf Cluster supercomputer, the OASIS Surface Analytical and Imaging System, and the gas chromatograph-inductively coupled plasma-mass spectrometer, or GC-ICP-MS.

MOCCA-SURVEY Database I: Galactic Globular Clusters Harbouring a Black Hole Subsystem

NASA Astrophysics Data System (ADS)

Askar, Abbas; Sedda, Manuel Arca; Giersz, Mirek

2018-05-01

There have been increasing theoretical speculations and observational indications that certain globular clusters (GCs) could contain a sizeable population of stellar mass black holes (BHs). In this paper, we shortlist at least 29 Galactic GCs that could be hosting a subsystem of BHs (BHS). In a companion paper, we analysed results from a wide array of GC models (simulated with the MOCCA code for cluster simulations) that retained few tens to several hundreds of BHs at 12 Gyr and showed that the properties of the BHS in those GCs correlate with the GC's observable properties. Building on those results, we use available observational properties of 140 Galactic GCs to identify 29 GCs that could potentially be harbouring up to a few hundreds of BHs. Utilizing observational properties and theoretical scaling relations, we estimate the density, size and mass of the BHS in these GCs. We also calculate the total number of BHs and the fraction of BHs contained in a binary system for our shortlisted Galactic GCs. Additionally, we mention other Galactic GCs that could also contain significant number of single BHs or BHs in binary systems.

The Perseus Cluster: Bridging the Extremes of Stellar Systems

NASA Astrophysics Data System (ADS)

Harris, William

2017-08-01

The Perseus cluster (Abell 426) at d=75 Mpc is as massive and diverse as Virgo and Coma and displays a rich laboratory for studying galaxy evolution. Its massive X-ray halo gas component and its high proportion of large early-type galaxies point to a long history of dynamical interaction amongst the cluster members. The central supergiant, NGC 1275, is perhaps the most active galaxy in the local universe, with a spectacular network of H-alpha filaments, cooling flows, feedback, and prominent star formation in plain view. We propose to use the Globular Cluster (GC) populations in the Perseus region with two-band imaging to pursue three connected goals: the stellar Intracluster Medium (ICM); its Ultra-Diffuse Galaxies (UDGs); and the GC populations in the Perseus core galaxies. Our analysis of a few HST/ACS Archival images covering the Perseus core strongly indicates that a substantial Intragalactic GC component is present. Our newly discovered sample of UDGs in Perseus covers the entire parameter space of these intriguing galaxies and will be thoroughly sampled in our study: are they 'failed' underluminous galaxies with high masses, or are they a mixed bag? For all our goals, the GC populations will act as powerful tracers of the dominant old stellar populations - their metallicity distributions and total populations in the ICM, the UDGs, and the three largest E galaxies in Perseus. As a bonus, we expect to find 200 new Ultra-Compact Dwarfs (UCDs) and half a dozen rare compact ellipticals (cEs). The scientific payoffs will include a broader understanding of the nature and history of all these types of galaxies and their stripped stellar material.

Ages and structural and dynamical parameters of two globular clusters in the M81 group

NASA Astrophysics Data System (ADS)

Ma, Jun; Wang, Song; Wu, Zhenyu; Zhang, TianMeng; Zou, Hu; Zhou, Zhimin; Nie, Jundan; Zhou, Xu; Peng, Xiyang; Wang, Jiali; Wu, Jianghua; Du, Cuihua; Yuan, Qirong

2017-07-01

GC-1 and GC-2 are two globular clusters (GCs) in the remote halo of M81 and M82 in the M81 group discovered by Jang et al. using the Hubble Space Telescope (HST) images. These two GCs were observed as part of the Beijing-Arizona-Taiwan-Connecticut (BATC) Multicolor Sky Survey using 14 intermediate-band filters covering a wavelength range of 4000-10 000 Å. We accurately determine these two clusters' ages and masses by comparing their spectral energy distributions (from 2267 to 20 000 Å, comprising photometric data in the near-ultraviolet of the Galaxy Evolution Explorer, 14 BATC intermediate-band and Two Micron All Sky Survey near-infrared JHKs filters) with theoretical stellar population-synthesis models, resulting in ages of 15.50 ± 3.20 for GC-1 and 15.10 ± 2.70 Gyr for GC-2. The masses of GC-1 and GC-2 obtained here are 1.77-2.04 × 106 and 5.20-7.11 × 106 M⊙, respectively. In addition, the deep observations with the Advanced Camera for Surveys and Wide Field Camera 3 on the HST are used to provide the surface brightness profiles of GC-1 and GC-2. The structural and dynamical parameters are derived from fitting the profiles to three different models; in particular, the internal velocity dispersions of GC-1 and GC-2 are derived, which can be compared with ones obtained based on spectral observations in the future. For the first time, in this paper, the rh versus MV diagram shows that GC-2 is an ultra-compact dwarf in the M81 group.

Do Staphylococcus epidermidis Genetic Clusters Predict Isolation Sources?

PubMed Central

Tolo, Isaiah; Thomas, Jonathan C.; Fischer, Rebecca S. B.; Brown, Eric L.; Gray, Barry M.

2016-01-01

Staphylococcus epidermidis is a ubiquitous colonizer of human skin and a common cause of medical device-associated infections. The extent to which the population genetic structure of S. epidermidis distinguishes commensal from pathogenic isolates is unclear. Previously, Bayesian clustering of 437 multilocus sequence types (STs) in the international database revealed a population structure of six genetic clusters (GCs) that may reflect the species' ecology. Here, we first verified the presence of six GCs, including two (GC3 and GC5) with significant admixture, in an updated database of 578 STs. Next, a single nucleotide polymorphism (SNP) assay was developed that accurately assigned 545 (94%) of 578 STs to GCs. Finally, the hypothesis that GCs could distinguish isolation sources was tested by SNP typing and GC assignment of 154 isolates from hospital patients with bacteremia and those with blood culture contaminants and from nonhospital carriage. GC5 was isolated almost exclusively from hospital sources. GC1 and GC6 were isolated from all sources but were overrepresented in isolates from nonhospital and infection sources, respectively. GC2, GC3, and GC4 were relatively rare in this collection. No association was detected between fdh-positive isolates (GC2 and GC4) and nonhospital sources. Using a machine learning algorithm, GCs predicted hospital and nonhospital sources with 80% accuracy and predicted infection and contaminant sources with 45% accuracy, which was comparable to the results seen with a combination of five genetic markers (icaA, IS256, sesD [bhp], mecA, and arginine catabolic mobile element [ACME]). Thus, analysis of population structure with subgenomic data shows the distinction of hospital and nonhospital sources and the near-inseparability of sources within a hospital. PMID:27076664

From the sun to the Galactic Center: dust, stars and black hole(s)

NASA Astrophysics Data System (ADS)

Fritz, Tobias

2013-07-01

The centers of galaxies are their own ultimate gravitational sinks. Massive black holes and star clusters as well as gas are especially likely to fall into the centers of galaxies by dynamical friction or dissipation. Many galactic centers harbor supermassive black holes (SMBH) and dense nuclear (star) clusters which possibly arrived there by these processes. Nuclear clusters can be formed in situ from gas, or from smaller star clusters which fall to the center. Since the Milky Way harbors both an SMBH and a nuclear cluster, both can be studied best in the Galactic Center (GC), which is the closest galactic nucleus to us. In Chapter 1, I introduce the different components of the Milky Way, and put these into the context of the GC. I then give an overview of relevant properties (e.g. star content and distribution) of the GC. Afterwards, I report the results of four different studies about the GC. In Chapter 2, I analyze the limitations of astrometry, one of the most useful methods for the study of the GC. Thanks to the high density of stars and its relatively small distance from us it is possible to measure the motions of thousands of stars in the GC with images, separated by few years only. I find two main limitations to this method: (1) for bright stars the not perfectly correctable distortion of the camera limits the accuracy, and (2) for the majority of the fainter stars, the main limitation is crowding from the other stars in the GC. The position uncertainty of faint stars is mainly caused by the seeing halos of bright stars. In the very center faint unresolvable stars are also important for the position uncertainty. In Chapter 3, I evaluate the evidence for an intermediate mass black hole in the small candidate cluster IRS13E within the GC. Intermediate mass black holes (IMBHs) have a mass between the two types of confirmed black hole: the stellar remnants and the supermassive black holes in the centers of galaxies. One possibility for! their formation is the collision of stars in a dense young st! ar cluster. Such a cluster could sink to the GC by dynamical friction. There it would consist of few bright stars like IRS13E. Firstly, I analyze the SEDs of the objects in IRS13E. The SEDs of most objects can be explained by pure dust emission. Thus, most objects in IRS13E are pure dust clumps and only three young stars. This reduces the significance of the 'cluster' IRS13E compared to the stellar background. Secondly, I obtain acceleration limits for these three stars. The non-detection of accelerations makes an IMBH an unlikely scenario in IRS13E. However, since its three stars form a comoving association, which is unlikely to form by chance, the nature of IRS13E is not yet settled. In the third study (Chapter 4) I measure and analyze the extinction curve toward the GC. The extinction is a contaminant for GC observations and therefore it is necessary to know the extinction toward the GC to determine the luminosity properties of its stars. I obtain the extinction curve by measuring the flux of the HII region in the GC in several infrared HII lines and in the unextincted radio continuum. I compare these ratios with the ratios expected from recombination physics and obtain extinctions at 22 different lines between 1 and 19 micron. For the K-band I derive A_Ks=2.62+/-0.11. The extinction curve follows a power law with a steep slope of -2.11+/-0.06 shortward of 2.8 micron. At longer wavelengths the extinction is grayer and there are absorption features from ices. The extinction curve is a tool to constrain the properties of cosmic dust between the sun and the GC. The extinction curve cannot be explained by dust grains consisting of carbonaceous and silicate grains only. In addition composite particles, which also contain ices are necessary to fit the extinction curve. In the final part of this thesis (Chapter 5) I look at the properties of most of the stars in the GC. These are the old stars that form the nuclear cluster of the Milky Way. I obtain the mass distribution and the light distribution of these stars. I ! find that the flattening of the stellar distribution increases outside 70''. This indicates that inside a nearly spherical nuclear cluster dominates and that the surrounding light belongs mostly to the nuclear disk. I dissect the light in two components and obtain for the nuclear cluster L_Ks=2.7*10^7 L_sun. I obtain proper motions for more than 10000 stars and radial velocities for more than 2400 stars. Using Jeans modeling I combine velocities and the radial profile to obtain within 100'' (4 pc) a mass of 6.02*10^6 M_sun and a total nuclear cluster mass of 12.88*10^6 M_sun. The Jeans modeling and various other evidence weakly favor a core in the extended mass compared to a cusp. The old star light shows a similar core. The mass to light ratio of the old stars of the nuclear cluster is consistent with the usual initial mass function in the Galaxy. This suggests that most stars in GC formed in the usual way, in a mode different from the origin of the youngest stars there.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jacobson, Heather R.; Pilachowski, Catherine A.; Friel, Eileen D., E-mail: jacob189@msu.edu, E-mail: catyp@astro.indiana.edu, E-mail: edfriel@mac.com

We present a detailed chemical abundance study of evolved stars in 10 open clusters based on Hydra multi-object echelle spectra obtained with the WIYN 3.5 m telescope. From an analysis of both equivalent widths and spectrum synthesis, abundances have been determined for the elements Fe, Na, O, Mg, Si, Ca, Ti, Ni, Zr, and for two of the 10 clusters, Al and Cr. To our knowledge, this is the first detailed abundance analysis for clusters NGC 1245, NGC 2194, NGC 2355, and NGC 2425. These 10 clusters were selected for analysis because they span a Galactocentric distance range R{sub gc}more » {approx} 9-13 kpc, the approximate location of the transition between the inner and outer disks. Combined with cluster samples from our previous work and those of other studies in the literature, we explore abundance trends as a function of cluster R{sub gc}, age, and [Fe/H]. As found previously by us and other studies, the [Fe/H] distribution appears to decrease with increasing R{sub gc} to a distance of {approx}12 kpc and then flattens to a roughly constant value in the outer disk. Cluster average element [X/Fe] ratios appear to be independent of R{sub gc}, although the picture for [O/Fe] is more complicated with a clear trend of [O/Fe] with [Fe/H] and sample incompleteness. Other than oxygen, no other element [X/Fe] exhibits a clear trend with [Fe/H]; likewise, there does not appear to be any strong correlation between abundance and cluster age. We divided clusters into different age bins to explore temporal variations in the radial element distributions. The radial metallicity gradient appears to have flattened slightly as a function of time, as found by other studies. There is also some indication that the transition from the inner disk metallicity gradient to the {approx}constant [Fe/H] distribution of the outer disk occurs at different Galactocentric radii for different age bins. However, interpretation of the time evolution of radial abundance distributions is complicated by the unequal R{sub gc} and [Fe/H] ranges spanned by clusters in different age bins.« less

COCOA code for creating mock observations of star cluster models

NASA Astrophysics Data System (ADS)

Askar, Abbas; Giersz, Mirek; Pych, Wojciech; Dalessandro, Emanuele

2018-04-01

We introduce and present results from the COCOA (Cluster simulatiOn Comparison with ObservAtions) code that has been developed to create idealized mock photometric observations using results from numerical simulations of star cluster evolution. COCOA is able to present the output of realistic numerical simulations of star clusters carried out using Monte Carlo or N-body codes in a way that is useful for direct comparison with photometric observations. In this paper, we describe the COCOA code and demonstrate its different applications by utilizing globular cluster (GC) models simulated with the MOCCA (MOnte Carlo Cluster simulAtor) code. COCOA is used to synthetically observe these different GC models with optical telescopes, perform point spread function photometry, and subsequently produce observed colour-magnitude diagrams. We also use COCOA to compare the results from synthetic observations of a cluster model that has the same age and metallicity as the Galactic GC NGC 2808 with observations of the same cluster carried out with a 2.2 m optical telescope. We find that COCOA can effectively simulate realistic observations and recover photometric data. COCOA has numerous scientific applications that maybe be helpful for both theoreticians and observers that work on star clusters. Plans for further improving and developing the code are also discussed in this paper.

New Constraints on a Complex Relation between Globular Cluster Colors and Environment

NASA Astrophysics Data System (ADS)

Powalka, Mathieu; Puzia, Thomas H.; Lançon, Ariane; Peng, Eric W.; Schönebeck, Frederik; Alamo-Martínez, Karla; Ángel, Simón; Blakeslee, John P.; Côté, Patrick; Cuillandre, Jean-Charles; Duc, Pierre-Alain; Durrell, Patrick; Ferrarese, Laura; Grebel, Eva K.; Guhathakurta, Puragra; Gwyn, S. D. J.; Kuntschner, Harald; Lim, Sungsoon; Liu, Chengze; Lyubenova, Mariya; Mihos, J. Christopher; Muñoz, Roberto P.; Ordenes-Briceño, Yasna; Roediger, Joel; Sánchez-Janssen, Rubén; Spengler, Chelsea; Toloba, Elisa; Zhang, Hongxin

2016-09-01

We present an analysis of high-quality photometry for globular clusters (GCs) in the Virgo cluster core region, based on data from the Next Generation Virgo Cluster Survey (NGVS) pilot field, and in the Milky Way (MW), based on Very Large Telescope/X-Shooter spectrophotometry. We find significant discrepancies in color-color diagrams between sub-samples from different environments, confirming that the environment has a strong influence on the integrated colors of GCs. GC color distributions along a single color are not sufficient to capture the differences we observe in color-color space. While the average photometric colors become bluer with increasing radial distance to the cD galaxy M87, we also find a relation between the environment and the slope and intercept of the color-color relations. A denser environment seems to produce a larger dynamic range in certain color indices. We argue that these results are not due solely to differential extinction, Initial Mass Function variations, calibration uncertainties, or overall age/metallicity variations. We therefore suggest that the relation between the environment and GC colors is, at least in part, due to chemical abundance variations, which affect stellar spectra and stellar evolution tracks. Our results demonstrate that stellar population diagnostics derived from model predictions which are calibrated on one particular sample of GCs may not be appropriate for all extragalactic GCs. These results advocate a more complex model of the assembly history of GC systems in massive galaxies that goes beyond the simple bimodality found in previous decades.

The globular cluster-dark matter halo connection

NASA Astrophysics Data System (ADS)

Boylan-Kolchin, Michael

2017-12-01

I present a simple phenomenological model for the observed linear scaling of the stellar mass in old globular clusters (GCs) with z = 0 halo mass in which the stellar mass in GCs scales linearly with progenitor halo mass at z = 6 above a minimum halo mass for GC formation. This model reproduces the observed MGCs-Mhalo relation at z = 0 and results in a prediction for the minimum halo mass at z = 6 required for hosting one GC: Mmin(z = 6) = 1.07 × 109 M⊙. Translated to z = 0, the mean threshold mass is Mhalo(z = 0) ≈ 2 × 1010 M⊙. I explore the observability of GCs in the reionization era and their contribution to cosmic reionization, both of which depend sensitively on the (unknown) ratio of GC birth mass to present-day stellar mass, ξ. Based on current detections of z ≳ 6 objects with M1500<-17, values of ξ > 10 are strongly disfavoured; this, in turn, has potentially important implications for GC formation scenarios. Even for low values of ξ, some observed high-z galaxies may actually be GCs, complicating estimates of reionization-era galaxy ultraviolet luminosity functions and constraints on dark matter models. GCs are likely important reionization sources if 5 ≲ ξ ≲ 10. I also explore predictions for the fraction of accreted versus in situ GCs in the local Universe and for descendants of systems at the halo mass threshold of GC formation (dwarf galaxies). An appealing feature of the model presented here is the ability to make predictions for GC properties based solely on dark matter halo merger trees.

Disrupted globular clusters and the gamma-ray excess in the Galactic Centre

NASA Astrophysics Data System (ADS)

Fragione, Giacomo; Antonini, Fabio; Gnedin, Oleg Y.

2018-04-01

The Fermi Large Area Telescope has provided the most detailed view towards the Galactic Centre (GC) in high-energy gamma-rays. Besides the interstellar emission and point source contributions, the data suggest a residual diffuse gamma-ray excess. The similarity of its spatial distribution with the expected profile of dark matter has led to claims that this may be evidence for dark matter particle annihilation. Here, we investigate an alternative explanation that the signal originates from millisecond pulsars (MSPs) formed in dense globular clusters and deposited at the GC as a consequence of cluster inspiral and tidal disruption. We use a semi-analytical model to calculate the formation, migration, and disruption of globular clusters in the Galaxy. Our model reproduces the mass of the nuclear star cluster and the present-day radial and mass distribution of globular clusters. For the first time, we calculate the evolution of MSPs from disrupted globular clusters throughout the age of the Galaxy and consistently include the effect of the MSP spin-down due to magnetic-dipole braking. The final gamma-ray amplitude and spatial distribution are in good agreement with the Fermi observations and provide a natural astrophysical explanation for the GC excess.

The Hubble Space Telescope UV Legacy Survey of Galactic Globular Clusters. XV. The Dynamical Clock: Reading Cluster Dynamical Evolution from the Segregation Level of Blue Straggler Stars

NASA Astrophysics Data System (ADS)

Ferraro, F. R.; Lanzoni, B.; Raso, S.; Nardiello, D.; Dalessandro, E.; Vesperini, E.; Piotto, G.; Pallanca, C.; Beccari, G.; Bellini, A.; Libralato, M.; Anderson, J.; Aparicio, A.; Bedin, L. R.; Cassisi, S.; Milone, A. P.; Ortolani, S.; Renzini, A.; Salaris, M.; van der Marel, R. P.

2018-06-01

The parameter A +, defined as the area enclosed between the cumulative radial distribution of blue straggler stars (BSSs) and that of a reference population, is a powerful indicator of the level of BSS central segregation. As part of the Hubble Space Telescope UV Legacy Survey of Galactic globular clusters (GCs), here we present the BSS population and the determination of A + in 27 GCs observed out to about one half-mass radius. In combination with 21 additional clusters discussed in a previous paper, this provides us with a global sample of 48 systems (corresponding to ∼32% of the Milky Way GC population), for which we find a strong correlation between A + and the ratio of cluster age to the current central relaxation time. Tight relations have also been found with the core radius and the central luminosity density, which are expected to change with the long-term cluster dynamical evolution. An interesting relation is emerging between A + and the ratio of the BSS velocity dispersion relative to that of main sequence turn-off stars, which measures the degree of energy equipartition experienced by BSSs in the cluster. These results provide further confirmation that BSSs are invaluable probes of GC internal dynamics and that A + is a powerful dynamical clock.

Footprints in the sand: What can globular clusters tell us about NGC 4753 past?

NASA Astrophysics Data System (ADS)

Caso, Juan Pablo; Bassino, Lilia P.; Gómez, Matías

2015-11-01

NGC 4753 is a bright (MV ≈ 22.3) lenticular galaxy. It is a very interesting target to test different theories of formation of lenticular galaxies, due to its low-density environment and complex structure. We perform the first comprehensive study of NGC 4753 globular cluster system (GCS), using Gemini/Gemini Multi-Object Spectrograph (GMOS) and CTIO (Cerro Tololo Inter-American Observatory)/MOSAIC II images. Our results indicate a rather poor GCS of ≈1000 members. Its azimuthal distribution follows the shape of the galaxy bulge. The GC colour distribution is peculiar, presenting an intermediate subpopulation in addition to blue and red ones. This intermediate subgroup can be explained by a single stellar population with an age of 1.53 Gyr and 0.5-1 Z⊙. The GC-specific frequency SN = 1.3 ± 0.15 is surprisingly low for a galaxy of its class. The GC luminosity function is also peculiar, with an excess of bright GCs compared to the expected Gaussian distribution. The underlying galaxy body has significant substructure, with remnants of spiral arms, dust filaments, and isophote twisting. This, and the fact that NGC 4753 hosted two Type Ia supernovae, support the possibility that the intermediate GC subpopulation may have originated during a recent merger, 13 Gyr ago.

Dissolved Massive Metal-rich Globular Clusters Can Cause the Range of UV Upturn Strengths Found among Early-type Galaxies

NASA Astrophysics Data System (ADS)

Goudfrooij, Paul

2018-04-01

I discuss a scenario in which the ultraviolet (UV) upturn of giant early-type galaxies (ETGs) is primarily due to helium-rich stellar populations that formed in massive metal-rich globular clusters (GCs), which subsequently dissolved in the strong tidal field in the central regions of the massive host galaxy. These massive GCs are assumed to show UV upturns similar to those observed recently in M87, the central giant elliptical galaxy in the Virgo cluster of galaxies. Data taken from the literature reveal a strong correlation between the strength of the UV upturn and the specific frequency of metal-rich GCs in ETGs. Adopting a Schechter function parameterization of GC mass functions, simulations of long-term dynamical evolution of GC systems show that the observed correlation between UV upturn strength and GC specific frequency can be explained by variations in the characteristic truncation mass {{ \\mathcal M }}{{c}} such that {{ \\mathcal M }}{{c}} increases with ETG luminosity in a way that is consistent with observed GC luminosity functions in ETGs. These findings suggest that the nature of the UV upturn in ETGs and the variation of its strength among ETGs are causally related to that of helium-rich populations in massive GCs, rather than intrinsic properties of field stars in massive galactic spheroids. With this in mind, I predict that future studies will find that [N/Fe] decreases with increasing galactocentric radius in massive ETGs, and that such gradients have the largest amplitudes in ETGs with the strongest UV upturns.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Antonini, Fabio, E-mail: antonini@cita.utoronto.ca

We use N-body simulations as well as analytical techniques to study the long-term dynamical evolution of stellar black holes (BHs) at the Galactic center (GC) and to put constraints on their number and mass distribution. Starting from models that have not yet achieved a state of collisional equilibrium, we find that timescales associated with cusp regrowth can be longer than the Hubble time. Our results cast doubts on standard models that postulate high densities of BHs near the GC and motivate studies that start from initial conditions that correspond to well-defined physical models. For the first time, we consider themore » distribution of BHs in a dissipationless model for the formation of the Milky Way nuclear cluster (NC), in which massive stellar clusters merge to form a compact nucleus. We simulate the consecutive merger of ∼10 clusters containing an inner dense sub-cluster of BHs. After the formed NC is evolved for ∼5 Gyr, the BHs do form a steep central cusp, while the stellar distribution maintains properties that resemble those of the GC NC. Finally, we investigate the effect of BH perturbations on the motion of the GC S-stars as a means of constraining the number of the perturbers. We find that reproducing the quasi-thermal character of the S-star orbital eccentricities requires ≳ 1000 BHs within 0.1 pc of Sgr A*. A dissipationless formation scenario for the GC NC is consistent with this lower limit and therefore could reconcile the need for high central densities of BHs (to explain the S-stars orbits) with the 'missing-cusp' problem of the GC giant star population.« less

VizieR Online Data Catalog: The M87 globular cluster system (Strader+, 2011)

NASA Astrophysics Data System (ADS)

Strader, J.; Romanowsky, A. J.; Brodie, J. P.; Spitler, L. R.; Beasley, M. A.; Arnold, J. A.; Tamura, N.; Sharples, R. M.; Arimoto, N.

2012-01-01

We selected GC candidates from the Subaru/Suprime-Cam imaging study of Tamura et al. (2006MNRAS.373..588T). Spectroscopic data were obtained from Keck/DEIMOS in 2007 Mar 20 and 21 and in 2010 Mar 12, from Keck/Low Resolution Spectrometer (LRIS) in 2010 Apr 8-11 and from Multiple Mirror Telescope (MMT)/Hectospec in 2010 Feb 17. We chose to use for our default GC photometry the new gri CFHT/Megacam imaging of M87 published in Harris (2009ApJ...703..939H). (9 data files).

Clustering evolving proteins into homologous families.

PubMed

Chan, Cheong Xin; Mahbob, Maisarah; Ragan, Mark A

2013-04-08

Clustering sequences into groups of putative homologs (families) is a critical first step in many areas of comparative biology and bioinformatics. The performance of clustering approaches in delineating biologically meaningful families depends strongly on characteristics of the data, including content bias and degree of divergence. New, highly scalable methods have recently been introduced to cluster the very large datasets being generated by next-generation sequencing technologies. However, there has been little systematic investigation of how characteristics of the data impact the performance of these approaches. Using clusters from a manually curated dataset as reference, we examined the performance of a widely used graph-based Markov clustering algorithm (MCL) and a greedy heuristic approach (UCLUST) in delineating protein families coded by three sets of bacterial genomes of different G+C content. Both MCL and UCLUST generated clusters that are comparable to the reference sets at specific parameter settings, although UCLUST tends to under-cluster compositionally biased sequences (G+C content 33% and 66%). Using simulated data, we sought to assess the individual effects of sequence divergence, rate heterogeneity, and underlying G+C content. Performance decreased with increasing sequence divergence, decreasing among-site rate variation, and increasing G+C bias. Two MCL-based methods recovered the simulated families more accurately than did UCLUST. MCL using local alignment distances is more robust across the investigated range of sequence features than are greedy heuristics using distances based on global alignment. Our results demonstrate that sequence divergence, rate heterogeneity and content bias can individually and in combination affect the accuracy with which MCL and UCLUST can recover homologous protein families. For application to data that are more divergent, and exhibit higher among-site rate variation and/or content bias, MCL may often be the better choice, especially if computational resources are not limiting.

Galactic Dark Matter Halos and Globular Cluster Populations. III. Extension to Extreme Environments

NASA Astrophysics Data System (ADS)

Harris, William E.; Blakeslee, John P.; Harris, Gretchen L. H.

2017-02-01

The total mass {M}{GCS} in the globular cluster (GC) system of a galaxy is empirically a near-constant fraction of the total mass {M}h\\equiv {M}{bary}+{M}{dark} of the galaxy across a range of 105 in galaxy mass. This trend is radically unlike the strongly nonlinear behavior of total stellar mass M ⋆ versus M h . We discuss extensions of this trend to two more extreme situations: (a) entire clusters of galaxies and (b) the ultra-diffuse galaxies (UDGs) recently discovered in Coma and elsewhere. Our calibration of the ratio {η }M={M}{GCS}/{M}h from normal galaxies, accounting for new revisions in the adopted mass-to-light ratio for GCs, now gives {η }M=2.9× {10}-5 as the mean absolute mass fraction. We find that the same ratio appears valid for galaxy clusters and UDGs. Estimates of {η }M in the four clusters we examine tend to be slightly higher than for individual galaxies, but more data and better constraints on the mean GC mass in such systems are needed to determine if this difference is significant. We use the constancy of {η }M to estimate total masses for several individual cases; for example, the total mass of the Milky Way is calculated to be {M}h=1.1× {10}12 {M}⊙ . Physical explanations for the uniformity of {η }M are still descriptive, but point to a picture in which massive dense star clusters in their formation stages were relatively immune to the feedback that more strongly influenced lower-density regions where most stars form.

Potential of transition metal atoms embedded in buckled monolayer g-C3N4 as single-atom catalysts.

PubMed

Li, Shu-Long; Yin, Hui; Kan, Xiang; Gan, Li-Yong; Schwingenschlögl, Udo; Zhao, Yong

2017-11-15

We use first-principles calculations to systematically explore the potential of transition metal atoms (Sc, Ti, V, Cr, Mn, Fe, Co, Ni, Cu, Ru, Rh, Pd, Ag, Ir, Pt, and Au) embedded in buckled monolayer g-C 3 N 4 as single-atom catalysts. We show that clustering of Sc and Ti on g-C 3 N 4 is thermodynamically impeded and that V, Cr, Mn, and Cu are much less susceptible to clustering than the other TM atoms under investigation. Strong bonding of the transition metal atoms in the cavities of g-C 3 N 4 and high diffusion barriers together are responsible for single-atom fixation. Analysis of the CO oxidation process indicates that embedding of Cr and Mn in g-C 3 N 4 gives rise to promising single-atom catalysts at low temperature.

Cluster analysis of obesity and asthma phenotypes.

PubMed

Sutherland, E Rand; Goleva, Elena; King, Tonya S; Lehman, Erik; Stevens, Allen D; Jackson, Leisa P; Stream, Amanda R; Fahy, John V; Leung, Donald Y M

2012-01-01

Asthma is a heterogeneous disease with variability among patients in characteristics such as lung function, symptoms and control, body weight, markers of inflammation, and responsiveness to glucocorticoids (GC). Cluster analysis of well-characterized cohorts can advance understanding of disease subgroups in asthma and point to unsuspected disease mechanisms. We utilized an hypothesis-free cluster analytical approach to define the contribution of obesity and related variables to asthma phenotype. In a cohort of clinical trial participants (n = 250), minimum-variance hierarchical clustering was used to identify clinical and inflammatory biomarkers important in determining disease cluster membership in mild and moderate persistent asthmatics. In a subset of participants, GC sensitivity was assessed via expression of GC receptor alpha (GCRα) and induction of MAP kinase phosphatase-1 (MKP-1) expression by dexamethasone. Four asthma clusters were identified, with body mass index (BMI, kg/m(2)) and severity of asthma symptoms (AEQ score) the most significant determinants of cluster membership (F = 57.1, p<0.0001 and F = 44.8, p<0.0001, respectively). Two clusters were composed of predominantly obese individuals; these two obese asthma clusters differed from one another with regard to age of asthma onset, measures of asthma symptoms (AEQ) and control (ACQ), exhaled nitric oxide concentration (F(E)NO) and airway hyperresponsiveness (methacholine PC(20)) but were similar with regard to measures of lung function (FEV(1) (%) and FEV(1)/FVC), airway eosinophilia, IgE, leptin, adiponectin and C-reactive protein (hsCRP). Members of obese clusters demonstrated evidence of reduced expression of GCRα, a finding which was correlated with a reduced induction of MKP-1 expression by dexamethasone Obesity is an important determinant of asthma phenotype in adults. There is heterogeneity in expression of clinical and inflammatory biomarkers of asthma across obese individuals. Reduced expression of the dominant functional isoform of the GCR may mediate GC insensitivity in obese asthmatics.

A VST and VISTA study of globular clusters in NGC 253

NASA Astrophysics Data System (ADS)

Cantiello, Michele; Grado, Aniello; Rejkuba, Marina; Arnaboldi, Magda; Capaccioli, Massimo; Greggio, Laura; Iodice, Enrica; Limatola, Luca

2018-03-01

Context. Globular clusters (GCs) are key to our understanding of the Universe, as laboratories of stellar evolution, fossil tracers of the past formation epoch of the host galaxy, and effective distance indicators from local to cosmological scales. Aim. We analyze the properties of the sources in the NGC 253 with the aim of defining an up to date catalog of GC candidates in the galaxy. Given the distance of the galaxy, GCs in NGC 253 are ideal targets for resolved color-magnitude diagram studies of extragalactic GCs with next-generation diffraction limited ground-based telescopes. Methods: Our analysis is based on the science verification data of two ESO survey telescopes, VST and VISTA. Using ugri photometry from VST and JKs from VISTA, GC candidates were selected using as reference the morpho-photometric and color properties of spectroscopically confirmed GCs available in the literature. The strength of the results was verified against available archival HST/ACS data from the GHOSTS survey: all but two of the selected GC candidates appear as star clusters in HST footprints. Results: The adopted GC selection leads to the definition of a sample of ˜350 GC candidates. At visual inspection, we find that 82 objects match all the requirements for selecting GC candidates and 155 are flagged as uncertain GC candidate; however, 110 are unlikely GCs, which are most likely background galaxies. Furthermore, our analysis shows that four of the previously spectroscopically confirmed GCs, i.e., ˜20% of the total spectroscopic sample, are more likely either background galaxies or high-velocity Milky Way stars. The radial density profile of the selected best candidates shows the typically observed r1/4-law radial profile. The analysis of the color distributions reveals only marginal evidence of the presence of color bimodality, which is normally observed in galaxies of similar luminosity. The GC luminosity function does not show the typical symmetry, mainly because of the lack of bright GCs. Part of the bright GCs missing might be at very large galactocentric distances or along the line of sight of the galaxy dusty disk. As an alternative possibility, we speculate that a fraction of low luminosity GC candidates might instead be metal-rich, intermediate age clusters, but fall in a similar color interval of old, metal-poor GCs. Conclusions: Defining a contaminant-free sample of GCs in extragalactic systems is not a straight forward exercise. Using optical and near-IR photometry we purged the list of GCs with spectroscopic membership and photometric GC candidates in NGC 253. Our results show that the use of either spectroscopic or photometric data only does not generally ensure a contaminant-free sample and a combination of both spectroscopy and photometry is preferred. Table 3 is only available at the CDS via anonymous ftp to http://cdsarc.u-strasbg.fr (http://130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/611/A21This work is based on observations taken at the ESO La Silla Paranal Observatory within the VST Science Verification Programme ID 60.A-9286(A) and VISTA Science Verification Programme ID 60.A-9285(A).

Spatial Substructure in the M87 Globular Cluster System

NASA Astrophysics Data System (ADS)

Feng, Yuting; Zhang, Yunhao; Guhathakurta, Puragra; Peng, Eric; Lim, Sungsoon

2018-01-01

Based on the observation of Next Generation Virgo Cluster Survey (NGVS) project, we obtained the u,g,r,i,z and Ks band photometric information of all the objects in the 2 degree × 2 degree area (Pilot Region) around M87, the major subcluster of Virgo. By adapting an Extreme Deconvolution method, which classifies objects into Globular Clusters (GCs), galaxies and foreground stars with their color and morphology data, we got a purer-than-ever GC distribution map with a depth to gmag=25 in Pilot Region. After masking galaxy GCs, smoothing with a 10arcmin Gaussian kernel and performing a flat field correction, we show the GC density map of M87, and got a good sersic fitting of GC radial distribution with a sersic index~2.2 in the central ellipse part (45arcmin semi major axis area of M87). We quantitatively compared our GC sample with a substructure-free mock data set, which was generated from the smoothed density map as well as the sersic fitting, by calculating the 2 point correlation function (TPCF) value in different parts of the map. After separately performing such comparison with mocks based on different galaxy masking radii which vary from 4 times g band effective radius to 10, we found signals of remarkable spatial enhancement in certain directions in the central ellipse of M87, as well as halo substructures shown as lumpiness and holes in the outer region. We present the estimated scales of these substructures from the TPCF results, and, managed to locate them with a statistical analysis of the pixelized GC map. Apart from all results listed above, we discuss the constant, extra-galactic substructure signal at a scale of ~3kpc, which does not diminish with masking sizes, as the evidence of merging and accretion history of M87.

NEW CONSTRAINTS ON A COMPLEX RELATION BETWEEN GLOBULAR CLUSTER COLORS AND ENVIRONMENT

DOE Office of Scientific and Technical Information (OSTI.GOV)

Powalka, Mathieu; Lançon, Ariane; Puzia, Thomas H.

We present an analysis of high-quality photometry for globular clusters (GCs) in the Virgo cluster core region, based on data from the Next Generation Virgo Cluster Survey (NGVS) pilot field, and in the Milky Way (MW), based on Very Large Telescope/X-Shooter spectrophotometry. We find significant discrepancies in color–color diagrams between sub-samples from different environments, confirming that the environment has a strong influence on the integrated colors of GCs. GC color distributions along a single color are not sufficient to capture the differences we observe in color–color space. While the average photometric colors become bluer with increasing radial distance to themore » cD galaxy M87, we also find a relation between the environment and the slope and intercept of the color–color relations. A denser environment seems to produce a larger dynamic range in certain color indices. We argue that these results are not due solely to differential extinction, Initial Mass Function variations, calibration uncertainties, or overall age/metallicity variations. We therefore suggest that the relation between the environment and GC colors is, at least in part, due to chemical abundance variations, which affect stellar spectra and stellar evolution tracks. Our results demonstrate that stellar population diagnostics derived from model predictions which are calibrated on one particular sample of GCs may not be appropriate for all extragalactic GCs. These results advocate a more complex model of the assembly history of GC systems in massive galaxies that goes beyond the simple bimodality found in previous decades.« less

The Next Generation Virgo Cluster Survey (NGVS). XXXII. A Search for Globular Cluster Substructures in the Virgo Galaxy Cluster Core

NASA Astrophysics Data System (ADS)

Powalka, Mathieu; Puzia, Thomas H.; Lançon, Ariane; Longobardi, Alessia; Peng, Eric W.; Duc, Pierre-Alain; Alamo-Martínez, Karla; Blakeslee, John P.; Côté, Patrick; Cuillandre, Jean-Charles; Durrell, Patrick; Eigenthaler, Paul; Ferrarese, Laura; Guhathakurta, Puragra; Gwyn, S. D. J.; Hudelot, Patrick; Liu, Chengze; Mei, Simona; Muñoz, Roberto P.; Roediger, Joel; Sánchez-Janssen, Rubén; Toloba, Elisa; Zhang, Hongxin

2018-03-01

Substructure in globular cluster (GC) populations around large galaxies is expected in galaxy formation scenarios that involve accretion or merger events, and it has been searched for using direct associations between GCs and structure in the diffuse galaxy light, or with GC kinematics. Here, we present a search for candidate substructures in the GC population around the Virgo cD galaxy M87 through the analysis of the spatial distribution of the GC colors. The study is based on a sample of ∼1800 bright GCs with high-quality u, g, r, i, z, K s photometry, selected to ensure a low contamination by foreground stars or background galaxies. The spectral energy distributions of the GCs are associated with formal estimates of age and metallicity, which are representative of its position in a 4D color space relative to standard single stellar population models. Dividing the sample into broad bins based on the relative formal ages, we observe inhomogeneities that reveal signatures of GC substructures. The most significant of these is a spatial overdensity of GCs with relatively young age labels, of diameter ∼0.°1 (∼30 kpc), located to the south of M87. The significance of this detection is larger than about 5σ after accounting for estimates of random and systematic errors. Surprisingly, no large Virgo galaxy is present in this area that could potentially host these GCs. But candidate substructures in the M87 halo with equally elusive hosts have been described based on kinematic studies in the past. The number of GC spectra available around M87 is currently insufficient to clarify the nature of the new candidate substructure.

ABUNDANCES OF RED GIANTS IN OLD OPEN CLUSTERS. V. Be 31, Be 32, Be 39, M 67, NGC 188, AND NGC 1193

DOE Office of Scientific and Technical Information (OSTI.GOV)

Friel, Eileen D.; Jacobson, Heather R.; Pilachowski, Catherine A., E-mail: friel@lowell.ed, E-mail: jacob189@msu.ed, E-mail: catyp@astro.indiana.ed

2010-05-15

We present a detailed abundance analysis based on high resolution spectroscopy for 16 stars in the old open clusters Be 31, Be 32, Be 39, M 67, NGC 188, and NGC 1193. Average cluster metallicities of [Fe/H] = -0.30 {+-} 0.02, -0.21 {+-} 0.01, +0.03 {+-} 0.07, +0.12 {+-} 0.02, and -0.22 {+-} 0.14 (s.d.) have been found for Be 32, Be 39, M 67, NGC 188, and NGC 1193, respectively. The two stars observed in the field of Be 31 have disparate radial velocities and elemental abundance patterns, and also disagree with the possible Be 31 star studied bymore » Yong et al. We conclude that membership has yet to be established for this important cluster, and therefore no element abundances measured here or in previous studies of Be 31 should be taken as definitive cluster abundances. A careful comparison of our results for the clusters M 67 and Be 32 to those of other studies shows general good agreement and identifies systematic differences resulting from different analyses. After combination of our results with those of other studies for clusters spanning the full R{sub gc} range of the thin disk, we explore the abundance distributions as a function of R{sub gc} and age for the elements Fe, O, Na, Mg, Al, Si, Ca, Ti, and Ni. As found in previous work, the [Fe/H] gradient appears to be continuous up to R{sub gc} {approx} 13 kpc before flattening in the outer disk. [X/Fe] ratios show a scatter of 0.2-0.3 dex at all R{sub gc}, for all elements considered. The [X/Fe] values of the six clusters analyzed here are consistent with those of other clusters of similar metallicity and Galactocentric location. Our whole cluster sample shows trends of increasing [O/Fe] and [Al/Fe] with age, although these trends vanish with the inclusion of other clusters from the literature. Larger, homogeneous open cluster samples are necessary to verify the existence and magnitude of abundance trends with age.« less

User’s guide for GcClust—An R package for clustering of regional geochemical data

USGS Publications Warehouse

Ellefsen, Karl J.; Smith, David B.

2016-04-08

GcClust is a software package developed by the U.S. Geological Survey for statistical clustering of regional geochemical data, and similar data such as regional mineralogical data. Functions within the software package are written in the R statistical programming language. These functions, their documentation, and a copy of the user’s guide are bundled together in R’s unit of sharable code, which is called a “package.” The user’s guide includes step-by-step instructions showing how the functions are used to cluster data and to evaluate the clustering results. These functions are demonstrated in this report using test data, which are included in the package.

Variation in essential oil composition of Teucrium hircanicum L. from Iran-A rich source of (E)-α-bergamotene.

PubMed

Rahimi, Mohammad Ali; Nazeri, Vahideh; Andi, Seyed Ali; Sefidkon, Fatemeh

2018-05-21

In present work, the chemical composition of the essential oils obtained from dried flowering aerial parts of Teucrium hircanicum L. (Labiatae) originated from ten wild populations in Iran was analyzed by a GC-FID and GC/MS system. The oil yields varied from 0.04% to 0.1%. A total of thirty-two compounds representing 67.6-97.7% of the oil were identified. The essential oil was found to be rich in sesquiterpene hydrocarpons (E)-α-bergamotene (17.5-86.9%) and (E)-β-farnesene (0.5-21.4%). Of the total identified compounds, sesquiterpene hydrocarpons (36.1-89.7%) were included the greatest essential oil fraction in all the populations, followed by oxygenated monoterpenes (2.2-21.6%), oxygenated sesquiterpenes (0.0-14.4%) and monoterepene hydrocarbons (0.0-9.5%). Hierarchical Cluster Analysis (HCA) and Principal Component Analysis (PCA) were used to distinguish any geographical variations, indicating that the clustering of populations is related to their geographic origin. According to the GC/MS analysis, two chemotypes consisting of (E)-α-bergamotene and (E)-α-bergamotene-(E)-β-farnesene were identified in the populations.

The early dynamical evolution of star clusters near the Galactic Centre

NASA Astrophysics Data System (ADS)

Park, So-Myoung; Goodwin, Simon P.; Kim, Sungsoo S.

2018-07-01

We examine the dynamical evolution of both Plummer sphere and substructured (fractal) star-forming regions in Galactic Centre (GC) strong tidal fields to see what initial conditions could give rise to an Arches-like massive star cluster by ˜2 Myr. We find that any initial distribution has to be contained within its initial tidal radius to survive, which sets a lower limit of the initial density of the Arches of ˜600 M⊙ pc-3 if the Arches is at 30 pc from the GC, or ˜200 M⊙ pc-3 if the Arches is at 100 pc from the GC. Plummer spheres that survive change little other than to dynamically mass segregate, but initially fractal distributions rapidly erase substructure, dynamically mass segregate and by 2 Myr look extremely similar to initial Plummer spheres, therefore it is almost impossible to determine the initial conditions of clusters in strong tidal fields.

The early dynamical evolution of star clusters near the Galactic Centre

NASA Astrophysics Data System (ADS)

Park, So-Myoung; Goodwin, Simon P.; Kim, Sungsoo S.

2018-04-01

We examine the dynamical evolution of both Plummer sphere and substructured (fractal) star forming regions in Galactic Centre (GC) strong tidal fields to see what initial conditions could give rise to an Arches-like massive star cluster by ˜2 Myr. We find that any initial distribution has to be contained within its initial tidal radius to survive, which sets a lower limit of the initial density of the Arches of ˜ 600 M⊙ pc-3 if the Arches is at 30 pc from the GC, or ˜ 200 M⊙ pc-3 if the Arches is at 100 pc from the GC. Plummer spheres that survive change little other than to dynamically mass segregate, but initially fractal distributions rapidly erase substructure, dynamically mass segregate and by 2 Myr look extremely similar to initial Plummer spheres, therefore it is almost impossible to determine the initial conditions of clusters in strong tidal fields.

Genetic association of gastric cancer with miRNA clusters including the cancer-related genes MIR29, MIR25, MIR93 and MIR106: results from the EPIC-EURGAST study.

PubMed

Espinosa-Parrilla, Yolanda; Muñoz, Xavier; Bonet, Catalina; Garcia, Nadia; Venceslá, Adoración; Yiannakouris, Nikos; Naccarati, Alessio; Sieri, Sabina; Panico, Salvatore; Huerta, José M; Barricarte, Aurelio; Menéndez, Virginia; Sánchez-Cantalejo, Emilio; Dorronsoro, Miren; Brennan, Paul; Duarte-Salles, Talita; B As Bueno-de-Mesquita, H; Weiderpass, Elisabete; Lund, Eiliv; Clavel-Chapelon, Françoise; Boutron-Ruault, Marie-Christine; Racine, Antoine; Numans, Mattijs E; Tumino, Rosario; Canzian, Federico; Campa, Daniele; Sund, Malin; Johansson, Mattias; Ohlsson, Bodil; Lindkvist, Björn; Overvad, Kim; Tjønneland, Anne; Palli, Domenico; Travis, Ruth C; Khaw, Kay-Tee; Wareham, Nick; Boeing, Heiner; Nesi, Gabriella; Riboli, Elio; Gonzalez, Carlos A; Sala, Núria

2014-11-01

MicroRNAs (miRNAs) are post-transcriptional gene regulators involved in a wide range of biological processes including tumorigenesis. Deregulation of miRNA pathways has been associated with cancer but the contribution of their genetic variability to this disorder is poorly known. We analyzed the genetic association of gastric cancer (GC) and its anatomical and histological subtypes, with 133 single-nucleotide polymorphisms (SNPs) tagging 15 isolated miRNAs and 24 miRNA clusters potentially involved in cancer, in 365 GC cases and 1,284 matched controls within the European Prospective Investigation into Cancer and Nutrition cohort. Various SNPs were associated with GC under the log-additive model. Furthermore, several of these miRNAs passed the gene-based permutation test when analyzed according to GC subtypes: three tagSNPs of the miR-29a/miR-29b-1 cluster were associated with diffuse subtype (minimum p-value = 1.7 × 10(-4) ; odds ratio, OR = 1.72; 95% confidence interval, CI = 1.30-2.28), two tagSNPs of the miR-25/miR-93/miR-106b cluster were associated with cardia GC (minimum p-value = 5.38 × 10(-3) ; OR = 0.56, 95% CI = 0.37-0.86) and one tagSNP of the miR-363/miR-92a-2/miR-19b-2/miR-20b/miR-18b/miR-106a cluster was associated with noncardia GC (minimum p-value = 5.40 × 10(-3) ; OR = 1.41, 95% CI = 1.12-1.78). Some functionally validated target genes of these miRNAs are implicated in cancer-related processes such as methylation (DNMT3A, DNMT3B), cell cycle (E2F1, CDKN1A, CDKN1C), apoptosis (BCL2L11, MCL1), angiogenesis (VEGFA) and progression (PIK3R1, MYCN). Furthermore, we identified genetic interactions between variants tagging these miRNAs and variants in their validated target genes. Deregulation of the expression of these miRNAs in GC also supports our findings, altogether suggesting for the fist time that genetic variation in MIR29, MIR25, MIR93 and MIR106b may have a critical role in genetic susceptibility to GC and could contribute to the molecular mechanisms of gastric carcinogenesis. © 2014 UICC.

HUBBLE SPACE TELESCOPE SNAPSHOT SEARCH FOR PLANETARY NEBULAE IN GLOBULAR CLUSTERS OF THE LOCAL GROUP

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bond, Howard E., E-mail: heb11@psu.edu

2015-04-15

Single stars in ancient globular clusters (GCs) are believed incapable of producing planetary nebulae (PNs), because their post-asymptotic-giant-branch evolutionary timescales are slower than the dissipation timescales for PNs. Nevertheless, four PNs are known in Galactic GCs. Their existence likely requires more exotic evolutionary channels, including stellar mergers and common-envelope binary interactions. I carried out a snapshot imaging search with the Hubble Space Telescope (HST) for PNs in bright Local Group GCs outside the Milky Way. I used a filter covering the 5007 Å nebular emission line of [O iii], and another one in the nearby continuum, to image 66 GCs.more » Inclusion of archival HST frames brought the total number of extragalactic GCs imaged at 5007 Å to 75, whose total luminosity slightly exceeds that of the entire Galactic GC system. I found no convincing PNs in these clusters, aside from one PN in a young M31 cluster misclassified as a GC, and two PNs at such large angular separations from an M31 GC that membership is doubtful. In a ground-based spectroscopic survey of 274 old GCs in M31, Jacoby et al. found three candidate PNs. My HST images of one of them suggest that the [O iii] emission actually arises from ambient interstellar medium rather than a PN; for the other two candidates, there are broadband archival UV HST images that show bright, blue point sources that are probably the PNs. In a literature search, I also identified five further PN candidates lying near old GCs in M31, for which follow-up observations are necessary to confirm their membership. The rates of incidence of PNs are similar, and small but nonzero, throughout the GCs of the Local Group.« less

Tracing the assembly history of NGC 1395 through its Globular Cluster System

NASA Astrophysics Data System (ADS)

Escudero, Carlos G.; Faifer, Favio R.; Smith Castelli, Analía V.; Forte, Juan C.; Sesto, Leandro A.; González, Nélida M.; Scalia, María C.

2018-03-01

We used deep Gemini-South/GMOS g΄r΄i΄z΄ images to study the globular cluster (GC) system of the massive elliptical galaxy NGC 1395, located in the Eridanus supergroup. The photometric analysis of the GC candidates reveals a clear colour bimodality distribution, indicating the presence of `blue' and `red' GC subpopulations. While a negative radial colour gradient is detected in the projected spatial distribution of the red GCs, the blue GCs display a shallow colour gradient. The blue GCs also display a remarkable shallow and extended surface density profile, suggesting a significant accretion of low-mass satellites in the outer halo of the galaxy. In addition, the slope of the projected spatial distribution of the blue GCs in the outer regions of the galaxy, is similar to that of the X-ray halo emission. Integrating up to 165 kpc the profile of the projected spatial distribution of the GCs, we estimated a total GC population and specific frequency of 6000 ± 1100 and SN = 7.4 ± 1.4, respectively. Regarding NGC 1395 itself, the analysis of the deep Gemini/GMOS images shows a low surface brightness umbrella-like structure indicating, at least, one recent merger event. Through relations recently published in the literature, we obtained global parameters, such as Mstellar = 9.32 × 1011 M⊙ and Mh = 6.46 × 1013 M⊙. Using public spectroscopic data, we derive stellar population parameters of the central region of the galaxy by the full spectral fitting technique. We have found that this region seems to be dominated for an old stellar population, in contrast to findings of young stellar populations from the literature.

Role of miR-191/425 cluster in tumorigenesis and diagnosis of gastric cancer.

PubMed

Peng, Wei-Zhao; Ma, Ren; Wang, Fang; Yu, Jia; Liu, Zhi-Bin

2014-03-05

Gastric cancer (GC) is among the most frequent types of cancer worldwide. Therefore, understanding the biology of GC tumorigenesis is important for appropriate diagnosis and patient surveillance. The miR-191/425 cluster has been reported to be overexpressed in various human cancers, but the tumorigenic role and clinical significance of miR-191/425 overexpression in gastric carcinogenesis is currently undefined. In this study, the expression of miR-191 and miR-425 in GC tissue and serum was assessed, and the relationship between miRNA expression and clinicopathological data was analyzed. We found that miR-191 and miR-425 were both significantly increased in human GC tissues relative to adjacent normal controls. In addition, miR-191 levels correlated with GC tumor stage and metastatic state. Furthermore, the level of serum miR-191 was significantly higher in the GC group than in the control group when using serum miR-16 as an endogenous control. Finally, inhibition of miR-191 or miR-425 in the GC cell lines HGC-27 not only reduced cell proliferation and cell cycle progression but also impaired cell migration and invasion. Taken together, our results revealed the oncogenic roles of miR-191 and miR-425 in gastric carcinogenesis, and indicated the potential use of serum miR-191 as a novel and stable biomarker for GC diagnosis.

Detection Method of TOXOPLASMA GONDII Tachyzoites

NASA Astrophysics Data System (ADS)

Eassa, Souzan; Bose, Chhanda; Alusta, Pierre; Tarasenko, Olga

2011-06-01

Tachyzoites are considered to be the most important stage of Toxoplasma gondii which causes toxoplasmosis. T. gondii is, an obligate intracellular parasite which infects a wide range of cells. The present study was designed to develop a method for an early detection of T. gondii tachyzoites. The method comprised of a binding assay which was analyzed using principal component and cluster analysis. Our data showed that glycoconjugates GC1, GC2, GC3 and GC10 exhibit a significantly higher binding affinity for T. gondii tachyzoites as compared to controls (T. gondii only, PAA only, GC 1, 2, 3, and 10 only).

Effects of Non-Clustering of Refugees.

ERIC Educational Resources Information Center

Conick, John E.

1983-01-01

Describes the approach to resettlement for recently arrived refugees implemented within the state of South Carolina. Suggests that non-clustering of refugees leads to quick acculturation if there is wide community support, but that certain services are more readily available when refugees are clustered. (GC)

THE OPTICAL COLORS OF GIANT ELLIPTICAL GALAXIES AND THEIR METAL-RICH GLOBULAR CLUSTERS INDICATE A BOTTOM-HEAVY INITIAL MASS FUNCTION

DOE Office of Scientific and Technical Information (OSTI.GOV)

Goudfrooij, Paul; Diederik Kruijssen, J. M., E-mail: goudfroo@stsci.edu, E-mail: kruijssen@mpa-garching.mpg.de

2013-01-10

We report a systematic and statistically significant offset between the optical (g - z or B - I) colors of seven massive elliptical galaxies and the mean colors of their associated massive metal-rich globular clusters (GCs) in the sense that the parent galaxies are redder by {approx}0.12-0.20 mag at a given galactocentric distance. However, spectroscopic indices in the blue indicate that the luminosity-weighted ages and metallicities of such galaxies are equal to that of their averaged massive metal-rich GCs at a given galactocentric distance, to within small uncertainties. The observed color differences between the red GC systems and their parentmore » galaxies cannot be explained by the presence of multiple stellar generations in massive metal-rich GCs, as the impact of the latter to the populations' integrated g - z or B - I colors is found to be negligible. However, we show that this paradox can be explained if the stellar initial mass function (IMF) in these massive elliptical galaxies was significantly steeper at subsolar masses than canonical IMFs derived from star counts in the solar neighborhood, with the GC colors having become bluer due to dynamical evolution, causing a significant flattening of the stellar MF of the average surviving GC.« less

The colour-magnitude relation of globular clusters in Centaurus and Hydra. Constraints on star cluster self-enrichment with a link to massive Milky Way globular clusters

NASA Astrophysics Data System (ADS)

Fensch, J.; Mieske, S.; Müller-Seidlitz, J.; Hilker, M.

2014-07-01

Aims: We investigate the colour-magnitude relation of metal-poor globular clusters, the so-called blue tilt, in the Hydra and Centaurus galaxy clusters and constrain the primordial conditions for star cluster self-enrichment. Methods: We analyse U,I photometry for about 2500 globular clusters in the central regions of Hydra and Centaurus, based on VLT/FORS1 data. We measure the relation between mean colour and luminosity for the blue and red subpopulation of the globular cluster samples. We convert these relations into mass-metallicity space and compare the obtained GC mass-metallicity relation with predictions from the star cluster self-enrichment model by Bailin & Harris (2009, ApJ, 695, 1082). For this we include effects of dynamical and stellar evolution and a physically well motivated primordial mass-radius scaling. Results: We obtain a mass-metallicity scaling of Z ∝ M0.27 ± 0.05 for Centaurus GCs and Z ∝ M0.40 ± 0.06 for Hydra GCs, consistent with the range of observed relations in other environments. We find that the GC mass-metallicity relation already sets in at present-day masses of a few and is well established in the luminosity range of massive MW clusters like ω Centauri. The inclusion of a primordial mass-radius scaling of star clusters significantly improves the fit of the self-enrichment model to the data. The self-enrichment model accurately reproduces the observed relations for average primordial half-light radii rh ~ 1-1.5 pc, star formation efficiencies f⋆ ~ 0.3-0.4, and pre-enrichment levels of [Fe/H] - 1.7 dex. The slightly steeper blue tilt for Hydra can be explained either by a ~30% smaller average rh at fixed f⋆ ~ 0.3, or analogously by a ~20% smaller f⋆ at fixed rh ~ 1.5 pc. Within the self-enrichment scenario, the observed blue tilt implies a correlation between GC mass and width of the stellar metallicity distribution. We find that this implied correlation matches the trend of width with GC mass measured in Galactic GCs, including extreme cases like ω Centauri and M 54. Conclusions: First, we found that a primordial star cluster mass-radius relation provides a significant improvement to the self-enrichment model fits. Second we show that broadened metallicity distributions as found in some massive MW globular clusters may have arisen naturally from self-enrichment processes, without the need of a dwarf galaxy progenitor.

microRNA-379 couples glucocorticoid hormones to dysfunctional lipid homeostasis

PubMed Central

de Guia, Roldan M; Rose, Adam J; Sommerfeld, Anke; Seibert, Oksana; Strzoda, Daniela; Zota, Annika; Feuchter, Yvonne; Krones-Herzig, Anja; Sijmonsma, Tjeerd; Kirilov, Milen; Sticht, Carsten; Gretz, Norbert; Dallinga-Thie, Geesje; Diederichs, Sven; Klöting, Nora; Blüher, Matthias; Berriel Diaz, Mauricio; Herzig, Stephan

2015-01-01

In mammals, glucocorticoids (GCs) and their intracellular receptor, the glucocorticoid receptor (GR), represent critical checkpoints in the endocrine control of energy homeostasis. Indeed, aberrant GC action is linked to severe metabolic stress conditions as seen in Cushing's syndrome, GC therapy and certain components of the Metabolic Syndrome, including obesity and insulin resistance. Here, we identify the hepatic induction of the mammalian conserved microRNA (miR)-379/410 genomic cluster as a key component of GC/GR-driven metabolic dysfunction. Particularly, miR-379 was up-regulated in mouse models of hyperglucocorticoidemia and obesity as well as human liver in a GC/GR-dependent manner. Hepatocyte-specific silencing of miR-379 substantially reduced circulating very-low-density lipoprotein (VLDL)-associated triglyceride (TG) levels in healthy mice and normalized aberrant lipid profiles in metabolically challenged animals, mediated through miR-379 effects on key receptors in hepatic TG re-uptake. As hepatic miR-379 levels were also correlated with GC and TG levels in human obese patients, the identification of a GC/GR-controlled miRNA cluster not only defines a novel layer of hormone-dependent metabolic control but also paves the way to alternative miRNA-based therapeutic approaches in metabolic dysfunction. PMID:25510864

Radial Velocities of RR Lyrae Stars in and around NGC 6441

NASA Astrophysics Data System (ADS)

Kunder, Andrea; Mills, Arthur; Edgecomb, Joseph; Thomas, Mathew; Schilter, Levi; Boyle, Craig; Parker, Stephen; Bellevue, Gordon; Rich, R. Michael; Koch, Andreas; Johnson, Christian I.; Nataf, David M.

2018-04-01

Detailed elemental abundance patterns of metal-poor ([Fe/H] ∼ ‑1 dex) stars in the Galactic bulge indicate that a number of them are consistent with globular cluster (GC) stars and may be former members of dissolved GCs. This would indicate that a few per cent of the Galactic bulge was built up from destruction and/or evaporation of GCs. Here, an attempt is made to identify such presumptive stripped stars originating from the massive, inner Galaxy GC NGC 6441 using its rich RR Lyrae variable star (RRL) population. We present radial velocities of 40 RRLs centered on the GC NGC 6441. All 13 of the RRLs observed within the cluster tidal radius have velocities consistent with cluster membership, with an average radial velocity of 24 ± 5 km s‑1 and a star-to-star scatter of 11 km s‑1. This includes two new RRLs that were previously not associated with the cluster. Eight RRLs with radial velocities consistent with cluster membership but up to three time the distance from the tidal radius are also reported. These potential extra-tidal RRLs also have exceptionally long periods, which is a curious characteristic of the NGC 6441 RRL population that hosts RRLs with periods longer than seen anywhere else in the Milky Way. As expected of stripped cluster stars, most are inline with the cluster’s orbit. Therefore, either the tidal radius of NGC 6441 is underestimated and/or we are seeing dissolving cluster stars stemming from NGC 6441 that are building up the old spheroidal bulge.

A survey for dwarf galaxy remnants around 14 globular clusters in the outer halo

NASA Astrophysics Data System (ADS)

Sollima, A.; Martínez Delgado, D.; Muñoz, R. R.; Carballo-Bello, J. A.; Valls-Gabaud, D.; Grebel, E. K.; Santana, F. A.; Côté, P.; Djorgovski, S. G.

2018-06-01

We report the results of a systematic photometric survey of the peripheral regions of a sample of 14 globular clusters in the outer halo of the Milky Way at distances dGC > 25 kpc from the Galactic Centre. The survey is aimed at searching for the remnants of the host satellite galaxies where these clusters could originally have been formed before being accreted on to the Galactic halo. The limiting surface brightness varies within our sample, but reaches μV, lim = 30-32 mag arcsec-2. For only two globular clusters (NGC 7492 and Whiting 1; already suggested to be associated with the Sagittarius galaxy), we detect extended stellar populations that cannot be associated with either the clusters themselves or with the surrounding Galactic field population. We show that the lack of substructures around globular clusters at these Galactocentric distances is still compatible with the predictions of cosmological simulations whereby in the outer halo the Galactic globular cluster system is built up through hierarchical accretion at early epochs.

First confirmed ultra-compact dwarf galaxy in the NGC 5044 group

NASA Astrophysics Data System (ADS)

Faifer, Favio R.; Escudero, Carlos G.; Scalia, María C.; Smith Castelli, Analía V.; Norris, Mark; De Rossi, María E.; Forte, Juan C.; Cellone, Sergio A.

2017-03-01

Context. Ultra-compact dwarfs (UCDs) are stellar systems displaying colours and metallicities between those of globular clusters (GCs) and early-type dwarf galaxies, as well as sizes of Reff ≲ 100 pc and luminosities in the range -13.5

On the physical nature of globular cluster candidates in the Milky Way bulge

NASA Astrophysics Data System (ADS)

Piatti, Andrés E.

2018-06-01

We present results from 2MASS JKs photometry on the physical reality of recently reported globular cluster (GC) candidates in the Milky Way (MW) bulge. We relied our analysis on photometric membership probabilities that allowed us to distinguish real stellar aggregates from the composite field star population. When building colour-magnitude diagrams and stellar density maps for stars at different membership probability levels, the genuine GC candidate populations are clearly highlighted. We then used the tip of the red giant branch (RGB) as distance estimator, resulting in heliocentric distances that place many of the objects in regions near the MW bulge, where no GC had been previously recognized. Some few GC candidates resulted to be MW halo/disc objects. Metallicities estimated from the standard RGB method are in agreement with the values expected according to the position of the GC candidates in the Galaxy. Finally, we derived, for the first time, their structural parameters. We found that the studied objects have core, half-light, and tidal radii in the ranges spanned by the population of known MW GCs. Their internal dynamical evolutionary stages will be described properly when their masses are estimated.

Epigenetic changes in localized gastric cancer: the role of RUNX3 in tumor progression and the immune microenvironment

PubMed Central

Ibarrola-Villava, Maider; Peña-Chilet, María; Mongort, Cristina; Martinez-Ciarpaglini, Carolina; Navarro, Lara; Gambardella, Valentina; Castillo, Josefa; Roselló, Susana; Navarro, Samuel; Ribas, Gloria; Cervantes, Andrés

2016-01-01

Gastric cancer (GC) pathogenesis involves genetic, epigenetic and environmental factors. Epigenetic alterations, such as DNA methylation are considered pivotal in the inactivation of tumor-related genes. We assessed a methylation panel of 5 genes to study their association to GC progression and microsatellite instability (MSI), and studied the role of RUNX3 in GC pathogenesis and the tumor immune microenvironment. The methylation status of 47 promoter-CpG islands was studied through MALDI-TOF mass spectrometry analysis in 35 Microsatellite stable (MSS) GC, 26 MSI, and 18 cancer-free samples (CFS), and 6 MSS GC and 4 MSI GC cell lines. We also studied RUNX3 expression by immunohistochemistry (IHC) in 40 samples, and validated differences in methylation levels between tumor, normal, and immune tissue in 14 additional samples. Unsupervised hierarchical clustering of methylation levels revealed no distinct subgroups between MSI and MSS samples or cell lines. CFSs clustered together showing higher levels of RUNX3 methylation compared to GC samples. RUNX3 showed protein silencing in cancer and normal mucosa, compared to inflammatory peritumoural infiltrate in almost all cases, showing a non-lymphocytic predominant pattern and being correlated with epigenetic silencing. Our results show aberrant promoter's methylation in APC, CDH1, CDKN2A, MLH1 and RUNX3 associated with GC, as well as a non-lymphocytic predominant infiltrate with high expression of RUNX3. Deep study of RUNX3 inflammation signaling could help in understanding inflammation and immune activation in the tumor microenvironment. PMID:27566570

Low-end mass function of the Quintuplet cluster

NASA Astrophysics Data System (ADS)

Shin, Jihye; Kim, Sungsoo S.

2016-08-01

The Quintuplet and Arches clusters, which were formed in the harsh environment of the Galactic Centre (GC) a few million years ago, have been excellent targets for studying the effects of a star-forming environment on the initial mass function (IMF). In order to estimate the shape of the low-end IMF of the Arches cluster, Shin & Kim devised a novel photometric method that utilizes pixel intensity histograms (PIHs) of the observed images. Here, we apply the PIH method to the Quintuplet cluster and estimate the shape of its low-end IMF below the magnitude of completeness limit as set by conventional photometry. We found that the low-end IMF of the Quintuplet is consistent with that found for the Arches cluster-Kroupa MF, with a significant number of low-mass stars below 1 M⊙. We conclude that the most likely IMFs of the Quintuplet and the Arches clusters are not too different from the IMFs found in the Galactic disc. We also find that the observed PIHs and stellar number density profiles of both clusters are best reproduced when the clusters are assumed to be at three-dimensional distances of approximately 100 pc from the GC.

Characteristic expression of fukutin in gastric cancer among atomic bomb survivors.

PubMed

Pham, Trang T B; Oue, Naohide; Yamamoto, Manabu; Fujihara, Megumu; Ishida, Teruyoshi; Mukai, Shoichiro; Sakamoto, Naoya; Sentani, Kazuhiro; Yasui, Wataru

2017-02-01

Approximately 70 years have passed since the atomic bombs were dropped on Nagasaki and Hiroshima. To elucidate potential biomarkers and possible mechanisms of radiation-induced cancer, the expression of FKTN , which encodes fukutin protein and causes Fukuyama-type congenital muscular dystrophy, was analyzed in gastric cancer (GC) tissue samples from atomic bomb survivors. Expression of cluster of differentiation (CD) 10 was also evaluated, as it has previously been observed that positive fukutin expression was frequently noted in CD10-positive GC cases. In the first cohort from Hiroshima Red Cross Hospital and Atomic-Bomb Survivors Hospital (Hiroshima, Japan; n=92), 102 (53%) of the GC cases were positive for fukutin. Expression of fukutin was not associated with exposure status, but was associated with CD10 expression (P=0.0001). The second cohort was from Hiroshima University Hospital (Hiroshima, Japan; n=86), and these patients were also in the Life Span Study cohort, in which atomic bomb radiation doses were precisely estimated using the DS02 system. Expression of fukutin was detected in 58 (67%) of GC cases. GC cases positive for fukutin were observed more frequently in the low dose-exposed group than in the high dose-exposed group (P=0.0001). Further studies with a larger cohort, including precise radiation dose estimation, may aid in clarifying whether fukutin could serve as a potential biomarker to define radiation-induced GC in atomic-bomb survivors.

Characteristic expression of fukutin in gastric cancer among atomic bomb survivors

PubMed Central

Pham, Trang T.B.; Oue, Naohide; Yamamoto, Manabu; Fujihara, Megumu; Ishida, Teruyoshi; Mukai, Shoichiro; Sakamoto, Naoya; Sentani, Kazuhiro; Yasui, Wataru

2017-01-01

Approximately 70 years have passed since the atomic bombs were dropped on Nagasaki and Hiroshima. To elucidate potential biomarkers and possible mechanisms of radiation-induced cancer, the expression of FKTN, which encodes fukutin protein and causes Fukuyama-type congenital muscular dystrophy, was analyzed in gastric cancer (GC) tissue samples from atomic bomb survivors. Expression of cluster of differentiation (CD) 10 was also evaluated, as it has previously been observed that positive fukutin expression was frequently noted in CD10-positive GC cases. In the first cohort from Hiroshima Red Cross Hospital and Atomic-Bomb Survivors Hospital (Hiroshima, Japan; n=92), 102 (53%) of the GC cases were positive for fukutin. Expression of fukutin was not associated with exposure status, but was associated with CD10 expression (P=0.0001). The second cohort was from Hiroshima University Hospital (Hiroshima, Japan; n=86), and these patients were also in the Life Span Study cohort, in which atomic bomb radiation doses were precisely estimated using the DS02 system. Expression of fukutin was detected in 58 (67%) of GC cases. GC cases positive for fukutin were observed more frequently in the low dose-exposed group than in the high dose-exposed group (P=0.0001). Further studies with a larger cohort, including precise radiation dose estimation, may aid in clarifying whether fukutin could serve as a potential biomarker to define radiation-induced GC in atomic-bomb survivors. PMID:28356981

High GC Content Cas9-Mediated Genome-Editing and Biosynthetic Gene Cluster Activation in Saccharopolyspora erythraea.

PubMed

Liu, Yong; Wei, Wen-Ping; Ye, Bang-Ce

2018-05-18

The overexpression of bacterial secondary metabolite biosynthetic enzymes is the basis for industrial overproducing strains. Genome editing tools can be used to further improve gene expression and yield. Saccharopolyspora erythraea produces erythromycin, which has extensive clinical applications. In this study, the CRISPR-Cas9 system was used to edit genes in the S. erythraea genome. A temperature-sensitive plasmid containing the PermE promoter, to drive Cas9 expression, and the Pj23119 and PkasO promoters, to drive sgRNAs, was designed. Erythromycin esterase, encoded by S. erythraea SACE_1765, inactivates erythromycin by hydrolyzing the macrolactone ring. Sequencing and qRT-PCR confirmed that reporter genes were successfully inserted into the SACE_1765 gene. Deletion of SACE_1765 in a high-producing strain resulted in a 12.7% increase in erythromycin levels. Subsequent PermE- egfp knock-in at the SACE_0712 locus resulted in an 80.3% increase in erythromycin production compared with that of wild type. Further investigation showed that PermE promoter knock-in activated the erythromycin biosynthetic gene clusters at the SACE_0712 locus. Additionally, deletion of indA (SACE_1229) using dual sgRNA targeting without markers increased the editing efficiency to 65%. In summary, we have successfully applied Cas9-based genome editing to a bacterial strain, S. erythraea, with a high GC content. This system has potential application for both genome-editing and biosynthetic gene cluster activation in Actinobacteria.

THE ARCHES CLUSTER: EXTENDED STRUCTURE AND TIDAL RADIUS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hosek, Matthew W. Jr.; Lu, Jessica R.; Anderson, Jay

At a projected distance of ∼26 pc from Sgr A*, the Arches cluster provides insight into star formation in the extreme Galactic center (GC) environment. Despite its importance, many key properties, such as the cluster’s internal structure and orbital history, are not well known. We present an astrometric and photometric study of the outer region of the Arches cluster ( R > 6.″25) using Hubble Space Telescope WFC3IR. Using proper motions, we calculate membership probabilities for stars down to F153M = 20 mag (∼2.5 M {sub ⊙}) over a 120″ × 120″ field of view, an area 144 times largermore » than previous astrometric studies of the cluster. We construct the radial profile of the Arches to a radius of 75″ (∼3 pc at 8 kpc), which can be well described by a single power law. From this profile we place a 3 σ lower limit of 2.8 pc on the observed tidal radius, which is larger than the predicted tidal radius (1–2.5 pc). Evidence of mass segregation is observed throughout the cluster, and no tidal tail structures are apparent along the orbital path. The absence of breaks in the profile suggests that the Arches has not likely experienced its closest approach to the GC between ∼0.2 and 1 Myr ago. If accurate, this constraint indicates that the cluster is on a prograde orbit and is located in front of the sky plane that intersects Sgr A*. However, further simulations of clusters in the GC potential are required to interpret the observed profile with more confidence.« less

Multiple Stellar Populations in Star Clusters

NASA Astrophysics Data System (ADS)

Piotto, G.

2013-09-01

For half a century it had been astronomical dogma that a globular cluster (GC) consists of stars born at the same time out of the same material, and this doctrine has borne rich fruits. In recent years, high resolution spectroscopy and high precision photometry (from space and ground-based observations) have shattered this paradigm, and the study of GC populations has acquired a new life that is now moving it in new directions. Evidence of multiple stellar populations have been identified in the color-magnitude diagrams of several Galactic and Magellanic Cloud GCs where they had never been imagined before.

Spectroscopic study of the elusive globular cluster ESO452-SC11 and its surroundings

NASA Astrophysics Data System (ADS)

Koch, Andreas; Hansen, Camilla Juul; Kunder, Andrea

2017-08-01

Globular clusters (GCs) have long been recognized as being amongst the oldest objects in the Galaxy. As such, they have the potential of playing a pivotal role in deciphering the Milky Way's early history. Here we present the first spectroscopic study of the low-mass system ESO452-SC11 using the AAOmega multifibre spectrograph at medium resolution. Given the stellar sparsity of this object and the high degree of foreground contamination due to its location toward the Galactic bulge, very few details are known for this cluster - there is no consensus, for instance, about its age, metallicity, or its association with the disk or bulge. We identify five member candidates based on common radial velocity, calcium-triplet metallicity, and position within the GC. Using spectral synthesis, the measurement of accurate Fe-abundances from Fe-lines, and abundances of several α-, Fe-peak, and neutron-capture elements (Si, Ca, Ti,Cr, Co, Ni, Sr, and Eu) is carried out, albeit with large uncertainties. We find that two of the five cluster candidates are likely non-members, as they have deviating iron abundances and [α/Fe] ratios. The cluster mean heliocentric velocity is 19 ± 2 km s-1 with a velocity dispersion of 2.8 ± 3.4 km s-1, a low value in line with its sparse nature and low mass. The mean Fe-abundance from spectral fitting is -0.88 ± 0.03 dex, where the spread is driven by observational errors. Furthermore, the α-elements of the GC candidates are marginally lower than expected for the bulge at similar metallicities. As spectra of hundreds of stars were collected in a 2-degree field centered on ESO452-SC11, a detailed abundance study of the surrounding field was also enabled. The majority of the non-members have slightly higher [α/Fe] ratios, in line with the typical nearby bulge population. A subset of the spectra with measured Fe-peak abundance ratios shows a large scatter around solar values, albeit with large uncertainties. Furthermore, our study provides the first systematic measurements of strontium abundances in a Galactic bulge GC. Here, the Eu and Sr abundances of the GC candidates are broadly consistent with a disk or bulge association. Recent proper motions and our orbital calculations place ESO452 on an elliptical orbit in the central 3 kpc of the Milky Way, establishing a firm connection with the bulge. Finally, while the radial velocities and preferential position of a dozen of stars outside the GC radius appear to imply the presence of extra-tidal stars, their significantly different chemical composition refutes this hypothesis. Full Tables 2-5 are available at the CDS via anonymous ftp to http://cdsarc.u-strasbg.fr (http://130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/604/A41

A Revised Velocity for the Globular Cluster GC-98 in the Ultra Diffuse Galaxy NGC 1052-DF2

NASA Astrophysics Data System (ADS)

van Dokkum, Pieter; Cohen, Yotam; Danieli, Shany; Romanowsky, Aaron; Abraham, Roberto; Brodie, Jean; Conroy, Charlie; Kruijssen, J. M. Diederik; Lokhorst, Deborah; Merritt, Allison; Mowla, Lamiya; Zhang, Jielai

2018-06-01

We recently published velocity measurements of luminous globular clusters in the galaxy NGC1052-DF2, concluding that it lies far off the canonical stellar mass - halo mass relation. Here we present a revised velocity for one of the globular clusters, GC-98, and a revised velocity dispersion measurement for the galaxy. We find that the intrinsic dispersion $\\sigma=5.6^{+5.2}_{-3.8}$ km/s using Approximate Bayesian Computation, or $\\sigma=7.8^{+5.2}_{-2.2}$ km/s using the likelihood. The expected dispersion from the stars alone is ~7 km/s. Responding to a request from the Editors of ApJ Letters and RNAAS, we also briefly comment on the recent analysis of our measurements by Martin et al. (2018).

DNA barcoding Australia's fish species

PubMed Central

Ward, Robert D; Zemlak, Tyler S; Innes, Bronwyn H; Last, Peter R; Hebert, Paul D.N

2005-01-01

Two hundred and seven species of fish, mostly Australian marine fish, were sequenced (barcoded) for a 655 bp region of the mitochondrial cytochrome oxidase subunit I gene (cox1). Most species were represented by multiple specimens, and 754 sequences were generated. The GC content of the 143 species of teleosts was higher than the 61 species of sharks and rays (47.1% versus 42.2%), largely due to a higher GC content of codon position 3 in the former (41.1% versus 29.9%). Rays had higher GC than sharks (44.7% versus 41.0%), again largely due to higher GC in the 3rd codon position in the former (36.3% versus 26.8%). Average within-species, genus, family, order and class Kimura two parameter (K2P) distances were 0.39%, 9.93%, 15.46%, 22.18% and 23.27%, respectively. All species could be differentiated by their cox1 sequence, although single individuals of each of two species had haplotypes characteristic of a congener. Although DNA barcoding aims to develop species identification systems, some phylogenetic signal was apparent in the data. In the neighbour-joining tree for all 754 sequences, four major clusters were apparent: chimaerids, rays, sharks and teleosts. Species within genera invariably clustered, and generally so did genera within families. Three taxonomic groups—dogfishes of the genus Squalus, flatheads of the family Platycephalidae, and tunas of the genus Thunnus—were examined more closely. The clades revealed after bootstrapping generally corresponded well with expectations. Individuals from operational taxonomic units designated as Squalus species B through F formed individual clades, supporting morphological evidence for each of these being separate species. We conclude that cox1 sequencing, or ‘barcoding’, can be used to identify fish species. PMID:16214743

Prospects for detection of intermediate-mass black holes in globular clusters using integrated-light spectroscopy

NASA Astrophysics Data System (ADS)

de Vita, R.; Trenti, M.; Bianchini, P.; Askar, A.; Giersz, M.; van de Ven, G.

2017-06-01

The detection of intermediate-mass black holes (IMBHs) in Galactic globular clusters (GCs) has so far been controversial. In order to characterize the effectiveness of integrated-light spectroscopy through integral field units, we analyse realistic mock data generated from state-of-the-art Monte Carlo simulations of GCs with a central IMBH, considering different setups and conditions varying IMBH mass, cluster distance and accuracy in determination of the centre. The mock observations are modelled with isotropic Jeans models to assess the success rate in identifying the IMBH presence, which we find to be primarily dependent on IMBH mass. However, even for an IMBH of considerable mass (3 per cent of the total GC mass), the analysis does not yield conclusive results in one out of five cases, because of shot noise due to bright stars close to the IMBH line of sight. This stochastic variability in the modelling outcome grows with decreasing BH mass, with approximately three failures out of four for IMBHs with 0.1 per cent of total GC mass. Finally, we find that our analysis is generally unable to exclude at 68 per cent confidence an IMBH with mass of 103 M⊙ in snapshots without a central BH. Interestingly, our results are not sensitive to GC distance within 5-20 kpc, nor to misidentification of the GC centre by less than 2 arcsec (<20 per cent of the core radius). These findings highlight the value of ground-based integral field spectroscopy for large GC surveys, where systematic failures can be accounted for, but stress the importance of discrete kinematic measurements that are less affected by stochasticity induced by bright stars.

A Modified Gibson Assembly Method for Cloning Large DNA Fragments with High GC Contents.

PubMed

Li, Lei; Jiang, Weihong; Lu, Yinhua

2018-01-01

Gibson one-step, isothermal assembly method (Gibson assembly) can be used to efficiently assemble large DNA molecules by in vitro recombination involving a 5'-exonuclease, a DNA polymerase and a DNA ligase. In the past few years, this robust DNA assembly method has been widely applied to seamlessly construct genes, genetic pathways and even entire genomes. Here, we expand this method to clone large DNA fragments with high GC contents, such as antibiotic biosynthetic gene clusters from Streptomyces . Due to the low isothermal condition (50 °C) in the Gibson reaction system, the complementary overlaps with high GC contents are proposed to easily form mismatched linker pairings, which leads to low assembly efficiencies mainly due to vector self-ligation. So, we modified this classic method by the following two steps. First, a pair of universal terminal single-stranded DNA overhangs with high AT contents are added to the ends of the BAC vector. Second, two restriction enzyme sites are introduced into the respective sides of the designed overlaps to achieve the hierarchical assembly of large DNA molecules. The optimized Gibson assembly method facilitates fast acquisition of large DNA fragments with high GC contents from Streptomyces.

MOCCA-SURVEY Database. I. Eccentric Black Hole Mergers during Binary–Single Interactions in Globular Clusters

NASA Astrophysics Data System (ADS)

Samsing, Johan; Askar, Abbas; Giersz, Mirek

2018-03-01

We estimate the population of eccentric gravitational wave (GW) binary black hole (BBH) mergers forming during binary–single interactions in globular clusters (GCs), using ∼800 GC models that were evolved using the MOCCA code for star cluster simulations as part of the MOCCA-Survey Database I project. By re-simulating BH binary–single interactions extracted from this set of GC models using an N-body code that includes GW emission at the 2.5 post-Newtonian level, we find that ∼10% of all the BBHs assembled in our GC models that merge at present time form during chaotic binary–single interactions, and that about half of this sample have an eccentricity >0.1 at 10 Hz. We explicitly show that this derived rate of eccentric mergers is ∼100 times higher than one would find with a purely Newtonian N-body code. Furthermore, we demonstrate that the eccentric fraction can be accurately estimated using a simple analytical formalism when the interacting BHs are of similar mass, a result that serves as the first successful analytical description of eccentric GW mergers forming during three-body interactions in realistic GCs.

Concurrent formation of supermassive stars and globular clusters: implications for early self-enrichment

NASA Astrophysics Data System (ADS)

Gieles, Mark; Charbonnel, Corinne; Krause, Martin G. H.; Hénault-Brunet, Vincent; Agertz, Oscar; Lamers, Henny J. G. L. M.; Bastian, Nathan; Gualandris, Alessia; Zocchi, Alice; Petts, James A.

2018-04-01

We present a model for the concurrent formation of globular clusters (GCs) and supermassive stars (SMSs, ≳ 103 M⊙) to address the origin of the HeCNONaMgAl abundance anomalies in GCs. GCs form in converging gas flows and accumulate low-angular momentum gas, which accretes onto protostars. This leads to an adiabatic contraction of the cluster and an increase of the stellar collision rate. A SMS can form via runaway collisions if the cluster reaches sufficiently high density before two-body relaxation halts the contraction. This condition is met if the number of stars ≳ 106 and the gas accretion rate ≳ 105 M⊙/Myr, reminiscent of GC formation in high gas-density environments, such as - but not restricted to - the early Universe. The strong SMS wind mixes with the inflowing pristine gas, such that the protostars accrete diluted hot-hydrogen burning yields of the SMS. Because of continuous rejuvenation, the amount of processed material liberated by the SMS can be an order of magnitude higher than its maximum mass. This `conveyor-belt' production of hot-hydrogen burning products provides a solution to the mass budget problem that plagues other scenarios. Additionally, the liberated material is mildly enriched in helium and relatively rich in other hot-hydrogen burning products, in agreement with abundances of GCs today. Finally, we find a super-linear scaling between the amount of processed material and cluster mass, providing an explanation for the observed increase of the fraction of processed material with GC mass. We discuss open questions of this new GC enrichment scenario and propose observational tests.

Young globular clusters in NGC 1316

NASA Astrophysics Data System (ADS)

Sesto, Leandro A.; Faifer, Favio R.; Smith Castelli, Analía V.; Forte, Juan C.; Escudero, Carlos G.

2018-05-01

We present multi-object spectroscopy of the inner zone of the globular cluster (GC) system associated with the intermediate-age merger remnant NGC 1316. Using the multi-object mode of the GMOS camera, we obtained spectra for 35 GCs. We find pieces of evidence that the innermost GCs of NGC 1316 rotate almost perpendicular to the stellar component of the galaxy. In a second stage, we determined ages, metallicities and α-element abundances for each GC present in the sample, through the measurement of different Lick/IDS indices and their comparison with simple stellar population models. We confirmed the existence of multiple GC populations associated with NGC 1316, where the presence of a dominant subpopulation of very young GCs, with an average age of 2.1 Gyr, metallicities between -0.5 < [Z/H] < 0.5 dex and α-element abundances in the range -0.2 < [α/Fe] < 0.3 dex, stands out. Several objects in our sample present subsolar values of [α/Fe] and a large spread of [Z/H] and ages. Some of these objects could actually be stripped nuclei, possibly accreted during minor merger events. Finally, the results have been analyzed with the aim of describing the different episodes of star formation and thus provide a more complete picture about the evolutionary history of the galaxy. We conclude that these pieces of evidence could indicate that this galaxy has cannibalized one or more gas-rich galaxies, where the last fusion event occurred about 2 Gyr ago.

VEGAS-SSS. A VST early-type galaxy survey: analysis of small stellar systems. Testing the methodology on the globular cluster system in NGC 3115

NASA Astrophysics Data System (ADS)

Cantiello, Michele; Capaccioli, Massimo; Napolitano, Nicola; Grado, Aniello; Limatola, Luca; Paolillo, Maurizio; Iodice, Enrica; Romanowsky, Aaron J.; Forbes, Duncan A.; Raimondo, Gabriella; Spavone, Marilena; La Barbera, Francesco; Puzia, Thomas H.; Schipani, Pietro

2015-03-01

We present a study of globular clusters (GCs) and other small stellar systems (SSSs) in the field of NGC 3115, observed as part of the ongoing wide-field imaging survey VEGAS, carried out with the 2.6 m VST telescope. We used deep g and i observations of NGC 3115, a well-studied lenticular galaxy that is covered excellently well in the scientific literature. This is fundamental to test the methodologies, verify the results, and probe the capabilities of the VEGAS-SSS. Leveraging the large field of view of the VST allowed us to accurately study the distribution and properties of SSSs as a function of galactocentric distance, well beyond ~20 galaxy effective radii, in a way that is rarely possible. Our analysis of colors, magnitudes, and sizes of SSS candidates confirms the results from existing studies, some of which were carried out with 8-10 m class telescopes, and further extends them to previously unreached galactocentric distances with similar accuracy. In particular, we find a color bimodality for the GC population and a de Vaucouleurs r1/4 profile for the surface density of GCs similar to the galaxy light profile. The radial color gradient of blue and red GCs previously found, for instance, by the SLUGGS survey with Subaru and Keck data, is further extended out to the largest galactocentric radii inspected, ~65 kpc. In addition, the surface density profiles of blue and red GCs taken separately are well approximated by a r1/4 density profile, with the fraction of blue GCs being slightly larger at larger radii. We do not find hints of a trend for the red GC subpopulation and for the GC turnover magnitude to vary with radius, but we observe a ~0.2 mag difference in the turnover magnitude of the blue and red GC subpopulations. Finally, from inspecting SSS sizes and colors, we obtain a list of ultracompact dwarf galaxies and GC candidates suitable for future spectroscopic follow-up. In conclusion, our study shows i) the reliability of the methodologies developed to study SSSs in the field of bright early-type galaxies; and ii) the great potential of the VEGAS survey to produce original results on SSSs science, mainly thanks to the wide-field imaging adopted. Full Table 3 is only available at the CDS via anonymous ftp to http://cdsarc.u-strasbg.fr (ftp://130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/576/A14

VizieR Online Data Catalog: Sombrero galaxy globular clusters (Alves-Brito+, 2011)

NASA Astrophysics Data System (ADS)

Alves-Brito, A.; Hau, G. K. T.; Forbes, D. A.; Spitler, L. R.; Strader, J.; Brodie, J. P.; Rhode, K. L.

2018-01-01

GC candidates were selected from two published photometric studies. In the inner regions we used the BVR Hubble Space Telescope (HST)/Advanced Camera for Surveys (ACS) mosaic of Spitler et al. (2006, Cat. J/AJ/132/1593), which covers approximately the central 10x7-arcmin2 of the galaxy with minimal contamination. Beyond this area, we used the ground-based BVR catalogue of Rhode & Zepf (2004AJ....127..302R). This latter catalogue has higher contamination but extends to the apparent edge of the GC system at a projected radius of 19 arcmin and so is necessary to complement the wide field of view (16x5arcmin2) of the DEIMOS spectrograph. The central dust lane of NGC 4594 was excluded from our target selection. (2 data files).

Multiple Populations in Globular Clusters - The Spectroscopic View

NASA Astrophysics Data System (ADS)

Cohen, Judith G.

2015-03-01

I review the evidence supporting and characterizing multiple populations within globular clusters (GCs) based on spectroscopy, i.e. on abundance variations within the stellar population of an individual GC, which dates back to almost 40 years ago. I discuss some of my recent work in this area.

Output ordering and prioritisation system (OOPS): ranking biosynthetic gene clusters to enhance bioactive metabolite discovery.

PubMed

Peña, Alejandro; Del Carratore, Francesco; Cummings, Matthew; Takano, Eriko; Breitling, Rainer

2017-12-18

The rapid increase of publicly available microbial genome sequences has highlighted the presence of hundreds of thousands of biosynthetic gene clusters (BGCs) encoding valuable secondary metabolites. The experimental characterization of new BGCs is extremely laborious and struggles to keep pace with the in silico identification of potential BGCs. Therefore, the prioritisation of promising candidates among computationally predicted BGCs represents a pressing need. Here, we propose an output ordering and prioritisation system (OOPS) which helps sorting identified BGCs by a wide variety of custom-weighted biological and biochemical criteria in a flexible and user-friendly interface. OOPS facilitates a judicious prioritisation of BGCs using G+C content, coding sequence length, gene number, cluster self-similarity and codon bias parameters, as well as enabling the user to rank BGCs based upon BGC type, novelty, and taxonomic distribution. Effective prioritisation of BGCs will help to reduce experimental attrition rates and improve the breadth of bioactive metabolites characterized.

The XXL survey XV: evidence for dry merger driven BCG growth in XXL-100-GC X-ray clusters

NASA Astrophysics Data System (ADS)

Lavoie, S.; Willis, J. P.; Démoclès, J.; Eckert, D.; Gastaldello, F.; Smith, G. P.; Lidman, C.; Adami, C.; Pacaud, F.; Pierre, M.; Clerc, N.; Giles, P.; Lieu, M.; Chiappetti, L.; Altieri, B.; Ardila, F.; Baldry, I.; Bongiorno, A.; Desai, S.; Elyiv, A.; Faccioli, L.; Gardner, B.; Garilli, B.; Groote, M. W.; Guennou, L.; Guzzo, L.; Hopkins, A. M.; Liske, J.; McGee, S.; Melnyk, O.; Owers, M. S.; Poggianti, B.; Ponman, T. J.; Scodeggio, M.; Spitler, L.; Tuffs, R. J.

2016-11-01

The growth of brightest cluster galaxies (BCGs) is closely related to the properties of their host cluster. We present evidence for dry mergers as the dominant source of BCG mass growth at z ≲ 1 in the XXL 100 brightest cluster sample. We use the global red sequence, Hα emission and mean star formation history to show that BCGs in the sample possess star formation levels comparable to field ellipticals of similar stellar mass and redshift. XXL 100 brightest clusters are less massive on average than those in other X-ray selected samples such as LoCuSS or HIFLUGCS. Few clusters in the sample display high central gas concentration, rendering inefficient the growth of BCGs via star formation resulting from the accretion of cool gas. Using measures of the relaxation state of their host clusters, we show that BCGs grow as relaxation proceeds. We find that the BCG stellar mass corresponds to a relatively constant fraction 1 per cent of the total cluster mass in relaxed systems. We also show that, following a cluster scale merger event, the BCG stellar mass lags behind the expected value from the Mcluster-MBCG relation but subsequently accretes stellar mass via dry mergers as the BCG and cluster evolve towards a relaxed state.

VizieR Online Data Catalog: Globular cluster candidates in NGC253 (Cantiello+, 2018)

NASA Astrophysics Data System (ADS)

Cantiello, M.; Grado, A.; Rejkuba, M.; Arnaboldi, M.; Capaccioli, M.; Greggio, L.; Iodice, E.; Limatola, L.

2017-11-01

Photometric catalogs for globular cluster (GC) candidates over the 1 sq. degree area around NGC253. The catalogues are based on ugri-band photometry from the VST data, and JKs photometry from VISTA. Aperture magnitudes, corrected for aperture correction are reported. (1 data file).

Hubble Space Telescope Snapshot Search for Planetary Nebulae in Globular Clusters of the Local Group

NASA Astrophysics Data System (ADS)

Bond, Howard E.

2015-04-01

Single stars in ancient globular clusters (GCs) are believed incapable of producing planetary nebulae (PNs), because their post-asymptotic-giant-branch evolutionary timescales are slower than the dissipation timescales for PNs. Nevertheless, four PNs are known in Galactic GCs. Their existence likely requires more exotic evolutionary channels, including stellar mergers and common-envelope binary interactions. I carried out a snapshot imaging search with the Hubble Space Telescope (HST) for PNs in bright Local Group GCs outside the Milky Way. I used a filter covering the 5007 Å nebular emission line of [O iii], and another one in the nearby continuum, to image 66 GCs. Inclusion of archival HST frames brought the total number of extragalactic GCs imaged at 5007 Å to 75, whose total luminosity slightly exceeds that of the entire Galactic GC system. I found no convincing PNs in these clusters, aside from one PN in a young M31 cluster misclassified as a GC, and two PNs at such large angular separations from an M31 GC that membership is doubtful. In a ground-based spectroscopic survey of 274 old GCs in M31, Jacoby et al. found three candidate PNs. My HST images of one of them suggest that the [O iii] emission actually arises from ambient interstellar medium rather than a PN; for the other two candidates, there are broadband archival UV HST images that show bright, blue point sources that are probably the PNs. In a literature search, I also identified five further PN candidates lying near old GCs in M31, for which follow-up observations are necessary to confirm their membership. The rates of incidence of PNs are similar, and small but nonzero, throughout the GCs of the Local Group. Based on observations with the NASA/ESA Hubble Space Telescope obtained at the Space Telescope Science Institute, and from the data archive at STScI, which are operated by the Association of Universities for Research in Astronomy, Inc., under NASA contract NAS5-26555.

A systems biology approach to detect key pathways and interaction networks in gastric cancer on the basis of microarray analysis.

PubMed

Guo, Leilei; Song, Chunhua; Wang, Peng; Dai, Liping; Zhang, Jianying; Wang, Kaijuan

2015-11-01

The aim of the present study was to explore key molecular pathways contributing to gastric cancer (GC) and to construct an interaction network between significant pathways and potential biomarkers. Publicly available gene expression profiles of GSE29272 for GC, and data for the corresponding normal tissue, were downloaded from Gene Expression Omnibus. Pre‑processing and differential analysis were performed with R statistical software packages, and a number of differentially expressed genes (DEGs) were obtained. A functional enrichment analysis was performed for all the DEGs with a BiNGO plug‑in in Cytoscape. Their correlation was analyzed in order to construct a network. The modularity analysis and pathway identification operations were used to identify graph clusters and associated pathways. The underlying molecular mechanisms involving these DEGs were also assessed by data mining. A total of 249 DEGs, which were markedly upregulated and downregulated, were identified. The extracellular region contained the most significantly over‑represented functional terms, with respect to upregulated and downregulated genes, and the closest topological matches were identified for taste transduction and regulation of autophagy. In addition, extracellular matrix‑receptor interactions were identified as the most relevant pathway associated with the progression of GC. The genes for fibronectin 1, secreted phosphoprotein 1, collagen type 4 variant α‑1/2 and thrombospondin 1, which are involved in the pathways, may be considered as potential therapeutic targets for GC. A series of associations between candidate genes and key pathways were also identified for GC, and their correlation may provide novel insights into the pathogenesis of GC.

The origin of discrete multiple stellar populations in globular clusters

NASA Astrophysics Data System (ADS)

Bekki, K.; Jeřábková, T.; Kroupa, P.

2017-10-01

Recent observations have revealed that at least several old globular clusters (GCs) in the Galaxy have discrete distributions of stars along the Mg-Al anticorrelation. In order to discuss this recent observation, we construct a new one-zone GC formation model in which the maximum stellar mass (mmax) in the initial mass function of stars in a forming GC depends on the star formation rate, as deduced from independent observations. We investigate the star formation histories of forming GCs. The principal results are as follows. About 30 Myr after the formation of the first generation (1G) of stars within a particular GC, new stars can be formed from ejecta from asymptotic giant branch (AGB) stars of 1G. However, the formation of this second generation (2G) of stars can last only for [10-20] Myr because the most massive SNe of 2G expel all of the remaining gas. The third generation (3G) of stars are then formed from AGB ejecta ≈30 Myr after the truncation of 2G star formation. This cycle of star formation followed by its truncation by SNe can continue until all AGB ejecta is removed from the GC by some physical process. Thus, it is inevitable that GCs have discrete multiple stellar populations in the [Mg/Fe]-[Al/Fe] diagram. Our model predicts that low-mass GCs are unlikely to have discrete multiple stellar populations, and young massive clusters may not have massive OB stars owing to low mmax (<[20-30] M⊙) during the secondary star formation.

Cancer Transcriptome Dataset Analysis: Comparing Methods of Pathway and Gene Regulatory Network-Based Cluster Identification.

PubMed

Nam, Seungyoon

2017-04-01

Cancer transcriptome analysis is one of the leading areas of Big Data science, biomarker, and pharmaceutical discovery, not to forget personalized medicine. Yet, cancer transcriptomics and postgenomic medicine require innovation in bioinformatics as well as comparison of the performance of available algorithms. In this data analytics context, the value of network generation and algorithms has been widely underscored for addressing the salient questions in cancer pathogenesis. Analysis of cancer trancriptome often results in complicated networks where identification of network modularity remains critical, for example, in delineating the "druggable" molecular targets. Network clustering is useful, but depends on the network topology in and of itself. Notably, the performance of different network-generating tools for network cluster (NC) identification has been little investigated to date. Hence, using gastric cancer (GC) transcriptomic datasets, we compared two algorithms for generating pathway versus gene regulatory network-based NCs, showing that the pathway-based approach better agrees with a reference set of cancer-functional contexts. Finally, by applying pathway-based NC identification to GC transcriptome datasets, we describe cancer NCs that associate with candidate therapeutic targets and biomarkers in GC. These observations collectively inform future research on cancer transcriptomics, drug discovery, and rational development of new analysis tools for optimal harnessing of omics data.

A critical assessment of models for the origin of multiple populations in globular clusters

NASA Astrophysics Data System (ADS)

Bastian, Nate

2017-03-01

A number of scenarios have been put forward to explain the origin of the chemical anomalies (and resulting complex colour-magnitude diagrams) observed in globular clusters (GCs), namely the AGB, Fast Rotating Massive Star, Very Massive Star, and Early Disc Accretion scenarios. We compare the predictions of these scenarios with a range of observations (including young massive clusters (YMCs), chemical patterns, and GC population properties) and find that all models are inconsistent with observations. In particular, YMCs do not show evidence for multiple epochs of star-formation and appear to be gas free by an age of ~ 3 Myr. Also, the chemical patterns displayed in GCs vary from one to the next in such a way that cannot be reproduced by standard nucleosynthetic yields. Finally, we show that the ``mass budget problem'' for the scenarios cannot be solved by invoking heavy cluster mass loss (i.e. that clusters were 10-100 times more massive at birth) as this solution makes basic predictions about the GC population that are inconsistent with observations. We conclude that none of the proposed scenarios can explain the multiple population phenomenon, hence alternative theories are needed.

A Subaru/Suprime-Cam wide-field survey of globular cluster populations around M87 - I. Observation, data analysis and luminosity function

NASA Astrophysics Data System (ADS)

Tamura, Naoyuki; Sharples, Ray M.; Arimoto, Nobuo; Onodera, Masato; Ohta, Kouji; Yamada, Yoshihiko

2006-12-01

In this paper and a companion paper, we report on a wide-field imaging survey of the globular cluster (GC) populations around M87 carried out with Suprime-Cam on the 8.2-m Subaru telescope. Here, we describe the observations, data reduction and data analysis, and present luminosity functions of GC populations around M87 and NGC 4552, another luminous Virgo elliptical in our survey field. The imaging data were taken in the B, V and I bands with a sky coverage of extending from the M87 centre out to ~0.5 Mpc. GC candidates were selected by applying a colour criterion on the B - V and V - I diagram to unresolved objects, which greatly reduces contamination. The data from control fields taken with Subaru/Suprime-Cam were also analysed for subtraction of contamination in the GC sample. These control field data are compatible with those in the M87 field in terms of the filter set (BVI), limiting magnitudes and image quality, which minimize the possibility of introducing any systematic errors into the subtractive correction. We investigate GC luminosity functions (GCLFs) at distances <= 10 arcmin (<~45 kpc) from the host galaxy centre in detail. By fitting Gaussians to the GCLFs, the V-band turnover magnitude (VTO) is estimated to be 23.62 +/- 0.06 and 23.56 +/- 0.20 mag for the GC population in M87 and NGC 4552, respectively. The GCLF is found to be a function of GC colour; VTO of the red GC subpopulation (V - I > 1.1) is fainter than that of the blue GC subpopulation (V - I <= 1.1) in both M87 and NGC 4552, as expected if the colour differences are primarily due to a metallicity effect, and the mass functions of the two subpopulations are similar. The radial dependence of the GCLF is also investigated for the GC population in M87. The GCLF of each subpopulation at 1 <= R <= 5 arcmin is compared to that at 5 <= R <= 10arcmin, but no significant trend with distance is found in the shape of the GCLF. We also estimate GC-specific frequencies (SN) for M87 and NGC 4552. The SN of the M87 GC population is estimated to be 12.5 +/- 0.8 within 25 arcmin. The SN value of the NGC 4552 GC population is estimated to be 5.0 +/- 0.6 within 10 arcmin.

NGC 6362: THE LEAST MASSIVE GLOBULAR CLUSTER WITH CHEMICALLY DISTINCT MULTIPLE POPULATIONS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mucciarelli, Alessio; Dalessandro, Emanuele; Ferraro, Francesco R.

2016-06-20

We present the first measure of Fe and Na abundances in NGC 6362, a low-mass globular cluster (GC) where first- and second-generation stars are fully spatially mixed. A total of 160 member stars (along the red giant branch (RGB) and the red horizontal branch (RHB)) were observed with the multi-object spectrograph FLAMES at the Very Large Telescope. We find that the cluster has an iron abundance of [Fe/H] = −1.09 ± 0.01 dex, without evidence of intrinsic dispersion. On the other hand, the [Na/Fe] distribution turns out to be intrinsically broad and bimodal. The Na-poor and Na-rich stars populate, respectively,more » the bluest and the reddest RGBs detected in the color–magnitude diagrams including the U filter. The RGB is composed of a mixture of first- and second-generation stars in a similar proportion, while almost all the RHB stars belong to the first cluster generation. To date, NGC 6362 is the least massive GC where both the photometric and spectroscopic signatures of multiple populations have been detected.« less

EIGHT HUNDRED NEW CANDIDATES FOR GLOBULAR CLUSTERS IN NGC 5128 (Centaurus A)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Harris, Gretchen L. H.; Johnston, Kyle; Kazemzadeh, Farnoud

2012-04-15

We have used new wide-field imaging with the Magellan IMACS camera to search for globular cluster (GC) candidates around NGC 5128, the nearest giant E galaxy. The imaging data are in the B and R broadband filters and cover a 1.55 deg{sup 2} field centered on the galaxy, corresponding to an area about 90 Multiplication-Sign 90 kpc{sup 2} at the distance of NGC 5128. All the fields were taken under exceptionally high-quality seeing conditions (FWHM = 0.''4-0.''5 in R). Using this material we are able, for the first time in the literature, to construct a homogeneous list of GC candidatesmore » covering a wide span of the NGC 5128 halo and unusually free of field contaminants (foreground stars and faint background galaxies). Selecting the measured objects by color, magnitude, ellipticity, and profile size gives us a final catalog of 833 new high-quality GC candidates brighter than R = 21 (0.8 mag fainter than the standard GC luminosity function turnover point). The measured positions have better than 0.''2 precision in both coordinates. This list can be used as the basis for spectroscopic follow-up, leading to a more comprehensive kinematic and dynamic study of the halo.« less

Web Server for Peak Detection, Baseline Correction, and Alignment in Two-Dimensional Gas Chromatography Mass Spectrometry-Based Metabolomics Data.

PubMed

Tian, Tze-Feng; Wang, San-Yuan; Kuo, Tien-Chueh; Tan, Cheng-En; Chen, Guan-Yuan; Kuo, Ching-Hua; Chen, Chi-Hsin Sally; Chan, Chang-Chuan; Lin, Olivia A; Tseng, Y Jane

2016-11-01

Two-dimensional gas chromatography time-of-flight mass spectrometry (GC×GC/TOF-MS) is superior for chromatographic separation and provides great sensitivity for complex biological fluid analysis in metabolomics. However, GC×GC/TOF-MS data processing is currently limited to vendor software and typically requires several preprocessing steps. In this work, we implement a web-based platform, which we call GC 2 MS, to facilitate the application of recent advances in GC×GC/TOF-MS, especially for metabolomics studies. The core processing workflow of GC 2 MS consists of blob/peak detection, baseline correction, and blob alignment. GC 2 MS treats GC×GC/TOF-MS data as pictures and clusters the pixels as blobs according to the brightness of each pixel to generate a blob table. GC 2 MS then aligns the blobs of two GC×GC/TOF-MS data sets according to their distance and similarity. The blob distance and similarity are the Euclidean distance of the first and second retention times of two blobs and the Pearson's correlation coefficient of the two mass spectra, respectively. GC 2 MS also directly corrects the raw data baseline. The analytical performance of GC 2 MS was evaluated using GC×GC/TOF-MS data sets of Angelica sinensis compounds acquired under different experimental conditions and of human plasma samples. The results show that GC 2 MS is an easy-to-use tool for detecting peaks and correcting baselines, and GC 2 MS is able to align GC×GC/TOF-MS data sets acquired under different experimental conditions. GC 2 MS is freely accessible at http://gc2ms.web.cmdm.tw .

STAR CLUSTERS IN M31. II. OLD CLUSTER METALLICITIES AND AGES FROM HECTOSPEC DATA

DOE Office of Scientific and Technical Information (OSTI.GOV)

Caldwell, Nelson; Schiavon, Ricardo; Morrison, Heather

2011-02-15

We present new high signal-to-noise spectroscopic data on the M31 globular cluster (GC) system, obtained with the Hectospec multifiber spectrograph on the 6.5 m MMT. More than 300 clusters have been observed at a resolution of 5 A and with a median S/N of 75 per A, providing velocities with a median uncertainty of 6 km s{sup -1}. The primary focus of this paper is the determination of mean cluster metallicities, ages, and reddenings. Metallicities were estimated using a calibration of Lick indices with [Fe/H] provided by Galactic GCs. These match well the metallicities of 24 M31 clusters determined frommore » Hubble Space Telescope color-magnitude diagrams, the differences having an rms of 0.2 dex. The metallicity distribution is not generally bimodal, in strong distinction with the bimodal Galactic globular distribution. Rather, the M31 distribution shows a broad peak, centered at [Fe/H] = -1, possibly with minor peaks at [Fe/H] = -1.4, -0.7, and -0.2, suggesting that the cluster systems of M31 and the Milky Way had different formation histories. Ages for clusters with [Fe/H] > - 1 were determined using the automatic stellar population analysis program EZ{sub A}ges. We find no evidence for massive clusters in M31 with intermediate ages, those between 2 and 6 Gyr. Moreover, we find that the mean ages of the old GCs are remarkably constant over about a decade in metallicity (-0.95{approx}< [Fe/H] {approx}<0.0).« less

Draft Genome Sequence of Rhodobacteraceae Strain PD-2, an Algicidal Bacterium with a Quorum-Sensing System, Isolated from the Marine Microalga Prorocentrum donghaiense

PubMed Central

Cui, Zhisong; Xu, Luyan; Sun, Chengjun; Powell, Ryan J.; Hill, Russell T.

2015-01-01

Rhodobacteraceae strain PD-2 was isolated from the marine microalga Prorocentrum donghaiense. It has algicidal activity toward its host and could produce N-acylhomoserine lactone signals. Here, we present the draft genome of strain PD-2, which contains 5,227,214 bp with an average GC content of 66.19%. There were 4,864 encoding gene sequences and two clusters of luxI and luxR homologues identified. PMID:25700405

Dynamical evolution of stellar mass black holes in dense stellar clusters: estimate for merger rate of binary black holes originating from globular clusters

NASA Astrophysics Data System (ADS)

Tanikawa, A.

2013-10-01

We have performed N-body simulations of globular clusters (GCs) in order to estimate a detection rate of mergers of binary stellar mass black holes (BBHs) by means of gravitational wave (GW) observatories. For our estimate, we have only considered mergers of BBHs which escape from GCs (BBH escapers). BBH escapers merge more quickly than BBHs inside GCs because of their small semimajor axes. N-body simulation cannot deal with a GC with the number of stars N ˜ 106 due to its high calculation cost. We have simulated dynamical evolution of small N clusters (104 ≲ N ≲ 105), and have extrapolated our simulation results to large N clusters. From our simulation results, we have found the following dependence of BBH properties on N. BBHs escape from a cluster at each two-body relaxation time at a rate proportional to N. Semimajor axes of BBH escapers are inversely proportional to N, if initial mass densities of clusters are fixed. Eccentricities, primary masses and mass ratios of BBH escapers are independent of N. Using this dependence of BBH properties, we have artificially generated a population of BBH escapers from a GC with N ˜ 106, and have estimated a detection rate of mergers of BBH escapers by next-generation GW observatories. We have assumed that all the GCs are formed 10 or 12 Gyr ago with their initial numbers of stars Ni = 5 × 105-2 × 106 and their initial stellar mass densities inside their half-mass radii ρh,i = 6 × 103-106 M⊙ pc-3. Then, the detection rate of BBH escapers is 0.5-20 yr-1 for a BH retention fraction RBH = 0.5. A few BBH escapers are components of hierarchical triple systems, although we do not consider secular perturbation on such BBH escapers for our estimate. Our simulations have shown that BHs are still inside some of GCs at the present day. These BHs may marginally contribute to BBH detection.

Comparison of Intra-cluster and M87 Halo Orphan Globular Clusters in the Virgo Cluster

NASA Astrophysics Data System (ADS)

Louie, Tiffany Kaye; Tuan, Jin Zong; Martellini, Adhara; Guhathakurta, Puragra; Toloba, Elisa; Peng, Eric; Longobardi, Alessia; Lim, Sungsoon

2018-01-01

We present a study of “orphan” globular clusters (GCs) — GCs with no identifiable nearby host galaxy — discovered in NGVS, a 104 deg2 CFHT/MegaCam imaging survey. At the distance of the Virgo cluster, GCs are bright enough to make good spectroscopic targets and many are barely resolved in good ground-based seeing. Our orphan GC sample is derived from a subset of NGVS-selected GC candidates that were followed up with Keck/DEIMOS spectroscopy. While our primary spectroscopic targets were candidate GC satellites of Virgo dwarf elliptical and ultra-diffuse galaxies, many objects turned out to be non-satellites based on a radial velocity mismatch with the Virgo galaxy they are projected close to. Using a combination of spectral characteristics (e.g., absorption vs. emission), Gaussian mixture modeling of radial velocity and positions, and extreme deconvolution analysis of ugrizk photometry and image morphology, these non-satellites were classified into: (1) intra-cluster GCs (ICGCs) in the Virgo cluster, (2) GCs in the outer halo of M87, (3) foreground Milky Way stars, and (4) background galaxies. The statistical distinction between ICGCs and M87 halo GCs is based on velocity distributions (mean of 1100 vs. 1300 km/s and dispersions of 700 vs. 400 km/s, respectively) and radial distribution (diffuse vs. centrally concentrated, respectively). We used coaddition to increase the spectral SNR for the two classes of orphan GCs and measured the equivalent widths (EWs) of the Mg b and H-beta absorption lines. These EWs were compared to single stellar population models to obtain mean age and metallicity estimates. The ICGCs and M87 halo GCs have <[Fe/H> = –0.6+/–0.3 and –0.4+/–0.3 dex, respectively, and mean ages of >~ 5 and >~ 10 Gyr, respectively. This suggests the M87 halo GCs formed in relatively high-mass galaxies that avoided being tidally disrupted by M87 until they were close to the cluster center, while IGCCs formed in relatively low-mass galaxies that were tidally disrupted in the cluster outskirts. Most of this work was carried out by high school students working under the auspices of the Science Internship Program (SIP) at UC Santa Cruz. We are grateful for financial support from the NSF and NASA/STScI.

Bacteriophages carrying antibiotic resistance genes in fecal waste from cattle, pigs, and poultry.

PubMed

Colomer-Lluch, Marta; Imamovic, Lejla; Jofre, Juan; Muniesa, Maite

2011-10-01

This study evaluates the occurrence of bacteriophages carrying antibiotic resistance genes in animal environments. bla(TEM), bla(CTX-M) (clusters 1 and 9), and mecA were quantified by quantitative PCR in 71 phage DNA samples from pigs, poultry, and cattle fecal wastes. Densities of 3 to 4 log(10) gene copies (GC) of bla(TEM), 2 to 3 log(10) GC of bla(CTX-M), and 1 to 3 log(10) GC of mecA per milliliter or gram of sample were detected, suggesting that bacteriophages can be environmental vectors for the horizontal transfer of antibiotic resistance genes.

Supernova kicks and dynamics of compact remnants in the Galactic Centre

NASA Astrophysics Data System (ADS)

Bortolas, Elisa; Mapelli, Michela; Spera, Mario

2017-08-01

The Galactic Centre (GC) is a unique place to study the extreme dynamical processes occurring near a supermassive black hole (SMBH). Here, we investigate the role of supernova (SN) explosions occurring in massive binary systems lying in a disc-like structure within the innermost parsec. We use a regularized algorithm to simulate 3 × 104 isolated three-body systems composed of a stellar binary orbiting the SMBH. We start the integration when the primary member undergoes an SN explosion and analyse the impact of SN kicks on the orbits of stars and compact remnants. We find that SN explosions scatter the lighter stars in the pair on completely different orbits, with higher eccentricity and inclination. In contrast, stellar-mass black holes (BHs) and massive stars retain memory of the orbit of their progenitor star. Our results suggest that SN kicks are not sufficient to eject BHs from the GC. We thus predict that all BHs that form in situ in the central parsec of our Galaxy remain in the GC, building up a cluster of dark remnants. In addition, the change of neutron star (NS) orbits induced by SNe may partially account for the observed dearth of NSs in the GC. About 40 per cent of remnants stay bound to the stellar companion after the kick; we expect up to 70 per cent of them might become X-ray binaries through Roche lobe filling. Finally, the eccentricity of some light stars becomes >0.7 as an effect of the SN kick, producing orbits similar to those of the G1 and G2 dusty objects.

Dysbiosis of the microbiome in gastric carcinogenesis.

PubMed

Castaño-Rodríguez, Natalia; Goh, Khean-Lee; Fock, Kwong Ming; Mitchell, Hazel M; Kaakoush, Nadeem O

2017-11-21

The gastric microbiome has been proposed as an etiological factor in gastric carcinogenesis. We compared the gastric microbiota in subjects presenting with gastric cancer (GC, n = 12) and controls (functional dyspepsia (FD), n = 20) from a high GC risk population in Singapore and Malaysia. cDNA from 16S rRNA transcripts were amplified (515F-806R) and sequenced using Illumina MiSeq 2 × 250 bp chemistry. Increased richness and phylogenetic diversity but not Shannon's diversity was found in GC as compared to controls. nMDS clustered GC and FD subjects separately, with PERMANOVA confirming a significant difference between the groups. H. pylori serological status had a significant impact on gastric microbiome α-diversity and composition. Several bacterial taxa were enriched in GC, including Lactococcus, Veilonella, and Fusobacteriaceae (Fusobacterium and Leptotrichia). Prediction of bacterial metabolic contribution indicated that serological status had a significant impact on metabolic function, while carbohydrate digestion and pathways were enriched in GC. Our findings highlight three mechanisms of interest in GC, including enrichment of pro-inflammatory oral bacterial species, increased abundance of lactic acid producing bacteria, and enrichment of short chain fatty acid production pathways.

Structural basis for genome wide recognition of 5-bp GC motifs by SMAD transcription factors.

PubMed

Martin-Malpartida, Pau; Batet, Marta; Kaczmarska, Zuzanna; Freier, Regina; Gomes, Tiago; Aragón, Eric; Zou, Yilong; Wang, Qiong; Xi, Qiaoran; Ruiz, Lidia; Vea, Angela; Márquez, José A; Massagué, Joan; Macias, Maria J

2017-12-12

Smad transcription factors activated by TGF-β or by BMP receptors form trimeric complexes with Smad4 to target specific genes for cell fate regulation. The CAGAC motif has been considered as the main binding element for Smad2/3/4, whereas Smad1/5/8 have been thought to preferentially bind GC-rich elements. However, chromatin immunoprecipitation analysis in embryonic stem cells showed extensive binding of Smad2/3/4 to GC-rich cis-regulatory elements. Here, we present the structural basis for specific binding of Smad3 and Smad4 to GC-rich motifs in the goosecoid promoter, a nodal-regulated differentiation gene. The structures revealed a 5-bp consensus sequence GGC(GC)|(CG) as the binding site for both TGF-β and BMP-activated Smads and for Smad4. These 5GC motifs are highly represented as clusters in Smad-bound regions genome-wide. Our results provide a basis for understanding the functional adaptability of Smads in different cellular contexts, and their dependence on lineage-determining transcription factors to target specific genes in TGF-β and BMP pathways.

Genome Sequences of Three Cluster AU Arthrobacter Phages, Caterpillar, Nightmare, and Teacup

PubMed Central

Adair, Tamarah L.; Stowe, Emily; Pizzorno, Marie C.; Krukonis, Gregory; Harrison, Melinda; Garlena, Rebecca A.; Russell, Daniel A.; Jacobs-Sera, Deborah

2017-01-01

ABSTRACT Caterpillar, Nightmare, and Teacup are cluster AU siphoviral phages isolated from enriched soil on Arthrobacter sp. strain ATCC 21022. These genomes are 58 kbp long with an average G+C content of 50%. Sequence analysis predicts 86 to 92 protein-coding genes, including a large number of small proteins with predicted transmembrane domains. PMID:29122860

An optical/NIR survey of globular clusters in early-type galaxies. III. On the colour bimodality of globular cluster systems

NASA Astrophysics Data System (ADS)

Chies-Santos, A. L.; Larsen, S. S.; Cantiello, M.; Strader, J.; Kuntschner, H.; Wehner, E. M.; Brodie, J. P.

2012-03-01

Context. The interpretation that bimodal colour distributions of globular clusters (GCs) reflect bimodal metallicity distributions has been challenged. Non-linearities in the colour to metallicity conversions caused for example by the horizontal branch (HB) stars may be responsible for transforming a unimodal metallicity distribution into a bimodal (optical) colour distribution. Aims: We study optical/near-infrared (NIR) colour distributions of the GC systems in 14 E/S0 galaxies. Methods: We test whether the bimodal feature, generally present in optical colour distributions, remains in the optical/NIR ones. The latter colour combination is a better metallicity proxy than the former. We use KMM and GMM tests to quantify the probability that different colour distributions are better described by a bimodal, as opposed to a unimodal distribution. Results: We find that double-peaked colour distributions are more commonly seen in optical than in optical/NIR colours. For some of the galaxies where the optical (g - z) distribution is clearly bimodal, a bimodal distribution is not preferred over a unimodal one at a statistically significant level for the (g - K) and (z - K) distributions. The two most cluster-rich galaxies in our sample, NGC 4486 and NGC 4649, show some interesting differences. The (g - K) distribution of NGC 4649 is better described by a bimodal distribution, while this is true for the (g - K) distribution of NGC 4486 GCs only if restricted to a brighter sub-sample with small K-band errors (<0.05 mag). Formally, the K-band photometric errors cannot be responsible for blurring bimodal metallicity distributions to unimodal (g - K) colour distributions. However, simulations including the extra scatter in the colour-colour diagrams (not fully accounted for in the photometric errors) show that such scatter may contribute to the disappearance of bimodality in (g - K) for the full NGC 4486 sample. For the less cluster-rich galaxies results are inconclusive due to poorer statistics. Conclusions: A bimodal optical colour distribution is not necessarily an indication of an underlying bimodal metallicity distribution. Horizontal branch morphology may play an important role in shaping some of the optical GC colour distributions. However, we find tentative evidence that the (g - K) colour distributions remain bimodal in the two cluster-rich galaxies in our sample (NGC 4486 and NGC 4649) when restricted to clusters with small K-band photometric errors. This bimodality becomes less pronounced when including objects with larger errors, or for the (z - K) colour distributions. Deeper observations of large numbers of GCs will be required to reach more secure conclusions.

Classification of stellar populations in globular clusters

NASA Astrophysics Data System (ADS)

Wang, Yue; Zhao, Gang; Li, Hai-Ning

2017-04-01

Possessing multiple stellar populations has been accepted as a common feature of globular clusters (GCs). Different stellar populations manifest themselves with different chemical features, e.g. the well-known O-Na anti-correlation. Generally, the first (primordial) population has O and Na abundances consistent with those of field stars with similar metallicity; while the second (polluted) population is identified by their Na overabundance and O deficiency. The fraction of the populations is an important constraint on the GC formation scenario. Several methods have been proposed for the classification of GC populations. Here we examine a criterion derived based on the distribution of Galactic field stars, which relies on Na abundance as a function of [Fe/H], to distinguish first and second stellar populations in GCs. By comparing the first population fractions of 17 GCs estimated by the field star criterion with those in the literature derived by methods related to individual GCs, we find that the field star criterion tends to overestimate the first population fractions. The population separation methods, which are related to an individual GC sample, are recommended because the diversity of GCs can be taken into consideration. Currently, more caution should be exercised if one wants to regard field stars as a reference for the identification of a GC population. However, further study on the connection between field stars and GCs populations is still needed.

Intermediate-Mass Black Holes in Globular Cluster Systems

NASA Astrophysics Data System (ADS)

Wrobel, J. M.; Miller-Jones, J. C. A.; Nyland, K. E.; Maccarone, T. J.

2018-01-01

Theory suggests that globular clusters (GCs) of stars can host intermediate-mass black holes (IMBHs) with masses of about 100 to 100,000 solar masses. We invoke a semi-empirical model to predict the mass of an IMBH that, if undergoing accretion in the long-lived hard X-ray state, is consistent with the synchrotron radio luminosity of a GC. We apply this model to extant images from the Karl G. Jansky Very Large Array (VLA) and to simulated images from the Next Generation Very Large Array (ngVLA). Guided by our VLA results for M81's system of 206 probable GCs at a distance of 3.6 Mpc, we consider using the ngVLA to study the hundreds of globular cluster systems out to a distance of 25 Mpc. With its sensitivity, spatial resolution, and field of view, we conclude that the ngVLA at 2cm will efficiently probe IMBH masses for tens of thousands of GCs. Finding IMBHs in GCs could validate a formation channel for seed BHs in the early universe, underpin gravitational wave predictions for space missions, and test scaling relations between stellar systems and the central BHs they host. The NRAO is a facility of the NSF, operated under cooperative agreement by AUI, Inc.

VLT photometry in the Antlia cluster: the giant ellipticals NGC3258 and NGC3268 and their globular cluster systems

NASA Astrophysics Data System (ADS)

Bassino, Lilia P.; Richtler, Tom; Dirsch, Boris

2008-05-01

We present a deep Very Large Telescope (VLT) photometry in the regions surrounding the two dominant galaxies of the Antlia cluster, the giant ellipticals NGC3258 and NGC3268. We construct the luminosity functions of their globular cluster systems (GCSs) and determine their distances through the turn-over magnitudes. These distances are in good agreement with those obtained by the SBF method. There is some, but not conclusive, evidence that the distance to NGC3268 is larger by several Mpc. The GCSs colour distributions are bimodal but the brightest globular clusters (GCs) show a unimodal distribution with an intermediate colour peak. The radial distributions of both GCSs are well fitted by de Vaucouleurs laws up to 5arcmin. Red GCs present a steeper radial density profile than the blue GCs, and follow closely the galaxies' brightness profiles. Total GC populations are estimated to be about 6000 +/- 150GCs in NGC3258 and NGC4750 +/- 150GCs in NGC3268. We discuss the possible existence of GCs in a field located between the two giant galaxies (intracluster GCs). Their luminosity functions and number densities are consistent with the two GCSs overlapping in projection. Based on observations carried out at the European Southern Observatory, Paranal (Chile). Programme 71.B-0122(A). E-mail: lbassino@fcaglp.unlp.edu.ar (LPB); tom@mobydick.cfm.udec.cl (TR); borischacabuco@yahoo.co.uk (BD)

The MICE grand challenge lightcone simulation - I. Dark matter clustering

NASA Astrophysics Data System (ADS)

Fosalba, P.; Crocce, M.; Gaztañaga, E.; Castander, F. J.

2015-04-01

We present a new N-body simulation from the Marenostrum Institut de Ciències de l'Espai (MICE) collaboration, the MICE Grand Challenge (MICE-GC), containing about 70 billion dark matter particles in a (3 Gpc h-1)3 comoving volume. Given its large volume and fine spatial resolution, spanning over five orders of magnitude in dynamic range, it allows an accurate modelling of the growth of structure in the universe from the linear through the highly non-linear regime of gravitational clustering. We validate the dark matter simulation outputs using 3D and 2D clustering statistics, and discuss mass-resolution effects in the non-linear regime by comparing to previous simulations and the latest numerical fits. We show that the MICE-GC run allows for a measurement of the BAO feature with per cent level accuracy and compare it to state-of-the-art theoretical models. We also use sub-arcmin resolution pixelized 2D maps of the dark matter counts in the lightcone to make tomographic analyses in real and redshift space. Our analysis shows the simulation reproduces the Kaiser effect on large scales, whereas we find a significant suppression of power on non-linear scales relative to the real space clustering. We complete our validation by presenting an analysis of the three-point correlation function in this and previous MICE simulations, finding further evidence for mass-resolution effects. This is the first of a series of three papers in which we present the MICE-GC simulation, along with a wide and deep mock galaxy catalogue built from it. This mock is made publicly available through a dedicated web portal, http://cosmohub.pic.es.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dalessandro, E.; Lapenna, E.; Mucciarelli, A.

We used a combination of optical and near-UV Hubble Space Telescope photometry and FLAMES/ESO-VLT high-resolution spectroscopy to characterize the stellar content of the old and massive globular cluster (GC) NGC 121 in the Small Magellanic Cloud (SMC). We report on the detection of multiple stellar populations, the first case in the SMC stellar cluster system. This result enforces the emerging scenario in which the presence of multiple stellar populations is a distinctive-feature of old and massive GCs regardless of the environment, as far as the light-element distribution is concerned. We find that second-generation (SG) stars are more centrally concentrated thanmore » first-generation (FG) ones. More interestingly, at odds with what is typically observed in Galactic GCs, we find that NGC 121 is the only cluster so far to be dominated by FG stars that account for more than 65% of the total cluster mass. In the framework where GCs were born with 90%–95% of FG stars, this observational finding would suggest that either NGC 121 experienced a milder stellar mass-loss with respect to Galactic GCs or it formed a smaller fraction of SG stars.« less

Draft Genome Sequence of Rhodobacteraceae Strain PD-2, an Algicidal Bacterium with a Quorum-Sensing System, Isolated from the Marine Microalga Prorocentrum donghaiense.

PubMed

Zheng, Li; Cui, Zhisong; Xu, Luyan; Sun, Chengjun; Powell, Ryan J; Hill, Russell T

2015-02-19

Rhodobacteraceae strain PD-2 was isolated from the marine microalga Prorocentrum donghaiense. It has algicidal activity toward its host and could produce N-acylhomoserine lactone signals. Here, we present the draft genome of strain PD-2, which contains 5,227,214 bp with an average GC content of 66.19%. There were 4,864 encoding gene sequences and two clusters of luxI and luxR homologues identified. Copyright © 2015 Zheng et al.

Impurity profiling of a chemical weapon precursor for possible forensic signatures by comprehensive two-dimensional gas chromatography/mass spectrometry and chemometrics.

PubMed

Hoggard, Jamin C; Wahl, Jon H; Synovec, Robert E; Mong, Gary M; Fraga, Carlos G

2010-01-15

In this report we present the feasibility of using analytical and chemometric methodologies to reveal and exploit the chemical impurity profiles from commercial dimethyl methylphosphonate (DMMP) samples to illustrate the type of forensic information that may be obtained from chemical-attack evidence. Using DMMP as a model compound of a toxicant that may be used in a chemical attack, we used comprehensive two-dimensional gas chromatography/time-of-flight mass spectrometry (GC x GC/TOF-MS) to detect and identify trace organic impurities in six samples of commercially acquired DMMP. The GC x GC/TOF-MS data was analyzed to produce impurity profiles for all six DMMP samples using 29 analyte impurities. The use of PARAFAC for the mathematical resolution of overlapped GC x GC peaks ensured clean spectra for the identification of many of the detected analytes by spectral library matching. The use of statistical pairwise comparison revealed that there were trace impurities that were quantitatively similar and different among five of the six DMMP samples. Two of the DMMP samples were revealed to have identical impurity profiles by this approach. The use of nonnegative matrix factorization indicated that there were five distinct DMMP sample types as illustrated by the clustering of the multiple DMMP analyses into five distinct clusters in the scores plots. The two indistinguishable DMMP samples were confirmed by their chemical supplier to be from the same bulk source. Sample information from the other chemical suppliers supported the idea that the other four DMMP samples were likely from different bulk sources. These results demonstrate that the matching of synthesized products from the same source is possible using impurity profiling. In addition, the identified impurities common to all six DMMP samples provide strong evidence that basic route information can be obtained from impurity profiles. Finally, impurities that may be unique to the sole bulk manufacturer of DMMP were found in some of the DMMP samples.

[Profile-effect on quality control of Houttuynia cordata injection].

PubMed

Lu, Hong-mei; Liang, Yi-zeng; Qian, Pin

2005-12-01

To find corresponding relationship between the fingerprint of Houttuynia cordata injections from different factories and their effects. Houttuynia cordata injections from six different factories were determined by gas chromatography (GC) and gas chromatography-mass spectra (GC-MS), and GC fingerprints were classified by hierarchical clustering. The anti-inflammatory activity of Houttuynia cordata injections was characterized through the rat pleurisy model induced by carrageenin and the mice ear edema model by dimethylbenzene. The anti-inflammatory effect of the injections from the first class factories on the two model was significant, while those from the second class not. GC-MS analysis result indicated that main effect compounds in Houttuynia cordata injections are methyl n-nonyl ketone, decanoylacetaldehyde, lauryl aldehyde, capryl aldehyde, beta-pinene, beta-linalool, 1-nonanol, 4-terpineol, alpha-terpineol, bornyl acetate, n-decanoic acid and acetic acid, geraniol ester etc. There is corresponding relationship between the fingerprint of Houttuynia cordata injections and effect to a certain extent.

Plasmodium berghei NK65 in Combination with IFN-γ Induces Endothelial Glucocorticoid Resistance via Sustained Activation of p38 and JNK

PubMed Central

Zielińska, Karolina A.; de Cauwer, Lode; Knoops, Sofie; Van der Molen, Kristof; Sneyers, Alexander; Thommis, Jonathan; De Souza, J. Brian; Opdenakker, Ghislain; De Bosscher, Karolien; Van den Steen, Philippe E.

2017-01-01

Malaria-associated acute respiratory distress syndrome (MA-ARDS) is an often lethal complication of malaria. Currently, no adequate therapy for this syndrome exists. Although glucocorticoids (GCs) have been used to improve clinical outcome of ARDS, their therapeutic benefits remain unclear. We previously developed a mouse model of MA-ARDS, in which dexamethasone treatment revealed GC resistance. In the present study, we investigated GC sensitivity of mouse microvascular lung endothelial cells stimulated with interferon-γ (IFN-γ) and Plasmodium berghei NK65 (PbNK65). Upon challenge with IFN-γ alone, dexamethasone inhibited the expression of CCL5 (RANTES) by 90% and both CCL2 (MCP-1) and CXCL10 (IP-10) by 50%. Accordingly, whole transcriptome analysis revealed that dexamethasone differentially affected several gene clusters and in particular inhibited a large cluster of IFN-γ-induced genes, including chemokines. In contrast, combined stimulation with IFN-γ and PbNK65 extract impaired inhibitory actions of GCs on chemokine release, without affecting the capacity of the GC receptor to accumulate in the nucleus. Subsequently, we investigated the effects of GCs on two signaling pathways activated by IFN-γ. Dexamethasone left phosphorylation and protein levels of signal transducer and activator of transcription 1 (STAT1) unhampered. In contrast, dexamethasone inhibited the IFN-γ-induced activation of two mitogen-activated protein kinases (MAPK), JNK, and p38. However, PbNK65 extract abolished the inhibitory effects of GCs on MAPK signaling, inducing GC resistance. These data provide novel insights into the mechanisms of GC actions in endothelial cells and show how malaria may impair the beneficial effects of GCs. PMID:29033931

Holocentric chromosomes of psocids (Insecta, Psocoptera) analysed by C-banding, silver impregnation and sequence specific fluorochromes CMA3 and DAPI.

PubMed

Golub, Natalia V; Nokkala, Seppo; Kuznetsova, Valentina G

2004-01-01

The pattern of nucleolus attachment and C-heterochromatin distribution and molecular composition in the karyotypes of psocid species Psococerastis gibbosa (2n = 16+X), Blaste conspurcata (2n = 16+X) and Amphipsocus japonicus (2n = 14+neo-XY) were studied by C-banding, silver impregnation and sequence specific fluorochromes CMA3 and DAPI. Every species was found to have a single nucleolus in male meiosis. In P. gibbosa the nucleolus is attached to an autosomal bivalent; in B. conspurcata to the X-chromosome; in A. japonicus to the neo-XY bivalent. The species show a rather small amount of constitutive heterochromatin, C-blocks demonstrating telomeric localization with rare exceptions. P. gibbosa is characterized by a polymorphism for C-blocks occurrence and distribution. In the autosomes of this species, C-heterochromatin consists of AT-rich DNA except for the nucleolus organizing region, which is also GC-rich; the X-chromosome shows both AT- and GC-rich clusters. In A. japonicus and B. conspurcata, C-heterochromatin of the autosomes and sex chromosomes consists of both GC-rich and AT-rich DNA clusters, which are largely co-localized.

The comparison of solid phase microextraction-GC and static headspace-GC for determination of solvent residues in vegetable oils.

PubMed

Ligor, Magdalena; Buszewski, Bogusław

2008-02-01

The objective of these investigations has been the determination of volatile organic compounds including residue solvents present in vegetable oil samples. Some olive oil, rape oil, sunflower oil, soy-bean oil, pumpkin oil, grape oil, rice oil as well as hazel-nut oil samples were analysed. Among residue solvents the following compounds have been mentioned: acetone, n-hexane, benzene, and toluene. Some experiments for the solid phase microextraction (SPME)-GC-flame ionisation detection (FID) were performed to examine extraction conditions such as fiber exposure time, temperature of extraction, and temperature of desorption. Various SPME fibers such as polydimethylsiloxane, Carboxen/polydimethylsiloxane and polydimethylsiloxane/divinylbenzene coatings were used for the isolation of tested compounds from vegetable oil samples. After optimisation of SPME, real vegetable oil samples were examined using SPME-GC/MS. Based on preliminary experiments the qualitative and quantitative analyses for the determination of acetone, n-hexane, benzene and toluene were performed by SPME-GC-FID and static head-space (SHS)-GC-FID methods. The regression coefficients for calibration curves for the examined compounds were R(2) > or = 0.992. This shows that the used method is linear in the examined concentration range (0.005-0.119 mg/kg for SPME-GC-FID and 0.003-0.728 mg/kg for SHS-GC-FID). Chemical properties of analysed vegetable oils have been characterised by chemometric procedure (cluster analysis).

Proper motions in the VVV Survey: Results for more than 15 million stars across NGC 6544

NASA Astrophysics Data System (ADS)

Contreras Ramos, R.; Zoccali, M.; Rojas, F.; Rojas-Arriagada, A.; Gárate, M.; Huijse, P.; Gran, F.; Soto, M.; Valcarce, A. A. R.; Estévez, P. A.; Minniti, D.

2017-12-01

Context. In the last six years, the VISTA Variable in the Vía Láctea (VVV) survey mapped 562 sq. deg. across the bulge and southern disk of the Galaxy. However, a detailed study of these regions, which includes 36 globular clusters (GCs) and thousands of open clusters is by no means an easy challenge. High differential reddening and severe crowding along the line of sight makes highly hamper to reliably distinguish stars belonging to different populations and/or systems. Aims: The aim of this study is to separate stars that likely belong to the Galactic GC NGC 6544 from its surrounding field by means of proper motion (PM) techniques. Methods: This work was based upon a new astrometric reduction method optimized for images of the VVV survey. Results: PSF-fitting photometry over the six years baseline of the survey allowed us to obtain a mean precision of 0.51 mas yr-1, in each PM coordinate, for stars with Ks< 15 mag. In the area studied here, cluster stars separate very well from field stars, down to the main sequence turnoff and below, allowing us to derive for the first time the absolute PM of NGC 6544. Isochrone fitting on the clean and differential reddening corrected cluster color magnitude diagram yields an age of 11-13 Gyr, and metallicity [Fe/H] =-1.5 dex, in agreement with previous studies restricted to the cluster core. We were able to derive the cluster orbit assuming an axisymmetric model of the Galaxy and conclude that NGC 6544 is likely a halo GC. We have not detected tidal tail signatures associated to the cluster, but a remarkable elongation in the galactic center direction has been found. The precision achieved in the PM determination also allows us to separate bulge stars from foreground disk stars, enabling the kinematical selection of bona fide bulge stars across the whole survey area. Conclusions: Kinematical techniques are a fundamental step toward disentangling different stellar populations that overlap in a studied field. Our results show that VVV data is perfectly suitable for this kind of analysis. Based on observations taken with ESO telescopes at Paranal Observatory under programme IDs 179.B-2002.

Comparison of traditional gas chromatography (GC), headspace GC, and the microbial identification library GC system for the identification of Clostridium difficile.

PubMed Central

Cundy, K V; Willard, K E; Valeri, L J; Shanholtzer, C J; Singh, J; Peterson, L R

1991-01-01

Three gas chromatography (GC) methods were compared for the identification of 52 clinical Clostridium difficile isolates, as well as 17 non-C. difficile Clostridium isolates. Headspace GC and Microbial Identification System (MIS) GC, an automated system which utilizes a software library developed at the Virginia Polytechnic Institute to identify organisms based on the fatty acids extracted from the bacterial cell wall, were compared against the reference method of traditional GC. Headspace GC and MIS were of approximately equivalent accuracy in identifying the 52 C. difficile isolates (52 of 52 versus 51 of 52, respectively). However, 7 of 52 organisms required repeated sample preparation before an identification was achieved by the MIS method. Both systems effectively differentiated C. difficile from non-C. difficile clostridia, although the MIS method correctly identified only 9 of 17. We conclude that the headspace GC system is an accurate method of C. difficile identification, which requires only one-fifth of the sample preparation time of MIS GC and one-half of the sample preparation time of traditional GC. PMID:2007632

Functional characterization of a short peptidoglycan recognition protein, PGRP5 in grass carp Ctenopharyngodon idella.

PubMed

Li, Jun Hua; Chang, Ming Xian; Xue, Na Na; Nie, P

2013-08-01

Peptidoglycan recognition proteins (PGRPs), which are evolutionarily conserved from insects to mammals, recognize bacterial peptidoglycan (PGN) and function in antibacterial innate immunity. In this study, a short-form PGRP, designated as gcPGRP5 was identified from grass carp Ctenopharyngodon idella. The deduced amino acid sequence of gcPGRP5 is composed of 180 residues with a conserved PGRP domain at the C-terminus. The gcPGRP5 gene consists of four exons and three introns, spacing approximately 2.3 kb in genomic sequence. Phylogenetic analysis demonstrated that the gcPGRP5 is clustered with other PGRP-S identified in teleost fish. The gcPGRP5 is constitutively expressed in all organs/tissues examined, and its expression was significantly induced in CIK cells treated with lipoteichoic acid (LTA), polyinosinic polycytidylic acid (Poly I:C) and PGN. Fluorescence analysis showed that gcPGRP5 is distributed in cytoplasm of CIK cells, and cell lysates from CIK cells transfected with pTurbo-gcPGRP5-GFP and ptGFP1-gcPGRP5 plasmids display the binding activity and peptidoglycan-lytic amidase activity toward Lys-PGN from Staphylococcus aureus and Dap-PGN from Bacillus subtilis. Furthermore, heat-shock protein70 (Hsp70), and MyD88, an adaptor molecule in Toll-like receptor pathway, had an increased expression in CIK cells overexpressed with gcPGRP5. It is thus indicated that gcPGRP5 exhibits amidase activity, and also possesses roles in anti-stress, and in Toll-like receptor signaling pathway. Copyright © 2013 Elsevier Ltd. All rights reserved.

NONLINEAR COLOR-METALLICITY RELATIONS OF GLOBULAR CLUSTERS. II. A TEST ON THE NONLINEARITY SCENARIO FOR COLOR BIMODALITY USING THE u-BAND COLORS: THE CASE OF M87 (NGC 4486)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yoon, Suk-Jin; Lee, Sang-Yoon; Kim, Hak-Sub

2011-12-20

The optical color distributions of globular clusters (GCs) in most large elliptical galaxies are bimodal. Based on the assumed linear relationship between GC colors and their metallicities, the bimodality has been taken as evidence of two GC subsystems with different metallicities in each galaxy and has led to a number of theories in the context of galaxy formation. More recent observations and modeling of GCs, however, suggests that the color-metallicity relations (CMRs) are inflected, and thus colors likely trace metallicities in a nonlinear manner. The nonlinearity could produce bimodal color distributions from a broad underlying metallicity spread, even if itmore » is unimodal. Despite the far-reaching implications, whether CMRs are nonlinear and whether the nonlinearity indeed causes the color bimodality are still open questions. Given that the spectroscopic refinement of CMRs is still very challenging, we here propose a new photometric technique to probe the possible nonlinear nature of CMRs. In essence, a color distribution of GCs is a 'projected' distribution of their metallicities. Since the form of CMRs hinges on which color is used, the shape of color distributions varies depending significantly on the colors. Among other optical colors, the u-band related colors (e.g., u - g and u - z) are theoretically predicted to exhibit significantly less inflected CMRs than other preferred CMRs (e.g., for g - z). As a case study, we performed the Hubble Space Telescope (HST)/WFPC2 archival u-band photometry for the M87 (NGC 4486) GC system with confirmed color bimodality. We show that the u-band color distributions are significantly different from that of g - z and consistent with our model predictions. With more u-band measurements, this method will support or rule out the nonlinear CMR scenario for the origin of GC color bimodality with high confidence. The HST/WFC3 observations in F336W for nearby large elliptical galaxies are highly anticipated in this regard.« less

The MetabolomeExpress Project: enabling web-based processing, analysis and transparent dissemination of GC/MS metabolomics datasets.

PubMed

Carroll, Adam J; Badger, Murray R; Harvey Millar, A

2010-07-14

Standardization of analytical approaches and reporting methods via community-wide collaboration can work synergistically with web-tool development to result in rapid community-driven expansion of online data repositories suitable for data mining and meta-analysis. In metabolomics, the inter-laboratory reproducibility of gas-chromatography/mass-spectrometry (GC/MS) makes it an obvious target for such development. While a number of web-tools offer access to datasets and/or tools for raw data processing and statistical analysis, none of these systems are currently set up to act as a public repository by easily accepting, processing and presenting publicly submitted GC/MS metabolomics datasets for public re-analysis. Here, we present MetabolomeExpress, a new File Transfer Protocol (FTP) server and web-tool for the online storage, processing, visualisation and statistical re-analysis of publicly submitted GC/MS metabolomics datasets. Users may search a quality-controlled database of metabolite response statistics from publicly submitted datasets by a number of parameters (eg. metabolite, species, organ/biofluid etc.). Users may also perform meta-analysis comparisons of multiple independent experiments or re-analyse public primary datasets via user-friendly tools for t-test, principal components analysis, hierarchical cluster analysis and correlation analysis. They may interact with chromatograms, mass spectra and peak detection results via an integrated raw data viewer. Researchers who register for a free account may upload (via FTP) their own data to the server for online processing via a novel raw data processing pipeline. MetabolomeExpress https://www.metabolome-express.org provides a new opportunity for the general metabolomics community to transparently present online the raw and processed GC/MS data underlying their metabolomics publications. Transparent sharing of these data will allow researchers to assess data quality and draw their own insights from published metabolomics datasets.

Characterization of two genes encoding leucine-rich repeat-containing proteins in grass carp Ctenopharyngodon idellus.

PubMed

Chang, M X; Nie, P; Xie, H X; Sun, B J; Gao, Q

2005-01-01

The cDNAs and genes of two different types of leucine-rich repeat-containing proteins from grass carp (Ctenopharyngodon idellus) were cloned. Homology search revealed that the two genes, designated as GC-GARP and GC-LRG, have 37% and 32% deduced amino-acid sequence similarities with human glycoprotein A repetitions predominant precursor (GARP) and leucine-rich alpha2-glycoprotein (LRG), respectively. The cDNAs of GC-GARP and GC-LRG encoded 664 and 339 amino acid residues, respectively. GC-GARP and GC-LRG contain many distinct structural and/or functional motifs of the leucine-rich repeat (LRR) subfamily, such as multiple conserved 11-residue segments with the consensus sequence LxxLxLxxN/CxL (x can be any amino acid). The genes GC-GARP and GC-LRG consist of two exons, with 4,782 bp and 2,119 bp in total length, respectively. The first exon of each gene contains a small 5'-untranslated region and partial open reading frame. The putative promoter region of GC-GARP was found to contain transcription factor binding sites for GATA-1, IRF4, Oct-1, IRF-7, IRF-1, AP1, GATA-box and NFAT, and the promoter region of GC-LRG for MYC-MAX, MEIS1, ISRE, IK3, HOXA9 and C/EBP alpha. Phylogenetic analysis showed that GC-GARP and mammalian GARPs were clustered into one branch, while GC-LRG and mammalian LRGs were in another branch. The GC-GARP gene was only detected in head kidney, and GC-LRG in the liver, spleen and heart in the copepod (Sinergasilus major)-infected grass carp, indicating the induction of gene expression by the parasite infection. The results obtained in the present study provide insight into the structure of fish LRR genes, and further study should be carried out to understand the importance of LRR proteins in host-pathogen interactions.

Evidence for top-heavy stellar initial mass functions with increasing density and decreasing metallicity

NASA Astrophysics Data System (ADS)

Marks, Michael; Kroupa, Pavel; Dabringhausen, Jörg; Pawlowski, Marcel S.

2012-05-01

Residual-gas expulsion after cluster formation has recently been shown to leave an imprint in the low-mass present-day stellar mass function (PDMF) which allowed the estimation of birth conditions of some Galactic globular clusters (GCs) such as mass, radius and star formation efficiency. We show that in order to explain their characteristics (masses, radii, metallicity and PDMF) their stellar initial mass function (IMF) must have been top heavy. It is found that the IMF is required to become more top heavy the lower the cluster metallicity and the larger the pre-GC cloud-core density are. The deduced trends are in qualitative agreement with theoretical expectation. The results are consistent with estimates of the shape of the high-mass end of the IMF in the Arches cluster, Westerlund 1, R136 and NGC 3603, as well as with the IMF independently constrained for ultra-compact dwarf galaxies (UCDs). The latter suggests that GCs and UCDs might have formed along the same channel or that UCDs formed via mergers of GCs. A Fundamental Plane is found which describes the variation of the IMF with density and metallicity of the pre-GC cloud cores. The implications for the evolution of galaxies and chemical enrichment over cosmological times are expected to be major.

Uncovering multiple populations in NGC 7099 (M 30) using Washington photometry

NASA Astrophysics Data System (ADS)

Frelijj, H.; Geisler, D.; Cummings, J.; Cohen, R. E.; Mauro, F.; Munoz, C.; Villanova, S.; Tang, B.

2017-12-01

Over the last decade, the classical definition of globular clusters (GCs) as simple stellar populations was revolutionized due to the discovery of 'multiple populations' (MPs). However, our knowledge of this phenomenon and its characteristics is still lacking greatly observationally, and there is currently no scenario which adequately explains its origin. It is therefore important to study as many GCs as possible to characterize whether or not they have MPs, and determine their detailed behaviour to enlighten formation scenarios, using a wide range of techniques. The Washington photometric system has proved to be useful to find MPs, thanks mainly to the ultraviolet (UV)-sensitivity and high efficiency of the C filter. We search for MPs in the Galactic GC NGC 7099 (M30), the second GC being searched for MPs using this system. We obtained photometric data using the Swope 1-m telescope at Las Campanas Observatory, as well as the 4-m SOAR facility. Our reduction procedure included Addstar experiments to properly assess photometric errors. We find a clear signal of MPs based on an intrinsically wide colour spread on the RGB, in particular due to a relatively small fraction of stars significantly bluer than the main RGB locus. These stars should correspond to so-called first-generation stars, which we estimate to be roughly 15 per cent of the total. However, we find these first-generation stars to be more spatially concentrated than their second-generation counterparts, which is the opposite to the general trend found in other clusters. We briefly discuss possible explanations for this phenomenon.

Mapping out the origins of compact stellar systems

NASA Astrophysics Data System (ADS)

Romanowsky, Aaron J.; Brodie, Jean P.; SAGES Collaboration

2017-03-01

We present a suite of extragalactic explorations of the origins and nature of globular clusters (GCs) and ultra-compact dwarfs (UCDs), and the connections between them. An example of GC metallicity bimodality is shown to reflect underlying, distinct metal-poor and metal-rich stellar halo populations. Metallicity-matching methods are used to trace the birth sites and epochs of GCs in giant E/S0s, pointing to clumpy disk galaxies at z ~ 3 for the metal-rich GCs, and to a combination of accreted and in-situ formation modes at z ~ 5-6 for the metal-poor GCs. An increasingly diverse zoo of compact stellar systems is being discovered, including objects that bridge the gaps between UCDs and faint fuzzies, and between UCDs and compact ellipticals. Many of these have properties pointing to origins as the stripped nuclei of larger galaxies, and a smoking-gun example is presented of an ω Cen-like star cluster embedded in a tidal stream.

Characterization of volatile profile from ten different varieties of Chinese jujubes by HS-SPME/GC-MS coupled with E-nose.

PubMed

Chen, Qinqin; Song, Jianxin; Bi, Jinfeng; Meng, Xianjun; Wu, Xinye

2018-03-01

Volatile profile of ten different varieties of fresh jujubes was characterized by HS-SPME/GC-MS (headspace solid phase micro-extraction combined with gas chromatography-mass spectrometry) and E-nose (electronic nose). GC-MS results showed that a total of 51 aroma compounds were identified in jujubes, hexanoic acid, hexanal, (E)-2-hexenal, (Z)-2-heptenal, benzaldehyde and (E)-2-nonenal were the main aroma components with contributions that over 70%. Differentiation of jujube varieties was conducted by cluster analysis of GC-MS data and principal component analysis & linear discriminant analysis of E-nose data. Both results showed that jujubes could be mainly divided into two groups: group A (JZ, PDDZ, JSXZ and LWZZ) and group B (BZ, YZ, MZ, XZ and DZ). There were significant differences in contents of alcohols, acids and aromatic compounds between group A and B. GC-MS coupled with E-nose could be a fast and accurate method to identify the general flavor difference in different varieties of jujubes. Copyright © 2017 Elsevier Ltd. All rights reserved.

The outer halo globular cluster system of M31 - I. The final PAndAS catalogue

NASA Astrophysics Data System (ADS)

Huxor, A. P.; Mackey, A. D.; Ferguson, A. M. N.; Irwin, M. J.; Martin, N. F.; Tanvir, N. R.; Veljanoski, J.; McConnachie, A.; Fishlock, C. K.; Ibata, R.; Lewis, G. F.

2014-08-01

We report the discovery of 59 globular clusters (GCs) and two candidate GCs in a search of the halo of M31, primarily via visual inspection of Canada-France-Hawaii Telescope/MegaCam imagery from the Pan-Andromeda Archaeological Survey (PAndAS). The superior quality of these data also allows us to check the classification of remote objects in the Revised Bologna Catalogue (RBC), plus a subset of GC candidates drawn from Sloan Digital Sky Survey (SDSS) imaging. We identify three additional new GCs from the RBC, and confirm the GC nature of 11 SDSS objects (8 of which appear independently in our remote halo catalogue); the remaining 188 candidates across both lists are either foreground stars or background galaxies. Our new catalogue represents the first uniform census of GCs across the M31 halo - we find clusters to the limit of the PAndAS survey area at projected radii of up to Rproj ˜ 150 kpc. Tests using artificial clusters reveal that detection incompleteness cuts in at luminosities below MV = -6.0; our 50 per cent completeness limit is MV ≈ -4.1. We construct a uniform set of PAndAS photometric measurements for all known GCs outside Rproj = 25 kpc, and any new GCs within this radius. With these data, we update results from Huxor et al., investigating the luminosity function (LF), colours and effective radii of M31 GCs with a particular focus on the remote halo. We find that the GCLF is clearly bimodal in the outer halo (Rproj > 30 kpc), with the secondary peak at MV ˜ -5.5. We argue that the GCs in this peak have most likely been accreted along with their host dwarf galaxies. Notwithstanding, we also find, as in previous surveys, a substantial number of GCs with above-average luminosity in the outer M31 halo - a population with no clear counterpart in the Milky Way.

A novel approach to transforming a non-targeted metabolic profiling method to a pseudo-targeted method using the retention time locking gas chromatography/mass spectrometry-selected ions monitoring.

PubMed

Li, Yong; Ruan, Qiang; Li, Yanli; Ye, Guozhu; Lu, Xin; Lin, Xiaohui; Xu, Guowang

2012-09-14

Non-targeted metabolic profiling is the most widely used method for metabolomics. In this paper, a novel approach was established to transform a non-targeted metabolic profiling method to a pseudo-targeted method using the retention time locking gas chromatography/mass spectrometry-selected ion monitoring (RTL-GC/MS-SIM). To achieve this transformation, an algorithm based on the automated mass spectral deconvolution and identification system (AMDIS), GC/MS raw data and a bi-Gaussian chromatographic peak model was developed. The established GC/MS-SIM method was compared with GC/MS-full scan (the total ion current and extracted ion current, TIC and EIC) methods, it was found that for a typical tobacco leaf extract, 93% components had their relative standard deviations (RSDs) of relative peak areas less than 20% by the SIM method, while 88% by the EIC method and 81% by the TIC method. 47.3% components had their linear correlation coefficient higher than 0.99, compared with 5.0% by the EIC and 6.2% by TIC methods. Multivariate analysis showed the pooled quality control samples clustered more tightly using the developed method than using GC/MS-full scan methods, indicating a better data quality. With the analysis of the variance of the tobacco samples from three different planting regions, 167 differential components (p<0.05) were screened out using the RTL-GC/MS-SIM method, but 151 and 131 by the EIC and TIC methods, respectively. The results show that the developed method not only has a higher sensitivity, better linearity and data quality, but also does not need complicated peak alignment among different samples. It is especially suitable for the screening of differential components in the metabolic profiling investigation. Copyright © 2012 Elsevier B.V. All rights reserved.

Metabolite profiling approach reveals the interface of primary and secondary metabolism in colored cauliflowers (Brassica oleracea L. ssp. botrytis).

PubMed

Park, Soo-Yun; Lim, Sun-Hyung; Ha, Sun-Hwa; Yeo, Yunsoo; Park, Woo Tae; Kwon, Do Yeon; Park, Sang Un; Kim, Jae Kwang

2013-07-17

In the present study, carotenoids, anthocyanins, and phenolic acids of cauliflowers ( Brassica oleracea L. ssp. botrytis) with various colored florets (white, yellow, green, and purple) were characterized to determine their phytochemical diversity. Additionally, 48 metabolites comprising amino acids, organic acids, sugars, and sugar alcohols were identified using gas chromatography-time-of-flight mass spectrometry (GC-TOFMS). Carotenoid content was considerably higher in green cauliflower; anthocyanins were detected only in purple cauliflower. Phenolic acids were higher in both green and purple cauliflower. Results of partial least-squares discriminant, Pearson correlation, and hierarchical clustering analyses showed that green cauliflower is distinct on the basis of the high levels of amino acids and clusters derived from common or closely related biochemical pathways. These results suggest that GC-TOFMS-based metabolite profiling, combined with chemometrics, is a useful tool for determining phenotypic variation and identifying metabolic networks connecting primary and secondary metabolism.

A Saccharomyces cerevisiae mitochondrial DNA fragment activates Reg1p-dependent glucose-repressible transcription in the nucleus.

PubMed

Santangelo, G M; Tornow, J

1997-12-01

As part of an effort to identify random carbon-source-regulated promoters in the Saccharomyces cerevisiae genome, we discovered that a mitochondrial DNA fragment is capable of directing glucose-repressible expression of a reporter gene. This fragment (CR24) originated from the mitochondrial genome adjacent to a transcription initiation site. Mutational analyses identified a GC cluster within the fragment that is required for transcriptional induction. Repression of nuclear CR24-driven transcription required Reg1p, indicating that this mitochondrially derived promoter is a member of a large group of glucose-repressible nuclear promoters that are similarly regulated by Reg1p. In vivo and in vitro binding assays indicated the presence of factors, located within the nucleus and the mitochondria, that bind to the GC cluster. One or more of these factors may provide a regulatory link between the nucleus and mitochondria.

Comparative study of volatile components from male and female flower buds of Populus × tomentosa by HS-SPME-GC-MS.

PubMed

Xu, Liang; Liu, Haiping; Ma, Yucui; Wu, Cui; Li, Ruiqi; Chao, Zhimao

2018-06-13

The differences of volatile components in male (MFB) and female flower buds (FFB) of Populus × tomentosa were analysed and compared by HS-SPME with GC-MS for the first time. A total of 34 compounds were identified. Two clusters were clearly divided into male and female by hierarchical clustering analysis. Both the male and female flower buds showed methyl salicylate (22.83 and 24.09%, respectively) and 2-hydroxy-benzaldehyde (10.05 and 12.41%, respectively) as the main volatile constituents. The content of 2-cyclohexen-1-one, benzyl benzoate, and methyl benzoate in FFB was remarkably higher than in MFB. In contrast, the content of ethyl benzoate in MFB was greater than that in FFB. The phenomena showed the characteristic differences between MFB and FFB of P. × tomentosa, which enriched the basic studies on dioecious plant.

Comparative Study of Fatty Acids Profile in Eleven Wild Mushrooms of Boletacea and Russulaceae Families.

PubMed

Dimitrijevic, Marija V; Mitic, Violeta D; Jovanovic, Olga P; Stankov Jovanovic, Vesna P; Nikolic, Jelena S; Petrovic, Goran M; Stojanovic, Gordana S

2018-01-01

Eleven species of wild mushrooms which belong to Boletaceae and Russulaceae families were examined by gas chromatography (GC) and gas chromatography-mass spectrometry (GC/MS) analysis for the presence of fatty acids. As far as we know, the fatty acid profiles of B. purpureus and B. rhodoxanthus were described for the first time. Twenty-six fatty acids were determined. Linoleic (19.5 - 72%), oleic (0.11 - 64%), palmitic (5.9 - 22%) and stearic acids (0.81 - 57%) were present in the highest contents. In all samples, unsaturated fatty acids dominate. Agglomerative hierarchical clustering was used to display the correlation between the fatty acids and their relationships with the mushroom species. Based on the fatty acids profile in the samples, the mushrooms can be divided into two families: Boletaceae and Russulaceae families, using cluster analysis. © 2018 Wiley-VHCA AG, Zurich, Switzerland.

The interplay between star formation and the nuclear environment of our Galaxy: deep X-ray observations of the Galactic centre Arches and Quintuplet clusters

NASA Astrophysics Data System (ADS)

Wang, Q. Daniel; Dong, Hui; Lang, Cornelia

2006-09-01

The Galactic centre (GC) provides a unique laboratory for a detailed examination of the interplay between massive star formation and the nuclear environment of our Galaxy. Here, we present a 100-ks Chandra Advanced CCD Imaging Spectrometer (ACIS) observation of the Arches and Quintuplet star clusters. We also report on a complementary mapping of the dense molecular gas near the Arches cluster made with the Owens Valley Millimeter Array. We present a catalogue of 244 point-like X-ray sources detected in the observation. Their number-flux relation indicates an overpopulation of relatively bright X-ray sources, which are apparently associated with the clusters. The sources in the core of the Arches and Quintuplet clusters are most likely extreme colliding wind massive star binaries. The diffuse X-ray emission from the core of the Arches cluster has a spectrum showing a 6.7-keV emission line and a surface intensity profile declining steeply with radius, indicating an origin in a cluster wind. In the outer regions near the Arches cluster, the overall diffuse X-ray enhancement demonstrates a bow shock morphology and is prominent in the Fe Kα 6.4-keV line emission with an equivalent width of ~1.4 keV. Much of this enhancement may result from an ongoing collision between the cluster and the adjacent molecular cloud, which have a relative velocity >~120km-1. The older and less-compact Quintuplet cluster contains much weaker X-ray sources and diffuse emission, probably originating from low-mass stellar objects as well as a cluster wind. However, the overall population of these objects, constrained by the observed total diffuse X-ray luminosities, is substantially smaller than expected for both clusters, if they have normal Miller & Scalo initial mass functions. This deficiency of low-mass objects may be a manifestation of the unique star formation environment of the GC, where high-velocity cloud-cloud and cloud-cluster collisions are frequent.

Giant H II Regions in the Merging System NGC 3256: Are They the Birthplaces of Globular Clusters?

NASA Astrophysics Data System (ADS)

English, J.; Freeman, K. C.

2003-03-01

CCD images and spectra of ionized hydrogen in the merging system NGC 3256 were acquired as part of a kinematic study to investigate the formation of globular clusters (GCs) during the interactions and mergers of disk galaxies. This paper focuses on the proposition by Kennicutt & Chu that giant H II regions (GHRs), with an Hα luminosity greater than 1.5×1040 ergs s-1, are birthplaces of young populous clusters (YPCs). Although, compared with some other interacting systems, NGC 3256 has relatively few (seven) giant H II complexes, these regions are comparable in total flux to about 85 30 Doradus-like giant H II regions (GHRs). The bluest, massive YPCs (Zepf et al.) are located in the vicinity of observed 30 Dor GHRs, contributing to the notion that some fraction of 30 Dor GHRs do cradle massive YPCs, as 30 Dor harbors R136. If interactions induce the formation of 30 Dor GHRs, the observed luminosities indicate that almost 900 30 Dor GHRs would form in NGC 3256 throughout its merger epoch. In order for 30 Dor GHRs to be considered GC progenitors, this number must be consistent with the specific frequencies of globular clusters estimated for elliptical galaxies formed via mergers of spirals (Ashman & Zepf). This only requires that about 10% of NGC 3256's 900 30 Dor GHRs harbor YPCs, which survive several gigayears and have masses >=MR136.

Characterization of fundamental catalytic properties of MoS2/WS2 nanotubes and nanoclusters for desulfurization catalysis - a surface temperature study

DOE Office of Scientific and Technical Information (OSTI.GOV)

U. Burghaus

2012-07-05

The prior project consisted of two main project lines. First, characterization of novel nanomaterials for hydrodesulfurization (HDS) applications. Second, studying more traditional model systems for HDS such as vapor-deposited silica-supported Mo and MoSx clusters. In the first subproject, we studied WS2 and MoS2 fullerene-like nanoparticles as well as WS2 nanotubes. Thiophene (C4H4S) was used as the probe molecule. Interestingly, metallic and sulfur-like adsorption sites could be identified on the silica-supported fullerene-particles system. Similar structures are seen for the traditional system (vapor-deposited clusters). Thus, this may be a kinetics fingerprint feature of modern HDS model systems. In addition, kinetics data allowedmore » characterization of the different adsorption sites for thiophene on and inside WS2 nanotube bundles. The latter is a unique feature of nanotubes that has not been reported before for any inorganic nanotube system; however, examples are known for carbon nanotubes, including prior work of the PI. Although HDS has been studied for decades, utilizing nanotubes as nanosized HDS reactors has never been tried before, as far as we know. This is of interest from a fundamental perspective. Unfortunately, the HDS activity of the nanocatalysts at ultra-high vacuum (UHV) conditions was close to the detection limit of our techniques. Therefore, we propose to run experiments at ambient pressure on related nanopowder samples as part of the renewal application utilizing a now-available GC (gas chromatograph) setup. In addition, Ni and Co doped nanocatalyts are proposed for study. These dopants will boost the catalytic activity. In the second subproject of the prior grant, we studied HDS-related chemistry on more traditional supported cluster catalysts. Mo clusters supported by physical vapor deposition (PVD) on silica have been characterized. Two reaction pathways are evident when adsorbing thiophene on Mo and MoSx clusters: molecular adsorption and dissociation. PVD Mo clusters turned out to be very reactive toward thiophene bond activation. Sulfur and carbon residuals form, which poison the catalyst and sulfide the Mo clusters. Sulfided silica-supported MoSx samples are not reactive toward thiophene bond activation. In addition to S and C deposits, H2, H2S, and small organic molecules were detected in the gas phase. Catalyst reactivation procedures, including O2 and atomic hydrogen treatments, have been tested. Cluster size effects have been seen: thiophene adsorbs molecularly with larger binding energies on smaller clusters. However, larger clusters have smaller activation energy for C4H4S bond activation than smaller clusters. The latter is consistent with early catalysis studies. Kinetics and dynamics parameters have been determined quantitatively. We spent a significant amount of time on upgrades of our equipment. A 2nd-hand refurbished X-ray photoelectron spectrometer (XPS) has been integrated into the existing molecular beam scattering system and is already operational (supported by the DoE supplemental grant available in October 2009). We also added a time of flight (TOF) system to the beam scattering apparatus and improved on the accessible impact energy range (new nozzle heater and gas mixing manifold) for the beam scattering experiments. In addition, a GC-based powder atmospheric flow reactor for studies on powder samples is now operational. Furthermore, a 2nd UHV kinetics system has been upgraded as well. In summary, mostly single crystal systems have so far been considered in basic science studies about HDS. Industrial catalysts, however, can be better approximated with the supported cluster systems that we studied in this project. Furthermore, an entirely new class of HDS systems, namely fullerene-like particles and inorganic nanotubes, has been included. Studying new materials and systems has the potential to impact science and technology. The systems investigated are closely related to energy and environmental-related surface science/catalysis. This prior project, conducted at NDSU by a small team, resulted in a total of 14 printed publications,1-5, 7-12, 14, 19, 20eight months before the end of the funding period. In addition, collaborators at national laboratories and abroad were part of the projects, as proposed. More specifically, projects about HDS on MoS2 and WS2 inorganic fullerene-like nanoparticles,1, 5 inorganic WS2 nanotubes,2 Mo and MoS2 vapor-deposited nanoclusters,3 modeling,19 reviews/book chapter,7, 11 and side projects8-10 have been conducted, as proposed, acknowledging solely (exception ref.7) funding from this grant. A list of publications and coworkers is given in sect. 6.« less

The black hole at the Galactic Center: observations and models in a nutshell

NASA Astrophysics Data System (ADS)

Zakharov, Alexander

2017-12-01

The Galactic Center (Sgr A*) is a peculiar place in our Galaxy (Milky Way). Our Solar system is located at a distance around 8 kpc from the Galactic Center (GC). There were a number of different including exotic ones such as boson stars, fermion balls, neutrino balls, a cluster of neutron stars. Some of these models are significantly constrained with consequent observations and now supermassive black hole with mass around 4 × 106 M ⊙ is the preferable model for GC. Moreover, one can test alternative theories of gravity with observations of bright stars near the Galactic Center and and observations of bright structures near the black hole at the Galactic Center to reconstruct shadow structure around the black hole with current and future observational VLBI facilities such as the Event Horizon Telescope. In particular, we got a graviton mass constraint which is comparable and consistent with constraints obtained recently by the LIGO-Virgo collaboration.

[In-situ measurement of background atmospheric HCFC-142b using GC-MS and GC-ECD method].

PubMed

Guo, Li-feng; Yao, Bo; Zhou, Ling-xi; Li, Pei-chang; Xu, Lin

2013-05-01

Custom-made GC-MS and GC-ECD in-situ measurement systems were established at the Shangdianzi GAW Regional station. From May 2010 to May 2011, the precisions for GC-MS and GC-ECD systems were 0.23% and 0.88%, respectively, and the HCFC-142b mole fraction during the observation period ranged from 21 x 10(-12) to 355 x 10(-12). The result of the independent-sample T test was P > 0.05, and there was no significant difference in HCFC-142b mole fraction measured by the two systems. The small difference of HCFC-142b mole fraction measured by GC-MS and GC-ECD might be associated with the different sampling time and precision of the two systems. A statistical filter of "robust local regression" was applied to separate HCFC-142b background and pollution data. The mean difference, median difference, 25 and 75 percent difference of background data measured by GC-MS and GC-ECD were all within the precisions. The pollution events captured by the two systems showed similar characters. Results from both systems showed a higher HCFC-142b level in summer and autumn than in winter. The pollution mole fraction of the two systems showed similar seasonal changes.

A highly efficient nano-cluster artificial peroxidase and its direct electrochemistry on a nano complex modified glassy carbon electrode.

PubMed

Hong, Jun; Wang, Wei; Huang, Kun; Yang, Wei-Yun; Zhao, Ying-Xue; Xiao, Bao-Lin; Gao, Yun-Fei; Moosavi-Movahedi, Zainab; Ghourchian, Hedayatollah; Moosavi-Movahedi, Ali Akbar

2012-01-01

A nano-cluster with highly efficient peroxide activity was constructed based on nafion (NF) and cytochrome c (Cyt c). UV-Vis spectrometry and transmission electron microscopy (TEM) methods were utilized for characterization of the nano-structured enzyme or artificial peroxidase (AP). The nano-cluster was composed of a Chain-Ball structure, with an average ball size of about 40 nm. The Michaelis-Menten (K(m)) and catalytic rate (k(cat)) constants of the AP were determined to be 2.5 ± 0.4 µM and 0.069 ± 0.001 s(-1), respectively, in 50 mM PBS at pH 7.0. The catalytic efficiency of the AP was evaluated to be 0.028 ± 0.005 µM(-1) s(-1), which was 39 ± 5% as efficient as the native horseradish peroxidase (HRP). The AP was also immobilized on a functional multi-wall carbon nanotube (MWNCTs)-gold colloid nanoparticles (AuNPs) nano-complex modified glassy carbon (GC) electrode. The cyclic voltammetry of AP on the nano complex modified GC electrode showed a pair of well-defined redox peaks with a formal potential (E°') of -45 ± 2 mV (vs. Ag/AgCl) at a scan rate of 0.05 V/s. The heterogeneous electron transfer rate constant (k(s)) was evaluated to be 0.65 s(-1). The surface concentration of electroactive AP on GC electrode (Γ) was 7 × 10(-10) mol cm(-2). The apparent Michaelis-Menten constant (K(m)(app)) was 0.23 nM.

ON THE BIRTH MASSES OF THE ANCIENT GLOBULAR CLUSTERS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Conroy, Charlie; Department of Astronomy and Astrophysics, University of California, Santa Cruz, CA

All globular clusters (GCs) studied to date show evidence for internal (star-to-star) variation in their light-element abundances (including Li, C, N, O, F, Na, Mg, Al, and probably He). These variations have been interpreted as evidence for multiple star formation episodes within GCs, with secondary episodes fueled, at least in part, by the ejecta of asymptotic giant branch (AGB) stars from a first generation of stars. A major puzzle emerging from this otherwise plausible scenario is that the fraction of stars associated with the second episode of star formation is observed to be much larger than expected for a standardmore » initial mass function. The present work investigates this tension by modeling the observed anti-correlation between [Na/Fe] and [O/Fe] for 20 Galactic GCs. If the abundance pattern of the retained AGB ejecta does not depend on GC mass at fixed [Fe/H], then a strong correlation is found between the fraction of current GC stellar mass composed of pure AGB ejecta, f{sub p} , and GC mass. This fraction varies from 0.20 at low masses (10{sup 4.5} M{sub Sun }) to 0.45 at high masses (10{sup 6.5} M{sub Sun }). The fraction of mass associated with pure AGB ejecta is directly related to the total mass of the cluster at birth; the ratio between the initial and present mass in stars can therefore be derived. Assuming a star formation efficiency of 50%, the observed Na-O anti-correlations imply that GCs were at least 10-20 times more massive at birth, a conclusion that is in qualitative agreement with previous work. These factors are lower limits because any mass-loss mechanism that removes first- and second-generation stars equally will leave f{sub p} unchanged. The mass dependence of f{sub p} probably arises because lower mass GCs are unable to retain all of the AGB ejecta from the first stellar generation. Recent observations of elemental abundances in intermediate-age Large Magellanic Cloud clusters are re-interpreted and shown to be consistent with this basic scenario. The small scatter in f{sub p} at fixed GC mass argues strongly that the process responsible for the large mass loss is internal to GCs. A satisfactory explanation of these trends is currently lacking.« less

Snapshot Survey of the Globular Cluster Populations of Isolated Early Type Galaxies

NASA Astrophysics Data System (ADS)

Gregg, Michael

2017-08-01

We propose WFC3/UVIS snapshot observations of a sample of 75 isolated early type galaxiesresiding in cosmic voids or extremely low density regions. The primary aim is to usetheir globular cluster populations to reconstruct their evolutionary history, revealingif, how, and why void ellipticals differ from cluster ellipticals. The galaxies span arange of luminosities, providing a varied sample for comparison with the well-documentedglobular cluster populations in denser environments. This proposed WFC3 study of isolatedearly type galaxies breaks new ground by targeting a sample which has thus far receivedlittle attention, and, significantly, this will be the first such study with HST.Characterizing early type galaxies in voids and their GC systems promises to increase ourunderstanding of galaxy formation and evolution of galaxies in general because isolatedobjects are the best approximation to a control sample that we have for understanding theinfluence of environment on formation and evolution. Whether these isolated objects turnout to be identical to or distinct from counterparts in other regions of the Universe,they will supply insight into the formation and evolution of all galaxies. Parallel ACSimaging will help to characterize the near field environments of the sample.

A dynamic T cell–limited checkpoint regulates affinity-dependent B cell entry into the germinal center

PubMed Central

Schwickert, Tanja A.; Victora, Gabriel D.; Fooksman, David R.; Kamphorst, Alice O.; Mugnier, Monica R.; Gitlin, Alexander D.; Dustin, Michael L.

2011-01-01

The germinal center (GC) reaction is essential for the generation of the somatically hypermutated, high-affinity antibodies that mediate adaptive immunity. Entry into the GC is limited to a small number of B cell clones; however, the process by which this limited number of clones is selected is unclear. In this study, we demonstrate that low-affinity B cells intrinsically capable of seeding a GC reaction fail to expand and become activated in the presence of higher-affinity B cells even before GC coalescence. Live multiphoton imaging shows that selection is based on the amount of peptide–major histocompatibility complex (pMHC) presented to cognate T cells within clusters of responding B and T cells at the T–B border. We propose a model in which T cell help is restricted to the B cells with the highest amounts of pMHC, thus allowing for a dynamic affinity threshold to be imposed on antigen-binding B cells. PMID:21576382

Comparative Study of IS6110 Restriction Fragment Length Polymorphism and Variable-Number Tandem-Repeat Typing of Mycobacterium tuberculosis Isolates in the Netherlands, Based on a 5-Year Nationwide Survey

PubMed Central

de Beer, Jessica L.; van Ingen, Jakko; de Vries, Gerard; Erkens, Connie; Sebek, Maruschka; Mulder, Arnout; Sloot, Rosa; van den Brandt, Anne-Marie; Enaimi, Mimount; Kremer, Kristin; Supply, Philip

2013-01-01

In order to switch from IS6110 and polymorphic GC-rich repetitive sequence (PGRS) restriction fragment length polymorphism (RFLP) to 24-locus variable-number tandem-repeat (VNTR) typing of Mycobacterium tuberculosis complex isolates in the national tuberculosis control program in The Netherlands, a detailed evaluation on discriminatory power and agreement with findings in a cluster investigation was performed on 3,975 tuberculosis cases during the period of 2004 to 2008. The level of discrimination of the two typing methods did not differ substantially: RFLP typing yielded 2,733 distinct patterns compared to 2,607 in VNTR typing. The global concordance, defined as isolates labeled unique or identically distributed in clusters by both methods, amounted to 78.5% (n = 3,123). Of the remaining 855 cases, 12% (n = 479) of the cases were clustered only by VNTR, 7.7% (n = 305) only by RFLP typing, and 1.8% (n = 71) revealed different cluster compositions in the two approaches. A cluster investigation was performed for 87% (n = 1,462) of the cases clustered by RFLP. For the 740 cases with confirmed or presumed epidemiological links, 92% were concordant with VNTR typing. In contrast, only 64% of the 722 cases without an epidemiological link but clustered by RFLP typing were also clustered by VNTR typing. We conclude that VNTR typing has a discriminatory power equal to IS6110 RFLP typing but is in better agreement with findings in a cluster investigation performed on an RFLP-clustering-based cluster investigation. Both aspects make VNTR typing a suitable method for tuberculosis surveillance systems. PMID:23363841

Globular cluster formation and evolution in the context of cosmological galaxy assembly: open questions

NASA Astrophysics Data System (ADS)

Forbes, Duncan A.; Bastian, Nate; Gieles, Mark; Crain, Robert A.; Kruijssen, J. M. Diederik; Larsen, Søren S.; Ploeckinger, Sylvia; Agertz, Oscar; Trenti, Michele; Ferguson, Annette M. N.; Pfeffer, Joel; Gnedin, Oleg Y.

2018-02-01

We discuss some of the key open questions regarding the formation and evolution of globular clusters (GCs) during galaxy formation and assembly within a cosmological framework. The current state of the art for both observations and simulations is described, and we briefly mention directions for future research. The oldest GCs have ages greater than or equal to 12.5 Gyr and formed around the time of reionization. Resolved colour-magnitude diagrams of Milky Way GCs and direct imaging of lensed proto-GCs at z˜6 with the James Webb Space Telescope (JWST) promise further insight. GCs are known to host multiple populations of stars with variations in their chemical abundances. Recently, such multiple populations have been detected in ˜2 Gyr old compact, massive star clusters. This suggests a common, single pathway for the formation of GCs at high and low redshift. The shape of the initial mass function for GCs remains unknown; however, for massive galaxies a power-law mass function is favoured. Significant progress has been made recently modelling GC formation in the context of galaxy formation, with success in reproducing many of the observed GC-galaxy scaling relations.

Globular cluster formation and evolution in the context of cosmological galaxy assembly: open questions.

PubMed

Forbes, Duncan A; Bastian, Nate; Gieles, Mark; Crain, Robert A; Kruijssen, J M Diederik; Larsen, Søren S; Ploeckinger, Sylvia; Agertz, Oscar; Trenti, Michele; Ferguson, Annette M N; Pfeffer, Joel; Gnedin, Oleg Y

2018-02-01

We discuss some of the key open questions regarding the formation and evolution of globular clusters (GCs) during galaxy formation and assembly within a cosmological framework. The current state of the art for both observations and simulations is described, and we briefly mention directions for future research. The oldest GCs have ages greater than or equal to 12.5 Gyr and formed around the time of reionization. Resolved colour-magnitude diagrams of Milky Way GCs and direct imaging of lensed proto-GCs at z ∼6 with the James Webb Space Telescope (JWST) promise further insight. GCs are known to host multiple populations of stars with variations in their chemical abundances. Recently, such multiple populations have been detected in ∼2 Gyr old compact, massive star clusters. This suggests a common, single pathway for the formation of GCs at high and low redshift. The shape of the initial mass function for GCs remains unknown; however, for massive galaxies a power-law mass function is favoured. Significant progress has been made recently modelling GC formation in the context of galaxy formation, with success in reproducing many of the observed GC-galaxy scaling relations.

Globular cluster formation and evolution in the context of cosmological galaxy assembly: open questions

PubMed Central

Bastian, Nate; Gieles, Mark; Crain, Robert A.; Kruijssen, J. M. Diederik; Larsen, Søren S.; Ploeckinger, Sylvia; Agertz, Oscar; Trenti, Michele; Ferguson, Annette M. N.; Pfeffer, Joel; Gnedin, Oleg Y.

2018-01-01

We discuss some of the key open questions regarding the formation and evolution of globular clusters (GCs) during galaxy formation and assembly within a cosmological framework. The current state of the art for both observations and simulations is described, and we briefly mention directions for future research. The oldest GCs have ages greater than or equal to 12.5 Gyr and formed around the time of reionization. Resolved colour-magnitude diagrams of Milky Way GCs and direct imaging of lensed proto-GCs at z∼6 with the James Webb Space Telescope (JWST) promise further insight. GCs are known to host multiple populations of stars with variations in their chemical abundances. Recently, such multiple populations have been detected in ∼2 Gyr old compact, massive star clusters. This suggests a common, single pathway for the formation of GCs at high and low redshift. The shape of the initial mass function for GCs remains unknown; however, for massive galaxies a power-law mass function is favoured. Significant progress has been made recently modelling GC formation in the context of galaxy formation, with success in reproducing many of the observed GC-galaxy scaling relations. PMID:29507511

Beyond the brim of the hat: Kinematics of globular clusters out to large radii in the Sombrero galaxy

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dowell, Jessica L.; Rhode, Katherine L.; Bridges, Terry J.

2014-06-01

We have obtained radial velocity measurements for 51 new globular clusters around the Sombrero galaxy. These measurements were obtained using spectroscopic observations from the AAOmega spectrograph on the Anglo-Australian Telescope and the Hydra spectrograph at WIYN. Combining our own past measurements and velocity measurements obtained from the literature, we have constructed a large database of radial velocities that contains a total of 360 confirmed globular clusters. Previous studies' analyses of the kinematics and mass profile of the Sombrero globular cluster system have been constrained to the inner ∼9' (∼24 kpc or ∼5R{sub e} ), but our new measurements have increasedmore » the radial coverage of the data, allowing us to determine the kinematic properties of M104 out to ∼15' (∼41 kpc or ∼9R{sub e} ). We use our set of radial velocities to study the GC system kinematics and to determine the mass profile and V-band mass-to-light profile of the galaxy. We find that M/L{sub V} increases from 4.5 at the center to a value of 20.9 at 41 kpc (∼9R{sub e} or 15'), which implies that the dark matter halo extends to the edge of our available data set. We compare our mass profile at 20 kpc (∼4R{sub e} or ∼7.'4) to the mass computed from X-ray data and find good agreement. We also use our data to look for rotation in the globular cluster system as a whole, as well as in the red and blue subpopulations. We find no evidence for significant rotation in any of these samples.« less

The Ages of 55 Globular Clusters as Determined Using an Improved \\Delta V^HB_TO Method along with Color-Magnitude Diagram Constraints, and Their Implications for Broader Issues

NASA Astrophysics Data System (ADS)

VandenBerg, Don A.; Brogaard, K.; Leaman, R.; Casagrande, L.

2013-10-01

Ages have been derived for 55 globular clusters (GCs) for which Hubble Space Telescope Advanced Camera for Surveys photometry is publicly available. For most of them, the assumed distances are based on fits of theoretical zero-age horizontal-branch (ZAHB) loci to the lower bound of the observed distributions of HB stars, assuming reddenings from empirical dust maps and metallicities from the latest spectroscopic analyses. The age of the isochrone that provides the best fit to the stars in the vicinity of the turnoff (TO) is taken to be the best estimate of the cluster age. The morphology of isochrones between the TO and the beginning part of the subgiant branch (SGB) is shown to be nearly independent of age and chemical abundances. For well-defined color-magnitude diagrams (CMDs), the error bar arising just from the "fitting" of ZAHBs and isochrones is ≈ ± 0.25 Gyr, while that associated with distance and chemical abundance uncertainties is ~ ± 1.5-2 Gyr. The oldest GCs in our sample are predicted to have ages of ≈13.0 Gyr (subject to the aforementioned uncertainties). However, the main focus of this investigation is on relative GC ages. In conflict with recent findings based on the relative main-sequence fitting method, which have been studied in some detail and reconciled with our results, ages are found to vary from mean values of ≈12.5 Gyr at [Fe/H] <~ - 1.7 to ≈11 Gyr at [Fe/H] >~ -1. At intermediate metallicities, the age-metallicity relation (AMR) appears to be bifurcated: one branch apparently contains clusters with disk-like kinematics, whereas the other branch, which is displaced to lower [Fe/H] values by ≈0.6 dex at a fixed age, is populated by clusters with halo-type orbits. The dispersion in age about each component of the AMR is ~ ± 0.5 Gyr. There is no apparent dependence of age on Galactocentric distance (R G) nor is there a clear correlation of HB type with age. As previously discovered in the case of M3 and M13, subtle variations have been found in the slope of the SGB in the CMDs of other metal-poor ([Fe/H] <~ - 1.5) GCs. They have been tentatively attributed to cluster-to-cluster differences in the abundance of helium. Curiously, GCs that have relatively steep "M13-like" SGBs tend to be massive systems, located at small R G, that show the strongest evidence of in situ formation of multiple stellar populations. The clusters in the other group are typically low-mass systems (with 2-3 exceptions, including M3) that, at the present time, should not be able to retain the matter lost by mass-losing stars due either to the development of GC winds or to ram-pressure stripping by the halo interstellar medium. The apparent separation of the two groups in terms of their present-day gas retention properties is difficult to understand if all GCs were initially ~20 times their current masses. The lowest-mass systems, in particular, may have never been massive enough to retain enough gas to produce a significant population of second-generation stars. In this case, the observed light element abundance variations, which are characteristic of all GCs, were presumably present in the gas out of which the observed cluster stars formed.

Delineation of Stenotrophomonas maltophilia isolates from cystic fibrosis patients by fatty acid methyl ester profiles and matrix-assisted laser desorption/ionization time-of-flight mass spectra using hierarchical cluster analysis and principal component analysis.

PubMed

Vidigal, Pedrina Gonçalves; Mosel, Frank; Koehling, Hedda Luise; Mueller, Karl Dieter; Buer, Jan; Rath, Peter Michael; Steinmann, Joerg

2014-12-01

Stenotrophomonas maltophilia is an opportunist multidrug-resistant pathogen that causes a wide range of nosocomial infections. Various cystic fibrosis (CF) centres have reported an increasing prevalence of S. maltophilia colonization/infection among patients with this disease. The purpose of this study was to assess specific fingerprints of S. maltophilia isolates from CF patients (n = 71) by investigating fatty acid methyl esters (FAMEs) through gas chromatography (GC) and highly abundant proteins by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS), and to compare them with isolates obtained from intensive care unit (ICU) patients (n = 20) and the environment (n = 11). Principal component analysis (PCA) of GC-FAME patterns did not reveal a clustering corresponding to distinct CF, ICU or environmental types. Based on the peak area index, it was observed that S. maltophilia isolates from CF patients produced significantly higher amounts of fatty acids in comparison with ICU patients and the environmental isolates. Hierarchical cluster analysis (HCA) based on the MALDI-TOF MS peak profiles of S. maltophilia revealed the presence of five large clusters, suggesting a high phenotypic diversity. Although HCA of MALDI-TOF mass spectra did not result in distinct clusters predominantly composed of CF isolates, PCA revealed the presence of a distinct cluster composed of S. maltophilia isolates from CF patients. Our data suggest that S. maltophilia colonizing CF patients tend to modify not only their fatty acid patterns but also their protein patterns as a response to adaptation in the unfavourable environment of the CF lung. © 2014 The Authors.

Optically-Enhanced, Near-IR, Silver Cluster Emission Altered by Single Base Changes in the DNA Template

PubMed Central

Fan, Chaoyang; Story, Sandra P.; Sengupta, Bidisha; Sartin, Matthew; Hsiang, Jung-Cheng; Perry, Joseph W.

2011-01-01

Few-atom silver clusters harbored by DNA are promising fluorophores due to their high molecular brightness along with their long- and short-term photostability. Furthermore, their emission rate can be enhanced when co-illuminated with low-energy light that optically depopulates the fluorescence-limiting dark state. The photophysical basis for this effect is evaluated for two near infrared-emitting clusters. Clusters emitting at ~800 nm form with C3AC3AC3TC3A and C3AC3AC3GC3A and both exhibit a trap state with λmax ~ 840 nm and an absorption cross section of 5–6 × 10−16 cm2/molec that can be optically depopulated. Transient absorption spectra, complemented by fluorescence correlation spectroscopy studies, show that the dark state has an inherent lifetime of 3–4 μs and that absorption from this state is accompanied by photoinduced crossover back to the emissive manifold of states with an action cross section of ~2 × 10−18 cm2/molec. Relative to C3AC3AC3TC3A, C3AC3AC3GC3A produces a longer-lived trap state and permits more facile passage back to the emissive manifold. With the C3AC3AC3AC3G template, a spectrally distinct cluster forms having emission at ~900 nm and its trap state has a ~four-fold shorter lifetime. These studies of optically-gated fluorescence bolster the critical role of the nucleobases on both the formation and excited state dynamics of these highly emissive metallic clusters. PMID:21568292

Globular Cluster Orbits from HST Proper Motions: Constraining the Formation and Mass of the Milky Way Halo

NASA Astrophysics Data System (ADS)

Sohn, S. Tony; Van Der Marel, Roeland P.; Deason, Alis J.; Bellini, Andrea; Besla, Gurtina; Watkins, Laura

2016-06-01

The globular cluster (GC) system of the Milky Way (MW) provides important information on the MW's present structure and past evolution. GCs in the halo are particularly useful tracers; because of their long dynamical timescales, their orbits retain imprints of their origin or accretion history. Full 3D motions are required to calculate past orbits. While most GCs have known line of sight velocities, accurate proper motion (PM) measurements are currently available for only a few halo GCs. Our goal is to create the first high-quality PM database for halo GCs. We have identified suitable 1st-epoch data in the HST Archive for 20 halo GCs at 10-100 kpc from the Galactic Center. We are in the process of obtaining the necessary 2nd-epoch data to determine absolute PMs of the target GCs through our HST program GO-14235. We will use the same advanced astrometric techniques that allowed us to measure the PMs of M31 and Leo I. Previous studies of the halo GC system based on e.g., stellar populations, metallicities, RR Lyrae properties, and structural properties have revealed a dichotomy between old and young halo GCs. This may reflect distinct formation scenarios (in situ vs. accreted). Orbit calculations based on our PMs will directly test this. The PMs will also yield the best handle yet on the velocity anisotropy profile of any tracer population in the halo. This will resolve the mass-anisotropy degeneracy to provide an improved estimate of the MW mass, which is at present poorly known. In summary, our project will deliver the first accurate PMs for halo GCs, and will significantly increase our understanding of the formation, evolution, and mass of the MW.

A novel look at energy equipartition in globular clusters

NASA Astrophysics Data System (ADS)

Bianchini, P.; van de Ven, G.; Norris, M. A.; Schinnerer, E.; Varri, A. L.

2016-06-01

Two-body interactions play a major role in shaping the structural and dynamical properties of globular clusters (GCs) over their long-term evolution. In particular, GCs evolve towards a state of partial energy equipartition that induces a mass dependence in their kinematics. By using a set of Monte Carlo cluster simulations evolved in quasi-isolation, we show that the stellar mass dependence of the velocity dispersion σ(m) can be described by an exponential function σ2 ∝ exp (-m/meq), with the parameter meq quantifying the degree of partial energy equipartition of the systems. This simple parametrization successfully captures the behaviour of the velocity dispersion at lower as well as higher stellar masses, that is, the regime where the system is expected to approach full equipartition. We find a tight correlation between the degree of equipartition reached by a GC and its dynamical state, indicating that clusters that are more than about 20 core relaxation times old, have reached a maximum degree of equipartition. This equipartition-dynamical state relation can be used as a tool to characterize the relaxation condition of a cluster with a kinematic measure of the meq parameter. Vice versa, the mass dependence of the kinematics can be predicted knowing the relaxation time solely on the basis of photometric measurements. Moreover, any deviations from this tight relation could be used as a probe of a peculiar dynamical history of a cluster. Finally, our novel approach is important for the interpretation of state-of-the-art Hubble Space Telescope proper motion data, for which the mass dependence of kinematics can now be measured, and for the application of modelling techniques which take into consideration multimass components and mass segregation.

Tycho- Gaia Astrometric Solution Parallaxes and Proper Motions for Five Galactic Globular Clusters

DOE Office of Scientific and Technical Information (OSTI.GOV)

Watkins, Laura L.; Van der Marel, Roeland P., E-mail: lwatkins@stsci.edu

2017-04-20

We present a pilot study of Galactic globular cluster (GC) proper motion (PM) determinations using Gaia data. We search for GC stars in the Tycho- Gaia Astrometric Solution (TGAS) catalog from Gaia Data Release 1 (DR1), and identify five members of NGC 104 (47 Tucanae), one member of NGC 5272 (M3), five members of NGC 6121 (M4), seven members of NGC 6397, and two members of NGC 6656 (M22). By taking a weighted average of member stars, fully accounting for the correlations between parameters, we estimate the parallax (and, hence, distance) and PM of the GCs. This provides a homogeneousmore » PM study of multiple GCs based on an astrometric catalog with small and well-controlled systematic errors and yields random PM errors similar to existing measurements. Detailed comparison to the available Hubble Space Telescope ( HST ) measurements generally shows excellent agreement, validating the astrometric quality of both TGAS and HST . By contrast, comparison to ground-based measurements shows that some of those must have systematic errors exceeding the random errors. Our parallax estimates have uncertainties an order of magnitude larger than previous studies, but nevertheless imply distances consistent with previous estimates. By combining our PM measurements with literature positions, distances, and radial velocities, we measure Galactocentric space motions for the clusters and find that these also agree well with previous analyses. Our analysis provides a framework for determining more accurate distances and PMs of Galactic GCs using future Gaia data releases. This will provide crucial constraints on the near end of the cosmic distance ladder and provide accurate GC orbital histories.« less

Detailed abundances for a large sample of giant stars in the globular cluster 47 Tucanae (NGC 104)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cordero, M. J.; Pilachowski, C. A.; Johnson, C. I.

2014-01-01

47 Tuc is an ideal target to study chemical evolution and globular cluster (GC) formation in massive more metal-rich GCs, as it is the closest massive GC. We present chemical abundances for O, Na, Al, Si, Ca, Ti, Fe, Ni, La, and Eu in 164 red giant branch stars in the massive GC 47 Tuc using spectra obtained with both the Hydra multifiber spectrograph at the Blanco 4 m telescope and the FLAMES multiobject spectrograph at the Very Large Telescope. We find an average [Fe/H] = –0.79 ± 0.09 dex, consistent with literature values, as well as overabundances of alpha-elementsmore » ([α/Fe] ∼ 0.3 dex). The n-capture process elements indicate that 47 Tuc is r process-dominated ([Eu/La] = +0.24), and the light elements O, Na, and Al exhibit star-to-star variations. The Na-O anticorrelation, a signature typically seen in Galactic GCs, is present in 47 Tuc, and extends to include a small number of stars with [O/Fe] ∼ –0.5. Additionally, the [O/Na] ratios of our sample reveal that the cluster stars can be separated into three distinct populations. A Kolmogorov-Smirnov test demonstrates that the O-poor/Na-rich stars are more centrally concentrated than the O-rich/Na-poor stars. The observed number and radial distribution of 47 Tuc's stellar populations, as distinguished by their light element composition, agrees closely with the results obtained from photometric data. We do not find evidence supporting a strong Na-Al correlation in 47 Tuc, which is consistent with current models of asymptotic giant branch nucleosynthesis yields.« less

FTIR gas chromatographic analysis of perfumes

NASA Astrophysics Data System (ADS)

Diederich, H.; Stout, Phillip J.; Hill, Stephen L.; Krishnan, K.

1992-03-01

Perfumes, natural or synthetic, are complex mixtures consisting of numerous components. Gas chromatography (GC) and gas chromatography-mass spectrometry (GC-MS) techniques have been extensively utilized for the analysis of perfumes and essential oils. A limited number of perfume samples have also been analyzed by FT-IR gas chromatographic (GC-FTIR) techniques. Most of the latter studies have been performed using the conventional light pipe (LP) based GC-FTIR systems. In recent years, cold-trapping (in a matrix or neat) GC-FTIR systems have become available. The cold-trapping systems are capable of sub-nanogram sensitivities. In this paper, comparison data between the LP and the neat cold-trapping GC- FTIR systems is presented. The neat cold-trapping interface is known as Tracer. The results of GC-FTIR analysis of some commercial perfumes is also presented. For comparison of LP and Tracer GC-FTIR systems, a reference (synthetic) mixture containing 16 major and numerous minor constituents was used. The components of the mixture are the compounds commonly encountered in commercial perfumes. The GC-FTIR spectra of the reference mixture was obtained under identical chromatographic conditions from an LP and a Tracer system. A comparison of the two sets of data thus generated do indeed show the enhanced sensitivity level of the Tracer system. The comparison also shows that some of the major components detected by the Tracer system were absent from the LP data. Closer examination reveals that these compounds undergo thermal decomposition on contact with the hot gold surface that is part of the LP system. GC-FTIR data were obtained for three commercial perfume samples. The major components of these samples could easily be identified by spectra search against a digitized spectral library created using the Tracer data from the reference mixture.

[The gene pool of Belgorod oblast population: study of biochemical gene markers in populations of Ukraine and Belarus and the position of the Belgorod population in the Eastern Slavic gene pool system].

PubMed

Lependina, I N; Churnosov, M I; Artamentova, L A; Ishchuk, M A; Tegako, O V; Balanovskaia, E V

2008-04-01

The characteristics of the gene pools of indigenous populations of Ukraine and Belarus have been studied using 28 alleles of 10 loci of biochemical gene markers (HP, GC, TF, PI, C'3, ACP1, GLO1, PGM1, ESD, and 6-PGD). The gene pools of the Russian and Ukrainian indigenous populations of Belgorod oblast (Russia) and the indigenous populations of Ukraine and Belarus have been compared. Cluster analysis, multidimensional scaling, and factor analysis of the obtained data have been used to determine the position of the Belgorod population gene pool in the Eastern Slavic gene pool system.

HST Proper Motions of Distant Globular Clusters: Constraining the Formation & Mass of the Milky Way

NASA Astrophysics Data System (ADS)

Sohn, S. Tony; van der Marel, Roeland P.; Deason, Alis; Bellini, Andrea; Besla, Gurtina; Watkins, Laura

2018-04-01

Proper motions (PMs) are required to calculate accurate orbits of globular clusters (GCs) in the Milky Way (MW) halo. We present our HST program to create a PM database for 20 GCs at distances of R GC = 10-100 kpc. Targets are discussed along with PM measurement methods. We also describe how our PM results can be used for Gaia as an external check, and discuss the synergy between HST and Gaia as astrometric instruments in the coming years.

Upon the opportunity to apply ART2 Neural Network for clusterization of biodiesel fuels

NASA Astrophysics Data System (ADS)

Petkov, T.; Mustafa, Z.; Sotirov, S.; Milina, R.; Moskovkina, M.

2016-03-01

A chemometric approach using artificial neural network for clusterization of biodiesels was developed. It is based on artificial ART2 neural network. Gas chromatography (GC) and Gas Chromatography - mass spectrometry (GC-MS) were used for quantitative and qualitative analysis of biodiesels, produced from different feedstocks, and FAME (fatty acid methyl esters) profiles were determined. Totally 96 analytical results for 7 different classes of biofuel plants: sunflower, rapeseed, corn, soybean, palm, peanut, "unknown" were used as objects. The analysis of biodiesels showed the content of five major FAME (C16:0, C18:0, C18:1, C18:2, C18:3) and those components were used like inputs in the model. After training with 6 samples, for which the origin was known, ANN was verified and tested with ninety "unknown" samples. The present research demonstrated the successful application of neural network for recognition of biodiesels according to their feedstock which give information upon their properties and handling.

Genome sequence of a diabetes-prone rodent reveals a mutation hotspot around the ParaHox gene cluster.

PubMed

Hargreaves, Adam D; Zhou, Long; Christensen, Josef; Marlétaz, Ferdinand; Liu, Shiping; Li, Fang; Jansen, Peter Gildsig; Spiga, Enrico; Hansen, Matilde Thye; Pedersen, Signe Vendelbo Horn; Biswas, Shameek; Serikawa, Kyle; Fox, Brian A; Taylor, William R; Mulley, John Frederick; Zhang, Guojie; Heller, R Scott; Holland, Peter W H

2017-07-18

The sand rat Psammomys obesus is a gerbil species native to deserts of North Africa and the Middle East, and is constrained in its ecology because high carbohydrate diets induce obesity and type II diabetes that, in extreme cases, can lead to pancreatic failure and death. We report the sequencing of the sand rat genome and discovery of an unusual, extensive, and mutationally biased GC-rich genomic domain. This highly divergent genomic region encompasses several functionally essential genes, and spans the ParaHox cluster which includes the insulin-regulating homeobox gene Pdx1. The sequence of sand rat Pdx1 has been grossly affected by GC-biased mutation, leading to the highest divergence observed for this gene across the Bilateria. In addition to genomic insights into restricted caloric intake in a desert species, the discovery of a localized chromosomal region subject to elevated mutation suggests that mutational heterogeneity within genomes could influence the course of evolution.

Chemical diversity of the essential oils of twenty populations of Tanacetum polycephalum Sch. Bip. from Iran.

PubMed

Mojarrad, Mehran; Hosseini Sarghein, Siavash; Sonboli, Ali

2018-05-16

Chemical diversity of the essential oils of twenty wild populations of Tanacetum polycephalum Sch. Bip., was investigated. The aerial parts of T. polycephalum were collected at full flowering stage from West Azerbaijan Province of Iran, air-dried; hydrodistilled to produce essential oils. The essential oils were analyzed by GC-FID and GC-MS. A total of forty compounds were identified accounting for 96.4-99.9% of the total oils. The most principal compounds were cis-thujone (0-82.3%), trans-thujone (0-79.8%), camphor (1.3-75.0%), 1,8-cineole (4.5-43.3%), borneol (1.0-36.2%) and bornyl acetate (0-26.8%). Hierarchical cluster analysis based on the percentages (>0.5%) of the essential oils components was carried out to determine the chemical diversity among the populations studied. The cluster analysis resulted in the identification of four main chemotypes namely: 'camphor + 1,8-cineole', 'mixed', 'cis-thujone' and 'trans-thujone'.

Study of quantitative and qualitative variations in essential oils of Sicilian Rosmarinus officinalis L.

PubMed

Tuttolomondo, Teresa; Dugo, Giacomo; Ruberto, Giuseppe; Leto, Claudio; Napoli, Edoardo M; Cicero, Nicola; Gervasi, Teresa; Virga, Giuseppe; Leone, Raffaele; Licata, Mario; La Bella, Salvatore

2015-01-01

In this study the chemical characterisation of 10 Sicilian Rosmarinus officinalis L. biotypes essential oils is reported. The main goal of this work was to analyse the relationship between the essential oils yield and the geographical distribution of the species plants. The essential oils were analysed by GC-FID and GC-MS. Hierarchical cluster analysis and principal component analysis statistical methods were used to cluster biotypes according to the essential oils chemical composition. The essential oil yield ranged from 0.8 to 2.3 (v/w). In total 82 compounds have been identified, these represent 96.7-99.9% of the essential oil. The most represented compounds in the essential oils were 1.8-cineole, linalool, α-terpineol, verbenone, α-pinene, limonene, bornyl acetate and terpinolene. The results show that the essential oil yield of the 10 biotypes is affected by the environmental characteristics of the sampling sites while the chemical composition is linked to the genetic characteristics of different biotypes.

Automated clean-up, separation and detection of polycyclic aromatic hydrocarbons in particulate matter extracts from urban dust and diesel standard reference materials using a 2D-LC/2D-GC system.

PubMed

Ahmed, Trifa M; Lim, Hwanmi; Bergvall, Christoffer; Westerholm, Roger

2013-10-01

A multidimensional, on-line coupled liquid chromatographic/gas chromatographic system was developed for the quantification of polycyclic aromatic hydrocarbons (PAHs). A two-dimensional liquid chromatographic system (2D-liquid chromatography (LC)), with three columns having different selectivities, was connected on-line to a two-dimensional gas chromatographic system (2D-gas chromatography (GC)). Samples were cleaned up by combining normal elution and column back-flush of the LC columns to selectively remove matrix constituents and isolate well-defined, PAH enriched fractions. Using this system, the sequential removal of polar, mono/diaromatic, olefinic and alkane compounds from crude extracts was achieved. The LC/GC coupling was performed using a fused silica transfer line into a programmable temperature vaporizer (PTV) GC injector. Using the PTV in the solvent vent mode, excess solvent was removed and the enriched PAH sample extract was injected into the GC. The 2D-GC setup consisted of two capillary columns with different stationary phase selectivities. Heart-cutting of selected PAH compounds in the first GC column (first dimension) and transfer of these to the second GC column (second dimension) increased the baseline resolutions of closely eluting PAHs. The on-line system was validated using the standard reference materials SRM 1649a (urban dust) and SRM 1975 (diesel particulate extract). The PAH concentrations measured were comparable to the certified values and the fully automated LC/GC system performed the clean-up, separation and detection of PAHs in 16 extracts in less than 24 h. The multidimensional, on-line 2D-LC/2D-GC system eliminated manual handling of the sample extracts and minimised the risk of sample loss and contamination, while increasing accuracy and precision.

VizieR Online Data Catalog: 5 Galactic GC proper motions from Gaia DR1 (Watkins+, 2017)

NASA Astrophysics Data System (ADS)

Watkins, L. L.; van der Marel, R. P.

2017-11-01

We present a pilot study of Galactic globular cluster (GC) proper motion (PM) determinations using Gaia data. We search for GC stars in the Tycho-Gaia Astrometric Solution (TGAS) catalog from Gaia Data Release 1 (DR1), and identify five members of NGC 104 (47 Tucanae), one member of NGC 5272 (M3), five members of NGC 6121 (M4), seven members of NGC 6397, and two members of NGC 6656 (M22). By taking a weighted average of member stars, fully accounting for the correlations between parameters, we estimate the parallax (and, hence, distance) and PM of the GCs. This provides a homogeneous PM study of multiple GCs based on an astrometric catalog with small and well-controlled systematic errors and yields random PM errors similar to existing measurements. Detailed comparison to the available Hubble Space Telescope (HST) measurements generally shows excellent agreement, validating the astrometric quality of both TGAS and HST. By contrast, comparison to ground-based measurements shows that some of those must have systematic errors exceeding the random errors. Our parallax estimates have uncertainties an order of magnitude larger than previous studies, but nevertheless imply distances consistent with previous estimates. By combining our PM measurements with literature positions, distances, and radial velocities, we measure Galactocentric space motions for the clusters and find that these also agree well with previous analyses. Our analysis provides a framework for determining more accurate distances and PMs of Galactic GCs using future Gaia data releases. This will provide crucial constraints on the near end of the cosmic distance ladder and provide accurate GC orbital histories. (4 data files).

An Ultradeep Chandra Catalog of X-Ray Point Sources in the Galactic Center Star Cluster

NASA Astrophysics Data System (ADS)

Zhu, Zhenlin; Li, Zhiyuan; Morris, Mark R.

2018-04-01

We present an updated catalog of X-ray point sources in the inner 500″ (∼20 pc) of the Galactic center (GC), where the nuclear star cluster (NSC) stands, based on a total of ∼4.5 Ms of Chandra observations taken from 1999 September to 2013 April. This ultradeep data set offers unprecedented sensitivity for detecting X-ray sources in the GC, down to an intrinsic 2–10 keV luminosity of 1.0 × 1031 erg s‑1. A total of 3619 sources are detected in the 2–8 keV band, among which ∼3500 are probable GC sources and ∼1300 are new identifications. The GC sources collectively account for ∼20% of the total 2–8 keV flux from the inner 250″ region where detection sensitivity is the greatest. Taking advantage of this unprecedented sample of faint X-ray sources that primarily traces the old stellar populations in the NSC, we revisit global source properties, including long-term variability, cumulative spectra, luminosity function, and spatial distribution. Based on the equivalent width and relative strength of the iron lines, we suggest that in addition to the arguably predominant population of magnetic cataclysmic variables (CVs), nonmagnetic CVs contribute substantially to the detected sources, especially in the lower-luminosity group. On the other hand, the X-ray sources have a radial distribution closely following the stellar mass distribution in the NSC, but much flatter than that of the known X-ray transients, which are presumably low-mass X-ray binaries (LMXBs) caught in outburst. This, together with the very modest long-term variability of the detected sources, strongly suggests that quiescent LMXBs are a minor (less than a few percent) population.

PRIMORDIAL r-PROCESS DISPERSION IN METAL-POOR GLOBULAR CLUSTERS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Roederer, Ian U., E-mail: iur@obs.carnegiescience.edu

Heavy elements, those produced by neutron-capture reactions, have traditionally shown no star-to-star dispersion in all but a handful of metal-poor globular clusters (GCs). Recent detections of low [Pb/Eu] ratios or upper limits in several metal-poor GCs indicate that the heavy elements in these GCs were produced exclusively by an r-process. Re-examining GC heavy element abundances from the literature, we find unmistakable correlations between the [La/Fe] and [Eu/Fe] ratios in four metal-poor GCs (M5, M15, M92, and NGC 3201), only two of which were known previously. This indicates that the total r-process abundances vary from star to star (by factors ofmore » 2-6) relative to Fe within each GC. We also identify potential dispersion in two other GCs (M3 and M13). Several GCs (M12, M80, and NGC 6752) show no evidence of r-process dispersion. The r-process dispersion is not correlated with the well-known light element dispersion, indicating that it was present in the gas throughout the duration of star formation. The observations available at present suggest that star-to-star r-process dispersion within metal-poor GCs may be a common but not ubiquitous phenomenon that is neither predicted by nor accounted for in current models of GC formation and evolution.« less

Analysis of chemical signals in red fire ants by gas chromatography and pattern recognition techniques

USDA-ARS?s Scientific Manuscript database

The combination of gas chromatography and pattern recognition (GC/PR) analysis is a powerful tool for investigating complicated biological problems. Clustering, mapping, discriminant development, etc. are necessary to analyze realistically large chromatographic data sets and to seek meaningful relat...

Peak clustering in two-dimensional gas chromatography with mass spectrometric detection based on theoretical calculation of two-dimensional peak shapes: the 2DAid approach.

PubMed

van Stee, Leo L P; Brinkman, Udo A Th

2011-10-28

A method is presented to facilitate the non-target analysis of data obtained in temperature-programmed comprehensive two-dimensional (2D) gas chromatography coupled to time-of-flight mass spectrometry (GC×GC-ToF-MS). One main difficulty of GC×GC data analysis is that each peak is usually modulated several times and therefore appears as a series of peaks (or peaklets) in the one-dimensionally recorded data. The proposed method, 2DAid, uses basic chromatographic laws to calculate the theoretical shape of a 2D peak (a cluster of peaklets originating from the same analyte) in order to define the area in which the peaklets of each individual compound can be expected to show up. Based on analyte-identity information obtained by means of mass spectral library searching, the individual peaklets are then combined into a single 2D peak. The method is applied, amongst others, to a complex mixture containing 362 analytes. It is demonstrated that the 2D peak shapes can be accurately predicted and that clustering and further processing can reduce the final peak list to a manageable size. Copyright © 2011 Elsevier B.V. All rights reserved.

Are Pericentric Inversions Reorganizing Wedge Shell Genomes?

PubMed Central

García-Souto, Daniel; Pérez-García, Concepción

2017-01-01

Wedge shells belonging to the Donacidae family are the dominant bivalves in exposed beaches in almost all areas of the world. Typically, two or more sympatric species of wedge shells differentially occupy intertidal, sublittoral, and offshore coastal waters in any given locality. A molecular cytogenetic analysis of two sympatric and closely related wedge shell species, Donax trunculus and Donax vittatus, was performed. Results showed that the karyotypes of these two species were both strikingly different and closely alike; whilst metacentric and submetacentric chromosome pairs were the main components of the karyotype of D. trunculus, 10–11 of the 19 chromosome pairs were telocentric in D. vittatus, most likely as a result of different pericentric inversions. GC-rich heterochromatic bands were present in both species. Furthermore, they showed coincidental 45S ribosomal RNA (rRNA), 5S rRNA and H3 histone gene clusters at conserved chromosomal locations, although D. trunculus had an additional 45S rDNA cluster. Intraspecific pericentric inversions were also detected in both D. trunculus and D. vittatus. The close genetic similarity of these two species together with the high degree of conservation of the 45S rRNA, 5S rRNA and H3 histone gene clusters, and GC-rich heterochromatic bands indicate that pericentric inversions contribute to the karyotype divergence in wedge shells. PMID:29215567

DOE Office of Scientific and Technical Information (OSTI.GOV)

Burkert, Andreas; Tremaine, Scott, E-mail: burkert@usm.lmu.d, E-mail: tremaine@ias.ed

Elliptical, lenticular, and early-type spiral galaxies show a remarkably tight power-law correlation between the mass M {sub .} of their central supermassive black hole (SMBH) and the number N {sub GC} of globular clusters (GCs): M{sub .} = m {sub ./*} x N {sup 1.08{+-}0.04} {sub GC} with m{sub ./*} = 1.7 x 10{sup 5} M{sub sun}. Thus, to a good approximation the SMBH mass is the same as the total mass of the GCs. Based on a limited sample of 13 galaxies, this relation appears to be a better predictor of SMBH mass (rms scatter 0.2 dex) than themore » M{sub .}-{sigma} relation between SMBH mass and velocity dispersion {sigma}. The small scatter reflects the fact that galaxies with high GC specific frequency S{sub N} tend to harbor SMBHs that are more massive than expected from the M{sub .}-{sigma} relation.« less

New Halo Stars of the Galactic Globular Clusters M3 and M13 in the LAMOST DR1 Catalog

NASA Astrophysics Data System (ADS)

Navin, Colin A.; Martell, Sarah L.; Zucker, Daniel B.

2016-10-01

M3 and M13 are Galactic globular clusters with previous reports of surrounding stellar halos. We present the results of a search for members and extratidal cluster halo stars within and outside of the tidal radius of these clusters in the LAMOST Data Release 1. We find seven candidate cluster members (inside the tidal radius) of both M3 and M13, respectively. In M3 we also identify eight candidate extratidal cluster halo stars at distances up to ˜9.8 times the tidal radius, and in M13 we identify 12 candidate extratidal cluster halo stars at distances up to ˜13.8 times the tidal radius. These results support previous indications that both M3 and M13 are surrounded by extended stellar halos, and we find that the GC destruction rates corresponding to the observed mass loss are generally significantly higher than theoretical studies predict.

Self-similar hierarchical energetics in the ICM of massive galaxy clusters

NASA Astrophysics Data System (ADS)

Miniati, Francesco; Beresnyak, Andrey

Massive galaxy clusters (GC) are filled with a hot, turbulent and magnetised intra-cluster medium (ICM). They are still forming under the action of gravitational instability, which drives supersonic mass accretion flows. These partially dissipate into heat through a complex network of large scale shocks, and partly excite giant turbulent eddies and cascade. Turbulence dissipation not only contributes to heating of the ICM but also amplifies magnetic energy by way of dynamo action. The pattern of gravitational energy turning into kinetic, thermal, turbulent and magnetic is a fundamental feature of GC hydrodynamics but quantitative modelling has remained a challenge. In this contribution we present results from a recent high resolution, fully cosmological numerical simulation of a massive Coma-like galaxy cluster in which the time dependent turbulent motions of the ICM are resolved (Miniati 2014) and their statistical properties are quantified for the first time (Miniati 2015, Beresnyak & Miniati 2015). We combine these results with independent state-of-the art numerical simulations of MHD turbulence (Beresnyak 2012), which shows that in the nonlinear regime of turbulent dynamo (for magnetic Prandtl numbers>~ 1) the growth rate of the magnetic energy corresponds to a fraction CE ~= 4 - 5 × 10-2 of the turbulent dissipation rate. We thus determine without adjustable parameters the thermal, turbulent and magnetic history of giant GC (Miniati & Beresnyak 2015). We find that the energy components of the ICM are ordered according to a permanent hierarchy, in which the sonic Mach number at the turbulent injection scale is of order unity, the beta of the plasma of order forty and the ratio of turbulent injection scale to Alfvén scale is of order one hundred. These dimensionless numbers remain virtually unaltered throughout the cluster's history, despite evolution of each individual component and the drive towards equipartition of the turbulent dynamo, thus revealing a new type of self-similarity in cosmology. Their specific values, while consistent with current data, indicate that thermal energy dominates the ICM energetics and the turbulent dynamo is always far from saturation, unlike the condition in other familiar astrophysical fluids (stars, interstellar medium of galaxies, compact objects, etc.). In addition, they have important physical meaning as their specific values encodes information about the efficiency of turbulent heating (the fraction of ICM thermal energy produced by turbulent dissipation) and the efficiency of dynamo action in the ICM (CE ).

Origin Discrimination of Osmanthus fragrans var. thunbergii Flowers using GC-MS and UPLC-PDA Combined with Multivariable Analysis Methods.

PubMed

Zhou, Fei; Zhao, Yajing; Peng, Jiyu; Jiang, Yirong; Li, Maiquan; Jiang, Yuan; Lu, Baiyi

2017-07-01

Osmanthus fragrans flowers are used as folk medicine and additives for teas, beverages and foods. The metabolites of O. fragrans flowers from different geographical origins were inconsistent in some extent. Chromatography and mass spectrometry combined with multivariable analysis methods provides an approach for discriminating the origin of O. fragrans flowers. To discriminate the Osmanthus fragrans var. thunbergii flowers from different origins with the identified metabolites. GC-MS and UPLC-PDA were conducted to analyse the metabolites in O. fragrans var. thunbergii flowers (in total 150 samples). Principal component analysis (PCA), soft independent modelling of class analogy analysis (SIMCA) and random forest (RF) analysis were applied to group the GC-MS and UPLC-PDA data. GC-MS identified 32 compounds common to all samples while UPLC-PDA/QTOF-MS identified 16 common compounds. PCA of the UPLC-PDA data generated a better clustering than PCA of the GC-MS data. Ten metabolites (six from GC-MS and four from UPLC-PDA) were selected as effective compounds for discrimination by PCA loadings. SIMCA and RF analysis were used to build classification models, and the RF model, based on the four effective compounds (caffeic acid derivative, acteoside, ligustroside and compound 15), yielded better results with the classification rate of 100% in the calibration set and 97.8% in the prediction set. GC-MS and UPLC-PDA combined with multivariable analysis methods can discriminate the origin of Osmanthus fragrans var. thunbergii flowers. Copyright © 2017 John Wiley & Sons, Ltd. Copyright © 2017 John Wiley & Sons, Ltd.

Physical conditions, dynamics, and mass distribution in the center of the Galaxy

NASA Technical Reports Server (NTRS)

Genzel, R.; Townes, C. H.

1987-01-01

Recent observations and theoretical models of the Galactic center (GC) are reviewed. An overview of phenomena seen in the GC is given, including the stellar cluster, radio continuum emission and interstellar clouds, the Sgr A complex, and X-ray and gamma emission. Also discussed are the energetics and physical conditions in the central 4 pc (star burst or central source?); the circumnuclear ring, ionized streamers, and relativistic and hot gas in the cavity; the mass distribution and the possibility of a massive black hole, and the central 0.1 pc (Sgr A and IRS 16). Diagrams, graphs, photographs, and tables of numerical data are provided.

Gravitational wave sources from inspiralling globular clusters in the Galactic Centre and similar environments

NASA Astrophysics Data System (ADS)

Arca-Sedda, Manuel; Gualandris, Alessia

2018-07-01

We model the inspiral of globular clusters (GCs) towards a galactic nucleus harbouring a supermassive black hole (SMBH), a leading scenario for the formation of nuclear star clusters. We consider the case of GCs containing either an intermediate-mass black hole (IMBH) or a population of stellar-mass black holes (BHs), and study the formation of gravitational wave (GW) sources. We perform direct summation N-body simulations of the infall of GCs with different orbital eccentricities in the live background of a galaxy with either a shallow or steep density profile. We find that the GC acts as an efficient carrier for the IMBH, facilitating the formation of a bound pair. The hardening and evolution of the binary depends sensitively on the galaxy's density profile. If the host galaxy has a shallow profile, the hardening is too slow to allow for coalescence within a Hubble time, unless the initial cluster orbit is highly eccentric. If the galaxy hosts a nuclear star cluster, the hardening leads to coalescence by emission of GWs within 3-4 Gyr. In this case, we find an IMBH-SMBH merger rate of ΓIMBH-SMBH = 2.8 × 10-3 yr-1 Gpc3. If the GC hosts a population of stellar BHs, these are deposited close enough to the SMBH to form extreme mass ratio inspirals with a merger rate of ΓEMRI = 0.25 yr-1 Gpc3. Finally, the SMBH tidal field can boost the coalescence of stellar black hole binaries delivered from the infalling GCs. The merger rate for this merging channel is ΓBHB = 0.4-4 yr-1 Gpc3.

Molecular simulations of assembly of functionalized spherical nanoparticles

NASA Astrophysics Data System (ADS)

Seifpour, Arezou

Precise assembly of nanoparticles is crucial for creating spatially engineered materials that can be used for photonics, photovoltaic, and metamaterials applications. One way to control nanoparticle assembly is by functionalizing the nanoparticle with ligands, such as polymers, DNA, and proteins, that can manipulate the interactions between the nanoparticles in the medium the particles are placed in. This thesis research aims to design ligands to provide a new route to the programmable assembly of nanoparticles. We first investigate using Monte Carlo simulation the effect of copolymer ligands on nanoparticle assembly. We first study a single nanoparticle grafted with many copolymer chains to understand how monomer sequence (e.g. alternating ABAB, or diblock AxBx) and chemistry of the copolymers affect the grafted chain conformation at various particle diameters, grafting densities, copolymer chain lengths, and monomer-monomer interactions in an implicit small molecule solvent. We find that the size of the grafted chain varies non-monotonically with increasing blockiness of the monomer sequence for a small particle diameter. From this first study, we selected the two sequences with the most different chain conformations---alternating and diblock---and studied the effect of the sequence and a range of monomer chemistries of the copolymer on the characteristics of assembly of multiple copolymer-functionalized nanoparticles. We find that the alternating sequence produces nanoclusters that are relatively isotropic, whereas diblock sequence tends to form anisotropic structures that are smaller and more compact when the block closer to the surface is attractive and larger loosely held together clusters when the outer block is attractive. Next, we conduct molecular dynamics simulations to study the effect of DNA ligands on nanoparticle assembly. Specifically we investigate the effect of grafted DNA strand composition (e.g. G/C content, placement and sequence) and bidispersity in DNA strand lengths on the thermodynamics and structure of assembly of functionalized nanoparticles. We find that higher G/C content increases cluster dissociation temperature for smaller particles. Placement of G/C block inward along the strand decreases number of neighbors within the assembled cluster. Finally, increased bidispersity in DNA strand lengths leads a distribution of inter-particle distances in the assembled cluster.

Sodium abundances of AGB and RGB stars in Galactic globular clusters. II. Analysis and results of NGC 104, NGC 6121, and NGC 6809

NASA Astrophysics Data System (ADS)

Wang, Y.; Primas, F.; Charbonnel, C.; Van der Swaelmen, M.; Bono, G.; Chantereau, W.; Zhao, G.

2017-11-01

Aims: We investigate the Na abundance distribution of asymptotic giant branch (AGB) stars in Galactic globular clusters (GCs) and its possible dependence on GC global properties, especially age and metallicity. Methods: We analyze high-resolution spectra of a large sample of AGB and red giant branch (RGB) stars in the Galactic GCs NGC 104, NGC 6121, and NGC 6809 obtained with FLAMES/GIRAFFE at ESO/VLT, and determine their Na abundances. This is the first time that the AGB stars in NGC 6809 are targeted. Moreover, to investigate the dependence of AGB Na abundance dispersion on GC parameters, we compare the AGB [Na/H] distributions of a total of nine GCs, with five determined by ourselves with homogeneous method and four from literature, covering a wide range of GC parameters. Results: NGC 104 and NGC 6809 have comparable AGB and RGB Na abundance distributions revealed by the K-S test, while NGC 6121 shows a lack of very Na-rich AGB stars. By analyzing all nine GCs, we find that the Na abundances and multiple populations of AGB stars form complex picture. In some GCs, AGB stars have similar Na abundances and/or second-population fractions as their RGB counterparts, while some GCs do not have Na-rich second-population AGB stars, and various cases exist between the two extremes. In addition, the fitted relations between fractions of the AGB second population and GC global parameters show that the AGB second-population fraction slightly anticorrelates with GC central concentration, while no robust dependency can be confirmed with other GC parameters. Conclusions: Current data roughly support the prediction of the fast-rotating massive star (FRMS) scenario. However, considering the weak observational and theoretical trends where scatter and exceptions exist, the fraction of second-population AGB stars can be affected by more than one or two factors, and may even be a result of stochasticity. Based on observations made with ESO telescopes at the La Silla Paranal Observatory under programme ID 093.D-0818(A).Full Tables 3, 5, and 7 are only available at the CDS via anonymous ftp to http://cdsarc.u-strasbg.fr (http://130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/607/A135

The Draft Genome Sequence of Actinokineospora bangkokensis 44EHWT Reveals the Biosynthetic Pathway of the Antifungal Thailandin Compounds with Unusual Butylmalonyl-CoA Extender Units.

PubMed

Greule, Anja; Intra, Bungonsiri; Flemming, Stephan; Rommel, Marcel G E; Panbangred, Watanalai; Bechthold, Andreas

2016-11-23

We report the draft genome sequence of Actinokineospora bangkokensis 44EHW T , the producer of the antifungal polyene compounds, thailandins A and B. The sequence contains 7.45 Mb, 74.1% GC content and 35 putative gene clusters for the biosynthesis of secondary metabolites. There are three gene clusters encoding large polyketide synthases of type I. Annotation of the ORF functions and targeted gene disruption enabled us to identify the cluster for thailandin biosynthesis. We propose a plausible biosynthetic pathway for thailandin, where the unusual butylmalonyl-CoA extender unit is incorporated and results in an untypical side chain.

The development and testing of a volatile organics concentrator for use in monitoring Space Station water quality

NASA Technical Reports Server (NTRS)

Bodek, Itamar; Ehntholt, Daniel J.; Stolki, Thomas J.; Trabanino, Rudy; Hinsdale, Lloyd; Webb, Johanna; Sauer, Richard L.

1992-01-01

The Volatile Organics Concentrator (VOC) system, designed to attach to a gas chromatograph/mass spectrometer (GC/MS) for the analyses of volatile organic compounds in water on Space Station Freedom, is described. Organic volatiles are collected and concentrated in the VOC by means of two primary solid sorbent tubes and desorbed into the GC/MS system. The paper describes the results of testing the VOC breadboard using a GC/MS system. Evaluations performed on 39 organic compounds recovered from water samples were compared with data for these compounds using direct injection/GC/MS and purge and trap/GC/MS procedures. The results demonstrate that the VOC/GC/MS system's detection limits for the 39 compounds analyzed are comparable to those of the EPA Method 524.2, and for many compounds reaching a factor of 5 lower.

VizieR Online Data Catalog: NGC3115 & NGC1399 VEGAS-SSS globular clusters (Cantiello+, 2018)

NASA Astrophysics Data System (ADS)

Cantiello, M.; D'Abrusco, R.; Spavone, M.; Paolillo, M.; Capaccioli, M.; Limatola, L.; Grado, A.; Iodice, E.; Raimondo, G.; Napolitano, N.; Blakeslee, J. P.; Brocato, E.; Forbes, D. A.; Hilker, M.; Mieske, S.; Peletier, R.; van de Ven, G.; Schipani, P.

2017-11-01

Photometric catalogs for globular cluster (GC) candidates over the the 1 sq. degree area around NGC3115 and NGC1399 (ngc3115.dat and ngc1399.dat). The catalogues are based on u-, g- and i- band images from the VST elliptical galaxies survey (VEGAS). Aperture magnitudes, corrected for aperture correction are reported. We also provide the full catalogs of matched sources, which also include the matched background and foreground sources in the frames (ngc3115_full.dat and ngc1399_full.dat). (4 data files).

Molecular cloning and functional characterization of peptidoglycan recognition protein 6 in grass carp Ctenopharyngodon idella.

PubMed

Li, Jun Hua; Yu, Zhang Long; Xue, Na Na; Zou, Peng Fei; Hu, Jing Yu; Nie, P; Chang, Ming Xian

2014-02-01

Peptidoglycan recognition proteins (PGRPs) are pattern recognition molecules of innate immunity. In this study, a long-form PGRP, designated as gcPGRP6, was identified from grass carp Ctenopharyngodon idella. The deduced amino acid sequence of gcPGRP6 is composed of 464 residues with a conserved PGRP domain at the C-terminus. The gcPGRP6 gene consists of four exons and three introns, spacing approximately 2.7 kb of genomic sequence. Phylogenetic analysis demonstrated that gcPGRP6 is clustered closely with zebrafish PGLYRP6, and formed a long-type PGRP subfamily together with PGLYRP2 members identified in teleosts and mammals. Real-time PCR and Western blotting analyses revealed that gcPGRP6 is constitutively expressed in organs/tissues examined, and its expression was significantly induced in liver and intestine of grass carp in response to PGN stimulation and in CIK cells treated with lipoteichoic acid (LTA), polyinosinic polycytidylic acid (Poly I:C) and peptidoglycan (PGN). Immunofluorescence microscopy and Western blotting analyses revealed that gcPGRP6 is effectively secreted to the exterior of CIK cells. The over-expression of gcPGRP6 in CIK cells leads to the activation of NF-κB and the inhibition of intracellular bacterial growth. Moreover, cell lysates from CIK cells transfected with pTurbo-gcPGRP6-GFP plasmid display the binding activity towards Lys-type PGN from Staphylococcus aureus and DAP-type PGN from Bacillus subtilis. Furthermore, proinflammatory cytokine IL-2 and intracellular PGN receptor NOD2 had a significantly increased expression in CIK cells overexpressed with gcPGRP6. It is demonstrated that the PGRP6 in grass carp has a role in binding PGN, in inhibiting the growth of intracellular bacteria, and in activating NF-κB, as well as in regulating innate immune genes. Copyright © 2013 Elsevier Ltd. All rights reserved.

Childhood lead exposure and sexually transmitted infections: New evidence.

PubMed

Nelson, Erik J; Shacham, Enbal; Boutwell, Brian B; Rosenfeld, Richard; Schootman, Mario; Vaughn, Michael; Lewis, Roger

2015-11-01

The adverse health effects of lead exposure in children are well documented and include intellectual and behavioral maladies. Childhood lead exposure has also been linked to impulsive behaviors, which, in turn, are associated with a host of negative health outcomes including an increased risk for sexually transmitted infections (STI). The purpose of this study was to assess the association of lead exposure with STI rates across census tracts in St. Louis City, Missouri. Incident cases of gonorrhea and chlamydia (GC) during 2011 were identified from the Missouri Department of Health and Senior Services and aggregated by census tract. We also geocoded the home address of 59,645 children >72 months in age who had blood lead level tests performed in St. Louis City from 1996 to 2007. Traditional regression and Bayesian spatial models were used to determine the relationship between GC and lead exposure while accounting for confounders (condom and alcohol availability, crime, and an index of concentrated disadvantage). Incident GC rates were found to cluster across census tracts (Moran's I=0.13, p=0.006). After accounting for confounders and their spatial dependence, a linear relationship existed between lead exposure and GC incidence across census tracts, with higher GC rates occurring in the northern part of St. Louis City At the census-tract level, higher lead exposure is associated with higher STI rates. Visualizing these patterns through maps may help deliver targeted interventions to reduce geographic disparities in GC rates. Copyright © 2015 Elsevier Inc. All rights reserved.

Detection biomarkers of lung cancer using mini-GC-PID system integrated with micro GC column and micro pre-concentrator

PubMed Central

2014-01-01

The survival rate of lung cancer can be significantly improved by monitoring biomarkers in exhaled air that indicate diseases in early stage, so it is very important to develop micro analytical systems which can offer a fast, on-site, real-time detecting biomarkers in exhaled air. In this paper, a mini-gas chromatography (GC)-photo-ionization detector (PID) system integrated with a micro GC column and a micro pre-concentrator was developed for forming an inexpensive, fast, and non-invasive diagnostic tool for lung cancer. This system has very strong concentrate ability owing to its integrated micro pre-concentrator, which make the detection of trace components in exhaled air very easy. In addition, the integrated micro GC column can separate complex mixtures, which overcome low resolution and poor anti-interference ability of other instruments. The results indicated that the mini-GC-PID system can effectively separate and detect the biomarkers at parts-per-billion (ppb) level. PMID:25339856

Performance evaluation of a versatile multidimensional chromatographic preparative system based on three-dimensional gas chromatography and liquid chromatography-two-dimensional gas chromatography for the collection of volatile constituents.

PubMed

Pantò, Sebastiano; Sciarrone, Danilo; Maimone, Mariarosa; Ragonese, Carla; Giofrè, Salvatore; Donato, Paola; Farnetti, Sara; Mondello, Luigi

2015-10-23

The present research deals with the multi-collection of the most important sesquiterpene alcohols belonging to sandalwood essential oil, as reported by the international regulations: (Z)-α-santalol, (Z)-α-trans bergamotol, (Z)-β-santalol, epi-(Z)-β-santalol, α-bisabolol, (Z)-lanceol, and (Z)-nuciferol. A versatile multidimensional preparative system, based on the hyphenation of liquid and gas chromatography techniques, was operated in the LC-GC-GC-prep or GC-GC-GC-prep configuration, depending on the concentration to be collected from the sample, without any hardware or software modification. The system was equipped with a silica LC column in combination with polyethylene glycol-poly(5% diphenyl/95% dimethylsiloxane)-medium polarity ionic liquid or β-cyclodextrin based GC stationary phases. The GC-GC-GC-prep configuration was exploited for the collection of four components, by using a conventional split/splitless injector, while the LC-GC-GC-prep approach was applied for three low abundant components (<5%), in order to increase the quantity collected within a single run, by the LC injection of a high sample amount. All target compounds, whose determination is hampered by the unavailability of commercial standards, were collected at milligram levels and with a high degree of purity (>87%). Copyright © 2015 Elsevier B.V. All rights reserved.

Multiple populations in more metal-rich galactic globular clusters

NASA Astrophysics Data System (ADS)

Cordero, Maria J.

In this thesis we present chemical abundances for bright stars in the intermediate metallicity globular cluster (GC) M5, and the relatively metal-rich GCs M71 and 47 Tuc with the goal of improving the understanding of chemical evolution in the metallicity regime sampled by these three GCs. The first chapter presents a brief historical overview in light element abundance variations in globular clusters. In the second chapter we present the results obtained for 47 Tuc, the most-metal rich cluster of my sample. 47 Tuc is an ideal target to study chemical evolution and GC formation in massive more metal-rich GCs since it is the closest massive GC. Chemical abundances for O, Na, Al, Si, Ca, Ti, Fe, Ni, La, and Eu were determined for 164 red giant branch (RGB) stars in 47 Tuc using spectra obtained with both the Hydra multi-fiber spectrograph at the Blanco 4-m telescope and the FLAMES multi-object spectrograph at the ESO Very Large Telescope. The average [Fe/H]= --0.79+/-0.09 dex is consistent with literature values, as well as over-abundances of alpha-elements ([alpha/Fe] ~ 0.3 dex). The n-capture process elements indicate that 47 Tuc is r-process dominated ([Eu/La]=+0.24), and the light elements O, Na, and Al exhibit star-to-star variations. The Na-O anti-correlation, a signature typically seen in Galactic GCs, is present in 47 Tuc, and extends to include a small number of stars with [O/Fe] ~ --0.5. Additionally, the [O/Na] ratios of our sample reveal that the cluster stars can be separated into three distinct populations. A KS-test demonstrates that the O-poor/Na-rich stars are more centrally concentrated than the O-rich/Na-poor stars. The observed number and radial distribution of 47 Tuc's stellar populations, as distinguished by their light element composition, agrees closely with the results obtained from photometric data. We do not find evidence supporting a strong Na-Al correlation in 47 Tuc, which is consistent with current models of AGB nucleosynthesis yields. Aluminum is the heaviest light element displaying large star-to-star variations in Galactic GCs. This element may provide additional insight into the origin of the multiple populations and the nature of the first-generation stars responsible for chemical inhomogeneities. We found that, unlike more metal-poor GCs, 47 Tuc did not exhibit a strong Na-Al correlation, which motivates a careful study of the similar metallicity but less massive GC M71. In chapter 3, we present chemical abundances of O, Na, Al, and Fe for 33 giants in M71 using spectra obtained with the WIYN-Hydra spectrograph. Our spectroscopic analysis finds that, similar to 47 Tuc and in contrast with more metal-poor GCs, M71 stars do not exhibit a strong Na-Al correlation and span a relatively narrow range in [Al/Fe]. Furthermore, these data suggest that only a small fraction of stars (29%) have an [Na/Fe] ratio similar to halo stars at this metallicity, which is a characteristic reproduced by GC formation and evolution models. In the fourth chapter we present chemical abundances for a sample of 61 red giants in the intermediate-metallicity GC M5. The data were obtained using the Hydra multi-fiber positioner and bench spectrograph on the WIYN telescope. We find that our abundance ratios for Na, Al, Si, Ca, Ti, Fe, Ni, La, and Eu agree with published values for this cluster. The scatter seen in Fe-peak, alpha, and neutron-capture elements is consistent with typical spectroscopic errors. However, we identified a star modestly enhanced in La by performing a careful comparison of stellar spectra with similar atmospheric parameters. La-enhanced stars are rare in GCs. For instance, we have found only one such star in each of M5 and 47 Tuc. M5 red giants exhibit a strong Na-Al correlation, which is absent in M71 and 47 Tuc. Furthermore, M5 is at the metallicity regime where GCs seem to transition from small to large [Al/Fe] scatter. Interestingly, this metallicity regime also separates metal-poor from metal-rich Galactic GCs. In the fifth chapter we present radial distributions, population fractions, detailed examination of behavior of Al in more metal-rich GCs in the context of cluster chemical evolution, and, finally, a kinematical study of the GC M13 using spectra acquired with the WIYN-Hydra spectrograph. We find a rotational signal and a kinematical difference between the intermediate and extreme generations. Specifically, we find that the extreme O-depleted population, which is also more centrally concentrated than the primordial and intermediate populations, has the highest rotational amplitude. (Abstract shortened by UMI.)

Relative Age Difference Between the Metal-Poor Globular Clusters M53 and M92

NASA Astrophysics Data System (ADS)

Cho, Dong-Hwan; Sung, Hyun-Il; Lee, Sang-Gak; Yoon, Tae Seog

2016-10-01

CCD photometric observations of the globular cluster (GC), M53 (NGC 5024), are performed using the 1.8 m telescope at the Bohyunsan Optical Astronomy Observatory in Korea on the same nights (2002 April and 2003 May) as the observations of the GC M92 (NGC 6341) reported by Cho and Lee using the same instrumental setup. The data for M53 is reduced using the same method as used for M92 by Cho and Lee, including preprocessing, point-spread function fitting photometry, and standardization etc. Therefore, M53 and M92 are on the same photometric system defined by Landolt, and the photometry of M53 and M92 is tied together as closely as possible. After complete photometric reduction, the V versus B-V, V versus V-I, and V versus B-I color-magnitude diagrams (CMDs) of M53 are produced to derive the relative ages of M53 and M92 and derive the various characteristics of its CMDs in future analysis. From the present analysis, the relative ages of M53 and M92 are derived using the Δ(B-V) method reported by VandenBerg et al. The relative age of M53 is found to be 1.6 ± 0.85 Gyr younger than that of M92 if the absolute age of M92 is taken to be 14 Gyr. This relative age difference between M53 and M92 causes slight differences in the horizontal-branch morphology of these two GCs.

Special antitumor immune effects of laser immunotherapy with SWNT-GC

NASA Astrophysics Data System (ADS)

Zhou, Feifan; Song, Sheng; Chen, Wei R.

2014-02-01

In our previous work, we constructed a multifunction nano system SWNT-GC, which can synergize photothermal and immunological effects. To further improve the application of this system, we study the cytotoxicity of SWNT-GC and investigate the effects on malignant tumor therapy. Here, we selected the optimal concentration of GC and SWNTs for the stable SWNT-GC construction. No cytotoxicity was observed under the dose used in the experiments. Using mouse melanoma tumor model, Laser+SWNT-GC treatment resulted in a significant mice survival rate, there were no long-term survivors under other treatment. It is providing a promising treatment modality for the malignancy.

Dark Matter in Ultra-diffuse Galaxies in the Virgo Cluster from Their Globular Cluster Populations

NASA Astrophysics Data System (ADS)

Toloba, Elisa; Lim, Sungsoon; Peng, Eric; Sales, Laura V.; Guhathakurta, Puragra; Mihos, J. Christopher; Côté, Patrick; Boselli, Alessandro; Cuillandre, Jean-Charles; Ferrarese, Laura; Gwyn, Stephen; Lançon, Ariane; Muñoz, Roberto; Puzia, Thomas

2018-04-01

We present Keck/DEIMOS spectroscopy of globular clusters (GCs) around the ultra-diffuse galaxies (UDGs) VLSB‑B, VLSB‑D, and VCC615 located in the central regions of the Virgo cluster. We spectroscopically identify 4, 12, and 7 GC satellites of these UDGs, respectively. We find that the three UDGs have systemic velocities (V sys) consistent with being in the Virgo cluster, and that they span a wide range of velocity dispersions, from ∼16 to ∼47 km s‑1, and high dynamical mass-to-light ratios within the radius that contains half the number of GCs ({407}-407+916, {21}-11+15, {60}-38+65, respectively). VLSB‑D shows possible evidence for rotation along the stellar major axis and its V sys is consistent with that of the massive galaxy M84 and the center of the Virgo cluster itself. These findings, in addition to having a dynamically and spatially (∼1 kpc) off-centered nucleus and being extremely elongated, suggest that VLSB‑D could be tidally perturbed. On the contrary, VLSB‑B and VCC615 show no signs of tidal deformation. Whereas the dynamics of VLSB‑D suggest that it has a less massive dark matter halo than expected for its stellar mass, VLSB‑B and VCC615 are consistent with a ∼1012 M ⊙ dark matter halo. Although our samples of galaxies and GCs are small, these results suggest that UDGs may be a diverse population, with their low surface brightnesses being the result of very early formation, tidal disruption, or a combination of the two.

Candy from the 47 Tuc shop

NASA Astrophysics Data System (ADS)

Barr, Ewan; Possenti, Andrea; Johnston, Simon; Kramer, Michael; Burgay, Marta; Freire, Paulo; Eatough, Ralph; van Straten, Willem; Keane, Evan; Kerr, Matthew; Champion, David; Jameson, Andrew; Ng, Cherry; Tiburzi, Caterina; Flynn, Chris; Caleb, Manisha; Morello, Vincent

2014-04-01

Studies of the 23 MSPs in the globular cluster (GC) 47 Tucanae (47 Tuc) have provided a wealth of interesting science. Timing of these MSPs (all with periods between 2 and 8 ms) has enabled us to probe the environment and dynamics of the cluster in impressive detail and has allowed us to put constraints on the masses of several of the pulsars. However, previous studies of the cluster were limited by the hardware used. The AFB provided 1-bit digitisation and relatively coarse 88 us sampling. Through the use of the CASPSR backend, we will observe 47 Tuc and its 23 MSPs with unprecedented time resolution. For timing we will achieve almost two orders of magnitude better time resolution, allowing us to resolve out features in the profiles of several cluster pulsars, greatly improving their timing accuracy. For search purposes the CASPSR backend will provide a coherently dedispersed filterbank file at the cluster's dispersion measure. We will search this data using state-of-the-art GPU acceleration searching codes to hunt for compact binary systems. In tandem with timing and searching, we will perform real-time transient searching to hunt for fast radio bursts (FRBs). Through shadowing with the Molonglo telescope, we will be able to provide the best localisation, spectral index measurement and repetition limits for any detected FRB. This will provide us with much needed information for multi-wavelength follow-up and will give new insight into the origins of these mysterious events.

Candy from the 47 Tuc shop

NASA Astrophysics Data System (ADS)

Barr, Ewan; Possenti, Andrea; Johnston, Simon; Kramer, Michael; Burgay, Marta; Freire, Paulo; Eatough, Ralph; van Straten, Willem; Keane, Evan; Kerr, Matthew; Champion, David; Jameson, Andrew; Ng, Cherry; Tiburzi, Caterina; Flynn, Chris; Caleb, Manisha; Morello, Vincent

2014-10-01

Studies of the 23 MSPs in the globular cluster (GC) 47 Tucanae (47 Tuc) have provided a wealth of interesting science. Timing of these MSPs (all with periods between 2 and 8 ms) has enabled us to probe the environment and dynamics of the cluster in impressive detail and has allowed us to put constraints on the masses of several of the pulsars. However, previous studies of the cluster were limited by the hardware used. The AFB provided 1-bit digitisation and relatively coarse 88 us sampling. Through the use of the CASPSR backend, we will observe 47 Tuc and its 23 MSPs with unprecedented time resolution. For timing we will achieve almost two orders of magnitude better time resolution, allowing us to resolve out features in the profiles of several cluster pulsars, greatly improving their timing accuracy. For search purposes the CASPSR backend will provide a coherently dedispersed filterbank file at the cluster's dispersion measure. We will search this data using state-of-the-art GPU acceleration searching codes to hunt for compact binary systems. In tandem with timing and searching, we will perform real-time transient searching to hunt for fast radio bursts (FRBs). Through shadowing with the Molonglo telescope, we will be able to provide the best localisation, spectral index measurement and repetition limits for any detected FRB. This will provide us with much needed information for multi-wavelength follow-up and will give new insight into the origins of these mysterious events.

Qualitation and quantification of specific polysaccharides from Panax species using GC-MS, saccharide mapping and HPSEC-RID-MALLS.

PubMed

Cheong, Kit-Leong; Wu, Ding-Tao; Deng, Yong; Leong, Fong; Zhao, Jing; Zhang, Wen-Jie; Li, Shao-Ping

2016-11-20

The objective of this study was to qualify and quantify the specific polysaccharides in Panax spp. The analyses of specific polysaccharides were performed by using GC-MS, saccharide mapping and high performance size exclusion chromatography (HPSEC) coupled with multi angle laser light scattering (MALLS) and refractive index detector (RID). Results showed that compositional monosaccharides were the same in different species of Panax and composed of rhamnose, arabinose, galacturonic acid, mannose, glucose, and galactose. Saccharide mapping results showed that glycosides linkages, which existed in specific polysaccharides from Panax spp., were similar. Additionally, the content of specific polysaccharides of P. ginseng, P. notoginseng and P. quinquefolium were 17.9-20.5mg/g, 11.9-15.0mg/g, and 9.9-13.3mg/g, respectively. P. ginseng, P. notoginseng, and P. quinquefolium could be clustered into three groups using both hierarchical cluster analysis and principal component analysis. The results possessed great potential in characterization and content determination of specific polysaccharides in Panax spp. Copyright © 2016 Elsevier Ltd. All rights reserved.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Powalka, Mathieu; Lançon, Ariane; Duc, Pierre-Alain

Large samples of globular clusters (GC) with precise multi-wavelength photometry are becoming increasingly available and can be used to constrain the formation history of galaxies. We present the results of an analysis of Milky Way (MW) and Virgo core GCs based on 5 optical-near-infrared colors and 10 synthetic stellar population models. For the MW GCs, the models tend to agree on photometric ages and metallicities, with values similar to those obtained with previous studies. When used with Virgo core GCs, for which photometry is provided by the Next Generation Virgo cluster Survey (NGVS), the same models generically return younger ages.more » This is a consequence of the systematic differences observed between the locus occupied by Virgo core GCs and models in panchromatic color space. Only extreme fine-tuning of the adjustable parameters available to us can make the majority of the best-fit ages old. Although we cannot exclude that the formation history of the Virgo core may lead to more conspicuous populations of relatively young GCs than in other environments, we emphasize that the intrinsic properties of the Virgo GCs are likely to differ systematically from those assumed in the models. Thus, the large wavelength coverage and photometric quality of modern GC samples, such as those used here, is not by itself sufficient to better constrain the GC formation histories. Models matching the environment-dependent characteristics of GCs in multi-dimensional color space are needed to improve the situation.« less

ARE SOME MILKY WAY GLOBULAR CLUSTERS HOSTED BY UNDISCOVERED GALAXIES?

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zaritsky, Dennis; Crnojević, Denija; Sand, David J., E-mail: dennis.zaritsky@gmail.com

2016-07-20

The confirmation of a globular cluster (GC) in the recently discovered ultrafaint galaxy Eridanus II (Eri II) motivated us to examine the question posed in the title. After estimating the halo mass of Eri II using a published stellar mass—halo mass relation, the one GC in this galaxy supports extending the relationship between the number of GCs hosted by a galaxy and the galaxy’s total mass about two orders of magnitude in stellar mass below the previous limit. For this empirically determined specific frequency of between 0.06 and 0.39 GCs per 10{sup 9} M {sub ⊙} of total mass, themore » surviving Milky Way (MW) subhalos with masses smaller than 10{sup 10} M {sub ⊙} could host as many as 5–31 GCs, broadly consistent with the actual population of outer halo MW GCs, although matching the radial distribution in detail remains a challenge. Using a subhalo mass function from published high-resolution numerical simulations and a Poissonian model for populating those halos with the aforementioned empirically constrained frequency, we find that about 90% of these GCs lie in lower-mass subhalos than that of Eri II. From what we know about the stellar mass–halo mass function, the subhalo mass function, and the mass-normalized GC specific frequency, we conclude that some of the MW’s outer halo GCs are likely to be hosted by undetected subhalos with extremely modest stellar populations.« less

The Little Engines That Could? Globular Clusters Contribute Significantly to Reionization-era Star Formation

NASA Astrophysics Data System (ADS)

Boylan-Kolchin, Michael

2018-06-01

Metal-poor globular clusters (GCs) are both numerous and ancient, which indicates that they may be important contributors to ionizing radiation in the reionization era. Starting from the observed number density and stellar mass function of old GCs at z = 0, I compute the contribution of GCs to ultraviolet luminosity functions (UVLFs) in the high-redshift Universe (10 ≳ z ≳ 4). Even under absolutely minimal assumptions - no disruption of GCs and no reduction in GC stellar mass from early times to the present - GC star formation contributes non-negligibly to the UVLF at luminosities that are accessible to the Hubble Space Telescope (HST; M1500 ≈ -17). If the stellar masses of GCs were significantly higher in the past, as is predicted by most models explaining GC chemical anomalies, then GCs dominate the UV emission from many galaxies in existing deep-field observations. On the other hand, it is difficult to reconcile observed UVLFs with models requiring stellar masses at birth that exceed present-day stellar masses by more than a factor of 5. The James Webb Space Telescope (JWST) will be able to directly detect individual GCs at z ˜ 6 in essentially all bright galaxies, and many galaxies below the knee of the UVLF, for most of the scenarios considered here. The properties of a subset of high-redshift sources with -19 ≲ M_{1500} ≲ -14 in HST lensing fields indicate that they may actually be GCs in formation.

Stellar streams as gravitational experiments. II. Asymmetric tails of globular cluster streams

NASA Astrophysics Data System (ADS)

Thomas, G. F.; Famaey, B.; Ibata, R.; Renaud, F.; Martin, N. F.; Kroupa, P.

2018-01-01

Kinematically cold tidal streams of globular clusters (GC) are excellent tracers of the Galactic gravitational potential at moderate Galactocentric distances, and can also be used as probes of the law of gravity on Galactic scales. Here, we compare for the first time the generation of such streams in Newtonian and Milgromian gravity (MOND). We first computed analytical results to investigate the expected shape of the GC gravitational potential in both frameworks, and we then ran N-body simulations with the Phantom of Ramses code. We find that the GCs tend to become lopsided in MOND. This is a consequence of the external field effect which breaks the strong equivalence principle. When the GC is filling its tidal radius the lopsidedness generates a strongly asymmetric tidal stream. In Newtonian dynamics, such markedly asymmetric streams can in general only be the consequence of interactions with dark matter subhalos, giant molecular clouds, or interaction with the Galactic bar. In these Newtonian cases, the asymmetry is the consequence of a very large gap in the stream, whilst in MOND it is a true asymmetry. This should thus allow us in the future to distinguish these different scenarios by making deep observations of the environment of the asymmetric stellar stream of Palomar 5. Moreover, our simulations indicate that the high internal velocity dispersion of Palomar 5 for its small stellar mass would be natural in MOND. The movie is available in electronic form at http://www.aanda.org

Differences in the rotational properties of multiple stellar populations in M13: a faster rotation for the `extreme' chemical subpopulation

NASA Astrophysics Data System (ADS)

Cordero, M. J.; Hénault-Brunet, V.; Pilachowski, C. A.; Balbinot, E.; Johnson, C. I.; Varri, A. L.

2017-03-01

We use radial velocities from spectra of giants obtained with the WIYN telescope, coupled with existing chemical abundance measurements of Na and O for the same stars, to probe the presence of kinematic differences among the multiple populations of the globular cluster (GC) M13. To characterize the kinematics of various chemical subsamples, we introduce a method using Bayesian inference along with a Markov chain Monte Carlo algorithm to fit a six-parameter kinematic model (including rotation) to these subsamples. We find that the so-called extreme population (Na-enhanced and extremely O-depleted) exhibits faster rotation around the centre of the cluster than the other cluster stars, in particular, when compared with the dominant `intermediate' population (moderately Na-enhanced and O-depleted). The most likely difference between the rotational amplitude of this extreme population and that of the intermediate population is found to be ˜4 km s-1 , with a 98.4 per cent probability that the rotational amplitude of the extreme population is larger than that of the intermediate population. We argue that the observed difference in rotational amplitudes, obtained when splitting subsamples according to their chemistry, is not a product of the long-term dynamical evolution of the cluster, but more likely a surviving feature imprinted early in the formation history of this GC and its multiple populations. We also find an agreement (within uncertainties) in the inferred position angle of the rotation axis of the different subpopulations considered. We discuss the constraints that these results may place on various formation scenarios.

Anti-tumor response with immunologically modified carbon nanotubes and phototherapy

NASA Astrophysics Data System (ADS)

Acquaviva, Joseph T.; Zhou, Feifan; Boarman, Ellen; Chen, Wei R.

2013-02-01

While successes of different cancer therapies have been achieved in various degrees a systemic immune response is needed to effectively treat late-stage, metastatic cancers, and to establish long-term tumor resistance in the patients. A novel method for combating metastatic cancers has been developed using immunologically modified carbon nanotubes in conjunction with phototherapy. Glycated chitosan (GC) is a potent immunological adjuvant capable of increasing host immune responses, including antigen presentation by activation of dendritic cells (DCs) and causing T cell proliferation. GC is also an effective surfactant for nanomaterials. By combining single-walled carbon nanotubes (SWNTs) and GC, immunologically modified carbon nanotubes (SWNT-GC) were constructed. The SWNT-GC suspension retains the enhanced light absorption properties in the near infrared (NIR) region and the ability to enter cells, which are characteristic of SWNTs. The SWNT-GC also retains the immunological properties of GC. Cellular SWNT-GC treatments increased macrophage activity, DC activation and T cell proliferation. When cellular SWNT-GC was irradiated with a laser of an appropriate wavelength, these immune activities could be enhanced. The combination of laser irradiation and SWNT-GC induced cellular toxicity in targeted tumor cells, leading to a systemic antitumor response. Immunologically modified carbon nanotubes in conjunction with phototherapy is a novel and promising method to produce a systemic immune response for the treatment of metastatic cancers.

The formation and assembly history of the Milky Way revealed by its globular cluster population

NASA Astrophysics Data System (ADS)

Kruijssen, J. M. Diederik; Pfeffer, Joel L.; Reina-Campos, Marta; Crain, Robert A.; Bastian, Nate

2018-06-01

We use the age-metallicity distribution of 96 Galactic globular clusters (GCs) to infer the formation and assembly history of the Milky Way (MW), culminating in the reconstruction of its merger tree. Based on a quantitative comparison of the Galactic GC population to the 25 cosmological zoom-in simulations of MW-mass galaxies in the E-MOSAICS project, which self-consistently model the formation and evolution of GC populations in a cosmological context, we find that the MW assembled quickly for its mass, reaching {25, 50}% of its present-day halo mass already at z = {3, 1.5} and half of its present-day stellar mass at z = 1.2. We reconstruct the MW's merger tree from its GC age-metallicity distribution, inferring the number of mergers as a function of mass ratio and redshift. These statistics place the MW's assembly rate among the 72th-94th percentile of the E-MOSAICS galaxies, whereas its integrated properties (e.g. number of mergers, halo concentration) match the median of the simulations. We conclude that the MW has experienced no major mergers (mass ratios >1:4) since z ˜ 4, sharpening previous limits of z ˜ 2. We identify three massive satellite progenitors and constrain their mass growth and enrichment histories. Two are proposed to correspond to Sagittarius (few 108M⊙) and Canis Major (˜109 M⊙). The third satellite has no known associated relic and was likely accreted between z = 0.6-1.3. We name this enigmatic galaxy Kraken and propose that it is the most massive satellite (M* ˜ 2 × 109 M⊙) ever accreted by the MW. We predict that ˜40% of the Galactic GCs formed ex-situ (in galaxies with masses M* = 2 × 107-2 × 109 M⊙), with 6 ± 1 being former nuclear clusters.

Application of the Reference Method Isotope Dilution Gas Chromatography Mass Spectrometry (ID/GC/MS) to Establish Metrological Traceability for Calibration and Control of Blood Glucose Test Systems

PubMed Central

Andreis, Elisabeth; Küllmer, Kai

2014-01-01

Self-monitoring of blood glucose (BG) by means of handheld BG systems is a cornerstone in diabetes therapy. The aim of this article is to describe a procedure with proven traceability for calibration and evaluation of BG systems to guarantee reliable BG measurements. Isotope dilution gas chromatography mass spectrometry (ID/GC/MS) is a method that fulfills all requirements to be used in a higher-order reference measurement procedure. However, this method is not applicable for routine measurements because of the time-consuming sample preparation. A hexokinase method with perchloric acid (PCA) sample pretreatment is used in a measurement procedure for such purposes. This method is directly linked to the ID/GC/MS method by calibration with a glucose solution that has an ID/GC/MS-determined target value. BG systems are calibrated with whole blood samples. The glucose levels in such samples are analyzed by this ID/GC/MS-linked hexokinase method to establish traceability to higher-order reference material. For method comparison, the glucose concentrations in 577 whole blood samples were measured using the PCA-hexokinase method and the ID/GC/MS method; this resulted in a mean deviation of 0.1%. The mean deviation between BG levels measured in >500 valid whole blood samples with BG systems and the ID/GC/MS was 1.1%. BG systems allow a reliable glucose measurement if a true reference measurement procedure, with a noninterrupted traceability chain using ID/GC/MS linked hexokinase method for calibration of BG systems, is implemented. Systems should be calibrated by means of a traceable and defined measurement procedure to avoid bias. PMID:24876614

Establishing a high yielding streptomyces-based cell-free protein synthesis system.

PubMed

Li, Jian; Wang, He; Kwon, Yong-Chan; Jewett, Michael C

2017-06-01

Cell-free protein synthesis (CFPS) has emerged as a powerful platform for applied biotechnology and synthetic biology, with a range of applications in synthesizing proteins, evolving proteins, and prototyping genetic circuits. To expand the current CFPS repertoire, we report here the development and optimization of a Streptomyces-based CFPS system for the expression of GC-rich genes. By developing a streamlined crude extract preparation protocol and optimizing reaction conditions, we were able to achieve active enhanced green fluorescent protein (EGFP) yields of greater than 50 μg/mL with batch reactions lasting up to 3 h. By adopting a semi-continuous reaction format, the EGFP yield could be increased to 282 ± 8 μg/mL and the reaction time was extended to 48 h. Notably, our extract preparation procedures were robust to multiple Streptomyces lividans and Streptomyces coelicolor strains, although expression yields varied. We show that our optimized Streptomyces lividans system provides benefits when compared to an Escherichia coli-based CFPS system for increasing percent soluble protein expression for four Streptomyces-originated high GC-content genes that are involved in biosynthesis of the nonribosomal peptides tambromycin and valinomycin. Looking forward, we believe that our Streptomyces-based CFPS system will contribute significantly towards efforts to express complex natural product gene clusters (e.g., nonribosomal peptides and polyketides), providing a new avenue for obtaining and studying natural product biosynthesis pathways. Biotechnol. Bioeng. 2017;114: 1343-1353. © 2017 Wiley Periodicals, Inc. © 2017 Wiley Periodicals, Inc.

Decoration of mesoporous Co3O4 nanospheres assembled by monocrystal nanodots on g-C3N4 to construct Z-scheme system for improving photocatalytic performance

NASA Astrophysics Data System (ADS)

Wu, Haijun; Li, Chunmei; Che, Huinan; Hu, Hao; Hu, Wei; Liu, Chunbo; Ai, Junzhe; Dong, Hongjun

2018-05-01

The Co3O4/g-C3N4 Z-scheme system is constructed by decoration of mesoporous Co3O4 nanospheres assembled by monocrystal nanodots on the surface of g-C3N4, which dramatically improves the photocatalytic activity for degrading tetracycline hydrochloride (TC) compared with single g-C3N4. The microstructure investigations evidence the mesoporous structure and enlarged specific surface area of Co3O4/g-C3N4 Z-scheme system, which implies the increase of surface active sites and adsorption ability for reactant molecules. Moreover, by virtue of analyzing physical and photoelectrochemical properties, it evidences that the decoration effect of mesoporous Co3O4 nanospheres on the surface of g-C3N4 obviously improves the transfer and separation efficiency of charge carriers between two phase interfaces and broadens light harvest range. These important factors are beneficial to enhancing photocatalytic activity of Co3O4/g-C3N4 Z-scheme system. In addition, the photocatalityc reaction mechanism is also revealed in depth.

Gas chromatograph-mass spectrometer (GC/MS) system for quantitative analysis of reactive chemical compounds

DOEpatents

Grindstaff, Quirinus G.

1992-01-01

Described is a new gas chromatograph-mass spectrometer (GC/MS) system and method for quantitative analysis of reactive chemical compounds. All components of such a GC/MS system external to the oven of the gas chromatograph are programmably temperature controlled to operate at a volatilization temperature specific to the compound(s) sought to be separated and measured.

THE FRAGMENTING PAST OF THE DISK AT THE GALACTIC CENTER: THE CULPRIT FOR THE MISSING RED GIANTS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Amaro-Seoane, Pau; Chen, Xian, E-mail: Pau.Amaro-Seoane@aei.mpg.de, E-mail: Xian.Chen@aei.mpg.de

2014-01-20

Since 1996 we have known that the Galactic Center (GC) displays a core-like distribution of red giant branch (RGB) stars starting at ∼10'', which poses a theoretical problem because the GC should have formed a segregated cusp of old stars. This issue has been addressed invoking stellar collisions, massive black hole binaries, and infalling star clusters, which can explain it to some extent. Another observational fact, key to the work presented here, is the presence of a stellar disk at the GC. We postulate that the reason for the missing stars in the RGB is closely intertwined with the diskmore » formation process, which initially was gaseous and went through a fragmentation phase to form the stars. Using simple analytical estimates, we prove that during fragmentation the disk developed regions with densities much higher than a homogeneous gaseous disk, i.e., ''clumps'', which were optically thick, and hence contracted slowly. Stars in the GC interacted with them and in the case of RGB stars, the clumps were dense enough to totally remove their outer envelopes after a relatively low number of impacts. Giant stars in the horizontal branch (HB), however, have much denser envelopes. Hence, the fragmentation phase of the disk must have had a lower impact on their distribution, because it was more difficult to remove their envelopes. We predict that future deeper observations of the GC should reveal less depletion of HB stars and that the released dense cores of RGB stars will still be populating the GC.« less

Lingzhi or Reishi Medicinal Mushroom, Ganoderma lucidum (Agaricomycetes), Inhibits Candida Biofilms: A Metabolomic Approach.

PubMed

Bhardwaj, Anuja; Gupta, Payal; Kumar, Navin; Mishra, Jigni; Kumar, Ajai; Rakhee, Rajput; Misra, Kshipra

2017-01-01

This article presents a comparative gas chromatography (GC)-mass spectrometry (MS)-based metabolomic analysis of mycelia and fruiting bodies of the medicinal mushroom Ganoderma lucidum. Three aqueous extracts-mycelia, fruiting bodies, and a mixture of them-and their sequential fractions (methanolic and ethyl acetate), prepared using an accelerated solvent extractor, were characterized by GC-MS to determine volatile organic compounds and by high-performance thin-layer chromatography to quantify ascorbic acid, a potent antioxidant. In addition, these extracts and fractions were assessed against Candida albicans and C. glabrata biofilms via the XTT reduction assay, and their antioxidant potential was evaluated. Application of chemometrics (hierarchical cluster analysis and principal component analysis) to GC data revealed variability in volatile organic compound profiles among G. lucidum extracts and fractions. The mycelial aqueous extract demonstrated higher anti-Candida activity and ascorbic acid content among all the extracts and fractions. Thus, this study illustrates the preventive effect of G. lucidum against C. albicans and C. glabrata biofilms along with its nutritional value.

THE AGES OF 55 GLOBULAR CLUSTERS AS DETERMINED USING AN IMPROVED ΔV{sup HB}{sub TO} METHOD ALONG WITH COLOR-MAGNITUDE DIAGRAM CONSTRAINTS, AND THEIR IMPLICATIONS FOR BROADER ISSUES

DOE Office of Scientific and Technical Information (OSTI.GOV)

VandenBerg, Don A.; Brogaard, K.; Leaman, R.

Ages have been derived for 55 globular clusters (GCs) for which Hubble Space Telescope Advanced Camera for Surveys photometry is publicly available. For most of them, the assumed distances are based on fits of theoretical zero-age horizontal-branch (ZAHB) loci to the lower bound of the observed distributions of HB stars, assuming reddenings from empirical dust maps and metallicities from the latest spectroscopic analyses. The age of the isochrone that provides the best fit to the stars in the vicinity of the turnoff (TO) is taken to be the best estimate of the cluster age. The morphology of isochrones between themore » TO and the beginning part of the subgiant branch (SGB) is shown to be nearly independent of age and chemical abundances. For well-defined color-magnitude diagrams (CMDs), the error bar arising just from the 'fitting' of ZAHBs and isochrones is ≈ ± 0.25 Gyr, while that associated with distance and chemical abundance uncertainties is ∼ ± 1.5-2 Gyr. The oldest GCs in our sample are predicted to have ages of ≈13.0 Gyr (subject to the aforementioned uncertainties). However, the main focus of this investigation is on relative GC ages. In conflict with recent findings based on the relative main-sequence fitting method, which have been studied in some detail and reconciled with our results, ages are found to vary from mean values of ≈12.5 Gyr at [Fe/H] ∼< – 1.7 to ≈11 Gyr at [Fe/H] ∼> –1. At intermediate metallicities, the age-metallicity relation (AMR) appears to be bifurcated: one branch apparently contains clusters with disk-like kinematics, whereas the other branch, which is displaced to lower [Fe/H] values by ≈0.6 dex at a fixed age, is populated by clusters with halo-type orbits. The dispersion in age about each component of the AMR is ∼ ± 0.5 Gyr. There is no apparent dependence of age on Galactocentric distance (R{sub G}) nor is there a clear correlation of HB type with age. As previously discovered in the case of M3 and M13, subtle variations have been found in the slope of the SGB in the CMDs of other metal-poor ([Fe/H] ∼< – 1.5) GCs. They have been tentatively attributed to cluster-to-cluster differences in the abundance of helium. Curiously, GCs that have relatively steep 'M13-like' SGBs tend to be massive systems, located at small R{sub G}, that show the strongest evidence of in situ formation of multiple stellar populations. The clusters in the other group are typically low-mass systems (with 2-3 exceptions, including M3) that, at the present time, should not be able to retain the matter lost by mass-losing stars due either to the development of GC winds or to ram-pressure stripping by the halo interstellar medium. The apparent separation of the two groups in terms of their present-day gas retention properties is difficult to understand if all GCs were initially ∼20 times their current masses. The lowest-mass systems, in particular, may have never been massive enough to retain enough gas to produce a significant population of second-generation stars. In this case, the observed light element abundance variations, which are characteristic of all GCs, were presumably present in the gas out of which the observed cluster stars formed.« less

Causal inference in nonlinear systems: Granger causality versus time-delayed mutual information

NASA Astrophysics Data System (ADS)

Li, Songting; Xiao, Yanyang; Zhou, Douglas; Cai, David

2018-05-01

The Granger causality (GC) analysis has been extensively applied to infer causal interactions in dynamical systems arising from economy and finance, physics, bioinformatics, neuroscience, social science, and many other fields. In the presence of potential nonlinearity in these systems, the validity of the GC analysis in general is questionable. To illustrate this, here we first construct minimal nonlinear systems and show that the GC analysis fails to infer causal relations in these systems—it gives rise to all types of incorrect causal directions. In contrast, we show that the time-delayed mutual information (TDMI) analysis is able to successfully identify the direction of interactions underlying these nonlinear systems. We then apply both methods to neuroscience data collected from experiments and demonstrate that the TDMI analysis but not the GC analysis can identify the direction of interactions among neuronal signals. Our work exemplifies inference hazards in the GC analysis in nonlinear systems and suggests that the TDMI analysis can be an appropriate tool in such a case.

The in vitro GcMAF effects on endocannabinoid system transcriptionomics, receptor formation, and cell activity of autism-derived macrophages.

PubMed

Siniscalco, Dario; Bradstreet, James Jeffrey; Cirillo, Alessandra; Antonucci, Nicola

2014-04-17

Immune system dysregulation is well-recognized in autism and thought to be part of the etiology of this disorder. The endocannabinoid system is a key regulator of the immune system via the cannabinoid receptor type 2 (CB2R) which is highly expressed on macrophages and microglial cells. We have previously published significant differences in peripheral blood mononuclear cell CB2R gene expression in the autism population. The use of the Gc protein-derived Macrophage Activating Factor (GcMAF), an endogenous glycosylated vitamin D binding protein responsible for macrophage cell activation has demonstrated positive effects in the treatment of autistic children. In this current study, we investigated the in vitro effects of GcMAF treatment on the endocannabinoid system gene expression, as well as cellular activation in blood monocyte-derived macrophages (BMDMs) from autistic patients compared to age-matched healthy developing controls. To achieve these goals, we used biomolecular, biochemical and immunocytochemical methods. GcMAF treatment was able to normalize the observed differences in dysregulated gene expression of the endocannabinoid system of the autism group. GcMAF also down-regulated the over-activation of BMDMs from autistic children. This study presents the first observations of GcMAF effects on the transcriptionomics of the endocannabinoid system and expression of CB2R protein. These data point to a potential nexus between endocannabinoids, vitamin D and its transporter proteins, and the immune dysregulations observed with autism.

The in vitro GcMAF effects on endocannabinoid system transcriptionomics, receptor formation, and cell activity of autism-derived macrophages

PubMed Central

2014-01-01

Background Immune system dysregulation is well-recognized in autism and thought to be part of the etiology of this disorder. The endocannabinoid system is a key regulator of the immune system via the cannabinoid receptor type 2 (CB2R) which is highly expressed on macrophages and microglial cells. We have previously published significant differences in peripheral blood mononuclear cell CB2R gene expression in the autism population. The use of the Gc protein-derived Macrophage Activating Factor (GcMAF), an endogenous glycosylated vitamin D binding protein responsible for macrophage cell activation has demonstrated positive effects in the treatment of autistic children. In this current study, we investigated the in vitro effects of GcMAF treatment on the endocannabinoid system gene expression, as well as cellular activation in blood monocyte-derived macrophages (BMDMs) from autistic patients compared to age-matched healthy developing controls. Methods To achieve these goals, we used biomolecular, biochemical and immunocytochemical methods. Results GcMAF treatment was able to normalize the observed differences in dysregulated gene expression of the endocannabinoid system of the autism group. GcMAF also down-regulated the over-activation of BMDMs from autistic children. Conclusions This study presents the first observations of GcMAF effects on the transcriptionomics of the endocannabinoid system and expression of CB2R protein. These data point to a potential nexus between endocannabinoids, vitamin D and its transporter proteins, and the immune dysregulations observed with autism. PMID:24739187

Axial thermal gradients in microchip gas chromatography.

PubMed

Wang, Anzi; Hynynen, Sampo; Hawkins, Aaron R; Tolley, Samuel E; Tolley, H Dennis; Lee, Milton L

2014-12-29

Fabrication technologies for microelectromechanical systems (MEMS) allow miniaturization of conventional benchtop gas chromatography (GC) to portable, palm-sized microfabricated GC (μGC) devices, which are suitable for on-site chemical analysis and remote sensing. The separation performance of μGC systems, however, has not been on par with conventional GC. Column efficiency, peak symmetry and resolution are often compromised by column defects and non-ideal injections. The relatively low performance of μGC devices has impeded their further commercialization and broader application. In this work, the separation performance of μGC columns was improved by incorporating thermal gradient gas chromatography (TGGC). The analysis time was ∼20% shorter for TGGC separations compared to conventional temperature-programmed GC (TPGC) when a wide sample band was introduced into the column. Up to 50% reduction in peak tailing was observed for polar analytes, which improved their resolution. The signal-to-noise ratios (S/N) of late-eluting peaks were increased by 3-4 fold. The unique focusing effect of TGGC overcomes many of the previous shortcomings inherent in μGC analyses. Copyright © 2014 Elsevier B.V. All rights reserved.

Draft Genome Sequence of Thiostrepton-Producing Streptomyces azureus ATCC 14921

PubMed Central

Sakihara, Kengo; Maeda, Jumpei; Tashiro, Kosuke; Fujino, Yasuhiro; Kuhara, Satoru; Ohshima, Toshihisa; Ogata, Seiya

2015-01-01

Streptomyces azureus ATCC 14921 belongs to the Streptomyces cyaneus cluster and is known to be a thiostrepton producer. Here, we report a draft genome sequence for this strain, consisting of 350 contigs containing a total of 8,790,525 bp, 8,164 predicted coding sequences, and a G+C content of 70.9%. PMID:26494661

The -765G>C polymorphism in the cyclooxygenase-2 gene and digestive system cancer: a meta-analysis.

PubMed

Zhao, Fen; Cao, Yue; Zhu, Hong; Huang, Min; Yi, Cheng; Huang, Ying

2014-01-01

Published data regarding associations between the -765G>C polymorphism in cyclooxygenase-2 (COX-2) gene and digestive system cancer risk have been inconclusive. The aim of this study was to comprehensively evaluate the genetic risk of the -765G>C polymorphism in the COX-2 gene for digestive system cancer. A search was performed in Pubmed, Medline (Ovid), Embase, CNKI, Weipu, Wanfang and CBM databases, covering all studies until Feb 10, 2014. Statistical analysis was performed using Revman5.2. A total of 10,814 cases and 16,174 controls in 38 case-control studies were included in this meta-analysis. The results indicated that C allele carriers (GC+CC) had a 20% increased risk of digestive system cancer when compared with the homozygote GG (odds ratio (OR)=1.20, 95% confidence interval (CI), 1.00-1.44 for GC+CC vs GG). In the subgroup analysis by ethnicity, significant elevated risks were associated with C allele carriers (GC+CC) in Asians (OR = 1.46, 95% CI=1.07-2.01, and p=0.02) and Africans (OR=2.12, 95% CI=1.57-2.87, and p< 0.00001), but not among Caucasians, Americans and mixed groups. For subgroup analysis by cancer type (GC+CC vs GG), significant associations were found between the -765G>C polymorphism and higher risk for gastric cancer (OR=1.64, 95% CI=1.03-2.61, and p=0.04), but not for colorectal cancer, oral cancer, esophageal cancer, and others. Regarding study design (GC+CC vs GG), no significant associations were found in then population-based case-control (PCC), hospital-based case-control (HCC) and family-based case-control (FCC) studies. This meta-analysis suggested that the -765G>C polymorphism of the COX-2 gene is a potential risk factor for digestive system cancer in Asians and Africans and gastric cancer overall.

Deglycosylation of serum vitamin D3-binding protein by alpha-N-acetylgalactosaminidase detected in the plasma of patients with systemic lupus erythematosus.

PubMed

Yamamoto, N; Naraparaju, V R; Moore, M; Brent, L H

1997-03-01

A serum glycoprotein, Gc protein (vitamin D3-binding protein), can be converted by beta-galactosidase of B cells and sialidase of T cells to a potent macrophage-activating factor (MAF), a protein with N-acetylgalactosamine as the remaining sugar moiety. Thus, Gc protein is the precursor for MAF. Treatment of Gc protein with immobilized beta-galactosidase and sialidase generates a remarkably high titered macrophage-activating factor (GcMAF). When peripheral blood monocytes/ macrophages (designated macrophages) of 33 systemic lupus erythematosus patients were incubated with GcMAF (100 pg/ml), the macrophages of all patients were activated as determined by superoxide generation. However, the precursor activity of patient plasma Gc protein was lost or reduced in these patients. Loss of the precursor activity was the result of deglycosylation of plasma Gc protein by alpha-N-acetylgalactosaminidase activity found in the patient plasma. Levels of plasma alpha-N-acetylgalactosaminidase activity in individual patients had an inverse correlation with the MAF precursor activity of their plasma Gc protein. Deglycosylated Gc protein cannot be converted to macro-phage-activating factor. The resulting defect in macro-phage activation may lead to an inability to clear pathogenic immune complexes. Thus, elevated plasma alpha-N-acetylgalactosaminidase activity resulting in the loss of MAF precursor activity and reduced macro-phage activity may play a role in the pathogenesis of systemic lupus erythematosus.

A quantification method for peroxyacetyl nitrate (PAN) using gas chromatography (GC) with a non-radioactive pulsed discharge detector (PDD)

NASA Astrophysics Data System (ADS)

Zhang, Lei; Jaffe, Daniel A.; Gao, Xin; McClure, Crystal D.

2018-04-01

In this study, we developed a method for continuous PAN measurements by gas chromatography (GC) with a non-radioactive pulsed discharge detector (PDD). Operational parameters were optimized based on the ratio of peak height over baseline noise (P/N ratio). The GC/PDD system was compared with a traditional radioactive electron-capture detector (ECD). In the lab, the method detection limit (MDL) of the new GC/PDD method (9 pptv) was lower than the radioactive GC/ECD method (15 pptv), demonstrating its excellent potential. The MDL of GC/PDD in the field campaign at the Mt. Bachelor Observatory (MBO) was 23 pptv, higher than in the lab. This was caused in part by the decreased slope of the calibration curve resulting from the low air pressure level at MBO. However, the MDL level of GC/PDD at MBO is still low enough for accurate PAN measurements, although special attention should be paid to its application at high-elevation sites. Observations of PAN were conducted at MBO in the summer of 2016 with the GC/PDD system, and provided more evidence of the performance of the system. PAN was found to be highly correlated with CO. The promising performance of GC/PDD which does not require a radioactive source makes it a useful approach for accurate PAN measurements in the field.

Comparison of 16S ribosomal RNA genes in Clavibacter michiganensis subspecies with other coryneform bacteria.

PubMed

Li, X; De Boer, S H

1995-10-01

Nearly complete sequences (97-99%) of the 16S rRNA genes were determined for type strains of Clavibacter michiganensis subsp. michiganensis, Clavibacter michiganensis subsp. insidiosus, Clavibacter michiganensis subsp. sepedonicus, and Clavibacter michiganensis subsp. nebraskensis. The four subspecies had less than 1% dissimilarity in their 16S rRNA genes. Comparative studies indicated that the C. michiganensis subsp. shared relatively high homology with the 16S rRNA gene of Clavibacter xyli. Further comparison with representatives of other Gram-positive coryneform and related bacteria with high G+C% values showed that this group of bacteria was subdivided into three clusters. One cluster consisted of the Clavibacter michiganensis subsp., Clavibacter xyli, Arthrobacter globiformis, Arthrobacter simplex, and Frankia sp.; another cluster consisted of members of the corynebacteria-mycobacteria-nocardia (CMN) group of Mycobacteriaceae including Tsukamurella paurometabolum; and Propionibacterium freudenreichii alone formed a unique cluster, which was remote from other coryneform bacteria analyzed. The three clusters may reflect a systematic rank higher than the genus level among these bacteria.

Evaluation of the collaborative network of highly correlating skin proteins and its change following treatment with glucocorticoids

PubMed Central

2010-01-01

Background Glucocorticoids (GC) represent the core treatment modality for many inflammatory diseases. Its mode of action is difficult to grasp, not least because it includes direct modulation of many components of the extracellular matrix as well as complex anti-inflammatory effects. Protein expression profile of skin proteins is being changed with topical application of GC, however, the knowledge about singular markers in this regard is only patchy and collaboration is ill defined. Material/Methods Scar formation was observed under different doses of GC, which were locally applied on the back skin of mice (1 to 3 weeks). After euthanasia we analyzed protein expression of collagen I and III (picrosirius) in scar tissue together with 16 additional protein markers, which are involved in wound healing, with immunhistochemistry. For assessing GC's effect on co-expression we compared our results with a model of random figures to estimate how many significant correlations should be expected by chance. Results GC altered collagen and protein expression with distinct results in different areas of investigation. Most often we observed a reduced expression after application of low dose GC. In the scar infiltrate a multivariate analysis confirmed the significant impact of both GC concentrations. Calculation of Spearman's correlation coefficient similarly resulted in a significant impact of GC, and furthermore, offered the possibility to grasp the entire interactive profile in between all variables studied. The biological markers, which were connected by significant correlations could be arranged in a highly cross-linked network that involved most of the markers measured. A marker highly cross-linked with more than 3 significant correlations was indicated by a higher variation of all its correlations to the other variables, resulting in a standard deviation of > 0.2. Conclusion In addition to immunohistochemical analysis of single protein markers multivariate analysis of co-expressions by use of correlation coefficients reveals the complexity of biological relationships and identifies complex biological effects of GC on skin scarring. Depiction of collaborative clusters will help to understand functional pathways. The functional importance of highly cross-linked proteins will have to be proven in subsequent studies. PMID:20509951

Staging of intestinal- and diffuse-type gastric cancers with the OLGA and OLGIM staging systems.

PubMed

Cho, S-J; Choi, I J; Kook, M-C; Nam, B-H; Kim, C G; Lee, J Y; Ryu, K W; Kim, Y-W

2013-11-01

Operative link on gastritis assessment (OLGA) and Operative link on gastric intestinal metaplasia assessment (OLGIM) staging systems have been proposed for gastric cancer (GC) risk estimation. To validate the OLGA and OLGIM staging systems in a region with high risk of GC. This retrospective study included 474 GC patients and age- and sex-matched health screening control persons in a cancer centre hospital. We classified gastritis patterns according to the OLGA and OLGIM systems using the histological database that a pathologist prospectively evaluated using the updated Sydney system. GC risk according to the OLGA and OLGIM stages was evaluated using logistic regression analysis. More GC patients had OLGA stages III-IV (46.2%) than controls (26.6%, P < 0.001), particularly among patients with intestinal-type GCs (62.2%) compared with diffuse-type GCs (30.9%). OLGA stages III and IV were significantly associated with increased risk of GC [odds ratios (ORs), 2.09; P = 0.008 and 2.04; P = 0.014 respectively] in multivariate analysis. The association was more significant for intestinal-type (ORs, 4.76; P = 0.001 and 4.19; P = 0.002 respectively), but not diffuse-type GC. OLGIM stages from I to IV were significantly associated with increased risk of both intestinal-type (ORs, 3.64, 5.15, 7.89 and 13.20 respectively) and diffuse-type GC (ORs, 1.84, 2.59, 5.08 and 6.32 respectively) with a significantly increasing trend. As high OLGA and OLGIM stages are independent risk factors for gastric cancer, the staging systems may be useful for risk assessment in high-risk regions, especially for intestinal-type gastric cancer. © 2013 John Wiley & Sons Ltd.

Diagnosis of cystic fibrosis with chloride meter (Sherwood M926S chloride analyzer®) and sweat test analysis system (CFΔ collection system®) compared to the Gibson Cooke method.

PubMed

Emiralioğlu, Nagehan; Özçelik, Uğur; Yalçın, Ebru; Doğru, Deniz; Kiper, Nural

2016-01-01

Sweat test with Gibson Cooke (GC) method is the diagnostic gold standard for cystic fibrosis (CF). Recently, alternative methods have been introduced to simplify both the collection and analysis of sweat samples. Our aim was to compare sweat chloride values obtained by GC method with other sweat test methods in patients diagnosed with CF and whose CF diagnosis had been ruled out. We wanted to determine if the other sweat test methods could reliably identify patients with CF and differentiate them from healthy subjects. Chloride concentration was measured with GC method, chloride meter and sweat test analysis system; also conductivity was determined with sweat test analysis system. Forty eight patients with CF and 82 patients without CF underwent the sweat test, showing median sweat chloride values 98.9 mEq/L with GC method, 101 mmol/L with chloride meter, 87.8 mmol/L with sweat test analysis system. In non-CF group, median sweat chloride values were 16.8 mEq/L with GC method, 10.5 mmol/L with chloride meter, and 15.6 mmol/L with sweat test analysis system. Median conductivity value was 107.3 mmol/L in CF group and 32.1 mmol/L in non CF group. There was a strong positive correlation between GC method and the other sweat test methods with a statistical significance (r=0.85) in all subjects. Sweat chloride concentration and conductivity by other sweat test methods highly correlate with the GC method. We think that the other sweat test equipments can be used as reliably as the classic GC method to diagnose or exclude CF.

Deep Multi-telescope Photometry of NGC 5466. II. The Radial Behavior of the Mass Function Slope

NASA Astrophysics Data System (ADS)

Beccari, G.; Dalessandro, E.; Lanzoni, B.; Ferraro, F. R.; Bellazzini, M.; Sollima, A.

2015-12-01

We use a combination of data acquired with the Advanced Camera for Survey on board the Hubble Space Telescope and the Large Binocular Camera (LBC-blue) mounted on the Large Binocular Telescope to sample the main sequence (MS) stars of the globular cluster (GC) NGC 5466 in the mass range 0.3 < M/M⊙ < 0.8. We derive the cluster's Luminosity Function (LF) in several radial regions, from the center of the cluster out to the tidal radius. After corrections for incompleteness and field contamination, this was compared to theoretical LFs, obtained by multiplying a simple power-law mass function in the form dN/dm \\propto {m}α by the derivative of the mass-luminosity relationship of the best-fit isochrone. We find that α varies from -0.6 in the core region to -1.9 in the outer region. This fact allows us to prove by observation that the stars in NGC 5466 have experienced the effects of mass segregation. We compare the radial variation of α from the center out to 5 core radii (rc) in NGC 5466 and the GC M10, finding that the gradient of α in the first 5rc is more than a factor of 2 shallower in NGC 5466 than in M10, in line with the differences in the clusters’ relaxation timescales. NGC 5466 is dynamically younger than M10, with two-body relaxation processes only recently starting to shape the distribution of MS stars. This result fully agrees with the conclusion obtained in our previous works on the radial distribution of blue straggler stars, further confirming that this can be used as an efficient clock to measure the dynamical age of stellar systems. Based on data acquired using the Large Binocular Telescope (LBT). The LBT is an international collaboration among institutions in the United States, Italy and Germany. LBT Corporation partners are: The University of Arizona on behalf of the Arizona university system; Istituto Nazionale di Astrofisica, Italy; LBT Beteiligungsgesellschaft, Germany, representing the Max-Planck Society, the Astrophysical Institute Potsdam, and Heidelberg University; The Ohio State University, and The Research Corporation, on behalf of The University of Notre Dame, University of Minnesota, and University of Virginia.

Steroid profiling reveals widespread local regulation of glucocorticoid levels during mouse development.

PubMed

Taves, Matthew D; Plumb, Adam W; Sandkam, Benjamin A; Ma, Chunqi; Van Der Gugten, Jessica Grace; Holmes, Daniel T; Close, David A; Abraham, Ninan; Soma, Kiran K

2015-02-01

Glucocorticoids (GCs) are produced by the adrenal glands and circulate in the blood to coordinate organismal physiology. In addition, different tissues may independently regulate their local GC levels via local GC synthesis. Here, we find that in the mouse, endogenous GCs show tissue-specific developmental patterns, rather than mirroring GCs in the blood. Using solid-phase extraction, HPLC, and specific immunoassays, we quantified endogenous steroids and found that in tissues of female and male mice, (1) local GC levels can be much higher than systemic GC levels, (2) local GCs follow age-related patterns different from those of systemic GCs, and (3) local GCs have identities different from those of systemic GCs. For example, whereas corticosterone is the predominant circulating adrenal GC in mice, high concentrations of cortisol were measured in neonatal thymus, bone marrow, and heart. The presence of cortisol was confirmed with liquid chromatography-tandem mass spectrometry. In addition, gene expression of steroidogenic enzymes was detected across multiple tissues, consistent with local GC production. Our results demonstrate that local GCs can differ from GCs in circulating blood. This finding suggests that steroids are widely used as local (paracrine or autocrine) signals, in addition to their classic role as systemic (endocrine) signals. Local GC regulation may even be the norm, rather than the exception, especially during development.

Characterization of the velocity anisotropy of accreted globular clusters

NASA Astrophysics Data System (ADS)

Bianchini, P.; Sills, A.; Miholics, M.

2017-10-01

Galactic globular clusters (GCs) are believed to have formed in situ in the Galaxy as well as in dwarf galaxies later accreted on to the Milky Way. However, to date, there is no unambiguous signature to distinguish accreted GCs. Using specifically designed N-body simulations of GCs evolving in a variety of time-dependent tidal fields (describing the potential of a dwarf galaxy-Milky Way merger), we analyse the effects imprinted on the internal kinematics of an accreted GC. In particular, we look at the evolution of the velocity anisotropy. Our simulations show that at early phases, the velocity anisotropy is determined by the tidal field of the dwarf galaxy and subsequently the clusters will adapt to the new tidal environment, losing any signature of their original environment in a few relaxation times. At 10 Gyr, GCs exhibit a variety of velocity anisotropy profiles, namely, isotropic velocity distribution in the inner regions and either isotropy or radial/tangential anisotropy in the intermediate and outer regions. Independent of an accreted origin, the velocity anisotropy primarily depends on the strength of the tidal field cumulatively experienced by a cluster. Tangentially anisotropic clusters correspond to systems that have experienced stronger tidal fields and are characterized by higher tidal filling factor, r50/rj ≳ 0.17, higher mass-loss ≳ 60 per cent and relaxation times trel ≲ 109 Gyr. Interestingly, we demonstrate that the presence of tidal tails can significantly contaminate the measurements of velocity anisotropy when a cluster is observed in projection. Our characterization of the velocity anisotropy profiles in different tidal environments provides a theoretical benchmark for the interpretation of the unprecedented amount of three-dimensional kinematic data progressively available for Galactic GCs.

AGE AND STRUCTURE PARAMETERS OF THE REMOTE M31 GLOBULAR CLUSTER B514 BASED ON HST, 2MASS, GALEX, AND BATC OBSERVATIONS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ma Jun; Wang Song; Wu Zhenyu

2012-02-15

B514 is a remote M31 globular cluster (GC) which is located at a projected distance of R{sub p} {approx_equal} 55 kpc. Deep observations with the Advanced Camera for Surveys on the Hubble Space Telescope are used to provide accurate integrated light and star counts of B514. By coupling the analysis of the distribution of the integrated light with star counts, we are able to reliably follow the profile of the cluster out to {approx}40''. Based on the combined profile, we study in detail its surface brightness distribution in the F606W and F814W filters and determine its structural parameters by fittingmore » a single-mass isotropic King model. The results showed that the surface brightness distribution departs from the best-fit King model for r > 10''. B514 is quite flat in the inner region and has a larger half-light radius than the majority of normal GCs of the same luminosity. It is interesting that, in the M{sub V} versus log R{sub h} plane, B514 lies nearly on the threshold for ordinary GCs as defined by Mackey and van den Bergh. In addition, B514 was observed as part of the Beijing-Arizona-Taiwan-Connecticut (BATC) Multicolor Sky Survey, using 13 intermediate-band filters covering a wavelength range of 3000-8500 A. Based on aperture photometry, we obtain its spectral energy distributions (SEDs) as defined by the 13 BATC filters. We determine the cluster's age and mass by comparing its SEDs (from 2267 to 20000 Angstrom-Sign , comprised of photometric data from the near-ultraviolet band of the Galaxy Evolution Explorer, 5 Sloan Digital Sky Survey bands, 13 BATC intermediate-band filters, and Two Micron All Sky Survey near-infrared JHK{sub s} filters) with theoretical stellar population synthesis models, resulting in an age of 11.5 {+-} 3.5 Gyr. This age confirms the previous suggestion that B514 is an old GC in M31. B514 has a mass of 0.96-1.08 Multiplication-Sign 10{sup 6} M{sub Sun} and is a medium-mass GC in M31.« less

The SLUGGS survey: globular cluster kinematics in a `double sigma' galaxy - NGC 4473

NASA Astrophysics Data System (ADS)

Alabi, Adebusola B.; Foster, Caroline; Forbes, Duncan A.; Romanowsky, Aaron J.; Pastorello, Nicola; Brodie, Jean P.; Spitler, Lee R.; Strader, Jay; Usher, Christopher

2015-09-01

NGC 4473 is a so-called double sigma (2σ) galaxy, i.e. a galaxy with rare, double peaks in its 2D stellar velocity dispersion. Here, we present the globular cluster (GC) kinematics in NGC 4473 out to ˜10Re (effective radii) using data from combined Hubble Space Telescope/Advanced Camera for Surveys and Subaru/Suprime-Cam imaging and Keck/Deep Imaging Multi-Object Spectrograph. We find that the 2σ nature of NGC 4473 persists up to 3Re, though it becomes misaligned to the photometric major axis. We also observe a significant offset between the stellar and GC rotation amplitudes. This offset can be understood as a co-addition of counter-rotating stars producing little net stellar rotation. We identify a sharp radial transition in the GC kinematics at ˜4Re suggesting a well defined kinematically distinct halo. In the inner region (<4Re), the blue GCs rotate along the photometric major axis, but in an opposite direction to the galaxy stars and red GCs. In the outer region (>4Re), the red GCs rotate in an opposite direction compared to the inner region red GCs, along the photometric major axis, while the blue GCs rotate along an axis intermediate between the major and minor photometric axes. We also find a kinematically distinct population of very red GCs in the inner region with elevated rotation amplitude and velocity dispersion. The multiple kinematic components in NGC 4473 highlight the complex formation and evolutionary history of this 2σ galaxy, as well as a distinct transition between the inner and outer components.

Spitzer Infrared Spectrograph Observations of the Galactic Center: Quantifying the Extreme Ultraviolet/Soft X-ray Fluxes

NASA Astrophysics Data System (ADS)

Simpson, Janet P.

2018-04-01

It has long been shown that the extreme ultraviolet spectrum of the ionizing stars of H II regions can be estimated by comparing the observed line emission to detailed models. In the Galactic Center (GC), however, previous observations have shown that the ionizing spectral energy distribution (SED) of the local photon field is strange, producing both very low excitation ionized gas (indicative of ionization by late O stars) and also widespread diffuse emission from atoms too highly ionized to be found in normal H II regions. This paper describes the analysis of all GC spectra taken by Spitzer's Infrared Spectrograph and downloaded from the Spitzer Heritage Archive. In it, H II region densities and abundances are described, and serendipitously discovered candidate planetary nebulae, compact shocks, and candidate young stellar objects are tabulated. Models were computed with Cloudy, using SEDs from Starburst99 plus additional X-rays, and compared to the observed mid-infrared forbidden and recombination lines. The ages inferred from the model fits do not agree with recent proposed star formation sequences (star formation in the GC occurring along streams of gas with density enhancements caused by close encounters with the black hole, Sgr A*), with Sgr B1, Sgr C, and the Arches Cluster being all about the same age, around 4.5 Myr old, with similar X-ray requirements. The fits for the Quintuplet Cluster appear to give a younger age, but that could be caused by higher-energy photons from shocks from stellar winds or from a supernova.

Observing multiple populations in globular clusters with the ESO archive: NGC 6388 reloaded

NASA Astrophysics Data System (ADS)

Carretta, Eugenio; Bragaglia, Angela

2018-06-01

The metal-rich and old bulge globular cluster (GC) NGC 6388 is one of the most massive Galactic GCs (M 106 M⊙). However, the spectroscopic properties of its multiple stellar populations rested only on 32 red giants (only 7 of which observed with UVES, the others with GIRAFFE), given the difficulties in observing a rather distant cluster, heavily contaminated by bulge and disc field stars. We bypassed the problem using the resources of the largest telescope facility ever: the European Southern Observatory (ESO) archive. By selecting member stars identified by other programmes, we derive atmospheric parameters and the full set of abundances for 15 species from high-resolution UVES spectra of another 17 red giant branch stars in NGC 6388. We confirm that no metallicity dispersion is detectable in this GC. About 30% of the stars show the primordial composition of first-generation stars, about 20% present an extremely modified second-generation composition, and 50% have an intermediate composition. The stars are clearly distributed in the Al-O and Na-O planes in three discrete groups. We find substantial hints that more than a single class of polluters is required to reproduce the composition of the intermediate component in NGC 6388. In the heavily polluted component the sum Mg+Al increases as Al increases. The sum Mg+Al+Si is constant, and is the fossil record of hot H-burning at temperatures higher than about 70 MK in the first-generation polluters that contributed to form multiple populations in this cluster. Based on observations collected at ESO telescopes under programmes 073.D-0211 (propr ietary), and 073.D-0760, 381.D-0329, 095.D-0834 (archival).

The Optical/Near-infrared Extinction Law in Highly Reddened Regions

NASA Astrophysics Data System (ADS)

Hosek, Matthew W., Jr.; Lu, Jessica R.; Anderson, Jay; Do, Tuan; Schlafly, Edward F.; Ghez, Andrea M.; Clarkson, William I.; Morris, Mark R.; Albers, Saundra M.

2018-03-01

A precise extinction law is a critical input when interpreting observations of highly reddened sources such as young star clusters and the Galactic Center (GC). We use Hubble Space Telescope observations of a region of moderate extinction and a region of high extinction to measure the optical and near-infrared extinction law (0.8–2.2 μm). The moderate-extinction region is the young massive cluster Westerlund 1 (Wd1; A Ks ∼ 0.6 mag), where 453 proper-motion selected main-sequence stars are used to measure the shape of the extinction law. To quantify the shape, we define the parameter {{ \\mathcal S }}1/λ , which behaves similarly to a color-excess ratio, but is continuous as a function of wavelength. The high-extinction region is the GC (A Ks ∼ 2.5 mag), where 819 red clump stars are used to determine the normalization of the law. The best-fit extinction law is able to reproduce the Wd1 main-sequence colors, which previous laws misestimate by 10%–30%. The law is inconsistent with a single power law, even when only the near-infrared filters are considered, and has A F125W/A Ks and A F814W/A Ks values that are 18% and 24% higher than the commonly used Nishiyama et al. law, respectively. Using this law, we recalculate the Wd1 distance to be 3905 ± 422 pc from published observations of the eclipsing binary W13. This new extinction law should be used for highly reddened populations in the Milky Way, such as the Quintuplet cluster and Young Nuclear Cluster. A python code is provided to generate the law for future use.

The Gaia-ESO Survey: A globular cluster escapee in the Galactic halo

NASA Astrophysics Data System (ADS)

Lind, K.; Koposov, S. E.; Battistini, C.; Marino, A. F.; Ruchti, G.; Serenelli, A.; Worley, C. C.; Alves-Brito, A.; Asplund, M.; Barklem, P. S.; Bensby, T.; Bergemann, M.; Blanco-Cuaresma, S.; Bragaglia, A.; Edvardsson, B.; Feltzing, S.; Gruyters, P.; Heiter, U.; Jofre, P.; Korn, A. J.; Nordlander, T.; Ryde, N.; Soubiran, C.; Gilmore, G.; Randich, S.; Ferguson, A. M. N.; Jeffries, R. D.; Vallenari, A.; Allende Prieto, C.; Pancino, E.; Recio-Blanco, A.; Romano, D.; Smiljanic, R.; Bellazzini, M.; Damiani, F.; Hill, V.; de Laverny, P.; Jackson, R. J.; Lardo, C.; Zaggia, S.

2015-03-01

A small fraction of the halo field is made up of stars that share the light element (Z ≤ 13) anomalies characteristic of second generation globular cluster (GC) stars. The ejected stars shed light on the formation of the Galactic halo by tracing the dynamical history of the clusters, which are believed to have once been more massive. Some of these ejected stars are expected to show strong Al enhancement at the expense of shortage of Mg, but until now no such star has been found. We search for outliers in the Mg and Al abundances of the few hundreds of halo field stars observed in the first eighteen months of the Gaia-ESO public spectroscopic survey. One halo star at the base of the red giant branch, here referred to as 22593757-4648029 is found to have [ Mg/Fe ] = -0.36 ± 0.04 and [ Al/Fe ] = 0.99 ± 0.08, which is compatible with the most extreme ratios detected in GCs so far. We compare the orbit of 22593757-4648029 to GCs of similar metallicity andfind it unlikely that this star has been tidally stripped with low ejection velocity from any of the clusters. However, both chemical and kinematic arguments render it plausible that the star has been ejected at high velocity from the anomalous GC ω Centauri within the last few billion years. We cannot rule out other progenitor GCs, because some may have disrupted fully, and the abundance and orbital data are inadequate for many of those that are still intact. Based on data acquired by the Gaia-ESO Survey, programme ID 188.B-3002. Observations were made with ESO Telescopes at the La Silla Paranal Observatory.Appendix A is available in electronic form at http://www.aanda.org

Glycerol carbonate as green solvent for pretreatment of sugarcane bagasse

PubMed Central

2013-01-01

Background Pretreatment of lignocellulosic biomass is a prerequisite for effective saccharification to produce fermentable sugars. In this study, “green” solvent systems based on acidified mixtures of glycerol carbonate (GC) and glycerol were used to treat sugarcane bagasse and the roles of each solvent in deconstructing biomass were determined. Results Pretreatment of sugarcane bagasse at 90°C for only 30 min with acidified GC produced a solid residue having a glucan digestibility of 90% and a glucose yield of 80%, which were significantly higher than a glucan digestibility of 16% and a glucose yield of 15% obtained for bagasse pretreated with acidified ethylene carbonate (EC). Biomass compositional analyses showed that GC pretreatment removed more lignin than EC pretreatment (84% vs 54%). Scanning electron microscopy (SEM) showed that fluffy and size-reduced fibres were produced from GC pretreatment whereas EC pretreatment produced compact particles of reduced size. The maximal glucan digestibility and glucose yield of GC/glycerol systems were about 7% lower than those of EC/ethylene glycol (EG) systems. Replacing up to 50 wt% of GC with glycerol did not negatively affect glucan digestibility and glucose yield. The results from pretreatment of microcrystalline cellulose (MCC) showed that (1) pretreatment with acidified alkylene glycol (AG) alone increased enzymatic digestibility compared to pretreatments with acidified alkylene carbonate (AC) alone and acidified mixtures of AC and AG, (2) pretreatment with acidified GC alone slightly increased, but with acidified EC alone significantly decreased, enzymatic digestibility compared to untreated MCC, and (3) there was a good positive linear correlation of enzymatic digestibility of treated and untreated MCC samples with congo red (CR) adsorption capacity. Conclusions Acidified GC alone was a more effective solvent for pretreatment of sugarcane bagasse than acidified EC alone. The higher glucose yield obtained with GC-pretreated bagasse is possibly due to the presence of one hydroxyl group in the GC molecular structure, resulting in more significant biomass delignification and defibrillation, though both solvent pretreatments reduced bagasse particles to a similar extent. The maximum glucan digestibility of GC/glycerol systems was less than that of EC/EG systems, which is likely attributed to glycerol being less effective than EG in biomass delignification and defibrillation. Acidified AC/AG solvent systems were more effective for pretreatment of lignin-containing biomass than MCC. PMID:24156757

LISA Sources in Milky Way Globular Clusters

NASA Astrophysics Data System (ADS)

Kremer, Kyle; Chatterjee, Sourav; Breivik, Katelyn; Rodriguez, Carl L.; Larson, Shane L.; Rasio, Frederic A.

2018-05-01

We explore the formation of double-compact-object binaries in Milky Way (MW) globular clusters (GCs) that may be detectable by the Laser Interferometer Space Antenna (LISA). We use a set of 137 fully evolved GC models that, overall, effectively match the properties of the observed GCs in the MW. We estimate that, in total, the MW GCs contain ˜21 sources that will be detectable by LISA. These detectable sources contain all combinations of black hole (BH), neutron star, and white dwarf components. We predict ˜7 of these sources will be BH-BH binaries. Furthermore, we show that some of these BH-BH binaries can have signal-to-noise ratios large enough to be detectable at the distance of the Andromeda galaxy or even the Virgo cluster.

LISA Sources in Milky Way Globular Clusters.

PubMed

Kremer, Kyle; Chatterjee, Sourav; Breivik, Katelyn; Rodriguez, Carl L; Larson, Shane L; Rasio, Frederic A

2018-05-11

We explore the formation of double-compact-object binaries in Milky Way (MW) globular clusters (GCs) that may be detectable by the Laser Interferometer Space Antenna (LISA). We use a set of 137 fully evolved GC models that, overall, effectively match the properties of the observed GCs in the MW. We estimate that, in total, the MW GCs contain ∼21 sources that will be detectable by LISA. These detectable sources contain all combinations of black hole (BH), neutron star, and white dwarf components. We predict ∼7 of these sources will be BH-BH binaries. Furthermore, we show that some of these BH-BH binaries can have signal-to-noise ratios large enough to be detectable at the distance of the Andromeda galaxy or even the Virgo cluster.

Inducing microstructural changes in Nafion by incorporating graphitic carbon nitride to enhance the vanadium-blocking effect.

PubMed

Wu, Chunxiao; Lu, Shanfu; Zhang, Jin; Xiang, Yan

2018-03-14

Two-dimensional graphitic carbon nitride (g-C 3 N 4 ) nanosheets are introduced into a Nafion matrix to prepare a 'vanadium-blocking' recast Nafion membrane for vanadium redox flow battery (VRFB) applications. After 0.2 wt% g-C 3 N 4 nanosheets are incorporated, the vanadium ion permeability of the composite membrane decreases from 3.3 × 10 -7 cm 2 min -1 to 3.8 × 10 -9 cm 2 min -1 , which is a reduction of two orders of magnitude in comparison to the pristine recast Nafion membrane. This satisfactory result contributes to the physical blocking effect as well as the Donnan effect from the 2D morphology and functional amino groups of g-C 3 N 4 nanosheets. Notably, this work reveals that the g-C 3 N 4 nanosheets can help reinforce the vanadium-blocking effect by changing the microstructure of Nafion in addition to the well-known effects mentioned above. The g-C 3 N 4 nanosheets induce shrinkage in the original spherical structure of the ion cluster and generate a new lamellar structure. Correspondingly, the amorphous phase of Nafion is interrupted, and the membrane crystallinity is reduced. The VRFB with an optimized composite membrane achieves a high coulombic efficiency of 97% and an energy efficiency of 83% at a current density of 160 mA cm -2 . Meanwhile, the battery exhibited excellent lifetime stability during a 100 charge-discharge cycling test.

Lymphoid organs of neonatal and adult mice preferentially produce active glucocorticoids from metabolites, not precursors.

PubMed

Taves, Matthew D; Plumb, Adam W; Korol, Anastasia M; Van Der Gugten, Jessica Grace; Holmes, Daniel T; Abraham, Ninan; Soma, Kiran K

2016-10-01

Glucocorticoids (GCs) are circulating adrenal steroid hormones that coordinate physiology, especially the counter-regulatory response to stressors. While systemic GCs are often considered immunosuppressive, GCs in the thymus play a critical role in antigen-specific immunity by ensuring the selection of competent T cells. Elevated thymus-specific GC levels are thought to occur by local synthesis, but the mechanism of such tissue-specific GC production remains unknown. Here, we found metyrapone-blockable GC production in neonatal and adult bone marrow, spleen, and thymus of C57BL/6 mice. This production was primarily via regeneration of adrenal metabolites, rather than de novo synthesis from cholesterol, as we found high levels of gene expression and activity of the GC-regenerating enzyme 11β-hydroxysteroid dehydrogenase type 1 (11β-HSD1), but not the GC-synthetic enzyme CYP11B1. Furthermore, incubation with physiological concentrations of GC metabolites (11-dehydrocorticosterone, prednisone) induced 11β-HSD1- and GC receptor-dependent apoptosis (caspase activation) in both T and B cells, showing the functional relevance of local GC regeneration in lymphocyte GC signaling. Local GC production in bone marrow and spleen raises the possibility that GCs play a key role in B cell selection similar to their role in T cell selection. Our results also indicate that local GC production may amplify changes in adrenal GC signaling, rather than buffering against such changes, in the immune system. Copyright © 2016 Elsevier Inc. All rights reserved.

Calgranulin C Has Filariacidal and Filariastatic Activity

PubMed Central

Gottsch, John D.; Eisinger, Steven W.; Liu, Sammy H.; Scott, Alan L.

1999-01-01

The calgranulins are a family of calcium- and zinc-binding proteins produced by neutrophils, monocytes, and other cells. Calgranulins are released during inflammatory responses and have antimicrobial activity. Recently, one of the calgranulins, human calgranulin C (CaGC), has been implicated as an important component of the host responses that limit the parasite burden during filarial nematode infections. The goal of this work was to test the hypothesis that human CaGC has biologic activity against filarial parasites. Brugia malayi microfilariae and adults were exposed in vitro to 0.75 to 100 nM recombinant human CaGC. Recombinant CaGC affected adult and larval parasites in a dose-dependent fashion. Microfilariae were more sensitive to the action of CaGC than were adult parasites. At high levels, CaGC was both macrofilariacidal and microfilariacidal. At lower levels, the percentage of parasites killed was dependent on the level of CaGC in the culture system. The larvae not killed had limited motility. The filariastatic effect of low-level CaGC was reversed when the CaGC was removed from the culture system. Immunohistochemical analysis demonstrated that human CaGC accumulated in the cells of the hypodermis-lateral chord of adult and larval parasites. The antifilarial activity of CaGC was not due to the sequestration of zinc. Thus, the cellular and molecular mechanisms that result in the production and release of CaGC in humans may play a key role in the regulation of filarial parasite numbers. PMID:10569784

Characterization of Aroma-Active Components and Antioxidant Activity Analysis of E-jiao (Colla Corii Asini) from Different Geographical Origins.

PubMed

Zhang, Shan; Xu, Lu; Liu, Yang-Xi; Fu, Hai-Yan; Xiao, Zuo-Bing; She, Yuan-Bin

2018-04-01

E-jiao (Colla Corii Asini, CCA) has been widely used as a healthy food and Chinese medicine. Although authentic CCA is characterized by its typical sweet and neutral fragrance, its aroma components have been rarely investigated. This work investigated the aroma-active components and antioxidant activity of 19 CCAs from different geographical origins. CCA extracts obtained by simultaneous distillation and extraction were analyzed by gas chromatography-mass spectrometry (GC-MS), gas chromatography-olfactometry (GC-O) and sensory analysis. The antioxidant activity of CCAs was determined by ABTS and DPPH assays. A total of 65 volatile compounds were identified and quantified by GC-MS and 23 aroma-active compounds were identified by GC-O and aroma extract dilution analysis. The most powerful aroma-active compounds were identified based on the flavor dilution factor and their contents were compared among the 19 CCAs. Principal component analysis of the 23 aroma-active components showed 3 significant clusters. Canonical correlation analysis between antioxidant assays and the 23 aroma-active compounds indicates strong correlation (r = 0.9776, p = 0.0281). Analysis of aroma-active components shows potential for quality evaluation and discrimination of CCAs from different geographical origins.

Appearance Constrained Semi-Automatic Segmentation from DCE-MRI is Reproducible and Feasible for Breast Cancer Radiomics: A Feasibility Study.

PubMed

Veeraraghavan, Harini; Dashevsky, Brittany Z; Onishi, Natsuko; Sadinski, Meredith; Morris, Elizabeth; Deasy, Joseph O; Sutton, Elizabeth J

2018-03-19

We present a segmentation approach that combines GrowCut (GC) with cancer-specific multi-parametric Gaussian Mixture Model (GCGMM) to produce accurate and reproducible segmentations. We evaluated GCGMM using a retrospectively collected 75 invasive ductal carcinoma with ERPR+ HER2- (n = 15), triple negative (TN) (n = 9), and ER-HER2+ (n = 57) cancers with variable presentation (mass and non-mass enhancement) and background parenchymal enhancement (mild and marked). Expert delineated manual contours were used to assess the segmentation performance using Dice coefficient (DSC), mean surface distance (mSD), Hausdorff distance, and volume ratio (VR). GCGMM segmentations were significantly more accurate than GrowCut (GC) and fuzzy c-means clustering (FCM). GCGMM's segmentations and the texture features computed from those segmentations were the most reproducible compared with manual delineations and other analyzed segmentation methods. Finally, random forest (RF) classifier trained with leave-one-out cross-validation using features extracted from GCGMM segmentation resulted in the best accuracy for ER-HER2+ vs. ERPR+/TN (GCGMM 0.95, expert 0.95, GC 0.90, FCM 0.92) and for ERPR + HER2- vs. TN (GCGMM 0.92, expert 0.91, GC 0.77, FCM 0.83).

The Initial Mass Function of the Arches Cluster

NASA Astrophysics Data System (ADS)

Hosek, Matthew; Lu, Jessica; Anderson, Jay; Ghez, Andrea; Morris, Mark; Do, Tuan; Clarkson, William; Albers, Saundra; Weisz, Daniel

2018-01-01

The Arches star cluster is only 26 pc (in projection) from Sgr A*, the supermassive black hole at the Galactic Center. This young massive cluster allows us to examine the impact of the extreme Galactic Center environment on the stellar Initial Mass Function (IMF). However, measuring the IMF of the Arches is challenging due to the highly variable extinction along the line of sight, which makes it difficult to separate cluster members from the field stars. We use high-precision proper motion and photometric measurements obtained with the Hubble Space Telescope to calculate cluster membership probabilities for stars down to ~2 M_sun out to the outskirts of the cluster (3 pc). In addition, we measure the effective temperatures of a small sample of cluster members in order to calibrate the mass-luminosity relationship using using Keck OSIRS K-band spectroscopy. We forward model these observations to simultaneously constrain the cluster IMF, age, distance, and extinction. We obtain an IMF that is shallower than what is observed locally, with a higher fraction of high-mass stars to low mass stars (i.e., “top-heavy”). We will compare the IMF of the Arches to similar clusters in the Galactic disk and quantify the effect of the GC environment on the star formation process.

Chemical Polymorphism of Essential Oils of Artemisia vulgaris Growing Wild in Lithuania.

PubMed

Judzentiene, Asta; Budiene, Jurga

2018-02-01

Compositional variability of mugwort (Artemisia vulgaris L.) essential oils has been investigated in the study. Plant material (over ground parts at full flowering stage) was collected from forty-four wild populations in Lithuania. The oils from aerial parts were obtained by hydrodistillation and analyzed by GC(FID) and GC/MS. In total, up to 111 components were determined in the oils. As the major constituents were found: sabinene, 1,8-cineole, artemisia ketone, both thujone isomers, camphor, cis-chrysanthenyl acetate, davanone and davanone B. The compositional data were subjected to statistical analysis. The application of PCA (Principal Component Analysis) and AHC (Agglomerative Hierarchical Clustering) allowed grouping the oils into six clusters. AHC permitted to distinguish an artemisia ketone chemotype, which, to the best of our knowledge, is very scarce. Additionally, two rare cis-chrysanthenyl acetate and sabinene oil types were determined for the plants growing in Lithuania. Besides, davanone was found for the first time as a principal component in mugwort oils. The performed study revealed significant chemical polymorphism of essential oils in mugwort plants native to Lithuania; it has expanded our chemotaxonomic knowledge both of A. vulgaris species and Artemisia genus. © 2018 Wiley-VHCA AG, Zurich, Switzerland.

Biogeographic variation of foliar n-alkanes of Juniperus communis var. saxatilis Pallas from the Balkans.

PubMed

Rajčević, Nemanja; Janaćković, Pedja; Dodoš, Tanja; Tešević, Vele; Marin, Petar D

2014-12-01

The composition of the epicuticular n-alkanes isolated from the leaves of ten populations of Juniperus communis L. var. saxatilis Pallas from central (continental) and western (coastal) areas of the Balkan Peninsula was characterized by GC-FID and GC/MS analyses. In the leaf waxes, 14 n-alkane homologues with chain-lengths ranging from C22 to C35 were identified. All samples were dominated by n-tritriacontane (C33 ), but differences in two other dominant n-alkanes allowed separating the coastal from the continental populations. Several statistical methods (ANOVA, principal component, discriminant, and cluster analyses as well as the Mantel test) were deployed to analyze the diversity and variability of the epicuticular-leaf-n-alkane patterns of the ten natural populations of J. communis var. saxatilis and their relation to different geographic and bioclimatic parameters. Cluster analysis showed a high correlation of the leaf-n-alkane patterns with the geographical distribution of the investigated samples, differentiating the coastal from the continental populations of this taxon. Several bioclimatic parameters related to aridity were highly correlated with this differentiation. Copyright © 2014 Verlag Helvetica Chimica Acta AG, Zürich.

The CN–CH Positive Correlation in the Globular Cluster NGC 5286

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lim, Dongwook; Hong, Seungsoo; Lee, Young-Wook, E-mail: dwlim@yonsei.ac.kr, E-mail: ywlee2@yonsei.ac.kr

We performed low-resolution spectroscopy of the red giant stars in the Galactic globular cluster (GC) NGC 5286, which is known to show intrinsic heavy element abundance variations. We found that the observed stars in this GC are clearly divided into three subpopulations by CN index (CN-weak, CN-intermediate, and CN-strong). The CN-strong stars are also enhanced in the calcium HK′ (7.4 σ ) and CH (5.1 σ ) indices, while the CN-intermediate stars show no significant difference in the strength of the HK′ index from the CN-weak stars. From the comparison with high-resolution spectroscopic data, we found that the CN- andmore » HK′-strong stars are also enhanced in the abundances of Fe and s -process elements. It appears, therefore, that these stars are later-generation stars affected by some supernova enrichment in addition to the asymptotic giant branch ejecta. In addition, unlike normal GCs, sample stars in NGC 5286 show the CN–CH positive correlation, strengthening our previous suggestion that this positive correlation is only discovered in GCs with heavy element abundance variations, such as M22 and NGC 6273.« less

A view of the H-band light-element chemical patterns in globular clusters under the AGB self-enrichment scenario

NASA Astrophysics Data System (ADS)

Dell'Agli, F.; García-Hernández, D. A.; Ventura, P.; Mészáros, Sz; Masseron, T.; Fernández-Trincado, J. G.; Tang, B.; Shetrone, M.; Zamora, O.; Lucatello, S.

2018-04-01

We discuss the self-enrichment scenario by asymptotic giant branch (AGB) stars for the formation of multiple populations in globular clusters (GCs) by analysing data set of giant stars observed in nine Galactic GCs, covering a wide range of metallicities and for which the simultaneous measurements of C, N, O, Mg, Al, and Si are available. To this aim, we calculated six sets of AGB models, with the same chemical composition as the stars belonging to the first generation of each GC. We find that the AGB yields can reproduce the set of observations available, not only in terms of the degree of contamination shown by stars in each GC but, more important, also the observed trend with metallicity, which agrees well with the predictions from AGB evolution modelling. While further observational evidences are required to definitively fix the main actors in the pollution of the interstellar medium from which new generation of stars formed in GCs, the present results confirm that the gas ejected by stars of mass in the range 4 M_{⊙} ≤ M ≤ 8 M_{⊙} during the AGB phase share the same chemical patterns traced by stars in GCs.

Solar promoted azo dye degradation and energy production in the bio-photoelectrochemical system with a g-C3N4/BiOBr heterojunction photocathode

NASA Astrophysics Data System (ADS)

Hou, Yanping; Gan, Yuanyuan; Yu, Zebin; Chen, Xixi; Qian, Lun; Zhang, Boge; Huang, Lirong; Huang, Jun

2017-12-01

In this study, a single-chamber bio-photoelectrochemical system (BPES), integrating advantages of bioelectrochemical system and photocatalysis process, is developed using a g-C3N4/BiOBr heterojunction photocathode for methyl orange (MO) degradation and simultaneous energy recovery. Photocatalytic activities of g-C3N4/BiOBr, g-C3N4 and BiOBr are characterized by UV-vis diffuse reflectance spectra (UV-vis DRS) and Photoluminescence (PL) spectra; and electrochemical activities of photocathodes are examined by linear sweep voltammetry (LSV) and electrochemical impedance spectroscopy (EIS). Results show that with an applied voltage of 0.8 V and under simulated solar irradiation, MO decolorization with g-C3N4/BiOBr photocathode reaches 97.8% within 4 h, higher than those with g-C3N4 (85.3%) and BiOBr (87.3%) photocathodes. Likewise, higher hydrogen production rate (143.8 L m-3d-1) is observed using g-C3N4/BiOBr photocathode; while values for g-C3N4 and BiOBr photocathodes are 124.3 L m-3d-1 and 117.1 L m-3d-1, respectively. PL and EIS reveal that superior performance of g-C3N4/BiOBr photocathode can be attributed to more efficient separation of photogenerated electron-hole pairs, lower resistance and better charge transfer. Synergistic effect occurs among biological, electrochemical and photocatalytic processes in illuminated BPES for MO removal. Photocathode optimization and system stability evaluation are conducted. This study demonstrates that the BPES holds great potential for efficient refractory organics degradation and energy production.

Graphitic carbon nitride based nanocomposites: a review

NASA Astrophysics Data System (ADS)

Zhao, Zaiwang; Sun, Yanjuan; Dong, Fan

2014-11-01

Graphitic carbon nitride (g-C3N4), as an intriguing earth-abundant visible light photocatalyst, possesses a unique two-dimensional structure, excellent chemical stability and tunable electronic structure. Pure g-C3N4 suffers from rapid recombination of photo-generated electron-hole pairs resulting in low photocatalytic activity. Because of the unique electronic structure, the g-C3N4 could act as an eminent candidate for coupling with various functional materials to enhance the performance. According to the discrepancies in the photocatalytic mechanism and process, six primary systems of g-C3N4-based nanocomposites can be classified and summarized: namely, the g-C3N4 based metal-free heterojunction, the g-C3N4/single metal oxide (metal sulfide) heterojunction, g-C3N4/composite oxide, the g-C3N4/halide heterojunction, g-C3N4/noble metal heterostructures, and the g-C3N4 based complex system. Apart from the depiction of the fabrication methods, heterojunction structure and multifunctional application of the g-C3N4-based nanocomposites, we emphasize and elaborate on the underlying mechanisms in the photocatalytic activity enhancement of g-C3N4-based nanocomposites. The unique functions of the p-n junction (semiconductor/semiconductor heterostructures), the Schottky junction (metal/semiconductor heterostructures), the surface plasmon resonance (SPR) effect, photosensitization, superconductivity, etc. are utilized in the photocatalytic processes. Furthermore, the enhanced performance of g-C3N4-based nanocomposites has been widely employed in environmental and energetic applications such as photocatalytic degradation of pollutants, photocatalytic hydrogen generation, carbon dioxide reduction, disinfection, and supercapacitors. This critical review ends with a summary and some perspectives on the challenges and new directions in exploring g-C3N4-based advanced nanomaterials.

Preliminary pharmacology of galactosylated chitosan/5-fluorouracil nanoparticles and its inhibition of hepatocellular carcinoma in mice

PubMed Central

Cheng, Mingrong; Liu, Zheng; Wan, Tao; He, Bing; Zha, Bingbing; Han, Jiang; Chen, Houxiang; Yang, Fengxiao; Li, Qing; Wang, Wei; Xu, Hongzhi; Ye, Tao

2012-01-01

Biodegradable polymer nanoparticle drug delivery systems are characterized by targeted drug delivery, improved pharmacokinetic and biodistribution, enhanced drug stability and lowered side effects; these drug delivery systems are widely used for delivery of cytotoxic agents. The galactosylated chitosan (GC)/5-fluorouracil (5-FU) nanoparticle is a nanomaterial made by coupling GC, a polymer known to have the advantages described above, and 5-FU. The GC/5-FU nanoparticle is a sustained release system, it was showed that the peak time, half-life time, mean residence time (MRT) and area of under curve (AUC) of GC/5-FU were longer or more than those of the 5-FU group, but the maximum concentration (Cmax) was lower. The distribution of GC/5-FU in vivo revealed the greatest accumulation in the hepatic cancer tissues, and the hepatic cell was the target of the nanoparticles. Toxicology research showed that the toxicity of GC-5-FU was lower than that of 5-FU in mice. In vivo experiments showed that GC/5-FU can significantly inhibit tumor growth in an orthotropic liver cancer mouse model. GC/5-FU treatment can significantly lower the tumor weight and increase the survival time of mice when compared with 5-FU treatment alone. Flow cytometry and the TUNEL assay revealed that compared with 5-FU, GC/5-FU caused higher rates of G0-G1 arrest and apoptosis in hepatic cancer cells. PMID:22954702

Measurement of free glucocorticoids: quantifying corticosteroid-binding globulin binding affinity and its variation within and among mammalian species.

PubMed

Delehanty, Brendan; Hossain, Sabrina; Jen, Chao Ching; Crawshaw, Graham J; Boonstra, Rudy

2015-01-01

Plasma glucocorticoids (GCs) are commonly used as measures of stress in wildlife. A great deal of evidence indicates that only free GC (GC not bound by the specific binding protein, corticosteroid-binding globulin, CBG) leaves the circulation and exerts biological effects on GC-sensitive tissues. Free hormone concentrations are difficult to measure directly, so researchers estimate free GC using two measures: the binding affinity and the binding capacity in plasma. We provide an inexpensive saturation binding method for calculating the binding affinity (equilibrium dissociation constant, K d) of CBG that can be run without specialized laboratory equipment. Given that other plasma proteins, such as albumin, also bind GCs, the method compensates for this non-specific binding. Separation of bound GC from free GC was achieved with dextran-coated charcoal. The method provides repeatable estimates (12% coefficient of variation in the red squirrel, Tamiasciurus hudsonicus), and there is little evidence of inter-individual variation in K d (range 2.0-7.3 nM for 16 Richardson's ground squirrels, Urocitellus richardsonii). The K d values of 28 mammalian species we assessed were mostly clustered around a median of 4 nM, but five species had values between 13 and 61 nM. This pattern may be distinct from birds, for which published values are more tightly distributed (1.5-5.1 nM). The charcoal separation method provides a reliable and robust method for measuring the K d in a wide range of species. It uses basic laboratory equipment to provide rapid results at very low cost. Given the importance of CBG in regulating the biological activity of GCs, this method is a useful tool for physiological ecologists.

Codon usage patterns in Nematoda: analysis based on over 25 million codons in thirty-two species

PubMed Central

2006-01-01

Background Codon usage has direct utility in molecular characterization of species and is also a marker for molecular evolution. To understand codon usage within the diverse phylum Nematoda, we analyzed a total of 265,494 expressed sequence tags (ESTs) from 30 nematode species. The full genomes of Caenorhabditis elegans and C. briggsae were also examined. A total of 25,871,325 codons were analyzed and a comprehensive codon usage table for all species was generated. This is the first codon usage table available for 24 of these organisms. Results Codon usage similarity in Nematoda usually persists over the breadth of a genus but then rapidly diminishes even within each clade. Globodera, Meloidogyne, Pristionchus, and Strongyloides have the most highly derived patterns of codon usage. The major factor affecting differences in codon usage between species is the coding sequence GC content, which varies in nematodes from 32% to 51%. Coding GC content (measured as GC3) also explains much of the observed variation in the effective number of codons (R = 0.70), which is a measure of codon bias, and it even accounts for differences in amino acid frequency. Codon usage is also affected by neighboring nucleotides (N1 context). Coding GC content correlates strongly with estimated noncoding genomic GC content (R = 0.92). On examining abundant clusters in five species, candidate optimal codons were identified that may be preferred in highly expressed transcripts. Conclusion Evolutionary models indicate that total genomic GC content, probably the product of directional mutation pressure, drives codon usage rather than the converse, a conclusion that is supported by examination of nematode genomes. PMID:26271136

Modulation of cGMP in Heart Failure

PubMed Central

Boerrigter, Guido; Lapp, Harald; Burnett, John C.

2009-01-01

Heart failure (HF) is a common disease that continues to be associated with high morbidity and mortality warranting novel therapeutic strategies. Cyclic guanosine monophosphate (cGMP) is the second messenger of several important signaling pathways based on distinct guanylate cyclases (GCs) in the cardiovascular system. Both the nitric oxide/soluble GC (NO/sGC) as well as the natriuretic peptide/GC-A (NP/GC-A) systems are disordered in HF, providing a rationale for their therapeutic augmentation. Soluble GC activation with conventional nitrovasodilators has been used for more than a century but is associated with cGMP-independent actions and the development of tolerance, actions which novel NO-independent sGC activators now in clinical development lack. Activation of GC-A by administration of naturally occurring or designer natriuretic peptides is an emerging field, as is the inhibition of enzymes that degrade endogenous NPs. Finally, inhibition of cGMP-degrading phosphodiesterases, particularly phosphodiesterase 5 provides an additional strategy to augment cGMP-signaling. PMID:19089342

Membrane guanylate cyclase, a multimodal transduction machine: history, present, and future directions

PubMed Central

Sharma, Rameshwar K.; Duda, Teresa

2014-01-01

A sequel to these authors' earlier comprehensive reviews which covered the field of mammalian membrane guanylate cyclase (MGC) from its origin to the year 2010, this article contains 13 sections. The first is historical and covers MGC from the year 1963–1987, summarizing its colorful developmental stages from its passionate pursuit to its consolidation. The second deals with the establishment of its biochemical identity. MGC becomes the transducer of a hormonal signal and founder of the peptide hormone receptor family, and creates the notion that hormone signal transduction is its sole physiological function. The third defines its expansion. The discovery of ROS-GC subfamily is made and it links ROS-GC with the physiology of phototransduction. Sections ROS-GC, a Ca2+-Modulated Two Component Transduction System to Migration Patterns and Translations of the GCAP Signals Into Production of Cyclic GMP are Different cover its biochemistry and physiology. The noteworthy events are that augmented by GCAPs, ROS-GC proves to be a transducer of the free Ca2+ signals generated within neurons; ROS-GC becomes a two-component transduction system and establishes itself as a source of cyclic GMP, the second messenger of phototransduction. Section ROS-GC1 Gene Linked Retinal Dystrophies demonstrates how this knowledge begins to be translated into the diagnosis and providing the molecular definition of retinal dystrophies. Section Controlled By Low and High Levels of [Ca2+]i, ROS-GC1 is a Bimodal Transduction Switch discusses a striking property of ROS-GC where it becomes a “[Ca2+]i bimodal switch” and transcends its signaling role in other neural processes. In this course, discovery of the first CD-GCAP (Ca2+-dependent guanylate cyclase activator), the S100B protein, is made. It extends the role of the ROS-GC transduction system beyond the phototransduction to the signaling processes in the synapse region between photoreceptor and cone ON-bipolar cells; in section Ca2+-Modulated Neurocalcin δ ROS-GC1 Transduction System Exists in the Inner Plexiform Layer (IPL) of the Retinal Neurons, discovery of another CD-GCAP, NCδ, is made and its linkage with signaling of the inner plexiform layer neurons is established. Section ROS-GC Linkage With Other Than Vision-Linked Neurons discusses linkage of the ROS-GC transduction system with other sensory transduction processes: Pineal gland, Olfaction and Gustation. In the next, section Evolution of a General Ca2+-Interlocked ROS-GC Signal Transduction Concept in Sensory and Sensory-Linked Neurons, a theoretical concept is proposed where “Ca2+-interlocked ROS-GC signal transduction” machinery becomes a common signaling component of the sensory and sensory-linked neurons. Closure to the review is brought by the conclusion and future directions. PMID:25071437

[Comparative analysis of clustered regularly interspaced short palindromic repeats (CRISPRs) loci in the genomes of halophilic archaea].

PubMed

Zhang, Fan; Zhang, Bing; Xiang, Hua; Hu, Songnian

2009-11-01

Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) is a widespread system that provides acquired resistance against phages in bacteria and archaea. Here we aim to genome-widely analyze the CRISPR in extreme halophilic archaea, of which the whole genome sequences are available at present time. We used bioinformatics methods including alignment, conservation analysis, GC content and RNA structure prediction to analyze the CRISPR structures of 7 haloarchaeal genomes. We identified the CRISPR structures in 5 halophilic archaea and revealed a conserved palindromic motif in the flanking regions of these CRISPR structures. In addition, we found that the repeat sequences of large CRISPR structures in halophilic archaea were greatly conserved, and two types of predicted RNA secondary structures derived from the repeat sequences were likely determined by the fourth base of the repeat sequence. Our results support the proposal that the leader sequence may function as recognition site by having palindromic structures in flanking regions, and the stem-loop secondary structure formed by repeat sequences may function in mediating the interaction between foreign genetic elements and CAS-encoded proteins.

High-Throughput Characterization of Cascade type I-E CRISPR Guide Efficacy Reveals Unexpected PAM Diversity and Target Sequence Preferences.

PubMed

Fu, Becky Xu Hua; Wainberg, Michael; Kundaje, Anshul; Fire, Andrew Z

2017-08-01

Interactions between Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR) RNAs and CRISPR-associated (Cas) proteins form an RNA-guided adaptive immune system in prokaryotes. The adaptive immune system utilizes segments of the genetic material of invasive foreign elements in the CRISPR locus. The loci are transcribed and processed to produce small CRISPR RNAs (crRNAs), with degradation of invading genetic material directed by a combination of complementarity between RNA and DNA and in some cases recognition of adjacent motifs called PAMs (Protospacer Adjacent Motifs). Here we describe a general, high-throughput procedure to test the efficacy of thousands of targets, applying this to the Escherichia coli type I-E Cascade (CRISPR-associated complex for antiviral defense) system. These studies were followed with reciprocal experiments in which the consequence of CRISPR activity was survival in the presence of a lytic phage. From the combined analysis of the Cascade system, we found that (i) type I-E Cascade PAM recognition is more expansive than previously reported, with at least 22 distinct PAMs, with many of the noncanonical PAMs having CRISPR-interference abilities similar to the canonical PAMs; (ii) PAM positioning appears precise, with no evidence for tolerance to PAM slippage in interference; and (iii) while increased guanine-cytosine (GC) content in the spacer is associated with higher CRISPR-interference efficiency, high GC content (>62.5%) decreases CRISPR-interference efficiency. Our findings provide a comprehensive functional profile of Cascade type I-E interference requirements and a method to assay spacer efficacy that can be applied to other CRISPR-Cas systems. Copyright © 2017 by the Genetics Society of America.

Evaluation of selected interleukins in patients with different gastric neoplasms: a preliminary report.

PubMed

Madej-Michniewicz, Anna; Budkowska, Marta; Sałata, Daria; Dołęgowska, Barbara; Starzyńska, Teresa; Błogowski, Wojciech

2015-10-21

Abnormal interactions between cytokines may be an overlooked mechanism linking the development of different types of gastric neoplasms. In this study a comprehensive analysis of the systemic levels of interleukins (IL-1,IL-6, IL-8,IL-10 and IL-12) was performed in 75 patients with different gastric neoplasms (cancer, gastrointestinal stromal tumors, neuroendocrine neoplasms, lymphomas) and 40 healthy volunteers. Patients with gastric cancer (GC) have significantly higher IL-6 levels, and lower IL-8 and IL-10 concentrations, in comparison to controls and patients with other gastric neoplasms. Analogous results were observed in terms of IL-6/IL-8 and IL-6/IL-10 ratios, whose values were also higher in GC patients. In GC patients no associations were detected between the systemic levels/values of interleukins (ratios) and TNM staging. IL-6, IL-10, IL-6/IL-8 and IL-6/IL-10 ratios appeared to hold diagnostic potential in confirming/excluding the presence of GC. Their sensitivity/specificity in GC detection/exclusion was approximately 54-72%. In conclusion, disturbed systemic biochemical balance in multiple interleukins exists at the earliest stages of and appears to be specific to GC. The interleukin ratios proposed here seem to be more promising indicators of GC in humans than direct systemic levels of interleukins, and probably possess the potential to be applied as a supporting factor for techniques routinely used.

Evaluation of selected interleukins in patients with different gastric neoplasms: a preliminary report

PubMed Central

Madej-Michniewicz, Anna; Budkowska, Marta; Sałata, Daria; Dołęgowska, Barbara; Starzyńska, Teresa; Błogowski, Wojciech

2015-01-01

Abnormal interactions between cytokines may be an overlooked mechanism linking the development of different types of gastric neoplasms. In this study a comprehensive analysis of the systemic levels of interleukins (IL-1,IL-6, IL-8,IL-10 and IL-12) was performed in 75 patients with different gastric neoplasms (cancer, gastrointestinal stromal tumors, neuroendocrine neoplasms, lymphomas) and 40 healthy volunteers. Patients with gastric cancer (GC) have significantly higher IL-6 levels, and lower IL-8 and IL-10 concentrations, in comparison to controls and patients with other gastric neoplasms. Analogous results were observed in terms of IL-6/IL-8 and IL-6/IL-10 ratios, whose values were also higher in GC patients. In GC patients no associations were detected between the systemic levels/values of interleukins (ratios) and TNM staging. IL-6, IL-10, IL-6/IL-8 and IL-6/IL-10 ratios appeared to hold diagnostic potential in confirming/excluding the presence of GC. Their sensitivity/specificity in GC detection/exclusion was approximately 54–72%. In conclusion, disturbed systemic biochemical balance in multiple interleukins exists at the earliest stages of and appears to be specific to GC. The interleukin ratios proposed here seem to be more promising indicators of GC in humans than direct systemic levels of interleukins, and probably possess the potential to be applied as a supporting factor for techniques routinely used. PMID:26486258

Benefit of the Use of GCxGC/MS Profiles for 1D GC/MS Data Treatment Illustrated by the Analysis of Pyrolysis Products from East Asian Handmade Papers

NASA Astrophysics Data System (ADS)

Han, Bin; Lob, Silvia; Sablier, Michel

2018-06-01

In this study, we report the use of pyrolysis-GCxGC/MS profiles for an optimized treatment of data issued from pyrolysis-GC/MS combined with the automatic deconvolution software Automated Mass Spectral Deconvolution and Identification System (AMDIS). The method was illustrated by the characterization of marker compounds of East Asian handmade papers through the examination of pyrolysis-GCxGC/MS data to get information which was used for manually identifying low concentrated and co-eluting compounds in 1D GC/MS data. The results showed that the merits of a higher separation power for co-eluting compounds and a better sensitivity for low concentration compounds offered by a GCxGC system can be used effectively for AMDIS 1D GC/MS data treatment: (i) the compound distribution in pyrolysis-GCxGC/MS profiles can be used as "peak finder" for manual check of low concentration and co-eluting compound identification in 1D GC/MS data, and (ii) pyrolysis-GCxGC/MS profiles can provide better quality mass spectra with observed higher match factors in the AMDIS automatic match process. The combination of 2D profile with AMDIS was shown to contribute efficiently to a better characterization of compound profiles in the chromatograms obtained by 1D analysis in focusing on the mass spectral identification. [Figure not available: see fulltext.

The Observational and Theoretical Tidal Radii of Globular Clusters in M87

NASA Astrophysics Data System (ADS)

Webb, Jeremy J.; Sills, Alison; Harris, William E.

2012-02-01

Globular clusters have linear sizes (tidal radii) which theory tells us are determined by their masses and by the gravitational potential of their host galaxy. To explore the relationship between observed and expected radii, we utilize the globular cluster population of the Virgo giant M87. Unusually deep, high signal-to-noise images of M87 are used to measure the effective and limiting radii of approximately 2000 globular clusters. To compare with these observations, we simulate a globular cluster population that has the same characteristics as the observed M87 cluster population. Placing these simulated clusters in the well-studied tidal field of M87, the orbit of each cluster is solved and the theoretical tidal radius of each cluster is determined. We compare the predicted relationship between cluster size and projected galactocentric distance to observations. We find that for an isotropic distribution of cluster velocities, theoretical tidal radii are approximately equal to observed limiting radii for R gc < 10 kpc. However, the isotropic simulation predicts a steep increase in cluster size at larger radii, which is not observed in large galaxies beyond the Milky Way. To minimize the discrepancy between theory and observations, we explore the effects of orbital anisotropy on cluster sizes, and suggest a possible orbital anisotropy profile for M87 which yields a better match between theory and observations. Finally, we suggest future studies which will establish a stronger link between theoretical tidal radii and observed radii.

Biomark/Organic Analysis with Time-of-Flight Mass Spectrometry

NASA Technical Reports Server (NTRS)

Waite, J. Hunter, Jr.

2004-01-01

The concept of a Comprehensive 2-Dimensional Gas Chromatography coupled with Time-of-Flight Mass Spectrometry (GCxGC-TOWS) for the analysis of organic compounds has been proven with commercially available instrumentation (LECO Corp). The performance of a GCxGC instrument has been characterized in various stages using two independent breadboard systems. The GCxGC separation systems, including the thermal modulator, have been miniaturized to the size of a benchtop configuration. One breadboard system employs a Flame Ionization Detector (FID), whereas the second breadboard system employs a Time-of-Fight mass spectrometer (TOFWS) as a detection system.

A populous intermediate-age open cluster and evidence of an embedded cluster among the FSR globular cluster candidates

NASA Astrophysics Data System (ADS)

Bica, E.; Bonatto, C.

2008-03-01

We study the nature of the globular cluster (GC) candidates FSR 1603 and FSR1755 selected from the catalogue of Froebrich, Scholz & Raftery. Their properties are investigated with Two-Micron All-Sky Survey field-star decontaminated photometry, which is used to build colour-magnitude diagrams (CMDs) and stellar radial density profiles. FSR1603 has the open cluster Ruprecht 101 as optical counterpart, and we show it to be a massive intermediate-age cluster. Relevant parameters of FSR1603 are the age ~1Gyr, distance from the Sun dsolar ~ 2.7kpc, Galactocentric distance RGC ~ 6.4kpc, core radius RC ~ 1.1pc, mass function slope χ ~ 1.8, observed stellar mass (for stars with mass in the range 1.27 <= m <= 2.03Msolar) Mobs ~ 500Msolar and a total (extrapolated to m = 0.08Msolar) stellar mass Mtot ~ 2300Msolar. FSR1755, on the other hand, is not a populous cluster. It may be a sparse young cluster embedded in the HII region Sh2-3, subject to an absorption AV ~ 4.1, located at dsolar ~ 1.3kpc. Important field-star contamination, spatially variable heavy dust obscuration, even in Ks, and gas emission characterize its field. A nearly vertical, sparse blue stellar sequence shows up in the CMDs.

Characterization of oils and fats by 1H NMR and GC/MS fingerprinting: classification, prediction and detection of adulteration.

PubMed

Fang, Guihua; Goh, Jing Yeen; Tay, Manjun; Lau, Hiu Fung; Li, Sam Fong Yau

2013-06-01

The correct identification of oils and fats is important to consumers from both commercial and health perspectives. Proton nuclear magnetic resonance ((1)H NMR) spectroscopy, gas chromatography-mass spectrometry (GC/MS) fingerprinting and chemometrics were employed successfully for the quality control of oils and fats. Principal component analysis (PCA) of both techniques showed group clustering of 14 types of oils and fats. Partial least squares discriminant analysis (PLS-DA) and orthogonal projections to latent structures discriminant analysis (OPLS-DA) using GC/MS data had excellent classification sensitivity and specificity compared to models using NMR data. Depending on the availability of the instruments, data from either technique can effectively be applied for the establishment of an oils and fats database to identify unknown samples. Partial least squares (PLS) models were successfully established for the detection of as low as 5% of lard and beef tallow spiked into canola oil, thus illustrating possible applications in Islamic and Jewish countries. Copyright © 2012 Elsevier Ltd. All rights reserved.

Injectable visible light-cured glycol chitosan hydrogels with controlled release of anticancer drugs for local cancer therapy in vivo: a feasible study.

PubMed

Hyun, Hoon; Park, Min Ho; Lim, Wonbong; Kim, So Yeon; Jo, Danbi; Jung, Jin Seok; Jo, Gayoung; Um, Sewook; Lee, Deok-Won; Yang, Dae Hyeok

2018-05-11

Currently available chemotherapy is associated with serious side effects, and therefore novel drug delivery systems (DDSs) are required to specifically deliver anticancer drugs to targeted sites. In this study, we evaluated the feasibility of visible light-cured glycol chitosan (GC) hydrogels with controlled release of doxorubicin⋅hydrochloride (DOX⋅HCl) as local DDSs for effective cancer therapy in vivo. The storage modulus of the hydrogel precursor solutions was increased as a function of visible light irradiation time. In addition, the swelling ratio of the hydrogel irradiated for 10 s (GC 10 /DOX) was greater than in 60 s (GC 60 /DOX). In vitro release test showed that DOX was rapidly released in GC 10 /DOX compared with GC 60 /DOX due to the density of cross-linking. In vitro and in vivo tests including cell viability and measurement of tumor volume showed that the local treatment of GC 10 /DOX yielded substantially greater antitumor effect compared with that of GC 60 /DOX. Therefore, the visible light-cured GC hydrogel system may exhibit clinical potential as a local DDS of anticancer drugs with controlled release, by modulating cross-linking density.

Gas chromatography/atmospheric pressure chemical ionization/mass spectrometry for the analysis of organochlorine pesticides and polychlorinated biphenyls in human serum.

PubMed

Geng, Dawei; Jogsten, Ingrid Ericson; Dunstan, Jody; Hagberg, Jessika; Wang, Thanh; Ruzzin, Jerome; Rabasa-Lhoret, Rémi; van Bavel, Bert

2016-07-01

A method using a novel atmospheric pressure chemical ionization source for coupling gas chromatography (GC/APCI) to triple quadrupole mass spectrometry (MS/MS) for the determination of organochlorine pesticides (OCPs) and polychlorinated biphenyls (PCBs) regulated by the Stockholm Convention is presented. One microliter injection of a six-point calibration curve of native PCBs and OCPs, ranging from 0.04 to 300pg/μL, was performed. The relative standard deviation (RSD) of the relative response factors (RRFs) was less than 15% with a coefficient of determination (r(2))>0.995. Meanwhile, two calibration solutions (CS), CS 2 (0.4pg/μL) and CS 3 (4pg/μL) were analyzed to study the repeatability calculated for both area and RRFs. The RSD for RRF ranged from 3.1 to 16% and 3.6 to 5.5% for CS 2 and CS 3, respectively. The limits of detection (LOD) determined by peak-to-peak signal-to-noise ratio (S/N) of 3 were compared between the GC/APCI/MS/MS and a GC coupled to high resolution mass spectrometry (GC/HRMS) system. GC/APCI/MS/MS resulted in lower LOD for most of the compounds, except for PCB#74, cis-chlordane and trans-chlordane. GC/APCI/MS/MS and GC/HRMS were also compared by performing analysis on 75 human serum samples together with eight QA/QC serum samples. The comparison between GC/APCI/MS/MS system and GC/HRMS system for 16 of the targeted compounds was carried out. No statistically significant difference was discovered. Due to increased sensitivity and user friendly operation under atmospheric pressure, GC/APCI/MS/MS is a powerful alternative technique that can easily meet the specification of GC/HRMS. Copyright © 2016 Elsevier B.V. All rights reserved.

Pilot study comparing the Childhood Arthritis & Rheumatology Research Alliance (CARRA) systemic Juvenile Idiopathic Arthritis Consensus Treatment Plans.

PubMed

Kimura, Yukiko; Grevich, Sriharsha; Beukelman, Timothy; Morgan, Esi; Nigrovic, Peter A; Mieszkalski, Kelly; Graham, T Brent; Ibarra, Maria; Ilowite, Norman; Klein-Gitelman, Marisa; Onel, Karen; Prahalad, Sampath; Punaro, Marilynn; Ringold, Sarah; Toib, Dana; Van Mater, Heather; Weiss, Jennifer E; Weiss, Pamela F; Schanberg, Laura E

2017-04-11

To assess the feasibility of studying the comparative effectiveness of the Childhood Arthritis and Rheumatology Research Alliance (CARRA) consensus treatment plans (CTPs) for systemic Juvenile Idiopathic Arthritis (JIA) using an observational registry. Untreated systemic JIA patients enrolled in the CARRA Registry were begun on one of 4 CTPs chosen by the treating physician and patient/family (glucocorticoid [GC] alone; methotrexate [MTX] ± GC; IL1 inhibitor [IL1i] ± GC; IL6 inhibitor [IL6i] ± GC). The primary outcome of clinical inactive disease (CID) without current GC use was assessed at 9 months. clinicaltrials.gov NCT01697254; first registered 9/28/12 (retrospectively enrolled). Thirty patients were enrolled at 13 sites; eight patients were started on a non-biologic CTP (2 GC, 6 MTX) and 22 patients on a biologic CTP (12 IL1i, 10 IL6i) at disease onset. Demographic and disease features were similar between CTP groups. CTP choice appeared to segregate by site preference. CID off GC was achieved by 37% (11 of 30) including 11/22 (50%) starting a biologic CTP compared to 0/8 starting a non-biologic CTP (p = 0.014). There were four serious adverse events: two infections, one appendicitis and one macrophage activation syndrome. The CARRA systemic JIA CTP pilot study demonstrated successful implementation of CTPs using the CARRA registry infrastructure. Having demonstrated feasibility, a larger study using CTP response to better determine the relative effectiveness of treatments for new-onset systemic JIA is now underway.

Using Blue Stragglers to Predict Retained Black Hole Population in Globular Clusters

NASA Astrophysics Data System (ADS)

Hermanek, Keith; Chatterjee, Sourav; Rasio, Frederic

2018-01-01

Large numbers of black holes (BHs) are expected to form in massive star clusters typical of the globular clusters (GCs). Sophisticated theoretical models suggest that many of these BHs can be retained in present-day GCs. Observations have also identified several BH candidates in Galactic and extragalactic GCs (e.g., Macarone et al. 2007; Irwin et al. 2010; Strader et al. 2012; Chomiuk et al. 2013; Miller-Jones et al. 2014). It has also been shown that high-mass and high-density clusters such as GCs are efficient factories of merging binary BHs similar to those observed by the LIGO observatories (Abbott et al. 2016a,b,c,d,e; Rodriguez et al. 2016). Understanding the formation rate and properties of binary BHs are dependent on a detailed understanding of how the BHs dynamically evolve within GCs. Nevertheless, directly detecting BHs in GCs is extremely challenging; BHs only in binaries with limited configurations can be directly detected by the detection of gravitational wave, X-ray, or radio emissions. We propose an indirect of inferring the number of undetected retained BHs in a GC by investigating the dynamical effects of a large number of BHs on the production of other tracer populations such as Blue Straggler Stars (BSS). Using a large grid of detailed GC models we show that there is a clear anti-correlation between the number of BSS in a cluster and the number of retained BHs. Being the most massive species, large numbers of retained BHs will dominate the core of the cluster as a result of mass-segregation driving away other low-mass species such as main-sequence stars from central high-density regions. BSS are expected to form from physical collisions between main-sequence (MS) stars mediated by binary encounters (e.g., Chatterjee et al. 2013) in cores of GCs. Production of BSS by collisions or mass transfer channels are suppressed if a large number of retained BHs in a cluster restrict the number of MS stars in the core. Extensive observational data exist on the number and radial distribution of BSS in GCs. Thus, this anti-correlation between the number of retained BHs and the number of BSS, once carefully calibrated by theoretical models, can be used to infer the population of undetected BHs in GCs.

Fast Geometric Consensus Approach for Protein Model Quality Assessment

PubMed Central

Adamczak, Rafal; Pillardy, Jaroslaw; Vallat, Brinda K.

2011-01-01

Abstract Model quality assessment (MQA) is an integral part of protein structure prediction methods that typically generate multiple candidate models. The challenge lies in ranking and selecting the best models using a variety of physical, knowledge-based, and geometric consensus (GC)-based scoring functions. In particular, 3D-Jury and related GC methods assume that well-predicted (sub-)structures are more likely to occur frequently in a population of candidate models, compared to incorrectly folded fragments. While this approach is very successful in the context of diversified sets of models, identifying similar substructures is computationally expensive since all pairs of models need to be superimposed using MaxSub or related heuristics for structure-to-structure alignment. Here, we consider a fast alternative, in which structural similarity is assessed using 1D profiles, e.g., consisting of relative solvent accessibilities and secondary structures of equivalent amino acid residues in the respective models. We show that the new approach, dubbed 1D-Jury, allows to implicitly compare and rank N models in O(N) time, as opposed to quadratic complexity of 3D-Jury and related clustering-based methods. In addition, 1D-Jury avoids computationally expensive 3D superposition of pairs of models. At the same time, structural similarity scores based on 1D profiles are shown to correlate strongly with those obtained using MaxSub. In terms of the ability to select the best models as top candidates 1D-Jury performs on par with other GC methods. Other potential applications of the new approach, including fast clustering of large numbers of intermediate structures generated by folding simulations, are discussed as well. PMID:21244273

Advanced method optimization for volatile aroma profiling of beer using two-dimensional gas chromatography time-of-flight mass spectrometry.

PubMed

Stefanuto, Pierre-Hugues; Perrault, Katelynn A; Dubois, Lena M; L'Homme, Benjamin; Allen, Catherine; Loughnane, Caitriona; Ochiai, Nobuo; Focant, Jean-François

2017-07-21

The complex mixture of volatile organic compounds (VOCs) present in the headspace of Trappist and craft beers was studied to illustrate the efficiency of thermal desorption (TD) comprehensive two-dimensional gas chromatography time-of-flight mass spectrometry (GC×GC-TOFMS) for highlighting subtle differences between highly complex mixtures of VOCs. Headspace solid-phase microextraction (HS-SPME), multiple (and classical) stir bar sorptive extraction (mSBSE), static headspace (SHS), and dynamic headspace (DHS) were compared for the extraction of a set of 21 representative flavor compounds of beer aroma. A Box-Behnken surface response methodology experimental design optimization (DOE) was used for convex hull calculation (Delaunay's triangulation algorithms) of peak dispersion in the chromatographic space. The predicted value of 0.5 for the ratio between the convex hull and the available space was 10% higher than the experimental value, demonstrating the usefulness of the approach to improve optimization of the GC×GC separation. Chemical variations amongst aligned chromatograms were studied by means of Fisher Ratio (FR) determination and F-distribution threshold filtration at different significance levels (α=0.05 and 0.01) and based on z-score normalized area for data reduction. Statistically significant compounds were highlighted following principal component analysis (PCA) and hierarchical cluster analysis (HCA). The dendrogram structure not only provided clear visual information about similarities between products but also permitted direct identification of the chemicals and their relative weight in clustering. The effective coupling of DHS-TD-GC×GC-TOFMS with PCA and HCA was able to highlight the differences and common typical VOC patterns among 24 samples of different Trappist and selected Canadian craft beers. Copyright © 2017 Elsevier B.V. All rights reserved.

Milky Way globular cluster metallicity and low-mass X-ray binaries: the red giant influence

NASA Astrophysics Data System (ADS)

Vulic, N.; Barmby, P.; Gallagher, S. C.

2018-02-01

Galactic and extragalactic studies have shown that metal-rich globular clusters (GCs) are approximately three times more likely to host bright low-mass X-ray binaries (LMXBs) than metal-poor GCs. There is no satisfactory explanation for this metallicity effect. We tested the hypothesis that the number density of red giant branch (RGB) stars is larger in metal-rich GCs, and thus potentially the cause of the metallicity effect. Using Hubble Space Telescope photometry for 109 unique Milky Way GCs, we investigated whether RGB star density was correlated with GC metallicity. Isochrone fitting was used to calculate the number of RGB stars, which were normalized by the GC mass and fraction of observed GC luminosity, and determined density using the volume at the half-light radius (rh). The RGB star number density was weakly correlated with metallicity [Fe/H], giving Spearman and Kendall Rank test p-values of 0.000 16 and 0.000 21 and coefficients rs = 0.35 and τ = 0.24, respectively. This correlation may be biased by a possible dependence of rh on [Fe/H], although studies have shown that rh is correlated with Galactocentric distance and independent of [Fe/H]. The dynamical origin of the rh-metallicity correlation (tidal stripping) suggests that metal-rich GCs may have had more active dynamical histories, which would promote LMXB formation. No correlation between the RGB star number density and metallicity was found when using only the GCs that hosted quiescent LMXBs. A complete census of quiescent LMXBs in our Galaxy is needed to further probe the metallicity effect, which will be possible with the upcoming launch of eROSITA.

The distribution of stars around the Milky Way's central black hole. III. Comparison with simulations

NASA Astrophysics Data System (ADS)

Baumgardt, H.; Amaro-Seoane, P.; Schödel, R.

2018-01-01

Context. The distribution of stars around a massive black hole (MBH) has been addressed in stellar dynamics for the last four decades by a number of authors. Because of its proximity, the centre of the Milky Way is the only observational test case where the stellar distribution can be accurately tested. Past observational work indicated that the brightest giants in the Galactic centre (GC) may show a density deficit around the central black hole, not a cusp-like distribution, while we theoretically expect the presence of a stellar cusp. Aims: We here present a solution to this long-standing problem. Methods: We performed direct-summation N-body simulations of star clusters around massive black holes and compared the results of our simulations with new observational data of the GC's nuclear cluster. Results: We find that after a Hubble time, the distribution of bright stars as well as the diffuse light follow power-law distributions in projection with slopes of Γ ≈ 0.3 in our simulations. This is in excellent agreement with what is seen in star counts and in the distribution of the diffuse stellar light extracted from adaptive-optics (AO) assisted near-infrared observations of the GC. Conclusions: Our simulations also confirm that there exists a missing giant star population within a projected radius of a few arcsec around Sgr A*. Such a depletion of giant stars in the innermost 0.1 pc could be explained by a previously present gaseous disc and collisions, which means that a stellar cusp would also be present at the innermost radii, but in the form of degenerate compact cores.

A Differential Chemical Element Analysis of the Metal-poor Globular Cluster NGC 6397

NASA Astrophysics Data System (ADS)

Koch, Andreas; McWilliam, Andrew

2011-08-01

We present chemical abundances in three red giants and two turnoff (TO) stars in the metal-poor Galactic globular cluster (GC) NGC 6397 based on spectroscopy obtained with the Magellan Inamori Kyocera Echelle high-resolution spectrograph on the Magellan 6.5 m Clay telescope. Our results are based on a line-by-line differential abundance analysis relative to the well-studied red giant Arcturus and the Galactic halo field star Hip 66815. At a mean of -2.10 ± 0.02 (stat.) ±0.07 (sys.), the differential iron abundance is in good agreement with other studies in the literature based on gf-values. As in previous differential works we find a distinct departure from ionization equilibrium in that the abundances of Fe I and Fe II differ by ~0.1 dex, with opposite signs for the red giant branch (RGB) and TO stars. The α-element ratios are enhanced to 0.4 (RGB) and 0.3 dex (TO), respectively, and we also confirm strong variations in the O, Na, and Al/Fe abundance ratios. Accordingly, the light-element abundance patterns in one of the red giants can be attributed to pollution by an early generation of massive Type II supernovae. TO and RGB abundances are not significantly different, with the possible exception of Mg and Ti, which are, however, amplified by the patterns in one TO star additionally belonging to this early generation of GC stars. We discuss interrelations of these light elements as a function of the GC metallicity. This paper includes data gathered with the 6.5 m Magellan Telescopes located at Las Campanas Observatory, Chile.

Viable Cancer Cells in the Remnant Stomach are a Potential Source of Peritoneal Metastasis after Curative Distal Gastrectomy for Gastric Cancer.

PubMed

Murata, Satoshi; Yamamoto, Hiroshi; Yamaguchi, Tsuyoshi; Kaida, Sachiko; Ishida, Mitsuaki; Kodama, Hirokazu; Takebayashi, Katsushi; Shimizu, Tomoharu; Miyake, Toru; Tani, Tohru; Kushima, Ryoji; Tani, Masaji

2016-09-01

The mechanisms underlying peritoneal metastasis (PM) after curative gastrectomy for gastric cancer (GC) are not well elucidated. This study assessed whether viable cancer cells, including cancer stemlike cells (CSCs), were present in the remnant stomach immediately before gastrointestinal (GI) tract reconstruction because these could be a source of PM after gastrectomy. Saline fluid used for remnant stomach lumen irrigation before GI reconstruction was prospectively collected from 142 consecutive patients undergoing distal gastrectomy for GC and cytologically examined. Proliferative activity (Ki67 staining) and stemness (expression of the CSC surface markers CD44s or CD44v6) were evaluated in detected cancer cells. Viable cancer cells were detected in 33 (23.2 %) of the 142 remnant stomachs. These cells formed clusters and stained positively for Ki67, indicating proliferation. Cancer cells in remnant stomachs and surface cancer cells in primary GCs from 10 (30.3 %) of these 33 cases also stained positively for CD44s or CD44v6. In a multiple logistic regression analysis, advanced cancer (odds ratio [OR], 4.65; 95 % confidence interval [CI], 1.32-16.4; P = 0.017), tumor size of 40 mm or larger (OR, 3.78; 95 % CI, 1.12-12.8; P = 0.033), and histologic differentiation (OR, 3.10; 95 % CI, 1.30-7.40; P = 0.011) were associated independently with the presence of cancer cells in the remnant stomach. Viable, proliferative, and clustered cancer cells, including CSCs, were found in remnant gastric lumens immediately before GI reconstruction, indicating a possible cellular source of PM after curative gastrectomy for GC. Dissemination of gastric contents into the peritoneal cavity should be avoided during GI reconstruction.

Annual Quality Assurance Conference Presentations by Michelle Misselwitz

EPA Pesticide Factsheets

25th Annual Quality Assurance Conference. Presentations: Tools I Can’t Live Without: Speed Up Method Development and Translation, Essentials for GC and GC/MS Users; Tricks of the Trade, Keeping Your GC System Up Longer for the Analysis of Pesticides

Eccentric black hole mergers forming in globular clusters

NASA Astrophysics Data System (ADS)

Samsing, Johan

2018-05-01

We derive the probability for a newly formed binary black hole (BBH) to undergo an eccentric gravitational wave (GW) merger during binary-single interactions inside a stellar cluster. By integrating over the hardening interactions such a BBH must undergo before ejection, we find that the observable rate of BBH mergers with eccentricity >0.1 at 10 Hz relative to the rate of circular mergers can be as high as ˜5 % for a typical globular cluster (GC). This further suggests that BBH mergers forming through GW captures in binary-single interactions, eccentric or not, are likely to constitute ˜10 % of the total BBH merger rate from GCs. Such GW capture mergers can only be probed with an N -body code that includes general relativistic corrections, which explains why recent Newtonian cluster studies have not been able to resolve this population. Finally, we show that the relative rate of eccentric BBH mergers depends on the compactness of their host cluster, suggesting that an observed eccentricity distribution can be used to probe the origin of BBH mergers.

75 FR 47036 - Small Business Size Standards: Waiver of the Nonmanufacturer Rule

Federal Register 2010, 2011, 2012, 2013, 2014

2010-08-04

... Spectrometry (CS-MS) Systems, High Performance Liquid Chromatography (HPLC) Systems, Gas Chromatography Mass...-portable CS-MS, HPLC, GC-MS, and, ICP-MS Laboratory Equipment under PSC 6640 (Laboratory Equipment and...-portable equipment, SBA is limiting the waiver to not-portable CS-MS Systems, HPLC Systems, GC-MS Systems...

The mond external field effect on the dynamics of the globular clusters: general considerations and application to NGC 2419

DOE Office of Scientific and Technical Information (OSTI.GOV)

Derakhshani, Kamran, E-mail: kderakhshani@iasbs.ac.ir

2014-03-01

In this paper, we investigate the external field effect in the context of the MOdified Newtonian Dynamics (MOND) on the surface brightness and velocity dispersion profiles of globular clusters (GCs). Using N-MODY, which is an N-body simulation code with a MOND potential solver, we show that the general effect of the external field for diffuse clusters, which obey MOND in most of their parts, is that it pushes the dynamics toward the Newtonian regime. On the other hand, for more compact clusters, which are essentially Newtonian in their inner parts, the external field is effective mainly in the outer partsmore » of compact clusters. As a case study, we then choose the remote Galactic GC NGC 2419. By varying the cluster mass, half-light radius, and mass-to-light ratio, we aim to find a model that will reproduce the observational data most effectively, using N-MODY. We find that even if we take the Galactic external field into account, a Newtonian Plummer sphere represents the observational data better than MOND to an order of magnitude in terms of the total χ{sup 2} of surface brightness and velocity dispersion.« less

The MOND External Field Effect on the Dynamics of the Globular Clusters: General Considerations and Application to NGC 2419

NASA Astrophysics Data System (ADS)

Derakhshani, Kamran

2014-03-01

In this paper, we investigate the external field effect in the context of the MOdified Newtonian Dynamics (MOND) on the surface brightness and velocity dispersion profiles of globular clusters (GCs). Using N-MODY, which is an N-body simulation code with a MOND potential solver, we show that the general effect of the external field for diffuse clusters, which obey MOND in most of their parts, is that it pushes the dynamics toward the Newtonian regime. On the other hand, for more compact clusters, which are essentially Newtonian in their inner parts, the external field is effective mainly in the outer parts of compact clusters. As a case study, we then choose the remote Galactic GC NGC 2419. By varying the cluster mass, half-light radius, and mass-to-light ratio, we aim to find a model that will reproduce the observational data most effectively, using N-MODY. We find that even if we take the Galactic external field into account, a Newtonian Plummer sphere represents the observational data better than MOND to an order of magnitude in terms of the total χ2 of surface brightness and velocity dispersion.

COMPARATIVE EVALUATION OF GC/MS (GAS CHROMATOGRAPHY/MASS SPECTROMETRY) DATA ANALYSIS PROCESSING

EPA Science Inventory

Mass spectra obtained by fused silica capillary gas chromatography/mass spectrometry/data system (GC/MS/DS) analysis of mixtures of organic chemicals adsorbed on Tenax GC cartridges was subjected to manual and automated interpretative techniques. Synthetic mixtures (85 chemicals ...

Optical-near-IR analysis of globular clusters in the IKN dwarf spheroidal: a complex star formation history

NASA Astrophysics Data System (ADS)

Tudorica, A.; Georgiev, I. Y.; Chies-Santos, A. L.

2015-09-01

Context. Age, metallicity, and spatial distribution of globular clusters (GCs) provide a powerful tool for reconstructing major star-formation episodes in galaxies. IKN is a faint dwarf spheroidal (dSph) in the M 81 group of galaxies. It contains five old GCs, which makes it the galaxy with the highest known specific frequency (SN = 126). Aims: We estimate the photometric age, metallicity, and spatial distribution of the poorly studied IKN GCs. We search SDSS for GC candidates beyond the HST/ACS field of view, which covers half of IKN. Methods: To break the age-metallicity degeneracy in the colour, we used WHT/LIRIS KS-band photometry and derived photometric ages and metallicities by comparison with SSP models in the V,I,Ks colour space. Results: IKN GCs' VIKs colours are consistent with old ages (≥8 Gyr) and a metallicity distribution with a higher mean than is typical for such a dSph ([Fe/H] ≃ -1.4-0.2+0.6 dex). Their photometric mass range (0.5 < ℳGC< 4 × 105 M⊙) implies an unusually high mass ratio between GCs and field stars, of 10.6%. Mixture model analysis of the RGB field stars' metallicity suggests that 72% of the stars may have formed together with the GCs. Using the most massive GC-SFR relation, we calculated a star formation rate (SFR) of ~10 M⊙/yr during its formation epoch. We note that the more massive GCs are closer to the galaxy photometric centre. IKN GCs also appear spatially aligned along a line close to the major axis of the IKN and nearly orthogonal to the plane of spatial distribution of galaxies in the M 81 group. We identify one new IKN GC candidate based on colour and the PSF analysis of the SDSS data. Conclusions: The evidence of i) broad and high metallicity distribution of the field IKN RGB stars and its GCs, ii) high fraction, and iii) spatial alignment of IKN GCs supports a scenario for tidally triggered, complex IKN's star formation history in the context of interactions with galaxies in the M 81 group.

HIDING IN PLAIN SIGHT: RECORD-BREAKING COMPACT STELLAR SYSTEMS IN THE SLOAN DIGITAL SKY SURVEY

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sandoval, Michael A.; Vo, Richard P.; Romanowsky, Aaron J.

2015-07-20

Motivated by the recent, serendipitous discovery of the densest known galaxy, M60-UCD1, we present two initial findings from a follow-up search, using the Sloan Digital Sky Survey, Subaru/Suprime-Cam, and Hubble Space Telescope imaging, and SOuthern Astrophysical Research (SOAR)/Goodman spectroscopy. The first object discovered, M59-UCD3, has a similar size to M60-UCD1 (half-light radius of r{sub h} ∼ 20 pc) but is 40% more luminous (M{sub V} ∼ −14.6), making it the new densest-known galaxy. The second, M85-HCC1, has a size like a typical globular cluster (GC; r{sub h} ∼ 1.8 pc) but is much more luminous (M{sub V} ∼ −12.5). Thismore » hypercompact cluster is by far the densest confirmed free-floating stellar system, and is equivalent to the densest known nuclear star clusters. From spectroscopy, we find that both objects are relatively young (∼9 and ∼3 Gyr, respectively), with metal-abundances that resemble those of galaxy centers. Their host galaxies show clear signs of large-scale disturbances, and we conclude that these dense objects are the remnant nuclei of recently accreted galaxies. M59-UCD3 is an ideal target for follow-up with high-resolution imaging and spectroscopy to search for an overweight central supermassive black hole as was discovered in M60-UCD1. These findings also emphasize the potential value of ultra-compact dwarfs and massive GCs as tracers of the assembly histories of galaxies.« less

Photometric detection of a candidate low-mass giant binary system at the Milky Way Galactic Center

NASA Astrophysics Data System (ADS)

Krishna Gautam, Abhimat; Do, Tuan; Ghez, Andrea; Sakai, Shoko; Morris, Mark; Lu, Jessica; Witzel, Gunther; Jia, Siyao; Becklin, Eric Eric; Matthews, Keith

2018-01-01

We present the discovery of a new periodic variable star at the Milky Way Galactic Center (GC). This study uses laser guide-star adaptive optics data collected with the W. M. Keck 10 m telescope in the K‧-band (2.2 µm) over 35 nights spanning an 11 year time baseline, and 5 nights of additional H-band (1.6 µm) data. We implemented an iterative photometric calibration and local correction technique, resulting in a photometric uncertainty of Δm_K‧ ∼ 0.03 to a magnitude of m_K‧ ∼ 16.The periodically variable star has a 39.42 day period. We find that the star is not consistent with known periodically variable star classes in this period range with its observed color and luminosity, nor with an eclipsing binary system. The star's color and luminosity are however consistent with an ellipsoidal binary system at the GC, consisting of a K-giant and a dwarf component with an orbital period of 78.84 days. If a binary system, it represents the first detection of a low-mass giant binary system in the central half parsec of the GC. Such long-period binary systems can easily evaporate in the dense environment of the GC due to interactions with other stars. The existence and properties of a low-mass, long-period binary system can thus place valuable constraints on dynamical models of the GC environment and probe the density of the hypothesized dark cusp of stellar remnants at the GC.

Gas chromatography: Possible application of advanced instrumentation developed for solar system exploration to space station cabin atmospheres

NASA Technical Reports Server (NTRS)

Carle, G. C.

1985-01-01

Gas chromatography (GC) technology was developed for flight experiments in solar system exploration. The GC is a powerful analytical technique with simple devices separating individual components from complex mixtures to make very sensitive quantitative and qualitative measurements. It monitors samples containing mixtures of fixed gases and volatile organic molecules. The GC was used on the Viking mission in support of life detection experiments and on the Pioneer Venus Large Probe to determine the composition of the venusian atmosphere. A flight GC is under development to study the progress and extent of STS astronaut denitrogenation prior to extravehicular activity. Advanced flight GC concepts and systems for future solar system exploration are also studied. Studies include miniature ionization detectors and associated control systems capable of detecting from ppb up to 100% concentration levels. Further miniaturization is investigated using photolithography and controlled chemical etching in silicon wafers. Novel concepts such as ion mobility drift spectroscopy and multiplex gas chromatography are also developed for future flight experiments. These powerful analytical concepts and associated hardware are ideal for the monitoring of cabin atmospheres containing potentially dangerous volatile compounds.

On-line Analysis of Catalytic Reaction Products Using a High-Pressure Tandem Micro-reactor GC/MS.

PubMed

Watanabe, Atsushi; Kim, Young-Min; Hosaka, Akihiko; Watanabe, Chuichi; Teramae, Norio; Ohtani, Hajime; Kim, Seungdo; Park, Young-Kwon; Wang, Kaige; Freeman, Robert R

2017-01-01

When a GC/MS system is coupled with a pressurized reactor, the separation efficiency and the retention time are directly affected by the reactor pressure. To keep the GC column flow rate constant irrespective of the reaction pressure, a restrictor capillary tube and an open split interface are attached between the GC injection port and the head of a GC separation column. The capability of the attached modules is demonstrated for the on-line GC/MS analysis of catalytic reaction products of a bio-oil model sample (guaiacol), produced under a pressure of 1 to 3 MPa.

Chemometric techniques in oil classification from oil spill fingerprinting.

PubMed

Ismail, Azimah; Toriman, Mohd Ekhwan; Juahir, Hafizan; Kassim, Azlina Md; Zain, Sharifuddin Md; Ahmad, Wan Kamaruzaman Wan; Wong, Kok Fah; Retnam, Ananthy; Zali, Munirah Abdul; Mokhtar, Mazlin; Yusri, Mohd Ayub

2016-10-15

Extended use of GC-FID and GC-MS in oil spill fingerprinting and matching is significantly important for oil classification from the oil spill sources collected from various areas of Peninsular Malaysia and Sabah (East Malaysia). Oil spill fingerprinting from GC-FID and GC-MS coupled with chemometric techniques (discriminant analysis and principal component analysis) is used as a diagnostic tool to classify the types of oil polluting the water. Clustering and discrimination of oil spill compounds in the water from the actual site of oil spill events are divided into four groups viz. diesel, Heavy Fuel Oil (HFO), Mixture Oil containing Light Fuel Oil (MOLFO) and Waste Oil (WO) according to the similarity of their intrinsic chemical properties. Principal component analysis (PCA) demonstrates that diesel, HFO, MOLFO and WO are types of oil or oil products from complex oil mixtures with a total variance of 85.34% and are identified with various anthropogenic activities related to either intentional releasing of oil or accidental discharge of oil into the environment. Our results show that the use of chemometric techniques is significant in providing independent validation for classifying the types of spilled oil in the investigation of oil spill pollution in Malaysia. This, in consequence would result in cost and time saving in identification of the oil spill sources. Copyright © 2016. Published by Elsevier Ltd.

GC-MS-based metabolite profiling of Cosmos caudatus leaves possessing alpha-glucosidase inhibitory activity.

PubMed

Javadi, Neda; Abas, Faridah; Abd Hamid, Azizah; Simoh, Sanimah; Shaari, Khozirah; Ismail, Intan Safinar; Mediani, Ahmed; Khatib, Alfi

2014-06-01

Cosmos caudatus, which is known as "Ulam Raja," is an herbal plant used in Malaysia to enhance vitality. This study focused on the evaluation of the α-glucosidase inhibitory activity of different ethanolic extracts of C. caudatus. Six series of samples extracted with water, 20%, 40%, 60%, 80%, and 100% ethanol (EtOH) were employed. Gas chromatography-mass spectrometry (GC-MS) and orthogonal partial least-squares (OPLS) analysis was used to correlate bioactivity of different extracts to different metabolite profiles of C. caudatus. The obtained OPLS scores indicated a distinct and remarkable separation into 6 clusters, which were indicative of the 6 different ethanol concentrations. GC-MS can be integrated with multivariate data analysis to identify compounds that inhibit α-glucosidase activity. In addition, catechin, α-linolenic acid, α-D-glucopyranoside, and vitamin E compounds were identified and indicate the potential α-glucosidase inhibitory activity of this herb. GC-MS and multivariate data analysis was applied to discriminate Cosmos caudatus samples extracted with water and different ratio of ethanol. Orthogonal partial least-squares (OPLS) model developed was used to determine the major metabolites contributed to α-glucosidase inhibitory activity. This approach also has the ability to predict the bioactivity of a new set of extracts based on a developed validated regression model that is important for quality control of the herb preparation. © 2014 Institute of Food Technologists®

Quantification of polychlorinated dibenzo-p-dioxins and dibenzofurans by direct injection of sample extract into the comprehensive multidimensional gas chromatograph/high-resolution time-of-flight mass spectrometer.

PubMed

Shunji, Hashimoto; Yoshikatsu, Takazawa; Akihiro, Fushimi; Hiroyasu, Ito; Kiyoshi, Tanabe; Yasuyuki, Shibata; Masa-aki, Ubukata; Akihiko, Kusai; Kazuo, Tanaka; Hideyuki, Otsuka; Katsunori, Anezaki

2008-01-18

Polychlorinated dibenzo-p-dioxins and dibenzofurans in crude extracts of fly ash and flue gas from municipal waste incinerators were quantified using a comprehensive multidimensional gas chromatograph (GC x GC) coupled to a high-resolution time-of-flight mass spectrometer (HR-TOFMS). For identification and quantification, we developed our own program to prepare 3D chromatograms of selected mass numbers from the data of the GC x GC/HR-TOFMS. Isolation of all congeners with a TCDD toxic equivalency factor from the other isomers by only one injection was confirmed. The instrumental detection limit of TCDD on the GC x GC/HR-TOFMS was 0.9 pg by the relative calibration method. Quantification of these substances in the crude extracts was achieved by direct injection to the GC x GC/HR-TOFMS. The results agree with the values obtained using a generic gas chromatography/high-resolution mass spectrometry (GC/HRMS) system. It was confirmed that measurement by high-resolution TOFMS and GC x GC effectively reduces interference from other chemicals.

Development of an Exhaled Breath Monitoring System with Semiconductive Gas Sensors, a Gas Condenser Unit, and Gas Chromatograph Columns

PubMed Central

Itoh, Toshio; Miwa, Toshio; Tsuruta, Akihiro; Akamatsu, Takafumi; Izu, Noriya; Shin, Woosuck; Park, Jangchul; Hida, Toyoaki; Eda, Takeshi; Setoguchi, Yasuhiro

2016-01-01

Various volatile organic compounds (VOCs) in breath exhaled by patients with lung cancer, healthy controls, and patients with lung cancer who underwent surgery for resection of cancer were analyzed by gas condenser-equipped gas chromatography-mass spectrometry (GC/MS) for development of an exhaled breath monitoring prototype system involving metal oxide gas sensors, a gas condenser, and gas chromatography columns. The gas condenser-GC/MS analysis identified concentrations of 56 VOCs in the breath exhaled by the test population of 136 volunteers (107 patients with lung cancer and 29 controls), and selected four target VOCs, nonanal, acetoin, acetic acid, and propanoic acid, for use with the condenser, GC, and sensor-type prototype system. The prototype system analyzed exhaled breath samples from 101 volunteers (74 patients with lung cancer and 27 controls). The prototype system exhibited a level of performance similar to that of the gas condenser-GC/MS system for breath analysis. PMID:27834896

Metabolomic analysis of primary metabolites in citrus leaf during defense responses.

PubMed

Asai, Tomonori; Matsukawa, Tetsuya; Kajiyama, Shin'ichiro

2017-03-01

Mechanical damage is one of the unavoidable environmental stresses to plant growth and development. Plants induce a variety of reactions which defend against natural enemies and/or heal the wounded sites. Jasmonic acid (JA) and salicylic acid (SA), defense-related plant hormones, are well known to be involved in induction of defense reactions and play important roles as signal molecules. However, defense related metabolites are so numerous and diverse that roles of individual compounds are still to be elucidated. In this report, we carried out a comprehensive analysis of metabolic changes during wound response in citrus plants which are one of the most commercially important fruit tree families. Changes in amino acid, sugar, and organic acid profiles in leaves were surveyed after wounding, JA and SA treatments using gas chromatography-mass spectrometry (GC/MS) in seven citrus species, Citrus sinensis, Citrus limon, Citrus paradisi, Citrus unshiu, Citrus kinokuni, Citrus grandis, and Citrus hassaku. GC/MS data were applied to multivariate analyses including hierarchical cluster analysis (HCA), primary component analysis (PCA), and orthogonal partial least squares-discriminant analysis (OPLS-DA) to extract stress-related compounds. HCA showed the amino acid cluster including phenylalanine and tryptophan, suggesting that amino acids in this cluster are concertedly regulated during responses against treatments. OPLS-DA exhibited that tryptophan was accumulated after wounding and JA treatments in all species tested, while serine was down regulated. Our results suggest that tryptophan and serine are common biomarker candidates in citrus plants for wound stress. Copyright © 2016 The Society for Biotechnology, Japan. Published by Elsevier B.V. All rights reserved.

Wandering off the centre: a characterization of the random motion of intermediate-mass black holes in star clusters

NASA Astrophysics Data System (ADS)

de Vita, Ruggero; Trenti, Michele; MacLeod, Morgan

2018-04-01

Despite recent observational efforts, unequivocal signs for the presence of intermediate-mass black holes (IMBHs) in globular clusters (GCs) have not been found yet. Especially when the presence of IMBHs is constrained through dynamical modelling of stellar kinematics, it is fundamental to account for the displacement that the IMBH might have with respect to the GC centre. In this paper, we analyse the IMBH wandering around the stellar density centre using a set of realistic direct N-body simulations of star cluster evolution. Guided by the simulation results, we develop a basic yet accurate model that can be used to estimate the average IMBH radial displacement (〈rbh〉) in terms of structural quantities as the core radius (rc), mass (Mc), and velocity dispersion (σc), in addition to the average stellar mass (mc) and the IMBH mass (Mbh). The model can be expressed by the equation < r_bh > /r_c=A(m_c/M_bh)^α [σ _c^2r_c/(GM_c)]^β, in which the free parameters A, α, and β are calculated through comparison with the numerical results on the IMBH displacement. The model is then applied to Galactic GCs, finding that for an IMBH mass equal to 0.1 per cent of the GC mass, the typical expected displacement of a putative IMBH is around 1 arcsec for most Galactic GCs, but IMBHs can wander to larger angular distances in some objects, including a prediction of a 2.5 arcsec displacement for NGC 5139 (ω Cen), and >10 arcsec for NGC5053, NGC6366, and ARP2.

Globular cluster formation with multiple stellar populations: self-enrichment in fractal massive molecular clouds

NASA Astrophysics Data System (ADS)

Bekki, Kenji

2017-08-01

Internal chemical abundance spreads are one of fundamental properties of globular clusters (GCs) in the Galaxy. In order to understand the origin of such abundance spreads, we numerically investigate GC formation from massive molecular clouds (MCs) with fractal structures using our new hydrodynamical simulations with star formation and feedback effects of core-collapse supernovae (SNe) and asymptotic giant branch (AGB) stars. We particularly investigate star formation from gas chemically contaminated by SNe and AGB stars ('self-enrichment') in forming GCs within MCs with different initial conditions and environments. The principal results are as follows. GCs with multiple generations of stars can be formed from merging of hierarchical star cluster complexes that are developed from high-density regions of fractal MCs. Feedback effects of SNe and AGB stars can control the formation efficiencies of stars formed from original gas of MCs and from gas ejected from AGB stars. The simulated GCs have strong radial gradients of helium abundances within the central 3 pc. The original MC masses need to be as large as 107 M⊙ for a canonical initial stellar mass function (IMF) so that the final masses of stars formed from AGB ejecta can be ˜105 M⊙. Since star formation from AGB ejecta is rather prolonged (˜108 yr), their formation can be strongly suppressed by SNe of the stars themselves. This result implies that the so-called mass budget problem is much more severe than ever thought in the self-enrichment scenario of GC formation and thus that IMF for the second generation of stars should be 'top-light'.

The SLUGGS survey: the mass distribution in early-type galaxies within five effective radii and beyond

NASA Astrophysics Data System (ADS)

Alabi, Adebusola B.; Forbes, Duncan A.; Romanowsky, Aaron J.; Brodie, Jean P.; Strader, Jay; Janz, Joachim; Pota, Vincenzo; Pastorello, Nicola; Usher, Christopher; Spitler, Lee R.; Foster, Caroline; Jennings, Zachary G.; Villaume, Alexa; Kartha, Sreeja

2016-08-01

We study mass distributions within and beyond 5 effective radii (Re) in 23 early-type galaxies from the SAGES Legacy Unifying Globulars and Galaxies Survey, using their globular cluster (GC) kinematic data. The data are obtained with Keck/DEep Imaging Multi-Object Spectrograph, and consist of line-of-sight velocities for ˜3500 GCs, measured with a high precision of ˜15 km s-1 per GC and extending out to ˜13 Re. We obtain the mass distribution in each galaxy using the tracer mass estimator of Watkins et al. and account for kinematic substructures, rotation of the GC systems and galaxy flattening in our mass estimates. The observed scatter between our mass estimates and results from the literature is less than 0.2 dex. The dark matter fraction within 5 Re (fDM) increases from ˜0.6 to ˜0.8 for low- and high-mass galaxies, respectively, with some intermediate-mass galaxies (M* ˜ 1011 M⊙) having low fDM ˜ 0.3, which appears at odds with predictions from simple galaxy models. We show that these results are independent of the adopted orbital anisotropy, stellar mass-to-light (M/L) ratio, and the assumed slope of the gravitational potential. However, the low fDM in the ˜1011 M⊙ galaxies agrees with the cosmological simulations of Wu et al. where the pristine dark matter distribution has been modified by baryons during the galaxy assembly process. We find hints that these M* ˜ 1011 M⊙ galaxies with low fDM have very diffuse dark matter haloes, implying that they assembled late. Beyond 5 Re, the M/L gradients are steeper in the more massive galaxies and shallower in both low and intermediate mass galaxies.

Combining peak- and chromatogram-based retention time alignment algorithms for multiple chromatography-mass spectrometry datasets.

PubMed

Hoffmann, Nils; Keck, Matthias; Neuweger, Heiko; Wilhelm, Mathias; Högy, Petra; Niehaus, Karsten; Stoye, Jens

2012-08-27

Modern analytical methods in biology and chemistry use separation techniques coupled to sensitive detectors, such as gas chromatography-mass spectrometry (GC-MS) and liquid chromatography-mass spectrometry (LC-MS). These hyphenated methods provide high-dimensional data. Comparing such data manually to find corresponding signals is a laborious task, as each experiment usually consists of thousands of individual scans, each containing hundreds or even thousands of distinct signals. In order to allow for successful identification of metabolites or proteins within such data, especially in the context of metabolomics and proteomics, an accurate alignment and matching of corresponding features between two or more experiments is required. Such a matching algorithm should capture fluctuations in the chromatographic system which lead to non-linear distortions on the time axis, as well as systematic changes in recorded intensities. Many different algorithms for the retention time alignment of GC-MS and LC-MS data have been proposed and published, but all of them focus either on aligning previously extracted peak features or on aligning and comparing the complete raw data containing all available features. In this paper we introduce two algorithms for retention time alignment of multiple GC-MS datasets: multiple alignment by bidirectional best hits peak assignment and cluster extension (BIPACE) and center-star multiple alignment by pairwise partitioned dynamic time warping (CeMAPP-DTW). We show how the similarity-based peak group matching method BIPACE may be used for multiple alignment calculation individually and how it can be used as a preprocessing step for the pairwise alignments performed by CeMAPP-DTW. We evaluate the algorithms individually and in combination on a previously published small GC-MS dataset studying the Leishmania parasite and on a larger GC-MS dataset studying grains of wheat (Triticum aestivum). We have shown that BIPACE achieves very high precision and recall and a very low number of false positive peak assignments on both evaluation datasets. CeMAPP-DTW finds a high number of true positives when executed on its own, but achieves even better results when BIPACE is used to constrain its search space. The source code of both algorithms is included in the OpenSource software framework Maltcms, which is available from http://maltcms.sf.net. The evaluation scripts of the present study are available from the same source.

Combining peak- and chromatogram-based retention time alignment algorithms for multiple chromatography-mass spectrometry datasets

PubMed Central

2012-01-01

Background Modern analytical methods in biology and chemistry use separation techniques coupled to sensitive detectors, such as gas chromatography-mass spectrometry (GC-MS) and liquid chromatography-mass spectrometry (LC-MS). These hyphenated methods provide high-dimensional data. Comparing such data manually to find corresponding signals is a laborious task, as each experiment usually consists of thousands of individual scans, each containing hundreds or even thousands of distinct signals. In order to allow for successful identification of metabolites or proteins within such data, especially in the context of metabolomics and proteomics, an accurate alignment and matching of corresponding features between two or more experiments is required. Such a matching algorithm should capture fluctuations in the chromatographic system which lead to non-linear distortions on the time axis, as well as systematic changes in recorded intensities. Many different algorithms for the retention time alignment of GC-MS and LC-MS data have been proposed and published, but all of them focus either on aligning previously extracted peak features or on aligning and comparing the complete raw data containing all available features. Results In this paper we introduce two algorithms for retention time alignment of multiple GC-MS datasets: multiple alignment by bidirectional best hits peak assignment and cluster extension (BIPACE) and center-star multiple alignment by pairwise partitioned dynamic time warping (CeMAPP-DTW). We show how the similarity-based peak group matching method BIPACE may be used for multiple alignment calculation individually and how it can be used as a preprocessing step for the pairwise alignments performed by CeMAPP-DTW. We evaluate the algorithms individually and in combination on a previously published small GC-MS dataset studying the Leishmania parasite and on a larger GC-MS dataset studying grains of wheat (Triticum aestivum). Conclusions We have shown that BIPACE achieves very high precision and recall and a very low number of false positive peak assignments on both evaluation datasets. CeMAPP-DTW finds a high number of true positives when executed on its own, but achieves even better results when BIPACE is used to constrain its search space. The source code of both algorithms is included in the OpenSource software framework Maltcms, which is available from http://maltcms.sf.net. The evaluation scripts of the present study are available from the same source. PMID:22920415

Predictions of Gamma-ray Emission from Globular Cluster Millisecond Pulsars Above 100 MeV

NASA Technical Reports Server (NTRS)

Venter, C.; de Jaker, O.C.; Clapson, A.C.

2009-01-01

The recent Fermi detection of the globular cluster (GC) 47 Tucanae highlighted the importance of modeling collective gamma-ray emission of millisecond pulsars (MSPs) in GCs. Steady flux from such populations is also expected in the very high energy (VHE) domain covered by ground-based Cherenkov telescopes. We present pulsed curvature radiation (CR) as well as unpulsed inverse Compton (IC) calculations for an ensemble of MSPs in the GCs 47 Tucanae and Terzan 5. We demonstrate that the CR from these GCs should be easily detectable for Fermi, while constraints on the total number of MSps and the nebular B-field may be derived using the IC flux components.

Interaction of herpes simplex virus glycoprotein gC with mammalian cell surface molecules.

PubMed Central

Tal-Singer, R; Peng, C; Ponce De Leon, M; Abrams, W R; Banfield, B W; Tufaro, F; Cohen, G H; Eisenberg, R J

1995-01-01

The entry of herpes simplex virus (HSV) into mammalian cells is a multistep process beginning with an attachment step involving glycoproteins gC and gB. A second step requires the interaction of glycoprotein gD with a cell surface molecule. We explored the interaction between gC and the cell surface by using purified proteins in the absence of detergent. Truncated forms of gC and gD, gC1(457t), gC2(426t), and gD1(306t), lacking the transmembrane and carboxyl regions were expressed in the baculovirus system. We studied the ability of these proteins to bind to mammalian cells, to bind to immobilized heparin, to block HSV type 1 (HSV-1) attachment to cells, and to inhibit plaque formation by HSV-1. Each of these gC proteins bound to conformation-dependent monoclonal antibodies and to human complement component C3b, indicating that they maintained the same conformation of gC proteins expressed in mammalian cells. Biotinylated gC1(457t) and gC2(426t) each bind to several cell lines. Binding was inhibited by an excess of unlabeled gC but not by gD, indicating specificity. The attachment of gC to cells involves primarily heparan sulfate proteoglycans, since heparitinase treatment of cells reduced gC binding by 50% but had no effect on gD binding. Moreover, binding of gC to two heparan sulfate-deficient L-cell lines, gro2C and sog9, both of which are mostly resistant to HSV infection, was markedly reduced. Purified gD1 (306t), however, bound equally well to the two mutant cell lines. In contrast, saturating amounts of gC1(457t) interfered with HSV-1 attachment to cells but failed to block plaque formation, suggesting a role for gC in attachment but not penetration. A mutant form of gC lacking residues 33 to 123, gC1(delta 33-123t), expressed in the baculovirus system, bound significantly less well to cells than did gC1(457t) and competed poorly with biotinylated gC1(457t) for binding. These results suggest that residues 33 to 123 are important for gC attachment to cells. In contrast, both the mutant and wild-type forms of gC bound to immobilized heparin, indicating that binding of these proteins to the cell surface involves more than a simple interaction with heparin. To determine that the contribution of the N-terminal region of gC is important for HSV attachment, we compared several properties of a mutant HSV-1 which contains gC lacking amino acids 33 to 123 to those of its parental virus, which contains full-length gC. The mutant bound less well to cells than the parental virus but exhibited normal growth properties.(ABSTRACT TRUNCATED AT 400 WORDS) PMID:7769707

Automated two-dimensional interface for capillary gas chromatography

DOEpatents

Strunk, M.R.; Bechtold, W.E.

1996-02-20

A multidimensional gas chromatograph (GC) system is disclosed which has wide bore capillary and narrow bore capillary GC columns in series and has a novel system interface. Heart cuts from a high flow rate sample, separated by a wide bore GC column, are collected and directed to a narrow bore GC column with carrier gas injected at a lower flow compatible with a mass spectrometer. A bimodal six-way valve is connected with the wide bore GC column outlet and a bimodal four-way valve is connected with the narrow bore GC column inlet. A trapping and retaining circuit with a cold trap is connected with the six-way valve and a transfer circuit interconnects the two valves. The six-way valve is manipulated between first and second mode positions to collect analyte, and the four-way valve is manipulated between third and fourth mode positions to allow carrier gas to sweep analyte from a deactivated cold trap, through the transfer circuit, and then to the narrow bore GC capillary column for separation and subsequent analysis by a mass spectrometer. Rotary valves have substantially the same bore width as their associated columns to minimize flow irregularities and resulting sample peak deterioration. The rotary valves are heated separately from the GC columns to avoid temperature lag and resulting sample deterioration. 3 figs.

Automated two-dimensional interface for capillary gas chromatography

DOEpatents

Strunk, Michael R.; Bechtold, William E.

1996-02-20

A multidimensional gas chromatograph (GC) system having wide bore capillary and narrow bore capillary GC columns in series and having a novel system interface. Heart cuts from a high flow rate sample, separated by a wide bore GC column, are collected and directed to a narrow bore GC column with carrier gas injected at a lower flow compatible with a mass spectrometer. A bimodal six-way valve is connected with the wide bore GC column outlet and a bimodal four-way valve is connected with the narrow bore GC column inlet. A trapping and retaining circuit with a cold trap is connected with the six-way valve and a transfer circuit interconnects the two valves. The six-way valve is manipulated between first and second mode positions to collect analyte, and the four-way valve is manipulated between third and fourth mode positions to allow carrier gas to sweep analyte from a deactivated cold trap, through the transfer circuit, and then to the narrow bore GC capillary column for separation and subsequent analysis by a mass spectrometer. Rotary valves have substantially the same bore width as their associated columns to minimize flow irregularities and resulting sample peak deterioration. The rotary valves are heated separately from the GC columns to avoid temperature lag and resulting sample deterioration.

Radial Velocity and Metallicity Determinations for Remote Globular Clusters in M31 and M33

NASA Astrophysics Data System (ADS)

Ferguson, Annette; Barmby, Pauline; Cote, Pat; Harris, Bill; Huxor, Avon; Mackey, Dougal; Puzia, Thomas

2009-08-01

We propose to determine radial velocities and metallicities for a sample of ~ 20 remote globular clusters (GCs) which we have discovered in the outer halos of the Local Group galaxies M31 and M33. Most of these objects have been uncovered in the course of the PAndAs survey, an international collaboration which is using CFHT/MegaPrime to map more than 300 square degrees in the g and i bands around M31 and M33. The target clusters, all of which have been identified from high- quality imaging (typically ≲ 0.8'' seeing), lie at projected radii of up to 130 kpc from M31 and 30 kpc from M33 and thus lie significantly beyond all previously-known GCs in these systems. Rather intriguingly, many of the new discoveries exhibit either possible associations with halo tidal streams, or show unusual spatial anisotropies with respect to their host galaxy. Velocity and metallicity data for these objects will provide a detailed characterization of the ensemble properties of the outer halo GC populations, and, through the search for kinematic and metallicity correlations within groups of GCs, help determine what fraction of these objects can be attributed to either late or ongoing accretion events. Ultimately, these data will also provide a basis for improved dynamical mass estimates of both galaxies.

Design Method of Digital Optimal Control Scheme and Multiple Paralleled Bridge Type Current Amplifier for Generating Gradient Magnetic Fields in MRI Systems

NASA Astrophysics Data System (ADS)

Watanabe, Shuji; Takano, Hiroshi; Fukuda, Hiroya; Hiraki, Eiji; Nakaoka, Mutsuo

This paper deals with a digital control scheme of multiple paralleled high frequency switching current amplifier with four-quadrant chopper for generating gradient magnetic fields in MRI (Magnetic Resonance Imaging) systems. In order to track high precise current pattern in Gradient Coils (GC), the proposal current amplifier cancels the switching current ripples in GC with each other and designed optimum switching gate pulse patterns without influences of the large filter current ripple amplitude. The optimal control implementation and the linear control theory in GC current amplifiers have affinity to each other with excellent characteristics. The digital control system can be realized easily through the digital control implementation, DSPs or microprocessors. Multiple-parallel operational microprocessors realize two or higher paralleled GC current pattern tracking amplifier with optimal control design and excellent results are given for improving the image quality of MRI systems.

The State-of-the-art HST Astro-photometric Analysis of the Core of ω Centauri. I. The Catalog

NASA Astrophysics Data System (ADS)

Bellini, A.; Anderson, J.; Bedin, L. R.; King, I. R.; van der Marel, R. P.; Piotto, G.; Cool, A.

2017-06-01

We have constructed the most comprehensive catalog of photometry and proper motions ever assembled for a globular cluster (GC). The core of ωCen has been imaged over 650 times through WFC3's UVIS and IR channels for the purpose of detector calibration. There exist from 4 to over 60 exposures through each of 26 filters stretching continuously from F225W in the UV to F160W in the infrared. Furthermore, the 11 yr baseline between these data and a 2002 ACS survey has allowed us to more than double the proper-motion accuracy and triple the number of well-measured stars compared to our previous groundbreaking effort. This totally unprecedented complete spectral coverage of over 470,000 stars within the cluster's core, from the tip of the red giant branch down to the white dwarfs, provides the best astro-photometric observational database yet to understand the multiple-population phenomenon in any GC. In this first paper of the series, we describe in detail the data-reduction processes and deliver the astro-photometric catalog to the astronomical community. Based on archival observations with the NASA/ESA Hubble Space Telescope, obtained at the Space Telescope Science Institute, which is operated by AURA, Inc., under NASA contract NAS 5-26555.

Essential Oil Composition of Pinus peuce Griseb. Needles and Twigs from Two National Parks of Kosovo.

PubMed

Hajdari, Avni; Mustafa, Behxhet; Nebija, Dashnor; Selimi, Hyrmete; Veselaj, Zeqir; Breznica, Pranvera; Quave, Cassandra Leah; Novak, Johannes

The principal aim of this study was to analyze the chemical composition and qualitative and quantitative variability of essential oils obtained from seven naturally grown populations of the Pinus peuce Grisebach, Pinaceae in Kosovo. Plant materials were collected from three populations in the Sharri National Park and from four other populations in the Bjeshkët e Nemuna National Park, in Kosovo. Essential oils were obtained by steam distillation and analyzed by GC-FID (Gas Chromatography-Flame Ionization Detection) and GC-MS (Gas Chromatography-Mass Spectrometry). The results showed that the yield of essential oils (v/w dry weight) varied depending on the origin of population and the plant organs and ranged from 0.7 to 3.3%. In total, 51 compounds were identified. The main compounds were α-pinene (needles: 21.6-34.9%; twigs: 11.0-24%), β-phellandrene (needles: 4.1-27.7; twigs: 29.0-49.8%), and β-pinene (needles: 10.0-16.1; twigs: 6.9-20.7%). HCA (Hierarchical Cluster Analysis) and PCA (Principal Component Analyses) were used to assess geographical variations in essential oil composition. Statistical analysis showed that the analyzed populations are grouped in three main clusters which seem to reflect microclimatic conditions on the chemical composition of the essential oils.

Creation and formation mechanism of new carbon phases constructed by amorphous carbon

NASA Astrophysics Data System (ADS)

Yao, Mingguang; Cui, Wen; Liu, Bingbing

Our recent effort is focusing on the creation of new hard/superhard carbon phases constructed by disordered carbons or amorphous carbon clusters under high pressure. We showed that the pressure-induced amorphous hard carbon clusters from collapsed fullerenes can be used as building blocks (BBs) for constructing novel carbon structures. This new strategy has been verified by compressing a series of intercalated fullerides, pre-designed by selecting various dopants with special features. We demonstrate that the boundaries of the amorphous BBs are mediated by intercalated dopants and several new superhard materials have been prepared. We also found that the dopant-mediated BBs can be arranged in either ordered or disordered structures, both of which can be hard enough to indent the diamond anvils. The hardening mechanisms of the new phases have also been discussed. For the glassy carbon (GC) constructructed by disordered fullerene-like nanosized fragments, we also found that these disordered fragments can bond and the compressed GC transformed into a transparent superhard phase. Such pressure-induced transformation has been discovered to be driven by a novel mechanism (unpublished). By understanding the mechanisms we can clarify the controversial results on glassy carbon reported recently. The authors would like to thank the financial support from the National Natural Science Foundation of China (No. 11474121, 51320105007).

VizieR Online Data Catalog: Virgo cluster ETGs: GC and galaxy diffuse light (Li+, 2015)

NASA Astrophysics Data System (ADS)

Li, B.; Peng, E. W.; Zhang, H.-X.; Blakeslee, J. P.; Cote, P.; Ferrarese, L.; Jordan, A.; Liu, C.; Mei, S.; Puzia, T. H.; Takamiya, M.; Trancho, G.; West, M. J.

2017-09-01

We selected four intermediate-luminosity ETGs from the ACS Virgo Cluster Survey (ACSVCS; Cote et al. 2004, J/ApJS/153/223), a homogeneous Hubble Space Telescope survey of 100 ETGs in the nearby Virgo cluster of galaxies using the Advanced Camera for Surveys (ACS; Ford et al. 1998SPIE.3356..234F). We observed these galaxies with the Gemini Multi-Object Spectrographs (GMOS, Hook et al. 2004PASP..116..425H), twin instruments on the Gemini North and Gemini South telescopes. Our target galaxies have sizes (Re~10-18") that fit well within the GMOS field of view (5.5 arcmin2), providing coverage out to 10-16Re. Each galaxy contained ~50 targetable GCs with V<23 mag. VCC 1231, VCC 1062, and VCC 2000 data were taken with GMOS-South, whereas data for VCC 685 was taken with GMOS-North. (3 data files).

A Potential Biofilm Metabolite Signature for Caries Activity - A Pilot Clinical Study

PubMed Central

Zandona, F; Soini, HA; Novotny, MV; Santiago, E; Eckert, GJ; Preisser, JS; Benecha, HK; Arthur, RA; Zero, DT

2016-01-01

Background This study's aim was to compare the dental biofilm metabolite-profile of caries-active (N=11) or caries-free (N=4) children by gas chromatography-mass spectrometry (GC/MS) analyses. Methods Samples collected after overnight fasting, with or without a previous glucose rinse, were combined for each child based on the caries status of the site, re-suspended in ethanol and analyzed by GC/MS. Results Biofilm from caries-active sites exhibited a different chromatographic profile compared to caries-free sites. Qualitative and quantitative analysis suggested a special cluster of branched alcohols and esters present at substantially higher intensity in biofilms of caries-active sites. Conclusions This pilot study indicates that there are metabolites present in the biofilm which have the potential to provide a characteristic metabolomics signature for caries activity. PMID:27885354

The hunt for new and interesting pulsars with the Green Bank Telescope

NASA Astrophysics Data System (ADS)

Lynch, Ryan Sean

2011-01-01

Pulsars are excellent tools for studying a variety of phenomena in physics and astronomy. Millisecond pulsars (MSPs) are particularly useful because of their clock-like precision and because they are often part of exotic systems. The majority of MSPs have been found in globular clusters (GCs) or in large-area surveys, but most surveys are still sensitivity limited, meaning that many fascinating systems are waiting to be found. A number of technical advances made over the past decade have enabled more sensitive pulsar surveys. This thesis presents the results of several projects with over-arching goals that focused on the discovery and study of new pulsars, with an emphasis on MSPs. Seven new pulsars have been discovered in surveys of 17 GCs, and the majority of these are fully recycled MSPs. These surveys provide insight into which factors influence the total pulsar content of GCs. New timing solutions have been obtained for an additional six GC pulsars that were previously known but not fully characterized; updated solutions are also presented for five well-studied pulsars. Highlights include the discovery of the most massive companion to a fully recycled MSP, and confirmation of a rare, non-recycled GC pulsar. A detailed study of the population of non-recycled pulsars that originate in GCs is also presented, with an emphasis on those pulsars that escape from their host GCs and enter the field of the Galaxy. These results suggest that non-recycled pulsars in GCs are formed via electron capture supernovae, and that these must induce smaller natal kicks than core collapse supernovae. The total population of non-recycled pulsars that have escaped from clusters may be significant, but the chance of identifying them as a separate population is presently small. Finally, early results of the Green Bank Telescope Drift Scan survey are reported. The survey has discovered 26 new pulsars so far, and timing solutions for ten are discussed here, including two recycled pulsars. One of these looks to be an excellent laboratory for studying extreme physics. Future avenues of research are also presented, along with a description of the author's role in education and public outreach projects.

A Semi-Preemptive Garbage Collector for Solid State Drives

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lee, Junghee; Kim, Youngjae; Shipman, Galen M

2011-01-01

NAND flash memory is a preferred storage media for various platforms ranging from embedded systems to enterprise-scale systems. Flash devices do not have any mechanical moving parts and provide low-latency access. They also require less power compared to rotating media. Unlike hard disks, flash devices use out-of-update operations and they require a garbage collection (GC) process to reclaim invalid pages to create free blocks. This GC process is a major cause of performance degradation when running concurrently with other I/O operations as internal bandwidth is consumed to reclaim these invalid pages. The invocation of the GC process is generally governedmore » by a low watermark on free blocks and other internal device metrics that different workloads meet at different intervals. This results in I/O performance that is highly dependent on workload characteristics. In this paper, we examine the GC process and propose a semi-preemptive GC scheme that can preempt on-going GC processing and service pending I/O requests in the queue. Moreover, we further enhance flash performance by pipelining internal GC operations and merge them with pending I/O requests whenever possible. Our experimental evaluation of this semi-preemptive GC sheme with realistic workloads demonstrate both improved performance and reduced performance variability. Write-dominant workloads show up to a 66.56% improvement in average response time with a 83.30% reduced variance in response time compared to the non-preemptive GC scheme.« less

Analysis of bacterial fatty acids by flow modulated comprehensive two-dimensional gas chromatography with parallel flame ionization detector/mass spectrometry.

PubMed

Gu, Qun; David, Frank; Lynen, Frédéric; Rumpel, Klaus; Xu, Guowang; De Vos, Paul; Sandra, Pat

2010-06-25

Comprehensive two-dimensional gas chromatography (GCxGC) offers an interesting tool for profiling bacterial fatty acids. Flow modulated GCxGC using a commercially available system was evaluated, different parameters such as column flows and modulation time were optimized. The method was tested on bacterial fatty acid methyl esters (BAMEs) from Stenotrophomonas maltophilia LMG 958T by using parallel flame ionization detector (FID)/mass spectrometry (MS). The results are compared to data obtained using a thermal modulated GCxGC system. The data show that flow modulated GCxGC-FID/MS method can be applied in a routine environment and offers interesting perspectives for chemotaxonomy of bacteria.

TU-CD-BRB-12: Radiogenomics of MRI-Guided Prostate Cancer Biopsy Habitats

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stoyanova, R; Lynne, C; Abraham, S

2015-06-15

Purpose: Diagnostic prostate biopsies are subject to sampling bias. We hypothesize that quantitative imaging with multiparametric (MP)-MRI can more accurately direct targeted biopsies to index lesions associated with highest risk clinical and genomic features. Methods: Regionally distinct prostate habitats were delineated on MP-MRI (T2-weighted, perfusion and diffusion imaging). Directed biopsies were performed on 17 habitats from 6 patients using MRI-ultrasound fusion. Biopsy location was characterized with 52 radiographic features. Transcriptome-wide analysis of 1.4 million RNA probes was performed on RNA from each habitat. Genomics features with insignificant expression values (<0.25) and interquartile range <0.5 were filtered, leaving total of 212more » genes. Correlation between imaging features, genes and a 22 feature genomic classifier (GC), developed as a prognostic assay for metastasis after radical prostatectomy was investigated. Results: High quality genomic data was derived from 17 (100%) biopsies. Using the 212 ‘unbiased’ genes, the samples clustered by patient origin in unsupervised analysis. When only prostate cancer related genomic features were used, hierarchical clustering revealed samples clustered by needle-biopsy Gleason score (GS). Similarly, principal component analysis of the imaging features, found the primary source of variance segregated the samples into high (≥7) and low (6) GS. Pearson’s correlation analysis of genes with significant expression showed two main patterns of gene expression clustering prostate peripheral and transitional zone MRI features. Two-way hierarchical clustering of GC with radiomics features resulted in the expected groupings of high and low expressed genes in this metastasis signature. Conclusions: MP-MRI-targeted diagnostic biopsies can potentially improve risk stratification by directing pathological and genomic analysis to clinically significant index lesions. As determinant lesions are more reliably identified, targeting with radiotherapy should improve outcome. This is the first demonstration of a link between quantitative imaging features (radiomics) with genomic features in MRI-directed prostate biopsies. The research was supported by NIH- NCI R01 CA 189295 and R01 CA 189295; E Davicioni is partial owner of GenomeDx Biosciences, Inc. M Takhar, N Erho, L Lam, C Buerki and E Davicioni are current employees at GenomeDx Biosciences, Inc.« less

Germinal-center development of memory B cells driven by IL-9 from follicular helper T cells.

PubMed

Wang, Yifeng; Shi, Jingwen; Yan, Jiacong; Xiao, Zhengtao; Hou, Xiaoxiao; Lu, Peiwen; Hou, Shiyue; Mao, Tianyang; Liu, Wanli; Ma, Yuanwu; Zhang, Lianfeng; Yang, Xuerui; Qi, Hai

2017-08-01

Germinal centers (GCs) support high-affinity, long-lived humoral immunity. How memory B cells develop in GCs is not clear. Through the use of a cell-cycle-reporting system, we identified GC-derived memory precursor cells (GC-MP cells) that had quit cycling and reached G0 phase while in the GC, exhibited memory-associated phenotypes with signs of affinity maturation and localized toward the GC border. After being transferred into adoptive hosts, GC-MP cells reconstituted a secondary response like genuine memory B cells. GC-MP cells expressed the interleukin 9 (IL-9) receptor and responded to IL-9. Acute treatment with IL-9 or antibody to IL-9 accelerated or retarded the positioning of GC-MP cells toward the GC edge and exit from the GC, and enhanced or inhibited the development of memory B cells, which required B cell-intrinsic responsiveness to IL-9. Follicular helper T cells (T FH cells) produced IL-9, and deletion of IL-9 from T cells or, more specifically, from GC T FH cells led to impaired memory formation of B cells. Therefore, the GC development of memory B cells is promoted by T FH cell-derived IL-9.

A novel gene expression-based prognostic scoring system to predict survival in gastric cancer

DOE PAGES

Wang, Pin; Wang, Yunshan; Hang, Bo; ...

2016-07-11

Analysis of gene expression patterns in gastric cancer (GC) can help to identify a comprehensive panel of gene biomarkers for predicting clinical outcomes and to discover potential new therapeutic targets. Here, a multi-step bioinformatics analytic approach was developed to establish a novel prognostic scoring system for GC. We first identified 276 genes that were robustly differentially expressed between normal and GC tissues, of which, 249 were found to be significantly associated with overall survival (OS) by univariate Cox regression analysis. The biological functions of 249 genes are related to cell cycle, RNA/ncRNA process, acetylation and extracellular matrix organization. A networkmore » was generated for view of the gene expression architecture of 249 genes in 265 GCs. Finally, we applied a canonical discriminant analysis approach to identify a 53-gene signature and a prognostic scoring system was established based on a canonical discriminant function of 53 genes. The prognostic scores strongly predicted patients with GC to have either a poor or good OS. Our study raises the prospect that the practicality of GC patient prognosis can be assessed by this prognostic scoring system.« less

A novel gene expression-based prognostic scoring system to predict survival in gastric cancer

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wang, Pin; Wang, Yunshan; Hang, Bo

Analysis of gene expression patterns in gastric cancer (GC) can help to identify a comprehensive panel of gene biomarkers for predicting clinical outcomes and to discover potential new therapeutic targets. Here, a multi-step bioinformatics analytic approach was developed to establish a novel prognostic scoring system for GC. We first identified 276 genes that were robustly differentially expressed between normal and GC tissues, of which, 249 were found to be significantly associated with overall survival (OS) by univariate Cox regression analysis. The biological functions of 249 genes are related to cell cycle, RNA/ncRNA process, acetylation and extracellular matrix organization. A networkmore » was generated for view of the gene expression architecture of 249 genes in 265 GCs. Finally, we applied a canonical discriminant analysis approach to identify a 53-gene signature and a prognostic scoring system was established based on a canonical discriminant function of 53 genes. The prognostic scores strongly predicted patients with GC to have either a poor or good OS. Our study raises the prospect that the practicality of GC patient prognosis can be assessed by this prognostic scoring system.« less

Environmental and forensic applications of field-portable GC-MS: an overview.

PubMed

Eckenrode, B A

2001-06-01

GC-MS can provide analytical information that is most reliable for many types of organic analyses. As field-portable GC-MS analytical systems evolve, the application scenarios have diversified as well. With the development of rugged fieldable systems, these instruments were demonstrated to be usable in the harsh environment of the jungle and in chemical demilitarization or military reconnaissance situations. Continuous unattended operations of a GC-MS for 12- or 24-hour monitoring applications in the field have been shown to be possible. A real-time algorithm strategy is proposed, which can be developed to aid in the advancement of field-portable mass spectrometry applied to chemical warfare agent analysis in military vehicles and can be used to raise the standard for field data quality. Each of these capabilities is discussed with the intent on reviewing analysis situations that can be expanded because of developments in field GC-MS instrumentation.

Identification of Shewanella baltica as the most important H2S-producing species during iced storage of Danish marine fish.

PubMed

Fonnesbech Vogel, Birte; Venkateswaran, Kasthuri; Satomi, Masataka; Gram, Lone

2005-11-01

Shewanella putrefaciens has been considered the main spoilage bacteria of low-temperature stored marine seafood. However, psychrotropic Shewanella have been reclassified during recent years, and the purpose of the present study was to determine whether any of the new Shewanella species are important in fish spoilage. More than 500 H2S-producing strains were isolated from iced stored marine fish (cod, plaice, and flounder) caught in the Baltic Sea during winter or summer time. All strains were identified as Shewanella species by phenotypic tests. Different Shewanella species were present on newly caught fish. During the warm summer months the mesophilic human pathogenic S. algae dominated the H2S-producing bacterial population. After iced storage, a shift in the Shewanella species was found, and most of the H2S-producing strains were identified as S. baltica. The 16S rRNA gene sequence analysis confirmed the identification of these two major groups. Several isolates could only be identified to the genus Shewanella level and were separated into two subgroups with low (44%) and high (47%) G+C mol%. The low G+C% group was isolated during winter months, whereas the high G+C% group was isolated on fish caught during summer and only during the first few days of iced storage. Phenotypically, these strains were different from the type strains of S. putrefaciens, S. oneidensis, S. colwelliana, and S. affinis, but the high G+C% group clustered close to S. colwelliana by 16S rRNA gene sequence comparison. The low G+C% group may constitute a new species. S. baltica, and the low G+C% group of Shewanella spp. strains grew well in cod juice at 0 degrees C, but three high G+C Shewanella spp. were unable to grow at 0 degrees C. In conclusion, the spoilage reactions of iced Danish marine fish remain unchanged (i.e., trimethylamine-N-oxide reduction and H2S production); however, the main H2S-producing organism was identified as S. baltica.

Impact of the NO-Sensitive Guanylyl Cyclase 1 and 2 on Renal Blood Flow and Systemic Blood Pressure in Mice.

PubMed

Mergia, Evanthia; Thieme, Manuel; Hoch, Henning; Daniil, Georgios; Hering, Lydia; Yakoub, Mina; Scherbaum, Christina Rebecca; Rump, Lars Christian; Koesling, Doris; Stegbauer, Johannes

2018-03-23

Nitric oxide (NO) modulates renal blood flow (RBF) and kidney function and is involved in blood pressure (BP) regulation predominantly via stimulation of the NO-sensitive guanylyl cyclase (NO-GC), existing in two isoforms, NO-GC1 and NO-GC2. Here, we used isoform-specific knockout (KO) mice and investigated their contribution to renal hemodynamics under normotensive and angiotensin II-induced hypertensive conditions. Stimulation of the NO-GCs by S -nitrosoglutathione (GSNO) reduced BP in normotensive and hypertensive wildtype (WT) and NO-GC2-KO mice more efficiently than in NO-GC1-KO. NO-induced increase of RBF in normotensive mice did not differ between the genotypes, but the respective increase under hypertensive conditions was impaired in NO-GC1-KO. Similarly, inhibition of endogenous NO increased BP and reduced RBF to a lesser extent in NO-GC1-KO than in NO-GC2-KO. These findings indicate NO-GC1 as a target of NO to normalize RBF in hypertension. As these effects were not completely abolished in NO-GC1-KO and renal cyclic guanosine monophosphate (cGMP) levels were decreased in both NO-GC1-KO and NO-GC2-KO, the results suggest an additional contribution of NO-GC2. Hence, NO-GC1 plays a predominant role in the regulation of BP and RBF, especially in hypertension. However, renal NO-GC2 appears to compensate the loss of NO-GC1, and is able to regulate renal hemodynamics under physiological conditions.

Multiresidue pesticide analysis in ginseng and spinach by nontargeted and targeted screening procedures.

PubMed

Hayward, Douglas G; Wong, Jon W; Zhang, Kai; Chang, James; Shi, Feng; Banerjee, Kaushik; Yang, Paul

2011-01-01

Five different mass spectrometers interfaced to GC or LC were evaluated for their application to targeted and nontargeted screening of pesticides in two foods, spinach and ginseng. The five MS systems were capillary GC/MS/MS, GC-high resolution time-of-flight (GC/HR-TOF)-MS, TOF-MS interfaced with a comprehensive multidimensional GC (GCxGC/TOF-MS), an MS/MS ion trap hybrid mass (qTrap) system interfaced with an ultra-performance liquid chromatograph (UPLC-qTrap), and UPLC interfaced to an orbital trap high resolution mass spectrometer (UPLC/Orbitrap HR-MS). Each MS system was tested with spinach and ginseng extracts prepared through a modified quick, easy, cheap, effective, rugged, and safe (QuEChERS) procedure. Each matrix was fortified at 10 and 50 ng/g for spinach or 25 and 100 ng/g for ginseng with subsets of 486 pesticides, isomers, and metabolites representing most pesticide classes. HR-TOF-MS was effective in a targeted search for characteristic accurate mass ions and identified 97% of 170 pesticides in ginseng at 25 ng/g. A targeted screen of either ginseng or spinach found 94-95% of pesticides fortified for analysis at 10 ng/g with GC/MS/MS or LC/MS/MS using multiple reaction monitoring (MRM) procedures. Orbitrap-MS successfully found 89% of 177 fortified pesticides in spinach at 25 ng/g using a targeted search of accurate mass pseudomolecular ions in the positive electrospray ionization mode. A comprehensive GCxGC/TOF-MS system provided separation and identification of 342 pesticides and metabolites in a single 32 min acquisition with standards. Only 67 or 81% of the pesticides were identified in ginseng and spinach matrixes at 25 ng/g or 10 ng/g, respectively. MS/MS or qTrap-MS operated in the MRM mode produced the lowest false-negative rates, at 10 ng/g. Improvements to instrumentation, methods, and software are needed for efficient use of nontargeted screens in parallel with triple quadrupole MS.

A Comprehensive Two-Dimensional Retention Time Alignment Algorithm To Enhance Chemometric Analysis of Comprehensive Two-Dimensional Separation Data

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pierce, Karisa M.; Wood, Lianna F.; Wright, Bob W.

2005-12-01

A comprehensive two-dimensional (2D) retention time alignment algorithm was developed using a novel indexing scheme. The algorithm is termed comprehensive because it functions to correct the entire chromatogram in both dimensions and it preserves the separation information in both dimensions. Although the algorithm is demonstrated by correcting comprehensive two-dimensional gas chromatography (GC x GC) data, the algorithm is designed to correct shifting in all forms of 2D separations, such as LC x LC, LC x CE, CE x CE, and LC x GC. This 2D alignment algorithm was applied to three different data sets composed of replicate GC x GCmore » separations of (1) three 22-component control mixtures, (2) three gasoline samples, and (3) three diesel samples. The three data sets were collected using slightly different temperature or pressure programs to engender significant retention time shifting in the raw data and then demonstrate subsequent corrections of that shifting upon comprehensive 2D alignment of the data sets. Thirty 12-min GC x GC separations from three 22-component control mixtures were used to evaluate the 2D alignment performance (10 runs/mixture). The average standard deviation of the first column retention time improved 5-fold from 0.020 min (before alignment) to 0.004 min (after alignment). Concurrently, the average standard deviation of second column retention time improved 4-fold from 3.5 ms (before alignment) to 0.8 ms (after alignment). Alignment of the 30 control mixture chromatograms took 20 min. The quantitative integrity of the GC x GC data following 2D alignment was also investigated. The mean integrated signal was determined for all components in the three 22-component mixtures for all 30 replicates. The average percent difference in the integrated signal for each component before and after alignment was 2.6%. Singular value decomposition (SVD) was applied to the 22-component control mixture data before and after alignment to show the restoration of trilinearity to the data, since trilinearity benefits chemometric analysis. By applying comprehensive 2D retention time alignment to all three data sets (control mixtures, gasoline samples, and diesel samples), classification by principal component analysis (PCA) substantially improved, resulting in 100% accurate scores clustering.« less

STRUCTURAL PARAMETERS FOR 10 HALO GLOBULAR CLUSTERS IN M33

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ma, Jun, E-mail: majun@nao.cas.cn

2015-05-15

In this paper, we present the properties of 10 halo globular clusters (GCs) with luminosities L ≃ 5–7 × 10{sup 5} L{sub ⊙} in the Local Group galaxy M33 using images from the Hubble Space Telescope WFPC2 in the F555W and F814W bands. We obtained the ellipticities, position angles, and surface brightness profiles for each GC. In general, the ellipticities of the M33 sample clusters are similar to those of the M31 clusters. The structural and dynamical parameters are derived by fitting the profiles to three different models combined with mass-to-light ratios (M/L values) from population-synthesis models. The structural parametersmore » include core radii, concentration, half-light radii, and central surface brightness. The dynamical parameters include the integrated cluster mass, integrated binding energy, central surface mass density, and predicted line of sight velocity dispersion at the cluster center. The velocity dispersions of the four clusters predicted here agree well with the observed dispersions by Larsen et al. The results here showed that the majority of the sample halo GCs are better fitted by both the King model and the Wilson model than the Sérsic model. In general, the properties of the clusters in M33, M31, and the Milky Way fall in the same regions of parameter spaces. The tight correlations of cluster properties indicate a “fundamental plane” for clusters, which reflects some universal physical conditions and processes operating at the epoch of cluster formation.« less

Miniaturized system of a gas chromatograph coupled with a Paul ion trap mass spectrometer

NASA Technical Reports Server (NTRS)

Shortt, B. J.; Darrach, M. R.; Holland, Paul M.; Chutjian, A.

2005-01-01

Miniature gas chromatography (GC) and miniature mass spectrometry (MS) instrumentation has been developed to identify and quantify the chemical compounds present in complex mixtures of gases. The design approach utilizes micro-GC components coupled with a Paul quadrupole ion trap (QIT) mass spectrometer. Inherent to the system are high sensitivity, good dynamic range, good QIT resolution, low GC flow-rates to minimize vacuum requirements and the need for consumables; and the use of a modular approach to adapt to volatile organic compounds dissolved in water or present in sediment. Measurements are reported on system response to gaseous species at concentrations varying over four orders of magnitude. The ability of the system to deal with complicated mixtures is demonstrated, and future improvements are discussed. The GC/QIT system described herein has a mass, volume and power that are, conservatively, one-twentieth of those of commercial off-the-shelf systems. Potential applications are to spacecraft cabin-air monitoring, robotic planetary exploration and trace-species detection for residual gas analysis and environmental monitoring.

VizieR Online Data Catalog: Wide-field photometry of the GC Palomar 5 (Ibata+, 2016)

NASA Astrophysics Data System (ADS)

Ibata, R. A.; Lewis, G. F.; Martin, N. F.

2016-05-01

The primary source of photometry for this project was obtained with the MegaCam instrument at the 3.6m Canada-France-Hawaii Telescope (CFHT) during the 2006-2008 spring observing seasons. We also secured photometric observations of the cluster and its stream using the Mosaic II imager on the Mayall 4m Telescope at Kitt Peak National Observatory (KPNO) on 2010 June 4-8. (2 data files).

Draft Genome Sequence of Janthinobacterium sp. Strain ROICE36, a Putative Secondary Metabolite-Synthesizing Bacterium Isolated from Antarctic Snow

PubMed Central

Chiriac, Cecilia; Baricz, Andreea

2018-01-01

ABSTRACT The draft genome assembly of Janthinobacterium sp. strain ROICE36 has 207 contigs, with a total genome size of 5,977,006 bp and a G+C content of 62%. Preliminary genome analysis identified 5,363 protein-coding genes and a total of 7 secondary metabolic gene clusters (encoding bacteriocins, nonribosomal peptide-synthetase [NRPS], terpene, hserlactone, and other ketide synthases). PMID:29650588

Sequencing on the SOLiD 5500xl System - in-depth characterization of the GC bias.

PubMed

Roeh, Simone; Weber, Peter; Rex-Haffner, Monika; Deussing, Jan M; Binder, Elisabeth B; Jakovcevski, Mira

2017-07-04

Different types of sequencing biases have been described and subsequently improved for a variety of sequencing systems, mostly focusing on the widely used Illumina systems. Similar studies are missing for the SOLiD 5500xl system, a sequencer which produced many data sets available to researchers today. Describing and understanding the bias is important to accurately interpret and integrate these published data in various ongoing research projects. We report a particularly strong GC bias for this sequencing system when analyzing a defined gDNA mix of 5 microbes with a wide range of different GC contents (20-72%) when comparing to the expected distribution and Illumina MiSeq data from the same DNA pool. Since we observed this bias already under PCR-free conditions, changing the PCR conditions during library preparation - a common strategy to handle bias in the Illumina system - was not relevant. Source of the bias appeared to be an uneven heat distribution during the SOLiD emulsion PCR (ePCR) - for enrichment of libraries prior loading - since ePCR in either small pouches or in 96-well plates improved the GC bias. Sequencing of chromatin immunoprecipitated DNA (ChIP-seq) is a common approach in epigenetics. ChIP-seq of the mixed source histone mark H3K9ac (acetyl Histone H3 lysine 9), typically found on promoter regions and on gene bodies, including CpG islands, performed on a SOLiD 5500xl machine, resulted in major loss of reads at GC rich loci (GC content ≥ 62%), not explained by low sequencing depth. This was improved with adaptations of the ePCR.

Population and genomic analysis of the genus Halorubrum

PubMed Central

Fullmer, Matthew S.; Soucy, Shannon M.; Swithers, Kristen S.; Makkay, Andrea M.; Wheeler, Ryan; Ventosa, Antonio; Gogarten, J. Peter; Papke, R. Thane

2014-01-01

The Halobacteria are known to engage in frequent gene transfer and homologous recombination. For stably diverged lineages to persist some checks on the rate of between lineage recombination must exist. We surveyed a group of isolates from the Aran-Bidgol endorheic lake in Iran and sequenced a selection of them. Multilocus Sequence Analysis (MLSA) and Average Nucleotide Identity (ANI) revealed multiple clusters (phylogroups) of organisms present in the lake. Patterns of intein and Clustered Regularly Interspaced Short Palindromic Repeats (CRISPRs) presence/absence and their sequence similarity, GC usage along with the ANI and the identities of the genes used in the MLSA revealed that two of these clusters share an exchange bias toward others in their phylogroup while showing reduced rates of exchange with other organisms in the environment. However, a third cluster, composed in part of named species from other areas of central Asia, displayed many indications of variability in exchange partners, from within the lake as well as outside the lake. We conclude that barriers to gene exchange exist between the two purely Aran-Bidgol phylogroups, and that the third cluster with members from other regions is not a single population and likely reflects an amalgamation of several populations. PMID:24782836

RR Lyrae stars in and around NGC 6441: signatures of dissolving cluster stars

NASA Astrophysics Data System (ADS)

Kunder, Andrea

2018-06-01

Detailed elemental abundance patterns of metal-poor ([Fe/H]~ -1 dex) stars in the Galactic bulge indicate that a number of them are consistent with globular cluster (GC) stars and may be former members of dissolved GCs. This would indicate that a few per cent of the Galactic bulge was built up from destruction and/or evaporation of globular clusters. Here an attempt is made to identify such presumptive destroyed stars originating from the massive, inner Galaxy globular cluster NGC~6441 using its rich RR Lyrae variable star (RRL) population. We present radial velocities of forty RRLs centered on the globular cluster NGC~6441. All of the 13 RRLs observed within the cluster tidal radius have velocities consistent with cluster membership, with an average radial velocity of 24 +- 5~km/s and a star-to-star scatter of 11~km/s. This includes two new RRLs that were previously not associated with the cluster. Eight RRLs with radial velocities consistent with cluster membership but up to three time the distance from the tidal radius are also reported. These potential extra-tidal RRLs also have exceptionally long periods, which is a curious characteristic of the NGC~6441 RRL population that hosts RRLs with periods longer than seen anywhere else in the Milky Way. As expected of stripped cluster stars, most are inline with the cluster's orbit. Therefore, either the tidal radius of NGC~6441 is underestimated and/or we are seeing dissolving cluster stars stemming from NGC~6441 that are building up the old spheroidal bulge. Both the mean velocity of the cluster as well as the underlying field population is consistent with belonging to an old spheroidal bulge with low rotation and high velocity dispersion that formed before the bar.

Galactic disk dynamical tracers: Open clusters and the local Milky Way rotation curve and velocity field

NASA Astrophysics Data System (ADS)

Frinchaboy, Peter Michael, III

Establishing the rotation curve of the Milky Way is one of the fundamental contributions needed to understand the Galaxy and its mass distribution. We have undertaken a systematic spectroscopic survey of open star clusters which can serve as tracers of Galactic disk dynamics. We report on our initial sample of 67 clusters for which the Hydra multi-fiber spectrographs on the WIYN and Blanco telescopes have delivered ~1-2 km s -1 radial velocities (RVs) of many dozens of stars in the fields of each cluster, which are used to derive cluster membership and bulk cluster kinematics when combined with Tycho-2 proper motions. The clusters selected for study have a broad spatial distribution in order to be sensitive to the disk velocity field in all Galactic quadrants and across a Galactocentric radius range as much as 3.0 kpc from the solar circle. Through analysis of the cluster sample, we find (1) the rotation velocity of the Local Standard of Rest (LSR) is [Special characters omitted.] km s -1 , (2 ) the local rotation curve is declining with radius having a slope of -9.1 km s -1 kpc -1 , (3) we find (using R 0 = 8.5 kpc) the following Galactic parameters: A = 17.0 km s -1 kpc -1 and B = -8.9 km s -1 kpc -1 , which using a flat rotation curve and our determined values for the rotation velocity of the LSR yields a Galaxy mass within 1.5 R 0 of M = 1.4 ± 0.2 × 10 11 [Spe cial characters omitted.] and a M/L of 9 [Special characters omitted.] . We also explore the distribution of the local velocity field and find evidence for non- circular motion due to the spiral arms. Additionally, a number of outer disk ( R gc > 12 kpc) open clusters, including Be29 and Sa1, are studied that have potentially critical leverage on radial, age and metallicity gradients in the outer Galactic disk. We find that the measured kinematics of Sa1 and Be29 are consistent with being associated with the Galactic anticenter stellar structure (GASS; or Monoceros stream), which points to a possible "accretion" origin for these and possibly other outer disk open clusters, if one believes that GASS represents an accreting dwarf galaxy system.

On the Nature of Ultra-faint Dwarf Galaxy Candidates. I. DES1, Eridanus III, and Tucana V

NASA Astrophysics Data System (ADS)

Conn, Blair C.; Jerjen, Helmut; Kim, Dongwon; Schirmer, Mischa

2018-01-01

We use deep Gemini/GMOS-S g, r photometry to study the three ultra-faint dwarf galaxy candidates DES1, Eridanus III (Eri III), and Tucana V (Tuc V). Their total luminosities, M V (DES1) = ‑1.42 ± 0.50 and M V (Eri III) = ‑2.07 ± 0.50, and mean metallicities, [{Fe}/{{H}}]=-{2.38}-0.19+0.21 and [{Fe}/{{H}}]=-{2.40}-0.12+0.19, are consistent with them being ultra-faint dwarf galaxies, as they fall just outside the 1σ confidence band of the luminosity–metallicity relation for Milky Way satellite galaxies. However, their positions in the size–luminosity relation suggest that they are star clusters. Interestingly, DES1 and Eri III are at relatively large Galactocentric distances, with DES1 located at {D}{GC}=74+/- 4 {kpc} and Eri III at {D}{GC}=91+/- 4 {kpc}. In projection, both objects are in the tail of gaseous filaments trailing the Magellanic Clouds and have similar 3D separations from the Small Magellanic Cloud (SMC): {{Δ }}{D}{SMC,{DES}1}=31.7 kpc and {{Δ }}{D}{SMC,{Eri}{III}}=41.0 kpc, respectively. It is plausible that these stellar systems are metal-poor SMC satellites. Tuc V represents an interesting phenomenon in its own right. Our deep photometry at the nominal position of Tuc V reveals a low-level excess of stars at various locations across the GMOS field without a well-defined center. An SMC Northern Overdensity–like isochrone would be an adequate match to the Tuc V color–magnitude diagram, and the proximity to the SMC (12.°1 {{Δ }}{D}{SMC,{Tuc}{{V}}}=13 kpc) suggests that Tuc V is either a chance grouping of stars related to the SMC halo or a star cluster in an advanced stage of dissolution.

Genome sequence of a cluster A13 mycobacteriophage detected in Mycobacterium phlei over a half century ago.

PubMed

Marton, Szilvia; Fehér, Enikő; Horváth, Balázs; Háber, Katalin; Somogyi, Pál; Minárovits, János; Bányai, Krisztián

2016-01-01

A phage infecting Mycobacterium phlei was isolated in 1958 from a soil sample in Hungary. Some physicochemical and biological properties of the virus were described in independent studies over the years. Here, we report the genome sequence of this early mycobacteriophage isolate. The Phlei phage genome measured 50,418 bp, had a GC content of 60.1 % and was predicted to encode 81 proteins and three tRNAs. Phylogeny of the tape measure protein revealed genetic relatedness to other early isolates of mycobacteriophages within subcluster A2. The genomic organization and genetic relationships to other strains showed that the Phlei phage belongs to a novel genetic cluster, designated A13.

Comprehensive two-dimensional gas chromatography in combination with rapid scanning quadrupole mass spectrometry in perfume analysis.

PubMed

Mondello, Luigi; Casillia, Alessandro; Tranchida, Peter Quinto; Dugo, Giovanni; Dugo, Paola

2005-03-04

Single column gas chromatography (GC) in combination with a flame ionization detector (FID) and/or a mass spectrometer is routinely employed in the determination of perfume profiles. The latter are to be considered medium to highly complex matrices and, as such, can only be partially separated even on long capillaries. Inevitably, several monodimensional peaks are the result of two or more overlapping components, often hindering reliable identification and quantitation. The present investigation is based on the use of a comprehensive GC (GC x GC) method, in vacuum outlet conditions, for the near to complete resolution of a complex perfume sample. A rapid scanning quadrupole mass spectrometry (qMS) system, employed for the assignment of GC x GC peaks, supplied high quality mass spectra. The validity of the three-dimensional (3D) GC x GC-qMS application was measured and compared to that of GC-qMS analysis on the same matrix. Peak identification, in all applications, was achieved through MS spectra library matching and the interactive use of linear retention indices (LRI).

Greenhouse Gas Analysis by GC/MS

NASA Astrophysics Data System (ADS)

Bock, E. M.; Easton, Z. M.; Macek, P.

2015-12-01

Current methods to analyze greenhouse gases rely on designated complex, multiple-column, multiple-detector gas chromatographs. A novel method was developed in partnership with Shimadzu for simultaneous quantification of carbon dioxide (CO2), methane (CH4), and nitrous oxide (N2O) in environmental gas samples. Gas bulbs were used to make custom standard mixtures by injecting small volumes of pure analyte into the nitrogen-filled bulb. Resulting calibration curves were validated using a certified gas standard. The use of GC/MS systems to perform this analysis has the potential to move the analysis of greenhouse gasses from expensive, custom GC systems to standard single-quadrupole GC/MS systems that are available in most laboratories, which wide variety of applications beyond greenhouse gas analysis. Additionally, use of mass spectrometry can provide confirmation of identity of target analytes, and will assist in the identification of unknown peaks should they be present in the chromatogram.

Case Report: GcMAF Treatment in a Patient with Multiple Sclerosis.

PubMed

Inui, Toshio; Katsuura, Goro; Kubo, Kentaro; Kuchiike, Daisuke; Chenery, Leslye; Uto, Yoshihiro; Nishikata, Takahito; Mette, Martin

2016-07-01

Gc protein-derived macrophage-activating factor (GcMAF) has various functions as an immune modulator, such as macrophage activation, anti-angiogenic activity and anti-tumor activity. Clinical trials of second-generation GcMAF demonstrated remarkable clinical effects in several types of cancers. Thus, GcMAF-based immunotherapy has a wide application for use in the treatment of many diseases via macrophage activation that can be used as a supportive therapy. Multiple sclerosis (MS) is considered to be an autoimmune disorder that affects the myelinated axons in the central nervous system (CNS). This study was undertaken to examine the effects of second-generation GcMAF in a patient with MS. This case study demonstrated that treatments of GcMAF in a patient with MS have potent therapeutic actions with early beneficial responses, especially improvement of motor dysfunction. GcMAF shows therapeutic potency in the treatment of MS. Copyright© 2016 International Institute of Anticancer Research (Dr. John G. Delinassios), All rights reserved.

Analysis of model Titan atmospheric components using ion mobility spectrometry

NASA Technical Reports Server (NTRS)

Kojiro, D. R.; Cohen, M. J.; Wernlund, R. F.; Stimac, R. M.; Humphry, D. E.; Takeuchi, N.

1991-01-01

The Gas Chromatograph-Ion Mobility Spectrometer (GC-IMS) was proposed as an analytical technique for the analysis of Titan's atmosphere during the Cassini Mission. The IMS is an atmospheric pressure, chemical detector that produces an identifying spectrum of each chemical species measured. When the IMS is combined with a GC as a GC-IMS, the GC is used to separate the sample into its individual components, or perhaps small groups of components. The IMS is then used to detect, quantify, and identify each sample component. Conventional IMS detection and identification of sample components depends upon a source of energetic radiation, such as beta radiation, which ionizes the atmospheric pressure host gas. This primary ionization initiates a sequence of ion-molecule reactions leading to the formation of sufficiently energetic positive or negative ions, which in turn ionize most constituents in the sample. In conventional IMS, this reaction sequence is dominated by the water cluster ion. However, many of the light hydrocarbons expected in Titan's atmosphere cannot be analyzed by IMS using this mechanism at the concentrations expected. Research at NASA Ames and PCP Inc., has demonstrated IMS analysis of expected Titan atmospheric components, including saturated aliphatic hydrocarbons, using two alternate sample ionizations mechanisms. The sensitivity of the IMS to hydrocarbons such as propane and butane was increased by several orders of magnitude. Both ultra dry (waterless) IMS sample ionization and metastable ionization were successfully used to analyze a model Titan atmospheric gas mixture.

Substantial Regional Variation in Substitution Rates in the Human Genome: Importance of GC Content, Gene Density, and Telomere-Specific Effects

NASA Astrophysics Data System (ADS)

Arndt, Peter F.; Hwa, Terence; Petrov, Dmitri A.

2005-06-01

This study presents the first global, 1 Mbp level analysis of patterns of nucleotide substitutions along the human lineage. The study is based on the analysis of a large amount of repetitive elements deposited into the human genome since the mammalian radiation, yielding a number of results that would have been difficult to obtain using the more conventional comparative method of analysis. This analysis revealed substantial and consistent variability of rates of substitution, with the variability ranging up to 2-fold among different regions. The rates of substitutions of C or G nucleotides with A or T nucleotides vary much more sharply than the reverse rates suggesting that much of that variation is due to differences in mutation rates rather than in the probabilities of fixation of C/G vs. A/T nucleotides across the genome. For all types of substitution we observe substantially more hotspots than coldspots, with hotspots showing substantial clustering over tens of Mbp's. Our analysis revealed that GC-content of surrounding sequences is the best predictor of the rates of substitution. The pattern of substitution appears very different near telomeres compared to the rest of the genome and cannot be explained by the genome-wide correlations of the substitution rates with GC content or exon density. The telomere pattern of substitution is consistent with natural selection or biased gene conversion acting to increase the GC-content of the sequences that are within 10-15 Mbp away from the telomere.

Differential Distribution of Type II CRISPR-Cas Systems in Agricultural and Nonagricultural Campylobacter coli and Campylobacter jejuni Isolates Correlates with Lack of Shared Environments

PubMed Central

Pearson, Bruce M.; Louwen, Rogier; van Baarlen, Peter; van Vliet, Arnoud H.M.

2015-01-01

CRISPR (clustered regularly interspaced palindromic repeats)-Cas (CRISPR-associated) systems are sequence-specific adaptive defenses against phages and plasmids which are widespread in prokaryotes. Here we have studied whether phylogenetic relatedness or sharing of environmental niches affects the distribution and dissemination of Type II CRISPR-Cas systems, first in 132 bacterial genomes from 15 phylogenetic classes, ranging from Proteobacteria to Actinobacteria. There was clustering of distinct Type II CRISPR-Cas systems in phylogenetically distinct genera with varying G+C%, which share environmental niches. The distribution of CRISPR-Cas within a genus was studied using a large collection of genome sequences of the closely related Campylobacter species Campylobacter jejuni (N = 3,746) and Campylobacter coli (N = 486). The Cas gene cas9 and CRISPR-repeat are almost universally present in C. jejuni genomes (98.0% positive) but relatively rare in C. coli genomes (9.6% positive). Campylobacter jejuni and agricultural C. coli isolates share the C. jejuni CRISPR-Cas system, which is closely related to, but distinct from the C. coli CRISPR-Cas system found in C. coli isolates from nonagricultural sources. Analysis of the genomic position of CRISPR-Cas insertion suggests that the C. jejuni-type CRISPR-Cas has been transferred to agricultural C. coli. Conversely, the absence of the C. coli-type CRISPR-Cas in agricultural C. coli isolates may be due to these isolates not sharing the same environmental niche, and may be affected by farm hygiene and biosecurity practices in the agricultural sector. Finally, many CRISPR spacer alleles were linked with specific multilocus sequence types, suggesting that these can assist molecular epidemiology applications for C. jejuni and C. coli. PMID:26338188

The distribution of HLA haplotypes in the ethnic groups that make up the Brazilian Bone Marrow Volunteer Donor Registry (REDOME).

PubMed

Halagan, Michael; Oliveira, Danielli Cristina; Maiers, Martin; Fabreti-Oliveira, Raquel A; Moraes, Maria Elisa Hue; Visentainer, Jeane Eliete Laguila; Pereira, Noemi Farah; Romero, Matilde; Cardoso, Juliana Fernandes; Porto, Luís Cristóvão

2018-04-26

The Registries of Bone Marrow Donors around the world include more than 30 million volunteer donors from 57 different countries, and were responsible for over 17,000 hematopoietic stem cell transplants in 2016. The Brazilian Bone Marrow Volunteer Donor Registry (REDOME) was established in 1993 and is the third largest registry in the world with more than 4.3 million donors. We characterized HLA allele and haplotypes frequencies from REDOME comparing them with the donor self-reported race group classification. Five-locus haplotype frequencies (A~C~B~DRB1~DQB1) were estimated for each of the six race groups, resolving phase and allelic ambiguity using the expectation-maximization (EM) algorithm. The top 100 haplotypes in the race groups were separated into eight clusters of haplotypes, based on haplotype similarity, using CLUTO. We present HLA allele and haplotype frequency data from six race groups from 2,938,259 individuals from REDOME. The most frequent haplotype was the same for all groups: A*01:01g~C*07:01g~B*08:01g~DRB1*03:01g~DQB1*02:01g. Some frequent haplotypes such as A*02:01g~C*16:01g~B*44:03~DRB1*07:01g~DQB1*02:01g was not found in people with Preta (Sub-Saharan African descent). A cluster including Branca (European) and Parda or non-informed (admixed) could be distinguished from both Preta (SubSaharan) and Indígena (Amerindian) groups, and from the Amarela (Asian) ones, which clustered with their original population. These results have implications on cross-population matching and can help in donor searches and population-based recruitment strategies.

Gametocidal chromosomes enhancing chromosome aberration in common wheat induced by 5-azacytidine.

PubMed

Su, W-Y; Cong, W-W; Shu, Y-J; Wang, D; Xu, G-H; Guo, C-H

2013-07-08

The gametocidal (Gc) chromosome from Aegilops spp induces chromosome mutation, which is introduced into common wheat as a tool of chromosome manipulation for genetic improvement. The Gc chromosome functions similar to a restriction-modification system in bacteria, in which DNA methylation is an important regulator. We treated root tips of wheat carrying Gc chromosomes with the hypomethylation agent 5-azacytidine; chromosome breakage and micronuclei were observed in these root tips. The frequency of aberrations differed in wheat containing different Gc chromosomes, suggesting different functions inducing chromosome breakage. Gc chromosome 3C caused the greatest degree of chromosome aberration, while Gc chromosome 3C(SAT) and 2C caused only slight chromosome aberration. Gc chromosome 3C induced different degrees of chromosome aberration in wheat varieties Triticum aestivum var. Chinese Spring and Norin 26, demonstrating an inhibition function in common wheat.

An Enrichment of CRISPR and Other Defense-Related Features in Marine Sponge-Associated Microbial Metagenomes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Horn, Hannes; Slaby, Beate M.; Jahn, Martin T.

Many marine sponges are populated by dense and taxonomically diverse microbial consortia. We employed a metagenomics approach to unravel the differences in the functional gene repertoire among three Mediterranean sponge species, Petrosia ficiformis, Sarcotragus foetidus, Aplysina aerophoba and seawater. Different signatures were observed between sponge and seawater metagenomes with regard to microbial community composition, GC content, and estimated bacterial genome size. Our analysis showed further a pronounced repertoire for defense systems in sponge metagenomes. Specifically, clustered regularly interspaced short palindromic repeats, restriction modification, DNA phosphorothioation and phage growth limitation systems were enriched in sponge metagenomes. These data suggest that defensemore » is an important functional trait for an existence within sponges that requires mechanisms to defend against foreign DNA from microorganisms and viruses. Furthermore, this study contributes to an understanding of the evolutionary arms race between viruses/phages and bacterial genomes and it sheds light on the bacterial defenses that have evolved in the context of the sponge holobiont.« less

An Enrichment of CRISPR and Other Defense-Related Features in Marine Sponge-Associated Microbial Metagenomes

DOE PAGES

Horn, Hannes; Slaby, Beate M.; Jahn, Martin T.; ...

2016-11-08

Many marine sponges are populated by dense and taxonomically diverse microbial consortia. We employed a metagenomics approach to unravel the differences in the functional gene repertoire among three Mediterranean sponge species, Petrosia ficiformis, Sarcotragus foetidus, Aplysina aerophoba and seawater. Different signatures were observed between sponge and seawater metagenomes with regard to microbial community composition, GC content, and estimated bacterial genome size. Our analysis showed further a pronounced repertoire for defense systems in sponge metagenomes. Specifically, clustered regularly interspaced short palindromic repeats, restriction modification, DNA phosphorothioation and phage growth limitation systems were enriched in sponge metagenomes. These data suggest that defensemore » is an important functional trait for an existence within sponges that requires mechanisms to defend against foreign DNA from microorganisms and viruses. Furthermore, this study contributes to an understanding of the evolutionary arms race between viruses/phages and bacterial genomes and it sheds light on the bacterial defenses that have evolved in the context of the sponge holobiont.« less

Complete chloroplast genome sequence of green foxtail (Setaria viridis), a promising model system for C4 photosynthesis.

PubMed

Wang, Shuo; Gao, Li-Zhi

2016-09-01

The complete chloroplast genome of green foxtail (Setaria viridis), a promising model system for C4 photosynthesis, is first reported in this study. The genome harbors a large single copy (LSC) region of 81 016 bp and a small single copy (SSC) region of 12 456  bp separated by a pair of inverted repeat (IRa and IRb) regions of 22 315 bp. GC content is 38.92%. The proportion of coding sequence is 57.97%, comprising of 111 (19 duplicated in IR regions) unique genes, 71 of which are protein-coding genes, four are rRNA genes, and 36 are tRNA genes. Phylogenetic analysis indicated that S. viridis was clustered with its cultivated species S. italica in the tribe Paniceae of the family Poaceae. This newly determined chloroplast genome will provide valuable genetic resources to assist future studies on C4 photosynthesis in grasses.

BinSanity: unsupervised clustering of environmental microbial assemblies using coverage and affinity propagation

PubMed Central

Heidelberg, John F.; Tully, Benjamin J.

2017-01-01

Metagenomics has become an integral part of defining microbial diversity in various environments. Many ecosystems have characteristically low biomass and few cultured representatives. Linking potential metabolisms to phylogeny in environmental microorganisms is important for interpreting microbial community functions and the impacts these communities have on geochemical cycles. However, with metagenomic studies there is the computational hurdle of ‘binning’ contigs into phylogenetically related units or putative genomes. Binning methods have been implemented with varying approaches such as k-means clustering, Gaussian mixture models, hierarchical clustering, neural networks, and two-way clustering; however, many of these suffer from biases against low coverage/abundance organisms and closely related taxa/strains. We are introducing a new binning method, BinSanity, that utilizes the clustering algorithm affinity propagation (AP), to cluster assemblies using coverage with compositional based refinement (tetranucleotide frequency and percent GC content) to optimize bins containing multiple source organisms. This separation of composition and coverage based clustering reduces bias for closely related taxa. BinSanity was developed and tested on artificial metagenomes varying in size and complexity. Results indicate that BinSanity has a higher precision, recall, and Adjusted Rand Index compared to five commonly implemented methods. When tested on a previously published environmental metagenome, BinSanity generated high completion and low redundancy bins corresponding with the published metagenome-assembled genomes. PMID:28289564

COSMIC-LAB: Double BSS sequences as signatures of the Core Collapse phenomenon in star clusters.

NASA Astrophysics Data System (ADS)

Ferraro, Francesco

2011-10-01

Globular Clusters {GCs} are old stellar systems tracing key stages of the star formation and chemical enrichment history of the early Universe and the galaxy assembly phase. As part of a project {COSMIC-LAB} aimed at using GCs as natural laboratories to study the complex interplay between dynamics and stellar evolution, here we present a proposal dealing with the role of Blue Straggler Stars {BSS}.BSS are core-hydrogen burning stars more massive than the main-sequence turnoff population. The canonical scenarios for BSS formation are either the mass transfer between binary companions, or stellar mergers induced by collisions. We have recently discovered two distinct and parallel sequences of BSS in the core of M30 {Ferraro et al. 2009, Nature 462, 1082}. We suggested that each of the two sequences is populated by BSS formed by one of the two processes, both triggered by the cluster core collapse, that, based on the observed BSS properties, must have occurred 1-2 Gyr ago. Following this scenario, we have identified a powerful "clock" to date the occurrence of this key event in the GC history.Here we propose to secure WFC3 images of 4 post-core collapse GCs, reaching S/N=200 at the BSS magnitude level, in order to determine the ubiquity of the BSS double sequence and calibrate the "dynamical clock". This requires very high spatial resolution and very high precision photometry capabilities that are unique to the HST. The modest amount of requested time will have a deep impact on the current and future generations of dynamical evolutionary models of collisional stellar systems.

Seasonal variations in the composition of the essential oils of Lavandula angustifolia (Lamiacae).

PubMed

Lakusić, Branislava; Lakusić, Dmitar; Ristić, Mihailo; Marcetić, Mirjana; Slavkovska, Violeta

2014-06-01

Seasonal variations in the composition of the essential oils obtained from the same individual (of the same genotype) of Lavandula angustifolia cultivated in Belgrade were determined by GC and GC/MS. The main constituents were 1,8-cineole (7.1-48.4%), linalool (0.1-38.7%), bomeol (10.9-27.7%), beta-phellandrene (0.5-21.2%) and camphor (1.5-15.8%). Cluster analysis showed that the 21 samples collected each month during the vegetation cycle were separable into three main clades with different compositions of essential oils. In the shoots with flowers, inflorescences and fruits of clade I, linalool is dominant, in the young leaves before flowering and old leaves of clade II, 1,8-cineole is dominant. In the young and incompletely developed leaves of clade III, beta-phellandrene is dominant. The composition of the essential oils of lavender depended on the plant part and the stage of development.

Discrimination of honeys using colorimetric sensor arrays, sensory analysis and gas chromatography techniques.

PubMed

Tahir, Haroon Elrasheid; Xiaobo, Zou; Xiaowei, Huang; Jiyong, Shi; Mariod, Abdalbasit Adam

2016-09-01

Aroma profiles of six honey varieties of different botanical origins were investigated using colorimetric sensor array, gas chromatography-mass spectrometry (GC-MS) and descriptive sensory analysis. Fifty-eight aroma compounds were identified, including 2 norisoprenoids, 5 hydrocarbons, 4 terpenes, 6 phenols, 7 ketones, 9 acids, 12 aldehydes and 13 alcohols. Twenty abundant or active compounds were chosen as key compounds to characterize honey aroma. Discrimination of the honeys was subsequently implemented using multivariate analysis, including hierarchical clustering analysis (HCA) and principal component analysis (PCA). Honeys of the same botanical origin were grouped together in the PCA score plot and HCA dendrogram. SPME-GC/MS and colorimetric sensor array were able to discriminate the honeys effectively with the advantages of being rapid, simple and low-cost. Moreover, partial least squares regression (PLSR) was applied to indicate the relationship between sensory descriptors and aroma compounds. Copyright © 2016 Elsevier Ltd. All rights reserved.

Comparison between cachaça and rum using pattern recognition methods.

PubMed

Cardoso, Daniel R; Andrade-Sobrinho, Luiz G; Leite-Neto, Alexandre F; Reche, Roni V; Isique, William D; Ferreira, Marcia M C; Lima-Neto, Benedito S; Franco, Douglas W

2004-06-02

The differentiation between cachaça and rum using analytical data referred to alcohols (methanol, propanol, isobutanol, and isopentanol), acetaldehyde, ethyl acetate, organic acids (octanoic acid, decanoic acid, and dodecanoic acid), metals (Al, Ca, Co, Cu, Cr, Fe, Mg, Mn, Ni, Na, and Zn), and polyphenols (protocatechuic acid, sinapaldehyde, syringaldehyde, ellagic acid, syringic acid, gallic acid, (-)-epicatechin, vanillic acid, vanillin, p-coumaric acid, coniferaldehyde, coniferyl alcohol, kaempferol, and quercetin) is described. The organic and metal analyte contents were determined in 18 cachaça and 21 rum samples using chromatographic methods (GC-MS, GC-FID, and HPLC-UV-vis) and inductively coupled plasma atomic emission spectrometry, respectively. The analytical data of the above compounds, when treated by principal component analysis, hierarchical cluster analysis, discriminant analysis, and K-nearest neighbor analysis, provide a very good discrimination between the two classes of beverages.

The Effect of Harvesting on the Composition of Essential Oils from Five Varieties of Ocimum basilicum L. Cultivated in the Island of Kefalonia, Greece

PubMed Central

Tsasi, Gerasimia; Mailis, Theofilos; Daskalaki, Artemis; Sakadani, Eleni; Razis, Panagis; Samaras, Yiannis; Skaltsa, Helen

2017-01-01

Five varieties of Ocimum basilicum L. namely lettuce, cinnamon, minimum, latifolia, and violetto were separately cultivated in field and greenhouse in the island Kefalonia (Greece). The effect of successive harvesting to the essential oil content was evaluated. In total 23 samples of essential oils (EOs) were analyzed by GC-FID and GC-MS. Ninety-six constituents, which accounted for almost 99% of the oils, were identified. Cluster analysis was performed for all of the varieties in greenhouse and field conditions, in order to investigate the possible differentiation on the chemical composition of the essential oils, obtained between harvests during growing period. Each basil variety showed a unique chemical profile, but also the essential oil composition within each variety seems to be differentiated, affected by the harvests and the cultivation site. PMID:28927018

Comparison of the BD Viper System with XTR Technology to the Gen-Probe APTIMA COMBO 2 Assay using the TIGRIS DTS system for the detection of Chlamydia trachomatis and Neisseria gonorrhoeae in urine specimens.

PubMed

Mushanski, Linda M; Brandt, Ken; Coffin, Nicolette; Levett, Paul N; Horsman, Gregory B; Rank, Elliot L

2012-07-01

Performances of the BD ProbeTec Chlamydia trachomatis (CT)/Neisseria Gonorrhoeae (GC) Q(x) Amplified DNA Assay reagents on a BD Viper System with XTR Technology and APTIMA COMBO 2 Assay reagents on a TIGRIS DTS platform, for detection of both CT and GC were compared. A total of 1018 first-void urine specimens were tested for the presence of CT and GC DNA using the 2 assays. CT was detected in 143 specimens (14%). Eight specimens exhibited discordant results, and they were divided equally between the 2 assays. Based on the original results, the overall agreement for CT was 99.2%, with 97.1% and 99.5% in agreement with positive and negative specimens, respectively. Cohen's Kappa was 0.967. GC was detected in 27 specimens (2.6%). Two specimens exhibited discordant results, and they were divided equally between the 2 assays. Based on the original results, the overall agreement was 99.8%, with 96.2% and 99.9% in agreement for positive and negative specimens, respectively. Cohen's Kappa was 0.961. There was a high level of agreement between the systems for both CT and GC detection.

Midbrain interaction with the hypothalamus in expression of aggressive behavior in cats.

PubMed

Romaniuk, A; Golebiewski, H

1977-01-01

The effects of injections of M- and N-cholinergic blocking agents into the antero-medial hypothalamus (HM) and the midbrain central gray (GC) on the aggressive behavior of cats, evoked by microinjections of carbachol into those areas, were investigated in chronic experiments. The influence of pharmacological suppression of the M-cholinergic system in HM on the carbachol-induced aggression response from GC and vice versa was also studied. In the experiments a quantitative method was applied for measuring the specific vocalization - growling, which is a characteristic of aggressive behavior. In the HM and GC areas of the cat the N- and the M-cholinergic systems participated in the control of aggressive behavior, but the M-component dominated in the process. The suppression of M-cholinergic system in GC prevented the appearance of aggressive behavior evoked by injections of carbachol into HM, and the M-cholinergic blockade in HM reduced (by 90 percent) the aggression response evoked by the injections of carbachol into GC. It is concluded that a concurrent action of the hypothalamic and the midbrain cholinergic systems is necessary for the appearance of a fully expressed aggressive behavior. The hypothalamus and the midbrain are probably links of the same functional circuit, and that the control of aggressive behavior is based on a circulatory action between these structures.

Protein encoding genes in an ancient plant: analysis of codon usage, retained genes and splice sites in a moss, Physcomitrella patens

PubMed Central

Rensing, Stefan A; Fritzowsky, Dana; Lang, Daniel; Reski, Ralf

2005-01-01

Background The moss Physcomitrella patens is an emerging plant model system due to its high rate of homologous recombination, haploidy, simple body plan, physiological properties as well as phylogenetic position. Available EST data was clustered and assembled, and provided the basis for a genome-wide analysis of protein encoding genes. Results We have clustered and assembled Physcomitrella patens EST and CDS data in order to represent the transcriptome of this non-seed plant. Clustering of the publicly available data and subsequent prediction resulted in a total of 19,081 non-redundant ORF. Of these putative transcripts, approximately 30% have a homolog in both rice and Arabidopsis transcriptome. More than 130 transcripts are not present in seed plants but can be found in other kingdoms. These potential "retained genes" might have been lost during seed plant evolution. Functional annotation of these genes reveals unequal distribution among taxonomic groups and intriguing putative functions such as cytotoxicity and nucleic acid repair. Whereas introns in the moss are larger on average than in the seed plant Arabidopsis thaliana, position and amount of introns are approximately the same. Contrary to Arabidopsis, where CDS contain on average 44% G/C, in Physcomitrella the average G/C content is 50%. Interestingly, moss orthologs of Arabidopsis genes show a significant drift of codon fraction usage, towards the seed plant. While averaged codon bias is the same in Physcomitrella and Arabidopsis, the distribution pattern is different, with 15% of moss genes being unbiased. Species-specific, sensitive and selective splice site prediction for Physcomitrella has been developed using a dataset of 368 donor and acceptor sites, utilizing a support vector machine. The prediction accuracy is better than those achieved with tools trained on Arabidopsis data. Conclusion Analysis of the moss transcriptome displays differences in gene structure, codon and splice site usage in comparison with the seed plant Arabidopsis. Putative retained genes exhibit possible functions that might explain the peculiar physiological properties of mosses. Both the transcriptome representation (including a BLAST and retrieval service) and splice site prediction have been made available on , setting the basis for assembly and annotation of the Physcomitrella genome, of which draft shotgun sequences will become available in 2005. PMID:15784153

Ca2+-sensors and ROS-GC: interlocked sensory transduction elements: a review

PubMed Central

Sharma, Rameshwar K.; Duda, Teresa

2012-01-01

From its initial discovery that ROS-GC membrane guanylate cyclase is a mono-modal Ca2+-transduction system linked exclusively with the photo-transduction machinery to the successive finding that it embodies a remarkable bimodal Ca2+ signaling device, its widened transduction role in the general signaling mechanisms of the sensory neuron cells was envisioned. A theoretical concept was proposed where Ca2+-modulates ROS-GC through its generated cyclic GMP via a nearby cyclic nucleotide gated channel and creates a hyper- or depolarized sate in the neuron membrane (Ca2+ Binding Proteins 1:1, 7–11, 2006). The generated electric potential then becomes a mode of transmission of the parent [Ca2+]i signal. Ca2+ and ROS-GC are interlocked messengers in multiple sensory transduction mechanisms. This comprehensive review discusses the developmental stages to the present status of this concept and demonstrates how neuronal Ca2+-sensor (NCS) proteins are the interconnected elements of this elegant ROS-GC transduction system. The focus is on the dynamism of the structural composition of this system, and how it accommodates selectivity and elasticity for the Ca2+ signals to perform multiple tasks linked with the SENSES of vision, smell, and possibly of taste and the pineal gland. An intriguing illustration is provided for the Ca2+ sensor GCAP1 which displays its remarkable ability for its flexibility in function from being a photoreceptor sensor to an odorant receptor sensor. In doing so it reverses its function from an inhibitor of ROS-GC to the stimulator of ONE-GC membrane guanylate cyclase. PMID:22509149

Meta-Analysis of the Reduction of Norovirus and Male-Specific Coliphage Concentrations in Wastewater Treatment Plants.

PubMed

Pouillot, Régis; Van Doren, Jane M; Woods, Jacquelina; Plante, Daniel; Smith, Mark; Goblick, Gregory; Roberts, Christopher; Locas, Annie; Hajen, Walter; Stobo, Jeffrey; White, John; Holtzman, Jennifer; Buenaventura, Enrico; Burkhardt, William; Catford, Angela; Edwards, Robyn; DePaola, Angelo; Calci, Kevin R

2015-07-01

Human norovirus (NoV) is the leading cause of foodborne illness in the United States and Canada. Wastewater treatment plant (WWTP) effluents impacting bivalve mollusk-growing areas are potential sources of NoV contamination. We have developed a meta-analysis that evaluates WWTP influent concentrations and log10 reductions of NoV genotype I (NoV GI; in numbers of genome copies per liter [gc/liter]), NoV genotype II (NoV GII; in gc/liter), and male-specific coliphage (MSC; in number of PFU per liter), a proposed viral surrogate for NoV. The meta-analysis included relevant data (2,943 measurements) reported in the scientific literature through September 2013 and previously unpublished surveillance data from the United States and Canada. Model results indicated that the mean WWTP influent concentration of NoV GII (3.9 log10 gc/liter; 95% credible interval [CI], 3.5, 4.3 log10 gc/liter) is larger than the value for NoV GI (1.5 log10 gc/liter; 95% CI, 0.4, 2.4 log10 gc/liter), with large variations occurring from one WWTP to another. For WWTPs with mechanical systems and chlorine disinfection, mean log10 reductions were -2.4 log10 gc/liter (95% CI, -3.9, -1.1 log10 gc/liter) for NoV GI, -2.7 log10 gc/liter (95% CI, -3.6, -1.9 log10 gc/liter) for NoV GII, and -2.9 log10 PFU per liter (95% CI, -3.4, -2.4 log10 PFU per liter) for MSCs. Comparable values for WWTPs with lagoon systems and chlorine disinfection were -1.4 log10 gc/liter (95% CI, -3.3, 0.5 log10 gc/liter) for NoV GI, -1.7 log10 gc/liter (95% CI, -3.1, -0.3 log10 gc/liter) for NoV GII, and -3.6 log10 PFU per liter (95% CI, -4.8, -2.4 PFU per liter) for MSCs. Within WWTPs, correlations exist between mean NoV GI and NoV GII influent concentrations and between the mean log10 reduction in NoV GII and the mean log10 reduction in MSCs. Copyright © 2015, American Society for Microbiology. All Rights Reserved.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hayes, Christian R.; Friel, Eileen D.; Slack, Taleah J.

We present new photometric and spectroscopic data of the old open cluster Czernik 30. Wide field BVI photometry allows us to correct for the high field contamination by statistical subtraction to produce a color–magnitude diagram (CMD) that clearly reveals the cluster sequence. From spectra of stars in the cluster field obtained with the Hydra spectrograph on the Wisconsin-Indiana-Yale-NOAO 3.5 m telescope we determine a mean cluster velocity of +79.9 ± 1.5 km s{sup −1} and provide membership information that helps further define the cluster giant branch and red clump. Stellar abundances for the brighter giants in the cluster indicate a mean metallicity ofmore » [Fe/H] = −0.2 ± 0.15. Fitting theoretical isochrones to the CMD we determine the following properties of Czernik 30: age = 2.8 ± 0.3 Gyr, (m − M){sub v} = 14.8 ± 0.1, E(B − V) = 0.24 ± 0.06, and E(V − I) = 0.36 ± 0.04. Czernik 30 is an old, sub-solar metallicity cluster located at a Galactocentric radius of R{sub gc}  ∼ 13.3 kpc. Given its age and position just beyond the transition to a flat abundance gradient seen in the open cluster population, Czernik 30 provides an interesting target for future observations.« less

VizieR Online Data Catalog: XXL Survey: First results (Pierre+, 2016)

NASA Astrophysics Data System (ADS)

Pierre, M.; Pacaud, F.; Adami, C.; Alis, S.; Altieri, B.; Baran, B.; Benoist, C.; Birkinshaw, M.; Bongiorno, A.; Bremer, M. N.; Brusa, M.; Butler, A.; Ciliegi, P.; Chiappetti, L.; Clerc, N.; Corasaniti, P. S.; Coupon, J.; De Breuck, C.; Democles, J.; Desai, S.; Delhaize, J.; Devriendt, J.; Dubois, Y.; Eckert, D.; Elyiv, A.; Ettori, S.; Evrard, A.; Faccioli, L.; Farahi, A.; Ferrari, C.; Finet, F.; Fotopoulou, S.; Fourmanoit, N.; Gandhi, P.; Gastaldello, F.; Gastaud, R.; Georgantopoulos, I.; Giles, P.; Guennou, L.; Guglielmo, V.; Horellou, C.; Husband, K.; Huynh, M.; Iovino, A.; Kilbinger, M.; Koulouridis, E.; Lavoie, S.; Le Brun, A. M. C.; Lefevre, J. P.; Lidman, C.; Lieu, M.; Lin, C. A.; Mantz, A.; Maughan, B. J.; Maurogordato, S.; McCarthy, I. G.; McGee, S.; Melin, J. B.; Melnyk, O.; Menanteau, F.; Novak, M.; Paltani, S.; Plionis, M.; Poggianti, B. M.; Pomarede, D.; Pompei, E.; Ponman, T. J.; Ramos-Ceja, M. E.; Ranalli, P.; Rapetti, D.; Raychaudury, S.; Reiprich, T. H.; Rottgering, H.; Rozo, E.; Ryko, E.; Sadibekova, T.; Santos, J.; Sauvageot, J. L.; Schimd, C.; Sereno, M.; Smith, G. P.; Smolcic, V.; Snowden, S.; Spergel, D.; Stanford, S.; Surdej, J.; Valageas, P.; Valotti, A.; Valtchanov, I.; Vignali, C.; Willis, J.; Ziparo, F.

2016-03-01

Paper I. Scientific motivations - XMM-Newton observing plan. Follow-up observations and simulation programme. The table xxlpoint.dat is a list of all XMM survey-type observations (<=AO-10) in the XXL fields, providing the match between the internal naming and the ESA XXM log,the coordinates and useful exposure times of the XMM pointings, their quality and ancillary information. Paper II. The bright cluster sample: catalogue and luminosity function. Paper III. Luminosity-temperature relation of the bright cluster sample. Paper IV. Mass-temperature relation of the bright cluster sample. This article presents the XXL bright cluster sample, a subsample of 100 galaxy clusters selected from the full XXL catalogue by setting a lower limit of 3*10-14erg/cm2/s on the source flux within a 1' aperture. The selection function was estimated using a mixture of Monte Carlo simulations and analytical recipes that closely reproduce the source selection process. An extensive spectroscopic follow-up provided redshifts for 97 of the 100 clusters. We derived accurate X-ray parameters for all the sources. Scaling relations were self-consistently derived from the same sample in other publications of the series. On this basis, we study the number density, luminosity function, and spatial distribution of the sample. The bright cluster sample consists of systems with masses between M500=7*10+14 and 3*10+14Mȯ, mostly located between z=0.1 and 0.5. The observed sky density of clusters is slightly below the predictions from the WMAP9 model, and significantly below the prediction from the Planck 2015 cosmology. In general, within the current uncertainties of the cluster mass calibration, models with higher values of σ8 and/or ΩM appear more difficult to accommodate. We provide tight constraints on the cluster differential luminosity function and find no hint of evolution out to z~1. We also find strong evidence for the presence of large-scale structures in the XXL bright cluster sample and identify five new superclusters. We provide the XXL-100-GC catalogue (xxl100gc.dat), the master catalogue of the 100 brightest galaxy clusters from the XXL Survey. This catalogue summarizes all the information published on this sample by the XXL collaboration, which were initially distributed over several articles. It contains the sources positions, redshifts, fluxes and mass estimates published in Appendix D of paper II, combined with luminosities and temperatures from Table 1 of paper III, as well as gas masses from Table A.1 of paper XIII. Paper VI. The 1000 brightest X-ray point sources. We provide the XXL1000AGN catalogue (xxl1000a.dat), the first catalogue release of the XXL point source catalog, detected in the 2-10keV energy band. The catalogue contains the 1000 brightest sources, at the flux limit of F[2-10 keV]=4.8 10-14erg/s/cm2. We provide derived X-ray spectral parameters, and counterpart properties including four optical magnitudes, photometric and spectroscopic redshift estimates. We also provide the best photometric redshift class based on machine learning classification and the probability for a source to be a star or a photometric redshift outlier. Paper IX. Optical overdensity and radio continuum analysis of a supercluster at z=0.43. The table xxl_vla.dat contains the full source catalogue of all 155 radio sources detected with S/N>=6 in the Very Large Array 3GHz continuum survey of the XXL-North field. The observations covered the 0.7x0.7 square degrees subarea of the 25 square degree XXL-North field. The radio data has an angular resolution of 3.2x1.9 square arcsec and a mean rms of 20uJy per beam. There are 25 resolved sources, of which 8 are multicomponent objects. Paper XI. ATCA 2.1 GHz continuum observations. The table xxl_atca.dat contains the full source catalogue of all 1389 radio sources detected with S/N>=5 in the Australia Telescope Compact Array 2.1GHz continuum pilot survey of the XXL-South field. The observations covered the inner 6.5 square degrees of the 25 square degree XXL-South field. The radio data has an angular resolution of 4.7x4.2 square arcsec and a median rms of 50uJy per beam. There are 305 resolved sources, of which 77 are multicomponent objects. The table contains various observed parameters of the radio sources, such as position, peak flux density and signal-to-noise ratio. Paper XIV. AAOmega redshifts for the southern XXL field. We present a catalogue (xxlaaoz.dat) containing the redshifts of 3660 X-ray selected targets in the XXL southern field. The redshifts were obtained with the AAOmega spectrograph and 2dF fibre positioner on the Anglo-Australian Telescope. The catalogue contains 1515 broad line AGN, 528 stars, and redshifts for 41 out of the 49 brightest X-ray selected clusters in the XXL southern field. Paper XV. Evidence for dry merger driven BCG growth in XXL-100-GC X-ray clusters Given the availability of good quality multiband photometry together with photometric and spectroscopic redshifts to z<1, a simple set of criteria can be used to identify BCGs. For the present work, we define a BCG as: - the brightest galaxy in z-band, - within 0.5xr500 of the cluster X-ray centroid, - with a redshift that is consistent with that of the cluster as determined from all the redshifts available around the X-ray centroid. Our final sample (xxl100bc.dat) consists of 85 clusters, 45 of which are in the Northern field and 40 in the Southern field. (9 data files).

Evaluation of the matrix effect on gas chromatography--mass spectrometry with carrier gas containing ethylene glycol as an analyte protectant.

PubMed

Fujiyoshi, Tomoharu; Ikami, Takahito; Sato, Takashi; Kikukawa, Koji; Kobayashi, Masato; Ito, Hiroshi; Yamamoto, Atsushi

2016-02-19

The consequences of matrix effects in GC are a major issue of concern in pesticide residue analysis. The aim of this study was to evaluate the applicability of an analyte protectant generator in pesticide residue analysis using a GC-MS system. The technique is based on continuous introduction of ethylene glycol into the carrier gas. Ethylene glycol as an analyte protectant effectively compensated the matrix effects in agricultural product extracts. All peak intensities were increased by this technique without affecting the GC-MS performance. Calibration curves for ethylene glycol in the GC-MS system with various degrees of pollution were compared and similar response enhancements were observed. This result suggests a convenient multi-residue GC-MS method using an analyte protectant generator instead of the conventional compensation method for matrix-induced response enhancement adding the mixture of analyte protectants into both neat and sample solutions. Copyright © 2016 Elsevier B.V. All rights reserved.

OPTIMIZATION OF HIGH-SPEED GC/TOFMS FOR METHOD TO-14 ANALYSIS

EPA Science Inventory

A fast GC/MS system (FGCMS) consisting of a high-speed gas chromatograph equipped with a narrow bandwidth injection accessory and a time-of-flight mass spectrometer detector is being optimized for analysis of Method TO-14 target compounds. The system consists entirely of comm...

AUTOMATED SOLID PHASE EXTRACTION GC/MS FOR ANALYSIS OF SEMIVOLATILES IN WATER AND SEDIMENTS

EPA Science Inventory

Data is presented on the development of a new automated system combining solid phase extraction (SPE) with GC/MS spectrometry for the single-run analysis of water samples containing a broad range of organic compounds. The system uses commercially available automated in-line sampl...

Portable gas chromatograph-mass spectrometer

DOEpatents

Andresen, Brian D.; Eckels, Joel D.; Kimmons, James F.; Myers, David W.

1996-01-01

A gas chromatograph-mass spectrometer (GC-MS) for use as a field portable organic chemical analysis instrument. The GC-MS is designed to be contained in a standard size suitcase, weighs less than 70 pounds, and requires less than 600 watts of electrical power at peak power (all systems on). The GC-MS includes: a conduction heated, forced air cooled small bore capillary gas chromatograph, a small injector assembly, a self-contained ion/sorption pump vacuum system, a hydrogen supply, a dual computer system used to control the hardware and acquire spectrum data, and operational software used to control the pumping system and the gas chromatograph. This instrument incorporates a modified commercial quadrupole mass spectrometer to achieve the instrument sensitivity and mass resolution characteristic of laboratory bench top units.

Biomolecular characterization of wild sicilian oregano: phytochemical screening of essential oils and extracts, and evaluation of their antioxidant activities.

PubMed

Tuttolomondo, Teresa; La Bella, Salvatore; Licata, Mario; Virga, Giuseppe; Leto, Claudio; Saija, Antonella; Trombetta, Domenico; Tomaino, Antonio; Speciale, Antonio; Napoli, Edoardo M; Siracusa, Laura; Pasquale, Andrea; Curcuruto, Giusy; Ruberto, Giuseppe

2013-03-01

An extensive survey of wild Sicilian oregano was made. A total of 57 samples were collected from various sites, followed by taxonomic characterization from an agronomic perspective. Based on morphological and production characteristics obtained from the 57 samples, cluster analysis was used to divide the samples into homogeneous groups, to identify the best biotypes. All samples were analyzed for their phytochemical content, applying a cascade-extraction protocol and hydrodistillation, to obtain the non volatile components and the essential oils, respectively. The extracts contained thirteen polyphenol derivatives, i.e., four flavanones, seven flavones, and two organic acids. Their qualitative and quantitative characterization was carried out by LC/MS analyses. The essential oils were characterized using a combination of GC-FID and GC/MS analyses; a total of 81 components were identified. The major components of the oils were thymol, p-cymene, and γ-terpinene. Cluster analysis was carried out on both phytochemical profiles and resulted in the division of the oregano samples into different chemical groups. The antioxidant activity of the essential oils and extracts was investigated by the Folin-Ciocalteau (FC) colorimetric assay, by UV radiation-induced peroxidation in liposomal membranes (UV-IP test), and by determining the O(2)(∙-)-scavenging activity. Copyright © 2013 Verlag Helvetica Chimica Acta AG, Zürich.

Essential Oil Composition of Pinus peuce Griseb. Needles and Twigs from Two National Parks of Kosovo

PubMed Central

Hajdari, Avni; Mustafa, Behxhet; Selimi, Hyrmete; Veselaj, Zeqir; Breznica, Pranvera; Novak, Johannes

2016-01-01

The principal aim of this study was to analyze the chemical composition and qualitative and quantitative variability of essential oils obtained from seven naturally grown populations of the Pinus peuce Grisebach, Pinaceae in Kosovo. Plant materials were collected from three populations in the Sharri National Park and from four other populations in the Bjeshkët e Nemuna National Park, in Kosovo. Essential oils were obtained by steam distillation and analyzed by GC-FID (Gas Chromatography-Flame Ionization Detection) and GC-MS (Gas Chromatography-Mass Spectrometry). The results showed that the yield of essential oils (v/w dry weight) varied depending on the origin of population and the plant organs and ranged from 0.7 to 3.3%. In total, 51 compounds were identified. The main compounds were α-pinene (needles: 21.6–34.9%; twigs: 11.0–24%), β-phellandrene (needles: 4.1–27.7; twigs: 29.0–49.8%), and β-pinene (needles: 10.0–16.1; twigs: 6.9–20.7%). HCA (Hierarchical Cluster Analysis) and PCA (Principal Component Analyses) were used to assess geographical variations in essential oil composition. Statistical analysis showed that the analyzed populations are grouped in three main clusters which seem to reflect microclimatic conditions on the chemical composition of the essential oils. PMID:27579344

A highly divergent gene cluster in honey bees encodes a novel silk family.

PubMed

Sutherland, Tara D; Campbell, Peter M; Weisman, Sarah; Trueman, Holly E; Sriskantha, Alagacone; Wanjura, Wolfgang J; Haritos, Victoria S

2006-11-01

The pupal cocoon of the domesticated silk moth Bombyx mori is the best known and most extensively studied insect silk. It is not widely known that Apis mellifera larvae also produce silk. We have used a combination of genomic and proteomic techniques to identify four honey bee fiber genes (AmelFibroin1-4) and two silk-associated genes (AmelSA1 and 2). The four fiber genes are small, comprise a single exon each, and are clustered on a short genomic region where the open reading frames are GC-rich amid low GC intergenic regions. The genes encode similar proteins that are highly helical and predicted to form unusually tight coiled coils. Despite the similarity in size, structure, and composition of the encoded proteins, the genes have low primary sequence identity. We propose that the four fiber genes have arisen from gene duplication events but have subsequently diverged significantly. The silk-associated genes encode proteins likely to act as a glue (AmelSA1) and involved in silk processing (AmelSA2). Although the silks of honey bees and silkmoths both originate in larval labial glands, the silk proteins are completely different in their primary, secondary, and tertiary structures as well as the genomic arrangement of the genes encoding them. This implies independent evolutionary origins for these functionally related proteins.

Evidence of differential tidal effects in the old globular cluster population of the Large Magellanic Cloud

NASA Astrophysics Data System (ADS)

Piatti, A. E.; Mackey, A. D.

2018-04-01

We present for the first time extended stellar density and/or surface brightness radial profiles for almost all the known Large Magellanic Cloud (LMC) old globular clusters (GCs). These were built from DECam images and reach out to ˜ 4 times the GCs' tidal radii. The background subtracted radial profiles reveal that the GCs located closer than ˜ 5 kpc from the LMC centre contain an excess of stars in their outermost regions with respect to the stellar density expected from a King profile. Such a residual amount of stars - not seen in GCs located farther than ˜ 5 kpc from the LMC centre-, as well as the GCs' dimensions, show a clear dependence with the GCs' positions in the galaxy, in the sense that, the farther the GC from the centre of the LMC, the larger both the excess of stars in its outskirts and size. Although the masses of GCs located inside and outside ˜ 5 kpc are commensurate, the outermost regions of GCs located closer than ˜ 5 kpc from the LMC centre appear to have dynamically evolved more quickly. These outcomes can be fully interpreted in the light of the known GC radial velocity disc-like kinematics, from which GCs have been somehow mostly experiencing the influence of the LMC gravitational field at their respective mean distances from the LMC centre.

The Blue Straggler Star Population in NGC 1261: Evidence for a Post-core-collapse Bounce State

NASA Astrophysics Data System (ADS)

Simunovic, Mirko; Puzia, Thomas H.; Sills, Alison

2014-11-01

We present a multi-passband photometric study of the Blue Straggler Star (BSS) population in the Galactic globular cluster (GC) NGC 1261, using available space- and ground-based survey data. The inner BSS population is found to have two distinct sequences in the color-magnitude diagram (CMD), similar to double BSS sequences detected in other GCs. These well defined sequences are presumably linked to single short-lived events such as core collapse, which are expected to boost the formation of BSSs. In agreement with this, we find a BSS sequence in NGC 1261 which can be well reproduced individually by a theoretical model prediction of a 2 Gyr old population of stellar collision products, which are expected to form in the denser inner regions during short-lived core contraction phases. Additionally, we report the occurrence of a group of BSSs with unusually blue colors in the CMD, which are consistent with a corresponding model of a 200 Myr old population of stellar collision products. The properties of the NGC 1261 BSS populations, including their spatial distributions, suggest an advanced dynamical evolutionary state of the cluster, but the core of this GC does not show the classical signatures of core collapse. We argue that these apparent contradictions provide evidence for a post-core-collapse bounce state seen in dynamical simulations of old GCs.

A Differential Chemical Abundance Scale for the Globular Cluster M5

NASA Astrophysics Data System (ADS)

Koch, Andreas; McWilliam, Andrew

2010-06-01

We present LTE chemical abundances for five red giants and one AGB star in the Galactic globular cluster (GC) M5 based on high-resolution spectroscopy using the Magellan Inamori Kyocera Echelle spectrograph on the Magellan 6.5 m Clay telescope. Our results are based on a line-by-line differential abundance analysis relative to the well-studied red giant Arcturus. The stars in our sample that overlap with existing studies in the literature are consistent with published values for [Fe/H] and agree to within typically 0.04 dex for the α-elements. Most deviations can be assigned to varying analysis techniques in the literature. This strengthens our newly established differential GC abundance scale and advocates future use of this method. In particular, we confirm a mean [Fe I/H] of -1.33 ± 0.03 (stat.) ±0.03 (sys.) dex and also reproduce M5's enhancement in the α-elements (O, Mg, Si, Ca, Ti) at +0.4 dex, rendering M5 a typical representative of the Galactic halo. Over-ionization of Fe I in the atmospheres of these stars by non-LTE effects is found to be less than 0.07 dex. Five of our six stars show O-Na-Al-Mg abundance patterns consistent with pollution by proton-capture nucleosynthesis products. This paper includes data gathered with the 6.5 m Magellan Telescopes located at Las Campanas Observatory, Chile.

Chemical Composition of Juniperus communis L. Cone Essential Oil and Its Variability among Wild Populations in Kosovo.

PubMed

Hajdari, Avni; Mustafa, Behxhet; Nebija, Dashnor; Miftari, Elheme; Quave, Cassandra L; Novak, Johannes

2015-11-01

Ripe cones of Juniperus communis L. (Cupressaceae) were collected from five wild populations in Kosovo, with the aim of investigating the chemical composition and natural variation of essential oils between and within wild populations. Ripe cones were collected, air dried, crushed, and the essential oils obtained by hydrodistillation. The essential-oil constituents were identified by GC-FID and GC/MS analyses. The yield of essential oil differed depending on the population origins and ranged from 0.4 to 3.8% (v/w, based on the dry weight). In total, 42 compounds were identified in the essential oils of all populations. The principal components of the cone-essential oils were α-pinene, followed by β-myrcene, sabinene, and D-limonene. Taking into consideration the yield and chemical composition, the essential oil originating from various collection sites in Kosovo fulfilled the minimum requirements for J. communis essential oils of the European Pharmacopoeia. Hierarchical cluster analysis (HCA) and principal component analysis (PCA) were used to determine the influence of the geographical variations on the essential-oil composition. These statistical analyses suggested that the clustering of populations was not related to their geographic location, but rather appeared to be linked to local selective forces acting on the chemotype diversity. Copyright © 2015 Verlag Helvetica Chimica Acta AG, Zürich.

Development, optimization and validation of gas chromatographic fingerprinting of Brazilian commercial diesel fuel for quality control.

PubMed

dos Santos, Bruno César Diniz Brito; Flumignan, Danilo Luiz; de Oliveira, José Eduardo

2012-10-01

A three-step development, optimization and validation strategy is described for gas chromatography (GC) fingerprints of Brazilian commercial diesel fuel. A suitable GC-flame ionization detection (FID) system was selected to assay a complex matrix such as diesel. The next step was to improve acceptable chromatographic resolution with reduced analysis time, which is recommended for routine applications. Full three-level factorial designs were performed to improve flow rate, oven ramps, injection volume and split ratio in the GC system. Finally, several validation parameters were performed. The GC fingerprinting can be coupled with pattern recognition and multivariate regressions analyses to determine fuel quality and fuel physicochemical parameters. This strategy can also be applied to develop fingerprints for quality control of other fuel types.

Advances in field-portable ion trap GC/MS instrumentation

NASA Astrophysics Data System (ADS)

Diken, Eric G.; Arno, Josep; Skvorc, Ed; Manning, David; Andersson, Greger; Judge, Kevin; Fredeen, Ken; Sadowski, Charles; Oliphant, Joseph L.; Lammert, Stephen A.; Jones, Jeffrey L.; Waite, Randall W.; Grant, Chad; Lee, Edgar D.

2012-06-01

The rapid and accurate detection and identification of chemical warfare agents and toxic industrial chemicals can be critical to the protection of military and civilian personnel. The use of gas chromatography (GC) - mass spectrometry (MS) can provide both the sensitivity and selectivity required to identify unknown chemicals in complex (i.e. real-world) environments. While most widely used as a laboratory-based technique, recent advances in GC, MS, and sampling technologies have led to the development of a hand-portable GC/MS system that is more practical for field-based analyses. The unique toroidal ion trap mass spectrometer (TMS) used in this instrument has multiple benefits related to size, weight, start-up time, ruggedness, and power consumption. Sample separation is achieved in record time (~ 3 minutes) and with high resolution using a state-of-the-art high-performance low-thermal-mass GC column. In addition to providing a system overview highlighting its most important features, the presentation will focus on the chromatographic and mass spectral performance of the system. Results from exhaustive performance testing of the new instrument will be introduced to validate its unique robustness and ability to identify targeted and unknown chemicals.

Ichthyoplankton transport from the African coast to the Canary Islands

NASA Astrophysics Data System (ADS)

Brochier, Timothée; Mason, Evan; Moyano, Marta; Berraho, Amina; Colas, Francois; Sangrà, Pablo; Hernández-León, Santiago; Ettahiri, Omar; Lett, Christophe

2011-08-01

The Canary Upwelling System (CUS), a major eastern boundary upwelling system, sustains large cross-border fisheries of small pelagic fish, which poses the question of stock connectivity. Studies suggest that ichthyoplankton transport from the northwest African coast to the Canary Islands (CI) is facilitated by coastal-upwelling associated filaments. Here we analyze connections between larval supply to the CI and sardine and anchovy populations that spawn over the continental shelf. For both species, ichthyoplankton observations (1) at the shelf and (2) near the island of Gran Canaria (GC) are used. Predictions of ichthyoplankton transport to GC are obtained from the Ichthyop Lagrangian transport model, which is forced by a high-resolution hydrodynamic model (ROMS) that reproduces the regional circulation. Results show that upwelling filaments play an important role in the transport of larvae to GC. However, (1) filaments are not the only mechanism, and (2) filament presence does not necessarily imply larval transport. Anchovy and sardine larval presence at GC appears to be independent of the respective adult spawning seasonality. Combining of observed and modeled data does not succeed in reproducing the observed larval patterns at GC. Various hypotheses are proposed to explain this discrepancy in larval transport to GC.

A single high dose of dexamethasone affects the phosphorylation state of glutamate AMPA receptors in the human limbic system

PubMed Central

Lopes, M W; Leal, R B; Guarnieri, R; Schwarzbold, M L; Hoeller, A; Diaz, A P; Boos, G L; Lin, K; Linhares, M N; Nunes, J C; Quevedo, J; Bortolotto, Z A; Markowitsch, H J; Lightman, S L; Walz, R

2016-01-01

Glucocorticoids (GC) released during stress response exert feedforward effects in the whole brain, but particularly in the limbic circuits that modulates cognition, emotion and behavior. GC are the most commonly prescribed anti-inflammatory and immunosuppressant medication worldwide and pharmacological GC treatment has been paralleled by the high incidence of acute and chronic neuropsychiatric side effects, which reinforces the brain sensitivity for GC. Synapses can be bi-directionally modifiable via potentiation (long-term potentiation, LTP) or depotentiation (long-term depression, LTD) of synaptic transmission efficacy, and the phosphorylation state of Ser831 and Ser845 sites, in the GluA1 subunit of the glutamate AMPA receptors, are a critical event for these synaptic neuroplasticity events. Through a quasi-randomized controlled study, we show that a single high dexamethasone dose significantly reduces in a dose-dependent manner the levels of GluA1-Ser831 phosphorylation in the amygdala resected during surgery for temporal lobe epilepsy. This is the first report demonstrating GC effects on key markers of synaptic neuroplasticity in the human limbic system. The results contribute to understanding how GC affects the human brain under physiologic and pharmacologic conditions. PMID:27959333

Photocatalytic Properties of g-C3N4–TiO2 Heterojunctions under UV and Visible Light Conditions

PubMed Central

Fagan, Rachel; McCormack, Declan E.; Hinder, Steven J.; Pillai, Suresh C.

2016-01-01

Graphitic carbon nitride (g-C3N4) and titanium dioxide (TiO2) were chosen as a model system to investigate photocatalytic abilities of heterojunction system under UV and visible light conditions. The use of g-C3N4 has been shown to be effective in the reduction in recombination through the interaction between the two interfaces of TiO2 and g-C3N4. A simple method of preparing g-C3N4 through the pyrolysis of melamine was employed, which was then added to undoped TiO2 material to form the g-C3N4–TiO2 system. These materials were then fully characterized by X-ray diffraction (XRD), Brunauer Emmett Teller (BET), and various spectroscopic techniques including Raman, X-ray photoelectron spectroscopy (XPS), Fourier transform infrared spectroscopy (FT-IR), diffuse absorbance, and photoluminescence analysis. Photocatalysis studies were conducted using the model dye, rhodamine 6G utilizing visible and UV light irradiation. Raman spectroscopy confirmed that a composite of the materials was formed as opposed to a mixture of the two. Using XPS analysis, a shift in the nitrogen peak to that indicative of substitutional nitrogen was detected for all doped samples. This is then mirrored in the diffuse absorbance results, which show a clear decrease in band gap values for these samples, showing the effective band gap alteration achieved through this preparation process. When g-C3N4–TiO2 samples were analyzed under visible light irradiation, no significant improvement was observed compared that of pure TiO2. However, under UV light irradiation conditions, the photocatalytic ability of the doped samples exhibited an increased reactivity when compared to the undoped TiO2 (0.130 min−1), with 4% g-C3N4–TiO2 (0.187 min−1), showing a 43.9% increase in reactivity. Further doping to 8% g-C3N4–TiO2 lead to a decrease in reactivity against rhodamine 6G. BET analysis determined that the surface area of the 4% and 8% g-C3N4–TiO2 samples were very similar, with values of 29.4 and 28.5 m2/g, respectively, suggesting that the actual surface area is not a contributing factor. This could be due to an overloading of the system with covering of the active sites resulting in a lower reaction rate. XPS analysis showed that surface hydroxyl radicals and oxygen vacancies are not being formed throughout this preparation. Therefore, it can be suggested that the increased photocatalytic reaction rates are due to successful interfacial interactions with the g-C3N4-doped TiO2 systems. PMID:28773413

Metabolism of vertebrate amino sugars with N-glycolyl groups: mechanisms underlying gastrointestinal incorporation of the non-human sialic acid xeno-autoantigen N-glycolylneuraminic acid.

PubMed

Banda, Kalyan; Gregg, Christopher J; Chow, Renee; Varki, Nissi M; Varki, Ajit

2012-08-17

Although N-acetyl groups are common in nature, N-glycolyl groups are rare. Mammals express two major sialic acids, N-acetylneuraminic acid and N-glycolylneuraminic acid (Neu5Gc). Although humans cannot produce Neu5Gc, it is detected in the epithelial lining of hollow organs, endothelial lining of the vasculature, fetal tissues, and carcinomas. This unexpected expression is hypothesized to result via metabolic incorporation of Neu5Gc from mammalian foods. This accumulation has relevance for diseases associated with such nutrients, via interaction with Neu5Gc-specific antibodies. Little is known about how ingested sialic acids in general and Neu5Gc in particular are metabolized in the gastrointestinal tract. We studied the gastrointestinal and systemic fate of Neu5Gc-containing glycoproteins (Neu5Gc-glycoproteins) or free Neu5Gc in the Neu5Gc-free Cmah(-/-) mouse model. Ingested free Neu5Gc showed rapid absorption into the circulation and urinary excretion. In contrast, ingestion of Neu5Gc-glycoproteins led to Neu5Gc incorporation into the small intestinal wall, appearance in circulation at a steady-state level for several hours, and metabolic incorporation into multiple peripheral tissue glycoproteins and glycolipids, thus conclusively proving that Neu5Gc can be metabolically incorporated from food. Feeding Neu5Gc-glycoproteins but not free Neu5Gc mimics the human condition, causing tissue incorporation into human-like sites in Cmah(-/-) fetal and adult tissues, as well as developing tumors. Thus, glycoproteins containing glycosidically linked Neu5Gc are the likely dietary source for human tissue accumulation, and not the free monosaccharide. This human-like model can be used to elucidate specific mechanisms of Neu5Gc delivery from the gut to tissues, as well as general mechanisms of metabolism of ingested sialic acids.

Characteristics of gastric cancer in Asia.

PubMed

Rahman, Rubayat; Asombang, Akwi W; Ibdah, Jamal A

2014-04-28

Gastric cancer (GC) is the fourth most common cancer in the world with more than 70% of cases occur in the developing world. More than 50% of cases occur in Eastern Asia. GC is the second leading cause of cancer death in both sexes worldwide. In Asia, GC is the third most common cancer after breast and lung and is the second most common cause of cancer death after lung cancer. Although the incidence and mortality rates are slowly declining in many countries of Asia, GC still remains a significant public health problem. The incidence and mortality varies according to the geographic area in Asia. These variations are closely related to the prevalence of GC risk factors; especially Helicobacter pylori (H. pylori) and its molecular virulent characteristics. The gradual and consistent improvements in socioeconomic conditions in Asia have lowered the H. pylori seroprevalence rates leading to a reduction in the GC incidence. However, GC remains a significant public health and an economic burden in Asia. There has been no recent systemic review of GC incidence, mortality, and H. pylori molecular epidemiology in Asia. The aim of this report is to review the GC incidence, mortality, and linkage to H. pylori in Asia.

Characteristics of gastric cancer in Asia

PubMed Central

Rahman, Rubayat; Asombang, Akwi W; Ibdah, Jamal A

2014-01-01

Gastric cancer (GC) is the fourth most common cancer in the world with more than 70% of cases occur in the developing world. More than 50% of cases occur in Eastern Asia. GC is the second leading cause of cancer death in both sexes worldwide. In Asia, GC is the third most common cancer after breast and lung and is the second most common cause of cancer death after lung cancer. Although the incidence and mortality rates are slowly declining in many countries of Asia, GC still remains a significant public health problem. The incidence and mortality varies according to the geographic area in Asia. These variations are closely related to the prevalence of GC risk factors; especially Helicobacter pylori (H. pylori) and its molecular virulent characteristics. The gradual and consistent improvements in socioeconomic conditions in Asia have lowered the H. pylori seroprevalence rates leading to a reduction in the GC incidence. However, GC remains a significant public health and an economic burden in Asia. There has been no recent systemic review of GC incidence, mortality, and H. pylori molecular epidemiology in Asia. The aim of this report is to review the GC incidence, mortality, and linkage to H. pylori in Asia. PMID:24782601

The tumor-stromal ratio as a strong prognosticator for advanced gastric cancer patients: proposal of a new TSNM staging system.

PubMed

Peng, Chunwei; Liu, Jiuyang; Yang, Guifang; Li, Yan

2018-05-01

Insufficient attention is paid to the underlying tumor microenvironment (TME) evolution, that resulting in tumor heterogeneity and driving differences in cancer aggressiveness and treatment outcomes. The morphological evaluation of the proportion of the stroma at the most invasive part of primary tumor (tumor-stromal ratio, TSR) in cancer is gaining momentum as evidence strengthens for the clinical relevance. Tissue samples from the most invasive part of the primary gastric cancer (GC) of 494 patients were analyzed for their TSR, and a new TSNM (tumor-stromal node metastasis) staging system based on patho-biological behaviors was established and assessed. TSR is a new and strong independent prognostic factor for GC patients. The likelihood of tumor invasion is increased significantly for patients in the stromal-high subgroup compared to those in the stromal-low subgroup (P = 0.011). The discrimination ability of TSR was not less than the TNM staging system and was better in patients with stages I and II GC. We integrated the TSR parameter into the TNM staging system and proposed a new TSNM staging system creatively. There were three new subgroups (IC, IIC, IIID). There were four major groups and 10 subgroups in the TSNM system. The difference in overall survival (OS) was statistically significant among all TSNM system (P < 0.005 for all). Deep analyses revealed well predictive performance of the TSNM (P < 0.001). This study confirms the TSR as a TME prognostic factor for GC. TSR is a candidate TME parameter that could easily be implemented in routine pathology diagnostics, and the TSNM staging system has been established to optimize risk stratification for GC. The value of the TSNM staging system should be validated in further prospective study.

Bicarbonate Modulates Photoreceptor Guanylate Cyclase (ROS-GC) Catalytic Activity*

PubMed Central

Duda, Teresa; Wen, Xiao-Hong; Isayama, Tomoki; Sharma, Rameshwar K.; Makino, Clint L.

2015-01-01

By generating the second messenger cGMP in retinal rods and cones, ROS-GC plays a central role in visual transduction. Guanylate cyclase-activating proteins (GCAPs) link cGMP synthesis to the light-induced fall in [Ca2+]i to help set absolute sensitivity and assure prompt recovery of the response to light. The present report discloses a surprising feature of this system: ROS-GC is a sensor of bicarbonate. Recombinant ROS-GCs synthesized cGMP from GTP at faster rates in the presence of bicarbonate with an ED50 of 27 mm for ROS-GC1 and 39 mm for ROS-GC2. The effect required neither Ca2+ nor use of the GCAPs domains; however, stimulation of ROS-GC1 was more powerful in the presence of GCAP1 or GCAP2 at low [Ca2+]. When applied to retinal photoreceptors, bicarbonate enhanced the circulating current, decreased sensitivity to flashes, and accelerated flash response kinetics. Bicarbonate was effective when applied either to the outer or inner segment of red-sensitive cones. In contrast, bicarbonate exerted an effect when applied to the inner segment of rods but had little efficacy when applied to the outer segment. The findings define a new regulatory mechanism of the ROS-GC system that affects visual transduction and is likely to affect the course of retinal diseases caused by cGMP toxicity. PMID:25767116

Picogram determination of N-nitrosodimethylamine in water.

PubMed

Hu, Ruikang; Zhang, Lifeng; Yang, Zhaoguang

2008-01-01

N-nitrosodimethylamine (NDMA) persistence within surface waters is a major concern for downstream communities exploiting these waters as drinking water supplies. The objective of this study is to develop a novel and efficient analytical method for NDMA via different technologies: pulsed splitless gas chromatography-nitrogen phosphorus detector (GC-NPD), large volume injection (LVI) gas chromatography-mass spectrometry (GC/MS) via programmable temperature vaporizer (PTV) inlet or PTV-gas chromatography-triple quadruple mass spectrometry (GC-MS/MS) and continuous liquid-liquid extraction. It was found that the sensitivity required for NDMA analysis by GC-NPD can only be achieved when the NPD bead is extremely clean. LVI via PTV can greatly improve GC-MS system sensitivity for analyzing NDMA. With the help of DB-624 (25 m x 200 microm x 1.12 microm) connected with DB-5MS (30 m x 250 microm x 0.25 microm) in series, PTV-GC/MS could overcome the matrix interference for the trace analysis of NDMA. Variable instrument conditions were studied in detail, with the optimized process being validated via precision and accuracy studies. PTV- triple quadruple GC-MS/MS system could efficiently remove the interference on a single DB-5MS (30 m x 250 microm x 0.25 microm) column with good sensitivity and selectivity. The developed methods have been successfully applied to test NDMA in different types of water samples with satisfactory results. (c) IWA Publishing 2008.

A review on g-C3N4 for photocatalytic water splitting and CO2 reduction

NASA Astrophysics Data System (ADS)

Ye, Sheng; Wang, Rong; Wu, Ming-Zai; Yuan, Yu-Peng

2015-12-01

Solar fuel generation through water splitting and CO2 photoreduction is an ideal route to provide the renewable energy sources and mitigate global warming. The main challenge in photocatalysis is finding a low-cost photocatalyst that can work efficiently to split water into hydrogen and reduce CO2 to hydrocarbon fuels. Metal-free g-C3N4 photocatalyst shows great potentials for solar fuel production. In this mini review, we summarize the most current advances on novel design idea and new synthesis strategy for g-C3N4 preparation, insightful ideas on extending optical absorption of pristine g-C3N4, overall water splitting and CO2 photoreduction over g-C3N4 based systems. The research challenges and perspectives on g-C3N4 based photocatalysts were also suggested.

Mediator-free direct Z-scheme photocatalytic system: BiVO4/g-C3N4 organic-inorganic hybrid photocatalyst with highly efficient visible-light-induced photocatalytic activity.

PubMed

Tian, Na; Huang, Hongwei; He, Ying; Guo, Yuxi; Zhang, Tierui; Zhang, Yihe

2015-03-07

We disclose the fabrication of a mediator-free direct Z-scheme photocatalyst system BiVO4/g-C3N4 using a mixed-calcination method based on the more reliable interfacial interaction. The facet coupling occurred between the g-C3N4 (002) and BiVO4 (121), and it was revealed by X-ray diffraction (XRD), X-ray photoelectron spectroscopy (XPS) and transmission electron microscope (TEM). The crystal structure and optical properties of the as-prepared samples have also been characterized by Fourier-transform infrared (FTIR), scanning electron microscopy (SEM) and UV-vis diffuse reflectance spectra (DRS) in details. The photocatalytic experiments indicated that the BiVO4/g-C3N4 composite photocatalysts display a significantly enhanced photocatalytic activity pertaining to RhB degradation and photocurrent generation (PC) compared to the pristine BiVO4 and g-C3N4. This remarkably improved photocatalytic performance should be attributed to the fabrication of a direct Z-scheme system of BiVO4/g-C3N4, which can result in a more efficient separation of photoinduced charge carriers than band-band transfer, thus endowing it with the much more powerful oxidation and reduction capability, as confirmed by the photoluminescence (PL) spectra and electrochemical impedance spectra (EIS). The Z-scheme mechanism of BiVO4/g-C3N4 heterostructure was verified by a series of combined techniques, including the active species trapping experiments, NBT transformation and terephthalic acid photoluminescence probing technique (TA-PL) over BiVO4/g-C3N4 composites and the pristine samples. The present work not only furthered the understanding of mediator-free Z-scheme photocatalysis, but also shed new light on the design of heterostructural photocatalysts with high-performance.

Trace analysis in the food and beverage industry by capillary gas chromatography: system performance and maintenance.

PubMed

Hayes, M A

1988-04-01

Gas chromatography (GC) is the most widely used analytical technique in the food and beverage industry. This paper addresses the problems of sample preparation and system maintenance to ensure the most sensitive, durable, and efficient results for trace analysis by GC in this industry.

Fast Sampling Gas Chromatography (GC) System for Speciation in a Shock Tube

DTIC Science & Technology

2016-10-31

capture similar ethylene decomposition rates for temperature-dependent shock experiments. (a) Papers published in peer-reviewed journals (N/A for none...3 GC Sampling System Validation Experiments ............................................................................... 5 Ethylene ...results for cold shock experiments, and both techniques capture similar ethylene decomposition rates for temperature-dependent shock experiments. Problem

Directed natural product biosynthesis gene cluster capture and expression in the model bacterium Bacillus subtilis

NASA Astrophysics Data System (ADS)

Li, Yongxin; Li, Zhongrui; Yamanaka, Kazuya; Xu, Ying; Zhang, Weipeng; Vlamakis, Hera; Kolter, Roberto; Moore, Bradley S.; Qian, Pei-Yuan

2015-03-01

Bacilli are ubiquitous low G+C environmental Gram-positive bacteria that produce a wide assortment of specialized small molecules. Although their natural product biosynthetic potential is high, robust molecular tools to support the heterologous expression of large biosynthetic gene clusters in Bacillus hosts are rare. Herein we adapt transformation-associated recombination (TAR) in yeast to design a single genomic capture and expression vector for antibiotic production in Bacillus subtilis. After validating this direct cloning ``plug-and-play'' approach with surfactin, we genetically interrogated amicoumacin biosynthetic gene cluster from the marine isolate Bacillus subtilis 1779. Its heterologous expression allowed us to explore an unusual maturation process involving the N-acyl-asparagine pro-drug intermediates preamicoumacins, which are hydrolyzed by the asparagine-specific peptidase into the active component amicoumacin A. This work represents the first direct cloning based heterologous expression of natural products in the model organism B. subtilis and paves the way to the development of future genome mining efforts in this genus.

Directed natural product biosynthesis gene cluster capture and expression in the model bacterium Bacillus subtilis.

PubMed

Li, Yongxin; Li, Zhongrui; Yamanaka, Kazuya; Xu, Ying; Zhang, Weipeng; Vlamakis, Hera; Kolter, Roberto; Moore, Bradley S; Qian, Pei-Yuan

2015-03-24

Bacilli are ubiquitous low G+C environmental Gram-positive bacteria that produce a wide assortment of specialized small molecules. Although their natural product biosynthetic potential is high, robust molecular tools to support the heterologous expression of large biosynthetic gene clusters in Bacillus hosts are rare. Herein we adapt transformation-associated recombination (TAR) in yeast to design a single genomic capture and expression vector for antibiotic production in Bacillus subtilis. After validating this direct cloning "plug-and-play" approach with surfactin, we genetically interrogated amicoumacin biosynthetic gene cluster from the marine isolate Bacillus subtilis 1779. Its heterologous expression allowed us to explore an unusual maturation process involving the N-acyl-asparagine pro-drug intermediates preamicoumacins, which are hydrolyzed by the asparagine-specific peptidase into the active component amicoumacin A. This work represents the first direct cloning based heterologous expression of natural products in the model organism B. subtilis and paves the way to the development of future genome mining efforts in this genus.

An assessment of Indian monsoon seasonal forecasts and mechanisms underlying monsoon interannual variability in the Met Office GloSea5-GC2 system

NASA Astrophysics Data System (ADS)

Johnson, Stephanie J.; Turner, Andrew; Woolnough, Steven; Martin, Gill; MacLachlan, Craig

2017-03-01

We assess Indian summer monsoon seasonal forecasts in GloSea5-GC2, the Met Office fully coupled subseasonal to seasonal ensemble forecasting system. Using several metrics, GloSea5-GC2 shows similar skill to other state-of-the-art seasonal forecast systems. The prediction skill of the large-scale South Asian monsoon circulation is higher than that of Indian monsoon rainfall. Using multiple linear regression analysis we evaluate relationships between Indian monsoon rainfall and five possible drivers of monsoon interannual variability. Over the time period studied (1992-2011), the El Niño-Southern Oscillation (ENSO) and the Indian Ocean dipole (IOD) are the most important of these drivers in both observations and GloSea5-GC2. Our analysis indicates that ENSO and its teleconnection with Indian rainfall are well represented in GloSea5-GC2. However, the relationship between the IOD and Indian rainfall anomalies is too weak in GloSea5-GC2, which may be limiting the prediction skill of the local monsoon circulation and Indian rainfall. We show that this weak relationship likely results from a coupled mean state bias that limits the impact of anomalous wind forcing on SST variability, resulting in erroneous IOD SST anomalies. Known difficulties in representing convective precipitation over India may also play a role. Since Indian rainfall responds weakly to the IOD, it responds more consistently to ENSO than in observations. Our assessment identifies specific coupled biases that are likely limiting GloSea5-GC2 Indian summer monsoon seasonal prediction skill, providing targets for model improvement.

Measurements comparison of oxygenated volatile organic compounds at a rural site during the 1995 SOS Nashville Intensive

NASA Astrophysics Data System (ADS)

Apel, E. C.; Calvert, J. G.; Riemer, D.; Pos, W.; Zika, R.; Kleindienst, T. E.; Lonneman, W. A.; Fung, K.; Fujita, E.; Shepson, P. B.; Starn, T. K.; Roberts, P. T.

1998-09-01

Simultaneous measurements of oxygenated volatile organic compounds (OVOCs) by four independent research groups at the Youth Incorporated (YI) site during the 1995 Southern Oxidants Study Nashville Intensive, between July 4 and 30, 1995, provided a unique opportunity to compare results from different techniques. 2,4-Dinitrophenylhydrazine (DNPH) coated C18 (C18AtmAA) and Si-Gel (Si-GelMTE) cartridges were compared with each other and with two sorbent-based preconcentration gas chromatographic (GC) techniques coupled with mass spectrometric (MS) detection (GC/MSUM and GC/MSPU) or flame ionization detection GC/FIDUM· The experiment consisted of both a laboratory (part A) and an ambient air comparison (part B). In part A of the study, standard mixtures of OVOCs were diluted in a flowing gas stream of humidified, purified air, both with and without addition of O3, and distributed to participant's instrumentation. Concentrations were compared with the expected values based on known cylinder concentrations and dilution factors. In part B of the study, the instruments sampled ambient air from a common glass manifold. Species intercompared were formaldehyde, acetaldehyde, acetone, and propanal. The C18AtmAA data were typically higher than the Si-GelMTE data for the four intercompared compounds, and possible explanations are given. Agreement between the cartridge systems and the GC/MS, GC/FID systems for comeasured compounds was poorer than expected but improved towards the end of the experiment. The GC/MS systems tracked each other well for acetone, but there were differences in the absolute concentration values. These results show that improvements in the accuracy and comparability of techniques should be of high priority.

Development and Applications of Portable Gas Chromatography-Mass Spectrometry for Emergency Responders, the Military, and Law-Enforcement Organizations.

PubMed

Leary, Pauline E; Dobson, Gareth S; Reffner, John A

2016-05-01

Portable gas chromatography-mass spectrometry (GC-MS) systems are being deployed for field use, and are designed with this goal in mind. Performance characteristics of instruments that are successful in the field are different from those of equivalent technologies that are successful in a laboratory setting. These field-portable systems are extending the capabilities of the field user, providing investigative leads and confirmatory identifications in real time. Many different types of users benefit from the availability of this technology including emergency responders, the military, and law-enforcement organizations. This manuscript describes performance characteristics that are important for field-portable instruments, especially field-portable GC-MS systems, and demonstrates the value of this equipment to the disciplines of explosives investigations, fire investigations, and counterfeit-drug detection. This paper describes the current state of portable GC-MS technology, including a review of the development of portable GC-MS, as well as a demonstration of the value of this capability using different examples. © The Author(s) 2016.

Kinematics of Globular Cluster: new Perspectives of Energy Equipartition from N-body Simulations

NASA Astrophysics Data System (ADS)

Kim, Hyunwoo; Pasquato, Mario; Yoon, Suk-jin

2018-01-01

Globular clusters (GCs) evolve dynamically through gravitational two-body interactions between stars. We investigated the evolution towards energy equipartition in GCs using direct n-body simulations in NBODY6. If a GC reaches full energy equipartition, the velocity dispersion as a function of stars’ mass becomes a power law with exponent -1/2. However, our n-body simulations never reach full equipartition, which is similar to Trenti & van de Marel (2013) results. Instead we found that in simulations with a shallow mass spectrum the best fit exponent becomes positive slightly before core collapse time. This inversion is a new result, which can be used as a kinematic predictor of core collapse. We are currently exploring applications of this inversion indicator to the detection of intermediate mass black holes.

Portable gas chromatograph-mass spectrometer

DOEpatents

Andresen, B.D.; Eckels, J.D.; Kimmons, J.F.; Myers, D.W.

1996-06-11

A gas chromatograph-mass spectrometer (GC-MS) is described for use as a field portable organic chemical analysis instrument. The GC-MS is designed to be contained in a standard size suitcase, weighs less than 70 pounds, and requires less than 600 watts of electrical power at peak power (all systems on). The GC-MS includes: a conduction heated, forced air cooled small bore capillary gas chromatograph, a small injector assembly, a self-contained ion/sorption pump vacuum system, a hydrogen supply, a dual computer system used to control the hardware and acquire spectrum data, and operational software used to control the pumping system and the gas chromatograph. This instrument incorporates a modified commercial quadrupole mass spectrometer to achieve the instrument sensitivity and mass resolution characteristic of laboratory bench top units. 4 figs.

xQTL workbench: a scalable web environment for multi-level QTL analysis.

PubMed

Arends, Danny; van der Velde, K Joeri; Prins, Pjotr; Broman, Karl W; Möller, Steffen; Jansen, Ritsert C; Swertz, Morris A

2012-04-01

xQTL workbench is a scalable web platform for the mapping of quantitative trait loci (QTLs) at multiple levels: for example gene expression (eQTL), protein abundance (pQTL), metabolite abundance (mQTL) and phenotype (phQTL) data. Popular QTL mapping methods for model organism and human populations are accessible via the web user interface. Large calculations scale easily on to multi-core computers, clusters and Cloud. All data involved can be uploaded and queried online: markers, genotypes, microarrays, NGS, LC-MS, GC-MS, NMR, etc. When new data types come available, xQTL workbench is quickly customized using the Molgenis software generator. xQTL workbench runs on all common platforms, including Linux, Mac OS X and Windows. An online demo system, installation guide, tutorials, software and source code are available under the LGPL3 license from http://www.xqtl.org. m.a.swertz@rug.nl.

xQTL workbench: a scalable web environment for multi-level QTL analysis

PubMed Central

Arends, Danny; van der Velde, K. Joeri; Prins, Pjotr; Broman, Karl W.; Möller, Steffen; Jansen, Ritsert C.; Swertz, Morris A.

2012-01-01

Summary: xQTL workbench is a scalable web platform for the mapping of quantitative trait loci (QTLs) at multiple levels: for example gene expression (eQTL), protein abundance (pQTL), metabolite abundance (mQTL) and phenotype (phQTL) data. Popular QTL mapping methods for model organism and human populations are accessible via the web user interface. Large calculations scale easily on to multi-core computers, clusters and Cloud. All data involved can be uploaded and queried online: markers, genotypes, microarrays, NGS, LC-MS, GC-MS, NMR, etc. When new data types come available, xQTL workbench is quickly customized using the Molgenis software generator. Availability: xQTL workbench runs on all common platforms, including Linux, Mac OS X and Windows. An online demo system, installation guide, tutorials, software and source code are available under the LGPL3 license from http://www.xqtl.org. Contact: m.a.swertz@rug.nl PMID:22308096

Granger causality network reconstruction of conductance-based integrate-and-fire neuronal systems.

PubMed

Zhou, Douglas; Xiao, Yanyang; Zhang, Yaoyu; Xu, Zhiqin; Cai, David

2014-01-01

Reconstruction of anatomical connectivity from measured dynamical activities of coupled neurons is one of the fundamental issues in the understanding of structure-function relationship of neuronal circuitry. Many approaches have been developed to address this issue based on either electrical or metabolic data observed in experiment. The Granger causality (GC) analysis remains one of the major approaches to explore the dynamical causal connectivity among individual neurons or neuronal populations. However, it is yet to be clarified how such causal connectivity, i.e., the GC connectivity, can be mapped to the underlying anatomical connectivity in neuronal networks. We perform the GC analysis on the conductance-based integrate-and-fire (I&F) neuronal networks to obtain their causal connectivity. Through numerical experiments, we find that the underlying synaptic connectivity amongst individual neurons or subnetworks, can be successfully reconstructed by the GC connectivity constructed from voltage time series. Furthermore, this reconstruction is insensitive to dynamical regimes and can be achieved without perturbing systems and prior knowledge of neuronal model parameters. Surprisingly, the synaptic connectivity can even be reconstructed by merely knowing the raster of systems, i.e., spike timing of neurons. Using spike-triggered correlation techniques, we establish a direct mapping between the causal connectivity and the synaptic connectivity for the conductance-based I&F neuronal networks, and show the GC is quadratically related to the coupling strength. The theoretical approach we develop here may provide a framework for examining the validity of the GC analysis in other settings.

Granger Causality Network Reconstruction of Conductance-Based Integrate-and-Fire Neuronal Systems

PubMed Central

Zhou, Douglas; Xiao, Yanyang; Zhang, Yaoyu; Xu, Zhiqin; Cai, David

2014-01-01

Reconstruction of anatomical connectivity from measured dynamical activities of coupled neurons is one of the fundamental issues in the understanding of structure-function relationship of neuronal circuitry. Many approaches have been developed to address this issue based on either electrical or metabolic data observed in experiment. The Granger causality (GC) analysis remains one of the major approaches to explore the dynamical causal connectivity among individual neurons or neuronal populations. However, it is yet to be clarified how such causal connectivity, i.e., the GC connectivity, can be mapped to the underlying anatomical connectivity in neuronal networks. We perform the GC analysis on the conductance-based integrate-and-fire (IF) neuronal networks to obtain their causal connectivity. Through numerical experiments, we find that the underlying synaptic connectivity amongst individual neurons or subnetworks, can be successfully reconstructed by the GC connectivity constructed from voltage time series. Furthermore, this reconstruction is insensitive to dynamical regimes and can be achieved without perturbing systems and prior knowledge of neuronal model parameters. Surprisingly, the synaptic connectivity can even be reconstructed by merely knowing the raster of systems, i.e., spike timing of neurons. Using spike-triggered correlation techniques, we establish a direct mapping between the causal connectivity and the synaptic connectivity for the conductance-based IF neuronal networks, and show the GC is quadratically related to the coupling strength. The theoretical approach we develop here may provide a framework for examining the validity of the GC analysis in other settings. PMID:24586285

Characterization of the volatile components in green tea by IRAE-HS-SPME/GC-MS combined with multivariate analysis.

PubMed

Yang, Yan-Qin; Yin, Hong-Xu; Yuan, Hai-Bo; Jiang, Yong-Wen; Dong, Chun-Wang; Deng, Yu-Liang

2018-01-01

In the present work, a novel infrared-assisted extraction coupled to headspace solid-phase microextraction (IRAE-HS-SPME) followed by gas chromatography-mass spectrometry (GC-MS) was developed for rapid determination of the volatile components in green tea. The extraction parameters such as fiber type, sample amount, infrared power, extraction time, and infrared lamp distance were optimized by orthogonal experimental design. Under optimum conditions, a total of 82 volatile compounds in 21 green tea samples from different geographical origins were identified. Compared with classical water-bath heating, the proposed technique has remarkable advantages of considerably reducing the analytical time and high efficiency. In addition, an effective classification of green teas based on their volatile profiles was achieved by partial least square-discriminant analysis (PLS-DA) and hierarchical clustering analysis (HCA). Furthermore, the application of a dual criterion based on the variable importance in the projection (VIP) values of the PLS-DA models and on the category from one-way univariate analysis (ANOVA) allowed the identification of 12 potential volatile markers, which were considered to make the most important contribution to the discrimination of the samples. The results suggest that IRAE-HS-SPME/GC-MS technique combined with multivariate analysis offers a valuable tool to assess geographical traceability of different tea varieties.

Characterization of the volatile components in green tea by IRAE-HS-SPME/GC-MS combined with multivariate analysis

PubMed Central

Yin, Hong-Xu; Yuan, Hai-Bo; Jiang, Yong-Wen; Dong, Chun-Wang; Deng, Yu-Liang

2018-01-01

In the present work, a novel infrared-assisted extraction coupled to headspace solid-phase microextraction (IRAE-HS-SPME) followed by gas chromatography-mass spectrometry (GC-MS) was developed for rapid determination of the volatile components in green tea. The extraction parameters such as fiber type, sample amount, infrared power, extraction time, and infrared lamp distance were optimized by orthogonal experimental design. Under optimum conditions, a total of 82 volatile compounds in 21 green tea samples from different geographical origins were identified. Compared with classical water-bath heating, the proposed technique has remarkable advantages of considerably reducing the analytical time and high efficiency. In addition, an effective classification of green teas based on their volatile profiles was achieved by partial least square-discriminant analysis (PLS-DA) and hierarchical clustering analysis (HCA). Furthermore, the application of a dual criterion based on the variable importance in the projection (VIP) values of the PLS-DA models and on the category from one-way univariate analysis (ANOVA) allowed the identification of 12 potential volatile markers, which were considered to make the most important contribution to the discrimination of the samples. The results suggest that IRAE-HS-SPME/GC-MS technique combined with multivariate analysis offers a valuable tool to assess geographical traceability of different tea varieties. PMID:29494626

The Next Generation Virgo Cluster Survey (NGVS). XXV. Fiducial Panchromatic Colors of Virgo Core Globular Clusters and Their Comparison to Model Predictions

NASA Astrophysics Data System (ADS)

Powalka, Mathieu; Lançon, Ariane; Puzia, Thomas H.; Peng, Eric W.; Liu, Chengze; Muñoz, Roberto P.; Blakeslee, John P.; Côté, Patrick; Ferrarese, Laura; Roediger, Joel; Sánchez-Janssen, Rúben; Zhang, Hongxin; Durrell, Patrick R.; Cuillandre, Jean-Charles; Duc, Pierre-Alain; Guhathakurta, Puragra; Gwyn, S. D. J.; Hudelot, Patrick; Mei, Simona; Toloba, Elisa

2016-11-01

The central region of the Virgo Cluster of galaxies contains thousands of globular clusters (GCs), an order of magnitude more than the number of clusters found in the Local Group. Relics of early star formation epochs in the universe, these GCs also provide ideal targets to test our understanding of the spectral energy distributions (SEDs) of old stellar populations. Based on photometric data from the Next Generation Virgo Cluster Survey (NGVS) and its near-infrared counterpart NGVS-IR, we select a robust sample of ≈ 2000 GCs with excellent photometry and tha span the full range of colors present in the Virgo core. The selection exploits the well-defined locus of GCs in the uiK diagram and the fact that the GCs are marginally resolved in the images. We show that the GCs define a narrow sequence in five-dimensional color space, with limited but real dispersion around the mean sequence. The comparison of these SEDs with the predictions of 11 widely used population synthesis models highlights differences between the models and also shows that no single model adequately matches the data in all colors. We discuss possible causes for some of these discrepancies. Forthcoming papers of this series will examine how best to estimate photometric metallicities in this context, and compare the Virgo GC colors with those in other environments.

Millisecond Pulsars and the Galactic Center Excess

NASA Astrophysics Data System (ADS)

Gonthier, Peter L.; Koh, Yew-Meng; Kust Harding, Alice; Ferrara, Elizabeth C.

2017-08-01

Various groups including the Fermi team have confirmed the spectrum of the gamma- ray excess in the Galactic Center (GCE). While some authors interpret the GCE as evidence for the annihilation of dark matter (DM), others have pointed out that the GCE spectrum is nearly identical to the average spectrum of Fermi millisecond pul- sars (MSP). Assuming the Galactic Center (GC) is populated by a yet unobserved source of MSPs that has similar properties to that of MSPs in the Galactic Disk (GD), we present results of a population synthesis of MSPs from the GC. We establish parameters of various models implemented in the simulation code by matching characteristics of 54 detected Fermi MSPs in the first point source catalog and 92 detected radio MSPs in a select group of thirteen radio surveys and targeting a birth rate of 45 MSPs per mega-year. As a check of our simulation, we find excellent agreement with the estimated numbers of MSPs in eight globular clusters. In order to reproduce the gamma-ray spectrum of the GCE, we need to populate the GC with 10,000 MSPs having a Navarro-Frenk-White distribution suggested by the halo density of DM. It may be possible for Fermi to detect some of these MSPs in the near future; the simulation also predicts that many GC MSPs have radio fluxes S1400above 10 �μJy observable by future pointed radio observations. We express our gratitude for the generous support of the National Science Foundation (RUI: AST-1009731), Fermi Guest Investigator Program and the NASA Astrophysics Theory and Fundamental Program (NNX09AQ71G).

Comparison of large-insert, small-insert and pyrosequencing libraries for metagenomic analysis.

PubMed

Danhorn, Thomas; Young, Curtis R; DeLong, Edward F

2012-11-01

The development of DNA sequencing methods for characterizing microbial communities has evolved rapidly over the past decades. To evaluate more traditional, as well as newer methodologies for DNA library preparation and sequencing, we compared fosmid, short-insert shotgun and 454 pyrosequencing libraries prepared from the same metagenomic DNA samples. GC content was elevated in all fosmid libraries, compared with shotgun and 454 libraries. Taxonomic composition of the different libraries suggested that this was caused by a relative underrepresentation of dominant taxonomic groups with low GC content, notably Prochlorales and the SAR11 cluster, in fosmid libraries. While these abundant taxa had a large impact on library representation, we also observed a positive correlation between taxon GC content and fosmid library representation in other low-GC taxa, suggesting a general trend. Analysis of gene category representation in different libraries indicated that the functional composition of a library was largely a reflection of its taxonomic composition, and no additional systematic biases against particular functional categories were detected at the level of sequencing depth in our samples. Another important but less predictable factor influencing the apparent taxonomic and functional library composition was the read length afforded by the different sequencing technologies. Our comparisons and analyses provide a detailed perspective on the influence of library type on the recovery of microbial taxa in metagenomic libraries and underscore the different uses and utilities of more traditional, as well as contemporary 'next-generation' DNA library construction and sequencing technologies for exploring the genomics of the natural microbial world.

Complete Genome Sequence and Comparative Analysis of the Fish Pathogen Lactococcus garvieae

PubMed Central

Oshima, Kenshiro; Yoshizaki, Mariko; Kawanishi, Michiko; Nakaya, Kohei; Suzuki, Takehito; Miyauchi, Eiji; Ishii, Yasuo; Tanabe, Soichi; Murakami, Masaru; Hattori, Masahira

2011-01-01

Lactococcus garvieae causes fatal haemorrhagic septicaemia in fish such as yellowtail. The comparative analysis of genomes of a virulent strain Lg2 and a non-virulent strain ATCC 49156 of L. garvieae revealed that the two strains shared a high degree of sequence identity, but Lg2 had a 16.5-kb capsule gene cluster that is absent in ATCC 49156. The capsule gene cluster was composed of 15 genes, of which eight genes are highly conserved with those in exopolysaccharide biosynthesis gene cluster often found in Lactococcus lactis strains. Sequence analysis of the capsule gene cluster in the less virulent strain L. garvieae Lg2-S, Lg2-derived strain, showed that two conserved genes were disrupted by a single base pair deletion, respectively. These results strongly suggest that the capsule is crucial for virulence of Lg2. The capsule gene cluster of Lg2 may be a genomic island from several features such as the presence of insertion sequences flanked on both ends, different GC content from the chromosomal average, integration into the locus syntenic to other lactococcal genome sequences, and distribution in human gut microbiomes. The analysis also predicted other potential virulence factors such as haemolysin. The present study provides new insights into understanding of the virulence mechanisms of L. garvieae in fish. PMID:21829716

Gastric cancer-derived MSC-secreted PDGF-DD promotes gastric cancer progression.

PubMed

Huang, Feng; Wang, Mei; Yang, Tingting; Cai, Jie; Zhang, Qiang; Sun, Zixuan; Wu, Xiaodan; Zhang, Xu; Zhu, Wei; Qian, Hui; Xu, Wenrong

2014-11-01

This study was designed to investigate the role of PDGF-DD secreted by gastric cancer-derived mesenchymal stem cells (GC-MSCs) in human gastric cancer progression. Gastric cancer cells were indirectly co-cultured with GC-MSCs in a transwell system. The growth and migration of gastric cancer cells were evaluated by cell colony formation assay and transwell migration assay, respectively. The production of PDGF-DD in GC-MSCs was determined by using Luminex and ELISA. Neutralization of PDGFR-β by su16f and siRNA interference of PDGF-DD in GC-MSCs was used to demonstrate the role of PDGF-DD produced by GC-MSCs in gastric cancer progression. GC-MSC conditioned medium promoted gastric cancer cell proliferation and migration in vitro and in vivo. Co-culture with GC-MSCs increased the phosphorylation of PDGFR-β in SGC-7901 cells. Neutralization of PDGFR-β by su16f blocked the promoting role of GC-MSC conditioned medium in gastric cancer cell proliferation and migration. Recombinant PDGF-DD duplicated the effects of GC-MSC conditioned medium on gastric cancer cells. Knockdown of PDGF-DD in GC-MSCs abolished its effects on gastric cancer cells in vitro and in vivo. PDGF-DD secreted by GC-MSCs is capable of promoting gastric cancer cell progression in vitro and in vivo. Targeting the PDGF-DD/PDGFR-β interaction between MSCs and gastric cancer cells may represent a novel strategy for gastric cancer therapy.

Immunotherapy of metastatic colorectal cancer with vitamin D-binding protein-derived macrophage-activating factor, GcMAF.

PubMed

Yamamoto, Nobuto; Suyama, Hirofumi; Nakazato, Hiroaki; Yamamoto, Nobuyuki; Koga, Yoshihiko

2008-07-01

Serum vitamin D binding protein (Gc protein) is the precursor for the principal macrophage-activating factor (MAF). The MAF precursor activity of serum Gc protein of colorectal cancer patients was lost or reduced because Gc protein is deglycosylated by serum alpha-N-acetylgalactosaminidase (Nagalase) secreted from cancerous cells. Deglycosylated Gc protein cannot be converted to MAF, leading to immunosuppression. Stepwise treatment of purified Gc protein with immobilized beta-galactosidase and sialidase generated the most potent macrophage-activating factor (GcMAF) ever discovered, but it produces no side effect in humans. Macrophages treated with GcMAF (100 microg/ml) develop an enormous variation of receptors and are highly tumoricidal to a variety of cancers indiscriminately. Administration of 100 nanogram (ng)/ human maximally activates systemic macrophages that can kill cancerous cells. Since the half-life of the activated macrophages is approximately 6 days, 100 ng GcMAF was administered weekly to eight nonanemic colorectal cancer patients who had previously received tumor-resection but still carried significant amounts of metastatic tumor cells. As GcMAF therapy progressed, the MAF precursor activities of all patients increased and conversely their serum Nagalase activities decreased. Since serum Nagalase is proportional to tumor burden, serum Nagalase activity was used as a prognostic index for time course analysis of GcMAF therapy. After 32-50 weekly administrations of 100 ng GcMAF, all colorectal cancer patients exhibited healthy control levels of the serum Nagalase activity, indicating eradication of metastatic tumor cells. During 7 years after the completion of GcMAF therapy, their serum Nagalase activity did not increase, indicating no recurrence of cancer, which was also supported by the annual CT scans of these patients.

[Research progress in molecular classification of gastric cancer].

PubMed

Zhou, Menglong; Li, Guichao; Zhang, Zhen

2016-09-25

Gastric cancer(GC) is a highly heterogeneous malignancy. The present widely used histopathological classifications have gradually failed to meet the needs of individualized diagnosis and treatment. Development of technologies such as microarray and next-generation sequencing (NGS) has allowed GC to be studied at the molecular level. Mechanisms about tumorigenesis and progression of GC can be elucidated in the aspects of gene mutations, chromosomal alterations, transcriptional and epigenetic changes, on the basis of which GC can be divided into several subtypes. The classifications of Tan's, Lei's, TCGA and ACRG are relatively comprehensive. Especially the TCGA and ACRG classifications have large sample size and abundant molecular profiling data, thus, the genomic characteristics of GC can be depicted more accurately. However, significant differences between both classifications still exist so that they cannot be substituted for each other. So far there is no widely accepted molecular classification of GC. Compared with TCGA classification, ACRG system may have more clinical significance in Chinese GC patients since the samples are mostly from Asian population and show better association with prognosis. The molecular classification of GC may provide the theoretical and experimental basis for early diagnosis, therapeutic efficacy prediction and treatment stratification while their clinical application is still limited. Future work should involve the application of molecular classifications in the clinical settings for improving the medical management of GC.

Bicarbonate Modulates Photoreceptor Guanylate Cyclase (ROS-GC) Catalytic Activity.

PubMed

Duda, Teresa; Wen, Xiao-Hong; Isayama, Tomoki; Sharma, Rameshwar K; Makino, Clint L

2015-04-24

By generating the second messenger cGMP in retinal rods and cones, ROS-GC plays a central role in visual transduction. Guanylate cyclase-activating proteins (GCAPs) link cGMP synthesis to the light-induced fall in [Ca(2+)]i to help set absolute sensitivity and assure prompt recovery of the response to light. The present report discloses a surprising feature of this system: ROS-GC is a sensor of bicarbonate. Recombinant ROS-GCs synthesized cGMP from GTP at faster rates in the presence of bicarbonate with an ED50 of 27 mM for ROS-GC1 and 39 mM for ROS-GC2. The effect required neither Ca(2+) nor use of the GCAPs domains; however, stimulation of ROS-GC1 was more powerful in the presence of GCAP1 or GCAP2 at low [Ca(2+)]. When applied to retinal photoreceptors, bicarbonate enhanced the circulating current, decreased sensitivity to flashes, and accelerated flash response kinetics. Bicarbonate was effective when applied either to the outer or inner segment of red-sensitive cones. In contrast, bicarbonate exerted an effect when applied to the inner segment of rods but had little efficacy when applied to the outer segment. The findings define a new regulatory mechanism of the ROS-GC system that affects visual transduction and is likely to affect the course of retinal diseases caused by cGMP toxicity. © 2015 by The American Society for Biochemistry and Molecular Biology, Inc.

Prototype of an Interface for Hyphenating Distillation with Gas Chromatography and Mass Spectrometry

PubMed Central

Tang, Ya-Ru; Yang, Hui-Hsien; Urban, Pawel L.

2017-01-01

Chemical analysis of complex matrices—containing hundreds of compounds—is challenging. Two-dimensional separation techniques provide an efficient way to reduce complexity of mixtures analyzed by mass spectrometry (MS). For example, gasoline is a mixture of numerous compounds, which can be fractionated by distillation techniques. However, coupling conventional distillation with other separations as well as MS is not straightforward. We have established an automatic system for online coupling of simple microscale distillation with gas chromatography (GC) and electron ionization MS. The developed system incorporates an interface between the distillation condenser and the injector of a fused silica capillary GC column. Development of this multidimensional separation (distillation-GC-MS) was preceded by a series of preliminary off-line experiments. In the developed technique, the components with different boiling points are fractionated and instantly analyzed by GC-MS. The obtained data sets illustrate dynamics of the distillation process. An important advantage of the distillation-GC-MS technique is that raw samples can directly be analyzed without removal of the non-volatile matrix residues that could contaminate the GC injection port and the column. Distilling the samples immediately before the injection to the GC column may reduce possible matrix effects—especially in the early phase of separation, when molecules with different volatilities co-migrate. It can also reduce losses of highly volatile components (during fraction collection and transfer). The two separation steps are partly orthogonal, what can slightly increase selectivity of the entire analysis. PMID:28337400

Genome Sequence of Cronobacter sakazakii BAA-894 and Comparative Genomic Hybridization Analysis with Other Cronobacter Species

PubMed Central

Kucerova, Eva; Clifton, Sandra W.; Xia, Xiao-Qin; Long, Fred; Porwollik, Steffen; Fulton, Lucinda; Fronick, Catrina; Minx, Patrick; Kyung, Kim; Warren, Wesley; Fulton, Robert; Feng, Dongyan; Wollam, Aye; Shah, Neha; Bhonagiri, Veena; Nash, William E.; Hallsworth-Pepin, Kymberlie; Wilson, Richard K.

2010-01-01

Background The genus Cronobacter (formerly called Enterobacter sakazakii) is composed of five species; C. sakazakii, C. malonaticus, C. turicensis, C. muytjensii, and C. dublinensis. The genus includes opportunistic human pathogens, and the first three species have been associated with neonatal infections. The most severe diseases are caused in neonates and include fatal necrotizing enterocolitis and meningitis. The genetic basis of the diversity within the genus is unknown, and few virulence traits have been identified. Methodology/Principal Findings We report here the first sequence of a member of this genus, C. sakazakii strain BAA-894. The genome of Cronobacter sakazakii strain BAA-894 comprises a 4.4 Mb chromosome (57% GC content) and two plasmids; 31 kb (51% GC) and 131 kb (56% GC). The genome was used to construct a 387,000 probe oligonucleotide tiling DNA microarray covering the whole genome. Comparative genomic hybridization (CGH) was undertaken on five other C. sakazakii strains, and representatives of the four other Cronobacter species. Among 4,382 annotated genes inspected in this study, about 55% of genes were common to all C. sakazakii strains and 43% were common to all Cronobacter strains, with 10–17% absence of genes. Conclusions/Significance CGH highlighted 15 clusters of genes in C. sakazakii BAA-894 that were divergent or absent in more than half of the tested strains; six of these are of probable prophage origin. Putative virulence factors were identified in these prophage and in other variable regions. A number of genes unique to Cronobacter species associated with neonatal infections (C. sakazakii, C. malonaticus and C. turicensis) were identified. These included a copper and silver resistance system known to be linked to invasion of the blood-brain barrier by neonatal meningitic strains of Escherichia coli. In addition, genes encoding for multidrug efflux pumps and adhesins were identified that were unique to C. sakazakii strains from outbreaks in neonatal intensive care units. PMID:20221447

Complete Genomic Structure of the Bloom-forming Toxic Cyanobacterium Microcystis aeruginosa NIES-843

PubMed Central

Kaneko, Takakazu; Nakajima, Nobuyoshi; Okamoto, Shinobu; Suzuki, Iwane; Tanabe, Yuuhiko; Tamaoki, Masanori; Nakamura, Yasukazu; Kasai, Fumie; Watanabe, Akiko; Kawashima, Kumiko; Kishida, Yoshie; Ono, Akiko; Shimizu, Yoshimi; Takahashi, Chika; Minami, Chiharu; Fujishiro, Tsunakazu; Kohara, Mitsuyo; Katoh, Midori; Nakazaki, Naomi; Nakayama, Shinobu; Yamada, Manabu; Tabata, Satoshi; Watanabe, Makoto M.

2007-01-01

Abstract The nucleotide sequence of the complete genome of a cyanobacterium, Microcystis aeruginosa NIES-843, was determined. The genome of M. aeruginosa is a single, circular chromosome of 5 842 795 base pairs (bp) in length, with an average GC content of 42.3%. The chromosome comprises 6312 putative protein-encoding genes, two sets of rRNA genes, 42 tRNA genes representing 41 tRNA species, and genes for tmRNA, the B subunit of RNase P, SRP RNA, and 6Sa RNA. Forty-five percent of the putative protein-encoding sequences showed sequence similarity to genes of known function, 32% were similar to hypothetical genes, and the remaining 23% had no apparent similarity to reported genes. A total of 688 kb of the genome, equivalent to 11.8% of the entire genome, were composed of both insertion sequences and miniature inverted-repeat transposable elements. This is indicative of a plasticity of the M. aeruginosa genome, through a mechanism that involves homologous recombination mediated by repetitive DNA elements. In addition to known gene clusters related to the synthesis of microcystin and cyanopeptolin, novel gene clusters that may be involved in the synthesis and modification of toxic small polypeptides were identified. Compared with other cyanobacteria, a relatively small number of genes for two component systems and a large number of genes for restriction-modification systems were notable characteristics of the M. aeruginosa genome. PMID:18192279

The Profile of the Galactic Halo from Pan-STARRS1 3π RR Lyrae

NASA Astrophysics Data System (ADS)

Hernitschek, Nina; Cohen, Judith G.; Rix, Hans-Walter; Sesar, Branimir; Martin, Nicolas F.; Magnier, Eugene; Wainscoat, Richard; Kaiser, Nick; Tonry, John L.; Kudritzki, Rolf-Peter; Hodapp, Klaus; Chambers, Ken; Flewelling, Heather; Burgett, William

2018-05-01

We characterize the spatial density of the Pan-STARRS1 (PS1) sample of Rrab stars to study the properties of the old Galactic stellar halo. This sample, containing 44,403 sources, spans galactocentric radii of 0.55 kpc ≤ R gc ≤ 141 kpc with a distance precision of 3% and thus is able to trace the halo out to larger distances than most previous studies. After excising stars that are attributed to dense regions such as stellar streams, the Galactic disk and bulge, and halo globular clusters, the sample contains ∼11,000 sources within 20 kpc ≤ R gc ≤ 131 kpc. We then apply forward modeling using Galactic halo profile models with a sample selection function. Specifically, we use ellipsoidal stellar density models ρ(l, b, R gc) with a constant and a radius-dependent halo flattening q(R gc). Assuming constant flattening q, the distribution of the sources is reasonably well fit by a single power law with n={4.40}-0.04+0.05 and q={0.918}-0.014+0.016 and comparably well fit by an Einasto profile with n={9.53}-0.28+0.27, an effective radius r eff = 1.07 ± 0.10 kpc, and a halo flattening of q = 0.923 ± 0.007. If we allow for a radius-dependent flattening q(R gc), we find evidence for a distinct flattening of q ∼ 0.8 of the inner halo at ∼25 kpc. Additionally, we find that the south Galactic hemisphere is more flattened than the north Galactic hemisphere. The results of our work are largely consistent with many earlier results (e.g., Watkins et al.; Iorio et al.). We find that the stellar halo, as traced in RR Lyrae stars, exhibits a substantial number of further significant over- and underdensities, even after masking all known overdensities.

Risk of Serious Infection for Patients with Systemic Lupus Erythematosus Starting Glucocorticoids with or without Antimalarials.

PubMed

Herrinton, Lisa J; Liu, Liyan; Goldfien, Robert; Michaels, M Alex; Tran, Trung N

2016-08-01

To compare serious infection risk for systemic lupus erythematosus (SLE) patients starting glucocorticoids (GC), antimalarials (AM), or their combination. We conducted a new-user, historical cohort study, Kaiser Permanente Northern California, 1997-2013. Cox proportional hazards analysis was used to calculate adjusted HR and 95% CI. The study included 3030 patients with SLE followed an average of 4 years. Compared with patients starting AM without GC (9 infections/1461 patient-yrs), the HR for the risk of infection was 3.9 (95% CI 1.7-9.2) for those starting GC ≤ 15 mg/day without AM (14 infections/252 patient-yrs), while it was 0.0 (0 infections/128 patient-yrs) for those starting the combination. We split the 14 patients with a serious infection and with GC < 15 mg/day into 2 groups: < 7.5 and ≥ 7.5-15 mg/day. The HR for < 7.5 mg/day was 4.6 (95% CI 1.8-11.4) and for ≥ 7.5-15 mg/day, 3.1 (95% CI 1.0-9.7). For patients starting GC > 15 mg/day (reflecting more severe SLE), the risk of infection was nearly the same for the combination of GC and AM (9 infections/135 patient-yrs) and GC alone (41 infections/460 patient-yrs), but the combination users had evidence of more severe disease. Patients with SLE had a 6- to 7-fold greater risk of serious infection than the general population. Our findings suggest that the benefits of AM treatment for SLE may extend to preventing serious infections. Although the study included > 3000 patients, the statistical power to examine GC dosages < 15 mg/day was poor.

Breath detection by transcutaneous electromyography of the diaphragm and the Graseby capsule in preterm infants.

PubMed

de Waal, Cornelia G; Kraaijenga, Juliette V; Hutten, Gerard J; de Jongh, Frans H; van Kaam, Anton H

2017-12-01

To compare triggering, breath detection and delay time of the Graseby capsule (GC) and transcutaneous electromyography of the diaphragm (dEMG) in spontaneous breathing preterm infants. In this observational study, a 30 minutes respiration measurement was conducted by respiratory inductance plethysmography (RIP), the GC, and dEMG in stable preterm infants. Triggering was investigated with an in vitro set-up using the Infant Flow ® SiPAP TM system. The possibility to optimize breath detection was tested by developing new algorithms with the abdominal RIP band (RIP AB ) as gold standard. In a subset of breaths, the delay time was calculated between the inspiratory onset in the RIP AB signal and in the GC and dEMG signal. Fifteen preterm infants with a mean gestational age of 28 ± 2 weeks and a mean birth weight of 1086 ± 317 g were included. In total, 14 773 breaths were analyzed. Based on the GC and dEMG signal, the Infant Flow ® SiPAP™ system, respectively, triggered 67.8% and 62.6% of the breaths. Breath detection was improved to 99.9% for the GC and 113.4% for dEMG in new algorithms. In 1492 stable breaths, the median delay time of inspiratory onset detection was +154 ms (IQR +118 to +164) in the GC and -50 ms (IQR -90 to -22) in the dEMG signal. Breath detection using the GC can be improved by optimizing the algorithm. Transcutaneous dEMG provides similar breath detection but with the advantage of detecting the onset of inspiration earlier than the GC. © 2017 Wiley Periodicals, Inc.

Stable 1T-phase MoS2 as an effective electron mediator promoting photocatalytic hydrogen production.

PubMed

Shi, Jian-Wen; Zou, Yajun; Ma, Dandan; Fan, Zhaoyang; Cheng, Linhao; Sun, Diankun; Wang, Zeyan; Niu, Chunming; Wang, Lianzhou

2018-05-17

Coupling two semiconductors together to construct a Z-scheme type photocatalytic system is an efficient strategy to solve the serious recombination challenge of photogenerated electrons and holes. In this work, we develop a novel composite photocatalyst by sandwiching metallic 1T-phase MoS2 nanosheets between MoO3 and g-C3N4 (MoO3/1T-MoS2/g-C3N4) for the first time. The metallic 1T-phase MoS2 acts as an efficient electron mediator between MoO3 and g-C3N4 to construct an all-solid-state Z-scheme photocatalytic system, resulting in a highly-efficient spatial charge separation and transfer process. Benefiting from this, the newly developed MoO3/1T-MoS2/g-C3N4 exhibits a drastically enhanced photocatalytic H2 evolution rate of 513.0 μmol h-1 g-1 under visible light irradiation (>420 nm), which is nearly 12 times higher than that of the pure g-C3N4 (39.5 μmol h-1 g-1), and 3.5 times higher than that of MoO3/g-C3N4 (145.7 μmol h-1 g-1). More importantly, the originally unstable 1T-phase MoS2 becomes very stable in MoO3/1T-MoS2/g-C3N4 because of the sandwich structure where 1T-phase MoS2 is protected by MoO3 and g-C3N4, which endows the photocatalyst with excellent photostability. It is believed that this study will provide new insights into the design of efficient and stable Z-scheme heterostructures for photocatalytic applications.

52. SAR1, OPERATOR WORKING GOVERNOR. EEC print no. GC0100390, no ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

52. SAR-1, OPERATOR WORKING GOVERNOR. EEC print no. G-C-01-00390, no date. Photograph by Benjamin F. Pearson. - Santa Ana River Hydroelectric System, SAR-1 Powerhouse, Redlands, San Bernardino County, CA

Noble-metal-free g-C3N4/Ni(dmgH)2 composite for efficient photocatalytic hydrogen evolution under visible light irradiation

NASA Astrophysics Data System (ADS)

Cao, Shao-Wen; Yuan, Yu-Peng; Barber, James; Loo, Say Chye Joachim; Xue, Can

2014-11-01

We report an economic photocatalytic H2 generation system consisting of earth-abundant elements only by coupling graphitic carbon nitride (g-C3N4) with Ni(dmgH)2 sub-microwires that serve as effective co-catalysts for H2 evolution. This composite photocatalyst exhibits efficient hydrogen evolution under visible-light irradiation in the presence of triethanolamine as electron donor. The optimal coupling of 3.5 wt% Ni(dmgH)2 to g-C3N4 (5 mg composite) allows for a steady H2 generation rate of 1.18 μmol/h with excellent stability. This study demonstrates that the combination of polymeric g-C3N4 semiconductor and small proportion of transition-metal-based co-catalyst could serve as a stable, earth-abundant and low-cost system for solar-to-hydrogen conversion.

COSMIC-LAB: unveling the true nature of Terzan 5, a pristine fragment of the Galactic bulge

NASA Astrophysics Data System (ADS)

Ferraro, Francesco

2012-10-01

We have discovered that Terzan5, a stellar system in the Galactic bulge, harbors two stellar populations with different iron content {Delta[Fe/H] 0.5 dex} and possibly different ages {Ferraro et al. 2009, Nature 462, 483}. Moreover, the observed chemical patterns {Origlia et al. 2011, ApJ 726, L20} significantly differ from those observed in any known genuine GC. These evidences demonstrate that, similarly to omega Centauri in the halo, Terzan5 is NOT a genuine globular cluster {GC}, but a stellar system that was able to retain the gas ejected by violent supernova {SN} explosions.Indeed the striking chemical similarity with the bulge stars suggests that Terzan5 and the Galactic bulge shared the same star formation and chemical enrichment processes, driven by an exceptional amount of SNeII explosions {this is also the key to understand the origin of the extraordinary population of millisecond pulsars in Terzan5}. A quite intriguing scenario is emerging from these observations: Terzan5 could be the relic of one of the massive clumps that contributed {through strong dynamical interactions with other pre-formed and internally-evolved sub-structures} to the formation of the Galactic bulge.Here we propose to use the WFC3 to accurately measure the age of the two populations directly from the main sequence turn-off luminosities. Precisely dating the first and second burst of star formation is a crucial step for the correct reconstruction of the evolutionary history of Terzan5, with a significant impact on our comprehension of the formation processes of the Milky Way bulge and, more in general, of galactic spheroids.

A new method for total OH reactivity measurements using a fast Gas Chromatographic Photo-Ionization Detector (GC-PID)

NASA Astrophysics Data System (ADS)

Nölscher, A. C.; Sinha, V.; Bockisch, S.; Klüpfel, T.; Williams, J.

2012-05-01

The primary and most important oxidant in the atmosphere is the hydroxyl radical (OH). Currently OH sinks, particularly gas phase reactions, are poorly constrained. One way to characterize the overall sink of OH is to measure directly the ambient loss rate of OH, the total OH reactivity. To date direct measurements of total OH reactivity have been either performed using a Laser Induced Fluorescence (LIF) system ("pump-and-probe" or "flow reactor") or the Comparative Reactivity Method (CRM) with a Proton Transfer Reaction Mass Spectrometer (PTR-MS). Both techniques require large, complex and expensive detection systems. This study presents a feasibility assessment for CRM total OH reactivity measurements using a new detector, a Gas Chromatographic Photo-Ionization Detector (GC-PID). Such a system is smaller, more portable, less power consuming and less expensive than other total OH reactivity measurement techniques. Total OH reactivity is measured by the CRM using a competitive reaction between a reagent (here pyrrole) with OH alone and in the presence of atmospheric reactive molecules. The new CRM method for total OH reactivity has been tested with parallel measurements of the GC-PID and the previously validated PTR-MS as detector for the reagent pyrrole during laboratory experiments, plant chamber and boreal field studies. Excellent agreement of both detectors was found when the GC-PID was operated under optimum conditions. Time resolution (60-70 s), sensitivity (LOD 3-6 s-1) and overall uncertainty (25% in optimum conditions) for total OH reactivity were equivalent to PTR-MS based total OH reactivity measurements. One drawback of the GC-PID system was the steady loss of sensitivity and accuracy during intensive measurements lasting several weeks, and a possible toluene interference. Generally, the GC-PID system has been shown to produce closely comparable results to the PTR-MS and thus in suitable environments (e.g. forests) it presents a viably economical alternative for groups interested in total OH reactivity observations.

Total OH reactivity measurements using a new fast Gas Chromatographic Photo-Ionization Detector (GC-PID)

NASA Astrophysics Data System (ADS)

Nölscher, A. C.; Sinha, V.; Bockisch, S.; Klüpfel, T.; Williams, J.

2012-12-01

The primary and most important oxidant in the atmosphere is the hydroxyl radical (OH). Currently OH sinks, particularly gas phase reactions, are poorly constrained. One way to characterize the overall sink of OH is to measure directly the ambient loss rate of OH, the total OH reactivity. To date, direct measurements of total OH reactivity have been either performed using a Laser-Induced Fluorescence (LIF) system ("pump-and-probe" or "flow reactor") or the Comparative Reactivity Method (CRM) with a Proton-Transfer-Reaction Mass Spectrometer (PTR-MS). Both techniques require large, complex and expensive detection systems. This study presents a feasibility assessment for CRM total OH reactivity measurements using a new detector, a Gas Chromatographic Photoionization Detector (GC-PID). Such a system is smaller, more portable, less power consuming and less expensive than other total OH reactivity measurement techniques. Total OH reactivity is measured by the CRM using a competitive reaction between a reagent (here pyrrole) with OH alone and in the presence of atmospheric reactive molecules. The new CRM method for total OH reactivity has been tested with parallel measurements of the GC-PID and the previously validated PTR-MS as detector for the reagent pyrrole during laboratory experiments, plant chamber and boreal field studies. Excellent agreement of both detectors was found when the GC-PID was operated under optimum conditions. Time resolution (60-70 s), sensitivity (LOD 3-6 s-1) and overall uncertainty (25% in optimum conditions) for total OH reactivity were similar to PTR-MS based total OH reactivity measurements. One drawback of the GC-PID system was the steady loss of sensitivity and accuracy during intensive measurements lasting several weeks, and a possible toluene interference. Generally, the GC-PID system has been shown to produce closely comparable results to the PTR-MS and thus in suitable environments (e.g. forests) it presents a viably economical alternative for groups interested in total OH reactivity observations.

Miniature GC-Minicell Ion Mobility Spectrometer (IMS) for In Situ Measurements in Astrobiology Planetary Missions

NASA Technical Reports Server (NTRS)

Kojiro, Daniel R.; Stimac, Robert M.; Kaye, William J.; Holland, Paul M.; Takeuchi, Norishige

2006-01-01

Astrobiology flight experiments require highly sensitive instrumentation for in situ analysis of volatile chemical species and minerals present in the atmospheres and surfaces of planets, moons, and asteroids. The complex mixtures encountered place a heavy burden on the analytical instrumentation to detect and identify all species present. The use of land rovers and balloon aero-rovers place additional emphasis on miniaturization of the analytical instrumentation. In addition, smaller instruments, using tiny amounts of consumables, allow the use of more instrumentation and/or ionger mission life for stationary landers/laboratories. The miniCometary Ice and Dust Experiment (miniCIDEX), which combined Gas Chromatography (GC) with helium Ion Mobility Spectrometry (IMS), was capable of providing the wide range of analytical information required for Astrobiology missions. The IMS used here was based on the PCP model 111 IMS. A similar system, the Titan Ice and Dust Experiment (TIDE), was proposed as part of the Titan Orbiter Aerorover Mission (TOAM). Newer GC systems employing Micro Electro- Mechanical System (MEMS) based technology have greatly reduced both the size and resource requirements for space GCs. These smaller GCs, as well as the continuing miniaturization of Astrobiology analytical instruments in general, has highlighted the need for smaller, dry helium IMS systems. We describe here the development of a miniature, MEMS GC-IMS system (MEMS GC developed by Thorleaf Research Inc.), employing the MiniCell Ion Mobility Spectrometer (IMS), from Ion Applications Inc., developed through NASA's Astrobiology Science and Technology Instrument Development (ASTID) Program and NASA s Small Business Innovative Research (SBIR) Program.

Formation of Globular Clusters with Internal Abundance Spreads in r-Process Elements: Strong Evidence for Prolonged Star Formation

NASA Astrophysics Data System (ADS)

Bekki, Kenji; Tsujimoto, Takuji

2017-07-01

Several globular clusters (GCs) in the Galaxy are observed to show internal abundance spreads in r-process elements (e.g., Eu). We propose a new scenario that explains the origin of these GCs (e.g., M5 and M15). In this scenario, stars with no/little abundance variations first form from a massive molecular cloud (MC). After all of the remaining gas of the MC is expelled by numerous supernovae, gas ejected from asymptotic giant branch stars can be accumulated in the central region of the GC to form a high-density intracluster medium (ICM). Merging of neutron stars then occurs to eject r-process elements, which can be efficiently trapped in and subsequently mixed with the ICM. New stars formed from the ICM can have r-process abundances that are quite different from those of earlier generations of stars within the GC. This scenario can explain both (I) why r-process elements can be trapped within GCs and (II) why GCs with internal abundance spreads in r-process elements do not show [Fe/H] spreads. Our model shows (I) that a large fraction of Eu-rich stars can be seen in Na-enhanced stellar populations of GCs, as observed in M15, and (II) why most of the Galactic GCs do not exhibit such internal abundance spreads. Our model demonstrates that the observed internal spreads of r-process elements in GCs provide strong evidence for prolonged star formation (˜108 yr).

Morus alba and active compound oxyresveratrol exert anti-inflammatory activity via inhibition of leukocyte migration involving MEK/ERK signaling

PubMed Central

2013-01-01

Background Morus alba has long been used in traditional Chinese medicine to treat inflammatory diseases; however, the scientific basis for such usage and the mechanism of action are not well understood. This study investigated the action of M. alba on leukocyte migration, one key step in inflammation. Methods Gas chromatography-mass spectrometry (GC-MS) and cluster analyses of supercritical CO2 extracts of three Morus species were performed for chemotaxonomy-aided plant authentication. Phytochemistry and CXCR4-mediated chemotaxis assays were used to characterize the chemical and biological properties of M. alba and its active compound, oxyresveratrol. fluorescence-activated cell sorting (FACS) and Western blot analyses were conducted to determine the mode of action of oxyresveratrol. Results Chemotaxonomy was used to help authenticate M. alba. Chemotaxis-based isolation identified oxyresveratrol as an active component in M. alba. Phytochemical and chemotaxis assays showed that the crude extract, ethyl acetate fraction and oxyresveratrol from M. alba suppressed cell migration of Jurkat T cells in response to SDF-1. Mechanistic study indicated that oxyresveratrol diminished CXCR4-mediated T-cell migration via inhibition of the MEK/ERK signaling cascade. Conclusions A combination of GC-MS and cluster analysis techniques are applicable for authentication of the Morus species. Anti-inflammatory benefits of M. alba and its active compound, oxyresveratrol, may involve the inhibition of CXCR-4-mediated chemotaxis and MEK/ERK pathway in T and other immune cells. PMID:23433072

Morus alba and active compound oxyresveratrol exert anti-inflammatory activity via inhibition of leukocyte migration involving MEK/ERK signaling.

PubMed

Chen, Yi-Ching; Tien, Yin-Jing; Chen, Chun-Houh; Beltran, Francesca N; Amor, Evangeline C; Wang, Ran-Juh; Wu, Den-Jen; Mettling, Clément; Lin, Yea-Lih; Yang, Wen-Chin

2013-02-23

Morus alba has long been used in traditional Chinese medicine to treat inflammatory diseases; however, the scientific basis for such usage and the mechanism of action are not well understood. This study investigated the action of M. alba on leukocyte migration, one key step in inflammation. Gas chromatography-mass spectrometry (GC-MS) and cluster analyses of supercritical CO2 extracts of three Morus species were performed for chemotaxonomy-aided plant authentication. Phytochemistry and CXCR4-mediated chemotaxis assays were used to characterize the chemical and biological properties of M. alba and its active compound, oxyresveratrol. fluorescence-activated cell sorting (FACS) and Western blot analyses were conducted to determine the mode of action of oxyresveratrol. Chemotaxonomy was used to help authenticate M. alba. Chemotaxis-based isolation identified oxyresveratrol as an active component in M. alba. Phytochemical and chemotaxis assays showed that the crude extract, ethyl acetate fraction and oxyresveratrol from M. alba suppressed cell migration of Jurkat T cells in response to SDF-1. Mechanistic study indicated that oxyresveratrol diminished CXCR4-mediated T-cell migration via inhibition of the MEK/ERK signaling cascade. A combination of GC-MS and cluster analysis techniques are applicable for authentication of the Morus species. Anti-inflammatory benefits of M. alba and its active compound, oxyresveratrol, may involve the inhibition of CXCR-4-mediated chemotaxis and MEK/ERK pathway in T and other immune cells.

An Automated Strategy for Unbiased Morphometric Analyses and Classifications of Growth Cones In Vitro

PubMed Central

Chitsaz, Daryan; Morales, Daniel; Law, Chris; Kania, Artur

2015-01-01

During neural circuit development, attractive or repulsive guidance cue molecules direct growth cones (GCs) to their targets by eliciting cytoskeletal remodeling, which is reflected in their morphology. The experimental power of in vitro neuronal cultures to assay this process and its molecular mechanisms is well established, however, a method to rapidly find and quantify multiple morphological aspects of GCs is lacking. To this end, we have developed a free, easy to use, and fully automated Fiji macro, Conographer, which accurately identifies and measures many morphological parameters of GCs in 2D explant culture images. These measurements are then subjected to principle component analysis and k-means clustering to mathematically classify the GCs as “collapsed” or “extended”. The morphological parameters measured for each GC are found to be significantly different between collapsed and extended GCs, and are sufficient to classify GCs as such with the same level of accuracy as human observers. Application of a known collapse-inducing ligand results in significant changes in all parameters, resulting in an increase in ‘collapsed’ GCs determined by k-means clustering, as expected. Our strategy provides a powerful tool for exploring the relationship between GC morphology and guidance cue signaling, which in particular will greatly facilitate high-throughput studies of the effects of drugs, gene silencing or overexpression, or any other experimental manipulation in the context of an in vitro axon guidance assay. PMID:26496644

The Chemotaxonomy of Common Sage (Salvia officinalis) Based on the Volatile Constituents.

PubMed

Craft, Jonathan D; Satyal, Prabodh; Setzer, William N

2017-06-29

Background: Common sage ( Salvia officinalis ) is a popular culinary and medicinal herb. A literature survey has revealed that sage oils can vary widely in their chemical compositions. The purpose of this study was to examine sage essential oil from different sources/origins and to define the possible chemotypes of sage oil. Methods: Three different samples of sage leaf essential oil have been obtained and analyzed by GC-MS and GC-FID. A hierarchical cluster analysis was carried out on 185 sage oil compositions reported in the literature as well as the three samples in this study. Results: The major components of the three sage oils were the oxygenated monoterpenoids α-thujone (17.2-27.4%), 1,8-cineole (11.9-26.9%), and camphor (12.8-21.4%). The cluster analysis revealed five major chemotypes of sage oil, with the most common being a α-thujone > camphor > 1,8-cineole chemotype, of which the three samples in this study belong. The other chemotypes are an α-humulene-rich chemotype, a β-thujone-rich chemotype, a 1,8-cineole/camphor chemotype, and a sclareol/α-thujone chemotype. Conclusions: Most sage oils belonged to the "typical", α-thujone > camphor > 1,8-cineole, chemotype, but the essential oil compositions do vary widely and may have a profound effect on flavor and fragrance profiles as well as biological activities. There are currently no studies correlating sage oil composition with fragrance descriptions or with biological activities.

Chemical composition and antibacterial activity of Pinus halepensis Miller growing in West Northern of Algeria

PubMed Central

Fekih, Nadia; Allali, Hocine; Merghache, Salima; Chaïb, Faïza; Merghache, Djamila; El Amine, Mohamed; Djabou, Nassim; Muselli, Alain; Tabti, Boufeldja; Costa, Jean

2014-01-01

Objective To find new bioactive natural products, the chemical composition and to sudy the antibacterial activity of essential oil components extracted from the aerial parts of the Algerian aromatic plant Pinus halepensis Miller (P. halepensis) (needles, twigs and buds). Methods The essential oil used in this study was isolated by hydrodistillation using a Clevenger-type apparatus according to the European Pharmacopoeia. The chemical composition was investigated using GC-retention indices (RI) and GC-MS. Results Forty-nine compounds, representing 97.9% of the total collective oil, were identified. Essential oil was dominated by hydrocarbon compounds (80.6%) especially monoterpenes (65.5%). The major compounds from ten oils stations were: myrcene (15.2%-32.0%), α-pinene (12.2%-24.5%), E-β-caryophyllene (7.0%-17.1%), terpinolene (1.8%-13.3%), 2-phenyl ethyl isovalerate (4.8%-10.9%), terpinene-4-ol (1.0%-8.2 %) and sabinene (1.5%-6.3%). The intra-species variations of the chemical compositions of P. halepensis aerial parts essential oils from ten Algerian sample locations were investigated using statistical analysis. Essential oil samples were clustered in 2 groups by hierarchical cluster analysis, according to their chemical composition. The essential oil revealed an interesting antimicrobial effect against Lysteria monocytogenes, Enterococcus faecalis, Pseudomonas aeruginosa, Acinetobacter baumanii, Citrobacter freundii and Klebsiella pneumoniae. Conclusions These results suggest that the essential oil from P. halepensis may be a new potential source as natural antimicrobial applied in pharmaceutical and food industries.

Quantitative analysis of essential oils of Thymus daenensis using laser-induced fluorescence and Raman spectroscopy.

PubMed

Khoshroo, H; Khadem, H; Bahreini, M; Tavassoli, S H; Hadian, J

2015-11-10

Laser-induced fluorescence and Raman spectroscopy are used for the investigation of different genotypes of Thymus daenensis native to the Ilam province of Iran. Different genotypes of T. daenensis essential oils, labeled T1 through T7, possess slight differences with regard to the composition of the thymol. The gas chromatography-mass spectrometry (GC-MS) method is performed to determine the concentration of each constituent as a reference method. The Raman spectra of different concentrations of pure thymol dissolved in hexane as standard samples are obtained via a laboratory prototype Raman spectroscopy setup for the calculation of the calibration curve. The regression coefficient and limit of detection are calculated. The possibility of the differentiation of different genotypes of T. daenensis is also examined by laser-induced fluorescence spectroscopy, although we do not know the exact amounts of their components. All the fluorescence spectral information is used jointly by cluster analysis to differentiate between 7 genotypes. Our results demonstrate the acceptable precision of Raman spectroscopy with GC-MS and corroborate the capacity of Raman spectroscopy in applications in the quantitative analysis field. Furthermore, the cluster analysis results show that laser-induced fluorescence spectroscopy is an acceptable technique for the rapid classification of different genotypes of T. daenensis without having any previous information of their exact amount of constituents. So, the ability to rapidly and nondestructively differentiate between genotypes makes it possible to efficiently select high-quality herbs from many samples.

Large-scale Granger causality analysis on resting-state functional MRI

NASA Astrophysics Data System (ADS)

D'Souza, Adora M.; Abidin, Anas Zainul; Leistritz, Lutz; Wismüller, Axel

2016-03-01

We demonstrate an approach to measure the information flow between each pair of time series in resting-state functional MRI (fMRI) data of the human brain and subsequently recover its underlying network structure. By integrating dimensionality reduction into predictive time series modeling, large-scale Granger Causality (lsGC) analysis method can reveal directed information flow suggestive of causal influence at an individual voxel level, unlike other multivariate approaches. This method quantifies the influence each voxel time series has on every other voxel time series in a multivariate sense and hence contains information about the underlying dynamics of the whole system, which can be used to reveal functionally connected networks within the brain. To identify such networks, we perform non-metric network clustering, such as accomplished by the Louvain method. We demonstrate the effectiveness of our approach to recover the motor and visual cortex from resting state human brain fMRI data and compare it with the network recovered from a visuomotor stimulation experiment, where the similarity is measured by the Dice Coefficient (DC). The best DC obtained was 0.59 implying a strong agreement between the two networks. In addition, we thoroughly study the effect of dimensionality reduction in lsGC analysis on network recovery. We conclude that our approach is capable of detecting causal influence between time series in a multivariate sense, which can be used to segment functionally connected networks in the resting-state fMRI.

A new model for the multiple stellar populations within Terzan 5

NASA Astrophysics Data System (ADS)

McKenzie, M.; Bekki, K.

2018-06-01

Recent observational studies have demonstrated that the complex stellar system Terzan 5 (Ter 5) harbours multiple populations of stars. Several models have attempted to interpret the large age difference of several Gyrs between the dominant populations, but none have been universally accepted. We propose a new scenario whereby a collision between a metal-poor Ter 5 and a giant molecular cloud (GMC) serves as a catalyst for the generation of a super-solar population of stars. Using numerical simulations of this new "GC-GMC" collision scenario we demonstrate that, within a time frame of several Gyrs, our synthetic Ter 5 was capable of interacting with a metal-rich GMC in the central region of the Galaxy. As a consequence of this, our simulated globular cluster (GC) is able to capture enough gas from the colliding GMC to form a new population of metal-rich stars. Furthermore, the younger population created from the high-density regions of the captured gas is shown to have a stronger central mass concentration than the older metal-poor one, which is consistent with observations. A chemical link between Ter 5 and the bulge population of the Milky Way has long been observed and these simulations finally provide evidence for their similarities. Our model rationalises the 5 Gyrs of quiescence observed between the two dominant populations of Ter 5 and justifies the existence of the young generation. We discuss the advantages and disadvantages of the new scenario in the context of the observed physical properties of Ter 5.

Chromatographic fingerprinting through chemometric techniques for herbal slimming pills: A way of adulterant identification.

PubMed

Shekari, Nafiseh; Vosough, Maryam; Tabar Heidar, Kourosh

2018-05-01

In the current study, gas chromatography-mass spectrometry (GC-MS) fingerprinting of herbal slimming pills assisted by chemometric methods has been presented. Deconvolution of two-way chromatographic signals of nine herbal slimming pills into pure chromatographic and spectral patterns was performed. The peak clusters were resolved using multivariate curve resolution-alternating least squares (MCR-ALS) by employing appropriate constraints. It was revealed that more useful chemical information about the composition of the slimming pills can be obtained by employing sophisticated GC-MS method coupled with proper chemometric tools yielding the extended number of identified constituents. The thorough fingerprinting of the complex mixtures proved the presence of some toxic or carcinogen components, such as toluene, furfural, furfuryl alcohol, styrene, itaconic anhydride, citraconic anhydride, trimethyl phosphate, phenol, pyrocatechol, p-propenylanisole and pyrogallol. In addition, some samples were shown to be adulterated with undeclared ingredients, including stimulants, anorexiant and laxatives such as phenolphthalein, amfepramone, caffeine and sibutramine. Copyright © 2018 Elsevier B.V. All rights reserved.

Emission Lines in the Near-infrared Spectra of the Infrared Quintuplet Stars in the Galactic Center

DOE Office of Scientific and Technical Information (OSTI.GOV)

Najarro, F.; Geballe, T. R.; Figer, D. F.

We report the detection of a number of emission lines in the 1.0–2.4 μ m spectra of four of the five bright-infrared dust-embedded stars at the center of the Galactic center’s (GC) Quintuplet Cluster. Spectroscopy of the central stars of these objects is hampered not only by the large interstellar extinction that obscures all of the objects in the GC, but also by the large amounts of warm circumstellar dust surrounding each of the five stars. The pinwheel morphologies of the dust observed previously around two of them are indicative of Wolf–Rayet colliding wind binaries; however, infrared spectra of eachmore » of the five have until now revealed only dust continua steeply rising to long wavelengths and absorption lines and bands from interstellar gas and dust. The emission lines detected, from ionized carbon and from helium, are broad and confirm that the objects are dusty late-type carbon Wolf–Rayet stars.« less

Metabolite changes in nine different soybean varieties grown under field and greenhouse conditions.

PubMed

Maria John, K M; Natarajan, Savithiry; Luthria, Devanand L

2016-11-15

Global food security remains a worldwide concern due to changing climate, increasing population, and reduced agriculture acreages. Greenhouse cultivation increases productivity by extending growing seasons, reducing pest infestations and providing protection against short term drastic weather fluctuations like frost, heat, rain, and wind. In the present study, we examined and compared the metabolic responses of nine soybean varieties grown under field and greenhouse conditions. Extracts were assayed by GC-FID, GC-MS, and LC-MS for the identification of 10 primary (amino acids, organic acids, and sugars) and 10 secondary (isoflavones, fatty acid methyl esters) metabolites. Sugar molecules (glucose, sucrose, and pinitol) and isoflavone aglycons were increased but the isoflavones glucoside content decreased in the greenhouse cultivated soybeans. The amino acids and organic acids varied between the varieties. The results show that clustering (PCA and PLS-DA) patterns of soybean metabolites were significantly influenced by the genetic variation and growing conditions. Published by Elsevier Ltd.

Salt-Induced Universal Slowing Down of the Short-Time Self-Diffusion of a Globular Protein in Aqueous Solution

DOE PAGES

Grimaldo, Marco; Roosen-Runge, Felix; Hennig, Marcus; ...

2015-06-17

The short-time self-diffusion D of the globular model protein bovine serum albumin in aqueous (D 2O) solutions has been measured comprehensively as a function of the protein and trivalent salt (YCl 3) concentration, noted c p and c s, respectively. We observe that D follows a universal master curve D(c s,c p) = D(c s = 0,c p) g(c s/c p), where D(c s= 0,c p) is the diffusion coefficient in the absence of salt and g(c s/c p) is a scalar function solely depending on the ratio of the salt and protein concentration. This observation is consistent with amore » universal scaling of the bonding probability in a picture of cluster formation of patchy particles. In conclusion, the finding corroborates the predictive power of the description of proteins as colloids with distinct attractive ion-activated surface patches.« less

A chemometrics as a powerful tool in the elucidation of the role of metals in the biosynthesis of volatile organic compounds in Hungarian thyme samples.

PubMed

Arsenijević, Jelena; Marković, Jelena; Soštarić, Ivan; Ražić, Slavica

2013-10-01

The volatile fraction of the leaves of Thymus pannonicus All. (Lamiaceae) was analyzed by headspace extraction followed by GC-FID and GC-MS analysis. The different headspace profiles were recognized, with citral and with monoterpene hydrocarbons as dominant compounds. In addition, the determination of Cr, Co, Ni, Mo, Cu, Zn, Mn, Fe, Mg, Ca, K and Na was conducted by spectroscopic techniques (FAAS, GFAAS and ICP-OES). In order to evaluate the relationship between volatile organic compounds and metals, a chemometrics approach was applied. The data obtained by analysis of the headspace and elemental content were subjected to correlation analysis, factor analysis, principal component analysis and cluster analysis. A number of significant correlations of metals with plant volatiles were found. Correlation of Zn with citral, Mn with oxygenated monoterpenes and Mg with β-bourbonene, could be explained by involvement of metals in the biosynthesis of volatile organic compounds. Copyright © 2013 Elsevier Masson SAS. All rights reserved.

"More than Honey": Investigation on Volatiles from Monovarietal Honeys Using New Analytical and Sensory Approaches.

PubMed

Siegmund, Barbara; Urdl, Katharina; Jurek, Andrea; Leitner, Erich

2018-03-14

Eight monovarietal honeys from dandelion, fir tree, linden tree, chestnut tree, robinia, orange, lavender, and rape were investigated with respect to their volatile compounds and sensory properties. Analysis of the volatile compounds was performed by gas chromatographic techniques (one-dimensional GC-MS as well as comprehensive GC×GC-MS). For sensory evaluation Napping in combination with ultraflash profiling was applied using sensory experts. For dandelion honey, 34 volatile compounds are described for the first time to be present in dandelion honey. PCA and cluster analysis of the volatile compounds, respectively, show high correlation with the PCA obtained from sensory evaluation. Lavender and linden honey showed sensory characteristics that were not expected from these honey types. Analysis of the volatile compounds resulted in the identification of odor-active compounds that are very likely derived from sources other than the respective honeyflow. Contamination with essential oils used in apiculture is very likely to be the reason for the occurrence of these compounds in the investigated honeys.

Ripening-dependent metabolic changes in the volatiles of pineapple (Ananas comosus (L.) Merr.) fruit: I. Characterization of pineapple aroma compounds by comprehensive two-dimensional gas chromatography-mass spectrometry.

PubMed

Steingass, Christof Björn; Carle, Reinhold; Schmarr, Hans-Georg

2015-03-01

Qualitative ripening-dependent changes of pineapple volatiles were studied via headspace solid-phase microextraction and analyzed by comprehensive two-dimensional gas chromatography quadrupole mass spectrometry (HS-SPME-GC×GC-qMS). Early green-ripe stage, post-harvest ripened, and green-ripe fruits at the end of their commercial shelf-life were compared to air-freighted pineapples harvested at full maturity. In total, more than 290 volatiles could be identified by mass spectrometry and their linear retention indices. The majority of compounds comprise esters (methyl and ethyl esters of saturated and unsaturated fatty acids, acetates), terpenes, alcohols, aldehydes, 2-ketones, free fatty acids, and miscellaneous γ- and δ-lactones. The structured separation space obtained by GC×GC allowed revealing various homologous series of compound classes as well as clustering of sesquiterpenes. Post-harvest ripening increased the diversity of the volatile profile compared to both early green-ripe maturity stages and on-plant ripened fruits.

Preliminary study on biomarkers for the fungal resistance in Vitis vinifera leaves.

PubMed

Batovska, Daniela Ilieva; Todorova, Iva Todorova; Nedelcheva, Daniela Valentinova; Parushev, Stoyan Parushev; Atanassov, Atanas Ivanov; Hvarleva, Tzvetanka Dimitrova; Djakova, Galina Jordanova; Bankova, Vassya Stefanova; Popov, Simeon Simeonov

2008-05-26

We examined the leaf chemical composition of six seedlings obtained by self-pollination of the Bulgarian wine-making variety Storgozia as well as the cultivar Bouquet, which is the susceptible parent of Storgozia. The chemical composition was investigated in the framework of a program for identification of metabolites associated with disease resistance in grape-vine. Acetone, dichloromethane and butanol extracts, as well as volatiles obtained from fresh material were analyzed by GC/MS. Based on the correlations of the GC/MS data and estimated resistance of the leaves towards the etiological agents of powdery mildew, downy mildew and botrytis as biomarkers for the fungal resistance, we proposed 16 individual metabolites--alpha- and gamma-tocopherol, squalene, alpha-amyrine, stigmasta-3,5-diene-7-one, hexahydrofarnesyl acetone, glycolic acid, 3-hydroxybutanoic acid, 3-hydroxycaproic acid, malic acid, tartaric acid, erythronic acid, arabinoic acid, monoethyl phosphate, undecyl laurate and isopropyl myristate. The obtained correlations were confirmed by cluster analysis.

A field-deployable GC-EI-HRTOF-MS for in situ characterization of volatile organic compounds

NASA Astrophysics Data System (ADS)

Lerner, B. M.; Herndon, S. C.; Yacovitch, T. I.; Roscioli, J. R.; Fortner, E.; Knighton, W. B.; Sueper, D.; Isaacman-VanWertz, G. A.; Jayne, J. T.; Worsnop, D. R.

2017-12-01

Previous authors have demonstrated the value of coupling conventional gas chromatograph (GC) separation techniques with the new generation of electron-impact high-resolution time-of-flight mass spectrometry (EI-HR-ToF-MS) detectors for the measurement of halocarbons and semi-volatile organic species. Here, we present new instrumentation, analytical techniques and field data from the deployment of a GC-EI-HR-ToF-MS system in the mini Aerodyne mobile laboratory to sites upwind and downwind of San Antonio, Texas in May 2017. The instrument employed a multi-component adsorbent trap pre-concertation system followed by single-column separation. We will show results from the field work, including inter-comparison with other VOC measurements and characterization of C5-C10 hydrocarbon mixing ratios to distinguish urban and oil/gas emission sources in characterized air. We will discuss practical aspects of deployment of the GC-EI-HRTOF-MS in a mobile laboratory and system performance in the field. Will we also present further development of Aerodyne's TERN software package for chromatographic data analysis to processing of HRTOF-MS datasets.

Characterization of ion processes in a GC/DMS air quality monitor by integration of the instrument to a mass spectrometer.

PubMed

Limero, T F; Nazarov, E G; Menlyadiev, M; Eiceman, G A

2015-02-07

The air quality monitor (AQM), which included a portable gas chromatograph (GC) and a detector was interfaced to a mass spectrometer (MS) by introducing flow from the GC detector to the atmospheric pressure ion source of the MS. This small GC system, with a gas recirculation loop for carrier and detector make-up gases, comprised an inlet to preconcentrate volatile organic compounds (VOCs) in air, a thermal desorber before the GC column, a differential mobility spectrometer (DMS), and another DMS as an atmospheric pressure ionization source for the MS. Return flow to the internally recirculated air system of the AQM's DMS was replenished using purified air. Although ions and unreacted neutral vapors flowed from the detector through Viton® tubing into the source of the MS, ions were not detected in the MS without the auxillary ion source, (63)Ni as in the mobility detector. The GC-DMS-MS instrument provided a 3-D measurement platform (GC, DMS, and MS analysis) to explore the gas composition inside the GC-DMS recirculation loop and provide DMS-MS measurement of the components of a complex VOC mixture with performance significantly enhanced by mass-analysis, either with mass spectral scans or with an extracted ion chromatogram. This combination of a mobility spectrometer and a mass spectrometer was possible as vapors and ions are carried together through the DMS analyzer, thereby preserving the chromatographic separation efficiency. The critical benefit of this instrument concept is that all flows in and through the thoroughly integrated GC-DMS analyzer are kept intact allowing a full measure of the ion and vapor composition in the complete system. Performance has been evaluated using a synthetic air sample and a sample of airborne vapors in a laboratory. Capabilities and performance values are described using results from AQM-MS analysis of purified air, ambient air from a research laboratory in a chemistry building, and a sample of synthetic air of known composition. Quantitative measures of a stand-alone AQM are disclosed for VOCs in the ppb to ppm levels with an average precision of 5.8% RSD and accuracy from 4% to 28% error against a standard method.

GC and GC-MS determination of fluoroacetic acid and phenoxy acid herbicides via triphasal extractive pentafluorobenzylation using a polymer-bound phase-transfer catalyst.

PubMed

Miki, A; Tsuchihashi, H; Yamashita, M

1998-01-01

A simple and sensitive gas chromatography and gas chromatography-mass spectrometry (GC-MS) procedure has been developed for fluoroacetic acid (FA) and phenoxy acid herbicides (PAHs) via triphasal extractive pentafluorobenzylation. The triphasal system consisted of an aqueous sample, the extraction solvent toluene containing pentafluorobenzyl bromide as the derivatization reagent, and polymer-bound tri-n-butyl-methylphosphonium bromide as a phase-transfer catalyst, FA spiked in beverages, such as orange juice and milk, was extracted as its pentafluorobenzyl (PFB) derivative under moderate conditions (i.e., at a pH value of 6.5 at 60 degrees C). The detection limits were 0.10-0.20 microgram/mL by GC with electron-capture detection (GC-ECD), and 0.42-0.50 microgram/mL by full-scan GC-MS. PAHs were also detectable in the same manner within the detection limits of 0.05-0.10 microgram/mL by GC-ECD and 0.13-0.25 microgram/mL by full-scan GC-MS. Urine and serum which both contained 2,4-dichlorophenoxyacetic acid could also be analyzed by GC-MS after the triphasal pentafluorobenzylation. The detection limit was 0.20 microgram/mL in the full-scan mode and 10 ng/mL in the selected ion monitoring mode both for the urine and serum.

[Clinical application of mass spectrometry in the pediatric field: current topics].

PubMed

Yamaguchi, Seiji

2013-09-01

Mass spectrometry, including tandem mass spectrometry (MS/MS) and gas chromatography-mass spectrometry (GC/MS), is becoming prominent in the diagnosis of metabolic disorders in the pediatric field. It enables biochemical diagnosis of metabolic disorders from the metabolic profiles obtained by MS/MS and/or GC/MS. In neonatal mass screening for inherited metabolic disease (IMD) using MS/MS, amino acids and acylcarnitines on dried blood spots are analyzed. The target diseases include amino acidemia, urea cycle disorder, organic acidemia, and fatty acid oxidation disorder. In the MS/MS screening, organic acid analysis using GC/MS is required for differential and/or definite diagnosis of the IMDs. GC/MS data processing, however, is difficult, and metabolic diagnosis often requires the necessary skills and expertize. We developed an automated system of GC/MS data processing and autodiagnosis, and the biochemical diagnosis using GC/MS became markedly easier and user-friendly. Mass spectrometric techniques will expand from research laboratories to clinical laboratories in the near future.

Synthesis of ternary g-C3N4/Ag/γ-FeOOH photocatalyst: An integrated heterogeneous Fenton-like system for effectively degradation of azo dye methyl orange under visible light

NASA Astrophysics Data System (ADS)

He, Donglin; Chen, Yanfeng; Situ, Yue; Zhong, Li; Huang, Hong

2017-12-01

g-C3N4/Ag/γ-FeOOH photocatalyst was prepared and the synergy of photocatalysis with heterogeneous Fenton-like process was measured by degrading methyl Orange(MO). g-C3N4 can apply electron for γ-FeOOH to change Fe3+ to Fe2+, and γ-FeOOH can help g-C3N4 to enhance the absorption of visible light. The Ag nanoparticles were photo deposited on the layer of γ-FeOOH and g-C3N4 for the separation of electron-holes. g-C3N4(5%)/Ag/γ-FeOOH showed the great ability to degrade MO, and the optimal concentration of H2O2, the effect of pH and the stability of the photocatalyst and synergistic mechanism of photocatalysity with heterogeneous Fenton-like process were also discussed in this study.

Detection of virgin coconut oil adulteration with animal fats using quantitative cholesterol by GC × GC-TOF/MS analysis.

PubMed

Xu, Baocheng; Li, Peiwu; Ma, Fei; Wang, Xiuping; Matthäus, Bertrand; Chen, Ran; Yang, Qingqing; Zhang, Wen; Zhang, Qi

2015-07-01

A new method based on the cholesterol level was developed to detect the presence of animal fats in virgin coconut oil (VCO). In this study, the sterols in VCO and animal fats was separated using conventional one-dimensional gas chromatography (1D GC) and comprehensive two-dimensional gas chromatography (GC×GC). Compared with 1D GC, the GC×GC system could obtain a complete baseline separation of the sterol trimethylsilyl ethers derived from cholesterol and cholestanol, so that the cholesterol content in pure VCO and false VCO adulterated with animal fats could be accurately determined. Cholesterol, a main sterol found in animal fats, represented less than 5mg/kg of VCO. The study demonstrated that the determination of the cholesterol level in VCO could be used for reliable detection of the presence of lard, chicken fat, mutton tallow, beef tallow, or their mixture in VCO at a level as little as 0.25%. Copyright © 2015 Elsevier Ltd. All rights reserved.

A volatile organic analyzer for Space Station: Description and evaluation of a gas chromatography/ ion mobility

NASA Technical Reports Server (NTRS)

Limero, Thomas F.; James, John T.

1994-01-01

A Volatile Organic Analyzer (VOA) is being developed as an essential component of the Space Station's Environmental Health System (EHS) air quality monitoring strategy to provide warning to the crew and ground personnel if volatile organic compounds exceed established exposure limits. The short duration of most Shuttle flights and the relative simplicity of the contaminant removal mechanism have lessened the concern about crew exposure to air contaminants on the Shuttle. However, the longer missions associated with the Space Station, the complex air revitalization system and the proposed number of experiments have led to a desire for real-time monitoring of the contaminants in the Space Station atmosphere. Achieving the performance requirements established for the VOA within the Space Station resource (e.g., power, weight) allocations led to a novel approach that joined a gas chromatograph (GC) to an ion mobility spectrometer (IMS). The authors of this paper will discuss the rational for selecting the GC/IMS technology as opposed to the more established gas chromatography/mass spectrometry (GC/MS) for the foundation of the VOA. The data presented from preliminary evaluations will demonstrate the versatile capability of the GC/IMS to analyze the major contaminants expected in the Space Station atmosphere. The favorable GC/IMS characteristics illustrated in this paper included excellent sensitivity, dual-mode operation for selective detection, and mobility drift times to distinguish co-eluting GC peaks. Preliminary studies have shown that the GC/IMS technology can meet surpass the performance requirements of the Space Station VOA.

MiR-146a rs2910164 polymorphism increases the risk of digestive system cancer: A meta-analysis.

PubMed

Xie, Wen Qun; Wang, Xiao Fan

2017-02-01

There is merging evidence suggesting that the miR-146a polymorphism might be associated with susceptibility to digestive system cancer. However, previous published studies have failed to achieve a definitive conclusion. To address this issue, an updated meta-analysis was performed. A comprehensive electronic search was conducted using the following source to identify the eligible studies: PubMed, Embase, China BioMedicine, the Cochrane Library, and Google Scholar. Odds ratios and its corresponding 95% confidence interval (CI) was used in the quantitative synthesis. The database search identified 1344 eligible studies, of which 32 (comprising 12,541 cases and 15,925 controls) were included. The results indicate that the miR-146a rs2910164 polymorphism was significantly associated with increased risk of digestive system cancer in heterozygote comparison (GC vs. CC: OR=1.15, 95% CI: 1.02-1.30, P=0.02), and recessive model (GG vs. GC+CC: OR=1.11, 95% CI: 1.04-1.17, P=0.006). Subgroup analysis by cancer site revealed increased risk in gastric cancer above heterozygote comparison (GG vs. GC: OR=1.13, 95% CI: 1.02-1.25, P=0.02), and recessive model (GG vs. GC+CC: OR=1.15, 95% CI: 1.04-1.26, P=0.006). Similarly, increased cancer risk was observed in hepatocellular carcinoma when compared with homozygote comparison (GG vs. CC: OR=1.21, 95% CI: 1.04-1.42, P=0.02), heterozygote comparison (GC vs. CC: OR=1.15, 95% CI: 1.02-1.29, P=0.02), and dominant model (GG+GC vs. CC: OR=1.16, 95% CI: 1.04-1.29, P=0.009). When stratified by ethnicity and quality score, increased cancer risks were also observed among Asians, Caucasians and high quality studies subgroup. The current study revealed that miR-146a G/C genetic polymorphism was more likely to be associated with digestive system cancer risk. Copyright © 2016 Elsevier Masson SAS. All rights reserved.

Near-real-time combustion monitoring for PCDD/PCDF indicators by GC-REMPI-TOFMS.

PubMed

Gullett, Brian K; Oudejans, Lukas; Tabor, Dennis; Touati, Abderrahmane; Ryan, Shawn

2012-01-17

The boiler exit flue gas of a municipal waste combustor was sampled to evaluate an online monitoring system for chlorobenzene congeners as indicators of polychlorinated dibenzodioxin and dibenzofuran (PCDD/PCDF) concentrations. Continuous measurements of chlorobenzene congeners using gas chromatography coupled to a resonance-enhanced multiphoton ionization - time-of-flight mass spectrometry (GC-REMPI-TOFMS) system were compared over 5-min periods with conventional sampling methods for PCDD/PCDF. Three pairs of values were taken every hour over a period of three days to characterize the combustor's response to transient operating conditions (shutdowns and startups). Isolation of specific chlorobenzene congeners from other same-mass compounds was accomplished by using a GC column separator ahead of the REMPI-TOFMS. The 50-fold variation of PCDD/PCDF concentration was paralleled by similar changes in monitored compounds of 1,4-dichlorobenzene, 1,2,4-trichlorobenzene, 1,2,3-trichlorobenzene, and 1,2,4,5-tetrachlorobenzene. A correlation of R = 0.85 and 0.89 was established between 40 pairs of simultaneous 5-min GC-REMPI-TOFMS measurements of 1,2,4-trichlorobenzene and 5 min conventional sampling and analysis for the TEQ and Total measures of PCDD/PCDF, respectively. The GC-REMPI-TOFMS system can be used to provide frequent measures of correlative PCDD/PCDF concentration thereby allowing for an understanding of measures to minimize PCDD/PCDF formation and develop operational feedback to limit emissions.

Differentiation of Volatile Profiles from Stockpiled Almonds at Varying Relative Humidity Levels Using Benchtop and Portable GC-MS.

PubMed

Beck, John J; Willett, Denis S; Gee, Wai S; Mahoney, Noreen E; Higbee, Bradley S

2016-12-14

Contamination by aflatoxin, a toxic metabolite produced by Aspergillus fungi ubiquitous in California almond and pistachio orchards, results in millions of dollars of lost product annually. Current detection of aflatoxin relies on destructive, expensive, and time-intensive laboratory-based methods. To explore an alternative method for the detection of general fungal growth, volatile emission profiles of almonds at varying humidities were sampled using both static SPME and dynamic needle-trap SPE followed by benchtop and portable GC-MS analysis. Despite the portable SPE/GC-MS system detecting fewer volatiles than the benchtop system, both systems resolved humidity treatments and identified potential fungal biomarkers at extremely low water activity levels. This ability to resolve humidity levels suggests that volatile profiles from germinating fungal spores could be used to create an early warning, nondestructive, portable detection system of fungal growth.

Capillary electrophoresis in two-dimensional separation systems: Techniques and applications.

PubMed

Kohl, Felix J; Sánchez-Hernández, Laura; Neusüß, Christian

2015-01-01

The analysis of complex samples requires powerful separation techniques. Here, 2D chromatographic separation techniques (e.g. LC-LC, GC-GC) are increasingly applied in many fields. Electrophoretic separation techniques show a different selectivity in comparison to LC and GC and very high separation efficiency. Thus, 2D separation systems containing at least one CE-based separation technique are an interesting alternative featuring potentially a high degree of orthogonality. However, the generally small volumes and strong electrical fields in CE require special coupling techniques. These technical developments are reviewed in this work, discussing benefits and drawbacks of offline and online systems. Emphasis is placed on the design of the systems, their coupling, and the detector used. Moreover, the employment of strategies to improve peak capacity, resolution, or sensitivity is highlighted. Various applications of 2D separations with CE are summarized. © 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Oleic Acid, deglycosylated vitamin D-binding protein, nitric oxide: a molecular triad made lethal to cancer.

PubMed

Ruggiero, Marco; Ward, Emma; Smith, Rodney; Branca, Jacopo J V; Noakes, David; Morucci, Gabriele; Taubmann, Margit; Thyer, Lynda; Pacini, Stefania

2014-07-01

Oleic Acid (OA) has been shown to have anticancer properties mediated by interaction with proteins such as α-lactalbumin and lactoferrins. Therefore, we synthesized complexes of OA and Gc protein-derived macrophage activating factor (GcMAF) that inhibits per se cancer cell proliferation and metastatic potential. We hypothesised that OA-GcMAF complexes could exploit the anticancer properties of both OA and GcMAF in a synergistic manner. We postulated that the stimulating effects of GcMAF on macrophages might lead to release of nitric oxide (NO). Patients with advanced cancer were treated at the Immuno Biotech Treatment Centre with OA-GcMAF-based integrative immunotherapy in combination with a low-carbohydrate, high-protein diet, fermented milk products containing naturally-produced GcMAF, Vitamin D3, omega-3 fatty acids and low-dose acetylsalicylic acid. Measuring the tumour by ultrasonographic techniques, we observed a decrease of tumour volume of about 25%. These observations demonstrate that OA, GcMAF and NO can be properly combined and specifically delivered to advanced cancer patients with significant effects on immune system stimulation and tumour volume reduction avoiding harmful side-effects. Copyright© 2014 International Institute of Anticancer Research (Dr. John G. Delinassios), All rights reserved.

Mechanism of action of glucocorticoids in nasal polyposis.

PubMed

Fernandes, Atílio Maximino; Valera, Fabiana Cardoso Pereira; Anselmo-Lima, Wilma T

2008-01-01

Glucocorticoids (GC) are the drugs of choice for the clinical treatment of nasal polyposis, according to the medical literature. Its mechanism of action in the regression of clinical symptoms and polyps, however, is not fully understood. The topical and/or systemic use of glucocorticoids lead to variable expression of cytokines, chemokines and lymphokines, as well as changes in cells. It is known that GC suppresses the expression of pro-inflammatory cytokines, chemokines and adhesion molecules such as ICAM-1 and E-selectin; GC also stimulate the transcription of anti-inflammatory cytokines such as TGF-b. GC suppress pro-fibrotic cytokines related to polyp growth, such as IL-11, the basic fibroblast growth factor (b-FGF), and the vascular endotelial growth factor (VEGF). The action of GC depends fundamentally on their interaction with receptors (GR); certain subjects have a degree of resistance to its effect, which appears to be related with the presence of a b isoform of GR. GC also act variably on the genes involved in immunoglobulin production, presentation, and antigen processing. We present a review of the literature on the mechanisms of GC action in nasal polyosis. Understanding the mechanism of action of GC in nasal polyposis will aid in the development of new, more efficient, drugs.

Monitoring/Verification using DMS: TATP Example

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stephan Weeks, Kevin Kyle, Manuel Manard

Field-rugged and field-programmable differential mobility spectrometry (DMS) networks provide highly selective, universal monitoring of vapors and aerosols at detectable levels from persons or areas involved with illicit chemical/biological/explosives (CBE) production. CBE sensor motes used in conjunction with automated fast gas chromatography with DMS detection (GC/DMS) verification instrumentation integrated into situational operations-management systems can be readily deployed and optimized for changing application scenarios. The feasibility of developing selective DMS motes for a “smart dust” sampling approach with guided, highly selective, fast GC/DMS verification analysis is a compelling approach to minimize or prevent the illegal use of explosives or chemical and biologicalmore » materials. DMS is currently one of the foremost emerging technologies for field separation and detection of gas-phase chemical species. This is due to trace-level detection limits, high selectivity, and small size. Fast GC is the leading field analytical method for gas phase separation of chemical species in complex mixtures. Low-thermal-mass GC columns have led to compact, low-power field systems capable of complete analyses in 15–300 seconds. A collaborative effort optimized a handheld, fast GC/DMS, equipped with a non-rad ionization source, for peroxide-based explosive measurements.« less

Monitoring/Verification Using DMS: TATP Example

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kevin Kyle; Stephan Weeks

Field-rugged and field-programmable differential mobility spectrometry (DMS) networks provide highly selective, universal monitoring of vapors and aerosols at detectable levels from persons or areas involved with illicit chemical/biological/explosives (CBE) production. CBE sensor motes used in conjunction with automated fast gas chromatography with DMS detection (GC/DMS) verification instrumentation integrated into situational operationsmanagement systems can be readily deployed and optimized for changing application scenarios. The feasibility of developing selective DMS motes for a “smart dust” sampling approach with guided, highly selective, fast GC/DMS verification analysis is a compelling approach to minimize or prevent the illegal use of explosives or chemical and biologicalmore » materials. DMS is currently one of the foremost emerging technologies for field separation and detection of gas-phase chemical species. This is due to trace-level detection limits, high selectivity, and small size. GC is the leading analytical method for the separation of chemical species in complex mixtures. Low-thermal-mass GC columns have led to compact, low-power field systems capable of complete analyses in 15–300 seconds. A collaborative effort optimized a handheld, fast GC/DMS, equipped with a non-rad ionization source, for peroxide-based explosive measurements.« less

System and method for preconcentrating, identifying, and quantifying chemical and biological substances

DOEpatents

Yu, Conrad M.; Koo, Jackson C.

2000-01-01

A system and method for preconcentrating, identifying, and quantifying chemical and biological substances is disclosed. An input valve directs a first volume of a sample gas to a surface acoustic wave (SAW) device. The SAW device preconcentrates and detects a mass of a substance within the sample gas. An output valve receives a second volume of the sample gas containing the preconcentrated substance from the SAW device and directs the second volume to a gas chromatograph (GC). The GC identifies the preconcentrated substance within the sample gas. A shunt valve exhausts a volume of the sample gas equal to the first volume minus the second volume away from the SAW device and the GC. The method of the present invention includes the steps of opening an input valve for passing a first volume of a sample gas to a SAW device; preconcentrating and detecting a mass of a substance within the sample gas using the SAW device; opening an output valve for passing a second volume of the sample gas containing the preconcentrated substance to a gas chromatograph (GC); and then identifying the preconcentrated substance within the sample gas using the GC.

Miniature Gas Chromatograph (GC): Penning Ionization Electron Spectroscopy (PIES) Instrument for the Trace Analyses of Extraterrestrial Environments

NASA Technical Reports Server (NTRS)

Kojiro, Daniel R.; Sheverev, Valery A.; Holland, Paul M.; Takeuchi, Norishige

2006-01-01

In situ exploration of the solar system to identify its early chemistry as preserved in icy bodies and to look for compelling evidence of astrobiology will require new technology for chemical analysis. Chemical measurements in space flight environments highlight the need for a high level of positive identification of chemical compounds, since re-measurement by alternative techniques for confirmation will not be feasible. It also may not be possible to anticipate all chemical species that are observed, and important species may be present only at trace levels where they can be masked by complex chemical backgrounds. Up to now, the only techniques providing independent sample identification of GC separated components across a wide range of chemical species have been Mass Spectrometry (MS) and Ion Mobility Spectrometry (IMS). We describe here the development of a versatile and robust miniature GC detector based on Penning Ionization Electron Spectroscopy (PIES), for use with miniature GC systems being developed for planetary missions. PIES identifies the sample molecule through spectra related to its ionization potential. The combination of miniature GC technology with the primary identification capabilities of PIES provides an analytical approach ideal for planetary analyses.

AUTOMATED ANALYSIS OF AQUEOUS SAMPLES CONTAINING PESTICIDES, ACIDIC/BASIC/NEUTRAL SEMIVOLATILES AND VOLATILE ORGANIC COMPOUNDS BY SOLID PHASE EXTRACTION COUPLED IN-LINE TO LARGE VOLUME INJECTION GC/MS

EPA Science Inventory

Data is presented on the development of a new automated system combining solid phase extraction (SPE) with GC/MS spectrometry for the single-run analysis of water samples containing a broad range of organic compounds. The system uses commercially available automated in-line 10-m...

Small molecule R1498 as a well-tolerated and orally active kinase inhibitor for hepatocellular carcinoma and gastric cancer treatment via targeting angiogenesis and mitosis pathways.

PubMed

Zhang, Chao; Wu, Xihan; Zhang, Meifang; Zhu, Liangcheng; Zhao, Rong; Xu, Danqing; Lin, Zhaohu; Liang, Chungen; Chen, Taiping; Chen, Li; Ren, Yi; Zhang, Joe; Qin, Ning; Zhang, Xiongwen

2013-01-01

Protein kinases play important roles in tumor development and progression. Lots of kinase inhibitors have entered into market and show promising clinical benefits. Here we report the discovery of a novel small molecule, well-tolerated, orally active kinase inhibitor, R1498, majorly targeting both angiogenic and mitotic pathways for the treatment of hepatocellular carcinoma (HCC) and gastric cancer (GC). A series of biochemical and cell-based assays indicated that the target kinase cluster of R1498 included Aurora kinases and VEGFR2 et al. R1498 showed moderate in vitro growth inhibition on a panel of tumor cells with IC50 of micromole range. The in vivo anti-tumor efficacy of R1498 was evaluated on a panel of GC and HCC xenografts in a parallel comparison with another multikinase inhibitor sorafenib. R1498 demonstrated superior efficacy and toxicity profile over sorafenib in all test models with >80% tumor growth inhibition and tumor regression in some xenogratfts. The therapeutic potential of R1498 was also highlighted by its efficacy on three human GC primary tumor derived xenograft models with 10-30% tumor regression rate. R1498 was shown to actively inhibit the Aurora A activity in vivo, and decrease the vascularization in tumors. Furthermore, R1498 presented good in vivo exposure and therapeutic window in the pharmacokinetic and dose range finding studies. Theses evidences indicate that R1498 is a potent, well-tolerated, orally active multitarget kinase inhibitor with a unique antiangiogenic and antiproliferative profile, and provide strong confidence for further development for HCC and GC therapy.

Packaging of Dinoroseobacter shibae DNA into Gene Transfer Agent Particles Is Not Random.

PubMed

Tomasch, Jürgen; Wang, Hui; Hall, April T K; Patzelt, Diana; Preusse, Matthias; Petersen, Jörn; Brinkmann, Henner; Bunk, Boyke; Bhuju, Sabin; Jarek, Michael; Geffers, Robert; Lang, Andrew S; Wagner-Döbler, Irene

2018-01-01

Gene transfer agents (GTAs) are phage-like particles which contain a fragment of genomic DNA of the bacterial or archaeal producer and deliver this to a recipient cell. GTA gene clusters are present in the genomes of almost all marine Rhodobacteraceae (Roseobacters) and might be important contributors to horizontal gene transfer in the world's oceans. For all organisms studied so far, no obvious evidence of sequence specificity or other nonrandom process responsible for packaging genomic DNA into GTAs has been found. Here, we show that knock-out of an autoinducer synthase gene of Dinoroseobacter shibae resulted in overproduction and release of functional GTA particles (DsGTA). Next-generation sequencing of the 4.2-kb DNA fragments isolated from DsGTAs revealed that packaging was not random. DNA from low-GC conjugative plasmids but not from high-GC chromids was excluded from packaging. Seven chromosomal regions were strongly overrepresented in DNA isolated from DsGTA. These packaging peaks lacked identifiable conserved sequence motifs that might represent recognition sites for the GTA terminase complex. Low-GC regions of the chromosome, including the origin and terminus of replication, were underrepresented in DNA isolated from DsGTAs. DNA methylation reduced packaging frequency while the level of gene expression had no influence. Chromosomal regions found to be over- and underrepresented in DsGTA-DNA were regularly spaced. We propose that a "headful" type of packaging is initiated at the sites of coverage peaks and, after linearization of the chromosomal DNA, proceeds in both directions from the initiation site. GC-content, DNA-modifications, and chromatin structure might influence at which sides GTA packaging can be initiated. © The Author(s) 2018. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

Packaging of Dinoroseobacter shibae DNA into Gene Transfer Agent Particles Is Not Random

PubMed Central

Wang, Hui; Hall, April T K; Patzelt, Diana; Preusse, Matthias; Petersen, Jörn; Brinkmann, Henner; Bunk, Boyke; Bhuju, Sabin; Jarek, Michael; Geffers, Robert; Lang, Andrew S; Wagner-Döbler, Irene

2018-01-01

Abstract Gene transfer agents (GTAs) are phage-like particles which contain a fragment of genomic DNA of the bacterial or archaeal producer and deliver this to a recipient cell. GTA gene clusters are present in the genomes of almost all marine Rhodobacteraceae (Roseobacters) and might be important contributors to horizontal gene transfer in the world’s oceans. For all organisms studied so far, no obvious evidence of sequence specificity or other nonrandom process responsible for packaging genomic DNA into GTAs has been found. Here, we show that knock-out of an autoinducer synthase gene of Dinoroseobacter shibae resulted in overproduction and release of functional GTA particles (DsGTA). Next-generation sequencing of the 4.2-kb DNA fragments isolated from DsGTAs revealed that packaging was not random. DNA from low-GC conjugative plasmids but not from high-GC chromids was excluded from packaging. Seven chromosomal regions were strongly overrepresented in DNA isolated from DsGTA. These packaging peaks lacked identifiable conserved sequence motifs that might represent recognition sites for the GTA terminase complex. Low-GC regions of the chromosome, including the origin and terminus of replication, were underrepresented in DNA isolated from DsGTAs. DNA methylation reduced packaging frequency while the level of gene expression had no influence. Chromosomal regions found to be over- and underrepresented in DsGTA-DNA were regularly spaced. We propose that a “headful” type of packaging is initiated at the sites of coverage peaks and, after linearization of the chromosomal DNA, proceeds in both directions from the initiation site. GC-content, DNA-modifications, and chromatin structure might influence at which sides GTA packaging can be initiated. PMID:29325123

Small Molecule R1498 as a Well-Tolerated and Orally Active Kinase Inhibitor for Hepatocellular Carcinoma and Gastric Cancer Treatment via Targeting Angiogenesis and Mitosis Pathways

PubMed Central

Zhang, Chao; Wu, Xihan; Zhang, Meifang; Zhu, Liangcheng; Zhao, Rong; Xu, Danqing; Lin, Zhaohu; Liang, Chungen; Chen, Taiping; Chen, Li; Ren, Yi; Zhang, Joe; Qin, Ning; Zhang, Xiongwen

2013-01-01

Protein kinases play important roles in tumor development and progression. Lots of kinase inhibitors have entered into market and show promising clinical benefits. Here we report the discovery of a novel small molecule, well-tolerated, orally active kinase inhibitor, R1498, majorly targeting both angiogenic and mitotic pathways for the treatment of hepatocellular carcinoma (HCC) and gastric cancer (GC). A series of biochemical and cell-based assays indicated that the target kinase cluster of R1498 included Aurora kinases and VEGFR2 et al. R1498 showed moderate in vitro growth inhibition on a panel of tumor cells with IC50 of micromole range. The in vivo anti-tumor efficacy of R1498 was evaluated on a panel of GC and HCC xenografts in a parallel comparison with another multikinase inhibitor sorafenib. R1498 demonstrated superior efficacy and toxicity profile over sorafenib in all test models with >80% tumor growth inhibition and tumor regression in some xenogratfts. The therapeutic potential of R1498 was also highlighted by its efficacy on three human GC primary tumor derived xenograft models with 10–30% tumor regression rate. R1498 was shown to actively inhibit the Aurora A activity in vivo, and decrease the vascularization in tumors. Furthermore, R1498 presented good in vivo exposure and therapeutic window in the pharmacokinetic and dose range finding studies. Theses evidences indicate that R1498 is a potent, well-tolerated, orally active multitarget kinase inhibitor with a unique antiangiogenic and antiproliferative profile, and provide strong confidence for further development for HCC and GC therapy. PMID:23755206

Genomic characterization of a new endophytic Streptomyces kebangsaanensis identifies biosynthetic pathway gene clusters for novel phenazine antibiotic production

PubMed Central

Remali, Juwairiah; Sarmin, Nurul ‘Izzah Mohd; Ng, Chyan Leong; Tiong, John J.L.; Aizat, Wan M.; Keong, Loke Kok

2017-01-01

Background Streptomyces are well known for their capability to produce many bioactive secondary metabolites with medical and industrial importance. Here we report a novel bioactive phenazine compound, 6-((2-hydroxy-4-methoxyphenoxy) carbonyl) phenazine-1-carboxylic acid (HCPCA) extracted from Streptomyces kebangsaanensis, an endophyte isolated from the ethnomedicinal Portulaca oleracea. Methods The HCPCA chemical structure was determined using nuclear magnetic resonance spectroscopy. We conducted whole genome sequencing for the identification of the gene cluster(s) believed to be responsible for phenazine biosynthesis in order to map its corresponding pathway, in addition to bioinformatics analysis to assess the potential of S. kebangsaanensis in producing other useful secondary metabolites. Results The S. kebangsaanensis genome comprises an 8,328,719 bp linear chromosome with high GC content (71.35%) consisting of 12 rRNA operons, 81 tRNA, and 7,558 protein coding genes. We identified 24 gene clusters involved in polyketide, nonribosomal peptide, terpene, bacteriocin, and siderophore biosynthesis, as well as a gene cluster predicted to be responsible for phenazine biosynthesis. Discussion The HCPCA phenazine structure was hypothesized to derive from the combination of two biosynthetic pathways, phenazine-1,6-dicarboxylic acid and 4-methoxybenzene-1,2-diol, originated from the shikimic acid pathway. The identification of a biosynthesis pathway gene cluster for phenazine antibiotics might facilitate future genetic engineering design of new synthetic phenazine antibiotics. Additionally, these findings confirm the potential of S. kebangsaanensis for producing various antibiotics and secondary metabolites. PMID:29201559

HIGH SPEED GC/MS FOR AIR ANALYSIS

EPA Science Inventory

A high speed GC/MS system consisting of a gas chromatograph equipped with a narrow bandwidth injection accessory and using a time-of-flight mass spectrometer detector has been adapted for analysis of ambient whole air samples which have been collected in passivated canisters. ...

The Survey of Centaurus A's Baryonic Structures (SCABS) - II. The extended globular cluster system of NGC 5128 and its nearby environment

NASA Astrophysics Data System (ADS)

Taylor, Matthew A.; Puzia, Thomas H.; Muñoz, Roberto P.; Mieske, Steffen; Lançon, Ariane; Zhang, Hongxin; Eigenthaler, Paul; Bovill, Mia Sauda

2017-08-01

New wide-field u΄g΄r΄I΄z΄ Dark Energy Camera observations centred on the nearby giant elliptical galaxy NGC 5128 covering ˜21 deg2 are used to compile a new catalogue of ˜3200 globular clusters (GCs). We report 2404 newly identified candidates, including the vast majority within ˜140 kpc of NGC 5128. We find evidence for a transition at a galactocentric radius of Rgc ≈ 55 kpc from GCs 'intrinsic' to NGC 5128 to those likely to have been accreted from dwarf galaxies or that may transition to the intragroup medium of the Centaurus A galaxy group. We fit power-law surface number density profiles of the form Σ _{N, R_gc}∝ R_gc^Γ and find that inside the transition radius, the red GCs are more centrally concentrated than the blue, with Γinner, red ≈ -1.78 and Γinner, blue ≈ -1.40, respectively. Outside this region both profiles flatten, more dramatically for the red GCs (Γouter, red ≈ -0.33) compared to the blue (Γouter, blue ≈ -0.61), although the former is more likely to suffer contamination by background sources. The median (g΄ - z΄)0 = 1.27 mag colour of the inner red population is consistent with arising from the amalgamation of two giant galaxies each less luminous than present-day NGC 5128. Both inwards and outwards of the transition radius, we find the fraction of blue GCs to dominate over the red GCs, indicating a lively history of minor mergers. Assuming the blue GCs to originate primarily in dwarf galaxies, we model the population required to explain them, while remaining consistent with NGC 5128's present-day spheroid luminosity. We find that several dozen dwarfs of luminosities Ldw, V ≃ 106-9.3 LV, ⊙, following a Schechter luminosity function with a faint-end slope of -1.50 ≲ α ≲ -1.25 is favoured, many of which may have already been disrupted in NGC 5128's tidal field.

An oxygen-vacancy-rich Z-scheme g-C3N4/Pd/TiO2 heterostructure for enhanced visible light photocatalytic performance

NASA Astrophysics Data System (ADS)

Guo, Yanru; Xiao, Limin; Zhang, Min; Li, Qiuye; Yang, Jianjun

2018-05-01

An oxygen-vacancy-rich Z-scheme g-C3N4/Pd/TiO2 ternary nanocomposite was fabricated using nanotubular titanic acid as precursors via a simple photo-deposition of Pd nanoparticles and calcination process. The prepared nanocomposites were investigated by X-ray diffraction, transmission electron microscopy, X-ray photoelectron spectroscopy, and UV-visible diffuse reflectance spectroscopy, respectively. For g-C3N4/TiO2 binary nanocomposites, at the optimal content of g-C3N4 (2%), the apparent photocatalytic activity of 2%g-C3N4/TiO2 was 9 times higher than that of pure TiO2 under visible-light illumination. After deposition of Pd (1 wt%) at the contact interface between g-C3N4 and TiO2, the 2%g-C3N4/Pd/TiO2 ternary nanocomposites demonstrated the highest visible-light-driven photocatalytic activity for the degradation of gaseous propylene, which was 16- and 2-fold higher activities than pure TiO2 and 2%g-C3N4/TiO2, respectively. The mechanism for the enhanced photocatalytic performance of the g-C3N4/Pd/TiO2 photo-catalyst is proposed to be based on the efficient separation of photo-generated electron-hole pairs through Z-scheme system, in which uniform dispersity of Pd nanoparticles at contact interface between g-C3N4 and TiO2 and oxygen vacancies promote charge separation.

Sample analysis at Mars

NASA Astrophysics Data System (ADS)

Coll, P.; Cabane, M.; Mahaffy, P. R.; Brinckerhoff, W. B.; Sam Team

The next landed missions to Mars, such as the planned Mars Science Laboratory and ExoMars, will require sample analysis capabilities refined well beyond what has been flown to date. A key science objective driving this requirement is the determination of the carbon inventory of Mars, and particularly the detection of organic compounds. The Sample Analysis at Mars (SAM) suite consists of a group of tightly-integrated experiments that would analyze samples delivered directly from a coring drill or by a facility sample processing and delivery (SPAD) mechanism. SAM consists of an advanced GC/MS system and a laser desorption mass spectrometer (LDMS). The combined capabilities of these techniques can address Mars science objectives with much improved sensitivity, resolution, and analytical breadth over what has been previously possible in situ. The GC/MS system analyzes the bulk composition (both molecular and isotopic) of solid-phase and atmospheric samples. Solid samples are introduced with a highly flexible chemical derivatization/pyrolysis subsystem (Pyr/GC/MS) that is significantly more capable than the mass spectrometers on Viking. The LDMS analyzes local elemental and molecular composition in solid samples vaporized and ionized with a pulsed laser. We will describe how each of these capabilities has particular strengths that can achieve key measurement objectives at Mars. In addition, the close codevelopment of the GC/MS and LDMS along with a sample manipulation system enables the the sharing of resources, the correlation of results, and the utilization of certain approaches that would not be possible with separate instruments. For instance, the same samples could be analyzed with more than one technique, increasing efficiency and providing cross-checks for quantification. There is also the possibility of combining methods, such as by permitting TOF-MS analyses of evolved gas (Pyr/EI-TOF-MS) or GC/MS analyses of laser evaporated gas (LD-GC/MS).

Correlation of mass spectrometry identified bacterial biomarkers from a fielded pyrolysis-gas chromatography-ion mobility spectrometry biodetector with the microbiological gram stain classification scheme.

PubMed

Snyder, A Peter; Dworzanski, Jacek P; Tripathi, Ashish; Maswadeh, Waleed M; Wick, Charles H

2004-11-01

A pyrolysis-gas chromatography-ion mobility spectrometry (Py-GC-IMS) briefcase system has been shown to detect and classify deliberately released bioaerosols in outdoor field scenarios. The bioaerosols included Gram-positive and Gram-negative bacteria, MS-2 coliphage virus, and ovalbumin protein species. However, the origin and structural identities of the pyrolysate peaks in the GC-IMS data space, their microbiological information content, and taxonomic importance with respect to biodetection have not been determined. The present work interrogates the identities of the peaks by inserting a time-of-flight mass spectrometry system in parallel with the IMS detector through a Tee connection in the GC module. Biological substances producing ion mobility peaks from the pyrolysis of microorganisms were identified by their GC retention time, matching of their electron ionization mass spectra with authentic standards, and the National Institutes for Standards and Technology mass spectral database. Strong signals from 2-pyridinecarboxamide were identified in Bacillus samples including Bacillus anthracis, and its origin was traced to the cell wall peptidoglycan macromolecule. 3-Hydroxymyristic acid is a component of lipopolysaccharides in the cell walls of Gram-negative organisms. The Gram-negative Escherichia coli organism showed significant amounts of 3-hydroxymyristic acid derivatives and degradation products in Py-GC-MS analyses. Some of the fatty acid derivatives were observed in very low abundance in the ion mobility spectra, and the higher boiling lipid species were absent. Evidence is presented that the Py-GC-ambient temperature and pressure-IMS system generates and detects bacterial biochemical information that can serve as components of a biological classification scheme directly correlated to the Gram stain reaction in microorganism taxonomy.

Two-dimensional on-line detection of brominated and iodinated volatile organic compounds by ECD and ICP-MS after GC separation.

PubMed

Schwarz, A; Heumann, K G

2002-09-01

Inductively coupled plasma-mass spectrometry (ICP-MS) was coupled to a gas chromatographic (GC) system with electron capture detector (ECD), which enables relatively easy characterization and quantification of brominated and iodinated (halogenated) volatile organic compounds (HVOCs) in aquatic and air samples. The GC-ECD system is connected in series with an ICP-MS by a directly heated transfer line and an outlet port-hole for elimination of the ECD make-up gas during ignition of the plasma. The hyphenated GC-ECD/ICP-MS system provides high selectivity and sensitivity for monitoring individual HVOCs under fast chromatographic conditions. The ECD is most sensitive for the detection of chlorinated and brominated but the ICP-MS for iodinated compounds. The greatest advantage of the use of an ICP-MS is its element-specific detection, which allows clear identification of compounds in most cases. The absolute detection limits for ICP-MS are 0.5 pg for iodinated, 10 pg for brominated, and 50 pg for chlorinated HVOCs with the additional advantage that calibration is almost independent on different compounds of the same halogen. In contrast to that detection limits for ECD vary for the different halogenated compounds and lie in the range of 0.03-11 pg. The two-dimensional GC-ECD/ICP-MS instrumentation is compared with electron impact mass spectrometry (EI-MS) and microwave induced plasma atomic emission detection (MIP-AED). Even if EI-MS has additional power in identifying unknown peaks by its scan mode, the detection limits are much higher compared with GC-ECD/ICP-MS, whereas the selective ion monitoring mode (SIM) reaches similar detection limits. The MIP-AED detection limits are at the same level as EI-MS in the scan mode.

Effect of aminophylline on hindlimb blood flow autoregulation during increased metabolism in dogs.

PubMed

Metting, P J; Weldy, D L; Ronau, T F; Britton, S L

1986-06-01

The contribution of adenosine to hindlimb blood flow autoregulation during treadmill exercise or the administration of 2,4-dinitrophenol (DNP) was evaluated in 9 conscious dogs by determining hindlimb vascular bed pressure-flow relationships in the presence and absence of the adenosine receptor site antagonist, aminophylline. Hindlimb pressure-flow relationships were obtained by measuring blood flow during stepwise reductions in perfusion pressure produced with an occlusion cuff located distal to a flow probe on the external iliac artery. The efficiency of autoregulation was quantitated by calculating the closed-loop gain of flow regulation (Gc) at each pressure decrement utilizing the equation Gc = 1 - (% delta flow/% delta pressure). A Gc of one represents perfect autoregulation of flow, and a Gc of zero is indicative of a rigid system. During exercise, Gc averaged 0.44 +/- 0.07. Aminophylline reduced the Gc during exercise to -0.07 +/- 0.06 (P less than 0.05). During DNP administration, Gc averaged 0.54 +/- 0.09 and declined to -0.09 +/- 0.10 in the presence of aminophylline (P less than 0.05). These results support the hypothesis that adenosine is a primary mediator of hindlimb blood flow autoregulation during conditions that increase hindlimb metabolism.

Endogenous molecular network reveals two mechanisms of heterogeneity within gastric cancer.

PubMed

Li, Site; Zhu, Xiaomei; Liu, Bingya; Wang, Gaowei; Ao, Ping

2015-05-30

Intratumor heterogeneity is a common phenomenon and impedes cancer therapy and research. Gastric cancer (GC) cells have generally been classified into two heterogeneous cellular phenotypes, the gastric and intestinal types, yet the mechanisms of maintaining two phenotypes and controlling phenotypic transition are largely unknown. A qualitative systematic framework, the endogenous molecular network hypothesis, has recently been proposed to understand cancer genesis and progression. Here, a minimal network corresponding to such framework was found for GC and was quantified via a stochastic nonlinear dynamical system. We then further extended the framework to address the important question of intratumor heterogeneity quantitatively. The working network characterized main known features of normal gastric epithelial and GC cell phenotypes. Our results demonstrated that four positive feedback loops in the network are critical for GC cell phenotypes. Moreover, two mechanisms that contribute to GC cell heterogeneity were identified: particular positive feedback loops are responsible for the maintenance of intestinal and gastric phenotypes; GC cell progression routes that were revealed by the dynamical behaviors of individual key components are heterogeneous. In this work, we constructed an endogenous molecular network of GC that can be expanded in the future and would broaden the known mechanisms of intratumor heterogeneity.

Endogenous molecular network reveals two mechanisms of heterogeneity within gastric cancer

PubMed Central

Li, Site; Zhu, Xiaomei; Liu, Bingya; Wang, Gaowei; Ao, Ping

2015-01-01

Intratumor heterogeneity is a common phenomenon and impedes cancer therapy and research. Gastric cancer (GC) cells have generally been classified into two heterogeneous cellular phenotypes, the gastric and intestinal types, yet the mechanisms of maintaining two phenotypes and controlling phenotypic transition are largely unknown. A qualitative systematic framework, the endogenous molecular network hypothesis, has recently been proposed to understand cancer genesis and progression. Here, a minimal network corresponding to such framework was found for GC and was quantified via a stochastic nonlinear dynamical system. We then further extended the framework to address the important question of intratumor heterogeneity quantitatively. The working network characterized main known features of normal gastric epithelial and GC cell phenotypes. Our results demonstrated that four positive feedback loops in the network are critical for GC cell phenotypes. Moreover, two mechanisms that contribute to GC cell heterogeneity were identified: particular positive feedback loops are responsible for the maintenance of intestinal and gastric phenotypes; GC cell progression routes that were revealed by the dynamical behaviors of individual key components are heterogeneous. In this work, we constructed an endogenous molecular network of GC that can be expanded in the future and would broaden the known mechanisms of intratumor heterogeneity. PMID:25962957

Genomics of Staphylococcus

NASA Astrophysics Data System (ADS)

Lindsay, Jodi A.

The staphylococci are Gram-positive cocci that divide to form clusters that look like grapes. By 16S ribosomal sequencing, they are most closely related to the Gram-positive, low G+C content Bacillus-Lactobacillus-Staphylococcus genera (Woese, 1987). There are over 30 species of staphylococci identified, and they are typically found on the skin and mucous membranes of mammals. About a dozen species are frequently carried on humans, including Staphylococcus aureus, Staphylococcus epidermidis, Staphylococcus haemolyticus, Staphylococcus capitis, Staphylococcus hominis, Staphylococcus cohnii, Staphylococcus lugdunensis, Staphylococcus schleiferi, Staphylococcus saprophyticus, Staphylococcus simulans, Staphylococcus warneri and Staphylococcus xylosus.

Differential Distribution of Type II CRISPR-Cas Systems in Agricultural and Nonagricultural Campylobacter coli and Campylobacter jejuni Isolates Correlates with Lack of Shared Environments.

PubMed

Pearson, Bruce M; Louwen, Rogier; van Baarlen, Peter; van Vliet, Arnoud H M

2015-09-02

CRISPR (clustered regularly interspaced palindromic repeats)-Cas (CRISPR-associated) systems are sequence-specific adaptive defenses against phages and plasmids which are widespread in prokaryotes. Here we have studied whether phylogenetic relatedness or sharing of environmental niches affects the distribution and dissemination of Type II CRISPR-Cas systems, first in 132 bacterial genomes from 15 phylogenetic classes, ranging from Proteobacteria to Actinobacteria. There was clustering of distinct Type II CRISPR-Cas systems in phylogenetically distinct genera with varying G+C%, which share environmental niches. The distribution of CRISPR-Cas within a genus was studied using a large collection of genome sequences of the closely related Campylobacter species Campylobacter jejuni (N = 3,746) and Campylobacter coli (N = 486). The Cas gene cas9 and CRISPR-repeat are almost universally present in C. jejuni genomes (98.0% positive) but relatively rare in C. coli genomes (9.6% positive). Campylobacter jejuni and agricultural C. coli isolates share the C. jejuni CRISPR-Cas system, which is closely related to, but distinct from the C. coli CRISPR-Cas system found in C. coli isolates from nonagricultural sources. Analysis of the genomic position of CRISPR-Cas insertion suggests that the C. jejuni-type CRISPR-Cas has been transferred to agricultural C. coli. Conversely, the absence of the C. coli-type CRISPR-Cas in agricultural C. coli isolates may be due to these isolates not sharing the same environmental niche, and may be affected by farm hygiene and biosecurity practices in the agricultural sector. Finally, many CRISPR spacer alleles were linked with specific multilocus sequence types, suggesting that these can assist molecular epidemiology applications for C. jejuni and C. coli. © The Author(s) 2015. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

Electrochemical sensing and biosensing platform based on chemically reduced graphene oxide.

PubMed

Zhou, Ming; Zhai, Yueming; Dong, Shaojun

2009-07-15

In this paper, the characterization and application of a chemically reduced graphene oxide modified glassy carbon (CR-GO/GC) electrode, a novel electrode system, for the preparation of electrochemical sensing and biosensing platform are proposed. Different kinds of important inorganic and organic electroactive compounds (i.e., probe molecule (potassium ferricyanide), free bases of DNA (guanine (G), adenine (A), thymine (T), and cytosine (C)), oxidase/dehydrogenase-related molecules (hydrogen peroxide (H2O2)/beta-nicotinamide adenine dinucleotide (NADH)), neurotransmitters (dopamine (DA)), and other biological molecules (ascorbic acid (AA), uric acid (UA), and acetaminophen (APAP)) were employed to study their electrochemical responses at the CR-GO/GC electrode, which shows more favorable electron transfer kinetics than graphite modified glassy carbon (graphite/GC) and glassy carbon (GC) electrodes. The greatly enhanced electrochemical reactivity of the four free bases of DNA at the CR-GO/GC electrode compared with that at graphite/GC and GC electrodes makes the CR-GO/GC electrode a better choice for the electrochemical biosensing of four DNA bases in both the single-stranded DNA (ssDNA) and double-stranded DNA (dsDNA) at physiological pH without a prehydrolysis step. This allows us to detect a single-nucleotide polymorphism (SNP) site for short oligomers with a particular sequence at the CR-GO/GC electrode without any hybridization or labeling processes in this work, suggesting the potential applications of CR-GO in the label-free electrochemical detection of DNA hybridization or DNA damage for further research. Based on the greatly enhanced electrochemical reactivity of H2O2 and NADH at the CR-GO/GC electrode, CR-GO/GC electrode-based bioelectrodes (in connection with glucose oxidase (GOD) and alcohol dehydrogenase (ADH)) show a better analytical performance for the detection of glucose and ethanol compared with graphite/GC- or GC-based bioelectrodes. By comparing the electrochemical performance of CR-GO with that of the conventional graphite and GC, we reveal that CR-GO with the nature of a single sheet showing favorable electrochemical activity should be a kind of more robust and advanced carbon electrode material which may hold great promise for electrochemical sensors and biosensors design.

Questioning the role of actinfree Gc-Globulin as actin scavenger in neurodegenerative central nervous system disease: relationship to S-100B levels and blood-brain barrier function.

PubMed

Gressner, Olav A; Schifflers, Marie-Claire; Kim, Philipp; Heuts, Leo; Lahme, Birgit; Gressner, Axel M

2009-02-01

Preliminary studies report on significantly higher levels of the major cytoskeleton protein actin in CSF of patients with neurodegenerative conditions and that the dynamics of these levels obviously correlates with disease progression and clinical disability. One of the primary functions of actinfree Gc-Globulin is to bind and neutralize extracellular monomeric actin, released into the circulation by necrotic or ruptured cells, and thus ameliorating the clinical outcome in situations of severe organ damage. This is the first study to investigate actinfree Gc-Globulin and S100-B levels (as reliable marker of neurodegeneration) in paired CSF and serum samples of patients with multietiological CNS diseases. 42% of all patients with CNS disease displayed serum concentrations of actinfree Gc-Globulin above the established reference range. CSF concentrations of actinfree Gc-Globulin and S100-B were positively correlated with the severity of blood-brain barrier (BBB) dysfunction. Furthermore, patients with severe BBB dysfunction presented a higher percentage of intrathecal synthesis of actinfree Gc-Globulin compared to patients with mild to moderate dysfunction and to patients with normal BBB function. Representative longitudinal data from selected patients demonstrated an inverse behaviour of actinfree Gc-Globulin and S100-B CSF concentrations, suggesting a consumption of the actin scavenger capacity of Gc-Globulin in times of increased neuronal damage. This presumption was supported by the fact that those conditions associated with a severe neuronal damage, in particular CNS trauma, and highest S100-B concentrations simultaneously displayed lowest actinfree Gc-Globulin levels, and thus residual actin binding capacity of Gc-Globulin. In summary, our data propose a function of actinfree Gc-Globulin also in the clearance of actin filaments from CSF of patients with neuronal damage. However, active recruitment of hepatic derived actinfree Gc-Globulin to the site of CNS injury is not observed. Much more, BBB leakage enables extraneuronally synthesized actinfree Gc-Globulin to extent its scavenger capacity for actin also to the subarachnoidal space. Furthermore, intrathecal synthesis of actinfree Gc-Globulin seems to be increased in patients with severe neurodegeneration.

Development of High Precision Metal Micro-Electro-Mechanical-Systems Column for Portable Surface Acoustic Wave Gas Chromatograph

NASA Astrophysics Data System (ADS)

Iwaya, Takamitsu; Akao, Shingo; Sakamoto, Toshihiro; Tsuji, Toshihiro; Nakaso, Noritaka; Yamanaka, Kazushi

2012-07-01

In the field of environmental measurement and security, a portable gas chromatograph (GC) is required for the on-site analysis of multiple hazardous gases. Although the gas separation column has been downsized using micro-electro-mechanical-systems (MEMS) technology, an MEMS column made of silicon and glass still does not have sufficient robustness and a sufficiently low fabrication cost for a portable GC. In this study, we fabricated a robust and inexpensive high-precision metal MEMS column by combining diffusion-bonded etched stainless-steel plates with alignment evaluation using acoustic microscopy. The separation performance was evaluated using a desktop GC with a flame ionization detector and we achieved the high separation performance comparable to the best silicon MEMS column fabricated using a dynamic coating method. As an application, we fabricated a palm-size surface acoustic wave (SAW) GC combining this column with a ball SAW sensor and succeeded in separating and detecting a mixture of volatile organic compounds.

Characterizing photosynthesis and transpiration of plant communities in controlled environments

NASA Technical Reports Server (NTRS)

Monje, O.; Bugbee, B.

1996-01-01

CO2 and water vapor fluxes of hydroponically grown wheat and soybean canopies were measured continuously in several environments with an open gas exchange system. Canopy CO2 fluxes reflect the photosynthetic efficiency of a plant community, and provide a record of plant growth and health. There were significant diurnal fluctuations in root and shoot CO2 fluxes, and in shoot water vapor fluxes. Canopy stomatal conductance (Gc) to water vapor was calculated from simultaneous measurements of canopy temperature (Tcan) and transpiration rates (Tr). Tr in the dark was substantial, and there were large diurnal fluctuations in both Gc and Tr. Canopy net Photosynthesis (Pnet), Tr, and Gc increased with increasing net radiation. Gc increased with Tr, suggesting that the stomata of plants in controlled environments (CEs) behave differently from field-grown plants. A transpiration model based on measurements of Gc was developed for CEs. The model accurately predicted Tr from a soybean canopy.

Contaminant Mass Transfer During Boiling in Fractured Geologic Media

DTIC Science & Technology

2011-04-01

on GC-ECD. Bromide was measured on a Dionex AS50 ion chromatography system equipped with a CD25 conductivity detector and a Dionex guard column...EDB Dibromethane EPICS Equilibrium Partitioning In Closed Systems FID Flame Ionized Detector GC Gas Chromatography IC Ion Chromatography ...International). Bromide was measured from filtered samples with a Dionex ion chromatograph (IC) with an AS11/AG11 column. The eluant for bromide

Natriuretic Peptide Receptor Guanylyl Cyclase-A Protects Podocytes from Aldosterone-Induced Glomerular Injury

PubMed Central

Ogawa, Yoshihisa; Yokoi, Hideki; Kasahara, Masato; Mori, Kiyoshi; Kato, Yukiko; Kuwabara, Takashige; Imamaki, Hirotaka; Kawanishi, Tomoko; Koga, Kenichi; Ishii, Akira; Tokudome, Takeshi; Kishimoto, Ichiro; Sugawara, Akira; Nakao, Kazuwa

2012-01-01

Natriuretic peptides produced by the heart in response to cardiac overload exert cardioprotective and renoprotective effects by eliciting natriuresis, reducing BP, and inhibiting cell proliferation and fibrosis. These peptides also antagonize the renin-angiotensin-aldosterone system, but whether this mechanism contributes to their renoprotective effect is unknown. Here, we examined the kidneys of mice lacking the guanylyl cyclase-A (GC-A) receptor for natriuretic peptides under conditions of high aldosterone and high dietary salt. After 4 weeks of administering aldosterone and a high-salt diet, GC-A knockout mice, but not wild-type mice, exhibited accelerated hypertension with massive proteinuria. Aldosterone-infused GC-A knockout mice had marked mesangial expansion, segmental sclerosis, severe podocyte injury, and increased oxidative stress. Reducing the BP with hydralazine failed to lessen such changes; in contrast, blockade of the renin-angiotensin-aldosterone system markedly reduced albuminuria, ameliorated podocyte injury, and reduced oxidative stress. Furthermore, treatment with the antioxidant tempol significantly reduced albuminuria and abrogated the histologic changes. In cultured podocytes, natriuretic peptides inhibited aldosterone-induced mitogen-activated protein kinase phosphorylation. Taken together, these results suggest that renoprotective properties of the endogenous natriuretic peptide/GC-A system may result from the local inhibition of the renin-angiotensin-aldosterone system and oxidative stress in podocytes. PMID:22652704

1,25D3 enhances antitumor activity of gemcitabine and cisplatin in human bladder cancer models

PubMed Central

Ma, Yingyu; Yu, Wei-Dong; Trump, Donald L.; Johnson, Candace S.

2010-01-01

Background 1,25 dihydroxyvitamin D3 (1,25D3) potentiates the cytotoxic effects of several common chemotherapeutic agents. The combination of gemcitabine and cisplatin (GC) is a current standard chemotherapy regimen for bladder cancer. We investigated whether 1,25D3 could enhance the antitumor activity of GC in bladder cancer model systems. Methods Human bladder cancer T24 and UMUC3 cells were pretreated with 1,25D3 followed by GC. Apoptosis were assessed by annexin V staining. Caspase activation was examined by immunoblot analysis and substrate-based caspase activity assay. The cytotoxic effects were examined using MTT and in vitro clonogenic assay. p73 protein levels were assessed by immunoblot analysis. Knockdown of p73 was achieved by siRNA. The in vivo antitumor activity was assessed by in vivo excision clonogenic assay and tumor regrowth delay in the T24 xenograft model. Results 1,25D3 pretreatment enhanced GC-induced apoptosis and the activities of caspases- 8, 9 and 3 in T24 and UMUC3 cells. 1,25D3 synergistically reduced GC-suppressed surviving fraction in T24 cells. 1,25D3, gemcitabine, or cisplatin induced p73 accumulation, which was enhanced by GC or 1,25D3 and GC. p73 expression was lower in human primary bladder tumor tissue compared with adjacent normal tissue. Knockdown of p73 increased clonogenic capacity of T24 cells treated with 1,25D3, GC or 1,25D3 and GC. 1,25D3 and GC combination enhanced tumor regression compared with 1,25D3 or GC alone. Conclusions 1,25D3 potentiates GC-mediated growth inhibition in human bladder cancer models in vitro and in vivo, which involves p73 induction and apoptosis. PMID:20564622

Using BPCA and pyrolysis-GC/MS patterns as a measure of charring intensity

NASA Astrophysics Data System (ADS)

Kaal, Joeri; Schneider, Maximilian P. W.; Schmidt, Michael W. I.

2010-05-01

Many questions remain on the molecular properties of Black C (organic fire residues such as charcoal and soot). Here we compare parameters from two methods that have recently shown to be related to the degree of thermal modification ("charring intensity") of charcoal-Black C: i) the proportion of mellitic acid (B6CA) among benzenepolycarboxylic acids in the BPCA method [1,2,3] and ii) the relative proportions and degree of alkylation of pyrolysis products from Black C in pyrolysis-GC/MS [4]. For that purpose we used laboratory chars from rice straw (grass) and chestnut wood (wood) produced at 200-1000 °C under N2 flow. The chars obtained at 450 °C are reference materials of the Black Carbon Ring Trial [5]. Positive correlations between the charring temperature and BPCA and pyrolysis patterns confirm that these methods can be used to study the degree of thermal impact of charred remains. Pyrolysis-GC/MS allowed us to track the thermal degradation of the major biocomponents lignin, polysaccharides, tannin, aliphatic chain lipids, triterpenoids, chlorophyll and proteins, mostly between 250 and 450 °C. The proportions of the pyrolysis products of Black C (benzene, toluene, benzonitrile, PAHs, etc.) and also the ratios that reflect the abundance of aliphatic cross-linkages between aromatic moieties (benzene/toluene, naphthalene/alkylnaphthalenes, benzofuran/alkylbenzofurans), increase with charring intensity. Nonetheless, chars obtained at T > 600 °C (especially for wood) gave low quality pyrograms and poor reproducibility because of high thermal stability. The relative contributions of B6CA, one of the molecular markers used for the BPCA method, are indicative for the degree of condensation of the chars. The BPCA approach showed a clear increase in the relative contribution of B6CA from ca. 5 % at 200 °C to ca. 95 % at 1000 °C, confirming the ability of this parameter to assess charring intensity. The relative contribution of B6CA remains almost constant at ca. 30 % between 250 and 450 °C. Thus, with regard to estimating the charring intensity of Black C, the BPCA method is more suitable for high T chars (> 450 °C) while pyrolysis-GC/MS seems more appropriate in the lower T range (< 500 °C). This is not surprising as larger clusters of polyaromatic domains (high T) can be assessed by the BPCA method but are resistant against pyrolysis. On the other hand, smaller clusters and non-polycondensed portions of Black C (low T) are amenable to pyrolysis-GC/MS but escape the analytical window of the BPCA method. The two methods may therefore be considered complementary, with BPCA giving reliable quantitative data on Black C content and charring degree of high T chars while pyrolysis-GC/MS is quantitatively weak but provides highly detailed information on the molecular properties of especially lower T chars. References [1] Brodowski, S., Rodionov, A., Haumeier L., Glaser, B., Amelung, W. (2005) Org. Geochem. 36, 1299-1310. [2] Glaser, B., Haumeier, L., Guggenberger, G., Zech, W. (1998) Org. Geochem. 29, 811-819. [3] Schneider, M.P.W., Hilf, M., Vogt, U.F., Schmidt, M.W.I., Org. Geochem. (submitted) [4] Kaal, J., Rumpel, C. (2009) Org. Geochem. 40, 1179-1187. [5] Hammes, K., Schmidt, M.W.I., Smernik, R.J. et al. (2007) Global Biogeochemical Cycles 21, 1-18.

Method development for mass spectrometry based molecular characterization of fossil fuels and biological samples

NASA Astrophysics Data System (ADS)

Mahat, Rajendra K.

In an analytical (chemical) method development process, the sample preparation step usually determines the throughput and overall success of the analysis. Both targeted and non-targeted methods were developed for the mass spectrometry (MS) based analyses of fossil fuels (coal) and lipidomic analyses of a unique micro-organism, Gemmata obscuriglobus. In the non-targeted coal analysis using GC-MS, a microwave-assisted pressurized sample extraction method was compared with the traditional extraction method, such as Soxhlet. On the other hand, methods were developed to establish a comprehensive lipidomic profile and to confirm the presence of endotoxins (a.k.a. lipopolysaccharides, LPS) in Gemmata.. The performance of pressurized heating techniques employing hot-air oven and microwave irradiation were compared with that of Soxhlet method in terms of percentage extraction efficiency and extracted analyte profiles (via GC-MS). Sub-bituminous (Powder River Range, Wyoming, USA) and bituminous (Fruitland formation, Colorado, USA) coal samples were tested. Overall 30-40% higher extraction efficiencies (by weight) were obtained with a 4 hour hot-air oven and a 20 min microwave-heating extraction in a pressurized container when compared to a 72 hour Soxhlet extraction. The pressurized methods are 25 times more economic in terms of solvent/sample amount used and are 216 times faster in term of time invested for the extraction process. Additionally, same sets of compounds were identified by GC-MS for all the extraction methods used: n-alkanes and diterpanes in the sub-bituminous sample, and n-alkanes and alkyl aromatic compounds in the bituminous coal sample. G. obscuriglobus, a nucleated bacterium, is a micro-organism of high significances from evolutionary, cell and environmental biology standpoints. Although lipidomics is an essential tool in microbiological systematics and chemotaxonomy, complete lipid profile of this bacterium is still lacking. In addition, the presence of LPS and thus outer membrane (OM) in Gemmata is unknown. Global lipidomic analysis of G. obscuriglobus showed fatty acids (FAs) in the range C14 - C22, with octadecanoic and cis-9 hexadecenoic acids (C18:0 and ωc9 C16:1) being the two most abundant FAs. Thirteen different Gram-negative specific 3-hydroxy fatty acids (3-HOFAs) and eukaryote specific sterols (C30; four in number) were identified. Additionally, like a eukaryotic cell, a polyunsaturated fatty acid (PUFA; tent. ω3 C27:3) has also been discovered. The targeted lipidomic study found a series of novel biomarkers in G. obscuriglobus. Compositional analysis of LPS confirmed eight different 3-HOFAs and a sugar-acid, 2-keto 3-deoxy-D-manno -octulosonic acid (Kdo). These two groups of compounds, being unique to a Gram-negative LPS, confirmed the presence of OM in G. obscuriglobus. Moreover, compositional analyses by GC-MS also confirmed glucosamine and hexose and heptose sugars in the LPS. These compositional information obtained from GC-MS analyses were combined with molecular/structural information collected from Matrix-assisted laser desorption and ionization-time of flight (MALDI-TOF) MS. The MALDI-TOF MS showed a cluster of ions separated by 14 u, from m/z 2017.16 to 2143.28. For the most intense ion at m/z 2087.22, a tentative hexa-acylated lipid A structure has been proposed. Identifications of multiple 3-HOFAs by GC-MS and a cluster of ions in MALDI suggest presence of multiple lipid A species, i.e., heterogeneous lipid A molecule, in G. obscuriglobus..

Multiple Stellar Populations of Globular Clusters from Homogeneous Ca-CN Photometry. II. M5 (NGC 5904) and a New Filter System

NASA Astrophysics Data System (ADS)

Lee, Jae-Woo

2017-07-01

Using our ingeniously designed new filter systems, we investigate multiple stellar populations of the red giant branch (RGB) and the asymptotic giant branch (AGB) in the globular cluster (GC) M5. Our results are the following. (1) Our {{cn}}{JWL} index accurately traces nitrogen abundances in M5, while other color indices fail to do so. (2) We find bimodal CN distributions in both RGB and AGB sequences, with number ratios between CN-weak (CN-w) and CN-strong (CN-s) of n(CN-w):n(CN-s) = 29:71 (±2) and 21:79 (±7), respectively. (3) We also find a bimodal photometric [N/Fe] distribution for M5 RGB stars. (4) Our {{cn}}{JWL}-[O/Fe] and {{cn}}{JWL}-[Na/Fe] relations show clear discontinuities between the two RGB populations. (5) Although small, the RGB bump of CN-s is slightly brighter, {{Δ }}{V}{bump} = 0.07 ± 0.04 mag. If real, the difference in the helium abundance becomes {{Δ }}Y = 0.028 ± 0.016, in the sense that CN-s is more helium enhanced. (6) Very similar radial but different spatial distributions with comparable center positions are found for the two RGB populations. The CN-s RGB and AGB stars are more elongated along the NW-SE direction. (7) The CN-s population shows a substantial net projected rotation, while that of the CN-w population is nil. (8) Our results confirm the deficiency of CN-w AGB stars previously noted by others. We show that it is most likely due to stochastic truncation in the outer part of the cluster. Finally, we discuss the formation scenario of M5. Based on observations made with the Cerro Tololo Inter-American Observatory (CTIO) 1 m telescope, which is operated by the SMARTS consortium.

Revealing the Effects of the Herbal Pair of Euphorbia kansui and Glycyrrhiza on Hepatocellular Carcinoma Ascites with Integrating Network Target Analysis and Experimental Validation

PubMed Central

Zhang, Yanqiong; Lin, Ya; Zhao, Haiyu; Guo, Qiuyan; Yan, Chen; Lin, Na

2016-01-01

Although the herbal pair of Euphorbia kansui (GS) and Glycyrrhiza (GC) is one of the so-called "eighteen antagonistic medicaments" in Chinese medicinal literature, it is prescribed in a classic Traditional Chinese Medicine (TCM) formula Gansui-Banxia-Tang for cancerous ascites, suggesting that GS and GC may exhibit synergistic or antagonistic effects in different combination designs. Here, we modeled the effects of GS/GC combination with a target interaction network and clarified the associations between the network topologies involving the drug targets and the drug combination effects. Moreover, the "edge-betweenness" values, which is defined as the frequency with which edges are placed on the shortest paths between all pairs of modules in network, were calculated, and the ADRB1-PIK3CG interaction exhibited the greatest edge-betweenness value, suggesting its crucial role in connecting the other edges in the network. Because ADRB1 and PIK3CG were putative targets of GS and GC, respectively, and both had functional interactions with AVPR2 approved as known therapeutic target for ascites, we proposed that the ADRB1-PIK3CG-AVPR2 signal axis might be involved in the effects of the GS-GC combination on ascites. This proposal was further experimentally validated in a H22 hepatocellular carcinoma (HCC) ascites model. Collectively, this systems-level investigation integrated drug target prediction and network analysis to reveal the combination principles of the herbal pair of GS and GC. Experimental validation in an in vivo system provided convincing evidence that different combination designs of GS and GC might result in synergistic or antagonistic effects on HCC ascites that might be partially related to their regulation of the ADRB1-PIK3CG-AVPR2 signal axis. PMID:27143956

Nailfold videocapillaroscopy micro-haemorrhage and giant capillary counting as an accurate approach for a steady state definition of disease activity in systemic sclerosis.

PubMed

Sambataro, Domenico; Sambataro, Gianluca; Zaccara, Eleonora; Maglione, Wanda; Polosa, Riccardo; Afeltra, Antonella M V; Vitali, Claudio; Del Papa, Nicoletta

2014-10-09

Nailfold videocapillaroscopy (NVC) in systemic sclerosis (SSc) is a procedure commonly used for patient classification and subsetting, but not to define disease activity (DA). This study aimed to evaluate whether the number of micro-haemorrhages (MHE), micro-thrombosis (MT), giant capillaries (GC), and normal/dilated capillaries (Cs) in NVC could predict DA in SSc. Eight-finger NVC was performed in 107 patients with SSc, and the total number of MHE/MT, GC, and the mean number of Cs were counted and defined as number of micro-haemorrhages (NEMO), GC and Cs scores, respectively. The European Scleroderma Study Group (ESSG) index constituted the gold standard for DA assessment, and scores ≥ 3.5 and = 3 were considered indicative of high and moderate activity, respectively. NEMO and GC scores were positively correlated with ESSG index (R = 0.65, P < 0.0001, and R = 0.47, P <0.0001, respectively), whilst Cs score showed a negative correlation with that DA index (R = -0.30, P <0.001). The area under the curve (AUC) of receiver operating characteristic plots, obtained by NEMO score sensitivity and specificity values in classifying patients with ESSG index ≥ 3.5, was significantly higher than the corresponding AUC derived from either GC or Cs scores (P <0.03 and P <0.0006, respectively). A modified score, defined by the presence of a given number of MHE/MT and GC, had a good performance in classifying active patients (ESSG index ≥ 3, sensitivity 95.1%, specificity 84.8%, accuracy 88.7%). MHE/MT and GC appear to be good indicators of DA in SSc, and enhances the role of NVC as an easy technique to identify active patients.

Relationship between miR-146a rs2910164 (G>C) Polymorphism and Digestive System Cancer Susceptibility: A Meta-Analysis.

PubMed

Xiong, Xin; Yan, Junfeng; Li, Linghua; Li, Yun; Cao, Yi; Tu, Yi; Mei, Jinhong

2017-08-01

MicroRNAs (miRNAs) are identified negatively regulating gene expression and acting as oncogenes or tumor suppressors in tumorigenesis. The association between miR-146a rs2910164 (G>C) polymorphism and susceptibility to digestive system cancers was contradictory and inconsistent in previously published studies. Presently, we performed a comprehensive literature retrieve on PubMed, Web of Science, Embase, Wanfang and CNKI databases to identify all relevant studies published before July 30, 2016. Odds ratio (OR) and 95% confidential interval (95%CI) were used to calculate the relationship between miR-146a rs2910164 (G>C) polymorphism and digestive system cancers susceptibility. Finally, a total of 45 publications comprising 47 separate case-control studies were enrolled in the present updated meta-analysis including 20,281 cases and 26,099 controls. However, no significant association was uncovered for miR-146a rs2910164 polymorphism and digestive system cancers susceptibility in all the genetic models. Moreover, in the stratification analyses by cancer type, the source of control, ethnicity and Hardy-Weinberg Equilibrium (HWE) status, we also revealed a negative result. To conclude, our work suggests that miR-146a rs2910164 (G>C) polymorphism is not a susceptibility factor for digestive system cancers. © 2017 by the Association of Clinical Scientists, Inc.

Regolith and Environment Science and Oxygen and Lunar Volatile Extraction (RESOLVE): Lunar Advanced Volatile Analysis (LAVA) Capillary Fluid Dynamic Restriction Effects on Gas Chromatography

NASA Technical Reports Server (NTRS)

Gonzalez, Marianne; Quinn, Jacqueline; Captain, Janine; Santiago-Bond, Josephine; Starr, Stanley

2015-01-01

The Resource Prospector (RP) mission with the Regolith and Environment Science and Oxygen Lunar Volatile Extraction (RESOLVE) payload aims to show the presence of water in lunar regolith, and establish a proving ground for NASAs mission to Mars. One of the analysis is performed by the Lunar Advanced Volatiles Analysis (LAVA) subsystem, which consists of a fluid network that facilitates the transport of volatile samples to a gas chromatograph and mass spectrometer (GC-MS) instrument. The understanding of fluid dynamics directed from the GC to the MS is important due to the influence of flow rates and pressures that affect the accuracy of and prevent the damage to the overall GC-MS instrument. The micro-scale capillary fluid network within the GC alone has various lengths and inner-diameters; therefore, determination of pressure differentials and flow rates are difficult to model computationally, with additional complexity from the vacuum conditions in space and lack of a lunar atmosphere. A series of tests were performed on an experimental set-up of the system where the inner diameters of the GC transfer line connecting to the MS were varied. The effect on chromatography readings were also studied by applying these lines onto a GC instrument. It was found that a smaller inner diameter transfer line resulted in a lower flow rate, as well as a lower pressure differential across the thermal conductivity detector (TCD) unit of the GC and a negligible pressure drop across the mock-up capillary column. The chromatography was affected with longer retention times and broader peak integrations. It was concluded that a 0.050 mm inner diameter line still proved most suitable for the systems flow rate preferences. In addition, it was evident that this small transfer line portrayed some expense to GC signal characteristics and the wait time for steady-state operation.

Electrochemical sensing platform based on the highly ordered mesoporous carbon-fullerene system.

PubMed

Zhou, Ming; Guo, Jidong; Guo, Li-ping; Bai, Jing

2008-06-15

In this paper, we report a novel all-carbon two-dimensionally ordered nanocomposite electrode system on the basis of the consideration of host-guest chemistry, which utilizes synergistic interactions between a nanostructured matrix of ordered mesoporous carbon (OMC) and an excellent electron acceptor of nanosized fullerene (C 60) to facilitate heterogeneous electron-transfer processes. The integration of OMC-C 60 by covalent interaction, especially its electrochemical applications for electrocatalysis, has not been explored thus far. Such integration may even appear to be counterintuitive because OMC and C 60 provide opposite electrochemical benefits in terms of facilitating heterogeneous electron-transfer processes. Nevertheless, the present work demonstrates the integration of OMC and C 60 can provide a remarkable synergistic augmentation of the current. To illuminate the concept, eight kinds of inorganic and organic electroactive compounds were employed to study the electrochemical response at an OMC-C 60 modified glassy carbon (OMC-C 60/GC) electrode for the first time, which shows more favorable electron-transfer kinetics than OMC/GC, carbon nanotube modified GC, C 60/GC, and GC electrodes. Such electrocatalytic behavior at OMC-C 60/GC electrode could be attributed to the unique physicochemical properties of OMC and C 60, especially the unusual host-guest synergy of OMC-C 60, which induced a substantial decrease in the overvoltage for NADH oxidation compared with GC electrode. The ability of OMC-C 60 to promote electron transfer not only suggests a new platform for the development of dehydrogenase-based bioelectrochemical devices but also indicates a potential of OMC-C 60 to be of a wide range of sensing applications because the electrocatalysis of different electroactive compounds at the OMC-C 60/GC electrode in this work should be a good model for constructing a novel and promising electrochemical sensing platform for further electrochemical detection of other biomolecules.

Localization and expression of molt-inhibiting hormone and nitric oxide synthase in the central nervous system of the green shore crab, Carcinus maenas, and the blackback land crab, Gecarcinus lateralis.

PubMed

Pitts, Natalie L; Mykles, Donald L

2017-01-01

In decapod crustaceans, molting is controlled by the pulsatile release of molt-inhibiting hormone (MIH) from neurosecretory cells in the X-organ/sinus gland (XO/SG) complex in the eyestalk ganglia (ESG). A drop in MIH release triggers molting by activating the molting gland or Y-organ (YO). Post-transcriptional mechanisms ultimately control MIH levels in the hemolymph. Neurotransmitter-mediated electrical activity controls Ca 2+ -dependent vesicular release of MIH from the SG axon terminals, which may be modulated by nitric oxide (NO). In green shore crab, Carcinus maenas, nitric oxide synthase (NOS) protein and NO are present in the SG. Moreover, C. maenas are refractory to eyestalk ablation (ESA), suggesting other regions of the nervous system secrete sufficient amounts of MIH to prevent molting. By contrast, ESA induces molting in the blackback land crab, Gecarcinus lateralis. Double-label immunofluorescence microscopy and quantitative polymerase chain reaction were used to localize and quantify MIH and NOS proteins and transcripts, respectively, in the ESG, brain, and thoracic ganglion (TG) of C. maenas and G. lateralis. In ESG, MIH- and NOS-immunopositive cells were closely associated in the SG of both species; confocal microscopy showed that NOS was localized in cells adjacent to MIH-positive axon terminals. In brain, MIH-positive cells were located in a small number of cells in the olfactory lobe; no NOS immunofluorescence was detected. In TG, MIH and NOS were localized in cell clusters between the segmental nerves. In G. lateralis, Gl-MIH and Gl-crustacean hyperglycemic hormone (CHH) mRNA levels were ~10 5 -fold higher in ESG than in brain or TG of intermolt animals, indicating that the ESG is the primary source of these neuropeptides. Gl-NOS and Gl-elongation factor (EF2) mRNA levels were also higher in the ESG. Molt stage had little or no effect on CHH, NOS, NOS-interacting protein (NOS-IP), membrane Guanylyl Cyclase-II (GC-II), and NO-independent GC-III expression in the ESG of both species. By contrast, MIH and NO receptor GC-I beta subunit (GC-Iβ) transcripts were increased during premolt and postmolt stages in G. lateralis, but not in C. maenas. MIH immunopositive cells in the brain and TG may be a secondary source of MIH; the release of MIH from these sources may contribute to the difference between the two species in response to ESA. The MIH-immunopositive cells in the TG may be the source of an MIH-like factor that mediates molt inhibition by limb bud autotomy. The association of MIH- and NOS-labeled cells in the ESG and TG suggests that NO may modulate MIH release. A model is proposed in which NO-dependent activation of GC-I inhibits Ca 2+ -dependent fusion of MIH vesicles with the nerve terminal membrane; the resulting decrease in MIH activates the YO and the animal enters premolt. Copyright © 2016 Elsevier Inc. All rights reserved.

Surface Compositions of Red Giant Stars in Globular Clusters

NASA Astrophysics Data System (ADS)

Cheng, Eric; Lau, Marie; Smith, Graeme; Chen, Brian

2018-01-01

Globular clusters (GCs) are excellent “laboratories” to study the formation and evolution of our galaxy. In order to understand, more specifically, the chemical compositions and stellar evolution of the stars in GCs, we ask whether or not deep internal mixing occurs in red giants or if in fact the compositions come from the primordial interstellar medium or previous generations of stars. It has been discovered that as a star evolves up the red giant branch, the surface carbon abundance decreases, which is evidence of deep internal mixing. We questioned whether these processes also affect O or Na abundance as a star evolves. We collected measurement data of red giants from GCs out of academic journals and sorted the data into catalogs. Then, we plotted the catalogs into figures, comparing surface O and Na each with stellar luminosity. Statistical tests were ran to quantify the amount of correlation between the variables. Out of 27 GCs, we concluded that eight show a positive correlation between Na and luminosity, and two show a negative correlation between O and luminosity. Properties of GCs were compared to determine if chemical distribution in stars depends on GCs as the self-enrichment scenario suggests. We created histograms of sodium distribution to test for bimodality to examine if there are separate trends in each GC. In six GCs, two different sequences of red giants appear for Na versus luminosity, suggesting evidence that the depth of mixing may differ among each red giant in a GC. This study has provided new evidence that the changing chemical abundances on the surfaces of red giants can be due to stellar evolutionary effects and deep internal mixing, which may not necessarily depend on the GC and may differ in depth among each red giant. Through this study, we learn more about stellar evolution which will eventually help us understand the origins of our universe. Most of this work was carried out by high school students working under the auspices of the Science Internship Program (SIP) at UC Santa Cruz.

Characterization of Leaf Extracts of Schinus terebinthifolius Raddi by GC-MS and Chemometric Analysis

PubMed Central

Carneiro, Fabíola B.; Lopes, Pablo Q.; Ramalho, Ricardo C.; Scotti, Marcus T.; Santos, Sócrates G.; Soares, Luiz A. L.

2017-01-01

Background: Schinus terebinthifolius Raddi belongs to Anacardiacea family and is widely known as “aroeira.” This species originates from South America, and its extracts are used in folk medicine due to its therapeutic properties, which include antimicrobial, anti-inflammatory, and antipyretic effects. The complexity and variability of the chemical constitution of the herbal raw material establishes the quality of the respective herbal medicine products. Objective: Thus, the purpose of this study was to investigate the variability of the volatile compounds from leaves of S. terebinthifolius. Materials and Methods: The samples were collected from different states of the Northeast region of Brazil and analyzed with a gas chromatograph coupled to a mass spectrometer (GC-MS). The collected data were analyzed using multivariate data analysis. Results: The samples’ chromatograms, obtained by GC-MS, showed similar chemical profiles in a number of peaks, but some differences were observed in the intensity of these analytical markers. The chromatographic fingerprints obtained by GC-MS were suitable for discrimination of the samples; these results along with a statistical treatment (principal component analysis [PCA]) were used as a tool for comparative analysis between the different samples of S. terebinthifolius. Conclusion: The experimental data show that the PCA used in this study clustered the samples into groups with similar chemical profiles, which builds an appropriate approach to evaluate the similarity in the phytochemical pattern found in the different leaf samples. SUMMARY The leave extracts of Schinus terebinthifolius were obtained by turbo-extractionThe extracts were partitioned with hexane and analyzed by GC-MSThe chromatographic data were analyzed using the principal component analysis (PCA)The PCA plots showed the main compounds (phellandrene, limonene, and carene), which were used to group the samples from a different geographical location in accordance to their chemical similarity. Abbreviations used: AL: Alagoas, BA: Bahia, CE: Ceará, CPETEC: Center for Weather Forecasting and Climate Studies, GC-MS: Gas chromatograph coupled to a mass spectrometer, MA: Maranhão, MVA: Multivariate data analysis, PB: Paraíba, PC1: Direction that describes the maximum variance of the original data, PC2: Maximum direction variance of the data in the subspace orthogonal to PC1, PCA: Principal component analysis, PE: Pernambuco, PI: Piauí, RN: Rio Grande do Norte, SE: Sergipe. PMID:29142431

3D automatic anatomy recognition based on iterative graph-cut-ASM

NASA Astrophysics Data System (ADS)

Chen, Xinjian; Udupa, Jayaram K.; Bagci, Ulas; Alavi, Abass; Torigian, Drew A.

2010-02-01

We call the computerized assistive process of recognizing, delineating, and quantifying organs and tissue regions in medical imaging, occurring automatically during clinical image interpretation, automatic anatomy recognition (AAR). The AAR system we are developing includes five main parts: model building, object recognition, object delineation, pathology detection, and organ system quantification. In this paper, we focus on the delineation part. For the modeling part, we employ the active shape model (ASM) strategy. For recognition and delineation, we integrate several hybrid strategies of combining purely image based methods with ASM. In this paper, an iterative Graph-Cut ASM (IGCASM) method is proposed for object delineation. An algorithm called GC-ASM was presented at this symposium last year for object delineation in 2D images which attempted to combine synergistically ASM and GC. Here, we extend this method to 3D medical image delineation. The IGCASM method effectively combines the rich statistical shape information embodied in ASM with the globally optimal delineation capability of the GC method. We propose a new GC cost function, which effectively integrates the specific image information with the ASM shape model information. The proposed methods are tested on a clinical abdominal CT data set. The preliminary results show that: (a) it is feasible to explicitly bring prior 3D statistical shape information into the GC framework; (b) the 3D IGCASM delineation method improves on ASM and GC and can provide practical operational time on clinical images.

MSH6- or PMS2-deficiency causes re-replication in DT40 B cells, but it has little effect on immunoglobulin gene conversion or on repair of AID-generated uracils

PubMed Central

Campo, Vanina A.; Patenaude, Anne-Marie; Kaden, Svenja; Horb, Lori; Firka, Daniel; Jiricny, Josef; Di Noia, Javier M.

2013-01-01

The mammalian antibody repertoire is shaped by somatic hypermutation (SHM) and class switch recombination (CSR) of the immunoglobulin (Ig) loci of B lymphocytes. SHM and CSR are triggered by non-canonical, error-prone processing of G/U mismatches generated by activation-induced deaminase (AID). In birds, AID does not trigger SHM, but it triggers Ig gene conversion (GC), a ‘homeologous’ recombination process involving the Ig variable region and proximal pseudogenes. Because recombination fidelity is controlled by the mismatch repair (MMR) system, we investigated whether MMR affects GC in the chicken B cell line DT40. We show here that Msh6−/− and Pms2−/− DT40 cells display cell cycle defects, including genomic re-replication. However, although IgVλ GC tracts in MMR-deficient cells were slightly longer than in normal cells, Ig GC frequency, donor choice or the number of mutations per sequence remained unaltered. The finding that the avian MMR system, unlike that of mammals, does not seem to contribute towards the processing of G/U mismatches in vitro could explain why MMR is unable to initiate Ig GC in this species, despite initiating SHM and CSR in mammalian cells. Moreover, as MMR does not counteract or govern Ig GC, we report a rare example of ‘homeologous’ recombination insensitive to MMR. PMID:23314153

DIRECT-DEPOSITION INFRARED SPECTROMETRY WITH GAS AND SUPERCRITICAL FLUID CHROMATOGRAPHY

EPA Science Inventory

A direct-deposition Fourier transform infrared (FT-IR) system has been evaluated for applicability to gas chromatography (GC) and supercritical fluid chromatography (SFC) of environmental analytes. A 100-um i.d. fused-silica transfer line was used for GC, and a 50-um transfer lin...

Adrenal-Derived Hormones Differentially Modulate Intestinal Immunity in Experimental Colitis

PubMed Central

de Souza, Patrícia Reis; Basso, Paulo José; Nardini, Viviani; Silva, Angelica; Banquieri, Fernanda

2016-01-01

The adrenal glands are able to modulate immune responses through neuroimmunoendocrine interactions and cortisol secretion that could suppress exacerbated inflammation such as in inflammatory bowel disease (IBD). Therefore, here we evaluated the role of these glands in experimental colitis induced by 3% dextran sulfate sodium (DSS) in C57BL/6 mice subjected to adrenalectomy, with or without glucocorticoid (GC) replacement. Mice succumbed to colitis without adrenals with a higher clinical score and augmented systemic levels of IL-6 and lower LPS. Furthermore, adrenalectomy negatively modulated systemic regulatory markers. The absence of adrenals resulted in augmented tolerogenic lamina propria dendritic cells but no compensatory local production of corticosterone and decreased mucosal inflammation associated with increased IFN-γ and FasL in the intestine. To clarify the importance of GC in this scenario, GC replacement in adrenalectomized mice restored different markers to the same degree of that observed in DSS group. Finally, this is the first time that adrenal-derived hormones, especially GC, were associated with the differential local modulation of the gut infiltrate, also pointing to a relationship between adrenalectomy and the modulation of systemic regulatory markers. These findings may elucidate some neuroimmunoendocrine mechanisms that dictate colitis outcome. PMID:27403034

Efficacy of adoptive cellular therapy in patients with gastric cancer: a meta-analysis.

PubMed

Shen, Dong; Liu, Zhi-Hao; Xu, Jia-Ning; Xu, Fang; Lin, Qin-Feng; Lin, Feng; Mao, Wei-Dong

2016-07-01

To systemically evaluate the efficacy and safety of adoptive cellular therapy for the treatment of gastric cancer (GC). We performed a systemic review and meta-analysis of nine eligible trials with GC and evaluated the effect of adoptive cellular therapy on the overall survival (OS) rate, T-cell subsets and adverse events. Overall, 829 patients were involved in the analysis. Adoptive cellular therapy significantly improved the OS rate compared with the control group. Meanwhile, we observed greatly increased percentages of CD3(+), CD4(+) and CD4(+)/CD8(+) in cellular therapy groups. Adoptive cellular therapy combined with adjuvant therapy resulted in significantly better OS rates, progression-free survival and T-lymphocyte responses in patients with GC.

Expression of Eph receptor tyrosine kinases and their ligands in human Granulosa lutein cells and human umbilical vein endothelial cells.

PubMed

Xu, Y; Zagoura, D; Keck, C; Pietrowski, D

2006-11-01

Corpus luteum development is regulated by gonadotropins and accompanied by extremely rapid vascularization of the avascular granulosa cell compartiment by endothelial cells (EC). The proliferation of Granulosa cells (GC) and EC is a complex interplay and takes place in a spatially and temporarily coordinated manner. The erythropoietin-producing hepatoma amplified sequence (Eph) receptors and their ligands-the ephrins- are a recently detected family of membrane located protein tyrosine kinases which play a crucial role in the growth and development of nerve and blood vessel network. We report about the mRNA expression pattern of Ephs and their ligands in human GC, in human EC, and in carcinoma cell lines OvCar-3 and Hela. The mRNA of EphA4, EphA7, ephrinA4, ephrinB1 and ephrinB2 was detected in GC and EC, while EphA2 was expressed only in GC. The expression of various Ephs and ephrins did not change in GC after stimulation with human chorion gonadotropin. Our study analyzes for the first time the expression of the complete human Eph/ephriny-system in GC and in EC. The remarkable similarity between these two cell types supports the theory of a functional relationship of EC and GC. In addition, it was shown that hCG is not a major determinant of Eph/ephrin regulation in GC.

Effects of the NO/soluble guanylate cyclase/cGMP system on the functions of human platelets.

PubMed

Makhoul, Stephanie; Walter, Elena; Pagel, Oliver; Walter, Ulrich; Sickmann, Albert; Gambaryan, Stepan; Smolenski, Albert; Zahedi, René P; Jurk, Kerstin

2018-06-01

Platelets are circulating sentinels of vascular integrity and are activated, inhibited, or modulated by multiple hormones, vasoactive substances or drugs. Endothelium- or drug-derived NO strongly inhibits platelet activation via activation of the soluble guanylate cyclase (sGC) and cGMP elevation, often in synergy with cAMP-elevation by prostacyclin. However, the molecular mechanisms and diversity of cGMP effects in platelets are poorly understood and sometimes controversial. Recently, we established the quantitative human platelet proteome, the iloprost/prostacyclin/cAMP/protein kinase A (PKA)-regulated phosphoproteome, and the interactions of the ADP- and iloprost/prostacyclin-affected phosphoproteome. We also showed that the sGC stimulator riociguat is in vitro a highly specific inhibitor, via cGMP, of various functions of human platelets. Here, we review the regulatory role of the cGMP/protein kinase G (PKG) system in human platelet function, and our current approaches to establish and analyze the phosphoproteome after selective stimulation of the sGC/cGMP pathway by NO donors and riociguat. Present data indicate an extensive and diverse NO/riociguat/cGMP phosphoproteome, which has to be compared with the cAMP phosphoproteome. In particular, sGC/cGMP-regulated phosphorylation of many membrane proteins, G-proteins and their regulators, signaling molecules, protein kinases, and proteins involved in Ca 2+ regulation, suggests that the sGC/cGMP system targets multiple signaling networks rather than a limited number of PKG substrate proteins. Copyright © 2018 Elsevier Inc. All rights reserved.

Role of glucocorticoids on inflammatory response in nonimmunosuppressed patients with pneumonia: a pilot study.

PubMed

Montón, C; Ewig, S; Torres, A; El-Ebiary, M; Filella, X; Rañó, A; Xaubet, A

1999-07-01

The aim of the study was to assess the potential role of glucocorticoids (GC) in modulating systemic and pulmonary inflammatory responses in mechanically ventilated patients with severe pneumonia. Twenty mechanically ventilated patients with pneumonia treated at a respiratory intensive care unit (RICU) of a 1,000-bed teaching hospital were prospectively studied. All patients had received prior antimicrobial treatment. Eleven patients received GC (mean+/-SD dose of i.v. methylprednisolone 677+/-508 mg for 9+/-7 days), mainly for bronchial dilatation. Serum and bronchoalveolar lavage fluid (BALF) tumour necrosis factor (TNF)-alpha, interleukin (IL)-1beta, IL-6 and C-reactive protein levels were measured in all patients. The inflammatory response was attenuated in patients receiving GC, both systemically (IL-6 1,089+/-342 versus 630+/-385 pg x mL(-1), p=0.03; C-reactive protein 34+/-5 versus 19+/-5 mg x L(-1), p=0.04) and locally in BALF (TNF-alpha 118+/-50 versus 24+/-5 pg x mL(-1), p= 0.05; neutrophil count: 2.4+/-1.1 x 10(9) cells x L(-1) (93+/-3%) versus 1.9+/-1.8 x 10(9) cells x L(-1) (57+/-16%), p=0.03). Four of the 11 (36%) patients receiving GC died compared to six (67%) who were not receiving GC (p=0.37). The present pilot study suggests that glucocorticoids decrease systemic and lung inflammatory responses in mechanically ventilated patients with severe pneumonia receiving antimicrobial treatment.