Major Quantitative Trait Loci and Putative Candidate Genes for Powdery Mildew Resistance and Fruit-Related Traits Revealed by an Intraspecific Genetic Map for Watermelon (Citrullus lanatus var. lanatus).

PubMed

Kim, Kwang-Hwan; Hwang, Ji-Hyun; Han, Dong-Yeup; Park, Minkyu; Kim, Seungill; Choi, Doil; Kim, Yongjae; Lee, Gung Pyo; Kim, Sun-Tae; Park, Young-Hoon

2015-01-01

An intraspecific genetic map for watermelon was constructed using an F2 population derived from 'Arka Manik' × 'TS34' and transcript sequence variants and quantitative trait loci (QTL) for resistance to powdery mildew (PMR), seed size (SS), and fruit shape (FS) were analyzed. The map consists of 14 linkage groups (LGs) defined by 174 cleaved amplified polymorphic sequences (CAPS), 2 derived-cleaved amplified polymorphic sequence markers, 20 sequence-characterized amplified regions, and 8 expressed sequence tag-simple sequence repeat markers spanning 1,404.3 cM, with a mean marker interval of 6.9 cM and an average of 14.6 markers per LG. Genetic inheritance and QTL analyses indicated that each of the PMR, SS, and FS traits is controlled by an incompletely dominant effect of major QTLs designated as pmr2.1, ss2.1, and fsi3.1, respectively. The pmr2.1, detected on chromosome 2 (Chr02), explained 80.0% of the phenotypic variation (LOD = 30.76). This QTL was flanked by two CAPS markers, wsb2-24 (4.00 cM) and wsb2-39 (13.97 cM). The ss2.1, located close to pmr2.1 and CAPS marker wsb2-13 (1.00 cM) on Chr02, explained 92.3% of the phenotypic variation (LOD = 68.78). The fsi3.1, detected on Chr03, explained 79.7% of the phenotypic variation (LOD = 31.37) and was flanked by two CAPS, wsb3-24 (1.91 cM) and wsb3-9 (7.00 cM). Candidate gene-based CAPS markers were developed from the disease resistance and fruit shape gene homologs located on Chr.02 and Chr03 and were mapped on the intraspecific map. Colocalization of these markers with the major QTLs indicated that watermelon orthologs of a nucleotide-binding site-leucine-rich repeat class gene containing an RPW8 domain and a member of SUN containing the IQ67 domain are candidate genes for pmr2.1 and fsi3.1, respectively. The results presented herein provide useful information for marker-assisted breeding and gene cloning for PMR and fruit-related traits.

Major Quantitative Trait Loci and Putative Candidate Genes for Powdery Mildew Resistance and Fruit-Related Traits Revealed by an Intraspecific Genetic Map for Watermelon (Citrullus lanatus var. lanatus)

PubMed Central

Kim, Kwang-Hwan; Hwang, Ji-Hyun; Han, Dong-Yeup; Park, Minkyu; Kim, Seungill; Choi, Doil; Kim, Yongjae; Lee, Gung Pyo; Kim, Sun-Tae; Park, Young-Hoon

2015-01-01

An intraspecific genetic map for watermelon was constructed using an F2 population derived from ‘Arka Manik’ × ‘TS34’ and transcript sequence variants and quantitative trait loci (QTL) for resistance to powdery mildew (PMR), seed size (SS), and fruit shape (FS) were analyzed. The map consists of 14 linkage groups (LGs) defined by 174 cleaved amplified polymorphic sequences (CAPS), 2 derived-cleaved amplified polymorphic sequence markers, 20 sequence-characterized amplified regions, and 8 expressed sequence tag-simple sequence repeat markers spanning 1,404.3 cM, with a mean marker interval of 6.9 cM and an average of 14.6 markers per LG. Genetic inheritance and QTL analyses indicated that each of the PMR, SS, and FS traits is controlled by an incompletely dominant effect of major QTLs designated as pmr2.1, ss2.1, and fsi3.1, respectively. The pmr2.1, detected on chromosome 2 (Chr02), explained 80.0% of the phenotypic variation (LOD = 30.76). This QTL was flanked by two CAPS markers, wsb2-24 (4.00 cM) and wsb2-39 (13.97 cM). The ss2.1, located close to pmr2.1 and CAPS marker wsb2-13 (1.00 cM) on Chr02, explained 92.3% of the phenotypic variation (LOD = 68.78). The fsi3.1, detected on Chr03, explained 79.7% of the phenotypic variation (LOD = 31.37) and was flanked by two CAPS, wsb3-24 (1.91 cM) and wsb3-9 (7.00 cM). Candidate gene-based CAPS markers were developed from the disease resistance and fruit shape gene homologs located on Chr.02 and Chr03 and were mapped on the intraspecific map. Colocalization of these markers with the major QTLs indicated that watermelon orthologs of a nucleotide-binding site-leucine-rich repeat class gene containing an RPW8 domain and a member of SUN containing the IQ67 domain are candidate genes for pmr2.1 and fsi3.1, respectively. The results presented herein provide useful information for marker-assisted breeding and gene cloning for PMR and fruit-related traits. PMID:26700647

Hazard Models From Periodic Dike Intrusions at Kı¯lauea Volcano, Hawai`i

NASA Astrophysics Data System (ADS)

Montgomery-Brown, E. K.; Miklius, A.

2016-12-01

The persistence and regular recurrence intervals of dike intrusions in the East Rift Zone (ERZ) of Kı¯lauea Volcano lead to the possibility of constructing a time-dependent intrusion hazard model. Dike intrusions are commonly observed in Kı¯lauea Volcano's ERZ and can occur repeatedly in regions that correlate with seismic segments (sections of rift seismicity with persistent definitive lateral boundaries) proposed by Wright and Klein (USGS PP1806, 2014). Five such ERZ intrusions have occurred since 1983 with inferred locations downrift of the bend in Kı¯lauea's ERZ, with the first (1983) being the start of the ongoing ERZ eruption. The ERZ intrusions occur on one of two segments that are spatially coincident with seismic segments: Makaopuhi (1993 and 2007) and Nāpau (1983, 1997, and 2011). During each intrusion, the amount of inferred dike opening was between 2 and 3 meters. The times between ERZ intrusions for same-segment pairs are all close to 14 years: 14.07 (1983-1997), 14.09 (1997-2011), and 13.95 (1993-2007) years, with the Nāpau segment becoming active about 3.5 years after the Makaopuhi segment in each case. Four additional upper ERZ intrusions are also considered here. Dikes in the upper ERZ have much smaller opening ( 10 cm), and have shorter recurrence intervals of 8 years with more variability. The amount of modeled dike opening during each of these events roughly corresponds to the amount of seaward south flank motion and deep rift opening accumulated in the time between events. Additionally, the recurrence interval of 14 years appears to be unaffected by the magma surge of 2003-2007, suggesting that flank motion, rather than magma supply, could be a controlling factor in the timing and periodicity of intrusions. Flank control over the timing of magma intrusions runs counter to the historical research suggesting that dike intrusions at Kı¯lauea are driven by magma overpressure. This relatively free sliding may have resulted from decreased friction following the 1975 Kalapana earthquake. A hazard model can be constructed from the historical intrusion record (i.e., how long has it been since an intrusion on that segment), and augmented by monitoring the accumulation of strain across the rift and local seismicity rates.

The gene for spinal cerebellar ataxia 3 (SCA3) is located in a region of approximately 3 cM on chromosome 14q24.3-q32.2.

PubMed Central

Stevanin, G; Cancel, G; Dürr, A; Chneiweiss, H; Dubourg, O; Weissenbach, J; Cann, H M; Agid, Y; Brice, A

1995-01-01

SCA3, the gene for spinal cerebellar ataxia 3, was recently mapped to a 15-cM interval between D14S67 and D14S81 on chromosome 14q, by linkage analysis in two families of French ancestry. The SCA3 candidate region has now been refined by linkage analysis with four new microsatellite markers (D14S256, D14S291, D14S280, and AFM343vf1) in the same two families, in which 19 additional individuals were genotyped, and in a third French family. Combined two-point linkage analyses show that the new markers, D14S280 and AFM343vf1, are tightly linked to the SCA3 locus, with maximal lod scores, at recombination fraction, (theta) = .00, of 7.05 and 13.70, respectively. Combined multipoint and recombinant haplotype analyses localize the SCA3 locus to a 3-cM interval flanked by D14S291 and D14S81. The same allele for D14S280 segregates with the disease locus in the three kindreds. This allele is frequent in the French population, however, and linkage disequilibrium is not clearly established. The SCA3 locus remains within the 29-cM region on 14q24.3-q32.2 containing the gene for the Machado-Joseph disease, which is clinically related to the phenotype determined by SCA3, but it cannot yet be concluded that both diseases result from alterations of the same gene. PMID:7825578

Targeted mapping and linkage analysis of morphological isozyme, and RAPD markers in peach.

PubMed

Chaparro, J X; Werner, D J; O'Malley, D; Sederoff, R R

1994-02-01

Nine different F2 families of peach [Prunus persica (L.) Batsch] were analyzed for linkage relationships between 14 morphological and two isozyme loci. Linkage was detected between weeping (We) and white flower (W), 33 cM; double flower (Dl) and pillar (Br), 10 cM; and flesh color (Y) and malate dehydrogenase (Mdh1), 26 cM. A leaf variant phenotypically distinct from the previously reported wavy-leaf (Wa) mutant in peach was found in progeny of 'Davie II'. The new willow-leaf character (designated Wa2) was closely linked (0.4 cM) to a new dwarf phenotype (designated Dw3). Two families derived from the pollen-fertile cultivar 'White Glory' segregated for pollen sterility, but segregation did not follow a 3∶1 ratio. Evidence is presented suggesting that 'White Glory' possesses a pollen-sterility gene (designated Ps2) that is non-allelic to the previously reported pollen-sterility gene (Ps) in peach. Ps2 was linked to both weeping (We-Ps2, 15.5 cM) and white flower (Ps2-W, 25.3 cM). A genomic map of peach containing 83 RAPD, one isozyme, and four morphological markers was generated using an F2 family obtained by selfing an NC174RL x 'Pillar' F1. A total of 83 RAPD markers were assigned to 15 linkage groups. Various RAPD markers were linked to morphological traits. Bulked segregant analysis was used to identify RAPD markers flanking the red-leaf (Gr) and Mdh1 loci in the NC174RL x 'Pillar' and 'Marsun' x 'White Glory' F2 families, respectively. Three markers flanking Mdh1 and ten markers flanking Gr were identified. The combination of RAPD markers and bulked segregant analysis provides an efficient method of identifying markers flanking traits of interest. Markers linked to traits that can only be scored late in development are potentially useful for marker-aided selection in trees. Alternatives for obtaining additional map order information for repulsion-phase markers in large F2 populations are proposed.

Fine mapping of the Darier's disease locus on chromosome 12q.

PubMed

Richard, G; Wright, A R; Harris, S; Doyle, S Z; Korge, B; Mazzanti, C; Tanaka, T; Harth, W; McBride, O W; Compton, J G; Bale, S J; DiGiovanna, J J

1994-11-01

Darier's disease (DD) is an autosomal dominant genodermatosis characterized by epidermal acantholysis and dyskeratosis. We have performed genetic linkage studies in 10 families with DD (34 affected) by analyzing 14 polymorphic microsatellite markers. Our results confirm recent reports mapping the DD gene to chromosome 12q23-q24.1. Haplotype analysis of recombinant chromosomes in our families, along with previously reported data, narrow the location of the DD gene to a 5 cM interval flanked by the loci D12S354 and D12S84/D12S105. This localization allowed exclusion of two known genes, PLA2A and PAH, as candidate loci for DD. Three other gene loci (PPP1C, PMCH, PMCA1), mapping in 12q21-q24, remain potential candidates.

Pleistocene Thermocline Reconstruction and Oxygen Minimum Zone Evolution in the Maldives

NASA Astrophysics Data System (ADS)

Yu, S. M.; Wright, J.

2017-12-01

Drift deposits of the southern flank the Kardiva Channel in the eastern Inner Sea of the Maldives provide a complete record of Pleistocene water column changes in conjunction with monsoon cyclicity and fluctuations in the current system. We sampled IODP Site 359-U1467 to reconstruct water column using foraminiferal stable isotope records. This unlithified lithostratigraphic unit is rich in well-preserved microfossils and has an average sedimentation rate of 3.4 cm/yr. Marine Isotope Stages 1-6 were identified and show higher sedimentation rates during the interglacial sections approaching 6 cm/kyr. We present the δ13C and δ18O record of planktonic and benthic foraminiferal species taken at intervals of 3 cm. Globigerinoides ruber was used to constrain surface conditions. The thermocline dwelling species, Globorotalia menardii, was chosen to monitor fluctuations in the thermocline compared to the mixed layer. Lastly, the δ13C of the benthic species, Cibicidoides subhaidingerii and Planulina renzi, reveal changes to the bottom water ventilation and expansion of oxygen minimum zones over time. All three taxa recorded similar changes in δ18O over the glacial/interglacial cycles which is remarkable given the large sea level change ( 120 m) and the relatively shallow water depth ( 450 m). There is a small increase in the δ13C gradient during the glacial intervals which might reflect less ventilated bottom waters in the Inner Sea. This multispecies approach allows us to better constrain the thermocline hydrography and suggests that changes in the OMZ thickness are driven by the intensification of the monsoon cycles while painting a more cohesive picture to the changes in the water column structure.

Safety and tolerability of high-intensity focused ultrasonography for noninvasive body sculpting: 24-week data from a randomized, sham-controlled study.

PubMed

Jewell, Mark L; Weiss, Robert A; Baxter, Richard A; Cox, Sue Ellen; Dover, Jeffrey S; Donofrio, Lisa M; Glogau, Richard G; Kane, Michael C; Martin, Patrick; Lawrence, Ira D; Schlessinger, Joel

2012-09-01

High-intensity focused ultrasonography (HIFU) is a nonsurgical, noninvasive method for body sculpting in nonobese patients. The technique ablates subcutaneous adipose tissue by causing molecular vibrations that increase tissue temperature and induce rapid cell necrosis. The authors evaluate the long-term safety of a HIFU device for sculpting the abdomen and flanks. Adults with subcutaneous abdominal fat ≥2.5 cm in thickness who met screening criteria were randomized to receive HIFU treatment of the anterior abdomen and flanks at 1 of 3 energy levels (3 passes per patient): 47 J/cm(2) (141 J/cm(2) total), 59 J/cm(2) (177 J/cm(2) total), or 0 J/cm(2) (no energy applied; sham control). Safety was assessed for 24 weeks and included laboratory testing, physical examinations, and documentation of adverse events. Adverse events (AE) included mild to moderate discomfort, ecchymosis, and edema, all of which were transient. There were no reports of scarring or burns and no clinically meaningful changes in lipid panel findings, inflammatory markers, or renal or hepatic function. Physical examination results were unremarkable. This HIFU device exhibited an AE profile similar to that of sham treatment. There were no significant changes from baseline in laboratory values, including lipid levels.

A genetic linkage map of the long arm of human chromosome 22.

PubMed

Rouleau, G A; Haines, J L; Bazanowski, A; Colella-Crowley, A; Trofatter, J A; Wexler, N S; Conneally, P M; Gusella, J F

1989-01-01

We have used a recombinant phage library enriched for chromosome 22 sequences to isolate and characterize eight anonymous DNA probes detecting restriction fragment length polymorphisms on this autosome. These were used in conjunction with eight previously reported loci, including the genes BCR, IGLV, and PDGFB, four anonymous DNA markers, and the P1 blood group antigen, to construct a linkage map for chromosome 22. The linkage group is surprisingly large, spanning 97 cM on the long arm of the chromosome. There are no large gaps in the map; the largest intermarker interval is 14 cM. Unlike several other chromosomes, little overall difference was observed for sex-specific recombination rates on chromosome 22. The availability of a genetic map will facilitate investigation of chromosome 22 rearrangements in such disorders as cat eye syndrome and DiGeorge syndrome, deletions in acoustic neuroma and meningioma, and translocations in Ewing sarcoma. This defined set of linked markers will also permit testing chromosome 22 for the presence of particular disease genes by family studies and should immediately support more precise mapping and identification of flanking markers for NF2, the defective gene causing bilateral acoustic neurofibromatosis.

A novel autosomal recessive non-syndromic hearing impairment locus (DFNB47) maps to chromosome 2p25.1-p24.3.

PubMed

Hassan, Muhammad Jawad; Santos, Regie Lyn P; Rafiq, Muhammad Arshad; Chahrour, Maria H; Pham, Thanh L; Wajid, Muhammad; Hijab, Nadine; Wambangco, Michael; Lee, Kwanghyuk; Ansar, Muhammad; Yan, Kai; Ahmad, Wasim; Leal, Suzanne M

2006-01-01

Hereditary hearing impairment (HI) displays extensive genetic heterogeneity. Autosomal recessive (AR) forms of prelingual HI account for approximately 75% of cases with a genetic etiology. A novel AR non-syndromic HI locus (DFNB47) was mapped to chromosome 2p25.1-p24.3, in two distantly related Pakistani kindreds. Genome scan and fine mapping were carried out using microsatellite markers. Multipoint linkage analysis resulted in a maximum LOD score of 4.7 at markers D2S1400 and D2S262. The three-unit support interval was bounded by D2S330 and D2S131. The region of homozygosity was found within the three-unit support interval and flanked by markers D2S2952 and D2S131, which corresponds to 13.2 cM according to the Rutgers combined linkage-physical map. This region contains 5.3 Mb according to the sequence-based physical map. Three candidate genes, KCNF1, ID2 and ATP6V1C2 were sequenced, and were found to be negative for functional sequence variants.

A novel autosomal recessive non-syndromic hearing impairment locus (DFNB47) maps to chromosome 2p25.1-p24.3

PubMed Central

Hassan, Muhammad Jawad; Santos, Regie Lyn P.; Rafiq, Muhammad Arshad; Chahrour, Maria H.; Pham, Thanh L.; Wajid, Muhammad; Hijab, Nadine; Wambangco, Michael; Lee, Kwanghyuk; Ansar, Muhammad; Yan, Kai; Ahmad, Wasim; Leal, Suzanne M.

2010-01-01

Hereditary hearing impairment (HI) displays extensive genetic heterogeneity. Autosomal recessive (AR) forms of prelingual HI account for ~75% of cases with a genetic etiology. A novel AR non-syndromic HI locus (DFNB47) was mapped to chromosome 2p25.1-p24.3, in two distantly related Pakistani kindreds. Genome scan and fine mapping were carried out using microsatellite markers. Multipoint linkage analysis resulted in a maximum LOD score of 4.7 at markers D2S1400 and D2S262. The three-unit support interval was bounded by D2S330 and D2S131. The region of homozygosity was found within the three-unit support interval and flanked by markers D2S2952 and D2S131, which corresponds to 13.2 cM according to the Rutgers combined linkage-physical map. This region contains 5.3 Mb according to the sequence-based physical map. Three candidate genes, KCNF1, ID2 and ATP6V1C2 were sequenced, and were found to be negative for functional sequence variants. PMID:16261342

Quinoline-Flanked Diketopyrrolopyrrole Copolymers Breaking through Electron Mobility over 6 cm2 V-1 s-1 in Flexible Thin Film Devices.

PubMed

Ni, Zhenjie; Dong, Huanli; Wang, Hanlin; Ding, Shang; Zou, Ye; Zhao, Qiang; Zhen, Yonggang; Liu, Feng; Jiang, Lang; Hu, Wenping

2018-03-01

Herein, the design and synthesis of novel π-extended quinoline-flanked diketopyrrolopyrrole (DPP) [abbreviated as QDPP] motifs and corresponding copolymers named PQDPP-T and PQDPP-2FT for high performing n-type organic field-effect transistors (OFETs) in flexible organic thin film devices are reported. Serving as DPP-flankers in backbones, quinoline is found to effectively tune copolymer optoelectric properties. Compared with TDPP and pyridine-flanked DPP (PyDPP) analogs, widened bandgaps and strengthened electron deficiency are achieved. Moreover, both hole and electron mobility are improved two orders of magnitude compared to those of PyDPP analogs (PPyDPP-T and PPyDPP-2FT). Notably, featuring an all-acceptor-incorporated backbone, PQDPP-2FT exhibits electron mobility of 6.04 cm 2 V -1 s -1 , among the highest value in OFETs fabricated on flexible substrates to date. Moreover, due to the widened bandgap and strengthened electron deficiency of PQDPP, n-channel on/off ratio over 10 5 with suppressed hole transport is first realized in the ambipolar DPP-based copolymers. © 2018 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

High-resolution meiotic and physical mapping of the Best`s vitelliform macular dystrophy (VMD2) locus to pericentromeric chromosome 11

DOE Office of Scientific and Technical Information (OSTI.GOV)

Weber, B.H.F.; Vogt, G.; Walker, D.

1994-09-01

Vitelliform macular dystrophy, also known as Best`s disease, is a juvenile-onset macular degeneration with autosomal dominant inheritance. It is characterized by well-demarcated accumulation of lipofuscin-like material within and beneath the retinal pigment epithelium (RPE) and classically results in an egg yolk-like appearance of the macula. Typically, carriers of the disease gene show a specific electrophysiological sign which can be detected by electrooculography (EOG). The EOG measures a standing potential between the cornea and the retina which is primarily generated by the RPE. The histopathological findings as well as the EOG abnormalities suggest that Best`s disease is a generalized disorder ofmore » the RPE. The basic biochemical defect is still unknown. As a first step in the positional cloning of the defective gene, the Best`s disease locus was mapped to chromosome 11 between markers at D11S871 and INT2. Subsequently, his region was refined to a 3.7 cM interval flanked by loci D11S903 and PYGM. To further narrow the D11S903-PYGM interval and to obtain an estimate of the physical size of the minimal candidate region, we used a combination of high-resolution PCR hybrid mapping and analysis of recombinant Best`s disease chromosomes. We identified six markers from within the D11S903-PYGM interval that show no recombination with the defective gene in three multigeneration Best`s disease pedigrees. Our hybrid panel localizes these markers on either side of the centromere on chromosome 11. The closest markers flanking the disease gene are at D11S986 in band p12-11.22 and at D11S480 in band q13.2-13.3. Our study demonstrates that the physical size of the Best`s disease region is exceedingly larger than was previously estimated from the genetic data due to the proximity of the defective gene to the centromere of chromosome 11.« less

Ground deformation at Merapi Volcano, Java, Indonesia: distance changes, June 1988-October 1995

USGS Publications Warehouse

Young, K.D.; Voight, B.; ,; ,; ,; Casadevall, T.J.

2000-01-01

Edifice deformations are reported here for the period 1988–1995 at Merapi volcano, one of the most active and dangerous volcanoes in Indonesia. The study period includes a major resumption in lava effusion in January 1992 and a major dome collapse in November 1994. The data comprise electronic distance measurements (EDM) on a summit trilateration network, slope distance changes measured to the upper flanks, and other data collected from 1988 to 1995. A major consequence of this study is the documentation of a significant 4-year period of deformation precursory to the 1992 eruption. Cross-crater strain rates accelerated from less than 3×10−6/day between 1988 and 1990 to more than 11×10−6/day just prior to the January 1992 activity, representing a general, asymmetric extension of the summit during high-level conduit pressurization. After the vent opened and effusion of lava resumed, strain occurred at a much-reduced rate of less than 2×10−6/day. EDM measurements between lower flank benchmarks and the upper edifice indicate displacements as great as 1 m per year over the four years before the 1992 eruption. The Gendol breach, a pronounced depression formed by the juxtaposition of old lava coulées on the southeast flank, functioned as a major displacement discontinuity. Since 1993, movements have generally not exceeded the 95% confidence limits of the summit network. Exceptions to this include 12 cm outward movement for the northwest crater rim in 1992–1993, probably from loading by newly erupted dome lava, and movements as much as 7 cm on the south flank between November 1994 and September 1995. No short-term precursors were noted before the November 1994 lava dome collapse, but long-term adjustments of crater geometry accompanied lava dome growth in 1994. Short-term 2-cm deflation of the edifice occurred following the November 1994 dome collapse.

Hydrogeochemical, Stable Isotopes and Hydrology of Fogo Volcano Perched Aquifers: São Miguel Island, Azores (Portugal)

NASA Astrophysics Data System (ADS)

Antunes, P. C.; Boutt, D. F.; Martini, A. M.; Ferstad, J.; Rodrigues, F. C.

2012-12-01

Fogo Volcano is located at central part of São Miguel Island and corresponds to a polygenetic volcano with a caldera made by an intercalated accumulation of volcaniclastic deposits and lava flows. São Miguel Island is one of the nine volcanic islands that form the Azores Archipelago. The volcano is 950 meters high, with a caldera diameter of 3.2 Km, which holds a lake inside. The last eruption occurred in 1563-1564, as one of a group of seven traquitic eruptions occurring within the last 5000 years. The volcanic activity is related to hydrothermal activity in a geothermal field located in the volcanoes North flank. The hydrology of Fogo Volcano is characterized by a series of perched-water bodies drained by a large number of springs grouped at different altitudes on the volcano flanks. It is possible to identify three types of water (1) Fresh water, cold temperature (12 - 17 C) with low dissolved solids contents (average conductivity of 179 μS/cm), pH range between 6.60 and 7.82, dominated by the major ions Na, K, HCO3, and Cl, and correspond mainly to sodium bicarbonate type water. (2) Mineral water, cold temperature (12.5 - 19.4 C) with low dissolved solids contents (average conductivity of 261 μS/cm), acid pH range between 4.62 and 6.79, and correspond mainly to sodium bicarbonate type water. (3) Thermal water, with temperature of 32 C, high dissolved solids content (4.62 mS/cm), with a pH around 4.50 and belongs to sodium sulfate type water. South Fogo volcano have only fresh water springs and at high elevation, springs drained from pumice fall deposits near 700 m of altitude. Water dissolved solids contents increased slightly with springs at lower altitude due to water-rock interaction. Springs sampled around 700 m high have a conductivity average of 85 μS/cm, at 520 m an average of 129 μS/cm, at 430 m an average of 182 μS/cm, at 200 m an average of 192 μS/cm and at 12 m high sea level and average of 472 μS/cm. This trend is observed at North Fogo volcano flank for fresh water springs. Mineral and thermal waters show an influence of magmatic input, a natural water pollution source in areas with volcanic activity. Rainwater isotopic composition showed elevation effect variation with lighter δ18O and δD values and recharge appear to be at highest altitudes with influence of sea salt from atmospheric contamination. Evaporation is clearly associated with mineral and thermal waters. Hydrogeochemistry differentiates the low altitude springs at South volcano flank where they are separated by ultramafic intrusions supporting the existence of dike impounded aquifers as Peterson (1972) proposed with the Hawaiian conceptual model for volcanic islands.

Sudden aseismic fault slip on the south flank of Kilauea volcano.

PubMed

Cervelli, Peter; Segall, Paul; Johnson, Kaj; Lisowski, Michael; Miklius, Asta

2002-02-28

One of the greatest hazards associated with oceanic volcanoes is not volcanic in nature, but lies with the potential for catastrophic flank failure. Such flank failure can result in devastating tsunamis and threaten not only the immediate vicinity, but coastal cities along the entire rim of an ocean basin. Kilauea volcano on the island of Hawaii, USA, is a potential source of such flank failures and has therefore been monitored by a network of continuously recording geodetic instruments, including global positioning system (GPS) receivers, tilt meters and strain meters. Here we report that, in early November 2000, this network recorded transient southeastward displacements, which we interpret as an episode of aseismic fault slip. The duration of the event was about 36 hours, it had an equivalent moment magnitude of 5.7 and a maximum slip velocity of about 6[?]cm per day. Inversion of the GPS data reveals a shallow-dipping thrust fault at a depth of 4.5[?]km that we interpret as the down-dip extension of the Hilina Pali--Holei Pali normal fault system. This demonstrates that continuously recording geodetic networks can detect accelerating slip, potentially leading to warnings of volcanic flank collapse.

Evidence for microbial carbon and sulfur cycling in deeply buried ridge flank basalt

USGS Publications Warehouse

Lever, Mark A.; Rouxel, Olivier; Alt, Jeffrey C.; Shimizu, Nobumichi; Ono, Shuhei; Coggon, Rosalind M.; Shanks, Wayne C.; Lapham, Laura; Elvert, Marcus; Prieto-Mollar, Xavier; Hinrichs, Kai-Uwe; Inagaki, Fumio; Teske, Andreas

2013-01-01

Sediment-covered basalt on the flanks of mid-ocean ridges constitutes most of Earth's oceanic crust, but the composition and metabolic function of its microbial ecosystem are largely unknown. By drilling into 3.5-million-year-old subseafloor basalt, we demonstrated the presence of methane- and sulfur-cycling microbes on the eastern flank of the Juan de Fuca Ridge. Depth horizons with functional genes indicative of methane-cycling and sulfate-reducing microorganisms are enriched in solid-phase sulfur and total organic carbon, host δ13C- and δ34S-isotopic values with a biological imprint, and show clear signs of microbial activity when incubated in the laboratory. Downcore changes in carbon and sulfur cycling show discrete geochemical intervals with chemoautotrophic δ13C signatures locally attenuated by heterotrophic metabolism.

Retrospective analysis of mercury content in feathers of birds collected from the state of Michigan (1895-2007).

PubMed

Head, Jessica A; DeBofsky, Abigail; Hinshaw, Janet; Basu, Niladri

2011-10-01

Museum specimens were used to analyze temporal trends in feather mercury (Hg) concentrations in birds collected from the state of Michigan between the years 1895 and 2007. Hg was measured in flank and secondary feathers from three species of birds that breed in the Great Lakes region; common terns (n = 32), great blue herons (n = 35), and herring gulls (n = 35). More than 90% of the Hg in feathers should be organic, but some of the heron and gull feathers collected prior to 1936 showed evidence of contamination with inorganic Hg, likely from museum preservatives. The data presented here therefore consist of organic Hg in pre-1936 samples and total Hg in post-1936 samples. Insufficient tissue was available from terns to assess organic Hg content. Mean Hg concentrations ranged from 2.9 ± 2.5 μg/g Hg in tern flank feathers to 12.4 ± 10.6 μg/g Hg in gull flank feathers. No linear trend of Hg contamination over time was detected in herons and gulls. Though a significant decrease was noted for terns, these data are presented with caution given the strong likelihood that earlier samples were preserved with inorganic mercury. When data were separated into 30-year intervals, Hg content in heron and gull feathers collected from birds sampled between 1920 and 1949 were consistently highest but not to a level of statistical significance. For example, Hg concentrations in gull secondary feathers collected in the second time interval (1920-1949) were 11.5 ± 7.8. This value was 67% higher than the first time interval (1890-1919), 44% higher than the third interval (1950-1979), and 187% higher than the fourth interval (1980-2009). Studies on Great Lakes sediments also showed greatest Hg accumulations in the mid-twentieth century. Through the use of museum specimens, these results present a unique snapshot of Hg concentrations in Great Lakes biota in the early part of the twentieth century.

Randomized sham-controlled trial to evaluate the safety and effectiveness of a high-intensity focused ultrasound device for noninvasive body sculpting.

PubMed

Jewell, Mark L; Baxter, Richard A; Cox, Sue Ellen; Donofrio, Lisa M; Dover, Jeffrey S; Glogau, Richard G; Kane, Michael A; Weiss, Robert A; Martin, Patrick; Schlessinger, Joel

2011-07-01

High-intensity focused ultrasound presents a noninvasive approach to body sculpting for nonobese patients. The purpose of this study was to evaluate the safety and effectiveness of a high-intensity focused ultrasound device for sculpting of the abdomen and flanks. Adults (aged 18 to 65 years) with subcutaneous abdominal fat greater than or equal to 2.5 cm thick who met screening criteria were randomized to receive high-intensity focused ultrasound treatment of the anterior abdomen and flanks at energy levels (a total of three passes each) of 47 J/cm (141 J/cm total), 59 J/cm (177 J/cm), or 0 J/cm (no energy applied, sham control). The primary endpoint was change from baseline waist circumference at the iliac crest level at posttreatment week 12. Subjective aesthetic assessments included the Global Aesthetic Improvement Scale and a patient satisfaction questionnaire. Safety assessments included adverse events, laboratory values, and physical examinations. For the primary endpoint, in the intent-to-treat population, statistical significance versus sham was achieved for the 59-J/cm (-2.44; p = 0.01) but not the 47-J/cm treatment group (-2.06 cm; p = 0.13). In a per-protocol population, statistical significance versus sham was achieved for both the 59-J/cm (-2.52 cm; p = 0.002) and the 47-J/cm treatment groups (-2.10 cm; p = 0.04). Investigator subjective measures of global aesthetic improvement and patient satisfaction also favored each active treatment versus sham. Adverse events included mild to moderate discomfort, bruising, and edema. Laboratory values and physical examinations were unremarkable. Treatment with this high-intensity focused ultrasound device reduced waist circumference and was generally well tolerated for noninvasive body sculpting. Reduction in waist circumference was statistically significant with both active treatments (per protocol). Therapeutic, II.(Figure is included in full-text article.).

Efficacy of pyropheophorbide-a-hexyl ether for photodynamic therapy of rat 9L gliosarcoma

NASA Astrophysics Data System (ADS)

Autry-Conwell, Susan A.; Edwards, Benjamin F.; Boggan, James E.; Gandour-Edwards, Regina; Pandey, Ravindra K.; Dougherty, Thomas J.

1993-06-01

In preliminary studies, the efficacy of a new photosensitizer, pyropheophorbide-(alpha) - hexyl ether (HPPH #23), for use in photodynamic therapy (PDT) was assessed using the rat 9L gliosarcoma tumor model in subcutaneous flank tumors, intracranial tumors, and in vivo. Flank and intracranial tumors were irradiated with 75 - 203 J/cm2 24 hours after 0.3 - 0.6 mg/kg IV injection of HPPH #23. At 24 hours post-PDT, and flank tumors showed a range of necrosis at the highest laser dose from 50 - 100%. The overlying skin and underlying muscle were spared. Intracranial tumors exhibited moderate to severe hemorrhagic necrosis. Areas of brain adjacent to tumor within the irradiated field also showed some damage. In vitro phototoxicity of HPPH #23 was compared to that of Photofrin II (PhII). Cells growing in culture dishes were exposed to HPPH #23 or PhII for 20 hours, washed free of unbound drug, then irradiated at 2.5 J/cm2, 17 mW/cm2 at 665 nm (HPPH #23) or 630 nm (PhII). Irradiated cultures were maintained in dark incubators for an additional 4 - 5 days, and phototoxic inhibition of cell proliferation was quantified by the sulphorhodamine B spectrophotometric assay. Under identical irradiation conditions, the IC50 for HPPH #23 (0.25 (mu) g/ml) was 10-fold lower than that of PhII (2.5 (mu) g/ml). Complete cell kill was achieved at sensitizer doses of 0.5 (mu) g/ml (HPPH #23) and 5.0 (mu) g/ml (PhII).

Steepening of Waves at the Duskside Magnetopause

NASA Technical Reports Server (NTRS)

Plaschke, F.; Kahr, N.; Fischer, D.; Nakamura, R.; Baumjohann, W.; Magnes, W.; Burch, J. L.; Torbert, R.; Russell, C. T.; Giles, B. L.;

Fine-mapping of a marbling trait to a 2.9-cM region on bovine chromosome 7 in Japanese Black cattle.

PubMed

Hirano, T; Watanabe, T; Inoue, K; Sugimoto, Y

2008-02-01

To locate quantitative trait loci (QTL) for intramuscular fat deposition (marbling) in a local population of Japanese Black cattle, we performed a genome scan using a paternal half-sib family of Bull A. A marbling QTL was mapped in the region flanked by DIK0079 (20.7 cM) and TGLA303 (39.3 cM) on bovine chromosome (BTA) 7, affecting 5.0% of the total family variance. Haplotype analysis of the QTL region revealed that the marbling-increasing Q allele was transmitted from the dam. On the other hand, Bull B, a maternal half-sib of Bull A, did not receive the Q allele from its dam, based on the following findings: (i) a marbling QTL on BTA7 was not detected in the Bull B paternal half-sib family; (ii) recombination between DIK0079 (20.7 cM) and RM006 (25.4 cM) in the QTL region was observed in the maternal chromosome of Bull B; and (iii) the Q-harbouring steers from Bull A exhibited significantly higher marbling than the steers from Bull B and the remaining steers from Bull A. To precisely compare the maternal chromosomes of both bulls, we constructed a bacterial artificial chromosome contig covering the region between DIK0079 and RM006 and developed DNA markers. The recombination occurred between DIK8042 and DIK8044, indicating that the marbling QTL was in a 2.9-cM region flanked by DIK0079 and DIK8044.

Mid-to-Late Holocene Hydrologic Variability in the Southeastern Mojave Desert Using Sediments from Ford Lake

NASA Astrophysics Data System (ADS)

Mayer, S. A.; Kirby, M. E.; Anderson, W. T., Jr.; Stout, C.; Palermo, J. A.

2015-12-01

The focal point of most lacustrine studies in the Mojave National Preserve (MNP) to date has been on lakes fed by the Mojave River. The source of the Mojave River is found on the northern flank of the San Bernardino Mountains. Consequently, the lakes that receive these waters are predominantly responding to the winter-only coastal southwest United States climate (e.g., Kirby et al., 2015 - Silver Lake); to a lesser degree, these lakes are also influenced by the Mojave's bimodal winter/summer climate. Ford Lake, located in the southeastern Mojave Desert is a small closed basin lake with its drainage basin located exclusively within the Mojave Desert. Therefore, sediment collected from Ford Lake contains a 100% Mojave-only climate signal. A 2.18 m sediment core was collected from the lake's depocenter in May 2015. Sediment analyses at 1 cm contiguous intervals include: magnetic susceptibility (MS), percent total organic matter, percent total carbonate content, and grain size analysis; C:N ratios, C and N isotope (δ13C and δ15N) analyses, and macrofossil counts are determined at 2 cm intervals. The site's age model is based on accelerator mass spectrometry (AMS) radiocarbon ages from discrete organic macrofossils or bulk organic carbon. To deconvolve the coastal climate, winter-only signal from the Mojave-only climate signal the data from Ford Lake will be compared to one Mojave River fed lake (Silver) and several southern California lakes (Lower Bear, Lake Elsinore, Dry Lake, and Zaca Lake). Our results will be analyzed in the context of climate forcings such as insolation and ocean - atmosphere dynamics.

Precise mapping of a locus affecting grain protein content in durum wheat.

PubMed

Olmos, S; Distelfeld, A; Chicaiza, O; Schlatter, A R; Fahima, T; Echenique, V; Dubcovsky, J

2003-11-01

Grain protein content (GPC) is an important factor in pasta and breadmaking quality, and in human nutrition. It is also an important trait for wheat growers because premium prices are frequently paid for wheat with high GPC. A promising source for alleles to increase GPC was detected on chromosome 6B of Triticum turgidum var. dicoccoides accession FA-15-3 (DIC). Two previous quantitative trait locus (QTL) studies found that the positive effect of DIC-6B was associated to a single locus located between the centromere and the Nor-B2 locus on the short arm of chromosome 6B. Microsatellite markers Xgwm508 and Xgwm193 flanking the QTL region were used in this study to develop 20 new homozygous recombinant substitution lines (RSLs) with crossovers between these markers. These 20 RSLs, plus nine RSLs developed in previous studies were characterized with four new RFLP markers located within this chromosome segment. Grain protein content was determined in three field experiments organized as randomized complete block designs with ten replications each. The QTL peaks for protein content were located in the central region of a 2.7-cM interval between RFLP markers Xcdo365 and Xucw67 in the three experiments. Statistical analyses showed that almost all lines could be classified unequivocally within low- and high- protein groups, facilitating the mapping of this trait as a single Mendelian locus designated Gpc-6B1. The Gpc-6B1 locus was mapped 1.5-cM proximal to Xcdo365 and 1.2-cM distal to Xucw67. These new markers can be used to reduce the size of the DIC chromosome segment selected in marker-assisted selection programs. Markers Nor-B2 and Xucw66 flanking the previous two markers can be used to select against the DIC segment and reduce the linkage drag during the transfer of Gpc-6B1 into commercial bread and pasta wheat varieties. The precise mapping of the high GPC gene, the high frequency of recombinants recovered in the targeted region, and the recent development of a tetraploid BAC library including the Gpc-6B1 DIC allele are the first steps towards the map-based cloning of this gene.

Whole-edifice ice volume change A.D. 1970 to 2007/2008 at Mount Rainier, Washington, based on LiDAR surveying

USGS Publications Warehouse

Sisson, T.W.; Robinson, J.E.; Swinney, D.D.

2011-01-01

Net changes in thickness and volume of glacial ice and perennial snow at Mount Rainier, Washington State, have been mapped over the entire edifice by differencing between a highresolution LiDAR (light detection and ranging) topographic survey of September-October 2007/2008 and the 10 m lateral resolution U.S. Geological Survey digital elevation model derived from September 1970 aerial photography. Excepting the large Emmons and Winthrop Glaciers, all of Mount Rainier's glaciers thinned and retreated in their terminal regions, with substantial thinning mainly at elevations <2000 m and the greatest thinning on southfacing glaciers. Mount Rainier's glaciers and snowfields also lost volume over the interval, excepting the east-flank Fryingpan and Emmons Glaciers and minor near-summit snowfields; maximum volume losses were centered from ~1750 m (north flank) to ~2250 m (south fl ank) elevation. The greatest single volume loss was from the Carbon Glacier, despite its northward aspect, due to its sizeable area at <2000 m elevation. Overall, Mount Rainier lost ~14 vol% glacial ice and perennial snow over the 37 to 38 yr interval between surveys. Enhanced thinning of south-flank glaciers may be meltback from the high snowfall period of the mid-1940s to mid-1970s associated with the cool phase of the Pacific Decadal Oscillation.

Refinement of the X-linked cataract locus (CXN) and gene analysis for CXN and Nance-Horan syndrome (NHS).

PubMed

Brooks, Simon; Ebenezer, Neil; Poopalasundaram, Subathra; Maher, Eamonn; Francis, Peter; Moore, Anthony; Hardcastle, Alison

2004-06-01

The X-linked congenital cataract (CXN) locus has been mapped to a 3-cM (approximately 3.5 Mb) interval on chromosome Xp22.13, which is syntenic to the mouse cataract disease locus Xcat and encompasses the recently refined Nance-Horan syndrome (NHS) locus. A positional cloning strategy has been adopted to identify the causative gene. In an attempt to refine the CXN locus, seven microsatellites were analysed within 21 individuals of a CXN family. Haplotypes were reconstructed confirming disease segregation with markers on Xp22.13. In addition, a proximal cross-over was observed between markers S3 and S4, thereby refining the CXN disease interval by approximately 400 Kb to 3.2 Mb, flanked by markers DXS9902 and S4. Two known genes (RAI2 and RBBP7) and a novel gene (TL1) were screened for mutations within an affected male from the CXN family and an NHS family by direct sequencing of coding exons and intron- exon splice sites. No mutations or polymorphisms were identified, therefore excluding them as disease-causative in CXN and NHS. In conclusion, the CXN locus has been successfully refined and excludes PPEF1 as a candidate gene. A further three candidates were excluded based on sequence analysis. Future positional cloning efforts will focus on the region of overlap between CXN, Xcat, and NHS.

Are calving interval, abortions, incidence of stillbirths and pre-weaning losses in Nguni cows associated with linear type traits?

PubMed

Zindove, T J; Chimonyo, M

2015-09-01

The association of six linear type traits with calving interval, abortions, incidence of stillbirths and pre-weaning losses in Nguni cows in semi-arid and sub-humid communal areas was investigated. It was hypothesised that the odds of a cow having caving interval greater than 1 year, aborting, experiencing stillbirths or losing a calf from calving to weaning decreased with increase in body depth, rump height, flank circumference, chest circumference, navel height and body length. Navel height was measured as the distance from the ground to the lowest point of the cow's belly bottom (navel). Data were collected from a total of 200 Nguni cows from two sites experiencing sub-humid and semi-arid environments (100 each) between May and June 2013. Cows in sub-humid regions were 2.57 times more likely to have a calving interval of 1 year than cows in semi-arid areas. As body depth increased, the number of calves lost by a cow before weaning decreased linearly (p < 0.05) in all parities except parity 4. Cows in semi-arid regions were 2.13 times more likely to lose a calf from calving to weaning. For each unit increase in body depth, the odds of a cow aborting decreased by 1.12 and the odds of a cow having stillbirth decreased by 1.15. Rump height, flank circumference, chest circumference, navel height and body length were not associated with calving interval, abortions, incidence of stillbirths and pre-weaning losses. It was, therefore, concluded that body depth influences calving interval, incidence of stillbirths and abortions in Nguni cows. Copyright © 2015 Elsevier B.V. All rights reserved.

Microearthquake evidence for reaction-driven cracking within the Trans-Atlantic Geotraverse active hydrothermal deposit

NASA Astrophysics Data System (ADS)

Pontbriand, Claire W.; Sohn, Robert A.

2014-02-01

We detected 32,078 very small, local microearthquakes (average ML = -1) during a 9 month deployment of five ocean bottom seismometers on the periphery of the Trans-Atlantic Geotraverse active mound. Seismicity rates were constant without any main shock-aftershock behavior at ~243 events per day at the beginning of the experiment, 128 events per day after an instrument failed, and 97 events per day at the end of the experiment when whale calls increased background noise levels. The microearthquake seismograms are characterized by durations of <1 s and most have single-phase P wave arrivals (i.e., no S arrivals). We accurately located 6207 of the earthquakes, with hypocenters clustered within a narrow depth interval from ~50 to 125 m below seafloor on the south and west flanks of the deposit. We model the microearthquakes as reaction-driven fracturing events caused by anhydrite deposition in the secondary circulation system of the hydrothermal mound and show that under reasonable modeling assumptions an average event represents a volume increase of 31-58 cm3, yielding an annual (seismogenic) anhydrite deposition rate of 27-51 m3.

Effect of abdominal irradiation on growth in boys treated for a Wilms' tumor

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wallace, W.H.; Shalet, S.M.; Morris-Jones, P.H.

1990-01-01

To study the effect of abdominal irradiation on spinal growth in childhood we have measured final height, sitting height, and leg length in 30 male survivors of a Wilms' tumor. Twenty-one patients received whole abdominal irradiation by either megavoltage therapy (MV: n = 11) or orthovoltage therapy (OV: n = 10); the remainder received flank irradiation. To examine the effect of the adolescent growth spurt on the irradiated spine we have followed prospectively seven patients who received whole abdominal irradiation and nine patients who received flank irradiation through puberty. Compared to a normal population there is a modest reduction inmore » median final standing height SDS (H.SDS: -1.15) accompanied by a marked reduction in median final sitting height SDS (S.HT SDS: -2.41) with no apparent effect on median subischial leg length SDS (SILL.SDS: 0.04). This reduction in spinal growth is reflected by a strongly positive disproportion score (DPS; (SILL SDS-S.HT SDS) + 2.81). The incidence of scoliosis after abdominal irradiation has been low (10%). During puberty there is a significant fall in median sitting height SDS after both whole abdominal (median fall: -0.9, P = 0.02) and flank irradiation (median fall: -1.85, P = 0.01), and this is reflected in a significant increase in disproportion (DPS: whole abdominal; median rise +1.4, P = 0.02: flank, median rise +1.34, P = 0.01). After MV irradiation there is a significant correlation between the degree of disproportion and the age at treatment (P less than 0.0005). The younger the patient is at treatment the more severe is the restriction on spinal growth and the shorter and more disproportionate they become as an adult. The estimated eventual loss in potential height from abdominal irradiation at the age of one is 10 cm and at five years is 7 cm.« less

Optimization of turning process through the analytic flank wear modelling

NASA Astrophysics Data System (ADS)

Del Prete, A.; Franchi, R.; De Lorenzis, D.

2018-05-01

In the present work, the approach used for the optimization of the process capabilities for Oil&Gas components machining will be described. These components are machined by turning of stainless steel castings workpieces. For this purpose, a proper Design Of Experiments (DOE) plan has been designed and executed: as output of the experimentation, data about tool wear have been collected. The DOE has been designed starting from the cutting speed and feed values recommended by the tools manufacturer; the depth of cut parameter has been maintained as a constant. Wear data has been obtained by means the observation of the tool flank wear under an optical microscope: the data acquisition has been carried out at regular intervals of working times. Through a statistical data and regression analysis, analytical models of the flank wear and the tool life have been obtained. The optimization approach used is a multi-objective optimization, which minimizes the production time and the number of cutting tools used, under the constraint on a defined flank wear level. The technique used to solve the optimization problem is a Multi Objective Particle Swarm Optimization (MOPS). The optimization results, validated by the execution of a further experimental campaign, highlighted the reliability of the work and confirmed the usability of the optimized process parameters and the potential benefit for the company.

Fine Mapping of the Dominant Potyvirus Resistance Gene Pvr7 Reveals a Relationship with Pvr4 in Capsicum annuum.

PubMed

Venkatesh, Jelli; An, Jeongtak; Kang, Won-Hee; Jahn, Molly; Kang, Byoung-Cheorl

2018-01-01

Pepper mottle virus (PepMoV) is the most common potyvirus infection of pepper plants and causes significant yield losses. The Pvr7 gene from Capsicum chinense PI159236 and the Pvr4 gene from C. annuum CM334 both have been reported to confer dominant resistance to PepMoV. The Pvr7 locus conferring resistance to PepMoV in C. annuum '9093' was previously mapped to chromosome 10. To develop a high-resolution map of the Pvr7 locus in 9093, we constructed an intraspecific F 2 mapping population consisting of 916 individuals by crossing PepMoV-resistant C. annuum '9093' and the PepMoV-susceptible C. annuum 'Jeju'. To delimit the Pvr7 target region, single-nucleotide polymorphism (SNP) markers derived from the Pvr4 region were used for genotyping the F 2 population. Molecular mapping delimited the Pvr7 locus to a physical interval of 258 kb, which was the same region as Pvr4 on chromosome 10. Three SNP markers derived from Pvr4 mapping perfectly cosegregated with PepMoV resistance. Sequencing analyses of the Pvr7 flanking markers and the Pvr4-specific gene indicated that Pvr7 and Pvr4 are the same gene. Resistance spectrum analysis of 9093 against pepper potyviruses showed that 9093 has a resistance spectrum similar to that of cultivar CM334. These combined results demonstrate that, unlike previously thought, the dominant PepMoV resistance in 9093 could be derived from C. annuum 'CM334', and that Pvr4 and Pvr7 should be considered as the same locus.

Surface deformation associated with the March 1996 earthquake swarm at Akutan Island, Alaska, revealed by C-band ERS and L-band JERS radar interferometry

USGS Publications Warehouse

Lu, Z.; Wicks, C.; Kwoun, O.; Power, J.A.; Dzurisin, D.

2005-01-01

In March 1996, an intense earthquake swarm beneath Akutan Island, Alaska, was accompanied by extensive ground cracking but no eruption of Akutan volcano. Radar interferograms produced from L-band JERS-1 and C-band ERS-1/2 images show uplift associated with the swarm by as much as 60 cm on the western part of the island. The JERS-1 interferogram has greater coherence, especially in areas with loose surface material or thick vegetation. It also shows subsidence of similar magnitude on the eastern part of the island and displacements along faults reactivated during the swarm. The axis of uplift and subsidence strikes about N70??W, which is roughly parallel to a zone of fresh cracks on the northwest flank of the volcano, to normal faults that cut the island and to the inferred maximum compressive stress direction. A common feature of models that fit the deformation is the emplacement of a shallow dike along this trend beneath the northwest flank of the volcano. Both before and after the swarm, the northwest flank was uplifted 5-20 mm/year relative to the southwest flank, probably by magma intrusion. The zone of fresh cracks subsided about 20 mm during 1996-1997 and at lesser rates thereafter, possibly because of cooling and degassing of the intrusion. ?? 2005 CASI.

Trichome density of main stem is tightly linked to PepMoV resistance in chili pepper (Capsicum annuum L.).

PubMed

Kim, Hyun Jung; Han, Jung-Heon; Kim, Seungill; Lee, Heung Ryul; Shin, Jun-Sung; Kim, Jeong-Ho; Cho, Juok; Kim, Young Ho; Lee, Hee Jae; Kim, Byung-Dong; Choi, Doil

2011-04-01

A relationship between pepper trichome and pepper mottle virus (PepMoV) resistance was examined. In an intraspecific F(2) mapping population from the cross between Capsicum annuum CM334 (trichome-bearing and PepMoV resistant) and Chilsungcho (glabrous and PepMoV susceptible), major QTLs for both traits were identified by composite interval mapping in linkage group (LG) 24 corresponding a telomere region on pepper chromosome 10. Ptel1 of putative trichome enhancing locus was a common major QTL for trichome density on the main stem and calyx. Ptel1 apart from HpmsE031 at a 1.03 cM interval was specifically associated to the trichome density on the main stem, whereas Ptel2 near m104 marker on LG2 was specific for the calyx trichome. Epistatic analysis indicated that Ptel1 engaged in controlling the trichome density by mutual interactions with the organ-specific QTLs. For PepMoV resistance, two QTLs (Pep1 and Pep2) were identified on the LG 24. Pep1 was located with Ptel1 in the R-gene cluster (RGC) for potyvirus resistance including Pvr4 with broad spectrum resistance to potyviruses. Pep1 flanking TG420 marker seemed to be the major factors determining correlation with PepMoV resistance. These results indicate that the level of trichome density on pepper main stem can be used as a morphological marker for Pvr4 in pepper breeding.

Unilateral flank ovariohysterectomy in guinea pigs (Cavia porcellus).

PubMed

Rozanska, D; Rozanski, P; Orzelski, M; Chlebicka, N; Putowska, K

2016-11-01

To describe a simple, minimally invasive method of ovariohysterectomy via a unilateral flank approach in guinea pigs, for use in routine desexing of healthy female guinea pigs or treatment of ovarian cysts. The subjects of this retrospective study were 41 client-owned guinea pigs submitted for routine desexing or treatment of ovarian cysts. They included 16 healthy female guinea pigs aged 8-12 months (Group 1), and 15 females aged from 9 months to 3 years (Group 2), and 10 females aged from 3 to 7 years (Group 3) with different-sized ovarian cysts. Prior to surgery, the animals received clinical examination, blood testing (complete blood count and serum biochemistry profile) and examination of the abdomen using ultrasonography, to assess the condition of the reproductive tract and ensure the guinea pigs were fit for surgery. Ovariohysterectomy was performed via a unilateral flank incision made close to the erector spinae muscle starting approximately 1 cm caudal to the last rib. Both ovaries, uterine horns, and the uterine cervix were localised, ligated, and dissected through this unilateral retroperitoneal incision. Ovariohysterectomy was successfully completed via a single flank incision in 38/41 (93%) guinea pigs. Three guinea pigs with ovarian cysts from Group 3, which were >6 years old died during surgery due to circulatory and respiratory failure under anaesthesia. In the remaining 38 cases, surgery proceeded without complications. A further two guinea pigs from Group 3 were reluctant to move or eat for the first 3 days after surgery but recovered after provision of supportive care. All 38 animals fully recovered and wound healing was normal. This is the first report of ovariohysterectomy via a unilateral flank incision in guinea pigs. This approach is a simple, minimally invasive and safe alternative to the midline or bilateral flank approaches currently used for surgery of the reproductive tract in guinea pigs.

Improvement in arm and post-partum abdominal and flank subcutaneous fat deposits and skin laxity using a bipolar radiofrequency, infrared, vacuum and mechanical massage device.

PubMed

Brightman, Lori; Weiss, Elliot; Chapas, Anne M; Karen, Julie; Hale, Elizabeth; Bernstein, Leonard; Geronemus, Roy G

2009-12-01

Skin laxity of the body is a growing cosmetic concern. Laxity can result from chronological or photoaging and changes in body dimensions during pregnancy or weight loss. The end result is loose, sagging skin, and localized fat deposits. Liposuction and abdominoplasty or brachioplasty are established approaches to these issues. Patient desire for alternatives to surgical correction has spawned the development of non-invasive body contouring devices. The combination of infrared light (IR), bipolar radiofrequency (RF), vacuum and mechanical massage (Velashape, Syneron Medical Ltd, Israel) has demonstrated efficacy in improving skin appearance and circumference of the thighs [Goldberg et al., Derm Surg 2008; 34:204-209; Fisher et al., Derm Surg 2005; 31:1237-1241; Arnoczky and Aksan, J Am Acad Orthop Surg 2000; 8:305-313; Alster and Tanzi, J Cosmetic Laser Therapy 2005; 7:81-85; Wanitphakdeedecha and Manuskiatti, J Cosmet Dermatol 2006; 5:284-288; Nootheti et al., Lasers Surg Med 2006; 38: 908-912], but only anecdotal evidence has supported its use on other anatomic locations. This study was designed to evaluate the efficacy and safety of Velashape on additional body sites and more rigorously examine the technology's impact on upper arm as well as abdominal and flank circumference. Subjects were 28-70 years old, skin types I-V. Nineteen subjects underwent 5 weekly treatments of the upper arms, and 10 subjects underwent 4 weekly treatments of the abdomen and flanks. Treatments were performed using Velashape. Circumference measurements, photographs, and subject weights were performed prior to treatment and at 1- and 3-month follow-ups. Subjects were asked to record their treatment satisfaction level. Change in arm circumference, at the 5th treatment was statistically significant with a mean loss of 0.625 cm. At 1- and 3-month follow-ups, mean loss was 0.71 and 0.597 cm respectively. Reduction of abdominal circumference at 3rd treatment was statistically significant with a 1.25 cm mean loss. At 1- and 3-month follow-ups, average loss was 1.43 and 1.82 cm respectively. This study demonstrates with statistical significance, sustainable reduction in circumference and improvement in appearance of arms and abdomen following treatment with Velashape. Copyright 2009 Wiley-Liss, Inc.

IR spectral assignments for the hydrated excess proton in liquid water.

PubMed

Biswas, Rajib; Carpenter, William; Fournier, Joseph A; Voth, Gregory A; Tokmakoff, Andrei

2017-04-21

The local environmental sensitivity of infrared (IR) spectroscopy to a hydrogen-bonding structure makes it a powerful tool for investigating the structure and dynamics of excess protons in water. Although of significant interest, the line broadening that results from the ultrafast evolution of different solvated proton-water structures makes the assignment of liquid-phase IR spectra a challenging task. In this work, we apply a normal mode analysis using density functional theory of thousands of proton-water clusters taken from reactive molecular dynamics trajectories of the latest generation multistate empirical valence bond proton model (MS-EVB 3.2). These calculations are used to obtain a vibrational density of states and IR spectral density, which are decomposed on the basis of solvated proton structure and the frequency dependent mode character. Decompositions are presented on the basis of the proton sharing parameter δ, often used to distinguish Eigen and Zundel species, the stretch and bend character of the modes, the mode delocalization, and the vibrational mode symmetry. We find there is a wide distribution of vibrational frequencies spanning 1200-3000 cm -1 for every local proton configuration, with the region 2000-2600 cm -1 being mostly governed by the distorted Eigen-like configuration. We find a continuous red shift of the special-pair O⋯H + ⋯O stretching frequency, and an increase in the flanking water bending intensity with decreasing δ. Also, we find that the flanking water stretch mode of the Zundel-like species is strongly mixed with the flanking water bend, and the special pair proton oscillation band is strongly coupled with the bend modes of the central H 5 O2+moiety.

IR spectral assignments for the hydrated excess proton in liquid water

NASA Astrophysics Data System (ADS)

Biswas, Rajib; Carpenter, William; Fournier, Joseph A.; Voth, Gregory A.; Tokmakoff, Andrei

2017-04-01

The local environmental sensitivity of infrared (IR) spectroscopy to a hydrogen-bonding structure makes it a powerful tool for investigating the structure and dynamics of excess protons in water. Although of significant interest, the line broadening that results from the ultrafast evolution of different solvated proton-water structures makes the assignment of liquid-phase IR spectra a challenging task. In this work, we apply a normal mode analysis using density functional theory of thousands of proton-water clusters taken from reactive molecular dynamics trajectories of the latest generation multistate empirical valence bond proton model (MS-EVB 3.2). These calculations are used to obtain a vibrational density of states and IR spectral density, which are decomposed on the basis of solvated proton structure and the frequency dependent mode character. Decompositions are presented on the basis of the proton sharing parameter δ, often used to distinguish Eigen and Zundel species, the stretch and bend character of the modes, the mode delocalization, and the vibrational mode symmetry. We find there is a wide distribution of vibrational frequencies spanning 1200-3000 cm-1 for every local proton configuration, with the region 2000-2600 cm-1 being mostly governed by the distorted Eigen-like configuration. We find a continuous red shift of the special-pair O⋯H+⋯O stretching frequency, and an increase in the flanking water bending intensity with decreasing δ. Also, we find that the flanking water stretch mode of the Zundel-like species is strongly mixed with the flanking water bend, and the special pair proton oscillation band is strongly coupled with the bend modes of the central H5+O2 moiety.

Impact of bottom trawling on deep-sea sediment properties along the flanks of a submarine canyon.

PubMed

Martín, Jacobo; Puig, Pere; Masqué, Pere; Palanques, Albert; Sánchez-Gómez, Anabel

2014-01-01

The offshore displacement of commercial bottom trawling has raised concerns about the impact of this destructive fishing practice on the deep seafloor, which is in general characterized by lower resilience than shallow water regions. This study focuses on the flanks of La Fonera (or Palamós) submarine canyon in the Northwestern Mediterranean, where an intensive bottom trawl fishery has been active during several decades in the 400-800 m depth range. To explore the degree of alteration of surface sediments (0-50 cm depth) caused by this industrial activity, fishing grounds and control (untrawled) sites were sampled along the canyon flanks with an interface multicorer. Sediment cores were analyzed to obtain vertical profiles of sediment grain-size, dry bulk density, organic carbon content and concentration of the radionuclide 210Pb. At control sites, surface sediments presented sedimentological characteristics typical of slope depositional systems, including a topmost unit of unconsolidated and bioturbated material overlying sediments progressively compacted with depth, with consistently high 210Pb inventories and exponential decaying profiles of 210Pb concentrations. Sediment accumulation rates at these untrawled sites ranged from 0.3 to 1.0 cm y-1. Sediment properties at most trawled sites departed from control sites and the sampled cores were characterized by denser sediments with lower 210Pb surface concentrations and inventories that indicate widespread erosion of recent sediments caused by trawling gears. Other alterations of the physical sediment properties, including thorough mixing or grain-size sorting, as well as organic carbon impoverishment, were also visible at trawled sites. This work contributes to the growing realization of the capacity of bottom trawling to alter the physical properties of surface sediments and affect the seafloor integrity over large spatial scales of the deep-sea.

Impact of Bottom Trawling on Deep-Sea Sediment Properties along the Flanks of a Submarine Canyon

PubMed Central

Martín, Jacobo; Puig, Pere; Masqué, Pere; Palanques, Albert; Sánchez-Gómez, Anabel

2014-01-01

The offshore displacement of commercial bottom trawling has raised concerns about the impact of this destructive fishing practice on the deep seafloor, which is in general characterized by lower resilience than shallow water regions. This study focuses on the flanks of La Fonera (or Palamós) submarine canyon in the Northwestern Mediterranean, where an intensive bottom trawl fishery has been active during several decades in the 400–800 m depth range. To explore the degree of alteration of surface sediments (0–50 cm depth) caused by this industrial activity, fishing grounds and control (untrawled) sites were sampled along the canyon flanks with an interface multicorer. Sediment cores were analyzed to obtain vertical profiles of sediment grain-size, dry bulk density, organic carbon content and concentration of the radionuclide 210Pb. At control sites, surface sediments presented sedimentological characteristics typical of slope depositional systems, including a topmost unit of unconsolidated and bioturbated material overlying sediments progressively compacted with depth, with consistently high 210Pb inventories and exponential decaying profiles of 210Pb concentrations. Sediment accumulation rates at these untrawled sites ranged from 0.3 to 1.0 cm y−1. Sediment properties at most trawled sites departed from control sites and the sampled cores were characterized by denser sediments with lower 210Pb surface concentrations and inventories that indicate widespread erosion of recent sediments caused by trawling gears. Other alterations of the physical sediment properties, including thorough mixing or grain-size sorting, as well as organic carbon impoverishment, were also visible at trawled sites. This work contributes to the growing realization of the capacity of bottom trawling to alter the physical properties of surface sediments and affect the seafloor integrity over large spatial scales of the deep-sea. PMID:25111298

Identification and fine-mapping of Xa33, a novel gene for resistance to Xanthomonas oryzae pv. oryzae.

PubMed

Kumar, P Natraj; Sujatha, K; Laha, G S; Rao, K Srinivasa; Mishra, B; Viraktamath, B C; Hari, Y; Reddy, C S; Balachandran, S M; Ram, T; Madhav, M Sheshu; Rani, N Shobha; Neeraja, C N; Reddy, G Ashok; Shaik, H; Sundaram, R M

2012-02-01

Broadening of the genetic base for identification and transfer of genes for resistance to insect pests and diseases from wild relatives of rice is an important strategy in resistance breeding programs across the world. An accession of Oryza nivara, International Rice Germplasm Collection (IRGC) accession number 105710, was identified to exhibit high level and broad-spectrum resistance to Xanthomonas oryzae pv. oryzae. In order to study the genetics of resistance and to tag and map the resistance gene or genes present in IRGC 105710, it was crossed with the bacterial blight (BB)-susceptible varieties 'TN1' and 'Samba Mahsuri' (SM) and then backcrossed to generate backcross mapping populations. Analysis of these populations and their progeny testing revealed that a single dominant gene controls resistance in IRGC 105710. The BC(1)F(2) population derived from the cross IRGC 105710/TN1//TN1 was screened with a set of 72 polymorphic simple-sequence repeat (SSR) markers distributed across the rice genome and the resistance gene was coarse mapped on chromosome 7 between the SSR markers RM5711 and RM6728 at a genetic distance of 17.0 and 19.3 centimorgans (cM), respectively. After analysis involving 49 SSR markers located between the genomic interval spanned by RM5711 and RM6728, and BC(2)F(2) population consisting of 2,011 individuals derived from the cross IRGC 105710/TN1//TN1, the gene was fine mapped between two SSR markers (RMWR7.1 and RMWR7.6) located at a genetic distance of 0.9 and 1.2 cM, respectively, from the gene and flanking it. The linkage distances were validated in a BC(1)F(2) mapping population derived from the cross IRGC 105710/SM//2 × SM. The BB resistance gene present in the O. nivara accession was identified to be novel based on its unique map location on chromosome 7 and wider spectrum of BB resistance; this gene has been named Xa33. The genomic region between the two closely flanking SSR markers was in silico analyzed for putatively expressed candidate genes. In total, eight genes were identified in the region and a putative gene encoding serinethreonine kinase appears to be a candidate for the Xa33 gene.

A novel D458V mutation in the SANS PDZ binding motif causes atypical Usher syndrome.

PubMed

Kalay, E; de Brouwer, A P M; Caylan, R; Nabuurs, S B; Wollnik, B; Karaguzel, A; Heister, J G A M; Erdol, H; Cremers, F P M; Cremers, C W R J; Brunner, H G; Kremer, H

2005-12-01

Homozygosity mapping and linkage analysis in a Turkish family with autosomal recessive prelingual sensorineural hearing loss revealed a 15-cM critical region at 17q25.1-25.3 flanked by the polymorphic markers D17S1807 and D17S1806. The maximum two-point lod score was 4.07 at theta=0.0 for the marker D17S801. The linkage interval contains the Usher syndrome 1G gene (USH1G) that is mutated in patients with Usher syndrome (USH) type 1g and encodes the SANS protein. Mutation analysis of USH1G led to the identification of a homozygous missense mutation D458V at the -3 position of the PDZ binding motif of SANS. This mutation was also present homozygously in one out of 64 additional families from Turkey with autosomal recessive nonsyndromic hearing loss and heterozygously in one out of 498 control chromosomes. By molecular modeling, we provide evidence that this mutation impairs the interaction of SANS with harmonin. Ophthalmologic examination and vestibular evaluation of patients from both families revealed mild retinitis pigmentosa and normal vestibular function. These results suggest that these patients suffer from atypical USH.

Geology of natural gas reservoir: Upper Travis Peak Formation, western flank of Sabine Uplift, east Texas

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fracasso, M.A.

The Travis Peak Formation (Lower Cretaceous) in the eastern East Texas basin represents a sand-rich, fluvial-deltaic depositional system. This lobate, high-constructive deltaic system prograded radially to the southeast from an Upshur County locus. Regional studies of the Travis Peak established a threefold internal stratigraphic framework: a middle sand-rich fluvial and delta-plain sequence is gradationally overlain and underlain by a marine-influenced delta-fringe zone with a higher mud content. The entire Travis Peak succession thins over the Bethany dome on the western flank of the Sabine uplift. However, the delta-fringe sequences are relatively thicker over the structure because of a disproportionately greatermore » thinning of the middle sandy fluvial-deltaic sequence. Lesser sand deposition over the Bethany dome reflects an active structural control over facies distribution. Gas production in the Bethany field and surrounding area is concentrated in thin zones (5-15 ft) of the upper delta-fringe sequence. This distribution probably reflects the increased abundance of mudstone beds in the upper delta-fringe interval, which may have served as source rocks or barriers to upward gas migration, or as both. The predominant trapping mechanism in this region is stratigraphic sand pinch-out in a structurally updip direction on the flanks of major structures. Studies of core and closely spaced electric logs west of the Bethany dome help define the depositional systems in the upper delta-fringe producing interval. This sequence comprises a complex mosaic of continental and marine facies, and exhibits an overall upward trend of increasing marine influence that spans a gradual transition into transgressive carbonates of the Sligo Formation.« less

Differential effect of testosterone on pigmented spot, sebaceous glands and hair follicles in the Syrian hamster flank organ.

PubMed

Wuest, P A; Lucky, A W

1989-01-01

The androgen-dependent flank organ of the Golden Syrian hamster has been used as a model for acne and hair growth. 1-cm silastic capsules of testosterone (T) were implanted subcutaneously into female hamsters. Serum levels of T remained relatively constant after 1 week. Maximum growth of the pigmented spot occurred at 4 weeks but regressed by 6 weeks. In contrast, the growth of the pilosebaceous unit continued for 6 weeks. Total sebaceous area and number of sebaceous lobules increased by 3 weeks with a further increase in total area by 6 weeks. The distribution of lobule size shifted to more large lobules. Diameters of hair follicles increased at 3 and 6 weeks with a concomitant recruitment to large follicles. The density of hairs remained constant. The diminution in size of the pigmented spot between 4 and 6 weeks of T stimulation was not related to a reduction in serum T. In fact, there was persistent growth of the sebaceous glands and hair follicles at this time. The measurement of the pigmented spot of the flank organ is not a reliable indicator of the androgen responsiveness of sebaceous glands and/or hair follicles.

Latent heat loss and sweat gland histology of male goats in an equatorial semi-arid environment

NASA Astrophysics Data System (ADS)

de Melo Costa, Cíntia Carol; Maia, Alex Sandro Campos; Neto, José Domingues Fontenele; Oliveira, Steffan Edward Octávio; de Queiroz, João Paulo Araújo Fernandes

2014-03-01

The objective of this work was to quantify the heat loss by cutaneous evaporation of goats in an equatorial semi-arid environment. The latent heat loss from the body surfaces of these ten undefined breed goats was measured using a ventilated capsule in sun and shade and in the three body regions (neck, flank and hindquarters). Skin samples from these three regions were histologically analyzed to relate the quantity of sweat glands, the area of sweat glands and the epithelium thickness of each of these regions to the heat loss by cutaneous evaporation of the examined goats. The epithelium thickness that was measured varied significantly for body regions with different quantities and areas of sweat glands ( P < 0.01). Among the body regions that were examined, the samples from the neck demonstrated the highest epithelium thickness (16.23 ± 0.13 μm). However, the samples of sweat glands from the flank had the biggest area (43330.51 ± 778.71 μm2) and quantity per square centimeter (390 ± 9 cm-2). After the animals were exposed to sun, the flanks lost the greatest amount of heat by cutaneous evaporation (73.03 ± 1.75 W m-2) and possessed the highest surface temperatures (39.47 ± 0.18 °C). The histological characteristics may have influenced the heat loss by cutaneous evaporation that was observed in the flank region after the animals were exposed to sun.

Ultrasonography of the rumen of dairy cows

PubMed Central

2013-01-01

Background This study describes the ultrasonographic findings of the rumen in 45 healthy dairy cows. Results The cows were scanned on both sides using a 5.0 MHz transducer. The dorsal visible margin of the rumen ran parallel to the lung from cranioventral to caudodorsal. It was furthest from the dorsal midline at the 9th intercostal space (48.3 ± 9.24 cm) and closest at the 12th intercostal space (22.4 ± 3.27 cm). The longitudinal groove, which could be clearly identified at all examination sites because it appeared as a triangular notch, formed the ventral margin of the dorsal sac of the rumen. The dorsal sac of the rumen was largest at the caudal flank (40.3 ± 6.33 cm), where it was adjacent to the abdominal wall. The ventral sac of the rumen extended across the ventral midline into the right hemiabdomen and its ventral margin had a largely horizontal craniocaudal course. The height of the ventral sac of the rumen exceeded that of the dorsal sac at all examination sites; the maximum height was measured at the 12th intercostal space (62.6 ± 9.53 cm). The dorsal gas cap, characterised ultrasonographically by typical reverberation artifacts, was visible in all cows from the 12th intercostal space to the caudal flank. It was largest at the 12th intercostal space (20.5 ± 7.03 cm). The transition from the gas cap to the fibre mat was marked by the abrupt cessation of the reverberation artifacts. It was not possible to differentiate a fibre mat and a ventral fluid phase. The rumen could be imaged from the right side in 21 cows (47%). Conclusions Ultrasonography is well suited for the detailed examination of the rumen of cows. The reference values obtained from this study add to the diagnostic tools that are available for the assessment of bovine patients. PMID:23497545

A diagnostic challenge: An incidental lung nodule in a 48-year-old nonsmoker

PubMed Central

Christianson, Blake Eric; Gupta, Supriya; Vyas, Shikhar G; Spartz, Helena; Keshavamurthy, Jayanth H

2018-01-01

A 43-year-old female with a medical history of renal stones, hypertension, diabetes mellitus Type 2, and depression presented to her urologist with bilateral flank pain. She complained of worsening exertional dyspnea over the last several months with recent weight gain. She also endorsed night sweats and intermittent, scant hemoptysis over the past year. She denied fever, chills, nausea, vomiting, diarrhea, constipation, hematuria, or excessive joint or muscle pain. Physical examination was unremarkable. Computed tomography scan of abdomen and pelvis demonstrated bilateral nonobstructing renal stones and a 1.8 cm × 1.7 cm nodular opacity in the right lower lobe of the lung, not present on previous scan 1 year prior. Surgical wedge resection was performed and subsequent pathologic examination demonstrated a 1.2 cm × 0.6 cm × 0.5 cm soft, gelatinous well-demarcated mass in the right lower lobe wedge specimen without gross evidence of necrosis or hemorrhage confirming colloid adenocarcinoma of the lung. PMID:29697085

Nanotechnology combined therapy: tyrosine kinase-bound gold nanorod and laser thermal ablation produce a synergistic higher treatment response of renal cell carcinoma in animal model

USDA-ARS?s Scientific Manuscript database

Immunologically naïve nude mice (Athymic Nude-Foxn1nu) were injected bilaterally on the flanks (n=36) with 2.5 x 106 cells of a human metastatic renal cell carcinoma cell line (RCC 786-O). Subcutaneous xenograft tumors developed 1 cm palpable nodules. AuNR encapsulated in Human Serum Albumin (HSA) P...

Mapping by admixture linkage disequilibrium in human populations: Limits and guidelines

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stephens, J.C.; Briscoe, D.; O`Brien, S.J.

1994-10-01

Certain human hereditary conditions, notably those with low penetrance and those which require an environmental event such as infectious disease exposure, are difficult to localize in pedigree analysis, because of uncertainty in the phenotype of an affected patient`s relatives. An approach to locating these genes in human cohort studies would be to use association analysis, which depends on linkage disequilibrium of flanking polymorphic DNA markers. In theory, a high degree of linkage disequilibrium between genes separated by 10-20 cM will be generated and persist in populations that have a history of recent (3-20 generations ago) admixture between genetically differentiated racialmore » groups, such as has occurred in African Americans and Hispanic populations. We have conducted analytic and computer simulations to quantify the effect of genetic, genomic, and population parameters that affect the amount and ascertainment of linkage disequilibrium in populations with a history of genetic admixture. Our goal is to thoroughly explore the ranges of all relevant parameters or factors (e.g., sample size and degree of genetic differentiation between populations) that may be involved in gene localization studies, in hopes of prescribing guidelines for an efficient mapping strategy. The results provide reasonable limits on sample size (200-300 patients), marker number (200-300 in 20-cM intervals), and allele differentiation (loci with allele frequency difference of {ge}.3 between admixed parent populations) to produce an efficient approach (>95% ascertainment) for locating genes not easily tracked in human pedigrees. 321 refs., 8 figs., 7 tabs.« less

Genetic mapping and predictive testing for multiple endocrine neoplasia type 1 (MEN1)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pandit, S.D.; Read, C.; Liu, L.

1994-09-01

Multiple endocrine neoplasia type 1 (MEN1) is an autosomal dominant disorder with an estimated prevalance of 20-200 per million persons. It is characterized by the combined occurence of tumors involving two or more endocrine glands, namely the parathyroid glands, the endocrine pancreas and the anterior pituitary. This disorder affects virtually all age groups with an average range of 20-60 years. Linkage analysis mapped the MEN1 locus to 11q13 near the human muscle glycogen phosphorylase (PYGM) locus. Additional genetic mapping and deletion analysis studies have refined the region containing the MEN1 locus to a 3 cM interval flanked by markers PYGMmore » and D11S146/D11S97, a physical distance of approximately 1.5 Mb. We have identified 8 large families segregating MEN1 (71 affected from a population of 389 individuals). A high resolution reference map for the 11q13 region has been constructed using four new microsatellite markers, the CEPH reference (40 family) pedigree resource, and the CRI-MAP program package. Subsequent analyses using the LINKAGE program package and 8 MEN 1 families placed the MEN1 locus within the context of the microsatellite map. This map was used to develop a linkage-based predictive test. These markers have also been used to further refine the interval containing the MEN1 locus from the study of chromosome deletions (loss of heterozygosity, LOH studies) in paired sets of tumor and germline DNA from 87 MEN 1 affected individuals.« less

Paleo-environmental Setting of the Murray Formation of Aeolis Mons, Gale Crater, Mars, as Explored by the Curiosity Rover

NASA Astrophysics Data System (ADS)

Lewis, K. W.; Fedo, C.; Grotzinger, J. P.; Gupta, S.; Stein, N.; Rivera-Hernandez, F.; Watkins, J. A.; Banham, S.; Edgett, K. S.; Minitti, M. E.; Schieber, J.; Edgar, L. A.; Siebach, K. L.; Stack, K.; Newsom, H. E.; House, C. H.; Sumner, D. Y.; Vasavada, A. R.

2017-12-01

Since landing, the Mars Science Laboratory Curiosity rover climbed 300 meters in elevation from the floor of north Gale crater up the lower northwest flank of Aeolis Mons ("Mount Sharp"). Nearly 200 meters of this ascent was accomplished in the 1.5 years alone, as the rover was driven up-section through the sedimentary rocks of the informally designated "Murray" formation. This unit comprises a large fraction of the lower strata of Mt. Sharp along the rover traverse. Our exploration of the Murray formation reveals a diverse suite of fine-grained facies. Grain sizes range from finer grains than can be resolved by the MAHLI imager (particles <62.5 microns) up to medium sand; the finer fraction comprises the bulk of the stratigraphy. Layering occurs at a range of scales; the majority is expressed as parallel laminae of mm-scale. Some sandy stratigraphic intervals exhibit cross-stratification at ripple (cm) and dune (m and larger) scales; the inferred bedforms are consistent with a range of subaqueous and aeolian depositional settings. Diagenetic features include locally variable occurrences of concretions and near-ubiquitous Ca-sulfate veins; these attest to extended interaction of the sediment with aqueous fluids in the subsurface. As a whole, the sedimentary facies of the Murray formation have been interpreted to record a predominately lacustrine paleo-environment, with likely subaerial aeolian and fluvial intervals. Further exploration, including the campaign at the hematite-bearing Vera Rubin Ridge, continues to reveal the complex and long-lived depositional history of the Gale crater basin.

Pl(17) is a novel gene independent of known downy mildew resistance genes in the cultivated sunflower (Helianthus annuus L.).

PubMed

Qi, L L; Long, Y M; Jan, C C; Ma, G J; Gulya, T J

2015-04-01

Pl 17, a novel downy mildew resistance gene independent of known downy mildew resistance genes in sunflowers, was genetically mapped to linkage group 4 of the sunflower genome. Downy mildew (DM), caused by Plasmopara halstedii (Farl.). Berl. et de Toni, is one of the serious sunflower diseases in the world due to its high virulence and the variability of the pathogen. DM resistance in the USDA inbred line, HA 458, has been shown to be effective against all virulent races of P. halstedii currently identified in the USA. To determine the chromosomal location of this resistance, 186 F 2:3 families derived from a cross of HA 458 with HA 234 were phenotyped for their resistance to race 734 of P. halstedii. The segregation ratio of the population supported that the resistance was controlled by a single dominant gene, Pl 17. Simple sequence repeat (SSR) and single nucleotide polymorphism (SNP) primers were used to identify molecular markers linked to Pl 17. Bulked segregant analysis using 849 SSR markers located Pl 17 to linkage group (LG) 4, which is the first DM gene discovered in this linkage group. An F2 population of 186 individuals was screened with polymorphic SSR and SNP primers from LG4. Two flanking markers, SNP SFW04052 and SSR ORS963, delineated Pl 17 in an interval of 3.0 cM. The markers linked to Pl 17 were validated in a BC3 population. A search for the physical location of flanking markers in sunflower genome sequences revealed that the Pl 17 region had a recombination frequency of 0.59 Mb/cM, which was a fourfold higher recombination rate relative to the genomic average. This region can be considered amenable to molecular manipulation for further map-based cloning of Pl 17.

Deformation analysis of a sinkhole in Thuringia using multi-temporal multi-view stereo 3D reconstruction data

NASA Astrophysics Data System (ADS)

Petschko, Helene; Goetz, Jason; Schmidt, Sven

2017-04-01

Sinkholes are a serious threat on life, personal property and infrastructure in large parts of Thuringia. Over 9000 sinkholes have been documented by the Geological Survey of Thuringia, which are caused by collapsing hollows which formed due to solution processes within the local bedrock material. However, little is known about surface processes and their dynamics at the flanks of the sinkhole once the sinkhole has shaped. These processes are of high interest as they might lead to dangerous situations at or within the vicinity of the sinkhole. Our objective was the analysis of these deformations over time in 3D by applying terrestrial photogrammetry with a simple DSLR camera. Within this study, we performed an analysis of deformations within a sinkhole close to Bad Frankenhausen (Thuringia) using terrestrial photogrammetry and multi-view stereo 3D reconstruction to obtain a 3D point cloud describing the morphology of the sinkhole. This was performed for multiple data collection campaigns over a 6-month period. The photos of the sinkhole were taken with a Nikon D3000 SLR Camera. For the comparison of the point clouds the Multiscale Model to Model Comparison (M3C2) plugin of the software CloudCompare was used. It allows to apply advanced methods of point cloud difference calculation which considers the co-registration error between two point clouds for assessing the significance of the calculated difference (given in meters). Three Styrofoam cuboids of known dimensions (16 cm wide/29 cm high/11.5 cm deep) were placed within the sinkhole to test the accuracy of the point cloud difference calculation. The multi-view stereo 3D reconstruction was performed with Agisoft Photoscan. Preliminary analysis indicates that about 26% of the sinkhole showed changes exceeding the co-registration error of the point clouds. The areas of change can mainly be detected on the flanks of the sinkhole and on an earth pillar that formed in the center of the sinkhole. These changes describe toppling (positive change of a few centimeters at the earth pillar) and a few erosion processes along the flanks (negative change of a few centimeters) compared to the first date of data acquisition. Additionally, the Styrofoam cuboids have successfully been detected with an observed depth change of 10 cm. However, the limitations of this approach related to the co-registration of the point clouds and data acquisition (windy conditions) have to be analyzed in more detail.

Kulanaokuaiki 3: Product of an Energetic, Diatreme-Like Eruption at Kilauea

NASA Astrophysics Data System (ADS)

Fiske, R. S.; Rose, T. R.; Swanson, D. A.

2006-12-01

Kulanaokuaiki 3 (K-3), one of five units of the Kulanaokuaiki tephra, was erupted at ~AD 850 and blanketed large near-summit areas. Most complete remnants today are found in the Koa`e fault system and on the volcano`s south flank, S and SE of the summit. There, K-3 consists mostly of crystal-rich scoria lapilli contained in two sub-units, generally 1-8 cm thick, separated by a <1 cm "parting" of coarse ash and/or reticulite lapilli. Fine ash (<0.5 mm) makes up <3% of the two scoria units, increasing upward to ~10%. Dense lithic clasts are contained in both sub-units; ~85% of these consist of a wide variety of basalt (some enclosed in cored bombs), and ~12% are fine-coarse gabbro (some containing interstitial glass w/vesicles). The lithics are typically fresh, suggesting that the eruptive conduit pierced pristine parts of the volcano`s edifice rather than long-established, hydrothermally altered conduit systems. Erosion has stripped most K-3 from the south flank, leaving its lithics as scattered lags. Dense clasts, >4 kg and 18 cm across, are found as far as 7 km from the summit; progressively smaller clasts (~3-4 cm) fell at the coastline, 17 km away. The K-3 scoria deposits are unremarkable to the eye, but this belies cryptic vertical zonation that characterizes these units at widespread south-flank localities. The specific gravity of scoria lapilli (7-10 mm dia.) decreases upward in the lower sub-unit, accompanied by decreasing whole-rock MgO values. The pattern is reversed in the upper sub-unit, where specific gravity and MgO values increase upward. Available information suggests the specific gravity and MgO variations correlate with percentages of phenocrystic olivine. Preliminary geobarometry of pyroxene-glass pairs suggests that some gabbro was crystallizing at 5-7 km depth before exploding from the volcano-- far deeper than expected in a phreatomagmatic eruption. We interpret that CO2, known to be released in huge volumes from Kilauea`s summit, and which initially exsolves from basaltic magma at ~10 km depth, was the likely propellant for the diatreme-like K-3 eruption. While reaming a conduit to the surface, the streaming CO2, knicked the upper part of a magma body (likely dike-shaped), initiating its disintegration. The first pulse of the eruption released scoria that, along with spalled conduit wall rocks, erupted to form the lower K-3 sub-unit. Following a brief pause, when the air partly cleared to form the mid-K-3 parting, a second pulse entrained scoria originating from progressively deeper and more olivine-rich parts of the magma body. As a result, scoria containing greater percentages of phenocrystic olivine was erupted, and these were showered over the south flank to produce the observed upside-down "magma-chamber grading" in the upper K-3 sub-unit. Multi-mach exit velocities are visualized, and entrained lithic clasts may have been carried to heights of 15-20 km. These clasts were carried to the southeast as they fell through high-level northwesterly winds.

Linkage disequilibrium interval mapping of quantitative trait loci.

PubMed

Boitard, Simon; Abdallah, Jihad; de Rochambeau, Hubert; Cierco-Ayrolles, Christine; Mangin, Brigitte

2006-03-16

For many years gene mapping studies have been performed through linkage analyses based on pedigree data. Recently, linkage disequilibrium methods based on unrelated individuals have been advocated as powerful tools to refine estimates of gene location. Many strategies have been proposed to deal with simply inherited disease traits. However, locating quantitative trait loci is statistically more challenging and considerable research is needed to provide robust and computationally efficient methods. Under a three-locus Wright-Fisher model, we derived approximate expressions for the expected haplotype frequencies in a population. We considered haplotypes comprising one trait locus and two flanking markers. Using these theoretical expressions, we built a likelihood-maximization method, called HAPim, for estimating the location of a quantitative trait locus. For each postulated position, the method only requires information from the two flanking markers. Over a wide range of simulation scenarios it was found to be more accurate than a two-marker composite likelihood method. It also performed as well as identity by descent methods, whilst being valuable in a wider range of populations. Our method makes efficient use of marker information, and can be valuable for fine mapping purposes. Its performance is increased if multiallelic markers are available. Several improvements can be developed to account for more complex evolution scenarios or provide robust confidence intervals for the location estimates.

Genetics and fine mapping of a purple leaf gene, BoPr, in ornamental kale (Brassica oleracea L. var. acephala).

PubMed

Liu, Xiao-Ping; Gao, Bao-Zhen; Han, Feng-Qing; Fang, Zhi-Yuan; Yang, Li-Mei; Zhuang, Mu; Lv, Hong-Hao; Liu, Yu-Mei; Li, Zhan-Sheng; Cai, Cheng-Cheng; Yu, Hai-Long; Li, Zhi-Yuan; Zhang, Yang-Yong

2017-03-14

Due to its variegated and colorful leaves, ornamental kale (Brassica oleracea L. var. acephala) has become a popular ornamental plant. In this study, we report the fine mapping and analysis of a candidate purple leaf gene using a backcross population and an F 2 population derived from two parental lines: W1827 (with white leaves) and P1835 (with purple leaves). Genetic analysis indicated that the purple leaf trait is controlled by a single dominant gene, which we named BoPr. Using markers developed based on the reference genome '02-12', the BoPr gene was preliminarily mapped to a 280-kb interval of chromosome C09, with flanking markers M17 and BoID4714 at genetic distances of 4.3 cM and 1.5 cM, respectively. The recombination rate within this interval is almost 12 times higher than the usual level, which could be caused by assembly error for reference genome '02-12' at this interval. Primers were designed based on 'TO1000', another B. oleracea reference genome. Among the newly designed InDel markers, BRID485 and BRID490 were found to be the closest to BoPr, flanking the gene at genetic distances of 0.1 cM and 0.2 cM, respectively; the interval between the two markers is 44.8 kb (reference genome 'TO1000'). Seven annotated genes are located within the 44.8 kb genomic region, of which only Bo9g058630 shows high homology to AT5G42800 (dihydroflavonol reductase), which was identified as a candidate gene for BoPr. Blast analysis revealed that this 44.8 kb interval is located on an unanchored scaffold (Scaffold000035_P2) of '02-12', confirming the existence of assembly error at the interval between M17 and BoID4714 for reference genome '02-12'. This study identified a candidate gene for BoPr and lays a foundation for the cloning and functional analysis of this gene.

The influence of machining condition and cutting tool wear on surface roughness of AISI 4340 steel

NASA Astrophysics Data System (ADS)

Natasha, A. R.; Ghani, J. A.; Che Haron, C. H.; Syarif, J.

2018-01-01

Sustainable machining by using cryogenic coolant as the cutting fluid has been proven to enhance some machining outputs. The main objective of the current work was to investigate the influence of machining conditions; dry and cryogenic, as well as the cutting tool wear on the machined surface roughness of AISI 4340 steel. The experimental tests were performed using chemical vapor deposition (CVD) coated carbide inserts. The value of machined surface roughness were measured at 3 cutting intervals; beginning, middle, and end of the cutting based on the readings of the tool flank wear. The results revealed that cryogenic turning had the greatest influence on surface roughness when machined at lower cutting speed and higher feed rate. Meanwhile, the cutting tool wear was also found to influence the surface roughness, either improving it or deteriorating it, based on the severity and the mechanism of the flank wear.

Wilms Tumor With Metastasis to the Vagina: A Case Report.

PubMed

Howe, Adam S; Morganstern, Bradley A; Appelbaum, Heather; Mehta, Sandeep; Palmer, Lane S

2017-03-01

A 12-year-old female presented with abdominal pain, night sweats, weight loss, constipation, dysmenorrhea, menorrhagia, and vaginal discharge. Examination revealed a palpable flank mass and a large tumor adherent to the anterior vaginal wall. Computed tomography scan demonstrated a 23 cm mass in the left kidney, a separate 10.8 cm pelvic mass, and metastatic disease. Biopsies were consistent with Wilms tumor. Neoadjuvant chemotherapy and a left radical nephrectomy were performed for her stage IV disease as the kidney was amiable to complete resection. The patient received radiation and resumed chemotherapy. She was doing well with improved symptoms at follow-up. Copyright © 2016 Elsevier Inc. All rights reserved.

Collinearity Analysis and High-Density Genetic Mapping of the Wheat Powdery Mildew Resistance Gene Pm40 in PI 672538

PubMed Central

Fatima, Syeda Akash; Yang, Jiezhi; Chen, Wanquan; Liu, Taiguo; Hu, Yuting; Li, Qing; Guo, Jingwei; Zhang, Min; Lei, Li; Li, Xin; Tang, Shengwen; Luo, Peigao

2016-01-01

The wheat powdery mildew resistance gene Pm40, which is located on chromosomal arm 7BS, is effective against nearly all prevalent races of Blumeria graminis f. sp tritici (Bgt) in China and is carried by the common wheat germplasm PI 672538. A set of the F1, F2 and F2:3 populations from the cross of the resistant PI 672538 with the susceptible line L1034 were used to conduct genetic analysis of powdery mildew resistance and construct a high-density linkage map of the Pm40 gene. We constructed a high-density linkage genetic map with a total length of 6.18 cM and average spacing between markers of 0.48 cM.Pm40 is flanked by Xwmc335 and BF291338 at genetic distances of 0.58 cM and 0.26 cM, respectively, in deletion bin C-7BS-1-0.27. Comparative genomic analysis based on EST-STS markers established a high level of collinearity of the Pm40 genomic region with a 1.09-Mbp genomic region on Brachypodium chromosome 3, a 1.16-Mbp genomic region on rice chromosome 8, and a 1.62-Mbp genomic region on sorghum chromosome 7. We further anchored the Pm40 target intervals to the wheat genome sequence. A putative linear index of 85 wheat contigs containing 97 genes on 7BS was constructed. In total, 9 genes could be considered as candidates for the resistances to powdery mildew in the target genomic regions, which encoded proteins that were involved in the plant defense and response to pathogen attack. These results will facilitate the development of new markers for map-based cloning and marker-assisted selection of Pm40 in wheat breeding programs. PMID:27755575

Anomalous aspects of magnetosheath flow and of the shape and oscillations of the magnetopause during an interval of strongly northward interplanetary magnetic field

NASA Technical Reports Server (NTRS)

Chen, Sheng-Hsien; Kivelson, Margaret G.; Gosling, Jack T.; Walker, Raymond T.; Lazarus, Allan J.

1992-01-01

On 15 Feb. 1978, the orientation of the interplanetary magnetic field (IMF) remained steadily northward for more than 12 hours. The ISEE 1 and 2 spacecraft were located near apogee on the dawn side flank of the magnetotail. IMP 8 was almost symmetrically located in the magnetosheath on the dusk flank and IMP 7 was upstream in the solar wind. Using plasma and magnetic field data, we show the following: (1) the magnetosheath flow speed on the flanks of the magnetotail steadily exceeded the solar wind speed by 20 percent; (2) surface waves with approximately a 5-min period and very non-sinusoidal waveform were persistently present on the dawn magnetopause and waves of similar period were present in the dusk magnetosheath; and (3) the magnetotail ceased to flare at an antisunward distance of 15 R(sub E). We propose that the acceleration of the magnetosheath flow is achieved by magnetic tension in the draped field configuration for northward IMF and that the reduction of tail flaring is consistent with a decreased amount of open magnetic flux and a larger standoff distance of the subsolar magnetopause. Results of a three-dimensional magnetohydrodynamic simulation support this phenomenological model.

Mapping of a dominant rust resistance gene revealed two R genes around the major Rust_QTL in cultivated peanut (Arachis hypogaea L.).

PubMed

Mondal, Suvendu; Badigannavar, Anand M

2018-05-09

A consensus rust QTL was identified within a 1.25 cM map interval of A03 chromosome in cultivated peanut. This map interval contains a TIR-NB-LRR R gene and four pathogenesis-related genes. Disease resistance in plants is manifested due to the specific interaction between the R gene product and its cognate avirulence gene product (AVR) in the pathogen. Puccinia arachidis Speg. causes rust disease and inflicts economic damages to peanut. Till now, no experimental evidence is known for the action of R gene in peanut for rust resistance. A fine mapping approach towards the development of closely linked markers for rust resistance gene was undertaken in this study. Phenotyping of an RIL population at five environments for field rust score and subsequent QTL analysis has identified a 1.25 cM map interval that harbored a consensus major Rust_QTL in A03 chromosome. This Rust_QTL is flanked by two SSR markers: FRS72 and SSR_GO340445. Both the markers clearly identified strong association of the mapped region with rust reaction in both resistant and susceptible genotypes from a collection of 95 cultivated peanut germplasm. This 1.25 cM map interval contained 331.7 kb in the physical map of A. duranensis and had a TIR-NB-LRR category R gene (Aradu.Z87JB) and four glucan endo-1,3 β glucosidase genes (Aradu.RKA6 M, Aradu.T44NR, Aradu.IWV86 and Aradu.VG51Q). Another resistance gene analog was also found in the vicinity of mapped Rust_QTL. The sequence between SSR markers, FRS72 and FRS49, contains an LRR-PK (Aradu.JG217) which is equivalent to RHG4 in soybean. Probably, the protein kinase domain in AhRHG4 acts as an integrated decoy for the cognate AVR from Puccinia arachidis and helps the TIR-NB-LRR R-protein to initiate a controlled program cell death in resistant peanut plants.

Diet soda intake is associated with long-term increases in waist circumference in a biethnic cohort of older adults: the San Antonio Longitudinal Study of Aging.

PubMed

Fowler, Sharon P G; Williams, Ken; Hazuda, Helen P

2015-04-01

To examine the relationship between diet soda (DS) intake (DSI) and long-term waist circumference (WC) change (ΔWC) in the biethnic San Antonio Longitudinal Study of Aging (SALSA). Prospective cohort study. San Antonio, Texas, neighborhoods. SALSA examined 749 Mexican-American and European-American individuals aged 65 and older at baseline (baseline, 1992-96); 474 (79.1%) survivors completed follow-up 1 (FU1, 2000-01), 413 (73.4%) completed FU2 (2001-03), and 375 (71.0%) completed FU3 (2003-04). Participants completed a mean of 2.64 follow-up intervals, for 9.4 total follow-up years. DSI, WC, height, and weight were measured at outset and at the conclusion of each interval: baseline, FU1, FU2, and FU3. Adjusted for initial WC, demographic characteristics, physical activity, diabetes mellitus, and smoking, mean interval ΔWC of DS users (2.11 cm, 95% confidence interval (CI) = 1.45-2.76 cm) was almost triple that of nonusers (0.77 cm, 95% CI = 0.29-1.23 cm) (P < .001). Adjusted interval ΔWCs were 0.77 cm (95% CI = 0.29-1.23 cm) for nonusers, 1.76 cm (95% CI = 0.96-2.57 cm) for occasional users, and 3.04 cm (95% CI = 1.82-4.26 cm) for daily users (P = .002 for trend). This translates to ΔWCs of 0.80 inches for nonusers, 1.83 inches for occasional users, and 3.16 for daily users over the total SALSA follow-up. In subanalyses stratified for selected covariates, ΔWC point estimates were consistently higher in DS users. In a striking dose-response relationship, increasing DSI was associated with escalating abdominal obesity, a potential pathway for cardiometabolic risk in this aging population. © 2015, Copyright the Authors Journal compilation © 2015, The American Geriatrics Society.

Aerobic Mesophilic, Coliform, Escherichia coli, and Staphylococcus aureus Counts of Raw Meat from the Formal and Informal Meat Sectors in South Africa

PubMed Central

Muchenje, Voster

2018-01-01

Foodborne disease (FBD) is a global public health concern, and foods from animal sources have been associated with outbreaks of food-related illness. In this study, animal carcasses from the two abattoirs (HT1 and HT2) in the formal meat sector (FMS) and slaughter points in the informal meat sector (INMS) were examined at two stages of slaughter (before washing and after washing) for aerobic colony counts (ACC) and total viable count (TCC), as well as Escherichia coli and Staphylococcus aureus count. At each stage, carcasses were sampled by swabbing at the neck, brisket, flank, and rump. ACC for beef, mutton, and pork carcasses at HT1 and HT2 before washing were between 2.5–5.8, 2.2–4.7, and 2.7–3.7 mean log CFU/cm2, respectively, and TCC count before washing was highest on the neck of cattle (6.3 ± 2.4) and after washing was highest on the perineal of sheep (5.7 ± 6.9). In the INMS, TCC count was highest on the brisket (6.9 ± 3.2) and in the neck (5.5 ± 2.4). Higher ACC values of 6.2–6.7 mean log CFU/cm2 were obtained in the INMS. The highest count for E. coli (4.2 mean log CFU/cm2) after washing was in the neck, while the highest count for S. aureus (4.0 mean log CFU/cm2) was in the flank. All bacteria count in the INMS exceeded acceptable limits, and washing did not significantly reduce microbial load in meat in the FMS and INMS. Bacteria count in the FMS and INMS exceeded acceptable standards. However, meat processed in the INMS poses a more significant risk of FBD to consumers. PMID:29690529

Baroclinic flows, transports, and kinematic properties in a cyclonic-anticyclonic-cyclonic ring triad in the Gulf of Mexico

NASA Astrophysics Data System (ADS)

Vidal, VíCtor M. V.; Vidal, Francisco V.; HernáNdez, Abel F.; Meza, Eustorgio; PéRez-Molero, José M.

1994-04-01

During October-November 1986 the baroclinic circulation of the central and western Gulf of Mexico was dominated by an anticyclonic ring that was being bisected by two north and south flanking cyclonic rings. The baroclinic circulation revealed a well-defined cyclonic-anticyclonic-cyclonic triad system. The anticyclone's collision against the western gulf continental slope at 22.5°N, 97°W originated the north and south flanking cyclonic rings. The weakening of the anticyclone's relative vorticity, during the collision, was compensated by along-shelf north (26 cm s-1) and south (58 cm s-1) jet currents and by the anticyclone's flanking water mass's gain of cyclonic vorticity from lateral shear contributed by east (56 cm s-1) and west (42 cm s-1) current jets with individual mass transports of ˜18 Sv. Within the 0-1000 and 0-500 dbar layers and across 96°W the magnitudes of the colliding westward transports were 17.80 and 8.59 Sv, respectively. These corresponding transports were 85 and 94% balanced by along-shelf jet currents north and south of the anticyclone's collision zone. This indicates that only minor amounts (<15%) of the anticyclone's colliding westward transports might have flowed into the western gulf's continental shelf water mass or else they sank into deeper water along the continental slope during the anticyclone's collision event. The resultant effect of the coupled interaction between the anticyclone and the cyclonic pair was the surging of the water mass in the cyclones and its sinking in the anticyclone. This mechanism controlled the magnitude, direction, location of vertical advection, and transfer of kinetic energy from the upper to the deeper water layers. Our vertical transport estimates through the 1000-m-depth surface revealed a net vertical descending transport of 0.4 Sv for the ring triad system. This mass flux occurred primordially within the south central gulf region and most likely constituted a principal mechanism that propelled the gulf's deep horizontal circulation. The volume renewal time is ˜5 years for the ring triad system within 0-1000 dbar. The volume renewal time for the gulf's deep water layer (2000-3000 dbar), estimated as a function of its horizontal outflowing mass flux (1.96 Sv), is of the same order of magnitude and reveals that the deeper layer of the Gulf of Mexico is as well ventilated as its upper layer (0-1000 dbar). The ring triad's surface kinematic properties were derived from the sea surface baroclinic circulation field referenced to 500 dbar. Within this layer, individual ring geometries were conserved. Maximum tangential ring velocities were 60 and 58 cm s-1, for the north and south cyclones respectively, and 30 cm s-1 for the anticyclone. The corresponding periods of revolution were 16, 19, and 26 days, and vertical velocities calculated at the rings' peripheries, where maximum horizontal divergence was encountered, were 1.5, 1.0, and -1.0 m d-1.

Seismic hazards at Kilauea and Mauna Loa volcanoes, Hawaii

NASA Astrophysics Data System (ADS)

Klein, Fred W.

1994-04-01

A significant seismic hazard exists in south Hawaii from large tectonic earthquakes that can reach magnitude 8 and intensity XII. This paper quantifies the hazard by estimating the horizontal peak ground acceleration (PGA) in south Hawaii which occurs with a 90% probability of not being exceeded during exposure times from 10 to 250 years. The largest earthquakes occur beneath active, unbuttressed and mobile flanks of volcanos in their shield building stage. The flanks are compressed and pushed laterally by rift zone intrusions. The largest earthquakes are thus not directly caused by volcanic activity. Historic earthquakes (since 1823) and the best Hawaiian Volcano Observatory catalog (since 1970) under the south side of the island define linear frequency-magnitude distributions that imply average recurrence intervals for M greater than 5.5 earthquakes of 3.4-5 years, for M greater than 7 events of 29-44 years, and for M greater than 8 earthquakes of 120-190 years. These estimated recurrences are compatable with the 107 year interval between the two major April 2, 1868 (M(approximately)7.9) and November 29, 1975 (M=7.2) earthquakes. Frequency-magnitude distributions define the activity levels of 19 different seismic source zones for probabilistic ground motion estimations. The available measurements of PGA (33 from 7 moderate earthquakes) are insufficient to define a new attenuation curve. We use the Boore et al. (1993) curve shifted upward by a factor of 1.2 to fit Hawaiian data. Amplification of sites on volcanic ash or unconsolidated soil are about two times those of hard lava sites. On a map for a 50 year exposure time with a 90% probability of not being exceeded, the peak ground accelerations are 1.0 g Kilauea's and Mauna Loa's mobile south flanks and 0.9 g in the Kaoiki seismic zone. This hazard from strong ground shaking is comparable to that near the San Andreas Fault in California or the subduction zone in the Gulf of Alaska.

A physical map, including a BAC/PAC clone contig, of the Williams-Beuren syndrome--deletion region at 7q11.23.

PubMed

Peoples, R; Franke, Y; Wang, Y K; Pérez-Jurado, L; Paperna, T; Cisco, M; Francke, U

2000-01-01

Williams-Beuren syndrome (WBS) is a developmental disorder caused by haploinsufficiency for genes in a 2-cM region of chromosome band 7q11.23. With the exception of vascular stenoses due to deletion of the elastin gene, the various features of WBS have not yet been attributed to specific genes. Although >/=16 genes have been identified within the WBS deletion, completion of a physical map of the region has been difficult because of the large duplicated regions flanking the deletion. We present a physical map of the WBS deletion and flanking regions, based on assembly of a bacterial artificial chromosome/P1-derived artificial chromosome contig, analysis of high-throughput genome-sequence data, and long-range restriction mapping of genomic and cloned DNA by pulsed-field gel electrophoresis. Our map encompasses 3 Mb, including 1.6 Mb within the deletion. Two large duplicons, flanking the deletion, of >/=320 kb contain unique sequence elements from the internal border regions of the deletion, such as sequences from GTF2I (telomeric) and FKBP6 (centromeric). A third copy of this duplicon exists in inverted orientation distal to the telomeric flanking one. These duplicons show stronger sequence conservation with regard to each other than to the presumptive ancestral loci within the common deletion region. Sequence elements originating from beyond 7q11.23 are also present in these duplicons. Although the duplicons are not present in mice, the order of the single-copy genes in the conserved syntenic region of mouse chromosome 5 is inverted relative to the human map. A model is presented for a mechanism of WBS-deletion formation, based on the orientation of duplicons' components relative to each other and to the ancestral elements within the deletion region.

Resistivity Surveys on the Mauna Kea Saddle: Implications for groundwater resources on the Island of Hawaii

NASA Astrophysics Data System (ADS)

Thomas, D. M.; Pierce, H. A.

2009-12-01

A sequence of Audiomagnetotelluric (AMT) and Magnetotelluric (MT) surveys was recently completed on the Island of Hawaii along a transect spanning the 2000 m high Humu'ula Saddle region bounded by Mauna Kea, Mauna Loa and Hualalai volcanoes. The surveys extended down to an elevation of ~600 m on the eastern flank of the island and to 1,100 m on the drier, western slope of Mauna Kea and were intended to define the depth to the local groundwater table across the interior of the island. The results of the surveys present a much more complicated picture of the interior structure, and associated hydrology, of the island than has generally been assumed. At the eastern end of the transect, where existing wells unequivocally define the depth to the water table, young Mauna Kea basalts saturated with freshwater yielded a resistivity of ~600 ohm-meters. At increasing elevations toward the west, where rainfall rates decline markedly, the resistivity/depth profiles are consistent with progressively drier, resistive rocks to depths approaching 1000 m below the surface. These are underlain by well-defined, moderately resistive zones consistent with freshwater saturated basalts. As the transect approaches an inferred southeasterly-trending rift zone near the crest of the Saddle, the moderately resistive intervals are underlain by less resistive rocks near sea level that fall into the range expected for either (cold) saltwater or heated freshwater. Near the center of the transect, freshwater resistivity values extend to elevations of ~1000 m above sea level and are, again, underlain by significantly less resistive intervals near sea level. We believe that the moderately resistive intervals reflect substantial quantities of freshwater that are bounded by rift systems of Mauna Kea and Hualalai and the northern flank of Mauna Loa. The unexpectedly low resistivity values near sea level are considered to more probably reflect leakage of thermal fluids from the interior of Mauna Kea rather than saltwater intrusion from below the freshwater system. Alternatively, the less resistive formations may be the result of hydrothermal alteration from now-extinct geothermal leakage from Mauna Kea. The presence of freshwater to 1000 m above sea level within the Mauna Kea flanks, if confirmed by planned drilling, will increase estimates of groundwater storage within the island by as much as a factor of ten above those projected by traditional ocean island groundwater models.

Celestine-bearing geodes from Wayne and Emery counties, southeastern Utah: Genesis and mineralogy

USGS Publications Warehouse

Kile, Daniel E.; Dayvault, Richard D.; Hood, William C.; Hatch, H. Steven

2015-01-01

Geodes containing celestine with associated quartz, calcite, chlorite, and other minerals occur in the Jurassic Curtis Formation of Emery and Wayne counties off the east and south flanks of the San Rafael Swell in southeastern Utah. The two areas discussed in this article produce geodes to 25 cm wide containing bladed to tabular celestine crystals that are as much as 4.5 cm in length. An evaporative littoral system resulting in the formation of anhydrite nodules is proposed as the initial environment for this deposit. Subsequent silicification of the nodules and, in some cases, the formation of hollow spaces within the silicified nodules, provided a geode structure for the eventual crystallization of celestine and associated minerals.

Glacial-interglacial variations in sediment organic carbon accumulation and benthic foraminiferal assemblages on the Bermuda Rise (ODP Site 1063) during MIS 13 to 10

NASA Astrophysics Data System (ADS)

Poli, Maria Serena; Meyers, Philip A.; Thunell, Robert C.; Capodivacca, Marco

2012-09-01

We have determined organic carbon concentrations and isotopic compositions and benthic foraminiferal assemblages in sediments deposited between ˜500 and 340 ka at ODP Site 1063 on the northeastern flank of the Bermuda Rise. This time interval includes Marine Isotope Stage (MIS) 11, a particularly warm and long interglacial that was similar to today, and MIS 12, one of the most severe glacials of the last 600 kyr. During MIS 11.3, the peak of interglacial warming, organic carbon accumulation rates are low and benthic foraminiferal assemblages are dominated by Nuttallides umbonifera, a species indicative of oligotrophic environments. Higher accumulation rates during MIS 12 and 10 correspond with elevated sedimentation rates (33-36 cm/kyr). This pattern implies a combination of enhanced delivery and improved preservation of sediment organic matter during these glacial times. Organic δ13C values are less negative during MIS 12 and MIS 10 than during MIS 11, which is consistent with greater glacial-stage marine productivity. High relative abundances ofOridorsalis umbonatus during glacial intervals probably records a low but sustained flux of highly degraded organic material. Large, recurrent fluctuations in the abundance of Epistominella exiguaat the beginnings of the MIS 12 and MIS 10 glaciations suggest a marked increase in local phytoplankton blooms at these times and consequent delivery of phytodetritus to the seafloor. The most likely causes of these variations are changes in the position and strength of the Gulf Stream and its associated cold-ring eddies, combined with increased advection of terrigenous sediments from northerly locations during glacial lowstands.

A novel gene encoding a TIG multiple domain protein is a positional candidate for autosomal recessive polycystic kidney disease.

PubMed

Xiong, Huaqi; Chen, Yongxiong; Yi, Yajun; Tsuchiya, Karen; Moeckel, Gilbert; Cheung, Joseph; Liang, Dan; Tham, Kyi; Xu, Xiaohu; Chen, Xing-Zhen; Pei, York; Zhao, Zhizhuang Jeo; Wu, Guanqing

2002-07-01

Autosomal recessive polycystic kidney disease (ARPKD) is a common hereditary renal cystic disease in infants and children. By genetic linkage analyses, the gene responsible for this disease, termed polycystic kidney and hepatic disease 1 (PKHD1), was mapped on human chromosome 6p21.1-p12, and has been further localized to a 1-cM genetic interval flanked by the D6S1714/D6S243 (telomeric) and D6S1024 (centromeric) markers. We recently identified a novel gene in this genetic interval from kidney cDNA, using cloning strategies. The gene PKHD1 (PKHD1-tentative) encodes a novel 3396-amino-acid protein with no apparent homology with any known proteins. We named its gene product "tigmin" because it contains multiple TIG domains, which usually are seen in proteins containing immunoglobulin-like folds. PKHD1 encodes an 11.6-kb transcript and is composed of 61 exons spanning an approximately 365-kb genomic region on chromosome 6p12-p11.2 adjacent to the marker D6S1714. Northern blot analyses demonstrated that the gene has discrete bands with one peak signal at approximately 11 kb, indicating that PKHD1 is likely to have multiple alternative transcripts. PKHD1 is highly expressed in adult and infant kidneys and weakly expressed in liver in northern blot analysis. This expression pattern parallels the tissue involvement observed in ARPKD. In situ hybridization analysis further revealed that the expression of PKHD1 in the kidney is mainly localized to the epithelial cells of the collecting duct, the specific tubular segment involved in cyst formation in ARPKD. These features of PKHD1 make it a strong positional candidate gene for ARPKD.

Observations of ebb flows on tidal flats: Evidence of dewatering?

NASA Astrophysics Data System (ADS)

Rinehimer, J. P.; Thomson, J. M.; Chickadel, C.

2010-12-01

Incised channels are a common morphological feature of tidal flats. When the flats are inundated, flows are generally forced by the tidally varying sea surface height. During low tide, however, these channels continue to drain throughout flat exposure even without an upstream source of water. While the role of porewater is generally overlooked due to the low permeability of marine muds, it remains the only potential source of flows through the channels during low tide. In situ and remotely sensed observations (Figure 1) at an incised channel on a tidal flat in Willapa Bay from Spring 2010 indicate that dewatering of the flats may be driving these low tide flows. High resolution Aquadopp ADCP velocity profiles are combined with observations from tower-based infrared (IR) video to produce a complete time series of surface velocity measurements throughout low tide. The IR video observations provide a measurement of surface currents even when the channel depth is below the blanking distance of the ADCP (10 cm). As the depth within the channel drops from 50 cm to 10 cm surface velocities increase from 10 cm/s to 60 cm/s even as the tide level drops below the channel flanks and the flats are dry. As the drainage continues, the temperature of the flow rises throughout low tide, mirroring temperatures within the sediment bed on the tidal flat. Drainage salinity falls despite the lack of any freshwater input to the flat indicating that less saline porewater may be the source. The likely source of the drainage water is from the channel flanks where time-lapse video shows slumping and compaction of channel sediments. Velocity profiles, in situ temperatures, and IR observations also are consistent with the presence of fluid muds and a hyperpycnal, density driven outflow at the channel mouth highlighting a possible pathway for sediment delivery from the flats to the main distributary channels of the bay. Figure 1: Time series of tidal flat channel velocities and temperatures. Top: (soild) Water depth within the channel and (dashed) tidal flat elevation. Center: Channel surface velocities as measured by an (black) ADCP and (red) a Fourier technique using infrared video. Bottom: Temperatures of (blue) near bed water downstream of the incised channel, (black) channel outflow, and (red) tidal flat sediment at 10 cm depth within the bed.

Differential compaction influences on structure in West Cameron Block 225 field

DOE Office of Scientific and Technical Information (OSTI.GOV)

Finley, W.R.

The concept to be illustrated here is the influence on structural configuration of differential compaction caused by lateral variations in stratigraphy, specifically, changes from sand to shale within the same stratigraphic interval, The example chosen to illustrate this concept is West Cameron Block 225 field. As seen in structural stratigraphic cross sections as well as net sand maps constructed in the example field, several channel sands are seen to strongly influence the structural configuration. The basic structure within the field as defined by well and seismic data consists of a gentle, southerly dipping, north south-oriented ridge, bounded by a down-to-the-eastmore » fault on the west flank and a down-to-the-south fault to the north. Gentle roll into these faults closes the north flank of the structure. The stratigraphic section consists of alternating sands and shales of Miocene and Pliocene age. Several of these sands map out as linear sand bodies interpreted to be channels. These channels, representing thickened sand bodies that grade laterally into predominantly shale facies, are oriented in a general east-west direction. The juxtaposition of the basic structural orientation with the orientation of the channel sand(s) sets up a crossing point(s) on the southern flank of the structure. With the advent of differential compaction between the channel sands and the bounding shale faces, a stratigraphic structure is generated. This resulting compaction structure maps out as a double-lobed or saddled high. This effect is amplified as channels in the shallower section stack out over the southern flank of the structure until the southern crest dominates over the northern one. The overall result is one of migrating structural crests caused by variations in compactibility within the stratigraphic section.« less

Gaussian process regression for tool wear prediction

NASA Astrophysics Data System (ADS)

Kong, Dongdong; Chen, Yongjie; Li, Ning

2018-05-01

To realize and accelerate the pace of intelligent manufacturing, this paper presents a novel tool wear assessment technique based on the integrated radial basis function based kernel principal component analysis (KPCA_IRBF) and Gaussian process regression (GPR) for real-timely and accurately monitoring the in-process tool wear parameters (flank wear width). The KPCA_IRBF is a kind of new nonlinear dimension-increment technique and firstly proposed for feature fusion. The tool wear predictive value and the corresponding confidence interval are both provided by utilizing the GPR model. Besides, GPR performs better than artificial neural networks (ANN) and support vector machines (SVM) in prediction accuracy since the Gaussian noises can be modeled quantitatively in the GPR model. However, the existence of noises will affect the stability of the confidence interval seriously. In this work, the proposed KPCA_IRBF technique helps to remove the noises and weaken its negative effects so as to make the confidence interval compressed greatly and more smoothed, which is conducive for monitoring the tool wear accurately. Moreover, the selection of kernel parameter in KPCA_IRBF can be easily carried out in a much larger selectable region in comparison with the conventional KPCA_RBF technique, which helps to improve the efficiency of model construction. Ten sets of cutting tests are conducted to validate the effectiveness of the presented tool wear assessment technique. The experimental results show that the in-process flank wear width of tool inserts can be monitored accurately by utilizing the presented tool wear assessment technique which is robust under a variety of cutting conditions. This study lays the foundation for tool wear monitoring in real industrial settings.

Improving the Cost-Effectiveness of Visual Devices for the Control of Riverine Tsetse Flies, the Major Vectors of Human African Trypanosomiasis

PubMed Central

Esterhuizen, Johan; Rayaisse, Jean Baptiste; Tirados, Inaki; Mpiana, Serge; Solano, Philippe; Vale, Glyn A.; Lehane, Michael J.; Torr, Stephen J.

2011-01-01

Control of the Riverine (Palpalis) group of tsetse flies is normally achieved with stationary artificial devices such as traps or insecticide-treated targets. The efficiency of biconical traps (the standard control device), 1×1 m black targets and small 25×25 cm targets with flanking nets was compared using electrocuting sampling methods. The work was done on Glossina tachinoides and G. palpalis gambiensis (Burkina Faso), G. fuscipes quanzensis (Democratic Republic of Congo), G. f. martinii (Tanzania) and G. f. fuscipes (Kenya). The killing effectiveness (measured as the catch per m2 of cloth) for small targets plus flanking nets is 5.5–15X greater than for 1 m2 targets and 8.6–37.5X greater than for biconical traps. This has important implications for the costs of control of the Riverine group of tsetse vectors of sleeping sickness. PMID:21829743

Ultrasonography of the liver and kidneys of healthy camels (Camelus dromedarius).

PubMed

Tharwat, Mohamed; Al-Sobayil, Fahd; Ali, Ahmed; Buczinski, Sébastien

2012-12-01

This study describes the ultrasonography of the liver and kidneys of healthy camels (Camelus dromedarius). Images of the liver were obtained from the 11th to 5th intercostal spaces (ICSs). The distance between the dorsal liver margin and the midline of the back was shortest (39.1 ± 7.4 cm) at the 11th ICS and increased cranially to 5th ICS. The size of the liver was largest at the 9th ICS and smallest at the 5th ICS. In 6 camels the right kidney was visualized from the 10th and 11th ICSs and upper right flank and in the 10th and 11th ICSs in the remaining 16 camels. In all camels, the left kidney was imaged from the caudal left flank. In 21 camels, the differentiation between the renal cortex and medulla was clearly visible in the ultrasonograms. Ultrasonographic description of the liver and kidneys provides a basic reference for diagnosing hepatic and renal disorders in camels.

Ultrasonography of the liver and kidneys of healthy camels (Camelus dromedarius)

PubMed Central

Tharwat, Mohamed; Al-Sobayil, Fahd; Ali, Ahmed; Buczinski, Sébastien

2012-01-01

This study describes the ultrasonography of the liver and kidneys of healthy camels (Camelus dromedarius). Images of the liver were obtained from the 11th to 5th intercostal spaces (ICSs). The distance between the dorsal liver margin and the midline of the back was shortest (39.1 ± 7.4 cm) at the 11th ICS and increased cranially to 5th ICS. The size of the liver was largest at the 9th ICS and smallest at the 5th ICS. In 6 camels the right kidney was visualized from the 10th and 11th ICSs and upper right flank and in the 10th and 11th ICSs in the remaining 16 camels. In all camels, the left kidney was imaged from the caudal left flank. In 21 camels, the differentiation between the renal cortex and medulla was clearly visible in the ultrasonograms. Ultrasonographic description of the liver and kidneys provides a basic reference for diagnosing hepatic and renal disorders in camels. PMID:23729824

Buccal mucosal graft onlay repair for a ureteric ischemic injury following a pyeloplasty.

PubMed

Agrawal, Vipul; Dassi, Vimal; Andankar, Mukund G

2010-01-01

A 38-year-old female presented with long stricture in the left upper ureter following a pyeloplasty causing persistent flank pain. A left PCNL with an antegrade endopyelotomy was attempted in view of a concomitant left renal 1.5 cm calculus in the lower calyx but it failed. Subsequently, a buccal mucosal onlay graft was applied on the strictured ureter. Follow-up at 3 months showed good uptake of the graft with patent passage for urine drainage.

Geologic constraints to fluid flow in the Jurassic Arab D reservoir, eastern Saudi Arabia

DOE Office of Scientific and Technical Information (OSTI.GOV)

Laing, J.E.

1991-08-01

A giant oil field located in eastern Saudi Arabia has produced several billion barrels of 37{degree} API oil from fewer than 100 wells. The Upper Jurassic Arab Formation is the main producing unit, and is made up of a series of upward-shoaling carbonate and anhydrite members. Porous carbonates of the Arab D member make up the principle oil reservoir, and overlying Arab D anhydrite provides the seal. Principal reservoir facies are stromatoporoid-coral and skeletal grainstones. Reservoir drive is currently provided by flank water injection. Despite more than 30 years of flank water injection (1.5 billion bbl) into the northern areamore » of the field, a thick oil column remains in the Arab D reservoir. Geological factors which affect fluid flow in this area are (1) a downdip facies change from permeable skeletal-stromatoporoid limestone to less permeable micritic limestone, (2) vertical permeability barriers resulting from shoaling-upward cycles, (3) a downdip tar mat, (4) dolomite along the flanks in the upper portion of the reservoir, (5) highly permeable intervals within the skeletal-stromatoporoid limestone, and (6) an updip, north to south facies change from predominantly stromatoporoid-coral grainstone to skeletal grainstone. These factors are considered in reservoir modeling, simulation studies, and planning locations for both water injection and producer wells.« less

Submarine geology of the Hilina slump and morpho-structural evolution of Kilauea volcano, Hawaii

NASA Astrophysics Data System (ADS)

Smith, John R.; Malahoff, Alexander; Shor, Alexander N.

1999-12-01

Marine geophysical data, including SEA BEAM bathymetry, HAWAII MR1 sidescan, and seismic reflection profiles, along with recent robot submersible observations and samples, were acquired over the offshore continuation of the mobile Kilauea volcano south flank. This slope comprises the three active hot spot volcanoes Mauna Loa, Kilauea, and Loihi seamount and is the locus of the Hawaiian hot spot. The south flank is the site of frequent low-intensity seismicity as well as episodic large-magnitude earthquakes. Its sub-aerial portion creeps seaward at a rate of approximately 10 cm/year. The Hilina slump is the only large submarine landslide in the Hawaiian Archipelago thought to be active, and this study is one of the first to more highly resolve submarine slide features there. The slump is classified into four distinct zones from nearshore to the island's base. Estimates of size based on these data indicate a slumped area of 2100 km 2 and a volume of 10,000-12,000 km 3, equivalent to about 10% of the entire island edifice. The overall picture gained from these data sets is one of mass wasting of the neovolcanic terrain as it builds upward and seaward, though reinforcement by young and pre-Hawaii seamounts adjacent to the pedestal is apparent. Extensive lava delta deposits are formed by hyaloclastites and detritus from recent lava flows into the sea. These deposits dominate the upper submarine slope offshore of Kilauea, with pillow breccia revealed at mid-depths. Along the lower flanks, massive outcrops of volcanically derived sedimentary rocks were found underlying Kilauea, thus necessitating a rethinking of previous models of volcanic island development. The morphologic and structural evolutionary model for Kilauea volcano and the Hilina slump proposed here attempts to incorporate this revelation. A hazard assessment for the Hilina slump is presented where it is suggested that displacement of the south flank to date has been restrained by a still developing northeast lateral submarine boundary. When it does fully mature, the south flank may be more subject to land slips triggered by large, long duration earthquakes and thus Kilauea may undergo more frequent episodes of failure with increased displacements.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Doug Blankenship

Archive of ArcGIS data from the West Flank FORGE site located in Coso, California. Archive contains the following eight shapefiles: Polygon of the 3D geologic model (WestFlank3DGeologicModelExtent) Polylines of the traces 3D modeled faults (WestFlank3DModeledFaultTraces) Polylines of the fault traces from Duffield and Bacon, 1980 (WestFlankFaultsfromDuffieldandBacon) Polygon of the West Flank FORGE site (WestFlankFORGEsite) Polylines of the traces of the geologic cross-sections (cross-sections in a separate archive in the GDR) (WestFlankGeologicCrossSections) Polylines of the traces of the seismic reflection profiles through and adjacent to the West Flank site (seismic reflection profiles in a separate archive in the GDR) (WestFlankSiesmicReflectionProfiles) Pointsmore » of the well collars in and around the West Flank site (WestFlankWellCollars) Polylines of the surface expression of the West Flank well paths (WestFlankWellPaths)« less

Genetic and Functional Evidence Supports LPAR1 as a Susceptibility Gene for Hypertension.

PubMed

Xu, Ke; Ma, Lu; Li, Yang; Wang, Fang; Zheng, Gu-Yan; Sun, Zhijun; Jiang, Feng; Chen, Yundai; Liu, Huirong; Dang, Aimin; Chen, Xi; Chun, Jerold; Tian, Xiao-Li

2015-09-01

Essential hypertension is a complex disease affected by genetic and environmental factors and serves as a major risk factor for cardiovascular diseases. Serum lysophosphatidic acid correlates with an elevated blood pressure in rats, and lysophosphatidic acid interacts with 6 subtypes of receptors. In this study, we assessed the genetic association of lysophosphatidic acid receptors with essential hypertension by genotyping 28 single-nucleotide polymorphisms from genes encoding for lysophosphatidic acid receptors, LPAR1, LPAR2, LPAR3, LPAR4, LPAR5, and LPAR6 and their flanking sequences, in 3 Han Chinese cohorts consisting of 2630 patients and 3171 controls in total. We identified a single-nucleotide polymorphism, rs531003 in the 3'-flanking genomic region of LPAR1, associated with hypertension (the Bonferroni corrected P=1.09×10(-5), odds ratio [95% confidence interval]=1.23 [1.13-1.33]). The risk allele C of rs531003 is associated with the increased expression of LPAR1 and the susceptibility of hypertension, particularly in those with a shortage of sleep (P=4.73×10(-5), odds ratio [95% confidence interval]=1.75 [1.34-2.28]). We further demonstrated that blood pressure elevation caused by sleep deprivation and phenylephrine-induced vasoconstriction was both diminished in LPAR1-deficient mice. Together, we show that LPAR1 is a novel susceptibility gene for human essential hypertension and that stress, such as shortage of sleep, increases the susceptibility of patients with risk allele to essential hypertension. © 2015 American Heart Association, Inc.

Inspection of Alpine glaciers with cosmic-ray muon radiography

NASA Astrophysics Data System (ADS)

Nishiyama, Ryuichi; Ariga, Akitaka; Ariga, Tomoko; Ereditato, Antonio; Lechmann, Alessandro; Mair, David; Scampoli, Paola; Schlunegger, Fritz; Vladymyrov, Mykhailo

2016-04-01

Radiography using cosmic-ray muons represents a challenging method for probing the bedrock topography beneath Alpine glaciers. We present the current status of our feasibility study at Eiger glacier, situated on the western flank of the Eiger in the Jungfrau region, Central Swiss Alps. The muon radiography is a technique that has been recently developed to investigate the internal density profiles of geoscientific targets. It is based on the measurement of the absorption of the cosmic-ray muons inside a material. Because the energy spectrum of cosmic-ray muons and the energy dependence of muon range have been studied well during the past years, the attenuation of the muon flux can be used to derive the column density, i.e. the density integrated along the muon trajectories, of geoscientific targets. This technique has recently been applied for non-invasive inspection of volcanoes, nuclear reactors, seismic faults, caves and etc. The greatest advantage of the method in the field of glacier studies is that it yields a unique solution of the density underneath a glacier without any assumption of physical properties inside the target. Large density contrasts, as expected between glacier ice (˜ 1.0g/cm3) and bedrock (˜ 2.5g/cm3), would allow us to elucidate the shape of the bedrock in high resolution. Accordingly, this technology will provide for the first time information on the bedrock surface beneath a steep and non-accessible Alpine glacier, in a complementary way with respect to other exploration methods (drilling, ground penetrating radar, seismic survey, gravity explorations and etc.). Our first aim is to demonstrate the feasibility of the method through a case study at the Eiger glacier, situated in the Central Swiss Alps. The Eiger glacier straddles the western flank of the Eiger between 3700 and 2300 m above sea level (a.s.l.). The glacier has shortened by about 150 m during the past 30 years in response to the ongoing global warming, causing a concern for the potential risk of rock fall on the onsite railway. We installed prototype detectors at two sites inside the Jungfrau tunnel crossing the Eiger mountain. The first site is located at 3160 m a.s.l. where the tunnel crosses the eastern flank of the Eiger. There, the thickness of the rock, which muons have to penetrate, ranges from 600 m to 1500 m. The second site is located at 3250 m a.s.l., just beneath the western flank of the Eiger. At this second site, the rock thickness is 300 - 1000 m. We chose emulsion films as muon detectors because they do not require power supply, a clear advantage in the harsh mountain environmental conditions. The effective area of the detectors is 1000cm2 for both sites. The foreseen exposure time will be 2 to 3 months. After this prototype experiment, we will install larger detectors in several sites in the tunnel. The stereo observation would make it possible to reconstruct the three-dimensional shape of the bedrock beneath the Eiger glacier.

Accurate formula for gaseous transmittance in the infrared.

PubMed

Gibson, G A; Pierluissi, J H

1971-07-01

By considering the infrared transmittance model of Zachor as the equation for an elliptic cone, a quadratic generalization is proposed that yields significantly greater computational accuracy. The strong-band parameters are obtained by iterative nonlinear, curve-fitting methods using a digital computer. The remaining parameters are determined with a linear least-squares technique and a weighting function that yields better results than the one adopted by Zachor. The model is applied to CO(2) over intervals of 50 cm(-1) between 550 cm(-1) and 9150 cm(-1) and to water vapor over similar intervals between 1050 cm(-1) and 9950 cm(-1), with mean rms deviations from the original data being 2.30 x 10(-3) and 1.83 x 10(-3), respectively.

Sedimentological characteristics of lake sediment of the Lake Jelonek (North Poland)

NASA Astrophysics Data System (ADS)

Kramkowski, Mateusz; Filbrandt-Czaja, Anna; Ott, Florian; Słowiński, Michał; Tjallingii, Rik; Błaszkiewicz, Mirosław; Brauer, Achim

2016-04-01

Lake Jelonek is located in Northern Poland (53°45'58N, 18°23'30E). The lake is surrounded by forest, covers an area of 19,9 ha and has a maximum depth of 13,8 m. In 2013 and 2014 three overlapping and parallel series of long sediment cores JEL14-A-(1445 cm), JEL14-B-(1430 cm), JEL14-C-(1435 cm) and seven short gravity cores JEL13 (K1-K7) have been recovered from the deepest part of the lake. A continuous composite profile JEL14 covering 1426 cm has been established by correlation based on 28 distinct macroscopic marker layers. The sediment sequence can be divided into 15 (I-XV) lithological units. These units comprise biochemical calcite varves, homogeneous calcite-rich gyttja, homogeneous organic-diatomaceous gyttja, and sandy layers. The chronology established so far is based on 14 AMS 14C dates from terrestrial plant remains and tephrochronology (Askja AD-1875) and covers the interval from the Younger Dryas to present times. Based on the chronology and sedimentological characteristics the composite profile has been correlated to a previous core from which a detailed pollen diagram had been established (Filbrandt-Czaja 2009). Here we present initial results from thin section analyses for two intervals from the new composite record JEL14, (I) the uppermost 0-256 cm and (II) the interval from 768-1296 cm. Intercalated between these two varved interval is a thick section (512 cm) of homogeneous organic-ditomaceous sediments. We present varve micro-facies data in combination with μ-XRF element scanning for comprehensive reconstruction of the sedimentation processes in Lake Jelonek. Preliminary varve counting reveals that the uppermost 256 cm varved sediments comprise ca 925 years (2008-1083 AD), while the lower floating varve interval covers the time period from 1850 - 10500 cal a BP. This study is a contribution to the Virtual Institute of Integrated Climate and Landscape Evolution Analysis -ICLEA- of the Helmholtz Association; grant number VH-VI-415. References: Filbrandt-Czaja, A. 2009: Studia nad historią szaty roślinnej i krajobrazu Borów Tucholskich. pp. Wydawnictwo Naukowe Uniwersytetu Mikołaja Kopernika.

North Pond: a natural observatory for sub-seafloor oxidant supply and metabolic reactions

NASA Astrophysics Data System (ADS)

Ziebis, Wiebke; Ferdelman, Timothy; McManus, James; Muratli, Jesse; Picard, Aude; Schmidt-Schierhorn, Friederike; Stephan, Sebastian; Villinger, Heinrich; Edwards, Katrina J.

2010-05-01

Evidence of upward transport of oxidants from basaltic aquifers to deeply buried sediments has raised questions on microbial respiration and energy cycling within the deep biosphere. Sediment ponds that occur over a vast area of sea floor on the flank of the Mid-Atlantic Ridge maybe ideal observatories to study the role of unsuspected sources of oxidants for sub-seafloor microbial life. The western flank of the Mid-Atlantic Ridge, at 22°45'N is characterized by depressions filled with sediment and surrounded by high relief topography of 7 Ma old basement. The largest depressions are 5 km to 20 km wide and sediment thickness varies but can reach 400 m (Langseth et al. 1992). They are believed to overly recharge zones for the venting of fluids that takes place locally through unsedimented young ocean crust. If we consider the sediments as boundaries overlying the hydrologically active crustal environment, then using profiles of bioactive compounds measured through the sediment layer with the goal to extract information on transport and reactions is an obvious approach to understanding the implications of subsurface transport of oxidants on metabolic activity. Recently obtained deep oxygen profiles obtained during a site survey expedition in February/March of 2009 onboard RV Maria S. Merian to North Pond, one of the larger (70 square km) and best studied sediment ponds, provided proof of this principal. North Pond is the site of the proposed IODP Expedition "677 Mid-Atlantic Microbiology". Investigations included heat-flow, single-channel seismic and bathymetry surveys, as well as gravity coring. Oxygen measurements and pore water sampling (25 cm depth intervals) were performed directly on intact sediment cores, which were subsequently sampled for microbiological analyses, as well as for incubation experiments to test for autotrophic and heterotrophic microbial activity. The entire sediment column down to > 8 m sediment depth contained oxygen. In the central part of the sediment pond oxygen decreased continuously with depth, indicating an active aerobic microbial community, while nitrate concentrations increased. In contrast, along the northern and western rims of North Pond, oxygen concentrations remained surprisingly constant with depth at values around 170 µM. In addition, at 3 locations along the north shore oxygen profiles indicated an upward supply of oxygen from the underlying basaltic basement. Pore water nutrient profiles and incubation experiments confirmed active microbial communities throughout the sediment layer, as well as the influence of upward transport of oxidants on microbial processes in deeply buried sediments. Langseth, M.G., K. Becker, R.P. Von Herzen, and P. Schultheiss. 1992. Heat and fluid flow through sediments on the western flank of the Mid-Atlantic Ridge: A hydrogeological study of North Pond. Geophys. Res. Lett. 19: 517-520.

Fluorescence and photodynamic effects of bacteriochlorin a observed in vivo in 'sandwich' observation chambers.

PubMed Central

van Leengoed, H. L.; Schuitmaker, J. J.; van der Veen, N.; Dubbelman, T. M.; Star, W. M.

1993-01-01

Bacteriochlorin a (BCA), a derivative of bacteriochlorphyll a, is an effective photosensitiser in vitro and in vivo. BCA has a major absorption peak at 760 nm where tissue penetration is optimal. This property, together with rapid tissue clearance promises minor skin photosensitivity. The tissue localising and photodynamic properties of BCA were studied using isogeneic RMA mammary tumours, transplanted into subcutaneous tissue in transparent 'sandwich' observation chambers on the back of WAG/Rij rats. The fluorescence kinetics following an i.v. administration of 20 mg kg-1 BCA was assessed in blood vessels, tumour and normal tissue. Subsequently, the development of vascular- and tissue damage after a therapeutic light dose (760 nm, 600 J cm-2) was observed. Fifteen minutes post injection (p.i.), the fluorescence of BCA in the tumour reached a plateau value of 2.5 times the fluorescence in the normal tissue. From 1 h post injection the tumour fluorescence diminished gradually; after 24 h, the tumour fluorescence signal did not exceed that of the normal tissue. Following photodynamic therapy (PDT), 24 h p.i., complete vascular stasis was observed 2 h post treatment in the tumour only, with subsequent recovery. The presence of viable tumour cells following PDT was assessed by histology and re-transplantation of treated tumour tissue from the chamber into the flank immediately or 7 days after treatment. In both cases tumour regrowth was observed. BCA-PDT (20 mg kg-1, 760 nm, 100 J cm-2) 1 h after BCA administration, an interval which gives the optimal differential between tumour and normal tissue, was sufficient to prevent tumour regrowth. However, this only occurred when re-transplantation was performed 7 days after PDT. During PDT, 1 h p.i., vascular damage in tumour and normal tissue was considerable. Complete vascular shut-down was observed in the tumour 2 h after therapy and in the surrounding tissues at 24 h. Circulation damage was associated with vascular spasm and occlusion probably due to thrombi formation. Oedema was notable, especially following PDT with 600 J cm-2 at 24 h p.i. Images Figure 1 PMID:8494722

Oxytocin (OT) and arginine-vasopressin (AVP) act on OT receptors and not AVP V1a receptors to enhance social recognition in adult Syrian hamsters (Mesocricetus auratus).

PubMed

Song, Zhimin; Larkin, Tony E; Malley, Maureen O'; Albers, H Elliott

2016-05-01

Social recognition is a fundamental requirement for all forms of social relationships. A majority of studies investigating the neural mechanisms underlying social recognition in rodents have investigated relatively neutral social stimuli such as juveniles or ovariectomized females over short time intervals (e.g., 2h). The present study developed a new testing model to study social recognition among adult males using a potent social stimulus. Flank gland odors are used extensively in social communication in Syrian hamsters and convey important information such as dominance status. We found that the recognition of flank gland odors after a 3min exposure lasted for at least 24h, substantially longer than the recognition of other social cues in rats and mice. Intracerebroventricular injections of OT and AVP prolonged the recognition of flank gland odor for up to 48h. Selective OTR but not V1aR agonists, mimicked these enhancing effects of OT and AVP. Similarly, selective OTR but not V1aR antagonists blocked recognition of the odors after 20min. In contrast, the recognition of non-social stimuli was not blocked by either the OTR or the V1aR antagonists. Our findings suggest both OT and AVP enhance social recognition via acting on OTRs and not V1aRs and that the recognition enhancing effects of OT and AVP are limited to social stimuli. Copyright © 2016 Elsevier Inc. All rights reserved.

A Physical Map, Including a BAC/PAC Clone Contig, of the Williams-Beuren Syndrome–Deletion Region at 7q11.23

PubMed Central

Peoples, Risa; Franke, Yvonne; Wang, Yu-Ker; Pérez-Jurado, Luis; Paperna, Tamar; Cisco, Michael; Francke, Uta

2000-01-01

Summary Williams-Beuren syndrome (WBS) is a developmental disorder caused by haploinsufficiency for genes in a 2-cM region of chromosome band 7q11.23. With the exception of vascular stenoses due to deletion of the elastin gene, the various features of WBS have not yet been attributed to specific genes. Although ⩾16 genes have been identified within the WBS deletion, completion of a physical map of the region has been difficult because of the large duplicated regions flanking the deletion. We present a physical map of the WBS deletion and flanking regions, based on assembly of a bacterial artificial chromosome/P1-derived artificial chromosome contig, analysis of high-throughput genome-sequence data, and long-range restriction mapping of genomic and cloned DNA by pulsed-field gel electrophoresis. Our map encompasses 3 Mb, including 1.6 Mb within the deletion. Two large duplicons, flanking the deletion, of ⩾320 kb contain unique sequence elements from the internal border regions of the deletion, such as sequences from GTF2I (telomeric) and FKBP6 (centromeric). A third copy of this duplicon exists in inverted orientation distal to the telomeric flanking one. These duplicons show stronger sequence conservation with regard to each other than to the presumptive ancestral loci within the common deletion region. Sequence elements originating from beyond 7q11.23 are also present in these duplicons. Although the duplicons are not present in mice, the order of the single-copy genes in the conserved syntenic region of mouse chromosome 5 is inverted relative to the human map. A model is presented for a mechanism of WBS-deletion formation, based on the orientation of duplicons' components relative to each other and to the ancestral elements within the deletion region. PMID:10631136

Long-period seismic events with strikingly regular temporal patterns on Katla volcano's south flank (Iceland)

NASA Astrophysics Data System (ADS)

Sgattoni, Giulia; Jeddi, Zeinab; Gudmundsson, Ólafur; Einarsson, Páll; Tryggvason, Ari; Lund, Björn; Lucchi, Federico

2016-09-01

Katla is a threatening volcano in Iceland, partly covered by the Mýrdalsjökull ice cap. The volcano has a large caldera with several active geothermal areas. A peculiar cluster of long-period seismic events started on Katla's south flank in July 2011, during an unrest episode in the caldera that culminated in a glacier outburst. The seismic events were tightly clustered at shallow depth in the Gvendarfell area, 4 km south of the caldera, under a small glacier stream at the southern margin of Mýrdalsjökull. No seismic events were known to have occurred in this area before. The most striking feature of this seismic cluster is its temporal pattern, characterized by regular intervals between repeating seismic events, modulated by a seasonal variation. Remarkable is also the stability of both the time and waveform features over a long time period, around 3.5 years. We have not found any comparable examples in the literature. Both volcanic and glacial processes can produce similar waveforms and therefore have to be considered as potential seismic sources. Discerning between these two causes is critical for monitoring glacier-clad volcanoes and has been controversial at Katla. For this new seismic cluster on the south flank, we regard volcano-related processes as more likely than glacial ones for the following reasons: 1) the seismic activity started during an unrest episode involving sudden melting of the glacier and a jökulhlaup; 2) the glacier stream is small and stagnant; 3) the seismicity remains regular and stable for years; 4) there is no apparent correlation with short-term weather changes, such as rainstorms. We suggest that a small, shallow hydrothermal system was activated on Katla's south flank in 2011, either by a minor magmatic injection or by changes of permeability in a local crack system.

A statistical analysis of flank eruptions on Etna volcano

NASA Astrophysics Data System (ADS)

Mulargia, Francesco; Tinti, Stefano; Boschi, Enzo

1985-02-01

A singularly complete record exists for the eruptive activity of Etna volcano. The time series of occurrence of flank eruptions in the period 1600-1980, in which the record is presumably complete, is found to follow a stationary Poisson process. A revision of the available data shows that eruption durations are rather well correlated with the estimates of the volume of lava flows. This implies that the magnitude of an eruption can be defined directly by its duration. Extreme value statistics are then applied to the time series, using duration as a dependent variable. The probability of occurrence of a very long (300 days) eruption is greater than 50% only in time intervals of the order of 50 years. The correlation found between duration and total output also allows estimation of the probability of occurrence of a major event which exceeds a given duration and total flow of lava. The composite probabilities do not differ considerably from the pure ones. Paralleling a well established application to seismic events, extreme value theory can be profitably used in volcanic risk estimates, provided that appropriate account is also taken of all other variables.

Simultaneous bilateral robotic partial nephrectomy: Case report and critical evaluation of the technique.

PubMed

Giberti, Claudio; Gallo, Fabrizio; Schenone, Maurizio; Cortese, Pierluigi

2014-06-16

We report our first simultaneous bilateral robot assisted partial nephrectomy (RAPN) in order to show and critically discuss the feasibility of this procedure. Materials and methods A 69-year-old male patient visited our department due to incidental finding of bilateral mesorenal small masses (2.5 cm on the right and 3.5 cm on the left) suspicious for malignancy. We started from the right side with patient in flank position. Port placement: 12-mm periumbilical camera port, two 8-mm robotic ports in wide ''V''configuration, additional 12 mm assistant port on the midline between the umbilicus and symphysis pubis. A right unclamping RAPN with sliding clip renorrhaphy was performed. The trocars were removed and the robot undocked. Without interrupting the anesthesiological procedures, the patient was reported in supine position and, after 180 degrees rotation of the surgical bed, was newly placed in contralateral flank position. Using both the previous periumbilical and midline ports, two other 8-mm robotic trocars were placed. The robot was then redocked and RAPN was also performed on the left side using the same previously reported technique. Results Total time: 285 min. Estimated blood losses: 150 cc. Postoperative period: uneventful. Pathological examination: bilateral renal cell carcinoma, negative surgical margins. Conclusions Our experience was encouraging and confirmed the feasibility and safety of this procedure. The planning of our technique was time and cost effective with cosmetic benefit for the patient. However, we think that an appropriate selection of the patients and a skill in robotic renal surgery are advisable before approaching this type of surgery.

Fluid and chemical fluxes along a buried-basement ridge in the eastern Juan de Fuca Ridge flank

NASA Astrophysics Data System (ADS)

Hulme, S.; Wheat, C. G.

2010-12-01

Hydrothermal fluid circulation within oceanic crust at low temperatures affects global biogeochemical cycles, with the volume of fluid circulation rivaling that of the world’s water flux to the oceans from rivers. Our work focuses on the best studied low temperature hydrothermal system on the eastern flank of the Juan de Fuca Ridge where a buried basement ridge 100 km from the active spreading axis has been sampled with a variety of mediums. We use data from deep sea drilling, gravity coring, and submersible operations from five sites along-strike of the buried ridge to better constrain the chemical and fluid fluxes along this transect. A transport (advection-diffusion) model is applied to the data, constraining the volumetric fluid flux per unit length within the oceanic crust from 0.05 and 0.2 m3 y-1 cm-1 and identifying conservative elements within this system. Using an average fluid flux, reactive fluxes are determined for non-conservative elements within basaltic crust for twenty-four chemical species. Conservative species include K, Cl, SO4, Ba, Sr, Cs, Mo, and Y. Only Ca and the rare earth elements Ce and Gd are produced by basaltic basement. The remaining chemical species Mg, Na, ammonium, Li, Rb, Mn, Fe, Co, Zn, Cd, U, La and Yb are all consumed within upper basaltic basement. Fluxes of potentially-bioavailable redox species ammonium, Fe, and Mn into the upper basaltic basement are 3 to 20 nmol y-1cm-2. Possible mechanisms of removal are suggested, placing constraints on microbial metabolic activity and biomineralization.

P-Element Insertion Alleles of Essential Genes on the Third Chromosome of Drosophila Melanogaster: Correlation of Physical and Cytogenetic Maps in Chromosomal Region 86e-87f

PubMed Central

Deak, P.; Omar, M. M.; Saunders, RDC.; Pal, M.; Komonyi, O.; Szidonya, J.; Maroy, P.; Zhang, Y.; Ashburner, M.; Benos, P.; Savakis, C.; Siden-Kiamos, I.; Louis, C.; Bolshakov, V. N.; Kafatos, F. C.; Madueno, E.; Modolell, J.; Glover, D. M.

1997-01-01

We have established a collection of 2460 lethal or semi-lethal mutant lines using a procedure thought to insert single P elements into vital genes on the third chromosome of Drosophila melanogaster. More than 1200 randomly selected lines were examined by in situ hybridization and 90% found to contain single insertions at sites that mark 89% of all lettered subdivisions of the Bridges' map. A set of chromosomal deficiencies that collectively uncover ~25% of the euchromatin of chromosome 3 reveal lethal mutations in 468 lines corresponding to 145 complementation groups. We undertook a detailed analysis of the cytogenetic interval 86E-87F and identified 87 P-element-induced mutations falling into 38 complementation groups, 16 of which correspond to previously known genes. Twenty-one of these 38 complementation groups have at least one allele that has a P-element insertion at a position consistent with the cytogenetics of the locus. We have rescued P elements and flanking chromosomal sequences from the 86E-87F region in 35 lines with either lethal or genetically silent P insertions, and used these as probes to identify cosmids and P1 clones from the Drosophila genome projects. This has tied together the physical and genetic maps and has linked 44 previously identified cosmid contigs into seven ``supercontigs'' that span the interval. STS data for sequences flanking one side of the P-element insertions in 49 lines has identified insertions in the αγ element at 87C, two known transposable elements, and the open reading frames of seven putative single copy genes. These correspond to five known genes in this interval, and two genes identified by the homology of their predicted products to known proteins from other organisms. PMID:9409831

Shallow magma system of Kilauea volcano investigated using L-band synthetic aperture radar data

NASA Astrophysics Data System (ADS)

Fukushima, Y.; Sinnett, D. K.; Segall, P.

2009-12-01

L-band synthetic aperture radar (SAR) images on Kilauea volcano have been archived by Japanese JERS-1 (1992-1998) and ALOS (2006-) satellites. L-band interferometric SAR (InSAR) can measure displacements in a broader region compared to C-band, thanks to higher phase coherence on vegetated areas. We made InSAR analyses on Kilauea using the following L-band data sets: J1) two JERS-1 images, acquired on 20 Oct. 1992 and 1 Mar. 1993 from a descending orbit (RSP path 589) with off-nadir angle of 34.3 degrees, J2) three JERS-1 images, acquired between 8 Oct. 1993 and 3 Jul. 1997 from a descending orbit (RSP path 590) with off-nadir angle of 34.3 degrees, A1) 13 ALOS images, acquired between 24 Jun. 2006 and 14 Feb. 2009 from an ascending orbit with off-nadir angle 9.9 degrees, and A2) 11 ALOS images, acquired between 21 May 2006 and 26 Feb. 2009 from a descending orbit with off-nadir angle 9.9 degrees. One-second SRTM digital elevation data were used to remove the topographic phase. The interferogram of the data set J1 contains signals of 1) a maximum of about 30 cm of range decrease resulting from a dike intrusion in the Makaopuhi crater area, 2) about 10 cm of maximum range increase in the Pu`u `O`o crater area, and 3) a few cm of range increase along the East Rift Zone (ERZ) between the summit and Pu`u `O`o craters. An interferogram (8 Oct. 1993 - 3 Jul. 1997) of the data set J2 indicates 1) range increase (maximum 7 cm/yr) in both the summit and Pu`u `O`o areas, 2) range increase (maximum 5 cm/yr) along the ERZ between the summit and Makaopuhi crater, and 3) range decrease (maximum 6cm/yr) on the southern flank near the coast that is consistent with a seaward movement of the southern flank. A small baseline subset InSAR time-series analysis was performed using all the images of the data sets A1 and A2, assuming that the data acquisitions had been made in pure vertical direction. The analysis period includes the 2007 Father's day dike intrusion. A preliminary result indicates the followings. Pre-eruption period (9 months): 12 cm/yr of uplift in an area of a few km SW of the summit caldera and 3 cm/yr of subsidence along the ERZ between the summit and Napau craters. Co-eruption period (7 months): 15 cm of subsidence in the summit crater and a few tens of cm of uplift associated with the diking. Post-eruption period (17 months): more than 2 cm/yr of subsidence in the summit area and at least 1 cm/yr of subsidence in the Pu`u `O`o area, where the spatial extensions of the two subsiding areas are comparable. While the obtained subsidence signals can be attributed to lava compactions and to artifacts due to errors in the digital elevation model, our results may indicate a developed shallow magma reservoir under the Pu`u `O`o crater, and also smaller shallow reservoirs distributed along the ERZ between the summit and Pu`u `O`o.

The Unusual Wolf-Rayet Star EZ CMa

NASA Technical Reports Server (NTRS)

Skinner, Stephen L.

2002-01-01

The XMM-Newton observations were obtained on 29 - 30 October 2001 during the AO-1 Guest Observer program. Our X-ray analysis focused on data from the European Photon Imaging Camera (EPIC). The VLA observations were obtained during a 3.5 hour interval on 1999 Oct. 19 with the array in hybrid BnA configuration. Radio continuum data were acquired at five different frequencies 1.42 GHz (21 cm), 4.86 GHz (6 cm), 8.44 GHz (3.6 cm), 14.94 GHz (2 cm), and 22.46 GHz (1.3 cm). These radio data are unique since they provide an excellent snapshot picture of the dependence of the radio flux on frequency obtained over a short time interval and are thus immune to the variability effects which can distort results obtained from non-contemporaneous observations at different frequencies.

A computational theory for the classification of natural biosonar targets based on a spike code.

PubMed

Müller, Rolf

2003-08-01

A computational theory for the classification of natural biosonar targets is developed based on the properties of an example stimulus ensemble. An extensive set of echoes (84 800) from four different foliages was transcribed into a spike code using a parsimonious model (linear filtering, half-wave rectification, thresholding). The spike code is assumed to consist of time differences (interspike intervals) between threshold crossings. Among the elementary interspike intervals flanked by exceedances of adjacent thresholds, a few intervals triggered by disjoint half-cycles of the carrier oscillation stand out in terms of resolvability, visibility across resolution scales and a simple stochastic structure (uncorrelatedness). They are therefore argued to be a stochastic analogue to edges in vision. A three-dimensional feature vector representing these interspike intervals sustained a reliable target classification performance (0.06% classification error) in a sequential probability ratio test, which models sequential processing of echo trains by biological sonar systems. The dimensions of the representation are the first moments of duration and amplitude location of these interspike intervals as well as their number. All three quantities are readily reconciled with known principles of neural signal representation, since they correspond to the centre of gravity of excitation on a neural map and the total amount of excitation.

Concerning the Motion and Orientation of Flux Transfer Events Produced by Component and Antiparallel Reconnection

NASA Technical Reports Server (NTRS)

Sibeck, D. G.; Lin, R.-Q.

2011-01-01

We employ the Cooling et al. (2001) model to predict the location, orientation, motion, and signatures of flux transfer events (FTEs) generated at the solstices and equinoxes along extended subsolar component and high ]latitude antiparallel reconnection curves for typical solar wind plasma conditions and various interplanetary magnetic field (IMF) strengths and directions. In general, events generated by the two mechanisms maintain the strikingly different orientations they begin with as they move toward the terminator in opposite pairs of magnetopause quadrants. The curves along which events generated by component reconnection form bow toward the winter cusp. Events generated by antiparallel reconnection form on the equatorial magnetopause during intervals of strongly southward IMF orientation during the equinoxes, form in the winter hemisphere and only reach the dayside equatorial magnetopause during the solstices when the IMF strength is very large and the IMF points strongly southward, never reach the equatorial dayside magnetopause when the IMF has a substantial dawnward or duskward component, and never reach the equatorial flank magnetopause during intervals of northward and dawnward or duskward IMF orientation. Magnetosheath magnetic fields typically have strong components transverse to events generated by component reconnection but only weak components transverse to the axes of events generated by antiparallel reconnection. As a result, much stronger bipolar magnetic field signatures normal to the nominal magnetopause should accompany events generated by component reconnection. The results presented in this paper suggest that events generated by component reconnection predominate on the dayside equatorial and flank magnetopause for most solar wind conditions.

Abdominal Subcutaneous Fat Thickness Measured by Ultrasonography Correlates with Hyperlipidemia and Steatohepatitis in Obese Children.

PubMed

Lee, Sung Hyun; Kim, Dongwan; Baek, Min Young; Tchah, Hann; Kim, Yeon Sun; Ryoo, Eell; Kim, Yun Mi

2015-06-01

The aim of this study is to evaluate the relationship between abdominal subcutaneous fat thickness measured by ultrasonography (US) and serum lipid profile and liver transaminases in obese children. One hundred and sixty-six children diagnosed with obesity from May 2001 to December 2013 were included in this study. Data on serum lipid profile and liver transaminases were collected from clinical records. Abdominal subcutaneous fat thickness and grade of hepatic steatosis were evaluated by US. Of the 166 children, 107 were diagnosed with hepatic steatosis by US, 46 with grade I, 56 with grade II, and five children with grade III. According to the grade of hepatic steasosis, the average values of midline abdominal subcutaneous fat thickness and right flank abdominal subcutaneous fat thickness measured 2.9±0.8 cm and 1.9±0.7 cm in the normal group, 3.3±0.8 cm and 2.0±0.7 cm in grade I, 3.8±0.8 cm and 2.3±0.8 cm in grade II, and 4.1±0.8 cm and 2.8±1.4 cm in grade III, respectively. Abdominal subcutaneous fat thickness correlated with grade of hepatic steatosis (p<0.01). In addition, abdominal subcutaneous fat thickness correlated with concentration of serum lipids and liver transaminases in the age group of 12-14 years (p<0.01). Abdominal subcutaneous fat thickness measured by US can be used as a reliable predictor of possible hyperlipidemia and steatohepatitis in children, especially during the adolescent stage.

Deformation history of Mauna Loa (Hawaii) from 2003 to 2014 through InSAR data: understanding the shorter-term processes

NASA Astrophysics Data System (ADS)

La Marra, Daniele; Poland, Michael P.; Acocella, Valerio; Battaglia, Maurizio; Miklius, Asta

2016-04-01

Geodesy allows detecting the deformation of volcanoes, thus understanding magmatic processes. This becomes particularly efficient when time series are available and volcanoes can be monitored on the mean-term (decades), and not only during a specific event. Here we exploit the SBAS technique, using SAR images from ENVISAT (descending and ascending orbits; 2003 - 2010) and COSMO-SkyMed (descending and ascending orbits; 2012 - 2014), to study a decade of deformation at Mauna Loa (Hawaii). These data are merged time series data from 24 continuously operating GPS stations, which allows us to calibrate the InSAR time series. Our results show a long-term inflation of the volcano from 2003 to 2014, reaching a peak of ~11 cm/yr on the summit area between mid-2004 to mid-2005 and then slowing down. Within this frame, we were able to identify five main periods with approximately linear deformation behavior. The inversion of the deformation data in the first four periods suggests the repeated, though not constant, intrusion of one or more dikes below the summit caldera and the upper Southwest Rift Zone. Moreover, the dike intrusion coincides with minor acceleration of flank slip. Such a behavior is distinctive and, with the exception of the nearby Kilauea, has not been observed at any other volcano on the mean term. It is proposed that continuous, even though not constant flank instability of the SE flank may promote semi-continuous intrusions in a volcano with a ready magma supply.

Incidence and clinical characteristics of symptomatic choroidal metastasis from lung cancer.

PubMed

Kreusel, Klaus-Martin; Bechrakis, Nikolaos E; Wiegel, Thomas; Krause, Lothar; Foerster, Michael H

2008-08-01

To determine the clinical characteristics of symptomatic choroidal metastasis (CM) resulting from metastatic lung cancer. Twenty-two consecutive patients with symptomatic CM resulting from lung cancer were retrospectively reviewed for ocular findings, medical history and systemic disease. All patients underwent a complete screening for further organ metastasis by computed tomography (CT) and bone scintigraphy. Annual frequency of CM was determined and compared with the incidence predicted from ocular screening studies. In eight of 22 (36%; 95% confidence interval [CI] 17-59) patients, lung cancer had been diagnosed before occurrence of CM, with a median interval of 13 months. In 14 patients lung cancer was detected after diagnosis of CM, with a median interval of 1 month. Choroidal metastasis was unilateral, solitary and located close to or at the posterior pole in the majority of patients. Further organ metastasis with a median number of three affected organ systems was present in 19 (86%; 95% CI 65-97) patients. Median survival after diagnosis of symptomatic CM was 13 months, by contrast with 2 months in lung cancer patients with CM identified in an ocular screening study. The mean number of patients in Berlin diagnosed with symptomatic CM was 1.4 per year, which was two orders of magnitude less than predicted from screening studies. Symptomatic choroidal lung cancer metastasis in the majority of patients presents as a solitary tumour before diagnosis of lung cancer in patients with multiple organ systems affected by metastatic disease. Contrary to predictions from ocular screening studies, it is a rare clinical entity.

Fibroepithelial ureteral polyps presenting as ureteropelvic obstruction

PubMed Central

Cusano, Antonio; Abarzua-Cabezas, Fernando; Kesler, Stuart

2014-01-01

A 57-year-old woman presented with bilateral abdominal pain and flank discomfort. Imaging studies, consisting of CT scan, diethylene triamine pentaacetic acid renal scan with Lasix and a retrograde pyelogram, indicated an obstruction at the uteropelvic junction (UPJ), possibly due to fibroepithelial polyps within the ureter. A robotic pyeloplasty revealed a ureteral diverticulum and a thin, still-attached fibroepithelial polyp of approximately 2 cm in length. The patient tolerated the procedure well and was discharged one day postpyeloplasty with no reported complications. This rare clinical scenario should be considered when formulating a diagnosis for a UPJ obstruction. PMID:24759168

Linkage analyses in Darier disease (DD) and Halley-Halley disease (HHD): Fine mapping of the DD locus on chromosome 12q and rejection of the hypothesis that HHD is allelic to DD

DOE Office of Scientific and Technical Information (OSTI.GOV)

Richard, G.; Wright, A.R.; Compton, J.G.

1994-09-01

DD and HHD are rare autosomal dominant genodermatoses. These disorders of cornification share some clinical and histologic features and for many years were thought to be variants of the same disease. DD presents as hyperkeratotic papules and plaques, usually in a seborrheic distribution; rarely, blisters can occur. Mucous membranes and nails may also be involved. Skin involvement in HHD includes erythematous and scaly plaques, and vesicular or crusted lesions, often in intertriginous areas. Both diseases have age-dependent penetrance and are characterized histologically by a focal loss of cell adhesion in the suprabasal epidermis leading to lacunaes (acantholysis) and premature keratinizationmore » (dyskeratosis). We analyzed linkage of DD in ten families with markers in 12q23-q24.1, the region to which it has been mapped. Detailed genotype analysis of recombinant chromosomes in our families, along with previously reported data, refine the location of the DD gene to about a 4 cM interval flanked by the loci D12S129 and D12S105. We have excluded two genes in 12q22-q24, PLA2A and PAH, as candidate loci for DD. Three other gene loci (PPP1C, PMCH and PMCA1) mapping in 12q21-q24, remain potential candidates. The region containing the DD gene is an obvious candidate location to test for HHD. We investigated four multigeneration families with HHD for linkage to the DD gene locus using several tightly linked microsatellite markers. Obligate recombination with each marker tested was observed, and the HHD locus was excluded from about 37 cM around the DD locus, proving that DD and HHD are not allelic disorders.« less

A Comparison of Slow Slip Events at Etna and Kilauea Volcanoes

NASA Astrophysics Data System (ADS)

Mattia, M.; Montgomery-Brown, E. K.; Bruno, V.; Scandura, D.

2016-12-01

Mt. Etna and Kilauea Volcano are both large basaltic volcanoes with unstable flanks, on which slow slip events have been observed by continuous GPS networks. The slow slip events (SSEs) last about two days at both volcanoes, although there are some differences in the depths and frequencies. While recurrence intervals were initially somewhat irregular at Kilauea, the most recent 5 events have become more regular with an inter-event time of about 2.4 years. At Mt. Etna, these events seem to be more frequent (about 2 per year) and are often related to the main recharge phases of the volcano. Ground deformation data have been used on both volcanoes for determining the source of the anomalous displacements and, from this point of view, the two volcanoes seem very different. Although slow slip events at Mt. Etna and Kilauea are much shallower than many subduction zone slow slip events, slip at Kilauea occurs on a discrete decollement at about 8 km deep. At Mt. Etna, a variety of data suggest that the sliding could be much shallower and more diffuse. In this work, we show some preliminary results of a "block-like" model of Mt. Etna's slow slip events that is able to explain the source of the flank displacements with slip on the Giarre Wedge near the coast. This work will allow a possible classification of different types of slip events affecting the flanks of large basaltic volcanoes, often densely populated, with a significant impact on the evaluation of seismic and volcanic hazard.

Ion-Scale Wave Properties and Enhanced Ion Heating Across the Low-Latitude Boundary Layer During Kelvin-Helmholtz Instability

NASA Astrophysics Data System (ADS)

Moore, T. W.; Nykyri, K.; Dimmock, A. P.

2017-11-01

In the Earth's magnetosphere, the magnetotail plasma sheet ions are much hotter than in the shocked solar wind. On the dawn sector, the cold-component ions are more abundant and hotter by 30-40% when compared to the dusk sector. Recent statistical studies of the flank magnetopause and magnetosheath have shown that the level of temperature asymmetry of the magnetosheath is unable to account for this, so additional physical mechanisms must be at play, either at the magnetopause or plasma sheet that contributes to this asymmetry. In this study, we perform a statistical analysis on the ion-scale wave properties in the three main plasma regimes common to flank magnetopause boundary crossings when the boundary is unstable to Kelvin-Helmholtz instability (KHI): hot and tenuous magnetospheric, cold and dense magnetosheath, and mixed (Hasegawa et al., 2004). These statistics of ion-scale wave properties are compared to observations of fast magnetosonic wave modes that have recently been linked to Kelvin-Helmholtz (KH) vortex centered ion heating (Moore et al., 2016). The statistical analysis shows that during KH events there is enhanced nonadiabatic heating calculated during ion scale wave intervals when compared to non-KH events. This suggests that during KH events there is more free energy for ion-scale wave generation, which in turn can heat ions more effectively when compared to cases when KH waves are absent. This may contribute to the dawn favored temperature asymmetry of the plasma sheet; recent studies suggest KH waves favor the dawn flank during Parker-Spiral interplanetary magnetic field.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tahvanainen, E.; Karila, E.; Kolehmainen, J.

We recently assigned a gene for autosomal recessive cornea plana congenita (CNA2; MIM No. 217300) by linkage analysis to the approximately 3-cM interval between markers D12S82 and D12S327. Here, we extended these studies by exploiting the haplotype and linkage disequilibrium information that can be derived from the genetically isolated Finnish population and its subpopulations. By testing 32 independent families with 10 polymorphic markers in the CNA2 interval, strong allelic association between CNA2 and a set of markers with a peak at marker D12S351 was detected. Based on linkage disequilibrium analysis, the critical region for CNA2 could be narrowed to onlymore » 0.04-0.3 cM from marker D12S351, thus defining a critical interval 0.08-0.60 cM in length. These results provide a basis for highly focused positional cloning of CNA2. 18 refs., 5 figs., 1 tab.« less

Steady-state plasma concentration profile of transdermal rotigotine: an integrated analysis of three, open-label, randomized, phase I multiple dose studies.

PubMed

Elshoff, Jan-Peer; Braun, Marina; Andreas, Jens-Otto; Middle, Michelle; Cawello, Willi

2012-04-01

The dopamine agonist rotigotine is formulated in a transdermal delivery system (patch) for once-daily application. It has been reported as efficacious in the treatment of idiopathic Parkinson's disease (PD) and restless legs syndrome. This article summarizes the results of 3 clinical studies conducted to characterize the 24-hour pharmacokinetic profile of rotigotine in steady state and the effect of different patch application sites on this profile. In addition, the relative bioavailability of a single, large patch versus 2 smaller patches was assessed. One Phase I study (SP871) assessed the steady-state pharmacokinetic properties at different application sites at a rotigotine maintenance dose of 3 mg/24 hours in healthy participants. Due to tolerability issues, the steady-state pharmacokinetic properties of rotigotine at higher doses (8 mg/24 hours) was assessed in 2 Phase I studies (SP630, SP651) in early-stage PD patients. Relative rotigotine bioavailability from a 40 cm(2) patch versus 2 × 20 cm(2) patches (SP651) and from a 15 cm(2) patch versus 1 × 5 cm(2) + 1 × 10 cm(2) patches (SP871) was also evaluated. Rotigotine concentrations in plasma were analyzed using a validated LC-MS/MS method. The pharmacokinetic variables were calculated using standard noncompartmental analysis. Release of rotigotine to the skin was 31% to 62% of total drug content in the patch. Variability of rotigotine exposure was low within participants (15%) compared with the variability observed between participants (54%). Rotigotine exposure increased proportionally in the therapeutic dose range of 2 mg/24 hours to 8 mg/24 hours. Plasma concentrations at steady state were stable over the 24-hour patch-on period. Delivery via a single, large patch compared with a combination of smaller patches did not appear to influence exposure to rotigotine. Bioavailability showed some variability depending on patch application site (hip, shoulder, abdomen, flank, thigh, upper arm); the respective mean ratios for AUC ranged between 0.87 (abdomen vs flank) and 1.46 (shoulder vs thigh). Continuous rotigotine delivery via a once-daily transdermal patch generated stable mean steady-state 24-hour plasma concentrations in healthy participants as well as patients with early-stage PD. Doses were achieved either by application of 1 large patch or a combination of smaller patches, resulting in the same total surface area. Copyright © 2012 Elsevier HS Journals, Inc. All rights reserved.

Periodic magnetopause oscillations observed with the GOES satellites on March 24, 1991

NASA Technical Reports Server (NTRS)

Cahill, L. J., Jr.; Winckler, J. R.

1992-01-01

The GOES 6 and 7 satellites were in the dayside magnetosphere late on March 24, 1991, when the magnetopause moved in to geosynchronous orbit. Observations on GOES 6 near 1030 local time (LT) indicated six inward and outward periodic movements of the magnetopause past the satellite over a 30-min interval. Later the magnetopause moved farther in, placing GOES 6 (1100 LT) in the magnetosheath and then moving in past GOES 7, near 1245 LT. The periodic oscillations of the magnetopause at GOES 6 suggest surface waves propagating toward the dawn flank of the magnetopause.

Establishment of a tamoxifen-inducible Cre-driver mouse strain for widespread and temporal genetic modification in adult mice.

PubMed

Ichise, Hirotake; Hori, Akiko; Shiozawa, Seiji; Kondo, Saki; Kanegae, Yumi; Saito, Izumu; Ichise, Taeko; Yoshida, Nobuaki

2016-07-29

Temporal genetic modification of mice using the ligand-inducible Cre/loxP system is an important technique that allows the bypass of embryonic lethal phenotypes and access to adult phenotypes. In this study, we generated a tamoxifen-inducible Cre-driver mouse strain for the purpose of widespread and temporal Cre recombination. The new line, named CM32, expresses the GFPneo-fusion gene in a wide variety of tissues before FLP recombination and tamoxifen-inducible Cre after FLP recombination. Using FLP-recombined CM32 mice (CM32Δ mice) and Cre reporter mouse lines, we evaluated the efficiency of Cre recombination with and without tamoxifen administration to adult mice, and found tamoxifen-dependent induction of Cre recombination in a variety of adult tissues. In addition, we demonstrated that conditional activation of an oncogene could be achieved in adults using CM32Δ mice. CM32Δ;T26 mice, which harbored a Cre recombination-driven, SV40 large T antigen-expressing transgene, were viable and fertile. No overt phenotype was found in the mice up to 3 months after birth. Although they displayed pineoblastomas (pinealoblastomas) and/or thymic enlargement due to background Cre recombination by 6 months after birth, they developed epidermal hyperplasia when administered tamoxifen. Collectively, our results suggest that the CM32Δ transgenic mouse line can be applied to the assessment of adult phenotypes in mice with loxP-flanked transgenes.

Genetic fine-mapping of DIPLOSPOROUS in Taraxacum (dandelion; Asteraceae) indicates a duplicated DIP-gene

PubMed Central

2010-01-01

Background DIPLOSPOROUS (DIP) is the locus for diplospory in Taraxacum, associated to unreduced female gamete formation in apomicts. Apomicts reproduce clonally through seeds, including apomeiosis, parthenogenesis, and autonomous or pseudogamous endosperm formation. In Taraxacum, diplospory results in first division restitution (FDR) nuclei, and inherits as a dominant, monogenic trait, independent from the other apomixis elements. A preliminary genetic linkage map indicated that the DIP-locus lacks suppression of recombination, which is unique among all other map-based cloning efforts of apomeiosis to date. FDR as well as apomixis as a whole are of interest in plant breeding, allowing for polyploidization and fixation of hybrid vigor, respectively. No dominant FDR or apomixis genes have yet been isolated. Here, we zoom-in to the DIP-locus by largely extending our initial mapping population, and by analyzing (local) suppression of recombination and allele sequence divergence (ASD). Results We identified 24 recombinants between two most closely linked molecular markers to DIP in an F1-population of 2227 plants that segregates for diplospory and lacks parthenogenesis. Both markers segregated c. 1:1 in the entire population, indicating a 1:1 segregation rate of diplospory. Fine-mapping showed three amplified fragment length polymorphisms (AFLPs) closest to DIP at 0.2 cM at one flank and a single AFLP at 0.4 cM at the other flank. Our data lacked strong evidence for ASD at marker regions close to DIP. An unexpected bias towards diplosporous plants among the recombinants (20 out of 24) was found. One third of these diplosporous recombinants showed incomplete penetrance of 50-85% diplospory. Conclusions Our data give interesting new insights into the structure of the diplospory locus in Taraxacum. We postulate a locus with a minimum of two DIP-genes and possibly including one or two enhancers or cis-regulatory elements on the basis of the bias towards diplosporous recombinants and incomplete penetrance of diplospory in some of them. We define the DIP-locus to 0.6 cM, which is estimated to cover ~200-300 Kb, with the closest marker at 0.2 cM. Our results confirm the minor role of suppression of recombination and ASD around DIP, making it an excellent candidate to isolate via a chromosome-walking approach. PMID:20659311

Genetic fine-mapping of DIPLOSPOROUS in Taraxacum (dandelion; Asteraceae) indicates a duplicated DIP-gene.

PubMed

Vijverberg, Kitty; Milanovic-Ivanovic, Slavica; Bakx-Schotman, Tanja; van Dijk, Peter J

2010-07-26

DIPLOSPOROUS (DIP) is the locus for diplospory in Taraxacum, associated to unreduced female gamete formation in apomicts. Apomicts reproduce clonally through seeds, including apomeiosis, parthenogenesis, and autonomous or pseudogamous endosperm formation. In Taraxacum, diplospory results in first division restitution (FDR) nuclei, and inherits as a dominant, monogenic trait, independent from the other apomixis elements. A preliminary genetic linkage map indicated that the DIP-locus lacks suppression of recombination, which is unique among all other map-based cloning efforts of apomeiosis to date. FDR as well as apomixis as a whole are of interest in plant breeding, allowing for polyploidization and fixation of hybrid vigor, respectively. No dominant FDR or apomixis genes have yet been isolated. Here, we zoom-in to the DIP-locus by largely extending our initial mapping population, and by analyzing (local) suppression of recombination and allele sequence divergence (ASD). We identified 24 recombinants between two most closely linked molecular markers to DIP in an F1-population of 2227 plants that segregates for diplospory and lacks parthenogenesis. Both markers segregated c. 1:1 in the entire population, indicating a 1:1 segregation rate of diplospory. Fine-mapping showed three amplified fragment length polymorphisms (AFLPs) closest to DIP at 0.2 cM at one flank and a single AFLP at 0.4 cM at the other flank. Our data lacked strong evidence for ASD at marker regions close to DIP. An unexpected bias towards diplosporous plants among the recombinants (20 out of 24) was found. One third of these diplosporous recombinants showed incomplete penetrance of 50-85% diplospory. Our data give interesting new insights into the structure of the diplospory locus in Taraxacum. We postulate a locus with a minimum of two DIP-genes and possibly including one or two enhancers or cis-regulatory elements on the basis of the bias towards diplosporous recombinants and incomplete penetrance of diplospory in some of them. We define the DIP-locus to 0.6 cM, which is estimated to cover approximately 200-300 Kb, with the closest marker at 0.2 cM. Our results confirm the minor role of suppression of recombination and ASD around DIP, making it an excellent candidate to isolate via a chromosome-walking approach.

Positioning the actual interference fringe pattern on the tooth flank in measuring gear tooth flanks by laser interferometry

NASA Astrophysics Data System (ADS)

Fang, Suping; Wang, Leijie; Liu, Shiqiao; Komori, Masaharu; Kubo, Aizoh

2011-05-01

In measuring form deviation of gear tooth flanks by laser interferometry, the collected interference fringe pattern (IFP) is badly distorted, in the case of shape, relative to the actual tooth flank. Meanwhile, a clear and definite mapping relationship between the collected IFP and the actual tooth flank is indispensable for both transforming phase differences into deviation values and positioning the measurement result on the actual tooth flank. In order to solve these problems, this paper proposes a method using the simulation tooth image as a bridge connecting the actual tooth flank and the collected IFP. The mapping relationship between the simulation tooth image and the actual tooth flank has been obtained by ray tracing methods [Fang et al., Appl. Opt. 49(33), 6409-6415 (2010)]. This paper mainly discusses how to build the relationship between the simulation tooth image and the collected IFP by using a matching algorithm of two characteristic point sets. With the combination of the two above-mentioned assistant mapping relationships, the mapping relationship between the collected IFP and the actual tooth flank can be built; the collected IFP can be positioned on the actual tooth flank. Finally, the proposed method is employed in a measurement of the form deviation of a gear tooth flank and the result proves the feasibility of the proposed method.

Significant Admixture Linkage Disequilibrium across 30 cM around the FY Locus in African Americans

PubMed Central

Lautenberger, James A.; Stephens, J. Claiborne; O'Brien, Stephen J.; Smith, Michael W.

2000-01-01

Scientists, to understand the importance of allelic polymorphisms on phenotypes that are quantitative and environmentally interacting, are now turning to population-association screens, especially in instances in which pedigree analysis is difficult. Because association screens require linkage disequilibrium between markers and disease loci, maximizing the degree of linkage disequilibrium increases the chances of discovering functional gene-marker associations. One theoretically valid approach—mapping by admixture linkage disequilibrium (MALD), using recently admixed African Americans—is empirically evaluated here by measurement of marker associations with 15 short tandem repeats (STRs) and an insertion/deletion polymorphism of the AT3 locus in a 70-cM segment at 1q22-23, around the FY (Duffy) locus. The FY polymorphism (−46T→C) disrupts the GATA promoter motif, specifically blocking FY erythroid expression and has a nearly fixed allele-frequency difference between European Americans and native Africans that is likely a consequence of a selective advantage of FY−/− in malaria infections. Analysis of linkage disequilibrium around the FY gene has indicated that there is strong and consistent linkage disequilibrium between FY and three flanking loci (D1S303, SPTA1, and D1S484) spanning 8 cM. We observed significant linkage-disequilibrium signals over a 30-cM region from −4.4 to 16.3 cM (from D1S2777 to D1S196) for STRs and at 26.4 cM (AT3), which provided quantitative estimates of centimorgan limits, by MALD assessment in African American population-association analyses, of 5–10 cM. PMID:10712211

Three-dimensional imaging, change detection, and stability assessment during the centerline trench levee seepage experiment using terrestrial light detection and ranging technology, Twitchell Island, California, 2012

USGS Publications Warehouse

Bawden, Gerald W.; Howle, James; Bond, Sandra; Shriro, Michelle; Buck, Peter

2014-01-01

A full scale field seepage test was conducted on a north-south trending levee segment of a now bypassed old meander belt on Twitchell Island, California, to understand the effects of live and decaying root systems on levee seepage and slope stability. The field test in May 2012 was centered on a north-south trench with two segments: a shorter control segment and a longer seepage test segment. The complete length of the trench area measured 40.4 meters (m) near the levee centerline with mature trees located on the waterside and landside of the levee flanks. The levee was instrumented with piezometers and tensiometers to measure positive and negative porewater pressures across the levee after the trench was flooded with water and held at a constant hydraulic head during the seepage test—the results from this component of the experiment are not discussed in this report. We collected more than one billion three-dimensional light detection and ranging (lidar) data points before, during, and after the centerline seepage test to assess centimeter-scale stability of the two trees and the levee crown. During the seepage test, the waterside tree toppled (rotated 20.7 degrees) into the water. The landside tree rotated away from the levee by 5 centimeters (cm) at a height of 2 m on the tree. The paved surface of the levee crown had three regions that showed subsidence on the waterside of the trench—discussed as the northern, central, and southern features. The northern feature is an elongate region that subsided 2.1 cm over an area with an average width of 1.35 m that extends 15.8 m parallel to the trench from the northern end of the trench to just north of the trench midpoint, and is associated with a crack 1 cm in height that formed during the seepage test on the trench wall. The central subsidence feature is a semicircular region on the waterside of the trench that subsided by as much as 6.2 cm over an area 3.4 m wide and 11.2 m long. The southern feature is an elongate region that has a maximum subsidence of 3.5 cm over an area 0.75 m wide and 8.1 m long and is associated with a number of small fractures in the pavement that are predominately north-south-trending and parallel to the trench. We determined that there was no significant motion of the levee flank during the last week of the seepage test. We also determined biomorphic parameters for the landside tree, such as the 3D positioning on the levee, tree height, levee parallel/perpendicular cross sectional area, and canopy centroid. These biomorphic parameters were requested to support a University of California Berkeley team studying seepage and stability on the levee. A gridded, 2-cm bare-earth digital elevation model of the levee crown and the landside levee flank from the final terrestrial lidar (T-Lidar) survey provided detailed topographic data for future assessment. Because the T-Lidar was not integrated into the project design, other than an initial courtesy dataset to help characterize the levee surface, our ability to contribute to the overall science goals of the seepage test was limited. Therefore, our analysis focused on developing data collection and processing methodology necessary to align ultra high-resolution T-Lidar data (with an average spot spacing 2–3 millimeters on the levee crown) from several instrument setup locations to detect, measure, and characterize dynamic centimeter-scale deformation and surface changes during the seepage test.

Localization of a locus (GLC1B) for adult-onset primary open angle glaucoma to the 2cen-q13 region

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stoilova, D.; Trifan, O.C.; Sarfarazi, M.

1996-08-15

Primary open angle glaucoma (GLC1) is a common ocular disorder with a characteristic degeneration of the optic nerve and visual field defects that is often associated with an elevated intraocular pressure. The severe but rare juvenile-onset type has previously been mapped to 1q21-q31, and its genetic heterogeneity has been established. Herein, we present a new locus (GLC1B) for one form of GLC1 on chromosome 2cen-q13 with a clinical presentation of low to moderate intraocular pressure, onset in late 40s, and a good response to medical treatment. Two-point and haplotype analyses of affected and unaffected meioses in six families provided maximummore » linkage information with D2S417, GATA112EO3, D2S113, D2S373, and D2S274 (lod scores ranging from 3.11 to 6.48) within a region of 8.5 cM that is flanked by D2S2161 and D2S2264. Analysis of affected meioses alone revealed no recombination with an additional two markers (D2S2264 and D2S135) in a region of 11.2 cM that is flanked by D2S2161 and D2S176. Analysis of unaffected meioses identified only one healthy 86-year-old male who has inherited the entire affected haplotype and, hence, is a gene carrier for this condition. Eight additional families with similar and/or different clinical presentation did not show any linkage to this region and, therefore, provided evidence for genetic heterogeneity of adult-onset primary open angle glaucoma. 63 refs., 2 figs., 2 tabs.« less

Removal of ureteral calculi in two geldings via a standing flank approach.

PubMed

Frederick, Jeremy; Freeman, David E; MacKay, Robert J; Matyjaszek, Sarah; Lewis, Jordan; Sanchez, L Chris; Meyer, Stephanie

2012-11-01

Two geldings, aged 11 and 17 years, were examined for treatment of ureteroliths located approximately 10 cm proximal to the bladder. Ureteral obstruction was an incidental finding in 1 horse that was referred because of urinary tract obstruction and a cystic calculus. This horse did not have clinical or laboratory evidence of renal failure, although severe hydronephrosis was evident on transabdominal ultrasonography. The second patient had a serum creatinine concentration of 6.3 mg/dL (reference range, 0.8 to 2.2 mg/dL) and mild hydronephrosis of the affected left kidney. In both patients, the obstructed ureter was exteriorized through a flank incision as a standing procedure, and the calculus was crushed and removed with a uterine biopsy forceps introduced through a ureterotomy approximately 25 cm proximal to the calculus. The cystic calculus was removed through a perineal urethrostomy by lithotripsy, piecemeal extraction, and lavage. The horse without azotemia developed pyelonephritis in the affected kidney and was euthanatized because of complications of a nephrectomy 13 months later. In the horse with azotemia, the serum creatinine concentration decreased after surgery, and the horse returned to its intended use. However, it was euthanatized approximately 2 years after surgery because of progressive renal failure, and a large nephrolith was found in the previously unobstructed right kidney. The technique used for ureterolith removal was successful in both horses in this report, did not require sophisticated equipment, and could be effective in the early stages of ureteral obstruction as a means of restoring urine flow and renal function. The outcome in the horse with advanced unilateral renal disease without azotemia would suggest that nephrectomy should be considered as a treatment in such patients.

Effect of High Intensity Interval Training on Cardiac Function in Children with Obesity: A Randomised Controlled Trial.

PubMed

Ingul, Charlotte B; Dias, Katrin A; Tjonna, Arnt E; Follestad, Turid; Hosseini, Mansoureh S; Timilsina, Anita S; Hollekim-Strand, Siri M; Ro, Torstein B; Davies, Peter S W; Cain, Peter A; Leong, Gary M; Coombes, Jeff S

2018-02-13

High intensity interval training (HIIT) confers superior cardiovascular health benefits to moderate intensity continuous training (MICT) in adults and may be efficacious for improving diminished cardiac function in obese children. The aim of this study was to compare the effects of HIIT, MICT and nutrition advice interventions on resting left ventricular (LV) peak systolic tissue velocity (S') in obese children. Ninety-nine obese children were randomised into one of three 12-week interventions, 1) HIIT [n = 33, 4 × 4 min bouts at 85-95% maximum heart rate (HR max ), 3 times/week] and nutrition advice, 2) MICT [n = 32, 44 min at 60-70% HR max , 3 times/week] and nutrition advice, and 3) nutrition advice only (nutrition) [n = 34]. Twelve weeks of HIIT and MICT were equally efficacious, but superior to nutrition, for normalising resting LV S' in children with obesity (estimated mean difference 1.0 cm/s, 95% confidence interval 0.5 to 1.6 cm/s, P < 0.001; estimated mean difference 0.7 cm/s, 95% confidence interval 0.2 to 1.3 cm/s, P = 0.010, respectively). Twelve weeks of HIIT and MICT were superior to nutrition advice only for improving resting LV systolic function in obese children. Copyright © 2017 Elsevier Inc. All rights reserved.

Irrigation scheduling using soil moisture sensors

USDA-ARS?s Scientific Manuscript database

Soil moisture sensors were evaluated and used for irrigation scheduling in humid region. Soil moisture sensors were installed in soil at depths of 15cm, 30cm, and 61cm belowground. Soil volumetric water content was automatically measured by the sensors in a time interval of an hour during the crop g...

Deciphering Past and Present Tectonics of the Rio Grande Rift in New Mexico Utilizing Apatite Fission Track Thermochronology, Geochronology, Quaternary Faulting, and Cross-Section Restoration

NASA Astrophysics Data System (ADS)

Ricketts, J. W.; Karlstrom, K. E.; Kelley, S. A.; Priewisch, A.; Crossey, L. J.; Asmerom, Y.; Polyak, V.; Selmi, M.

2011-12-01

The Rio Grande rift provides an excellent laboratory for understanding styles and processes of extensional tectonics, and their driving forces. We apply apatite fission track (AFT) thermochronology, geochronology, fracture analysis, and cross-section restoration to decipher past and present tectonics of the Rio Grande rift. AFT data has been compiled from rift flank uplifts along the Rio Grande rift in an attempt to recognize long wavelength spatial and temporal patterns. AFT ages record time of cooling of rocks below ~110°C and, when cooling is due to exhumation, age elevation traverses can record upward advection of rocks through paleo 110°C isotherms. The relatively passive sides of half-grabens (e.g. Manzanos and Santa Fe Range) preserve Laramide AFT ages ranging from 45-70 Ma, indicating they were cooled during the Laramide Orogeny and have remained cooler than 110°C since then. Rift flanks on the tectonically active sides of half-grabens, (e.g. Sierra Ladrones, Sandias, Taos Range, and Sierra Blanca) have AFT ages that range from 35 Ma to <10 Ma, and record cooling that initiated with the Oligocene ignimbrite flare-up and continues through the Neogene. Our analysis tracks the approximate elevation of paleo 110°C isotherms in 10 Ma intervals from the Laramide to the present and shows that reconstructed paleoisotherms have been differentially uplifted, warped, and faulted since their time of formation, and hence serve as markers of uplift history and its mechanisms. AFT data at Ladron Peak, an active rift flank along the western margin of the Rio Grande rift in central New Mexico, indicates that it was rapidly unroofed between 20-10 Ma. Preliminary apatite helium data gives a similar age vs. elevation trend, but apatites have highly radiogenically damaged lattices and hence have corrected closure temperatures tens of degrees higher than AFT ages. The style of faulting at Ladron Peak is unusual because it is bounded by the anomalously low-angle (~15°) Jeter fault. In order to understand the evolution of faulting in this region, a balanced cross-section was constructed and restored to its pre-rift geometry. Our working hypothesis is that the low angle of the Jeter fault is most adequately explained by a rolling hinge model, where isostatic uplift causes progressive rotation of an initially steep (~60°) normal fault to shallower dips. Thirty km north of Ladron along the west side of the rift, Quaternary extensional faulting is evident in large travertine deposits at the Belen Quarry. Extensional fractures and cm-scale displacement normal faults at 4 locations give average paleostress orientations of 087, 112, 116, 127. A U-series age of 312 ka on faulted upper layers in one quarry indicates post-312 ka slip that we interpret to reflect surface manifestations of microseismicity above the Socorro magma body.

Late Holocene stratigraphy of the Tetimpa archaeological sites, northeast flank of Popocatepetl volcano, central Mexico

USGS Publications Warehouse

Panfil, M.S.; Gardner, T.W.; Hirth, K.G.

1999-01-01

Late Holocene (240 km2 on the east side of the volcano with >25 cm of tephra. Lavas from eruptive sequence I dammed drainage in the lowland area near the town of San Nicolas and caused local upstream deposition of as much as 30 m of lacustrine silts, clays, and sands. These lacustrine deposits record an eruptive hiatus for the Tetimpa area of about 750 14C yr: between ca. 2100 and ca. 1350 yr B.P., no major tephras were deposited in the Tetimpa area. In upland areas, this time period is represented by an unconformity and by Entisols formed in the top of pumice deposits and lavas from eruptive sequence I. Artifacts, agricultural furrows, and dwellings record human reoccupation of this surface. At the end of this hiatus, several lahars were deposited above the lacustrine sequence and locally above the Entisol in upland positions adjacent to streams. Between ca. 1350 and ca. 1200 yr B.P., tephras from eruptive sequence II buried these paleosols, occupation sites, lacustrine sediments, and lahars. Andesitic (~62% SiO2) pumice lapilli deposits in the Tetimpa area record three pumice-fall eruptions directed northeast and east of the crater. The first and smallest of these (maximum Tetimpa area thickness = 12 cm; >52 km2 covered by >25 cm) took place at ca. 1350 yr B.P. and was accompanied by pyroclastic surge events preserved in the Tetimpa area by charcoal, sand waves, and cross-stratified sand-sized tephra. At ca. 1200 yr B.P., the products of two Plinian-style events and additional pyroclastic surges reached the Tetimpa area. The largest of these tephra-fall events covered the Tetimpa area with 0.5-1 m of tephra and blanketed an area of >230 km2 with a thickness of >25 cm. The Tetimpa record confirms two of the four periods of explosive volcanism recognized by studies conducted around Popocatepetl in the past 30 yr. Eruptive sequence I corresponds to the explosive period between 2100 and 2500 yr B.P., and eruptive sequence II corresponds to the period between 900 and 1400 yr B.P. The archaeology and lacustrine stratigraphy of the Tetimpa area help constrain the timing of the Plinian phase of eruptive sequence I to ca. 2100 yr B.P. and suggest that the pumice-fall eruptions of eruptive sequence II took place in at least two intervals between ca. 1350 and ca. 1200 yr B.P.

Sedimentological and geochemical characteristic of varved lake sediment of the Lake Jelonek (North Poland)

NASA Astrophysics Data System (ADS)

Kramkowski, M. A.; Filbrandt-Czaja, A.; Ott, F.; Slowinski, M. M.; Tjallingii, R.; Błaszkiewicz, M.; Brauer, A.

2016-12-01

Lake Jelonek is located in Northern Poland. The lake covers an area of 19,9 ha and has a maximum depth of 13,8 m. Three overlapping series of 14,3 m - long sediment records have been cored with an UWITEC 90 mm diameter piston corer from the deepest part of the lake. The cores were split in half, lithologically described, photographed and correlated with each other by 28 marker layers to construct a composite profile covering 1426cm. Here we present detailed varve micro-facies for different sediment intervals and the preliminary chronology based on AMS 14C dating of 10 terrestrial macro remains samples and the Askja AD-1875 tephra. Here we present initial results from thin section analyses for two intervals. First (I) the uppermost 0-256 cm and second (II) the interval from 768-1296 cm. Intercalated between these two varved interval is a thick section (512 cm) of homogeneous organic-ditomaceous sediments. We present varve micro-facies data in combination with µ-XRF element scanning for comprehensive reconstruction of the sedimentation processes in Lake Jelonek. Varve counting reveals that the lower floating varve interval covers the time period from 1850 - 10500 cal a BP, while the uppermost 256 cm varved sediments comprise ca 925 years (2008-1083 AD). The main goal is to synchronize the sediment record from Lake Jelonek with European and Worldly records, to achieve a comprehensive knowledge of landscape forming processes and to distinguish between local, regional and global impacts during the past. This study is a contribution to the Virtual Institute of Integrated Climate and Landscape Evolution Analysis -ICLEA- of the Helmholtz Association; grant number VH-VI-415, National Science Centre, Poland grant 2015/19/N/ST10/02655 and from the Science and Research Funds for 2015-2016 allocated to a co-financed international project, CONTRACT No. 3500/ICLEA/15/2016/0.

Proper Antibiotic Use in a Home-Based Primary Care Population Treated for Urinary Tract Infections.

PubMed

Gee, Megan E; Ford, James; Conway, Erin L; Ott, Michael C; Sellick, John A; Mergenhagen, Kari A

2018-02-01

To evaluate the trends associated with diagnosis and treatment of urinary tract infections (UTI) in a home-based primary care population of Veterans Health System patients from 2006 to 2015. Retrospective cohort study. Veterans Healthcare System. Home-based primary care patients treated for UTI from 2006 to 2015. None. Appropriate therapy was determined based on the McGeer criteria. Multivariate logistic regression was used to determine factors leading to appropriate UTI treatment. Of 366 available patients, 68 (18.6%) were tested for a UTI. Appropriate therapy occurred in 26% of patients. Allergy to any antibiotic increased the odds of appropriate treatment (odds ratio [OR] = 5.6, 95% confidence interval [CI] 1.5-23.2). Flank pain and increased urinary frequency also increased the likelihood of being treated appropriately (OR = 25.9, 95% CI 2.9-584.0 and OR = 4.49, 95% CI 0.99-21.2, respectively). Antibiotics were overused for treating UTIs in the homebound population. Patients with flank pain, increased urinary frequency, and antibiotic allergy were more likely to receive appropriate treatment. Pharmacists, therefore, have a viable opportunity to increase appropriate antibiotic prescribing in the home-based primary care population.

Ion-Scale Wave Properties and Enhanced Ion Heating across the Magnetopause during Kelvin-Helmholtz Instability

NASA Astrophysics Data System (ADS)

Nykyri, K.; Moore, T.; Dimmock, A. P.

2017-12-01

In the Earth's magnetosphere, the magnetotail plasma sheet ions are much hotter than in the shocked solar wind. On the dawn-sector, the cold-component ions are more abundant and hotter by 30-40 percent when compared to the dusk sector. Recent statistical studies of the flank magnetopause and magnetosheath have shown that the level of temperature asymmetry of the magnetosheath is unable to account for this, so additional physical mechanisms must be at play, either at the magnetopause or plasma sheet that contribute to this asymmetry. In this study, we perform a statistical analysis on the ion-scale wave properties in the three main plasma regimes common to flank magnetopause boundary crossings when the boundary is unstable to KHI: hot and tenuous magnetospheric, cold and dense magnetosheath and mixed [Hasegawa 2004 et al., 2004]. These statistics of ion-scale wave properties are compared to observations of fast magnetosonic wave modes that have recently been linked to Kelvin-Helmholtz vortex centered ion heating [Moore et al., 2016]. The statistical analysis shows that during KH events there is enhanced non-adiabatic heating calculated during (temporal) ion scale wave intervals when compared to non-KH events.

Concurrent Preoperative Presence of Hydronephrosis and Flank Pain Independently Predicts Worse Outcome of Upper Tract Urothelial Carcinoma.

PubMed

Yeh, Hsin-Chih; Jan, Hau-Chern; Wu, Wen-Jeng; Li, Ching-Chia; Li, Wei-Ming; Ke, Hung-Lung; Huang, Shu-Pin; Liu, Chia-Chu; Lee, Yung-Chin; Yang, Sheau-Fang; Liang, Peir-In; Huang, Chun-Nung

2015-01-01

To investigate the impact of preoperative hydronephrosis and flank pain on prognosis of patients with upper tract urothelial carcinoma. In total, 472 patients with upper tract urothelial carcinoma managed by radical nephroureterectomy were included from Kaohsiung Medical University Hospital Healthcare System. Clinicopathological data were collected retrospectively for analysis. The significance of hydronephrosis, especially when combined with flank pain, and other relevant factors on overall and cancer-specific survival were evaluated. Of the 472 patients, 292 (62%) had preoperative hydronephrosis and 121 (26%) presented with flank pain. Preoperative hydronephrosis was significantly associated with age, hematuria, flank pain, tumor location, and pathological tumor stage. Concurrent presence of hydronephrosis and flank pain was a significant predictor of non-organ-confined disease (multivariate-adjusted hazard ratio = 2.10, P = 0.025). Kaplan-Meier analysis showed significantly poorer overall and cancer-specific survival in patients with preoperative hydronephrosis (P = 0.005 and P = 0.026, respectively) and in patients with flank pain (P < 0.001 and P = 0.001, respectively) than those without. However, only simultaneous hydronephrosis and flank pain independently predicted adverse outcome (hazard ratio = 1.98, P = 0.016 for overall survival and hazard ratio = 1.87, P = 0.036 for and cancer-specific survival, respectively) in multivariate Cox proportional hazards models. In addition, concurrent presence of hydronephrosis and flank pain was also significantly predictive of worse survival in patient with high grade or muscle-invasive disease. Notably, there was no difference in survival between patients with hydronephrosis but devoid of flank pain and those without hydronephrosis. Concurrent preoperative presence of hydronephrosis and flank pain predicted non-organ-confined status of upper tract urothelial carcinoma. When accompanied with flank pain, hydronephrosis represented an independent predictor for worse outcome in patients with upper tract urothelial carcinoma.

An atypical case of fragile X syndrome caused by a deletion that includes the FMR1 gene.

PubMed Central

Quan, F; Zonana, J; Gunter, K; Peterson, K L; Magenis, R E; Popovich, B W

1995-01-01

Fragile X syndrome is the most common form of inherited mental retardation and results from the transcriptional inactivation of the FMR1 gene. In the vast majority of cases, this is caused by the expansion of an unstable CGG repeat in the first exon of the FMR1 gene. We describe here a phenotypically atypical case of fragile X syndrome, caused by a deletion that includes the entire FMR1 gene and > or = 9.0 Mb of flanking DNA. The proband, RK, was a 6-year-old mentally retarded male with obesity and anal atresia. A diagnosis of fragile X syndrome was established by the failure of RK's DNA to hybridize to a 558-bp PstI-XhoI fragment (pfxa3) specific for the 5'-end of the FMR1 gene. The analysis of flanking markers in the interval from Xq26.3-q28 indicated a deletion extending from between 160-500 kb distal and 9.0 Mb proximal to the FMR1 gene. High-resolution chromosome banding confirmed a deletion with breakpoints in Xq26.3 and Xq27.3. This deletion was maternally transmitted and arose as a new mutation on the grandpaternal X chromosome. The maternal transmission of the deletion was confirmed by FISH using a 34-kb cosmid (c31.4) containing most of the FMR1 gene. These results indicated that RK carried a deletion of the FMR1 region with the most proximal breakpoint described to date. This patient's unusual clinical presentation may indicate the presence of genes located in the deleted interval proximal to the FMR1 locus that are able to modify the fragile X syndrome phenotype. Images Figure 5 Figure 2 Figure 4 Figure 6 Figure 7 PMID:7726157

DOE Office of Scientific and Technical Information (OSTI.GOV)

Quan, F.; Zonana, J.; Gunter, K.

Fragile X syndrome is the most common form of inherited mental retardation and results from the transcriptional inactivation of the FMR1 gene. In the vast majority of cases, this is caused by the expansion of an unstable CGG repeat in the first exon of the FMR1 gene. We describe here a phenotypically atypical case of fragile X syndrome, caused by a deletion that includes the entire FMR1 gene and {ge}9.0 Mb of flanking DNA. The proband, RK, was a 6-year-old mentally retarded male with obesity and anal atresia. A diagnosis of fragile X syndrome was established by the failure ofmore » RK`s DNA to hybridize to a 558-bp PstI-XhoI fragment (pfxa3) specific for the 5{prime}-end of the FMR1 gene. The analysis of flanking markers in the interval from Xq26.3-q28 indicated a deletion extending from between 160-500 kb distal and 9.0 Mb proximal to the FMR1 gene. High-resolution chromosome banding confirmed a deletion with breakpoints in Xq26.3 and Xq27.3. This deletion was maternally transmitted and arose as a new mutation on the grandpaternal X chromosome. The maternal transmission of the deletion was confirmed by FISH using a 34-kb cosmid (c31.4) containing most of the FMR1 gene. These results indicated that RK carried a deletion of the FMR1 region with the most proximal breakpoint described to date. This patient`s unusual clinical presentation may indicate the presence of genes located in the deleted interval proximal to the FMR1 locus that are able to modify the fragile X syndrome phenotype. 36 refs., 7 figs.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Brumbaugh, William D.; Cook, Kenneth L.

During the summers of 1975 and 1976, a gravity survey was conducted in the Cove Fort - Sulphurdale KGRA and north Mineral Mountains area, Millard and Beaver counties, Utah. The survey consisted of 671 gravity stations covering an area of about 1300 km{sup 2}, and included two orthogonal gravity profiles traversing the area. The gravity data are presented as a terrain-corrected Bouguer gravity anomaly map with a contour interval of 1 mgal and as an isometric three-dimensional gravity anomaly surface. Selected anomaly separation techniques were applied to the hand-digitized gravity data (at 1-km intervals on the Universal Transverse Mercator grid)more » in both the frequency and space domains, including Fourier decomposition, second vertical derivative, strike-filter, and polynomial fitting analysis, respectively. Residual gravity gradients of 0.5 to 8.0 mgal/km across north-trending gravity contours observed through the Cove Fort area, the Sulphurdale area, and the areas east of the East Mineral Mountains, along the west flanks of the Tushar Mountains, and on both the east and west flanks of the north Mineral Mountains, were attributed to north-trending Basin and Range high-angle faults. Gravity highs exist over the community of Black Rock area, the north Mineral Mountains, the Paleozoic outcrops in the east Cove Creek-Dog Valley-White Sage Flats areas, the sedimentary thrust zone of the southern Payant Range, and the East Mineral Mountains. The gravity lows over north Milford Valley, southern Black Rock Desert, Cunningham Wash, and northern Beaver Valley are separated from the above gravity highs by steep gravity gradients attributed to a combination of crustal warping and faulting. A gravity low with a closure of 2 mgal corresponds with Sulphur Cove, a circular topographic features containing sulphur deposits.« less

Evidence of flank failure deposit reactivation in a shield volcano. A favorable context for deep-seated landslide activation (La Réunion Island)

NASA Astrophysics Data System (ADS)

Belle, Pierre; Aunay, Bertrand; Famin, Vincent; Join, Jean-Lambert

2014-05-01

Giant flank failures are recurrent features of shield volcanoes, and their deposits (i.e. breccia), constitute a significant volume in a volcanic edifice. On La Réunion Island, the growth and development of Piton des Neiges volcano has been punctuated by several flank failure episodes. One of these failures is a deep-seated landslide (>200 Mm3) occurring nowadays in Grand Ilet, a plateau inhabited by 1 000 people in the cirque of Salazie, on the northern flank of Piton des Neiges. Here we present the results of a multidisciplinary study (structural geology and field mapping, GNSS monitoring, borehole logging) performed to characterize the geological structure the Grand Ilet landslide, and identify the instability factors that control this category of destabilization. Basic breccia deposits, up to 160 meters thick, constitute the main geological formation of the unstable mass. This breccia are cut by the headwall scar of the landslide, and covered by lava flows, indicating a minimum age of 200 kyr for the destabilization that produced the deposits. The breccia is consolidated out of the landslide area. The NE toe of the landslide is evidenced by an important compressional deformation of the base of the breccia, and striated surfaces in this deformed volume indicate a NE-direction of transport. In this deformed bulge, a clay-rich layer at the base of the breccia has been identified as the main slip plane. Using a video inspection of drill casings on three exploration boreholes, we reconstructed the 3D geometry of the slip plane at the base of the breccia. This reconstruction shows that the landslide plane has an average dip of 6° toward the NE. The displacement monitoring network shows that the unstable mass has a 5.5 km2 extension, with a variable azimuth of movement direction (N140° for the SW sector, and N45° for the NE sector). The planimetric displacements velocities range between 2 cm/year in the inner part of the unstable mass to 52 cm/year at the landslide toe. The dip of displacement vectors vary from 34° ± 9 uphill to 7° ± 2 downhill near the landslide toe. This displacement field, the topography and the drill casings inspection show that secondary shear zones are located inside the landslide mass, characterized by a lower deformation rate than the basal shear zone. However heterogeneous is the deformation, it more important at the base of the breccia (locally in the clay layer). Ultimately, our study suggests that the main slip plane has localized at the base of the breccia despite its induration. Thus we conclude that the Grand Ilet landslide is in fact a present-day reactivation of an old destabilization.

Seafloor Age-Stacking Reveals No Evidence for Milankovitch Cycle Influence on Abyssal Hills at Intermediate, Fast and Super-Fast Spreading Rates

NASA Astrophysics Data System (ADS)

Goff, J.; Zahirovic, S.; Müller, D.

2017-12-01

Recently published spectral analyses of seafloor bathymetry concluded that abyssal hills, highly linear ridges that are formed along seafloor spreading centers, exhibit periodicities that correspond to Milankovitch cycles - variations in Earth's orbit that affect climate on periods of 23, 41 and 100 thousand years. These studies argue that this correspondence could be explained by modulation of volcanic output at the mid-ocean ridge due to lithostatic pressure variations associated with rising and falling sea level. If true, then the implications are substantial: mapping the topography of the seafloor with sonar could be used as a way to investigate past climate change. This "Milankovitch cycle" hypothesis predicts that the rise and fall of abyssal hills will be correlated to crustal age, which can be tested by stacking, or averaging, bathymetry as a function of age; stacking will enhance any age-dependent signal while suppressing random components, such as fault-generated topography. We apply age-stacking to data flanking the Southeast Indian Ridge ( 3.6 cm/yr half rate), northern East Pacific Rise ( 5.4 cm/yr half rate) and southern East Pacific Rise ( 7.8 cm/yr half rate), where multibeam bathymetric coverage is extensive on the ridge flanks. At the greatest precision possible given magnetic anomaly data coverage, we have revised digital crustal age models in these regions with updated axis and magnetic anomaly traces. We also utilize known 2nd-order spatial statistical properties of abyssal hills to predict the variability of the age-stack under the null hypothesis that abyssal hills are entirely random with respect to crustal age; the age-stacked profile is significantly different from zero only if it exceeds this expected variability by a large margin. Our results indicate, however, that the null hypothesis satisfactorily explains the age-stacking results in all three regions of study, thus providing no support for the Milankovitch cycle hypothesis. The random nature of abyssal hills is consistent with a primarily faulted origin. .

Aberrant interchromosomal exchanges are the predominant cause of the 22q11.2 deletion

PubMed Central

Saitta, Sulagna C.; Harris, Stacy E.; Gaeth, Ann P.; Driscoll, Deborah A.; McDonald-McGinn, Donna M.; Maisenbacher, Melissa K.; Yersak, Jill M.; Chakraborty, Prabir K.; Hacker, April M.; Zackai, Elaine H.; Ashley, Terry; Emanuel, Beverly S.

2010-01-01

Chromosome 22q11.2 deletions are found in almost 90% of patients with DiGeorge/velocardiofacial syndrome (DGS/VCFS). Large, chromosome-specific low copy repeats (LCRs), flanking and within the deletion interval, are presumed to lead to misalignment and aberrant recombination in meiosis resulting in this frequent microdeletion syndrome. We traced the grandparental origin of regions flanking de novo 3 Mb deletions in 20 informative three-generation families. Haplotype reconstruction showed an unexpectedly high number of proximal interchromosomal exchanges between homologs, occurring in 19/20 families. Instead, the normal chromosome 22 in these probands showed interchromosomal exchanges in 2/15 informative meioses, a rate consistent with the genetic distance. Meiotic exchanges, visualized as MLH1 foci, localize to the distal long arm of chromosome 22 in 75% of human spermatocytes tested, also reflecting the genetic map. Additionally, we found no effect of proband gender or parental age on the crossover frequency. Parental origin studies in 65 de novo 3 Mb deletions (including these 20 patients) demonstrated no bias. Unlike Williams syndrome, we found no chromosomal inversions flanked by LCRs in 22 sets of parents of 22q11 deleted patients, or in eight non-deleted patients with a DGS/VCFS phenotype using FISH. Our data are consistent with significant aberrant interchromosomal exchange events during meiosis I in the proximal region of the affected chromosome 22 as the likely etiology for the deletion. This type of exchange occurs more often than is described for deletions of chromosomes 7q11, 15q11, 17p11 and 17q11, implying a difference in the meiotic behavior of chromosome 22. PMID:14681306

Concurrent Preoperative Presence of Hydronephrosis and Flank Pain Independently Predicts Worse Outcome of Upper Tract Urothelial Carcinoma

PubMed Central

Yeh, Hsin-Chih; Jan, Hau-Chern; Wu, Wen-Jeng; Li, Ching-Chia; Li, Wei-Ming; Ke, Hung-Lung; Huang, Shu-Pin; Liu, Chia-Chu; Lee, Yung-Chin; Yang, Sheau-Fang; Liang, Peir-In; Huang, Chun-Nung

2015-01-01

Objectives To investigate the impact of preoperative hydronephrosis and flank pain on prognosis of patients with upper tract urothelial carcinoma. Methods In total, 472 patients with upper tract urothelial carcinoma managed by radical nephroureterectomy were included from Kaohsiung Medical University Hospital Healthcare System. Clinicopathological data were collected retrospectively for analysis. The significance of hydronephrosis, especially when combined with flank pain, and other relevant factors on overall and cancer-specific survival were evaluated. Results Of the 472 patients, 292 (62%) had preoperative hydronephrosis and 121 (26%) presented with flank pain. Preoperative hydronephrosis was significantly associated with age, hematuria, flank pain, tumor location, and pathological tumor stage. Concurrent presence of hydronephrosis and flank pain was a significant predictor of non-organ-confined disease (multivariate-adjusted hazard ratio = 2.10, P = 0.025). Kaplan-Meier analysis showed significantly poorer overall and cancer-specific survival in patients with preoperative hydronephrosis (P = 0.005 and P = 0.026, respectively) and in patients with flank pain (P < 0.001 and P = 0.001, respectively) than those without. However, only simultaneous hydronephrosis and flank pain independently predicted adverse outcome (hazard ratio = 1.98, P = 0.016 for overall survival and hazard ratio = 1.87, P = 0.036 for and cancer-specific survival, respectively) in multivariate Cox proportional hazards models. In addition, concurrent presence of hydronephrosis and flank pain was also significantly predictive of worse survival in patient with high grade or muscle-invasive disease. Notably, there was no difference in survival between patients with hydronephrosis but devoid of flank pain and those without hydronephrosis. Conclusion Concurrent preoperative presence of hydronephrosis and flank pain predicted non-organ-confined status of upper tract urothelial carcinoma. When accompanied with flank pain, hydronephrosis represented an independent predictor for worse outcome in patients with upper tract urothelial carcinoma. PMID:26469704

Rift-Related Sediments of the Passive Continental Margin of the Paleo-Asian Ocean (Baikal Segment)

NASA Astrophysics Data System (ADS)

Mazukabzov, A. M.; Stanevich, A. M.; Gladkochub, D. P.; Donskaya, T. V.; Khubanov, V. B.; Motova, Z. L.; Kornilova, T. A.

2018-02-01

The geological position, composition, and age of detrital zircons of sedimentary deposits of the Nugan Formation of the Western Baikal region underlying the Golousta Formation of the Baikal series of Ediacaran age have been studied. The formation of both stratigraphic units due to the same sources of detrital material, located within the southern flank of the Siberian Craton, has been proved. The deposits of the Nugan Formation have been demonstrated to mark the rifting stage of the formation of the passive margin of the Paleo-Asiatic Ocean: their accumulation occurred in the Late Cryogenian during the interval 720-640 Ma.

Absence of Interference in Association with Gene Conversion in SORDARIA FIMICOLA, and Presence of Interference in Association with Ordinary Recombination

PubMed Central

Kitani, Y.

1978-01-01

From the analysis of large samples of gene conversion asci in the g locus of Sordaria fimicola, it was found that neither the conversion event itself nor conversion-associated recombination of flanking markers cause either chiasma or chromatid interference with crossing over in a neighboring interval. The presence of more than one kind of crossover event, one causing interference the other not, is considered. The existence of two kinds of gene loci, one of single-cistron composition and the other of multiple-cistron composition, is discussed in relation to reciprocal recombination within a locus. PMID:17176535

Absence of interference in association with gene conversion in Sordaria fimicola, and presence of interference in association with ordinary recombination.

PubMed

Kitani, Y

1978-07-01

From the analysis of large samples of gene conversion asci in the g locus of Sordaria fimicola, it was found that neither the conversion event itself nor conversion-associated recombination of flanking markers cause either chiasma or chromatid interference with crossing over in a neighboring interval. The presence of more than one kind of crossover event, one causing interference the other not, is considered. The existence of two kinds of gene loci, one of single-cistron composition and the other of multiple-cistron composition, is discussed in relation to reciprocal recombination within a locus.

The spectrum of persistent volcanic flank instability: A review and proposed framework based on Kīlauea, Piton de la Fournaise, and Etna

USGS Publications Warehouse

Poland, Michael; Peltier, Aline; Bonaforte, Alessandro; Puglisi, Giuseppe

2017-01-01

Persistent motion of the south flank of Kīlauea Volcano, Hawai'i, has been known for several decades, but has only recently been identified at other large basaltic volcanoes—namely Piton de la Fournaise (La Réunion) and Etna (Sicily)—thanks to the advent of space geodetic techniques. Nevertheless, understanding of long-term flank instability is based largely on the example of Kīlauea, despite the large differences in the manifestations and mechanisms of the process when viewed through a comparative lens. For example, the rate of flank motion at Kīlauea is several times that of Etna and Piton de la Fournaise and is accommodated on a slip plane several km deeper than is probably present at the other two volcanoes. Gravitational spreading also appears to be the dominant driving force at Kīlauea, given the long-term steady motion of the volcano's south flank regardless of eruptive/intrusive activity, whereas magmatic activity plays a larger role in flank deformation at Etna and Piton de la Fournaise. Kīlauea and Etna, however, are both characterized by heavily faulted flanks, while Piton de la Fournaise shows little evidence for flank faulting. A helpful means of understanding the spectrum of persistent flank motion at large basaltic edifices may be through a framework defined on one hand by magmatic activity (which encompasses both magma supply and edifice size), and on the other hand by the structural setting of the volcano (especially the characteristics of the subvolcanic basement or subhorizontal intravolcanic weak zones). A volcano's size and magmatic activity will dictate the extent to which gravitational and magmatic forces can drive motion of an unstable flank (and possibly the level of faulting of that flank), while the volcano's structural setting governs whether or not a plane of weakness exists beneath or within the edifice and can facilitate flank slip. Considering persistent flank instability using this conceptual model is an alternative to using a single volcano as a “type example”—especially given that the example is usually Kīlauea, which defines an extreme end of the spectrum—and can provide a basis for understanding why flank motion may or may not exist on other large basaltic volcanoes worldwide.

The spectrum of persistent volcanic flank instability: A review and proposed framework based on Kīlauea, Piton de la Fournaise, and Etna

NASA Astrophysics Data System (ADS)

Poland, Michael P.; Peltier, Aline; Bonforte, Alessandro; Puglisi, Giuseppe

2017-06-01

Persistent motion of the south flank of Kīlauea Volcano, Hawai'i, has been known for several decades, but has only recently been identified at other large basaltic volcanoes-namely Piton de la Fournaise (La Réunion) and Etna (Sicily)-thanks to the advent of space geodetic techniques. Nevertheless, understanding of long-term flank instability is based largely on the example of Kīlauea, despite the large differences in the manifestations and mechanisms of the process when viewed through a comparative lens. For example, the rate of flank motion at Kīlauea is several times that of Etna and Piton de la Fournaise and is accommodated on a slip plane several km deeper than is probably present at the other two volcanoes. Gravitational spreading also appears to be the dominant driving force at Kīlauea, given the long-term steady motion of the volcano's south flank regardless of eruptive/intrusive activity, whereas magmatic activity plays a larger role in flank deformation at Etna and Piton de la Fournaise. Kīlauea and Etna, however, are both characterized by heavily faulted flanks, while Piton de la Fournaise shows little evidence for flank faulting. A helpful means of understanding the spectrum of persistent flank motion at large basaltic edifices may be through a framework defined on one hand by magmatic activity (which encompasses both magma supply and edifice size), and on the other hand by the structural setting of the volcano (especially the characteristics of the subvolcanic basement or subhorizontal intravolcanic weak zones). A volcano's size and magmatic activity will dictate the extent to which gravitational and magmatic forces can drive motion of an unstable flank (and possibly the level of faulting of that flank), while the volcano's structural setting governs whether or not a plane of weakness exists beneath or within the edifice and can facilitate flank slip. Considering persistent flank instability using this conceptual model is an alternative to using a single volcano as a "type example"-especially given that the example is usually Kīlauea, which defines an extreme end of the spectrum-and can provide a basis for understanding why flank motion may or may not exist on other large basaltic volcanoes worldwide.

Marker-Assisted Introgression in Backcross Breeding Programs

PubMed Central

Visscher, P. M.; Haley, C. S.; Thompson, R.

1996-01-01

The efficiency of marker-assisted introgression in backcross populations derived from inbred lines was investigated by simulation. Background genotypes were simulated assuming that a genetic model of many genes of small effects in coupling phase explains the observed breed difference and variance in backcross populations. Markers were efficient in introgression backcross programs for simultaneously introgressing an allele and selecting for the desired genomic background. Using a marker spacing of 10-20 cM gave an advantage of one to two backcross generations selection relative to random or phenotypic selection. When the position of the gene to be introgressed is uncertain, for example because its position was estimated from a trait gene mapping experiment, a chromosome segment should be introgressed that is likely to include the allele of interest. Even for relatively precisely mapped quantitative trait loci, flanking markers or marker haplotypes should cover ~10-20 cM around the estimated position of the gene, to ensure that the allele frequency does not decline in later backcross generations. PMID:8978075

Final Pleistocene and Holocene pollen stratigraphic sequence from the Cloquet River area, St. Louis Co. , NE Minnesota

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hill, C.L.; Rapp, G.R. Jr.; Huber, J.K.

A five-meter pollen sequence from a bog has been studied as part of a project concerned with the late-Quaternary paleoenvironmental setting and prehistory of northeastern Minnesota. The stratigraphic sequence is situated on an outwash plain derived from the Automba phase of glaciation (ca. 15,000 B.P.) and is located near a series of surface archaeological localities containing possible late Paleoindian lithic assemblages. Loss-on-ignition and particle size analyses reveal that the top section of the core, to a depth of about 350 cm, is composed predominantly of organics, the remaining 150 cm is dominated by mud. Radicarbon ages of 9270 +/- 190more » B.P. (UCR-1825) for the 350-355 cm interval, and 9420 +/- 180 (UCR-1826) for the 350-364 cm interval, were obtained. Data derived from pollen counts made at 20 cm intervals throughout the sequence indicate the core can be divided into several pollen-stratigraphic zones. The lowest zone, from the base of the core to about 440 cm, contains Cyperaceae (initially at about 60% total pollen) and is also characterized by Picea and Salix. (ca5%). Above this, there is a zone which ends at about 360 cm and contains a Betula peak (>65%). These two zones are considered to reflect the presence of tundra-like and dwarf-birch tundra vegetational regimes in the area during the late Pleistocene. Several pollen stratigraphic zones above 360 cm provide an indication of the Holocene vegetational setting, and show the increasing dominance of Pinus. The paleoenvironmental record obtained from this core, along with studies of the geologic setting, late Quaternary glacial sequence, and physiographic situation of archaeological localities, may help to elucidate the conditions prevalent during this time and provide a basis for a clearer understanding of the prehistoric ecology of northeastern Minnesota.« less

Molecular evidence that the genes for dioecism and monoecism in Spinacia oleracea L. are located at different loci in a chromosomal region

PubMed Central

Yamamoto, K; Oda, Y; Haseda, A; Fujito, S; Mikami, T; Onodera, Y

2014-01-01

Spinach (Spinacia oleracea L.) is widely known to be dioecious. However, monoecious plants can also occur in this species. Sex expression in dioecious spinach plants is controlled by a single gene pair termed X and Y. Our previous study showed that a single, incompletely dominant gene, which controls the monoecious condition in spinach line 03–336, should be allelic or linked to X/Y. Here, we developed 19 AFLP markers closely linked to the monoecious gene. The AFLP markers were mapped to a 38.2-cM chromosomal region that included the monoecious gene, which is bracketed between flanking markers with a distance of 7.1 cM. The four AFLP markers developed in our studies were converted into sequence-characterized amplified region (SCAR) markers, which are linked to both the monoecious gene and Y and are common to both populations segregating for the genes. Linkage analysis using the SCAR markers suggested that the monoecious gene (M) and Y are located in different intervals, between different marker pairs. Analysis of populations segregating for both M and Y also directly demonstrates linkage of the genes at a distance of ∼12 cM. The data presented in this study may be useful for breeding dioecious and highly male monoecious lines utilized as the pollen parents for hybrid seed production, as well as for studies of the evolutionary history of sexual systems in this species, and can provide a molecular basis for positional cloning of the sex-determining genes. PMID:24169648

Fine mapping and identification of a candidate gene for the barley Un8 true loose smut resistance gene.

PubMed

Zang, Wen; Eckstein, Peter E; Colin, Mark; Voth, Doug; Himmelbach, Axel; Beier, Sebastian; Stein, Nils; Scoles, Graham J; Beattie, Aaron D

2015-07-01

The candidate gene for the barley Un8 true loose smut resistance gene encodes a deduced protein containing two tandem protein kinase domains. In North America, durable resistance against all known isolates of barley true loose smut, caused by the basidiomycete pathogen Ustilago nuda (Jens.) Rostr. (U. nuda), is under the control of the Un8 resistance gene. Previous genetic studies mapped Un8 to the long arm of chromosome 5 (1HL). Here, a population of 4625 lines segregating for Un8 was used to delimit the Un8 gene to a 0.108 cM interval on chromosome arm 1HL, and assign it to fingerprinted contig 546 of the barley physical map. The minimal tilling path was identified for the Un8 locus using two flanking markers and consisted of two overlapping bacterial artificial chromosomes. One gene located close to a marker co-segregating with Un8 showed high sequence identity to a disease resistance gene containing two kinase domains. Sequence of the candidate gene from the parents of the segregating population, and in an additional 19 barley lines representing a broader spectrum of diversity, showed there was no intron in alleles present in either resistant or susceptible lines, and fifteen amino acid variations unique to the deduced protein sequence in resistant lines differentiated it from the deduced protein sequences in susceptible lines. Some of these variations were present within putative functional domains which may cause a loss of function in the deduced protein sequences within susceptible lines.

Bis(thienothiophenyl) diketopyrrolopyrrole-based conjugated polymers with various branched alkyl side chains and their applications in thin-film transistors and polymer solar cells.

PubMed

Shin, Jicheol; Park, Gi Eun; Lee, Dae Hee; Um, Hyun Ah; Lee, Tae Wan; Cho, Min Ju; Choi, Dong Hoon

2015-02-11

New thienothiophene-flanked diketopyrrolopyrrole and thiophene-containing π-extended conjugated polymers with various branched alkyl side-chains were successfully synthesized. 2-Octyldodecyl, 2-decyltetradecyl, 2-tetradecylhexadecyl, 2-hexadecyloctadecyl, and 2-octadecyldocosyl groups were selected as the side-chain moieties and were anchored to the N-positions of the thienothiophene-flanked diketopyrrolopyrrole unit. All five polymers were found to be soluble owing to the bulkiness of the side chains. The thin-film transistor based on the 2-tetradecylhexadecyl-substituted polymer showed the highest hole mobility of 1.92 cm2 V(-1) s(-1) due to it having the smallest π-π stacking distance between the polymer chains, which was determined by grazing incidence X-ray diffraction. Bulk heterojunction polymer solar cells incorporating [6,6]-phenyl-C71-butyric acid methyl ester as the n-type molecule and the additive 1,8-diiodooctane (1 vol %) were also constructed from the synthesized polymers without thermal annealing; the device containing the 2-octyldodecyl-substituted polymer exhibited the highest power conversion efficiency of 5.8%. Although all the polymers showed similar physical properties, their device performance was clearly influenced by the sizes of the branched alkyl side-chain groups.

Electropermeabilization by uni- or bipolar nanosecond electric pulses: The impact of extracellular conductivity.

PubMed

Gianulis, Elena C; Casciola, Maura; Xiao, Shu; Pakhomova, Olga N; Pakhomov, Andrei G

2018-02-01

Cellular effects caused by nanosecond electric pulses (nsEP) can be reduced by an electric field reversal, a phenomenon known as bipolar cancellation. The reason for this cancellation effect remains unknown. We hypothesized that assisted membrane discharge is the mechanism for bipolar cancellation. CHO-K1 cells bathed in high (16.1mS/cm; HCS) or low (1.8mS/cm; LCS) conductivity solutions were exposed to either one unipolar (300-ns) or two opposite polarity (300+300-ns; bipolar) nsEP (4-40kV/cm) with increasing interpulse intervals (0.1-50μs). Time-lapse YO-PRO-1 (YP) uptake revealed enhanced membrane permeabilization in LCS compared to HCS at all tested voltages. The time-dependence of bipolar cancellation was similar in both solutions, using either identical (22kV/cm) or isoeffective nsEP treatments (12 and 32kV/cm for LCS and HCS, respectively). However, cancellation was significantly stronger in LCS when the bipolar nsEP had no, or very short (<1μs), interpulse intervals. Finally, bipolar cancellation was still present with interpulse intervals as long as 50μs, beyond the time expected for membrane discharge. Our findings do not support assisted membrane discharge as the mechanism for bipolar cancellation. Instead they exemplify the sustained action of nsEP that can be reversed long after the initial stimulus. Copyright © 2017 Elsevier B.V. All rights reserved.

Preliminary genetic linkage map of the abalone Haliotis diversicolor Reeve

NASA Astrophysics Data System (ADS)

Shi, Yaohua; Guo, Ximing; Gu, Zhifeng; Wang, Aimin; Wang, Yan

2010-05-01

Haliotis diversicolor Reeve is one of the most important mollusks cultured in South China. Preliminary genetic linkage maps were constructed with amplified fragment length polymorphism (AFLP) markers. A total of 2 596 AFLP markers were obtained from 28 primer combinations in two parents and 78 offsprings. Among them, 412 markers (15.9%) were polymorphic and segregated in the mapping family. Chi-square tests showed that 151 (84.4%) markers segregated according to the expected 1:1 Mendelian ratio ( P<0.05) in the female parent, and 200 (85.8%) in the male parent. For the female map, 179 markers were used for linkage analysis and 90 markers were assigned to 17 linkage groups with an average interval length of 25.7 cm. For the male map, 233 markers were used and 94 were mapped into 18 linkage groups, with an average interval of 25.0 cm. The estimated genome length was 2 773.0 cm for the female and 2 817.1 cm for the male map. The observed length of the linkage map was 1 875.2 cm and 1 896.5 cm for the female and male maps, respectively. When doublets were considered, the map length increased to 2 152.8 cm for the female and 2 032.7 cm for the male map, corresponding to genome coverage of 77.6% and 72.2%, respectively.

Changes in surface temperature at Taal Volcano, Philippines 1965-1966

USGS Publications Warehouse

Moxham, R.M.

1967-01-01

Taal Volcano erupted in September 1965 ending a dormant period of 54 years. A quiescent interval of 9 months followed, terminated by new eruptions in July 1966 at the same site. Aerial surveys with a scanning infrared radiometer were made at three periods during the quiescent interval and twice following the July 1966 eruption. The survey technique yields a quasiphotographic image of the radiant temperature of the volcanic terrain. Results indicate that the principal changes in surface temperature stemmed from changes in convective heat transfer by hydrothermal fluids. New hot springs developed along the structurally-controlled northwest and southeast flanks of the 1965 explosion crater. The northwest spring grew in size prior to the 1966 eruption, persisted through that eruption and has since maintained its discharge. The 1965 cinder cone meanwhile showed a persistent rim of hydrothermal activity with some shift in position of maximum discharge. The July 1966 eruptions took place on the rim about midway between two positions of maximum discharge.

Flank pain

MedlinePlus

Pain - side; Side pain ... Flank pain can be a sign of a kidney problem. But, since many organs are in this area, other causes are possible. If you have flank pain and fever , chills, blood in the urine, or ...

[Embryo volume estimated by three-dimensional ultrasonography at seven to ten weeks of pregnancy].

PubMed

Filho, João Bortoletti; Nardozza, Luciano Marcondes Machado; Araujo Júnior, Edward; Rôlo, Líliam Cristine; Nowak, Paulo Martin; Moron, Antonio Fernandes

2008-10-01

to evaluate the embryo's volume (EV) between the seventh and the tenth gestational week, through tridimensional ultrasonography. a transversal study with 63 normal pregnant women between the seventh and the tenth gestational week. The ultrasonographical exams have been performed with a volumetric abdominal transducer. Virtual Organ Computer-aided Analysis (VOCAL) has been used to calculate EV, with a rotation angle of 12 masculine and a delimitation of 15 sequential slides. The average, median, standard deviation and maximum and minimum values have been calculated for the EV in all the gestational ages. A dispersion graphic has been drawn to assess the correlation between EV and the craniogluteal length (CGL), the adjustment being done by the determination coefficient (R(2)). To determine EV's reference intervals as a function of the CGL, the following formula was used: percentile=EV+K versus SD, with K=1.96. CGL has varied from 9.0 to 39.7 mm, with an average of 23.9 mm (+/-7.9 mm), while EV has varied from 0.1 to 7.6 cm(3), with an average of 2.7 cm(3) (+/-3.2 cm(3)). EV was highly correlated to CGL, the best adjustment being obtained with quadratic regression (EV=0.2-0.055 versus CGL+0.005 versus CGL(2); R(2)=0.8). The average EV has varied from 0.1 (-0.3 to 0.5 cm(3)) to 6.7 cm(3) (3.8 to 9.7 cm(3)) within the interval of 9 to 40 mm of CGL. EV has increased 67 times in this interval, while CGL, only 4.4 times. EV is a more sensitive parameter than CGL to evaluate embryo growth between the seventh and the tenth week of gestation.

Relationship between electron field-aligned anisotropy and dawn-dusk magnetic field: Nine years of Cluster observations in the Earth magnetotail

NASA Astrophysics Data System (ADS)

Yushkov, E.; Petrukovich, A.; Artemyev, A.; Nakamura, R.

2017-09-01

We investigate the distribution and possible origins of thermal anisotropic electrons in the Earth's magnetotail, using 9 years of Cluster observations. We mainly focus on relation between electron anisotropy and Bz and By magnetic field components (in GSM coordinates). The anisotropy of electron population is characterized by temperature ratio T∥/T⊥ and by the maximum of phase space density ratio F∥/F⊥ (∥ and ⊥ are relative to the background magnetic field). The population identified by large F∥/F⊥ is organized as short-time (dozens of seconds) bursts with enhanced F∥ and can be observed even in the plasma sheet with small T∥/T⊥. The thermal anisotropy T∥/T⊥ is larger for time intervals characterized by stronger Bz and By: the strong By corresponds to the T∥/T⊥ peak around the magnetotail neutral plane Bx=0, whereas the strong Bz corresponds to larger T∥/T⊥ with a flat profile across the magnetotail. There is a dawn-dusk asymmetry: large T∥/T⊥ corresponds mostly to strong Bz at the dusk flank and to strong By at the dawn flank. Using these differences of the electron anisotropy dependence on By and Bz, we discuss two possible mechanisms responsible for the anisotropy formation.

A romifidine and morphine combination for epidural analgesia of the flank in cattle

PubMed Central

2004-01-01

Abstract The objective of the study reported here was to determine the onset, duration, and degree of analgesia achieved with a combination of romifidine (50 μg/kg body weight [BW]) and morphine (0.1 mg/kg BW) administered epidurally. Ten adult Holstein Friesen cows were assigned to either a treatment group receiving the romifidine and morphine combination or a control group receiving 0.9% saline in a randomized, blinded, crossover design. Cows were assessed for degree of flank analgesia and systemic sedation at various time intervals over a period of 24 hours. The romifidine and morphine combination, compared with saline, provided significant analgesia for at least 10 minutes (P = 0.016) and up to 12 hours (P = 0.004) after epidural administration. Treated cows were sedate between 10 minutes (P = 0.016) and 6 hours (P = 0.002) after epidural administration. These results provide evidence for a potential cost-effective intra- and postoperative method of analgesia; however, the sedation seen in this study could be detrimental to patients expected return to the farm shortly after surgery. Further research into withdrawal times, systemic effects, and potential adverse effects are needed before an opiod and α2-adrenergic agonist combination can be used safely in a clinical setting PMID:15600157

Relationship between linear type and fertility traits in Nguni cows.

PubMed

Zindove, T J; Chimonyo, M; Nephawe, K A

2015-06-01

The objective of the study was to assess the dimensionality of seven linear traits (body condition score, body stature, body length, heart girth, navel height, body depth and flank circumference) in Nguni cows using factor analysis and indicate the relationship between the extracted latent variables and calving interval (CI) and age at first calving (AFC). The traits were measured between December 2012 and November 2013 on 1559 Nguni cows kept under thornveld, succulent karoo, grassland and bushveld vegetation types. Low partial correlations (-0.04 to 0.51), high Kaiser statistic for measure of sampling adequacy scores and significance of the Bartlett sphericity test (P1. Factor 1 included body condition score, body depth, flank circumference and heart girth and represented body capacity of cows. Factor 2 included body length, body stature and navel height and represented frame size of cows. CI and AFC decreased linearly with increase of factor 1. There was a quadratic increase in AFC as factor 2 increased (P<0.05). It was concluded that the linear type traits under study can be grouped into two distinct factors, one linked to body capacity and the other to the frame size of the cows. Small-framed cows with large body capacities have shorter CI and AFC.

Assessment of Postoperative Pain in Cats After Ovariectomy by Laparoscopy, Median Celiotomy, or Flank Laparotomy.

PubMed

Gauthier, Olivier; Holopherne-Doran, Delphine; Gendarme, Thalia; Chebroux, Alexandre; Thorin, Chantal; Tainturier, Daniel; Bencharif, Djemil

2015-07-01

To compare postoperative pain, duration of surgery, and duration of anesthesia for 3 methods of ovariectomy in cats: (1) conventional ventral median open approach (Midline), (2) right flank approach (Flank), and (3) median 2-portal laparoscopic procedure (Lap). Randomized, prospective clinical trial. Healthy, sexually intact female cats (n = 60). Cats were randomly assigned to 1 of 3 groups: Midline (n = 20), Flank (20), and Lap (20) were evaluated 1, 2, 4, 6, and 12 hours after endotracheal extubation. Postoperative pain was scored using the 4A-vet pain scale that combines a subjective numerical pain rating and objective scoring of physiologic and behavioral variables including the response to stimulation of the surgical site. Pain scores (PS) were compared between groups. There was a significant difference in the PS between groups. PS for Midline and Flank were not significantly different but were both significantly higher compared with Lap. Depending on time, 5-20% of the cats had intense postoperative pain in both Midline and Flank groups. None of the Lap cats had intense postoperative pain. Laparoscopic ovariectomy, although slower, appeared less painful compared with conventional ventral midline and flank ovariectomy. Postoperative pain did not differ significantly between midline and flank groups. © Copyright 2014 by The American College of Veterinary Surgeons.

The effect of giant flank collapses on magma pathways and location of volcanic vents

NASA Astrophysics Data System (ADS)

Maccaferri, Francesco; Richter, Nicole; Walter, Thomas

2017-04-01

Flank collapses have been identified at tall volcanoes and ocean islands worldwide. They are recurrent processes, significantly contributing to the morphological and structural evolution of volcanic edifices, and they often occur in interaction with magmatic activity. Moreover, it has been observed that the intrusion pathways and eruption's sites often differ before and after flank collapses. While it is understood that dyke intrusions might destabilise a volcano flank, and a moving flank might create the space needed for further intrusions, the effect of collapses on the magma pathways has been rarely addressed. Here we use a boundary element model for dyke propagation to study the effect of the stress redistribution due to a flank collapse on the location of eruptive vents. We use our model to simulate the path of magmatic intrusion after the collapse of the eastern flank of Fogo Volcano, Cabe Verde. We find that the competition between loading stress due to the volcanic edifice and unloading due to the collapse of a flank favours magmatic activity to cluster within the collapse scar, displaced with respect to the pre-collapse volcanic centre. Our results are compared with geomorphological observations at Fogo Island and are discussed in the general context of the long-term evolution intraplate volcanic ocean islands worldwide.

Rapid deformation of the South flank of kilauea volcano, hawaii.

PubMed

Owen, S; Segall, P; Freymueller, J; Mikijus, A; Denlinger, R; Arnadóttir, T; Sako, M; Bürgmann, R

1995-03-03

The south flank of Kilauea volcano has experienced two large [magnitude (M) 7.2 and M 6.1] earthquakes in the past two decades. Global Positioning System measurements conducted between 1990 and 1993 reveal seaward displacements of Kilauea's central south flank at rates of up to about 10 centimeters per year. In contrast, the northern side of the volcano and the distal ends of the south flank did not displace significantly. The observations can be explained by slip on a low-angle fault beneath the south flank combined with dilation deep within Kilauea's rift system, both at rates of at least 15 centimeters per year.

Swimming performance in juvenile shortnose sturgeon (Acipenser brevirostrum): the influence of time interval and velocity increments on critical swimming tests

PubMed Central

Kieffer, James D.

2017-01-01

Abstract The most utilized method to measure swimming performance of fishes has been the critical swimming speed (UCrit) test. In this test, the fish is forced to swim against an incrementally increasing flow of water until fatigue. Before the water velocity is increased, the fish swims at the water velocity for a specific, pre-arranged time interval. The magnitude of the velocity increments and the time interval for each swimming period can vary across studies making the comparison between and within species difficult. This issue has been acknowledged in the literature, however, little empirical evidence exists that tests the importance of velocity and time increments on swimming performance in fish. A practical application for fish performance is through the design of fishways that enable fish to bypass anthropogenic structures (e.g. dams) that block migration routes, which is one of the causes of world-wide decline in sturgeon populations. While fishways will improve sturgeon conservation, they need to be specifically designed to accommodate the swimming capabilities specific for sturgeons, and it is possible that current swimming methodologies have under-estimated the swimming performance of sturgeons. The present study assessed the UCrit of shortnose sturgeon using modified UCrit to determine the importance of velocity increment (5 and 10 cm s−1) and time (5, 15 and 30 min) intervals on swimming performance. UCrit was found to be influenced by both time interval and water velocity. UCrit was generally lower in sturgeon when they were swum using 5cm s−1 compared with 10 cm s−1 increments. Velocity increment influences the UCrit more than time interval. Overall, researchers must consider the impacts of using particular swimming criteria when designing their experiments. PMID:28835841

The Friedreich ataxia critical region spans a 150-kb interval on chromosome 9q13

DOE Office of Scientific and Technical Information (OSTI.GOV)

Montermini, L.; Zara, F.; Patel, P.I.

1995-11-01

By analysis of crossovers in key recombinant families and by homozygosity analysis of inbred families, the Friedreich ataxia (FRDA) locus was localized in a 300-kb interval between the X104 gene and the microsatellite marker FR8 (D9S888). By homology searches of the sequence databases, we identified X104 as the human tight junction protein ZO-2 gene. We generated a large-scale physical map of the FRDA region by pulsed-field gel electrophoresis analysis of genomic DNA and of three YAC clones derived from different libraries, and we constructed an uninterrupted cosmid contig spanning the FRDA locus. The cAMP-dependent protein kinase {gamma}-catalytic subunit gene wasmore » identified within the critical FRDA interval, but it was excluded as candidate because of its biological properties and because of lack of mutations in FRDA patients. Six new polymorphic markers were isolated between FR2 (D9S886) and FR8 (D9S888), which were used for homozygosity analysis in a family in which parents of an affected child are distantly related. An ancient recombination involving the centromeric FRDA flanking markers had been previously demonstrated in this family. Homozygosity analysis indicated that the FRDA gene is localized in the telomeric 150 kb of the FR2-FR8 interval. 17 refs., 3 figs., 1 tab.« less

Flank wears Simulation by using back propagation neural network when cutting hardened H-13 steel in CNC End Milling

NASA Astrophysics Data System (ADS)

Hazza, Muataz Hazza F. Al; Adesta, Erry Y. T.; Riza, Muhammad

2013-12-01

High speed milling has many advantages such as higher removal rate and high productivity. However, higher cutting speed increase the flank wear rate and thus reducing the cutting tool life. Therefore estimating and predicting the flank wear length in early stages reduces the risk of unaccepted tooling cost. This research presents a neural network model for predicting and simulating the flank wear in the CNC end milling process. A set of sparse experimental data for finish end milling on AISI H13 at hardness of 48 HRC have been conducted to measure the flank wear length. Then the measured data have been used to train the developed neural network model. Artificial neural network (ANN) was applied to predict the flank wear length. The neural network contains twenty hidden layer with feed forward back propagation hierarchical. The neural network has been designed with MATLAB Neural Network Toolbox. The results show a high correlation between the predicted and the observed flank wear which indicates the validity of the models.

Variability of reflectance measurements with sensor altitude and canopy type

NASA Technical Reports Server (NTRS)

Daughtry, C. S. T.; Vanderbilt, V. C.; Pollara, V. J.

1981-01-01

Data were acquired on canopies of mature corn planted in 76 cm rows, mature soybeans planted in 96 cm rows with 71 percent soil cover, and mature soybeans planed in 76 cm rows with 100 percent soil cover. A LANDSAT band radiometer with a 15 degree field of view was used at ten altitudes ranging from 0.2 m to 10 m above the canopy. At each altitude, measurements were taken at 15 cm intervals also a 2.0 m transect perpendicular to the crop row direction. Reflectance data were plotted as a function of altitude and horizontal position to verify that the variance of measurements at low altitudes was attributable to row effects which disappear at higher altitudes where the sensor integrate across several rows. The coefficient of variation of reflectance decreased exponentially as the sensor was elevated. Systematic sampling (at odd multiples of 0.5 times the row spacing interval) required fewer measurements than simple random sampling over row crop canopies.

A Latest Glacial and Holocene Record From Medicine Lake, Siskiyou County, California: Preliminary Diatom, Pollen, and Sediment Data

NASA Astrophysics Data System (ADS)

Starratt, S. W.; Barron, J. A.; Kneeshaw, T.; Phillips, L.; Lowenstern, J.; Wanket, J. A.

2002-12-01

Medicine Lake is a small (165 ha), relatively shallow (average 7.3 m), medium- altitude (2,036 m) lake located within the summit caldera of Medicine Lake volcano, a dormant Quaternary shield volcano located in the southern Cascade Range. During September 1999 and 2000, high-resolution bathymetry, seismic-reflection profiles, and sediment cores were collected from the lake. Twenty six samples from core B100NC-1 (water depth 12.6 m; length 226 cm) were analyzed for physical properties, sediment grain size, diatoms, pollen, and total organic carbon (TOC). Using both 14C (AMS) dating and tephrochronology, the sediments at the bottom of the core are estimated to be 11,000 cal yr B.P., thus yielding an estimated average sedimentation rate of about 21 cm/1,000 yr. The lowermost part of the core (226 cm - ~200 cm) records the transition from glacial to interglacial conditions. During the period from about 11,000-7,200 cal yr B.P., lake level fluctuated between deeper oligotrophic conditions with a diatom flora dominated by Cyclotella spp. and shallower intervals with a diverse benthic flora. The relative low abundance (10-15%) of Abies (fir) pollen and relative high abundance (30-40%) of Artemesia (sagebrush) pollen in this interval suggest drier than present-day conditions. The lowest part of this interval (226 cm - 210 cm) is almost devoid of Cyclotella and may represent an ice-covered lake in which only a small benthic flora could exist around the margins of the lake where light penetration was the greatest. The sediments in this interval are relatively low in TOC and are dominated by glacial flour. From about 7,200 cal yr B.P. to the present, conditions have fluctuated between higher lake levels (three intervals) that are dominated by Cyclotella with a reduced number and diversity of benthic taxa, and lower lake levels (two intervals) during which the abundances of Cyclotella decrease to less than 10%. Relative values of Abies and Pinus (pine) pollen are higher during high lake levels, whereas pollen of aquatic taxa (primarily Isoetes [quillwort]) increases in significance at lower lake levels. Total organic carbon is higher during high stands and lower during low stands. Comparison with recently published multi-proxy studies of the Lake Tahoe-Truckee River-Pyramid Lake drainage system suggest that some of the changes in lake level observed at Medicine Lake between about 7,500-4,500 cal yr B.P. may be regional in nature, while fluctuations over the last 4,500 yr probably reflect conditions affecting only the local watershed.

Cluster Observations of reconnection along the dusk flank of the magnetosphere

NASA Astrophysics Data System (ADS)

Escoubet, C.-Philippe; Grison, Benjamin; Berchem, Jean; Trattner, Karlheinz; Lavraud, Benoit; Pitout, Frederic; Soucek, Jan; Richard, Robert; Laakso, Harri; Masson, Arnaud; Dunlop, Malcolm; Dandouras, Iannis; Reme, Henri; Fazakerley, Andrew; Daly, Patrick

2015-04-01

Magnetic reconnection is generally accepted to be the main process that transfers particles and energy from the solar wind to the magnetosphere. The location of the reconnection site depends on the orientation of the interplanetary magnetic field (IMF) in the solar wind: on the dayside magnetosphere for an IMF southward, on the lobes for an IMF northward and on the flanks for an IMF in the East-West direction. Since most of observations of reconnection events have sampled a limited region of space simultaneously it is still not yet know if the reconnection line is extended over large regions of the magnetosphere or if is patchy and made of many reconnection lines. We report a Cluster crossing on 5 January 2002 near the exterior cusp on the southern dusk side where we observe multiple sources of reconnection/injections. The IMF was mainly azimuthal (IMF-By around -5 nT), the solar wind speed lower than usual around 280 km/s with the density of order 5 cm-3. The four Cluster spacecraft had an elongated configuration near the magnetopause. C4 was the first spacecraft to enter the cusp around 19:52:04 UT, followed by C2 at 19:52:35 UT, C1 at 19:54:24 UT and C3 at 20:13:15 UT. C4 and C1 observed two ion energy dispersions at 20:10 UT and 20:40 UT and C3 at 20:35 UT and 21:15 UT. Using the time of flight technique on the upgoing and downgoing ions, which leads to energy dispersions, we obtain distances of the ion sources between 14 and 20 RE from the spacecraft. The slope of the ion energy dispersions confirmed these distances. Using Tsyganenko model, we find that these sources are located on the dusk flank, past the terminator. The first injection by C3 is seen at approximately the same time as the 2nd injection on C1 but their sources at the magnetopause were separated by more than 7 RE. This would imply that two distinct sources were active at the same time on the dusk flank of the magnetosphere. In addition, a flow reversal was observed at the magnetopause on C4 which would be an indication that reconnection is also taking place near the exterior cusp quasi-simultaneously.

Carbon dioxide and methane fluxes from the transitional zone of a Virginia ephemeral wetland

NASA Astrophysics Data System (ADS)

Atkins, J. W.; Epstein, H. E.; Welsch, D. L.

2014-12-01

The spatial and temporal controls mediating the switch between anaerobic and aerobic respiration within soils located in transitional zones adjacent to ephemeral wetlands remains unclear. As ephemeral wetlands dry down, a soil moisture gradient develops in adjacent transitional zones resulting in changes to the soil environment—moving from anoxic to oxic conditions. Under oxic conditions, aerobic decomposition and CO2 fluxes should dominate, while under anoxic conditions, anaerobic decomposition and CH4 emissions should be more prominent. To investigate the spatial controls and temporal dynamics of anaerobic and aerobic respiration we ran three 20 m transects starting from the late spring peak wetland edge (June 1, 2014 max. lake extent) of Lake Arnold, an ephemeral wetland located at Blandy Experimental Farm in Boyce, Virginia. At 10 m intervals along each transect, high-resolution soil moisture and temperature sensors were installed at three depth levels in the soil (5 cm, 20 cm, and 50 cm). Soil surface CO2 efflux was measured weekly at 5 m intervals using a portable, infra-red gas analyzer and surface chamber (EGM-4 and SRC-1; PP Systems; Amherst, MA). CH4 emissions were sampled weekly using a non-steady state chamber at 10 m intervals along each transect and analyzed in the lab using gas chromatography. Redox potential was measured weekly at two soil depths (5 cm and 20 cm) at 5 m intervals using platinum electrodes and a Ag/Cl reference electrode. Lake Arnold water levels decreased at a rate of 18.16 mm day-1 during the month of July. Preliminary results show a distinct drop in soil moisture at 5 and 20 cm depths at the 0 and 10 m distances along each transect. At 50 cm, soil moisture shows no distinct trend. Late July measurements of redox potential ranged from -196 mV to 865 mV and was correlated with soil moisture (R2 = 0.52). Rates of soil CO2 efflux were diminished at volumetric water contents (VWC) above 45% (ranging from 2.45 - 7.3 µmol CO2 m-2 sec-1). Below 45% VWC, soil CO2 efflux rates ranged from 4.5 - 9.6 µmol CO2 m-2 sec-1.

Dueling Volcanoes: How Activity Levels At Kilauea Influence Eruptions At Mauna Loa

NASA Astrophysics Data System (ADS)

Trusdell, F.

2011-12-01

The eruption of Kilauea at Pu`u `O`o is approaching its 29th anniversary. During this time, Mauna Loa has slowly inflated following its most recent eruption in 1984. This is Mauna Loa's longest inter-eruptive interval observed in HVO's 100 years of operation. When will the next eruption of Mauna Loa take place? Is the next eruption of Mauna Loa tied to the current activity at Kilauea? Historically, eruptive periods at Kilauea and Mauna Loa volcanoes appear to be inversely correlated. In the past, when Mauna Loa was exceptionally active, Kilauea Volcano was in repose, recovery, or in sustained lava lake activity. Swanson and co-workers (this meeting) have noted that explosive activity on Kilauea, albeit sporadic, was interspersed between episodes of effusive activity. Specifically, Swanson and co-workers note as explosive the time periods between 300 B.C.E.-1000 C.E and 1500-1800 C.E. They also point to evidence for low magma supply to Kilauea during these periods and few flank eruptions. During the former explosive period, Mauna Loa was exceedingly active, covering approximately 37% of its surface or 1882 km2, an area larger than Kilauea. This period is also marked by summit activity at Mauna Loa sustained for 300 years. In the 1500-1800 C.E. period, Mauna Loa was conspicuously active with 29 eruptions covering an area of 446 km2. In the late 19th and early 20th century, Kilauea was dominated by nearly continuous lava-lake activity. Meanwhile Mauna Loa was frequently active from 1843 C.E. to 1919 C.E., with 24 eruptions for an average repose time of 3.5 years. I propose that eruptive activity at one volcano may affect eruptions at the other, due to factors that impact magma supply, volcanic plumbing, and flank motion. This hypothesis is predicated on the notion that when the rift zones of Kilauea, and in turn its mobile south flank, are active, Mauna Loa's tendency to erupt is diminished. Kilauea's rift zones help drive the south flank seaward, in turn, as Mauna Loa inflates its flank is not buttressed on the southeast. Consequently, asymmetrical spreading occurs resulting in dilation of the shallow magma storage centers, which ultimately culminates in decreased magma pressure and therefore lessened ability to erupt. Whether or not this hypothesis is accurate, there is growing geologic evidence for inverse activity levels at both volcanoes. This hypothesis is readily testable and can have profound implications on how we monitor shield volcanoes, which impacts our ability to forecast eruptions, conduct hazard assessments, and risk analysis.

The Mechanism of Word Crowding

PubMed Central

Yu, Deyue; Akau, Melanie M. U.; Chung, Susana T. L.

2011-01-01

Word reading speed in peripheral vision is slower when words are in close proximity of other words (Chung, 2004). This word crowding effect could arise as a consequence of interaction of low-level letter features between words, or the interaction between high-level holistic representations of words. We evaluated these two hypotheses by examining how word crowding changes for five configurations of flanking words: the control condition — flanking words were oriented upright; scrambled — letters in each flanking word were scrambled in order; horizontal-flip — each flanking word was the left-right mirror-image of the original; letter-flip — each letter of the flanking word was the left-right mirror-image of the original; and vertical-flip — each flanking word was the up-down mirror-image of the original. The low-level letter feature interaction hypothesis predicts similar word crowding effect for all the different flanker configurations, while the high-level holistic representation hypothesis predicts less word crowding effect for all the alternative flanker conditions, compared with the control condition. We found that oral reading speed for words flanked above and below by other words, measured at 10° eccentricity in the nasal field, showed the same dependence on the vertical separation between the target and its flanking words, for the various flanker configurations. The result was also similar when we rotated the flanking words by 90° to disrupt the periodic vertical pattern, which presumably is the main structure in words. The remarkably similar word crowding effect irrespective of the flanker configurations suggests that word crowding arises as a consequence of interactions of low-level letter features. PMID:22079315

Construction of a high-density genetic map using specific length amplified fragment markers and identification of a quantitative trait locus for anthracnose resistance in walnut (Juglans regia L.).

PubMed

Zhu, Yufeng; Yin, Yanfei; Yang, Keqiang; Li, Jihong; Sang, Yalin; Huang, Long; Fan, Shu

2015-08-18

Walnut (Juglans regia, 2n = 32, approximately 606 Mb per 1C genome) is an economically important tree crop. Resistance to anthracnose, caused by Colletotrichum gloeosporioides, is a major objective of walnut genetic improvement in China. The recently developed specific length amplified fragment sequencing (SLAF-seq) is an efficient strategy that can obtain large numbers of markers with sufficient sequence information to construct high-density genetic maps and permits detection of quantitative trait loci (QTLs) for molecular breeding. SLAF-seq generated 161.64 M paired-end reads. 153,820 SLAF markers were obtained, of which 49,174 were polymorphic. 13,635 polymorphic markers were sorted into five segregation types and 2,577 markers of them were used to construct genetic linkage maps: 2,395 of these fell into 16 linkage groups (LGs) for the female map, 448 markers for the male map, and 2,577 markers for the integrated map. Taking into account the size of all LGs, the marker coverage was 2,664.36 cM for the female map, 1,305.58 cM for the male map, and 2,457.82 cM for the integrated map. The average intervals between two adjacent mapped markers were 1.11 cM, 2.91 cM and 0.95 cM for three maps, respectively. 'SNP_only' markers accounted for 89.25% of the markers on the integrated map. Mapping markers contained 5,043 single nucleotide polymorphisms (SNPs) loci, which corresponded to two SNP loci per SLAF marker. According to the integrated map, we used interval mapping (Logarithm of odds, LOD > 3.0) to detect our quantitative trait. One QTL was detected for anthracnose resistance. The interval of this QTL ranged from 165.51 cM to 176.33 cM on LG14, and ten markers in this interval that were above the threshold value were considered to be linked markers to the anthracnose resistance trait. The phenotypic variance explained by each marker ranged from 16.2 to 19.9%, and their LOD scores varied from 3.22 to 4.04. High-density genetic maps for walnut containing 16 LGs were constructed using the SLAF-seq method with an F1 population. One QTL for walnut anthracnose resistance was identified based on the map. The results will aid molecular marker-assisted breeding and walnut resistance genes identification.

West Flank Coso, CA FORGE 3D temperature model

DOE Data Explorer

Doug Blankenship

2016-03-01

x,y,z data of the 3D temperature model for the West Flank Coso FORGE site. Model grid spacing is 250m. The temperature model for the Coso geothermal field used over 100 geothermal production sized wells and intermediate-depth temperature holes. At the near surface of this model, two boundary temperatures were assumed: (1) areas with surface manifestations, including fumaroles along the northeast striking normal faults and northwest striking dextral faults with the hydrothermal field, a temperature of ~104˚C was applied to datum at +1066 meters above sea level elevation, and (2) a near-surface temperature at about 10 meters depth, of 20˚C was applied below the diurnal and annual conductive temperature perturbations. These assumptions were based on heat flow studies conducted at the CVF and for the Mojave Desert. On the edges of the hydrothermal system, a 73˚C/km (4˚F/100’) temperature gradient contour was established using conductive gradient data from shallow and intermediate-depth temperature holes. This contour was continued to all elevation datums between the 20˚C surface and -1520 meters below mean sea level. Because the West Flank is outside of the geothermal field footprint, during Phase 1, the three wells inside the FORGE site were incorporated into the preexisting temperature model. To ensure a complete model was built based on all the available data sets, measured bottom-hole temperature gradients in certain wells were downward extrapolated to the next deepest elevation datum (or a maximum of about 25% of the well depth where conductive gradients are evident in the lower portions of the wells). After assuring that the margins of the geothermal field were going to be adequately modelled, the data was contoured using the Kriging method algorithm. Although the extrapolated temperatures and boundary conditions are not rigorous, the calculated temperatures are anticipated to be within ~6˚C (20˚F), or one contour interval, of the observed data within the Coso geothermal field. Based on a lack of temperature data west of 74-2TCH, the edges of this model still seem to have an effect on West Flank modeled temperatures.

Paleomagnetic and rock magnetic study of IODP Site U1408 in the Northwest Atlantic - toward the high-resolution relative paleointensity estimate during the middle Eocene

NASA Astrophysics Data System (ADS)

Yamamoto, Y.; Yamazaki, T.; Oda, H.

2015-12-01

We have conducted paleomagnetic and rock magnetic measurements on the sedimentary sections recovered from Integrated Ocean Drilling Program (IODP) Site U1408 in the Northwest Atlantic, off Newfoundland. The measurements were done on u-channel samples using a pass-through superconducting rock magnetometer in a manner that remanent magnetizations (natural, anhysteretic and isothermal remanent magnetizations: NRM, ARM and IRM) were subjected to stepwise alternating field (AF) demagnetizations up to 80 mT and are measured with 1 cm spacing at each step.The characteristic remanent magnetization (ChRM) was resolved after AF demagnetization of 20-30 mT for most of the studied interval. As a result, we could identify several polarity reversals which were able to be correlated with the geomagnetic polarity time scale by Gradstein et al. (2012) (Geologic Time Scale 2012), with referring the shipboard biostratigraphy (Norris et al., 2014). The interval at ~ 33-157 mcd (meter composite depth) was interpreted to cover the Chrons C18n.1n to C20n with missing Chron C19n because of the somewhat ambiguous magnetic signals at the interval at ~ 70-110 mcd. The correlation provided an age model inferring sedimentation rate of about 2-4 cm/kyr during these chrons.There is the interval that shows relatively constant ARM and IRM intensities as well as ratios of ARM to IRM (ARM/IRM): the interval at ~ 37-90 mcd resulted in ARM intensity of 0.2-0.4 A/m, IRM intensity of 1-2 A/m and ARM/IRM of 0.17-0.20. This interval corresponds to the Chron C18 and the estimated sedimentation rate of the interval is ~ 2 cm/kyr. It is expected that high-resolution relative paleointensity estimate during the middle Eocene is potentially possible. We will report a preliminary estimate.

Optimal debulking targets in women with advanced stage ovarian cancer: a retrospective study of immediate versus interval debulking surgery.

PubMed

Altman, Alon D; Nelson, Gregg; Chu, Pamela; Nation, Jill; Ghatage, Prafull

2012-06-01

The objective of this study was to examine both overall and disease-free survival of patients with advanced stage ovarian cancer after immediate or interval debulking surgery based on residual disease. We performed a retrospective chart review at the Tom Baker Cancer Centre in Calgary, Alberta of patients with pathologically confirmed stage III or IV ovarian cancer, fallopian tube cancer, or primary peritoneal cancer between 2003 and 2007. We collected data on the dates of diagnosis, recurrence, and death; cancer stage and grade, patients' age, surgery performed, and residual disease. One hundred ninety-two patients were included in the final analysis. The optimal debulking rate with immediate surgery was 64.8%, and with interval surgery it was 85.9%. There were improved overall and disease-free survival rates for optimally debulked disease (< 1 cm) with both immediate and interval surgery (P < 0.001) compared to suboptimally debulked disease. Overall survival rates for optimally debulked disease were not significantly different in patients having immediate and interval surgery (P = 0.25). In the immediate surgery group, patients with microscopic residual disease had better disease-free survival (P = 0.015) and overall survival (P = 0.005) than patients with < 1 cm residual disease. In patients who had interval surgery, those who had microscopic residual disease had more improved disease-free survival than those with < 1 cm disease (P = 0.05), but they did not have more improved overall survival (P = 0.42). Patients with microscopic residual disease who had immediate surgery had a significantly better overall survival rate than those who had interval surgery (P = 0.034). In women with advanced stage ovarian cancer, the goal of surgery should be resection of disease to microscopic residual at the initial procedure. This results in improved overall survival than lesser degrees of resection. Further studies are required to determine optimal surgical management.

Prolonged intervals during Mycobacterium tuberculosis subunit vaccine boosting contributes to eliciting immunity mediated by central memory-like T cells.

PubMed

Bai, Chunxiang; He, Juanjuan; Niu, Hongxia; Hu, Lina; Luo, Yanping; Liu, Xun; Peng, Liang; Zhu, Bingdong

2018-05-01

It is believed that central memory T cells (T CM ) provide long-term protection against tuberculosis (TB). However, the effects of TB subunit vaccine immunization schedule, especially the vaccination intervals, on T cell immune memory is still unclear. In this study, mice were immunized with fusion protein ESAT6-Ag85B-MPT64 (190-198)-Mtb8.4-Rv2626c (LT70) based subunit vaccine three times according to the following schedules: ① 0, 3rd and 6th week respectively (0-3-6w), ② 0, 4th and 12th week (0-4-12w), and ③ 0, 4th and 24th week (0-4-24w). We found that both schedules of 0-4-12w and 0-4-24w induced higher level of antigen specific IL-2, IFN-γ and TNF-α than 0-3-6w immunization. Among them, 0-4-12w induced the highest level of IL-2, which is a key cytokine mainly produced by T CM . Moreover, by cultured IFN-γ ELISPOT and cell proliferation assay etc., we found that the vaccination schedule of 0-4-12w elicited higher numbers of T CM like cells, stronger T CM - mediated immune responses and higher protective efficacy against M. bovis BCG challenge than 0-3-6w did. It suggests that prolonging the vaccination interval of TB subunit vaccine to some extent contributes to inducing more abundant T CM like cells and providing stronger immune protection against mycobacteria infection. Copyright © 2018. Published by Elsevier Ltd.

Aging and the visual perception of exocentric distance.

PubMed

Norman, J Farley; Adkins, Olivia C; Norman, Hideko F; Cox, Andrea G; Rogers, Connor E

2015-04-01

The ability of 18 younger and older adults to visually perceive exocentric distances was evaluated. The observers judged the extent of fronto-parallel and in-depth spatial intervals at a variety of viewing distances from 50cm to 164.3cm. Most of the observers perceived in-depth intervals to be significantly smaller than fronto-parallel intervals, a finding that is consistent with previous studies. While none of the individual observers' judgments of exocentric distance were accurate, the judgments of the older observers were significantly more accurate than those of the younger observers. The precision of the observers' judgments across repeated trials, however, was not affected by age. The results demonstrate that increases in age can produce significant improvements in the visual ability to perceive the magnitude of exocentric distances. Copyright © 2015 Elsevier Ltd. All rights reserved.

Molecular mapping and candidate gene analysis for resistance to powdery mildew in Cucumis sativus stem.

PubMed

Liu, P N; Miao, H; Lu, H W; Cui, J Y; Tian, G L; Wehner, T C; Gu, X F; Zhang, S P

2017-08-31

Powdery mildew (PM) of cucumber (Cucumis sativus), caused by Podosphaera xanthii, is a major foliar disease worldwide and resistance is one of the main objectives in cucumber breeding programs. The resistance to PM in cucumber stem is important to the resistance for the whole plant. In this study, genetic analysis and gene mapping were implemented with cucumber inbred lines NCG-122 (with resistance to PM in the stem) and NCG-121 (with susceptibility in the stem). Genetic analysis showed that resistance to PM in the stem of NCG-122 was qualitative and controlled by a single-recessive nuclear gene (pm-s). Susceptibility was dominant to resistance. In the initial genetic mapping of the pm-s gene, 10 SSR markers were discovered to be linked to pm-s, which was mapped to chromosome 5 (Chr.5) of cucumber. The pm-s gene's closest flanking markers were SSR20486 and SSR06184/SSR13237 with genetic distances of 0.9 and 1.8 cM, respectively. One hundred and fifty-seven pairs of new SSR primers were exploited by the sequence information in the initial mapping region of pm-s. The analysis on the F 2 mapping population using the new molecular markers showed that 17 SSR markers were confirmed to be linked to the pm-s gene. The two closest flanking markers, pmSSR27and pmSSR17, were 0.1 and 0.7 cM from pm-s, respectively, confirming the location of this gene on Chr.5. The physical length of the genomic region containing pm-s was 135.7 kb harboring 21 predicted genes. Among these genes, the gene Csa5G623470 annotated as encoding Mlo-related protein was defined as the most probable candidate gene for the pm-s. The results of this study will provide a basis for marker-assisted selection, and make the benefit for the cloning of the resistance gene.

A second generation genetic linkage map of Japanese flounder (Paralichthys olivaceus)

PubMed Central

2010-01-01

Background Japanese flounder (Paralichthys olivaceus) is one of the most economically important marine species in Northeast Asia. Information on genetic markers associated with quantitative trait loci (QTL) can be used in breeding programs to identify and select individuals carrying desired traits. Commercial production of Japanese flounder could be increased by developing disease-resistant fish and improving commercially important traits. Previous maps have been constructed with AFLP markers and a limited number of microsatellite markers. In this study, improved genetic linkage maps are presented. In contrast with previous studies, these maps were built mainly with a large number of codominant markers so they can potentially be used to analyze different families and populations. Results Sex-specific genetic linkage maps were constructed for the Japanese flounder including a total of 1,375 markers [1,268 microsatellites, 105 single nucleotide polymorphisms (SNPs) and two genes]; 1,167 markers are linked to the male map and 1,067 markers are linked to the female map. The lengths of the male and female maps are 1,147.7 cM and 833.8 cM, respectively. Based on estimations of map lengths, the female and male maps covered 79 and 82% of the genome, respectively. Recombination ratio in the new maps revealed F:M of 1:0.7. All linkage groups in the maps presented large differences in the location of sex-specific recombination hot-spots. Conclusions The improved genetic linkage maps are very useful for QTL analyses and marker-assisted selection (MAS) breeding programs for economically important traits in Japanese flounder. In addition, SNP flanking sequences were blasted against Tetraodon nigroviridis (puffer fish) and Danio rerio (zebrafish), and synteny analysis has been carried out. The ability to detect synteny among species or genera based on homology analysis of SNP flanking sequences may provide opportunities to complement initial QTL experiments with candidate gene approaches from homologous chromosomal locations identified in related model organisms. PMID:20937088

Intermediate outcomes of rheumatic mitral stenosis post-balloon mitral valvotomy.

PubMed

Sharma, Jugal; Goel, Pravin K; Pandey, Chandra Mani; Awasthi, Ashish; Kapoor, Aditya; Tewari, Satyendra; Garg, Naveen; Kumar, Sudeep; Khanna, Roopali

2015-10-01

Balloon mitral valvotomy is a standard therapeutic modality for managing rheumatic mitral stenosis. Data on intermediate outcomes of this procedure are limited. Thus we investigated the intermediate outcome after balloon mitral valvotomy performed at a large tertiary center in India. Case records and follow-up data of 2330 patients who underwent valvotomy from June 1999 to December 2005 were retrieved from the hospital information system and analyzed. The median age of the patients was 32 ± 11 years, 1363 were female including 36 who were pregnant, and 379 were in atrial fibrillation. Follow-up ranged from 1 to 14 years (mean 4.5 years, median 4.0 years). The procedural success rate was 93%. Atrial fibrillation, higher functional class, and worse valve morphology were independent predictors of a poor procedural outcome. Patients with sinus rhythm had better event-free survival (10.43 years, 95% confidence interval: 10.1-10.7) compared to those with atrial fibrillation (8.17 years, 95% confidence interval: 7.5-8.8). Patients who achieved a valve area >1.75 cm(2) had a better event-free survival (11.7 years, 95% confidence interval: 11.4-12.0) than those with a valve area of 1.5-1.74 cm(2) (9.3 years, 95% confidence interval: 9.0-9.7). On multivariate analysis, higher functional class, worse valve morphology, and new significant mitral regurgitation were predictors of a poor outcome. Achieved mitral valve area >1.75 cm(2) was an independent predictor of a good outcome. Patients with sinus rhythm, less gross valve deformity, and a post-balloon mitral valvotomy area >1.75 cm(2) had better intermediate outcomes. © The Author(s) 2015.

Recent Inflation of Kilauea Volcano During the Ongoing Eruption - Harbinger of Change?

NASA Astrophysics Data System (ADS)

Miklius, A.

2005-12-01

Since the start of the Pu`u `O`o-Kupaianaha eruption on Kilauea's east rift zone in 1983, the volcano's summit has subsided over 1.5 m. Over the last two years, however, leveling and GPS networks have recorded substantial inflation of the summit magma system. Since late 2003, the summit has extended almost 20 cm and risen about 5 cm. Leveling surveys suggest that the locus of inflation has been variable, with maximum uplift shifting from an area in the caldera near Halemaumau to an area in the southeastern part of the caldera, near Keanakako`i crater. Inflation rates have also been highly variable. Starting in mid-January 2005, the inflation rate accelerated for approximately a month, with extension rates across the summit reaching over 60 cm/yr. During this accelerated inflation, on January 25, a brief inflation-deflation transient was recorded on the tiltmeter network, accompanied by volcanic tremor. This event was followed by rapid slip of Kilauea's south flank, raising intriguing possibilities about the relationship between the magmatic system and the rapid slip events. Tiltmeters at the eruption site also recorded inflation, but only until early February, when a deflationary trend began, accompanied by increased eruptive output. The summit continued to inflate until late February, deflated slightly, then resumed inflation in April. These observations suggest that the high inflation rate in January-February was a result of increased magma supply to the summit magma system. In contrast, the most recent previous episode of inflation in 2002 was related to decreased outflow at the eruption site, effectively backing up pressure in the system. That inflation episode ended with the opening of new vents on the flank of Pu`u `O`o that produced high volumes of lava. The two previous, prolonged periods of uplift at the summit were in 1985-1986, before the eruption moved downrift from Pu`u `O`o to Kupaianaha, and 1990-1992, when eruptive activity shifted back to Pu`u `O`o. The current inflation of Kilauea is likely a combination of decreased efficiency of the transport system from the summit to the eruption site and an increase in magma supply. Past behavior of the volcano suggests that such conditions favor a shift in the location of the eruptive vent.

Role of large flank-collapse events on magma evolution of volcanoes. Insights from the Lesser Antilles Arc

NASA Astrophysics Data System (ADS)

Boudon, Georges; Villemant, Benoît; Friant, Anne Le; Paterne, Martine; Cortijo, Elsa

2013-08-01

Flank-collapse events are now recognized as common processes of destruction of volcanoes. They may occur several times on a volcanic edifice pulling out varying volumes of material from km3 to thousands of km3. In the Lesser Antilles Arc, a large number of flank-collapse events were identified. Here, we show that some of the largest events are correlated to significant variations in erupted magma compositions and eruptive styles. On Montagne Pelée (Martinique), magma production rate has been sustained during several thousand years following a 32 ka old flank-collapse event. Basic and dense magmas were emitted through open-vent eruptions that generated abundant scoria flows while significantly more acidic magmas were produced before the flank collapse. The rapid building of a new cone increased the load on magma bodies at depth and the density threshold. Magma production rate decreased and composition of the erupted products changed to more acidic compared to the preceding period of activity. These low density magma generated plinian and dome-forming eruptions up to the Present. In contrast at Soufrière Volcanic Centre of St. Lucia and at Pitons du Carbet in Martinique, the flank-collapses have an opposite effect: in both cases, the acidic magmas erupted immediately after the flank-collapses. These magmas are highly porphyritic (up to 60% phenocrysts) and much more viscous than the magmas erupted before the flank-collapses. They have been generally emplaced as voluminous and uptight lava domes (called “the Pitons”). Such magmas could not ascent without a significant decrease of the threshold effect produced by the volcanic edifice loading before the flank-collapse.

The mechanism of word crowding.

PubMed

Yu, Deyue; Akau, Melanie M U; Chung, Susana T L

2012-01-01

Word reading speed in peripheral vision is slower when words are in close proximity of other words (Chung, 2004). This word crowding effect could arise as a consequence of interaction of low-level letter features between words, or the interaction between high-level holistic representations of words. We evaluated these two hypotheses by examining how word crowding changes for five configurations of flanking words: the control condition - flanking words were oriented upright; scrambled - letters in each flanking word were scrambled in order; horizontal-flip - each flanking word was the left-right mirror-image of the original; letter-flip - each letter of the flanking word was the left-right mirror-image of the original; and vertical-flip - each flanking word was the up-down mirror-image of the original. The low-level letter feature interaction hypothesis predicts similar word crowding effect for all the different flanker configurations, while the high-level holistic representation hypothesis predicts less word crowding effect for all the alternative flanker conditions, compared with the control condition. We found that oral reading speed for words flanked above and below by other words, measured at 10° eccentricity in the nasal field, showed the same dependence on the vertical separation between the target and its flanking words, for the various flanker configurations. The result was also similar when we rotated the flanking words by 90° to disrupt the periodic vertical pattern, which presumably is the main structure in words. The remarkably similar word crowding effect irrespective of the flanker configurations suggests that word crowding arises as a consequence of interactions of low-level letter features. Copyright © 2011 Elsevier Ltd. All rights reserved.

Relaxation of the south flank after the 7.2-magnitude Kalapana earthquake, Kilauea Volcano, Hawaii

USGS Publications Warehouse

Dvorak, John J.; Klein, Fred W.; Swanson, Donald A.

1994-01-01

An M = 7.2 earthquake on 29 November 1975 caused the south flank of Kilauea Volcano, Hawaii, to move seaward several meters: a catastrophic release of compression of the south flank caused by earlier injections of magma into the adjacent segment of a rift zone. The focal mechanisms of the mainshock, the largest foreshock, and the largest aftershock suggest seaward movement of the upper block. The rate of aftershocks decreased in a familiar hyperbolic decay, reaching the pre-1975 rate of seismicity by the mid-1980s. Repeated rift-zone intrusions and eruptions after 1975, which occurred within 25 km of the summit area, compressed the adjacent portion of the south flank, apparently masking continued seaward displacement of the south flank. This is evident along a trilateration line that continued to extend, suggesting seaward displacement, immediately after the M = 7.2 earthquake, but then was compressed during a series of intrusions and eruptions that began in September 1977. Farther to the east, trilateration measurements show that the portion of the south flank above the aftershock zone, but beyond the area of compression caused by the rift-zone intrusions and eruptions, continued to move seaward at a decreasing rate until the mid-1980s, mimicking the decay in aftershock rate. Along the same portion of the south flank, the pattern of vertical surface displacements can be explained by continued seaward movement of the south flank and development of two eruptive fissures along the east rift zone, each of which extended from a depth of ∼3 km to the surface. The aftershock rate and continued seaward movement of the south flank are reminiscent of crustal response to other large earthquakes, such as the 1966 M = 6 Parkfield earthquake and the 1983 M = 6.5 Coalinga earthquake.

Chromosomal Location and Comparative Genomics Analysis of Powdery Mildew Resistance Gene Pm51 in a Putative Wheat-Thinopyrum ponticum Introgression Line

PubMed Central

Zhang, Xiaojun; Li, Xin; Guo, Huijuan; Gong, Wenping; Jia, Juqing; Qiao, Linyi; Ren, Yongkang; Yang, Zujun; Chang, Zhijian

2014-01-01

Powdery mildew (PM) is a very destructive disease of wheat (Triticum aestivum L.). Wheat-Thinopyrum ponticum introgression line CH7086 was shown to possess powdery mildew resistance possibly originating from Th. ponticum. Genomic in situ hybridization and molecular characterization of the alien introgression failed to identify alien chromatin. To study the genetics of resistance, CH7086 was crossed with susceptible genotypes. Segregation in F2 populations and F2:3 lines tested with Chinese Bgt race E09 under controlled conditions indicated that CH7086 carries a single dominant gene for powdery mildew resistance. Fourteen SSR and EST-PCR markers linked with the locus were identified. The genetic distances between the locus and the two flanking markers were 1.5 and 3.2 cM, respectively. Based on the locations of the markers by nullisomic-tetrasomic and deletion lines of ‘Chinese Spring’, the resistance gene was located in deletion bin 2BL-0.89-1.00. Conserved orthologous marker analysis indicated that the genomic region flanking the resistance gene has a high level of collinearity to that of rice chromosome 4 and Brachypodium chromosome 5. Both resistance specificities and tests of allelism suggested the resistance gene in CH7086 was different from previously reported powdery mildew resistance genes on 2BL, and the gene was provisionally designated PmCH86. Molecular analysis of PmCH86 compared with other genes for resistance to Bgt in the 2BL-0.89-1.00 region suggested that PmCH86 may be a new PM resistance gene, and it was therefore designated as Pm51. The closely linked flanking markers could be useful in exploiting this putative wheat-Thinopyrum translocation line for rapid transfer of Pm51 to wheat breeding programs. PMID:25415194

Molecular Mapping of Stripe Rust Resistance Gene Yr76 in Winter Club Wheat Cultivar Tyee.

PubMed

Xiang, C; Feng, J Y; Wang, M N; Chen, X M; See, D R; Wan, A M; Wang, T

2016-10-01

Tyee, one of the wheat cultivars used to differentiate races of Puccinia striiformis f. sp. tritici in the United States, was identified to have a single gene for all-stage resistance, tentatively named YrTye. To map the gene, Tyee was crossed with 'Avocet Susceptible' (AvS). Genetic analysis of the F 1 , F 2 , F 2:3 , and BC 1 progenies confirmed a single dominant gene for resistance to race PSTv-37 that is avirulent to YrTye. A mapping population of 135 F 2 plants was phenotyped with PSTv-37 and the derived F 2:3 lines were tested with races PSTv-37, PSTv-40, and PSTv-79. The F 2 mapping population was genotyped with simple sequence repeat (SSR) markers. A genetic map comprising 13 SSR markers located YrTye in chromosome 3AS flanked distally by SSR marker wmc11 and proximally by wmc532 at 2.6 and 3.4 cM, respectively. Amplification of Chinese Spring 3A deletion lines placed the gene in the distal bin 3AS4-0.45 to 1.00. Because YrTye is different from all formally named Yr genes in chromosomal location, we permanently name the gene Yr76. A near-isogenic line of spring common wheat was developed and selected by testing F 3 lines derived from a AvS*4/Tyee cross with Tyee-avirulent and virulent races and the flanking markers. The specific SSR alleles flanking Yr76 were validated using cultivars and breeding lines with and without the gene, and showed high polymorphisms. The specificity of Yr76 is useful in differentiating P. striiformis f. sp. tritici races, and its tightly linked markers will be useful in developing resistant cultivars when combining the gene with other genes for resistance to stripe rust.

Three-dimensional displacements of a large volcano flank movement during the May 2010 eruptions at Pacaya Volcano, Guatemala

NASA Astrophysics Data System (ADS)

Schaefer, L. N.; Wang, T.; Escobar-Wolf, R.; Oommen, T.; Lu, Z.; Kim, J.; Lundgren, P. R.; Waite, G. P.

2017-01-01

Although massive flank failure is fairly common in the evolution of volcanoes, measurements of flank movement indicative of instability are rare. Here 3-D displacements from airborne radar amplitude images derived using an amplitude image pixel offset tracking technique show that the west and southwest flanks of Pacaya Volcano in Guatemala experienced large ( 4 m), discrete landsliding that was ultimately aborted. Pixel offset tracking improved measurement recovery by nearly 50% over classic interferometric synthetic aperture radar techniques, providing unique measurements at the event. The 3-D displacement field shows that the flank moved coherently downslope along a complex failure surface involving both rotational and along-slope movement. Notably, the lack of continuous movement of the slide in the years leading up to the event emphasizes that active movement should not always be expected at volcanoes for which triggering factors (e.g., magmatic intrusions and eruptions) could precipitate sudden major flank instability.

Comparative genome-wide mapping versus extreme pool-genotyping and development of diagnostic SNP markers linked to QTL for adult plant resistance to stripe rust in common wheat.

PubMed

Wu, Jianhui; Huang, Shuo; Zeng, Qingdong; Liu, Shengjie; Wang, Qilin; Mu, Jingmei; Yu, Shizhou; Han, Dejun; Kang, Zhensheng

2018-06-16

A major stripe rust resistance QTL on chromosome 4BL was localized to a 4.5-Mb interval using comparative QTL mapping methods and validated in 276 wheat genotypes by haplotype analysis. CYMMIT-derived wheat line P10103 was previously identified to have adult plant resistance (APR) to stripe rust in the greenhouse and field. The conventional approach for QTL mapping in common wheat is laborious. Here, we performed QTL detection of APR using a combination of genome-wide scanning and extreme pool-genotyping. SNP-based genetic maps were constructed using the Wheat55 K SNP array to genotype a recombinant inbred line (RIL) population derived from the cross Mingxian 169 × P10103. Five stable QTL were detected across multiple environments. A fter comparing SNP profiles from contrasting, extreme DNA pools of RILs six putative QTL were located to approximate chromosome positions. A major QTL on chromosome 4B was identified in F 2:4 contrasting pools from cross Zhengmai 9023 × P10103. A consensus QTL (LOD = 26-40, PVE = 42-55%), named QYr.nwafu-4BL, was defined and localized to a 4.5-Mb interval flanked by SNP markers AX-110963704 and AX-110519862 in chromosome arm 4BL. Based on stripe rust response, marker genotypes, pedigree analysis and mapping data, QYr.nwafu-4BL is likely to be a new APR QTL. The applicability of the SNP-based markers flanking QYr.nwafu-4BL was validated on a diversity panel of 276 wheat lines. The additional minor QTL on chromosomes 4A, 5A, 5B and 6A enhanced the level of resistance conferred by QYr.nwafu-4BL. Marker-assisted pyramiding of QYr.nwafu-4BL and other favorable minor QTL in new wheat cultivars should improve the level of APR to stripe rust.

A novel allele of TaGW2-A1 is located in a finely mapped QTL that increases grain weight but decreases grain number in wheat (Triticum aestivum L.).

PubMed

Zhai, Huijie; Feng, Zhiyu; Du, Xiaofen; Song, Yane; Liu, Xinye; Qi, Zhongqi; Song, Long; Li, Jiang; Li, Linghong; Peng, Huiru; Hu, Zhaorong; Yao, Yingyin; Xin, Mingming; Xiao, Shihe; Sun, Qixin; Ni, Zhongfu

2018-03-01

A novel TaGW2-A1 allele was identified from a stable, robust QTL region, which is pleiotropic for thousand grain weight, grain number per spike, and grain morphometric parameters in wheat. Thousand grain weight (TGW) and grain number per spike (GNS) are two crucial determinants of wheat spike yield, and genetic dissection of their relationships can help to fine-tune these two components and maximize grain yield. By evaluating 191 recombinant inbred lines in 11 field trials, we identified five genomic regions on chromosomes 1B, 3A, 3B, 5B, or 7A that solely influenced either TGW or GNS, and a further region on chromosome 6A that concurrently affected TGW and GNS. The QTL of interest on chromosome 6A, which was flanked by wsnp_BE490604A_Ta_2_1 and wsnp_RFL_Contig1340_448996 and designated as QTgw/Gns.cau-6A, was finely mapped to a genetic interval shorter than 0.538 cM using near isogenic lines (NILs). The elite NILs of QTgw/Gns.cau-6A increased TGW by 8.33%, but decreased GNS by 3.05% in six field trials. Grain Weight 2 (TaGW2-A1), a well-characterized gene that negatively regulates TGW and grain width in wheat, was located within the finely mapped interval of QTgw/Gns.cau-6A. A novel and rare TaGW2-A1 allele with a 114-bp deletion in the 5' flanking region was identified in the parent with higher TGW, and it reduced TaGW2-A1 promoter activity and expression. In conclusion, these results expand our knowledge of the genetic and molecular basis of TGW-GNS trade-offs in wheat. The QTLs and the novel TaGW2-A1 allele are likely useful for the development of cultivars with higher TGW and/or higher GNS.

Mechanical response of the south flank of kilauea volcano, hawaii, to intrusive events along the rift systems

USGS Publications Warehouse

Dvorak, J.J.; Okamura, A.T.; English, T.T.; Koyanagi, R.Y.; Nakata, J.S.; Sako, M.K.; Tanigawa, W.T.; Yamashita, K.M.

1986-01-01

Increased earthquake activity and compression of the south flank of Kilauea volcano, Hawaii, have been recognized by previous investigators to accompany rift intrusions. We further detail the temporal and spatial changes in earthquake rates and ground strain along the south flank induced by six major rift intrusions which occurred between December 1971 and January 1981. The seismic response of the south flank to individual rift intrusions is immediate; the increased rate of earthquake activity lasts from 1 to 4 weeks. Horizontal strain measurements indicate that compression of the south flank usually accompanies rift intrusions and eruptions. Emplacement of an intrusion at a depth greater than about 4 km, such as the June 1982 southwest rift intrusion, however, results in a slight extension of the subaerial portion of the south flank. Horizontal strain measurements along the south flank are used to locate the January 1983 east-rift intrusion, which resulted in eruptive activity. The intrusion is modeled as a vertical rectangular sheet with constant displacement perpendicular to the plane of the sheet. This model suggests that the intrusive body that compressed the south flank in January 1983 extended from the surface to about 2.4 km depth, and was aligned along a strike of N66??E. The intrusion is approximately 11 km in length, extended beyond the January 1983 eruptive fissures, which are 8 km in length and is contained within the 14-km-long region of shallow rift earthquakes. ?? 1986.

Morphotectonic evolution of the central Kenya rift flanks: Implications for late Cenozoic environmental change in East Africa

NASA Astrophysics Data System (ADS)

Spiegel, Cornelia; Kohn, Barry P.; Belton, David X.; Gleadow, Andrew J. W.

2007-05-01

The Kenya rift valley is the classic example of an active continental rift zone. We report the rift flank cooling history based on a combination of previous apatite fission track (AFT) and new (U-Th)/He (AHe) data. Our results corroborate the Late Cretaceous rapid cooling episode of continent-wide significance revealed previously by AFT dating. Post-Cretaceous cooling of the eastern rift flank was slow with net cooling of <20 °C through much of the Cenozoic. We interpret this cooling style in terms of the absence of significant relief. Samples from the western rift flank and from low elevations of the eastern rift flank reveal a late Neogene cooling episode associated with net cooling of ˜38 °C, indicating that this flank was eroded to a deeper level than that to the east. The late Neogene cooling episode is interpreted as the time of uplift and shaping of the present-day relief of the graben shoulders, which attain elevations of >3400 m in central Kenya. This timing also largely coincides with the uplift of the Western Rift flanks in Uganda and Congo and with the change toward drier conditions and grassland-dominated vegetation in East Africa. We propose that the regional morphotectonic evolution of the Kenyan rift flanks contributed to late Cenozoic environmental change in East Africa, thus superimposing a pronounced local effect on global climate change at that time.

Homozygosity and linkage-disequilibrium mapping of the syndrome of congenital hypoparathyroidism, growth and mental retardation, and dysmorphism to a 1-cM interval on chromosome 1q42-43.

PubMed

Parvari, R; Hershkovitz, E; Kanis, A; Gorodischer, R; Shalitin, S; Sheffield, V C; Carmi, R

1998-07-01

The syndrome of hypoparathyroidism associated with growth retardation, developmental delay, and dysmorphism (HRD) is a newly described, autosomal recessive, congenital disorder with severe, often fatal consequences. Since the syndrome is very rare, with all parents of affected individuals being consanguineous, it is presumed to be caused by homozygous inheritance of a single recessive mutation from a common ancestor. To localize the HRD gene, we performed a genomewide screen using DNA pooling and homozygosity mapping for apparently unlinked kindreds. Analysis of a panel of 359 highly polymorphic markers revealed linkage to D1S235. The maximum LOD score obtained was 4.11 at a recombination fraction of 0. Analysis of three additional markers-GGAA6F06, D1S2678, and D1S179-in a 2-cM interval around D1S235 resulted in LOD scores >3. Analysis of additional chromosome 1 markers revealed evidence of genetic linkage disequilibrium and place the HRD locus within an approximately 1-cM interval defined by D1S1540 and D1S2678 on chromosome 1q42-43.

Homozygosity and linkage-disequilibrium mapping of the syndrome of congenital hypoparathyroidism, growth and mental retardation, and dysmorphism to a 1-cM interval on chromosome 1q42-43.

PubMed Central

Parvari, R; Hershkovitz, E; Kanis, A; Gorodischer, R; Shalitin, S; Sheffield, V C; Carmi, R

1998-01-01

The syndrome of hypoparathyroidism associated with growth retardation, developmental delay, and dysmorphism (HRD) is a newly described, autosomal recessive, congenital disorder with severe, often fatal consequences. Since the syndrome is very rare, with all parents of affected individuals being consanguineous, it is presumed to be caused by homozygous inheritance of a single recessive mutation from a common ancestor. To localize the HRD gene, we performed a genomewide screen using DNA pooling and homozygosity mapping for apparently unlinked kindreds. Analysis of a panel of 359 highly polymorphic markers revealed linkage to D1S235. The maximum LOD score obtained was 4.11 at a recombination fraction of 0. Analysis of three additional markers-GGAA6F06, D1S2678, and D1S179-in a 2-cM interval around D1S235 resulted in LOD scores >3. Analysis of additional chromosome 1 markers revealed evidence of genetic linkage disequilibrium and place the HRD locus within an approximately 1-cM interval defined by D1S1540 and D1S2678 on chromosome 1q42-43. PMID:9634513

FFT-local gravimetric geoid computation

NASA Technical Reports Server (NTRS)

Nagy, Dezso; Fury, Rudolf J.

1989-01-01

Model computations show that changes of sampling interval introduce only 0.3 cm changes, whereas zero padding provides an improvement of more than 5 cm in the fast Fourier transformation (FFT) generated geoid. For the Global Positioning System (GPS) survey of Franklin County, Ohio, the parameters selected as a result of model computations, allow large reduction in local data requirements while still retaining the cm accuracy when tapering and padding is applied. The results are shown in tables.

Modelling of deformation around magmatic intrusions with application to gold-related structures in the Yilgarn Craton, Western Australia

NASA Astrophysics Data System (ADS)

Zhang, Y.; Karrech, A.; Schaubs, P. M.; Regenauer-Lieb, K.; Poulet, T.; Cleverley, J. S.

2012-03-01

This study simulates rock deformation around high temperature granite intrusions and explores how gold bearing shear zones near intrusions were developed in the Yilgarn, using a new continuum damage mechanics algorithm that considers the temperature and time dependent elastic-visco-plastic constitutive behaviour of crustal materials. The results demonstrate that strain rates have the most significant effects on structural patterns for both extensional and compressional cases. Smaller strain rates promote the formation of narrow high-strain shear zones and strong strain localisation along the flank or shoulder areas of the intrusion and cold granite dome. Wider diffuse shear zones are developed under higher strain rates due to strain hardening. The cooling of the intrusion to background temperatures occurred over a much shorter time interval when compared to the duration of deformation and shear zones development. Strong strain localisation near the intrusion and shear zone development in the crust occurred under both extensional and compressional conditions. There is always clear strain localisation around the shoulders of the intrusion and the flanks of the "cold" granitic dome in early deformation stages. In the models containing a pre-existing fault, strain localisation near the intrusion became asymmetric with much stronger localisation and the development of a damage zone at the shoulder adjacent to the reactivated fault. At higher deformation stages, the models produced a range of structural patterns including graben and half graben basin (extension), "pop-up" wedge structures (compression), tilted fault blocks and switch of shear movement from reverse to normal on shear zones. The model explains in part why a number of gold deposits (e.g. Wallaby and Paddington deposits) in the Yilgarn were formed near the flank of granite-cored domes and deep "tapping" faults, and shows that the new modelling approach is capable of realistically simulating high strain localisation and shear zone development.

Lateral masking in cycling displays: the relative importance of separation, flanker duration, and interstimulus interval for object-mediated updating.

PubMed

Hein, Elisabeth; Moore, Cathleen M

2010-01-01

A central bar repeatedly presented in alternation with two flanking bars can lead to the disappearance of the central bar. Recently it has been suggested that this masking effect could be explained by object-mediated updating: the information from the central bar is integrated into the representation of the flankers, leading not only to the disappearance of the central bar as a separate object, but also to the perception of the flankers in apparent motion between their real position and the position of the central bar. This account suggests that the visibility of the central bar should depend on the same factors as those that influence the construction and maintenance of object representations. Therefore separation between central bar and flankers should not influence visibility as long as the time interval between them is adequate to make an interpretation of the scene in terms of one object moving from one location to the other possible location. We found that if the time interval between the central bar and the flankers is neither too short nor too long, the central bar becomes invisible even at large separations. These findings are inconsistent with traditional accounts of the cycling lateral masking displays in terms of local inhibitory mechanisms.

Skin fragility syndrome in a cat with feline infectious peritonitis and hepatic lipidosis.

PubMed

Trotman, Tara K; Mauldin, Elizabeth; Hoffmann, Vickie; Del Piero, Fabio; Hess, Rebecka S

2007-10-01

A 6-year-old spayed female domestic shorthair cat with a 3-week history of inappetence, weight loss, and hiding was examined. A palpable abdominal fluid wave, dehydration, and a small tear on the left flank were noted during initial examination. When the cat was gently restrained for blood sampling, the skin on the dorsal neck tore, leaving a 15 cm x 7 cm flap of skin. Clinicopathological abnormalities included nonregenerative anaemia, hypoalbuminaemia, increased globulin concentration, and mildly elevated aspartate aminotransferase and alkaline phosphatase activities. Abdominal fluid was viscous and had a total protein of 5.3 g dL(-1) with 316 cells microL(-1), consistent with a modified transudate. Cytology of the abdominal fluid revealed 86% nondegenerate neutrophils, 13% macrophages, and 1% small lymphocytes. Histopathological evaluation and indirect immunohistochemistry confirmed a diagnosis of feline infectious peritonitis, hepatic lipidosis and feline skin fragility syndrome. Feline skin fragility syndrome has not previously been reported in association with feline infectious peritonitis (FIP). Its inclusion as a clinical sign associated with FIP may facilitate a diagnosis.

Ground-State Structure of the Proton-Bound Formate Dimer by Cold-Ion Infrared Action Spectroscopy.

PubMed

Thomas, Daniel; Marianski, Mateusz; Mucha, Eike; Meijer, Gerard; Johnson, Mark A; von Helden, Gert

2018-06-19

The proton-bound dicarboxylate motif, RCOO-·H+·-OOCR, is a prevalent chemical configuration found in many condensed phase systems. We study the archetypal proton-bound formate dimer, HCOO-·H+·-OOCH, utilizing cold-ion infrared action spectroscopy in the photon energy range of 400-1800 cm-1. The spectrum obtained at ~0.4 K utilizing action spectroscopy of ions captured in helium nanodroplets is compared to that measured at ~10 K by photodissociation of Ar-ion complexes. Similar band patterns are obtained by the two techniques that are consistent with calculations for a C2 symmetry structure with a proton shared equally between the two formate moieties. Isotopic substitution experiments point to the nominal parallel stretch of the bridging proton appearing as a sharp, dominant feature near 600 cm-1. Multidimensional anharmonic calculations, however, reveal that the bridging proton motion is strongly coupled to the flanking -COO- framework, an effect that is qualitatively in line with the expected change in -C=O bond rehybridization upon protonation. © 2018 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Lobe Reconnection as a Source for the Cold Dense Plasma Sheet, Results from FAST and Cluster

NASA Astrophysics Data System (ADS)

Wilber, M.; McFadden, J. P.; Hull, A. J.; Brown, K.; Teste, A. F.

2010-12-01

Cold dense plasma sheet (CDPS) material is found along the flanks of the magnetopause during extended intervals of northward interplanetary magnetic field (IMF). The source for this population is the magnetosheath, and an un-resolved question is what mechanisms dominate in transporting, heating and accelerating it. Northward IMF is thought to be favorable for the Kelvin-Helmholtz instability (KHI), which can lead to turbulent mixing of plasma across the magnetopause. It is also thought favorable for high-latitude reconnection behind the cusps, which can permit direct injection and acceleration of particles. When newly-reconnected, cusp field lines on the day side contract due to magnetic tension, producing a characteristic velocity dispersion with faster particles arriving near Earth while field lines are still at higher latitudes (dE/dILAT~> 0). The low-altitude FAST spacecraft often observed overlapping energy dispersed ions (EDIs) during periods of northward IMF, leading to speculation that these signatures may be a near-Earth manifestation of CDPS material. These EDIs are a major focus of the present study. Our survey of FAST observations shows that during extended northward IMF intervals more than 80% of EDIs have dE/dILAT~> 0. A similar fraction of events have loss cones consistent with mirroring in the near hemisphere, suggesting that strong pitch-angle scattering is common and able to erase prior mirroring signatures. In contrast, during extended intervals of southward IMF EDIs shift location from the flanks to the night side, which might be expected for injection in the tail. For these, a little less than half show dE/dILAT~< 0, as would be expected for velocity dispersion during dipolarization. This suggests that adiabatic energization during field line relaxation can overcome velocity filtering effects. We also have examined a large number of CDPS events observed by Cluster and often find energy dispersed ions. These have loss cones that also correspond to mirroring in the near hemisphere, but we cannot establish that these have a high latitude injection source. Although conjugate observations are rare, we have found some simultaneous FAST data, which show dispersion with dE/dILAT~> 0, lending some support to a lobe reconnection source.

Delicate balance of magmatic-tectonic interaction at Kilauea Volcano, Hawai`i, revealed from slow slip events: Chapter 13

USGS Publications Warehouse

Montgomery-Brown, Emily; Poland, Michael; Miklius, Asta; Carey, Rebecca; Cayol, Valérie; Poland, Michael P.; Weis, Dominique

2015-01-01

Eleven slow slip events (SSEs) have occurred on the southern flank of Kilauea Volcano, Hawai’i, since 1997 through 2014. We analyze this series of SSEs in the context of Kilauea’s magma system to assess whether or not there are interactions between these tectonic events and eruptive/intrusive activity. Over time, SSEs have increased in magnitude and become more regular, with interevent times averaging 2.44 ± 0.15 years since 2003. Two notable SSEs that impacted both the flank and the magmatic system occurred in 2007, when an intrusion and small eruption on the East Rift Zone were part of a feedback with a SSE and 2012, when slow slip induced 2.5 cm of East Rift Zone opening (but without any change in eruptive activity). A summit inflation event and surge in East Rift Zone lava effusion was associated with a SSE in 2005, but the inferred triggering relation is not clear due to a poorly constrained slip onset time. Our results demonstrate that slow slip along Kilauea’s décollement has the potential to trigger and be triggered by activity within the volcano’s magma system. Since only three of the SSEs have been associated with changes in magmatic activity within the summit and rift zones, both the décollement and magma system must be close to failure for triggering to occur.

Ridge-flank crustal microbiology investigated with long-term borehole observatories

NASA Astrophysics Data System (ADS)

Orcutt, B. N.; Bach, W.; Becker, K.; Edwards, K. J.; Fisher, A. T.; Haddad, A.; Hulme, S.; Teske, A.; Toner, B.; Wheat, C. G.

2011-12-01

The ridge flank environment represents an important habitat for microbial life on Earth, considering its size and chemical disequilibria between circulating fluids and rocks. However, the potential for this habitat to harbor life, and the characteristics that such life might have, are poorly known at present. Furthermore, the interactions of microbial communities across deep sediment-basement interfaces are not well-characterized. Subseafloor borehole observatories provide a novel platform for sampling and monitoring the microbiology of the crustal ridge flank environment. We present current results from a series of subsurface microbial colonization experiments using borehole observatories on the eastern flank of the Juan de Fuca Ridge, as well as analysis of samples collected on a transect away from a seawater-recharging seamount on this ridge flank. These results are compared to the microbiology of observatories installed in the Costa Rica Rift flank with similar fluid composition and temperatures (i.e. anoxic and warm). We will also discuss on-going experiments on the western-flank of the Mid-Atlantic Ridge, where formation fluids in basement are oxic and cool. Results from these experiments represent some of the extremes in crustal fluid conditions, paving the way for additional studies that are needed to address the importance of this biome as a carbon reservoir and a mechanism for crustal alteration.

Flank eruptions of Mt Etna during the Greek-Roman and Early Medieval periods: New data from 226Ra-230Th dating and archaeomagnetism

NASA Astrophysics Data System (ADS)

Branca, Stefano; Condomines, Michel; Tanguy, Jean-Claude

2015-10-01

In this paper, we present new data from 226Ra-230Th dating and archaeomagnetism with the aim of improving the knowledge of the flank eruptions that occurred at Mt Etna during the Greek-Roman and Early Medieval periods, as defined in the new geological map of the volcano. The combination of the two dating techniques demonstrates that three major flank eruptions occurred on the lower north and west flanks during Greek-Roman epochs, producing large scoria cones and extensive lava flows. In particular, the Mt Ruvolo and Mt Minardo events highly impacted the territory of the west flank, notably by damming the Simeto River. The new data of the Millicucco and Due Monti lava flows, on the lower north-east flank, indicate a younger age than their stratigraphic ages quoted in the 2011 geological map, since they occurred around 700 and 500 AD, respectively. None of the large flank eruptions occurring on the lower slopes of Etna during the Early Medieval age are reported in the historical sources. Overall, our paper shows that a comprehensive assessment of eruptions at Mount Etna in the last three millennia can only be achieved through a multidisciplinary approach.

Observation of Pulsed Gamma Rays with Energies Greater than 250 keV from the Crab Nebula Pulsar NP 0532. Ph.D. Thesis

NASA Technical Reports Server (NTRS)

Orwig, L. E.

1971-01-01

Data from a balloon flight experiment using an Na I scintillation spectrometer were analyzed for gamma ray pulsation. The payload was carried to a nominal atmospheric depth of 3.5 g/cm2. A superposed epoch analysis was performed on a 12,000 second portion of the data spanning a total time interval of 16,700 seconds at float altitude. A positive pulsed contribution was observed at the expected apparent frequency of NP 0532 having the typical double pulse structure. The results indicate a time-averaged pulse photon flux of 0.00144 + or - 0.00057 photons/sq cm/sec in the energy interval from 250 keV to 2.3 MeV. This represents a time-averaged pulsed power of 0.000649 + or - 0.000257 keV/sq cm/sec/keV. The ratio of interpulse to main pulse was found to be 2.4 + or - 1.9. The analysis indicates a positive photon flux from 250 keV to 725 keV of 0.00120 + or - 0.00052 photons/sq cm/sec.

Cost and predictors of lost productive time in chronic migraine and episodic migraine: results from the American Migraine Prevalence and Prevention (AMPP) Study.

PubMed

Serrano, Daniel; Manack, Aubrey N; Reed, Michael L; Buse, Dawn C; Varon, Sepideh F; Lipton, Richard B

2013-01-01

To quantify the cost differences and predictors of lost productive time (LPT) in persons with chronic migraine (CM) and episodic migraine (EM). The American Migraine Prevalence and Prevention (AMPP) study is a US national longitudinal survey of severe headache. Cost estimates were obtained via U.S. Census income data. To elucidate the unique predictors of LPT, the optimal distribution for modeling was determined. Zero inflation models for LPT were predicted from sociodemographics, headache features, characteristics and disability, medication use, and depression. The interaction between headache status and age was the primary effect of interest. The eligible sample included 6329 persons with EM and 374 persons with CM. Men with CM aged 45 to 54 years cost employers nearly $200 per week more than do their EM counterparts. Likewise, for women, costs were higher for CM, with the cost differential between EM and CM being $90 per week. After comprehensive adjustment, increases in LPT with age were significantly higher in CM than in EM (rate ratio 1.03; 95% confidence interval 1.01-1.05). When age was recoded to a decade, metric rates of LPT increased 25% more per decade for CM than for EM (rate ratio 1.25; 95% confidence interval 1.004-1.5). LPT is more costly and increases more rapidly for those with CM than for those with EM as age increases. Copyright © 2013 International Society for Pharmacoeconomics and Outcomes Research (ISPOR). Published by Elsevier Inc. All rights reserved.

Fine Physical and Genetic Mapping of Powdery Mildew Resistance Gene MlIW172 Originating from Wild Emmer (Triticum dicoccoides)

PubMed Central

Han, Jun; Zhao, Xiaojie; Cui, Yu; Song, Wei; Huo, Naxin; Liang, Yong; Xie, Jingzhong; Wang, Zhenzhong; Wu, Qiuhong; Chen, Yong-Xing; Lu, Ping; Zhang, De-Yun; Wang, Lili; Sun, Hua; Yang, Tsomin; Keeble-Gagnere, Gabriel; Appels, Rudi; Doležel, Jaroslav; Ling, Hong-Qing; Luo, Mingcheng; Gu, Yongqiang; Sun, Qixin; Liu, Zhiyong

2014-01-01

Powdery mildew, caused by Blumeria graminis f. sp. tritici, is one of the most important wheat diseases in the world. In this study, a single dominant powdery mildew resistance gene MlIW172 was identified in the IW172 wild emmer accession and mapped to the distal region of chromosome arm 7AL (bin7AL-16-0.86-0.90) via molecular marker analysis. MlIW172 was closely linked with the RFLP probe Xpsr680-derived STS marker Xmag2185 and the EST markers BE405531 and BE637476. This suggested that MlIW172 might be allelic to the Pm1 locus or a new locus closely linked to Pm1. By screening genomic BAC library of durum wheat cv. Langdon and 7AL-specific BAC library of hexaploid wheat cv. Chinese Spring, and after analyzing genome scaffolds of Triticum urartu containing the marker sequences, additional markers were developed to construct a fine genetic linkage map on the MlIW172 locus region and to delineate the resistance gene within a 0.48 cM interval. Comparative genetics analyses using ESTs and RFLP probe sequences flanking the MlIW172 region against other grass species revealed a general co-linearity in this region with the orthologous genomic regions of rice chromosome 6, Brachypodium chromosome 1, and sorghum chromosome 10. However, orthologous resistance gene-like RGA sequences were only present in wheat and Brachypodium. The BAC contigs and sequence scaffolds that we have developed provide a framework for the physical mapping and map-based cloning of MlIW172. PMID:24955773

Mapping resistance to the Ug99 race group of the stem rust pathogen in a spring wheat landrace.

PubMed

Babiker, E M; Gordon, T C; Chao, S; Newcomb, M; Rouse, M N; Jin, Y; Wanyera, R; Acevedo, M; Brown-Guedira, G; Williamson, S; Bonman, J M

2015-04-01

A new gene for Ug99 resistance from wheat landrace PI 374670 was detected on the long arm of chromosome 7A. Wheat landrace PI 374670 has seedling and field resistance to stem rust caused by Puccinia graminis f. sp tritici Eriks. & E. Henn (Pgt) race TTKSK. To elucidate the inheritance of resistance, 216 BC1F2 families, 192 double haploid (DH) lines, and 185 recombinant inbred lines (RILs) were developed by crossing PI 374670 and the susceptible line LMPG-6. The parents and progeny were evaluated for seedling resistance to Pgt races TTKSK, MCCFC, and TPMKC. The DH lines were tested in field stem rust nurseries in Kenya and Ethiopia. The DH lines were genotyped with the 90K wheat iSelect SNP genotyping platform. Goodness-of-fit tests indicated that a single dominant gene in PI 374670 conditioned seedling resistance to the three Pgt races. The seedling resistance locus mapped to the long arm of chromosome 7A and this result was verified in the RIL population screened with the flanking SNP markers using KASP assays. In the same region, a major QTL for field resistance was detected in a 7.7 cM interval and explained 34-54 and 29-36% of the variation in Kenya and Ethiopia, respectively. Results from tests with specific Pgt races and the csIH81 marker showed that the resistance was not due to Sr22. Thus, a new stem rust resistance gene or allele, either closely linked or allelic to Sr15, is responsible for the seedling and field resistance of PI 374670 to Ug99.

Vertical hydraulic conductivity measurements in the Denver Basin, Colorado

USGS Publications Warehouse

Barkmann, P.E.

2004-01-01

The Denver Basin is a structural basin on the eastern flank of the Rocky Mountain Front Range, Colorado, containing approximately 3000 ft of sediments that hold a critical groundwater resource supplying many thousands of households with water. Managing this groundwater resource requires understanding how water gets into and moves through water-bearing layers in a complex multiple-layered sedimentary sequence. The Denver Basin aquifer system consists of permeable sandstone interbedded with impermeable shale that has been subdivided into four principle aquifers named, in ascending order, the Laramie-Fox Hills, Arapahoe, Denver, and Dawson aquifers. Although shale can dominate the stratigraphic interval containing the aquifers, there is very little empirical data regarding the hydrogeologic properties of the shale layers that control groundwater flow in the basin. The amount of water that flows vertically within the basin is limited by the vertical hydraulic conductivity through the confining shale layers. Low vertical flow volumes translate to low natural recharge rates and can have a profound negative impact on long-term well yields and the economic viability of utilizing the resource. To date, direct measurements of vertical hydraulic conductivity from cores of fine-grained sediments have been published from only five locations; and the data span a wide range from 1??10-3 to 1??10-11 cm/sec. This range may be attributable, in part, to differences in sample handling and analytical methods; however, it may also reflect subtle differences in the lithologic characteristics of the fine-grained sediments such as grain-size, clay mineralogy, and compaction that relate to position in the basin. These limited data certainly call for the collection of additional data.

Genetic analysis and fine mapping of a rice brown planthopper (Nilaparvata lugens Stål) resistance gene bph19(t).

PubMed

Chen, J W; Wang, L; Pang, X F; Pan, Q H

2006-04-01

Genetic analysis and fine mapping of a resistance gene against brown planthopper (BPH) biotype 2 in rice was performed using two F(2) populations derived from two crosses between a resistant indica cultivar (cv.), AS20-1, and two susceptible japonica cvs., Aichi Asahi and Lijiangxintuanheigu. Insect resistance was evaluated using F(1) plants and the two F(2) populations. The results showed that a single recessive gene, tentatively designated as bph19(t), conditioned the resistance in AS20-1. A linkage analysis, mainly employing microsatellite markers, was carried out in the two F(2) populations through bulked segregant analysis and recessive class analysis (RCA), in combination with bioinformatics analysis (BIA). The resistance gene locus bph19(t) was finely mapped to a region of about 1.0 cM on the short arm of chromosome 3, flanked by markers RM6308 and RM3134, where one known marker RM1022, and four new markers, b1, b2, b3 and b4, developed in the present study were co-segregating with the locus. To physically map this locus, the bph19(t)-linked markers were landed on bacterial artificial chromosome or P1 artificial chromosome clones of the reference cv., Nipponbare, released by the International Rice Genome Sequencing Project. Sequence information of these clones was used to construct a physical map of the bph19(t) locus, in silico, by BIA. The bph19(t) locus was physically defined to an interval of about 60 kb. The detailed genetic and physical maps of the bph19(t) locus will facilitate marker-assisted gene pyramiding and cloning.

Identification of gravitropic response indicator genes in Arabidopsis inflorescence stems

PubMed Central

Taniguchi, Masatoshi; Nakamura, Moritaka; Tasaka, Masao; Morita, Miyo Terao

2014-01-01

Differential organ growth during gravitropic response is caused by differential accumulation of auxin, that is, relative higher auxin concentration in lower flanks than in upper flanks of responding organs. Auxin responsive reporter systems such as DR5::GUS and DR5::GFP have usually been used as indicators of gravitropic response in roots and hypocotyls of Arabidopsis. However, in the inflorescence stems, the reporter systems don’t work well to monitor gravitropic response. Here, we aim to certify appropriate gravitropic response indicators (GRIs) in inflorescence stems. We performed microarray analysis comparing gene expression profiles between upper and lower flanks of Arabidopsis inflorescence stems after gravistimulation. Thirty genes showed > 2-fold differentially increased expression in lower flanks at 30 min, of which 19 were auxin response genes. We focused on IAA5 and IAA2 and verified whether they are appropriate GRIs by real-time qRT-PCR analyses. Transcript levels of IAA5 and IAA2 were remarkably higher in lower flanks than in upper flanks after gravistimulation. The biased IAA5 or IAA2 expression is disappeared in sgr2–1 mutant which is defective in gravity perception, indicating that gravity perception process is essential for formation of the biased gene expression during gravitropism. IAA5 expression was remarkably increased in lower flanks at 30 min after gravistimulation, whereas IAA2 expression was gradually decreased in upper flanks in a time-dependent manner. Therefore, we conclude that IAA5 is a sensitive GRI to monitor asymmetric auxin signaling caused by gravistimulation in Arabidopsis inflorescence stems. PMID:25763694

In situ time-series measurements of subseafloor sediment properties

USGS Publications Warehouse

Wheatcroft, R.A.; Stevens, A.W.; Johnson, R.V.

2007-01-01

The capabilities and diversity of subsurface sediment sensors lags significantly from what is available for the water column, thereby limiting progress in understanding time-dependent seabed exchange and high-frequency acoustics. To help redress this imbalance, a new instrument, the autonomous sediment profiler (ASP), is described herein. ASP consists of a four-electrode, Wenner-type resistivity probe and a thermistor that log data at 0.1-cm vertical intervals over a 58-cm vertical profile. To avoid resampling the same spot on the seafloor, the probes are moved horizontally within a 20 times 100-cm-2 area in one of three preselected patterns. Memory and power capacities permit sampling at hourly intervals for up to 3-mo duration. The system was tested in a laboratory tank and shown to be able to resolve high-frequency sediment consolidation, as well as changes in sediment roughness. In a field test off the southern coast of France, the system collected resistivity and temperature data at hourly intervals for 16 d. Coupled with environmental data collected on waves, currents, and suspended sediment, the ASP is shown to be useful for understanding temporal evolution of subsurface sediment porosity, although no large depositional or erosional events occurred during the deployment. Following a rapid decrease in bottom-water temperature, the evolution of the subsurface temperature field was consistent with the 1-D thermal diffusion equation coupled with advection in the upper 3-4 cm. Collectively, the laboratory and field tests yielded promising results on time-dependent seabed change.

The CO2 absorption continuum by high pressure CRDS in the 1.74 μm window

NASA Astrophysics Data System (ADS)

Mondelain, D.; Campargue, A.; Čermák, P.; Gamache, R. R.; Kassi, S.; Tashkun, S. A.; Tran, H.

2017-12-01

The very weak absorption continuum of CO2 is studied by Cavity Ring Down Spectroscopy in three 20 cm-1 wide spectral intervals near the centre of the 1.74 μm window (5693-5795 cm-1). For each spectral interval, a set of room temperature spectra is recorded at pressures between 0 and 10 bar thanks to a high pressure CRDS spectrometer. The absorption continuum is retrieved after subtraction of the contributions due to Rayleigh scattering and to local lines of CO2 and water (present as an impurity in the sample) from the measured extinction. Due to some deficiencies of the CO2 HITRAN2012 line list, a composite line list had to be built on the basis of the Ames calculated line list with line positions adjusted according to the Carbon Dioxide Spectroscopic Databank and self-broadening and pressure shift coefficients calculated with the Complex Robert Bonamy method. The local line contribution of the CO2 monomer is calculated using this list and a Voigt profile truncated at ±25 cm-1 from the line centre. Line mixing effects were taken into account through the use of the impact and Energy Corrected Sudden approximations. The density dependence of the retrieved continuum absorption was found to be purely quadratic in the low frequency interval below 5710 cm-1 but a small significant linear contribution was required to reproduce the observations above this value. This linear increase is tentatively attributed to the foreign-continuum of water vapor present in CO2 sample with a relative concentration of some tens ppm. The retrieved binary coefficient is observed to vary smoothly with the wavenumber with a minimum value of 6×10-10 cm-1 amagat-2. By gathering the present data with the results reported in Kassi et al. J Quant Spectrosc Radiat Transf 2015;167:97, a recommended set of binary coefficients is provided for the 5700-5950 cm-1 region.

Construction of High-Density Genetic Linkage Maps and Mapping of Growth-Related Quantitative Trail Loci in the Japanese Flounder (Paralichthys olivaceus)

PubMed Central

Niu, Yuze; Gao, Fengtao; Zhao, Yongwei; Zhang, Jing; Sun, Jian; Shao, Changwei; Liao, Xiaolin; Wang, Lei; Tian, Yongsheng; Chen, Songlin

2012-01-01

High-density genetic linkage maps were constructed for the Japanese flounder (Paralichthys olivaceus). A total of 1624 microsatellite markers were polymorphic in the reference family. Linkage analysis using JoinMap 4.0 resulted in the mapping of 1487 markers to 24 linkage groups, a result which was consistent with the 24 chromosomes seen in chromosome spreads. The female map was composed of 1257 markers, covering a total of 1663.8 cM with an average interval 1.35 cM between markers. The male map consisted of 1224 markers, spanning 1726.5 cM, with an average interval of 1.44 cM. The genome length in the Japanese flounder was estimated to be 1730.3 cM for the females and 1798.0 cM for the males, a coverage of 96.2% for the female and 96.0% for the male map. The mean recombination at common intervals throughout the genome revealed a slight difference between sexes, i.e. 1.07 times higher in the male than female. High-density genetic linkage maps are very useful for marker-assisted selection (MAS) programs for economically valuable traits in this species and for further evolutionary studies in flatfish and vertebrate species. Furthermore, four quantiative trait loci (QTL) associated with growth traits were mapped on the genetic map. One QTL was identified for body weight on LG 14 f, which explained 14.85% of the total variation of the body weight. Three QTL were identified for body width on LG14f and LG14m, accounting for 16.75%, 13.62% and 13.65% of the total variation in body width, respectively. The additive effects were evident as negative values. There were four QTL for growth traits clustered on LG14, which should prove to be very useful for improving growth traits using molecular MAS. PMID:23209734

Survival of Flux Transfer Event (FTE) Flux Ropes Far Along the Tail Magnetopause

NASA Technical Reports Server (NTRS)

Eastwood, J. P.; Phan, T. D.; Fear, R. C.; Sibeck, D. G.; Angelopoulos, V.; Oieroset, M.; Shay, M. A.

2012-01-01

During intervals of southward IMF, magnetic reconnection can result in the formation of flux transfer events (FTEs) on the dayside magnetopause which travel along the magnetopause in the anti-sunward direction. Of particular interest is their fate and the role they play transporting solar wind plasma into the magnetosphere. We present the discovery of FTEs far along the distant tail magnetopause (x = 67 Earth radii) using data from ARTEMIS on the dusk flank magnetopause under southward/duskward IMF conditions. The identification of several events is further supported by excellent fits to a force-free flux rope model. The axis of each structure is principally north-south, i.e., perpendicular to the Sun-Earth line. Simultaneous observations by THEMIS on the dayside magnetopause indicate that FTEs are being produced there, although perhaps 2-4 times smaller in size. The convection time from the dayside magnetopause to ARTEMIS is 30 min, and the FTEs have a flux content comparable to those typically observed on the dayside magnetopause, indicating that these features are in quasi-equilibrium as they are convected downtail. By considering the relative orientations of the FTEs observed by THEMIS and ARTEMIS, the magnetic field geometry is consistent with the FTEs being produced on the dayside magnetopause along an extended X-line in the presence of IMF By and bending as they are convected to the flanks.

Two encounters with the flank low-latitude boundary layer - Further evidence for closed field topology and investigation of the internal structure

NASA Technical Reports Server (NTRS)

Traver, D. P.; Mitchell, D. G.; Williams, D. J.; Frank, L. A.; Huang, C. Y.

1991-01-01

The structure of the flank low-latitude boundary layer (LLBL) is examined through differential energy spectra and particle angular anisotropies for traversals of the dawn flank (December 19, 1977) and dusk flank (July 7, 1978) during periods of predominantly northward magnetosheath field orientation. Spectra are presented that were obtained from combined ISEE 1 low-energy-proton and electron-differential-energy-analyzer and medium-energy-particle-instrument data extending over the 200-eV/q to 2-MeV energy range for the plasma sheet, stagnation region, outer LLBL, and magnetosheath regions. The stagnation region and the outer LLBL are each a mixture of plasma-sheet and magnetosheath populations, but the stagnation region contains a relatively higher fraction of plasma sheet particles, consistent with its placement earthward of the outer LLBL. Evidence for energization of thermal electrons appears during the dusk flank crossing. Bidirectional field-aligned ion distributions are observed with typically 5-to-1 enhancement of the flux along the magnetic field during certain portions of the dusk flank crossing.

Numerical modeling of magma-tectonic interactions at Pacaya Volcano, Guatemala

NASA Astrophysics Data System (ADS)

Wauthier, C.

2017-12-01

Pacaya Volcano is composed of several volcanic cones located along the southern rim of the Amatitlan caldera, approximately 25 km south of Guatemala City. It is a basaltic volcano located in the Central American Volcanic Arc. The shallow magma plumbing system at Pacaya likely includes at least three magma reservoirs: a very shallow ( 0.2-0.4 km depth) reservoir located below and possibly within the MacKenney cone, a 4 km deep reservoir located northwest of the summit, and a shallow dike-like conduit below the summit which fed the recent flank eruptions. Pacaya's western flank is slipping in a stick-slip fashion, and the instability seems associated with larger volume eruptions. Flank instability phases indeed occurred in 2010 and 2014 in coincidence with major intrusive and eruptive phases, suggesting a positive feedback between the flank motion and major intrusions. Simple analytical models are insufficient to fit the geodetic observations and model the flank processes and their mechanical interactions with the magmatic system. Here, numerical modeling approaches are used to characterize the 2014 flank deformation episode and magma-tectonic interactions.

The GNSS network at Piton de la Fournaise

NASA Astrophysics Data System (ADS)

Staudacher, Thomas; Peltier, Aline; Boissier, Patrice; Di Muro, Andrea; Kowalski, Philippe; Lauret, Frederic

2013-04-01

The Piton de la Fournaise volcano at La Réunion Island in the western Indian Ocean is amongst the most active volcanoes in the world with a mean over 2 centuries of one eruption every 9 month. Since 1998 up to 4 eruptions occurred per year. The volcanological observatory, which is a branch of the Institut de Physique du Globe de Paris, is in charge of the monitoring of the volcanic activity and the prediction of eruptions by means of several networks: deformation, seismicity and gas emission. We will focus here on the GNSS network. The permanent GNSS network consist in 25 stations, 5 stations around the summit craters "Bory" and "Dolomieu", 5 stations at the base of the central cone at about 2 km away from the summit, 6 stations on the eastern flank in the Grandes Pentes and Grand Brûlé area. Two stations are situated north and south outside of the Enclos Fouqué Caldera. Four basis stations are situated farther away outside of the caldera Fouqué at high and low elevation. Very first GPS measurements at Piton de la Fournaise were attempted since 1994 between Bory (BORG) and "Enclos Zéro" (ENCG). The present permanent network was built up since 2004; the central network, covering the volcanic cone was upgraded till 2006. Between end 2009 and early 2010 the eastern flank, which is difficult to access, was equipped in the frame of the "Undervolc program". Data acquisition is usually done every 30 seconds, but can be incremented to 1Hz and even to 20 Hz for the most recent NetR9 receivers. Data files were transmitted by radio every day and evaluated. Presently we move the daily evaluation of the data from Winprism to Gamit, which shows in some cases more precise results, in particular when we compare stations at low and high elevation. The cinematic GPS network consist today in 78 sites, equipped with stainless steel rods cemented in the rock or fixed on metallic tripods. These sites are measured routinely one or two times per year, or more often in case of eruptions or particular events. Finally 3 stations are situated on the 60 meter thick exceptional April 2007 lava flow and record the subsidence of the thick lava flow. The GNSS data, and in particular the base line changes, which are much more precise than DGPS, indicate a general increase between several days and several weeks before each eruption. These increases correspond to an inflation of the massif and allow precise forecasting. It also shows a systematic change after the 2007 collapse of the Dolomieu crater. After eliminating quick deformations due to eruptive and pre-eruptive events, the base lines indicate a general increase (or inflation) of Piton de la Fournaise central cone before 2007, while after the summit collapse in 2007 the base lines changes indicates a still ongoing deflation of the massif. More recent data from the Grandes Pentes and the Grand Brûlé area reveal a continuous shift of the east flank of Piton de la Fournaise to the east with a rate of up to 3 cm per year and a subsidence of up to 4 cm per year, most probably due to a large sill injected beneath the east flank end March 2007 just before the April eruption.

Layered Fault Rocks Below the West Salton Detachment Fault (WSDF), CA Record Multiple Seismogenic? Slip Events and Transfer of Material to a Fault Core

NASA Astrophysics Data System (ADS)

Axen, G. J.; Luther, A. L.; Selverstone, J.; Mozley, P.

2011-12-01

Unique layered cataclasites (LCs) occur locally along footwall splays, S of the ~N-dipping, top-E WSDF. They are well exposed in a NW-plunging antiform that folds the LCs and their upper and lower bounding faults. Layers range from very fine-grained granular shear zones 1-2 mm thick and cm's to m's long, to medium- to coarse-grained isotropic granular cataclasite with floating clasts up to 4-5 cm diameter in layers up to ~30 cm thick and 3 to >10 m long. The top, N-flank contact is ~5 m structurally below the main WSDF. Maximum thickness of the LCs is ~5 m on the S flank of the antiform, where the upper 10-50 cm of LCs are composed of relatively planar layers that are subparallel to the upper fault, which locally displays ultracataclasite. Deeper layers are folded into open to isoclinal folds and are faulted. Most shear-sense indicators show N-side-to-E or -SE slip, and include: (1) aligned biotite flakes and mm-scale shear bands that locally define a weak foliation dipping ~ESE, (2) sharp to granular shears, many of which merge up or down into fine-grained layers and, in the base of the overlying granodiorite, (3) primary reidel shears and (4) folded pegmatite dikes. Biotite is unaltered and feldspars are weakly to strongly altered to clays and zeolites. Zeolites also grew in pores between clasts. XRF analyses suggest minimal chemical alteration. The upper fault is sharp and relatively planar, carries granular to foliated cataclasitic granodiorite that grades up over ~2-4 m into punky, microcracked but plutonic-textured rock with much of the feldspar alteration seen in LC clasts. Some upper-plate reidels bend into parallelism with the top fault and bound newly formed LC layers. The basal fault truncates contorted layers and lacks evidence of layers being added there. We infer that the deeper, contorted layers are older and that the LC package grew upward by transfer of cataclasized slices from the overlying granodiorite while folding was ongoing. Particle-size distributions reflect constrained comminution and shear localization (slopes of ~3-3.5 on log-log plots of grain size vs. no. of grains > grain size). The LCs require episodic slip events that probably record dozens of seismic cycles. Foliation likely records post- or interseismic creep. Geometric complexities among the WSDF footwall splays presumably caused episodic dilation that allowed accumulation and folding of the LCs. Mechanical processes dominated over chemical processes. A key question is why the LCs apparently were stronger than the overlying granodiorite, leading to formation of new LC layers rather than significant reworking of older layers.

Volcano ecology at Chaiten, Chile: geophysical processes interact with forest ecosystems

NASA Astrophysics Data System (ADS)

Swanson, F. J.; Crisafulli, C.; Jones, J. A.; Lara, A.

2010-12-01

The May 2008 eruption of Chaiten Volcano (Chile) offers many insights into volcano ecology -ecological responses to volcanic and associated hydrologic processes and ecosystem development in post-eruption landscapes. Varied intensities of pyroclastic density currents (PDC) and thickness of tephra fall deposits (to 50+ cm) created strong gradients of disturbance in several hundred square kilometers of native forest in a sector north to southeast from the volcano. A gradient from tree removal to toppled forest to standing, scorched forest extends 1.5 km northward from the caldera rim along the trajectory of a PDC. Close to the vent (e.g., 2 km NE from rim) a rain of ca. 10 cm of gravel tephra stripped foliage and twigs from tree canopies; farther away (23 km SE) 10 cm of fine tephra loaded the canopy, causing extensive fall of limbs >8 cm diameter. Even in the severely disturbed, north-flank PDC zone, surviving bamboo, ferns, and other herbs sprouted from pre-eruption soil and other refugia; sprouts of new foliage appeared on the boles and major limbs of several species of toppled and scorched, standing trees; animals including vertebrates (rodents and amphibians) and terrestrial invertebrates (e.g., insects and arachnids) either survived or quickly recolonized; and a diverse fungal community began decomposing the vast dead wood resource. During the second growing season we documented the presence of some plant species that had colonized by seed. Within two years after the eruption secondary ecological disturbances resulting from channel change and overbank deposition of fluvially transported tephra created new patches of damaged forest in riparian zones of streams draining the north flank and along the Rio Rayas and Rio Chaiten. These features parallel observations in the intensively-studied, post-1980-eruption landscape of Mount St. Helens over a similar time period. However, several aspects of ecological response to the two eruptions differ because of differences in biota and geophysical processes and products. For example, many tree species at Chaiten are angiosperms (i.e., broadleaf evergreen species) that have an ability to resprout following defoliation, whereas gymnosperms (conifers) that dominated the Mount St. Helens landscape perished immediately. The long-term persistence of severely damaged, but sprouting trees at Chaiten is unclear. Both sites appear to have “hot spots” and “cold spots” of rapid versus slow vegetation regeneration, influenced by initial patterns of survival and secondary disturbances. Many questions remain, such as the role of chemical deposition (e.g., HCl) in foliage damage in either eruption. Our experiences at Mount St. Helens and Chaiten highlight the value of observations made as early as possible after an eruption, long-term continuation of study, work in interdisciplinary teams, and establishment of basic protocols for volcano ecology study.

Impact of Microorganisms on the Dynamics of Unsaturated Flow Within Fractures

NASA Astrophysics Data System (ADS)

Stoner, D. L.; Stedtfeld, R. D.; Tyler, T. L.; White, F. J.; McJunkin, T. R.

2002-12-01

Understanding the impact of microorganisms on fluid flow in groundwater and subsurface environments is of significance because of the importance of natural water resources, contaminant transport, and in situ bioprocesses such as mineral dissolution and recovery, enhanced oil recovery, and remediation. In this study, the impact of microorganisms and nutrient amendments on the behavior of water within a fracture system was evaluated using an experimental system comprised of limestone blocks and a groundwater isolate, {\\ it Sphingomonas} sp. Four blocks (25 cm x 6.6 cm x 5 cm) were configured to make a vertical fracture (50.2 x 5 x 0.07 cm) that was intersected by a horizontal fracture (13.4 x 5 x 0.1 cm). To monitor the behavior of water within the fracture, 5 optical sensors each consisting of a light emitting diode and photocell were installed external to the vertical fracture. Two were installed above the fracture intersection, two below and one at the intersection. The presence of fluid in the fracture was detected as a decrease in light transmission as the fluid passed by each detector. Drop interval (the period of time between succeeding drops at the same detector) and drop width (the period of time it took for a water drop or stream to pass by each detector) data were collected for each of the five detectors. Liquids were introduced via a single needle at the top of the fracture at a rate of 0.5 ml/min. Deionized water, which had been chemically equilibrated with the limestone rock, was the control medium to which 1) cells; 2) cells with 0.01% yeast extract; 3) cells with 0.1% yeast extract; and 4) cells with 0.1% yeast extract and 30 mM urea were added. For the equilibrated water, drop intervals and drop widths above the fracture intersection were ~1 s and <0.1 s, respectively. Drop intervals and drop widths at and below the intersection were ~100 s and ~10 s, respectively. Above the fracture intersection, the addition of cells or cells with 0.01% yeast extract had little effect on drop intervals and drop widths. At and below the intersection, however, drop intervals increased to ~500 s and drop widths to ~10 s. Later with the addition of 0.1% yeast extract or 0.1% yeast extract with urea, drop interval and drop width immediately increased at locations above the fracture intersection and within 24 hours, continuous streaming was observed. For the lower sensors, drop interval and drop width initially decreased, followed by continuous streaming the day after the 0.1% yeast extract and urea was added to the system. In conclusion, the dynamics of drop behavior in fracture systems is a complex process that is impacted by the presence of bacteria and nutrient amendments as well as the fracture configuration.

New insight into the relationships between stress, strain and mass change at Mt. Etna during the period between the 1993-94 and 2001 eruptions

NASA Astrophysics Data System (ADS)

Carbone, Daniele; Aloisi, Marco; Vinciguerra, Sergio; Puglisi, Giuseppe

2014-05-01

During the time interval between the 1991-93 and 2001 main flank eruptions of Mt. Etna, volcanic activity was confined to the summit vents. Ground deformation and tomography studies suggest that this activity was fed by a magma body located beneath the north-west flank of the volcano, at a depth of around 7 km b.s.l.. Conversely, gravity studies indicate that the most important mass redistributions during the same period took place within an elongated volume centered below the southeastern sector of the volcano, at depths of 2-4 km b.s.l.. The phases of gravity decrease during the 1994-2001 period coincide with phases of higher strain release rate. The coupling between gravity and seismic data could reflect changes in the rate of micro-fracturing along the NNW-SSE weakness zone that cuts the SE slope of the volcano. This interpretation allows to explain why the main pressure and mass sources active at Etna during the 1994-2001 period do not coincide. The extensional dynamics of the southeastern flank of Etna may represent a second-order effect, triggered by the pressure source below the western flank and accommodated along the NNW-SSE weakness zone. In order to gain quantitative insight into the relationship between stress, strain and mass changes at Etna during the 1994-2001 period, we use a finite element modeling approach. Relying on recent studies involving stress- and temperature-induced degradation of the mechanical properties of rocks, we hypothesize that the inferred NNW-SSE weakness zone is characterized by an anomalously low Young's modulus (E). Results of our analysis are summarized in the following two points. (i) The presence of the weakness zone creates a distortion of the displacements field induced by the deeper pressure source, locally resulting in a weak extensional regime. This finding supports the hypothesis of a cause-effect relation between deeper pressurization beneath the western flank and shallower extension across the fracture zone beneath the SE flank of the volcano. However, the bulk extension across the weakness zone which is only due to pressurization of the magma reservoir is not sufficient to induce the observed gravity changes through changes in the rate of microfracturing. We suggest that propagation of pressurized gas, enhanced by the extensional regime across the NNW-SSE weakness zone, may have exerted tensile stresses across it, in turn increasing the bulk extension. (ii) For a given tensile stress across the fracture zone, the bulk extension increases proportionally as the value of E in the weakness zone decreases, while the ground deformation remains almost the same. This provides an explanation to understand how, during the studied period, the inferred changes in the bulk rate of microfracturing along the NNW-SSE weakness zone could have occurred with an associated small ground deformation. Indeed, we found that, as the value of E in correspondence of the fracture zone decreases, the ratio between deep extension and maximum ground displacement increases and, for values of E equal or less than about 10 GPa, deep extension of 1-2 m can develop with deformation of the surface close to the detection limit of GPS measurements. Our results highlight the importance of performing gravity studies at at volcanoes where there exists a causal link between medium fracturing and volcanic activity.

Thermostability of photosystem I trimers and monomers from the cyanobacterium Thermosynechococcus elongatus

NASA Astrophysics Data System (ADS)

Shubin, Vladimir V.; Terekhova, Irina V.; Bolychevtseva, Yulia V.; El-Mohsnawy, Eithar; Rögner, Matthias; Mäntele, Werner; Kopczak, Marta J.; Džafić, Enela

2017-05-01

The performance of solar energy conversion into alternative energy sources in artificial systems highly depends on the thermostability of photosystem I (PSI) complexes Terasaki et al. (2007), Iwuchukwu et al. (2010), Kothe et al. (2013) . To assess the thermostability of PSI complexes from the thermophilic cyanobacterium Thermosynechococcus elongatus heating induced perturbations on the level of secondary structure of the proteins were studied. Changes were monitored by Fourier transform infrared (FT-IR) spectra in the mid-IR region upon slow heating (1 °C per minute) of samples in D2O phosphate buffer (pD 7.4) from 20 °C to 100 °C. These spectra showed distinct changes in the Amide I region of PSI complexes as a function of the rising temperature. Absorbance at the Amide I maximum of PSI monomers (centered around 1653 cm- 1), gradually dropped in two temperature intervals, i.e. 60-75 and 80-90 °C. In contrast, absorbance at the Amide I maximum of PSI trimers (around 1656 cm- 1) dropped only in one temperature interval 80-95 °C. The thermal profile of the spectral shift of α-helices bands in the region 1656-1642 cm- 1 confirms the same two temperature intervals for PSI monomers and only one interval for trimers. Apparently, the observed absorbance changes at the Amide I maximum during heating of PSI monomers and trimers are caused by deformation and unfolding of α-helices. The absence of absorbance changes in the interval of 20-65 °C in PSI trimers is probably caused by a greater stability of protein secondary structure as compared to that in monomers. Upon heating above 80 °C a large part of α-helices both in trimers and monomers converts to unordered and aggregated structures. Spectral changes of PSI trimers and monomers heated up to 100 °C are irreversible due to protein denaturation and non-specific aggregation of complexes leading to new absorption bands at 1618-1620 cm- 1. We propose that monomers shield the denaturation sensitive sides at the monomer/monomer interface within a trimer, making the oligomeric structure more stable against thermal stress.

Instability of Hawaiian volcanoes: Chapter 4 in Characteristics of Hawaiian volcanoes

USGS Publications Warehouse

Denlinger, Roger P.; Morgan, Julia K.; Poland, Michael P.; Takahashi, T. Jane; Landowski, Claire M.

2014-01-01

All seaward flank movement occurs along a detachment fault, or décollement, that forms within the mixture of pelagic clays and volcaniclastic deposits on the old seafloor and pushes up a bench of debris along the distal margin of the flank. The offshore uplift that builds this bench is generated by décollement slip that terminates upward into the overburden along thrust faults. Finite strain and finite strength models for volcano growth on a low-friction décollement reproduce this bench structure, as well as much of the morphology and patterns of faulting observed on the actively growing volcanoes of Mauna Loa and Kīlauea. These models show how stress is stored within growing volcano flanks, but not how rapid, potentially seismic slip is triggered along their décollements. The imbalance of forces that triggers large, rapid seaward displacement of the flank after decades of creep may result either from driving forces that change rapidly, such as magma pressure gradients; from resisting forces that rapidly diminish with slip, such as those arising from coupling of pore pressure and dilatancy within décollement sediment; or, from some interplay between driving and resisting forces that produces flank motion. Our understanding of the processes of flank motion is limited by available data, though recent studies have increased our ability to quantitatively address flank instability and associated hazards.

[Diet, selectivity and trophic overlap between the sizes of silverside Menidia humboldtiana (Atheriniformes: Atherinopsidae) in the reservoir Tiacaque, Mexico].

PubMed

Sánchez, Regina; Ochoa, Abigahil; Mendoza, Angélica

2013-06-01

D Menidia humboldtiana, a native species of Mexico, is a common inhabitant of local reservoirs. It represents a highly appreciated fish of economic importance in the central part of the country because of its delicate flavor. Trophic behavior of this species is important to understand the relationships with other fish species in reservoirs. With the aim to study this specific topic, the trophic spectrum, selectivity coefficient and overlap, were determined among different sizes of the Silverside M humboldtiana. For this, both zooplankton and fish samples were taken during four different seasons of 1995. Zooplankton samples were taken through a mesh (125 micron), and all organisms were identified to generic level. Fish were captured and grouped into standard length intervals per season, and the stomach contents were obtained and analyzed. Trophic interactions included the stomach contents analysis (Laevastu method), the coefficient of selection (Chesson) and the trophic overlap (Morisita index modified by Horn) between sizes. A total of 14 zooplankton genera were identified, of which Bosmina was the most abundant (29 625 ind./10 L) followed by Cyclops (9496 ind./10 L), during the spring. Small size fishes (1-4.9cm) consumed high percentages of Cyclops in the spring (61.24%) and winter (69.82%). Ceriodaphnia was consumed by fish sizes of 3-10.9cm (72.41%) and 13-14.9cm (95.5%) during the summer; while in autumn, small sizes (1-4.9cm) ingested Mastigodiaptomus and Ceriodaphnia; Daphnia and Bosmina were consumed by fishes of 5-8.9cm and the biggest sizes (9-14.9 cm) feed on Ceriodaphnia. M. humboldtiana makes a selective predation by the genera Ceriodaphnia, Daphnia, Mastigodiaptomus, Bosmina and Cyclops, depending on the size length interval. The trophic overlap was very marked among all sizes on spring, autumn and winter, unlike in summer fish of 1-2.9 and 11-12.9 cm did not show overlap with other length intervals. M humboldtiana is a zooplanktivore species, which performs a selective predation and a marked trophic overlap between the different fish sizes.

Multi-channel System for Beat to Beat QT Interval Variability and its Use in Screening for Coronary Artery Disease and Cardiomyopathy

NASA Technical Reports Server (NTRS)

Starc, V.; Schlegel, T. T.; Arenare, B.; Greco, E. C.; DePalma, J. L.; Nunez, T.; Medina, R.; Jugo, D.; Rahman, M. A.; Delgado, R.

2007-01-01

We investigated the ability of beat-to-beat QT interval variability (QTV) and related parameters to differentiate healthy individuals from patients with obstructive coronary artery disease (CAD) and cardiomyopathy (CM). For this purpose we developed a PC-based ECG software program that in real time, acquires, analyzes and displays QTV in each of the eight independent channels that constitute the 12-lead conventional ECG. The system also analyzes and displays the QTV from QT interval signals that are derived from multiple channels and from singular value decomposition (SVD) to substantially reduce the effect of noise and other artifacts on the QTV results. It also provides other useful SVD-related parameters such as the normalized 3-dimensional volume of the T wave (nTV) = 100*(rho(sub 2)*rho(sub 3)rho(sub 1^2). Advanced high-fidelity 12-lead ECG tests (approx. 5-min supine) were first performed on a "training set" of 99 individuals: 33 with ischemic or dilated CM and low ejection fraction (EF less than 40%); 33 with catheterization-proven obstructive CAD but normal EF; and 33 age-/gender-matched healthy controls. All QTV parameters that were studied for their accuracy in detecting CM and CAD significantly differentiated both CM and CAD from controls (p less than 0.0001). Retrospective areas under the ROC curve (AUC) of SDNN-QTV, rmsSD-QTV, and QTV Index (QTVI) for CM vs. controls in the lead V5 were 0.85, 0.90, and 0.99, respectively, and those for CAD vs. controls in the lead II were 0.82, 0.82, and 0.89. Other advanced ECG parameters, such as HFQRS RAZ score, LF Lomb of RRV or QRS-T angle, differentiated both CM and CAD from controls less significantly, with the respective AUC values of 0.89, 0.88 and 0.98 for CM vs. controls, and 0.73, 0.71 and 0.80 for CAD vs. controls. QTV parameters (especially QTVI, which is QTV as indexed to RRV) were, diagnostically speaking, amongst the best performing of the advanced ECG techniques studied thus far.

Demonstration of periodic nanostructure formation with less ablation by double-pulse laser irradiation on titanium

NASA Astrophysics Data System (ADS)

Furukawa, Yuki; Sakata, Ryoichi; Konishi, Kazuki; Ono, Koki; Matsuoka, Shusaku; Watanabe, Kota; Inoue, Shunsuke; Hashida, Masaki; Sakabe, Shuji

2016-06-01

By pairing femtosecond laser pulses (duration ˜40 fs and central wavelength ˜810 nm) at an appropriate time interval, a laser-induced periodic surface structure (LIPSS) is formed with much less ablation than one formed with a single pulse. On a titanium plate, a pair of laser pulses with fluences of 70 and 140 mJ/cm2 and a rather large time interval (>10 ps) creates a LIPSS with an interspace of 600 nm, the same as that formed by a single pulse of 210 mJ/cm2, while the double pulse ablates only 4 nm, a quarter of the ablation depth of a single pulse.

Sedimentological and geochemical record of submarine mine tailing footprint in Repparfjorden (Northern Norway)

NASA Astrophysics Data System (ADS)

Sternal, Beata; Junttila, Juho; Pedersen, Kristine Bondo; Skirbekk, Kari; Forwick, Matthias; Carroll, JoLynn

2016-04-01

The knowledge on understanding the physical, chemical and biological processes dominating in marine system affected by submarine tailings disposal (STD) remains limited and further knowledge to make reliable long-term predictions of future environmental impacts is needed. One way of contributing to this is by investigation of marine environments already affected by the tailings discharge in the past. We present preliminary results from a multidisciplinary study of marine sediments from Repparfjorden in northern Norway, a fjord that was influenced by the deposition of tailings from a copper mine during the 1970's. The study is a part of the competence cluster Environmental Waste Management (EWMA) that as one of its important aims has advancing the knowledge of spreading of mine-tailing related contaminants. Here we give particular attention to the reconstruction of sedimentation style, rate of sediment accumulation, as well as potential sediment transport paths (contaminants dispersion). Seventeen short cores (up to 21 cm long) were retrieved from sites covering the entire area of Repparfjorden. The cores were sliced into 1-cm intervals that are and will be analysed for grain-size, concentration of heavy metals and total organic carbon content of bulk sediment. Sediment chronologies are and will be derived using 210Pb and 137Cs dating techniques. An approximately 7-cm thick interval which is different from present fjord sedimentation was observed below c. 10 cm depth in three of the cores retrieved from the area of tailings deposition in the 1970's. Sediments of this discrete depth interval are mainly composed of mud or sandy mud with bimodal grain-size distribution (first mode: medium silt fraction; second mode: very coarse silt). They are characterised by very high Cu concentrations (>250 mg/kg). Preliminary measurements of the 210Pb activity indicate an increase in sediment accumulation rate during the deposition of this interval. Therefore, we interpret it to be mainly composed of mine tailing sediments. As this sediment interval was only observed in 3 of 17 cores, we suggest that the lateral extent of the tailings is restricted to a relatively small area of the fjord. However, elevated concentrations of Cu (40-80 mg/kg) were also detected in a discrete sediment interval (3-10 cm) in one core ˜3 km beyond the tailing deposition site. In addition, high Cu concentrations (60-190 mg/kg) in sediments between the seafloor and the tailing deposit, as well as some centimetres below the deposit (in all cores from the old tailing deposition site) suggest possible dispersion of Cu to the immediate surrounding sediments in the cores.

Invited review: Incidence, risk factors, and effects of clinical mastitis recurrence in dairy cows.

PubMed

Jamali, Hossein; Barkema, Herman W; Jacques, Mario; Lavallée-Bourget, Eve-Marie; Malouin, François; Saini, Vineet; Stryhn, Henrik; Dufour, Simon

2018-06-01

Clinical mastitis (CM) is one of the most frequent and costly diseases in dairy cows. A frustrating aspect of CM is its recurrent nature. This review was conducted to synthesize knowledge on risk of repeated cases of CM, effects of recurrent CM cases, and risk factors for CM recurrence. A systematic review methodology was used to identify articles for this narrative review. Searches were performed to identify relevant scientific literature published after 1989 in English or French from 2 databases (PubMed and CAB Abstracts) and 1 search platform (Web of Science). Fifty-seven manuscripts were selected for qualitative synthesis according to the inclusion criteria. Among the 57 manuscripts selected in this review, a description of CM recurrence, its risk factors, and effects were investigated and reported in 33, 37, and 19 selected manuscripts, respectively. Meta-analysis and meta-regression analyses were used to compute risk ratio comparing risk of CM in cows that already had 1 CM event in the current lactation with risk of CM in healthy cows. For these analyses, 9 manuscripts that reported the total number of lactations followed and the number of lactations with ≤1 and ≤2 CM cases were used. When summarizing results from studies requiring ≥5 d between CM events to consider a CM event as a new case, we observed no significant change in CM susceptibility following a first CM case (risk ratio: 0.99; 95% confidence interval: 0.86-1.14). However, for studies using a more liberal CM recurrence definition (i.e., only 24 h between CM events to consider new CM cases), we observed a 1.54 times greater CM risk (95% confidence interval: 1.20-1.97) for cows that already had 1 CM event in the current lactation compared with healthy cows. The most important risk factors for CM recurrence were parity (i.e., higher risk in older cows), a higher milk production, pathogen species involved in the preceding case, and whether a bacteriological cure was observed following the preceding case. The most important effects of recurrent CM were the milk yield reduction following a recurrent CM case, which was reported to be similar to that of the first CM case, and the increased risk of culling and mortality, which were reported to surpass those of first CM cases. Copyright © 2018 American Dairy Science Association. Published by Elsevier Inc. All rights reserved.

Contribution of proline to the pre-structuring tendency of transient helical secondary structure elements in intrinsically disordered proteins.

PubMed

Lee, Chewook; Kalmar, Lajos; Xue, Bin; Tompa, Peter; Daughdrill, Gary W; Uversky, Vladimir N; Han, Kyou-Hoon

2014-03-01

IDPs function without relying on three-dimensional structures. No clear rationale for such a behavior is available yet. PreSMos are transient secondary structures observed in the target-free IDPs and serve as the target-binding "active" motifs in IDPs. Prolines are frequently found in the flanking regions of PreSMos. Contribution of prolines to the conformational stability of the helical PreSMos in IDPs is investigated. MD simulations are performed for several IDP segments containing a helical PreSMo and the flanking prolines. To measure the influence of flanking-prolines on the structural content of a helical PreSMo calculations were done for wild type as well as for mutant segments with Pro→Asp, His, Lys, or Ala. The change in the helicity due to removal of a proline was measured both for the PreSMo region and for the flanking regions. The α-helical content in ~70% of the helical PreSMos at the early stage of simulation decreases due to replacement of an N-terminal flanking proline by other residues whereas the helix content in nearly all PreSMos increases when the same replacements occur at the C-terminal flanking region. The helix destabilizing/terminating role of the C-terminal flanking prolines is more pronounced than the helix promoting effect of the N-terminal flanking prolines. This work represents a novel example demonstrating that a proline is encoded in an IDP with a defined purpose. The helical PreSMos presage their target-bound conformations. As they most likely mediate IDP-target binding via conformational selection their helical content can be an important feature for IDP function. Copyright © 2013 Elsevier B.V. All rights reserved.

Flanking genes of an essential gene give information about the evolution of metazoa.

PubMed

Zimek, Alexander; Weber, Klaus

2011-04-01

We collected as much information as possible on new lamin genes and their flanking genes. The number of lamin genes varies from 1 to 4 depending more or less on the phylogenetic position of the species. Strong genome drift is recognised by fewer and unusually placed introns and a change in flanking genes. This applies to the nematode Caenorhabditis elegans, the insect Drosophila melanogaster, the urochordate Ciona intestinalis, the annelid Capitella teleta and the planaria Schmidtea mediterranea. In contrast stable genomes show astonishing conservation of the flanking genes. These are identical in the sea anemone Nematostella vectensis and the cephalochordate Branchiostoma floridae lamin B1 gene. Even in the lamin B1 genes from Xenopus tropicalis and man one of the flanking genes is conserved. Finally our analysis forms the basis for a molecular analysis of metazoan phylogeny. Copyright © 2010 Elsevier GmbH. All rights reserved.

The chemical and hydrologic structure of Poas volcano, Costa Rica

USGS Publications Warehouse

Rowe, G.L.; Brantley, S.L.; Fernandez, J.F.; Borgia, A.

1995-01-01

Comparison of the chemical characteristics of spring and river water draining the flanks of Poas Volcano, Costa Rica indicates that acid chloride sulfate springs of the northwestern flank of the volcano are derived by leakage and mixing of acid brines formed in the summit hydrothermal system with dilute flank groundwater. Acid chloride sulfate waters of the Rio Agrio drainage basin on the northwestern flank are the only waters on Poas that are affected by leakage of acid brines from the summit hydrothermal system. Acid sulfate waters found on the northwestern flank are produced by the interaction of surface and shallow groundwater with dry and wet acid deposition of SO2 and H2SO4 aerosols, respectively. The acid deposition is caused by a plume of acid gases that is released by a shallow magma body located beneath the active crater of Poas. -from Authors

Geology of El Chichon volcano, Chiapas, Mexico

NASA Astrophysics Data System (ADS)

Duffield, Wendell A.; Tilling, Robert I.; Canul, Rene

1984-03-01

The (pre-1982) 850-m-high andesitic stratovolcano El Chichón, active during Pleistocene and Holocene time, is located in rugged, densely forested terrain in northcentral Chiapas, México. The nearest neighboring Holocene volcanoes are 275 km and 200 km to the southeast and northwest, respectively. El Chichón is built on Tertiary siltstone and sandstone, underlain by Cretaceous dolomitic limestone; a 4-km-deep bore hole near the east base of the volcano penetrated this limestone and continued 770 m into a sequence of Jurassic or Cretaceous evaporitic anhydrite and halite. The basement rocks are folded into generally northwest-trending anticlines and synclines. El Chichón is built over a small dome-like structure superposed on a syncline, and this structure may reflect cumulative deformation related to growth of a crustal magma reservoir beneath the volcano. The cone of El Chichón consists almost entirely of pyroclastic rocks. The pre-1982 cone is marked by a 1200-m-diameter (explosion?) crater on the southwest flank and a 1600-m-diameter crater apparently of similar origin at the summit, a lava dome partly fills each crater. The timing of cone and dome growth is poorly known. Field evidence indicates that the flank dome is older than the summit dome, and K-Ar ages from samples high on the cone suggest that the flank dome is older than about 276,000 years. At least three pyroclastic eruptions have occurred during the past 1250 radiocarbon years. Nearly all of the pyroclastic and dome rocks are moderately to highly porphyritic andesite, with plagioclase, hornblende and clinopyroxene the most common phenocrysts. Geologists who mapped El Chichón in 1980 and 1981 warned that the volcano posed a substantial hazard to the surrounding region. This warning was proven to be prophetic by violent eruptions that occurred in March and April of 1982. These eruptions blasted away nearly all of the summit dome, blanketed the surrounding region with tephra, and sent pyroclastic flows down radial drainages on the flanks of the cone; about 0.3 km 3 of material (density of all products normalized to 2.6 g cm -3) was erupted. More debris entered the stratosphere than from any other volcanic eruption within at least the past two decades. Halite and a calcium sulfate mineral (anhydrite?) recovered from the stratospheric cloud, and anhydrite as a common accessory mineral in 1982 juvenile erupted products may reflect contamination of El Chichón magma by the evaporite sequence revealed by drilling.

Distinct sources of particles near the cusp and the dusk flank of the magnetosphere

NASA Astrophysics Data System (ADS)

Escoubet, C. P.; Grison, B.; Berchem, J.; Trattner, K. J.; Lavraud, B.; Pitout, F.; Soucek, J.; Richard, R. L.; Laakso, H. E.; Masson, A.; Dunlop, M.; Dandouras, I. S.; Rème, H.; Fazakerley, A. N.; Daly, P. W.

2015-12-01

At the magnetopause, the location of the magnetic reconnection sites depends on the orientation of the interplanetary magnetic field (IMF) in the solar wind: on the dayside magnetosphere for an IMF southward, on the lobes for an IMF northward and on the flanks for an IMF in the East-West direction. Since most of observations of reconnection events have sampled a limited region of space simultaneously it is still not yet know if the reconnection line is extended over large regions of the magnetosphere or if is patchy and made of many reconnection lines. We report a Cluster crossing on 5 January 2002 near the exterior cusp on the southern dusk side where we observe multiple sources of reconnection/injections. The IMF was mainly azimuthal (IMF-By around -5 nT), the solar wind speed lower than usual around 280 km/s with the density of order 5 cm-3. The four Cluster spacecraft had an elongated configuration near the magnetopause. C4 was the first spacecraft to enter the cusp around 19:52:04 UT, followed by C2 at 19:52:35 UT, C1 at 19:54:24 UT and C3 at 20:13:15 UT. C4 and C1 observed two ion energy dispersions at 20:10 UT and 20:40 UT and C3 at 20:35 UT and 21:15 UT. Using the time of flight technique on the upgoing and downgoing ions, which leads to energy dispersions, we obtain distances of the ion sources between 14 and 20 RE from the spacecraft. The slope of the ion energy dispersions confirmed these distances. Using Tsyganenko model, we find that these sources are located on the dusk flank, past the terminator. The first injection by C3 is seen at approximately the same time as the 2nd injection on C1 but their sources at the magnetopause were separated by more than 7 RE. This would imply that two distinct sources were active at the same time on the dusk flank of the magnetosphere. In addition, a flow reversal was observed at the magnetopause on C4 which would be an indication that reconnection is also taking place near the exterior cusp quasi-simultaneously. A three-dimensional global magnetohydrodynamic (MHD) simulation will be used to determine the global topology of the magnetic field during the event.

Geology of El Chichon volcano, Chiapas, Mexico

USGS Publications Warehouse

Duffield, W.A.; Tilling, R.I.; Canul, R.

1984-01-01

The (pre-1982) 850-m-high andesitic stratovolcano El Chicho??n, active during Pleistocene and Holocene time, is located in rugged, densely forested terrain in northcentral Chiapas, Me??xico. The nearest neighboring Holocene volcanoes are 275 km and 200 km to the southeast and northwest, respectively. El Chicho??n is built on Tertiary siltstone and sandstone, underlain by Cretaceous dolomitic limestone; a 4-km-deep bore hole near the east base of the volcano penetrated this limestone and continued 770 m into a sequence of Jurassic or Cretaceous evaporitic anhydrite and halite. The basement rocks are folded into generally northwest-trending anticlines and synclines. El Chicho??n is built over a small dome-like structure superposed on a syncline, and this structure may reflect cumulative deformation related to growth of a crustal magma reservoir beneath the volcano. The cone of El Chicho??n consists almost entirely of pyroclastic rocks. The pre-1982 cone is marked by a 1200-m-diameter (explosion?) crater on the southwest flank and a 1600-m-diameter crater apparently of similar origin at the summit, a lava dome partly fills each crater. The timing of cone and dome growth is poorly known. Field evidence indicates that the flank dome is older than the summit dome, and K-Ar ages from samples high on the cone suggest that the flank dome is older than about 276,000 years. At least three pyroclastic eruptions have occurred during the past 1250 radiocarbon years. Nearly all of the pyroclastic and dome rocks are moderately to highly porphyritic andesite, with plagioclase, hornblende and clinopyroxene the most common phenocrysts. Geologists who mapped El Chicho??n in 1980 and 1981 warned that the volcano posed a substantial hazard to the surrounding region. This warning was proven to be prophetic by violent eruptions that occurred in March and April of 1982. These eruptions blasted away nearly all of the summit dome, blanketed the surrounding region with tephra, and sent pyroclastic flows down radial drainages on the flanks of the cone; about 0.3 km3 of material (density of all products normalized to 2.6 g cm-3) was erupted. More debris entered the stratosphere than from any other volcanic eruption within at least the past two decades. Halite and a calcium sulfate mineral (anhydrite?) recovered from the stratospheric cloud, and anhydrite as a common accessory mineral in 1982 juvenile erupted products may reflect contamination of El Chicho??n magma by the evaporite sequence revealed by drilling. ?? 1984.

The A.D. 1835 eruption of Volcán Cosigüina, Nicaragua: A guide for assessing local volcanic hazards

USGS Publications Warehouse

Scott, William E.; Gardner, Cynthia A.; Devoli, Graziella; Alvarez, Antonio

2006-01-01

The January 1835 eruption of Volcán Cosigüina in northwestern Nicaragua was one of the largest and most explosive in Central America since Spanish colonization. We report on the results of reconnaissance stratigraphic studies and laboratory work aimed at better defining the distribution and character of deposits emplaced by the eruption as a means of developing a preliminary hazards assessment for future eruptions. On the lower flanks of the volcano, a basal tephra-fall deposit comprises either ash and fine lithic lapilli or, locally, dacitic pumice. An overlying tephra-fall deposit forms an extensive blanket of brown to gray andesitic scoria that is 35–60 cm thick at 5–10 km from the summit-caldera rim, except southwest of the volcano, where it is considerably thinner. The scoria fall produced the most voluminous deposit of the eruption and underlies pyroclastic-surge and -flow deposits that chiefly comprise gray andesitic scoria. In northern and southeastern sectors of the volcano, these flowage deposits form broad fans and valley fills that locally reach the Gulf of Fonseca. An arcuate ridge 2 km west of the caldera rim and a low ridge east of the caldera deflected pyroclastic flows northward and southeastward. Pyroclastic flows did not reach the lower west and southwest flanks, which instead received thick, fine-grained, accretionary-lapilli–rich ashfall deposits that probably derived chiefly from ash clouds elutriated from pyroclastic flows. We estimate the total bulk volume of erupted deposits to be ∼6 km3. Following the eruption, lahars inundated large portions of the lower flanks, and erosion of deposits and creation of new channels triggered rapid alluviation. Pre-1835 eruptions are poorly dated; however, scoria-fall, pyroclastic-flow, and lahar deposits record a penultimate eruption of smaller magnitude than that of 1835. It occurred a few centuries earlier—perhaps in the fifteenth century. An undated sequence of thick tephra-fall deposits on the west flank of the volcano records tens of eruptions, some of which were greater in magnitude than that of 1835. Weathering evidence suggests this sequence is at least several thousand years old. The wide extent of pyroclastic flows and thick tephra fall during 1835, the greater magnitude of some previous Holocene eruptions, and the location of Cosigüina on a peninsula limit the options to reduce risk during future unrest and eruption.

Can magma-injection and groundwater forces cause massive landslides on Hawaiian volcanoes?

USGS Publications Warehouse

Iverson, R.M.

1995-01-01

Landslides with volumes exceeding 1000 km3 have occurred on the flanks of Hawaiian volcanoes. Because the flanks typically slope seaward no more than 12??, the mechanics of slope failure are problematic. Limit-equilibrium analyses of wedge-shaped slices of the volcano flanks show that magma injection at prospective headscarps might trigger the landslides, but only under very restrictive conditions. Additional calculations show that groundwater head gradients associated with topographically induced flow and sea-level change are less likely to be important. Thus a simple, quantitative explanation for failure of Hawaiian volcano flanks remains elusive, and more complex scenarios may merit investigation. -from Author

Wear evaluation of flank in burins of high speed steel modified with titanium ions

NASA Astrophysics Data System (ADS)

E Caballero, J.; V-Niño, E. D.

2017-12-01

This report shows the results obtained researching the flank wearing resistance performed by the high-speed steel (HSS) burins without any surface treatment (reference substrate) and others with surface treatment based on Titanium ions. The flank wearing was carried out by means of an industrial process by chip removal with repetitive tests of dry finished turning of AISI/SAE 1045 steel bars. The useful service life of the burins was evaluated according to ISO 3685:1993, and it was found that the burins treated with Titanium ions showed an increase in the flank wearing resistance with respect to the ones used as reference.

Evidence for heterogeneous (and possibly transient) geothermal flux beneath the Ross-Amundsen ice divide of the West Antarctic ice sheet

NASA Astrophysics Data System (ADS)

Blankenship, D. D.; Danque, H. A.; Quartini, E.; Young, D. A.

2012-12-01

It is well established that the geological framework for the evolution of the marine-based West Antarctic ice sheet (WAIS) is the Cretaceous through Cenozoic rifting of the underlying lithosphere. The southern flank of this rift along the Whitmore Mountains underlies the upper reaches of the Ross Sea catchment of the WAIS and has been identified as a site of active subglacial volcanism. Interestingly, the northern flank of this rift represented by the upward doming of the Marie Byrd Land volcanic province has not yet been associated with active subglacial volcanism. Similarly, it is not known whether the heterogeneity of geothermal flux associated with these existing and potential rift flank volcanic provinces extends across the floor of the rift between the rift flanks. Here we present geophysical evidence for heterogeneous geothermal flux associated with active subglacial volcanism along the northern rift flank adjacent to Marie Byrd Land where it intersects the ice divide for the Ross and Amundsen Sea sectors for the WAIS. We further evaluate the evidence for the continuity of heterogeneous geothermal flux along this ice divide and across the rift floor between the two flanks of the West Antarctic rift system.

Alternative site of implantation affects tumor malignancy and metastatic potential in mice: its comparison to the flank model.

PubMed

Speroni, Lucia; Bustuoabad, Victoria de Los Angeles; Gasparri, Julieta; Chiaramoni, Nadia Silvia; Taira, María Cristina; Ruggiero, Raúl Alejandro; Alonso, Silvia Del Valle

2009-02-01

MC-C fibrosarcoma and B16F0 melanoma tumors were implanted intradermally in the dorsal region of the foot of mice. Tumor progression was compared to standard implantation in the flank. Although foot tumors only reached 13% (MC-C) and 25% (B16F0) of the mean volume of flank tumors, a more malignant phenotype in terms of histology and survival rate was observed in this type of tumors. Moreover, lung metastases were only detected in hosts bearing foot tumors, in contrast to MC-C and B16F0 populations with tumors growing in the flank. In addition, cellular influx and local immune reaction were higher in the dorsal region of the foot. According to our results, the dermis of the flank allows excessive tumor growth due to its low reactivity. Thus, differences in innate and adaptive immune effectors between the evaluated tumor microenvironments would account for the differences in tumor malignancy. Due to its striking differences with the standard flank inoculation, the tumor implantation model herein introduced could be a valuable tool to study the metastatic potential of different cell lines and the microenvironment components affecting tumor growth.

Personal history of keratinocyte carcinoma is associated with reduced risk of death from invasive melanoma in men.

PubMed

Song, Fengju; Chen, Steven T; Li, Xin; Han, Jiali

2018-05-01

Previous studies have found an increased risk for invasive cutaneous melanoma (CM) among those with a history of keratinocyte carcinoma (KC). The aim of this study was to evaluate the risk of CM death after KC. The study was based on the Health Professionals Follow-up Study. A Cox proportional hazards model was used to examine the hazard ratio (HR) of death due to CM associated with personal history of KC among the entire study population (primary analysis) and among participants with invasive CM (secondary analysis), respectively. We documented a total of 908 participants with invasive CM over a total of 0.7 million person-years of follow-up. Among all participants, the risk for development of either lethal or nonlethal invasive CM increased for those with a history of KC. The risk for death due to melanoma based on KC history was not significantly increased, with an HR of 1.53 (95% confidence interval, 0.95-2.46). In the case-only analysis, those with a history of KC had a significantly lower risk for death due to melanoma than those with no such history (HR, 0.60; 95% confidence interval, 0.35-0.94). Because the population covered by the Health Professionals Follow-up Study consists exclusively of male health professionals, the results of this study may not be extended to the entire population. Personal history of KC is associated with a decreased risk for melanoma-specific death among male patients with invasive CM. Copyright © 2018 American Academy of Dermatology, Inc. Published by Elsevier Inc. All rights reserved.

Effect of Saw Palmetto Supplements on Androgen-Sensitive LNCaP Human Prostate Cancer Cell Number and Syrian Hamster Flank Organ Growth

PubMed Central

Opoku-Acheampong, Alexander B.; Penugonda, Kavitha; Lindshield, Brian L.

2016-01-01

Saw palmetto supplements (SPS) are commonly consumed by men with prostate cancer. We investigated whether SPS fatty acids and phytosterols concentrations determine their growth-inhibitory action in androgen-sensitive LNCaP cells and hamster flank organs. High long-chain fatty acids-low phytosterols (HLLP) SPS ≥ 750 nM with testosterone significantly increased and ≥500 nM with dihydrotestosterone significantly decreased LNCaP cell number. High long-chain fatty acids-high phytosterols (HLHP) SPS ≥ 500 nM with dihydrotestosterone and high medium-chain fatty acids-low phytosterols (HMLP) SPS ≥ 750 nM or with androgens significantly decreased LNCaP cell number (n = 3; p < 0.05). Five- to six-week-old, castrated male Syrian hamsters were randomized to control (n = 4), HLLP, HLHP, and HMLP SPS (n = 6) groups. Testosterone or dihydrotestosterone was applied topically daily for 21 days to the right flank organ; the left flank organ was treated with ethanol and served as the control. Thirty minutes later, SPS or ethanol was applied to each flank organ in treatment and control groups, respectively. SPS treatments caused a notable but nonsignificant reduction in the difference between left and right flank organ growth in testosterone-treated SPS groups compared to the control. The same level of inhibition was not seen in dihydrotestosterone-treated SPS groups (p < 0.05). Results may suggest that SPS inhibit 5α-reductase thereby preventing hamster flank organ growth. PMID:27272436

Effect of Saw Palmetto Supplements on Androgen-Sensitive LNCaP Human Prostate Cancer Cell Number and Syrian Hamster Flank Organ Growth.

PubMed

Opoku-Acheampong, Alexander B; Penugonda, Kavitha; Lindshield, Brian L

2016-01-01

Saw palmetto supplements (SPS) are commonly consumed by men with prostate cancer. We investigated whether SPS fatty acids and phytosterols concentrations determine their growth-inhibitory action in androgen-sensitive LNCaP cells and hamster flank organs. High long-chain fatty acids-low phytosterols (HLLP) SPS ≥ 750 nM with testosterone significantly increased and ≥500 nM with dihydrotestosterone significantly decreased LNCaP cell number. High long-chain fatty acids-high phytosterols (HLHP) SPS ≥ 500 nM with dihydrotestosterone and high medium-chain fatty acids-low phytosterols (HMLP) SPS ≥ 750 nM or with androgens significantly decreased LNCaP cell number (n = 3; p < 0.05). Five- to six-week-old, castrated male Syrian hamsters were randomized to control (n = 4), HLLP, HLHP, and HMLP SPS (n = 6) groups. Testosterone or dihydrotestosterone was applied topically daily for 21 days to the right flank organ; the left flank organ was treated with ethanol and served as the control. Thirty minutes later, SPS or ethanol was applied to each flank organ in treatment and control groups, respectively. SPS treatments caused a notable but nonsignificant reduction in the difference between left and right flank organ growth in testosterone-treated SPS groups compared to the control. The same level of inhibition was not seen in dihydrotestosterone-treated SPS groups (p < 0.05). Results may suggest that SPS inhibit 5α-reductase thereby preventing hamster flank organ growth.

Experimental Evaluation and Optimization of Flank Wear During Turning of AISI 4340 Steel with Coated Carbide Inserts Using Different Cutting Fluids

NASA Astrophysics Data System (ADS)

Lawal, S. A.; Choudhury, I. A.; Nukman, Y.

2015-01-01

The understanding of cutting fluids performance in turning process is very important in order to improve the efficiency of the process. This efficiency can be determined based on certain process parameters such as flank wear, cutting forces developed, temperature developed at the tool chip interface, surface roughness on the work piece, etc. In this study, the objective is to determine the influence of cutting fluids on flank wear during turning of AISI 4340 with coated carbide inserts. The performances of three types of cutting fluids were compared using Taguchi experimental method. The results show that palm kernel oil based cutting fluids performed better than the other two cutting fluids in reducing flank wear. Mathematical models for cutting parameters such as cutting speed, feed rate, depth of cut and cutting fluids were obtained from regression analysis using MINITAB 14 software to predict flank wear. Experiments were conducted based on the optimized values to validate the regression equations for flank wear and 5.82 % error was obtained. The optimal cutting parameters for the flank wear using S/N ratio were 160 m/min of cutting speed (level 1), 0.18 mm/rev of feed (level 1), 1.75 mm of depth of cut (level 2) and 2.97 mm2/s palm kernel oil based cutting fluid (level 3). ANOVA shows cutting speed of 85.36 %; and feed rate 4.81 %) as significant factors.

Leakage of active crater lake brine through the north flank at Rincon de la Vieja volcano, northwest Costa Rica, and implications for crater collapse

USGS Publications Warehouse

Kempter, K.A.; Rowe, G.L.

2000-01-01

The Active Crater at Rincon de la Vieja volcano, Costa Rica, reaches an elevation of 1750 m and contains a warm, hyper-acidic crater lake that probably formed soon after the eruption of the Rio Blanco tephra deposit approximately 3500 years before present. The Active Crater is buttressed by volcanic ridges and older craters on all sides except the north, which dips steeply toward the Caribbean coastal plains. Acidic, above-ambient-temperature streams are found along the Active Crater's north flank at elevations between 800 and 1000 m. A geochemical survey of thermal and non-thermal waters at Rincon de la Vieja was done in 1989 to determine whether hyper-acidic fluids are leaking from the Active Crater through the north flank, affecting the composition of north-flank streams. Results of the water-chemistry survey reveal that three distinct thermal waters are found on the flanks of Rincon de la Vieja volcano: acid chloride-sulfate (ACS), acid sulfate (AS), and neutral chloride (NC) waters. The most extreme ACS water was collected from the crater lake that fills the Active Crater. Chemical analyses of the lake water reveal a hyper-acidic (pH ~ 0) chloride-sulfate brine with elevated concentrations of calcium, magnesium, aluminum, iron, manganese, copper, zinc, fluorine, and boron. The composition of the brine reflects the combined effects of magmatic degassing from a shallow magma body beneath the Active Crater, dissolution of andesitic volcanic rock, and evaporative concentration of dissolved constituents at above-ambient temperatures. Similar cation and anion enrichments are found in the above-ambient-temperature streams draining the north flank of the Active Crater. The pH of north-flank thermal waters range from 3.6 to 4.1 and chloride:sulfate ratios (1.2-1.4) that are a factor of two greater than that of the lake brine (0.60). The waters have an ACS composition that is quite different from the AS and NC thermal waters that occur along the southern flank of Rincon de la Vieja. The distribution of thermal water types at Rincon de la Vieja strongly indicates that formation of the north-flank ACS waters is not due to mixing of shallow, steam-heated AS water with deep-seated NC water. More likely, hyper-acidic brines formed in the Active Crater area are migrating through permeable zones in the volcanic strata that make up the Active Crater's north flank. Dissolution and shallow subsurface alteration of north-flank volcanoclastic material by interaction with acidic lake brine, particularly in the more permeable tephra units, could weaken the already oversteepened north flank of the Active Crater. Sector collapse of the Active Crater, with or without a volcanic eruption, represents a potential threat to human lives, property, and ecosystems at Rincon de la Vieja volcano.

Surgical management of haemangiopericytoma involving the biceps femoris muscle in four dogs.

PubMed

Connery, N A; Bellenger, C R

2002-11-01

Four dogs with haemangiopericytoma of the subcutaneous tissue overlying and infiltrating the biceps femoris muscle were successfully managed using complete resection of the involved muscle with 2 to 3 cm skin margins. Postoperatively, no local recurrence was noted in any of the dogs in a follow-up period of four to 33 months (mean 22 months). Wound dehiscence, attributed to increased tension and inadequate exercise restriction, occurred in two of the four cases. Closure of the large cutaneous deficit in the craniolateral thigh and stifle was achieved by rotation of a flank-fold skin flap in one case. Strict exercise restriction and the use of a Robert Jones dressing may prevent muscle suture disruption. These measures should enable primary wound healing in the region to progress without complication.

Interannual Variation of Sea Level in the South Atlantic Based on Satellite Altimetry

NASA Astrophysics Data System (ADS)

Grodsky, S. A.; Carton, J. A.

2006-07-01

13 years of altimeter month ly sea level ar e used to explore interannual variability of the South Atlantic. The strongest v ariability outside the eastern and western boundaries is conf ined to a relatively narrow zonally oriented band b etw een 35°S and 25°S, the Agulhas eddy corridor. On th eir way across th e South Atlantic th e Agulh as eddies g ain energy on the southern flank of the eddy corridor via baro tropic conversions by deceler ating the South Atlan tic Curren t. On interannual time scales the sea level in the corridor fluctu ates out of phase in the w est and east r evealing noticeab le v ariations of 10 cm amp litude at 4 to 5 year periods.

Space Radar Image of Kilauea Volcano, Hawaii

NASA Technical Reports Server (NTRS)

1994-01-01

This is a deformation map of the south flank of Kilauea volcano on the big island of Hawaii, centered at 19.5 degrees north latitude and 155.25 degrees west longitude. The map was created by combining interferometric radar data -- that is data acquired on different passes of the space shuttle which are then overlayed to obtain elevation information -- acquired by the Spaceborne Imaging Radar-C/X-band Synthetic Aperture Radar during its first flight in April 1994 and its second flight in October 1994. The area shown is approximately 40 kilometers by 80 kilometers (25 miles by 50 miles). North is toward the upper left of the image. The colors indicate the displacement of the surface in the direction that the radar instrument was pointed (toward the right of the image) in the six months between images. The analysis of ground movement is preliminary, but appears consistent with the motions detected by the Global Positioning System ground receivers that have been used over the past five years. The south flank of the Kilauea volcano is among the most rapidly deforming terrains on Earth. Several regions show motions over the six-month time period. Most obvious is at the base of Hilina Pali, where 10 centimeters (4 inches) or more of crustal deformation can be seen in a concentrated area near the coastline. On a more localized scale, the currently active Pu'u O'o summit also shows about 10 centimeters (4 inches) of change near the vent area. Finally, there are indications of additional movement along the upper southwest rift zone, just below the Kilauea caldera in the image. Deformation of the south flank is believed to be the result of movements along faults deep beneath the surface of the volcano, as well as injections of magma, or molten rock, into the volcano's 'plumbing' system. Detection of ground motions from space has proven to be a unique capability of imaging radar technology. Scientists hope to use deformation data acquired by SIR-C/X-SAR and future imaging radar missions to help in better understanding the processes responsible for volcanic eruptions and earthquakes. Spaceborne Imaging Radar-C and X-band Synthetic Aperture Radar (SIR-C/X-SAR) is part of NASA's Mission to Planet Earth. The radars illuminate Earth with microwaves, allowing detailed observations at any time, regardless of weather or sunlight conditions. SIR-C/X-SAR uses three microwave wavelengths: L-band (24 cm), C-band (6 cm) and X-band (3 cm). The multi-frequency data will be used by the international scientific community to better understand the global environment and how it is changing. The SIR-C/X-SAR data, complemented by aircraft and ground studies, will give scientists clearer insights into those environmental changes which are caused by nature and those changes which are induced by human activity. SIR-C was developed by NASA's Jet Propulsion Laboratory. X-SAR was developed by the Dornier and Alenia Spazio companies for the German space agency, Deutsche Agentur fuer Raumfahrtangelegenheiten (DARA), and the Italian space agency, Agenzia Spaziale Italiana (ASI), with the Deutsche Forschungsanstalt fuer Luft und Raumfahrt e.V.(DLR), the major partner in science, operations and data processing of X-SAR.

Sickle cell disease: reference values and interhemispheric differences of nonimaging transcranial Doppler blood flow parameters.

PubMed

Arkuszewski, M; Krejza, J; Chen, R; Kwiatkowski, J L; Ichord, R; Zimmerman, R; Ohene-Frempong, K; Desiderio, L; Melhem, E R

2011-09-01

TCD screening is widely used to identify children with SCD at high risk of stroke. Those with high mean flow velocities in major brain arteries have increased risk of stroke. Thus, our aim was to establish reference values of interhemispheric differences and ratios of blood flow Doppler parameters in the tICA, MCA, and ACA as determined by conventional TCD in children with sickle cell anemia. Reference limits of blood flow parameters were established on the basis of a consecutive cohort of 56 children (mean age, 100 ± 40 months; range, 29-180 months; 30 females) free of neurologic deficits and intracranial stenosis detectable by MRA, with blood flow velocities <170 cm/s by conventional TCD. Reference limits were estimated by using tolerance intervals, within which are included with a probability of .90 of all possible data values from 95% of a population. Average peak systolic velocities were significantly higher in the right hemisphere in the MCA and ACA (185 ± 28 cm/s versus 179 ± 27 and 152 ± 30 cm/s versus 143 ± 34 cm/s respectively). Reference limits for left-to-right differences in the mean flow velocities were the following: -43 to 33 cm/s for the MCA; -49 to 38 cm/s for the ACA, and -38 to 34 cm/s for the tICA, respectively. Respective reference limits for left-to-right velocity ratios were the following: 0.72 to 1.25 cm/s for the MCA; 0.62 to 1.39 cm/s for the ACA, and 0.69 to 1.27 cm/s for the tICA. Flow velocities in major arteries were inversely related to age and Hct or Hgb. The study provides reference intervals of TCD flow velocities and their interhemispheric differences and ratios that may be helpful in identification of intracranial arterial stenosis in children with SCD undergoing sonographic screening for stroke prevention.

Heart rate variability during sleep following the practice of cyclic meditation and supine rest.

PubMed

Patra, Sanjib; Telles, Shirley

2010-06-01

Day time activities are known to influence the sleep on the following night. Cyclic meditation (CM) has recurring cycles. Previously, the low frequency (LF) power and the ratio between low frequency and high frequency (LF/HF ratio) of the heart rate variability (HRV) decreased during and after CM but not after a comparable period of supine rest (SR). In the present study, on thirty male volunteers, CM was practiced twice in the day and after this the HRV was recorded (1) while awake and (2) during 6 h of sleep (based on EEG, EMG and EGG recordings). This was similarly recorded for the night's sleep following the day time practice of SR. Participants were randomly assigned to the two sessions and all of them practiced both CM and SR on different days. During the night following day time CM practice there were the following changes; a decrease in heart rate, LF power (n.u.), LF/HF ratio, and an increase in the number of pairs of Normal to Normal RR intervals differing by more than 50 ms divided by total number of all NN intervals (pNN50) (P < 0.05, in all cases, comparing sleep following CM compared with sleep following SR). No change was seen on the night following SR. Hence yoga practice during the day appears to shift sympatho-vagal balance in favor of parasympathetic dominance during sleep on the following night.

Calcaneal traction pin placement simplified: a cadaveric study.

PubMed

Kwon, John Y; Ellington, J Kent; Marsland, Daniel; Gupta, Sanjeev

2011-06-01

The tibial neurovascular bundle and sural nerve are at risk with errant pin placement during transcalcaneal pin placement. The purpose of this study was to determine a relative safe zone using a single osseous landmark to establish a technique applicable in the presence of trauma. We describe the neural anatomy anatomically and radiographically, giving surgeons a reliable and relatively safe technique for transcalcaneal pin placement. Twenty-four cadavers were dissected for the major medial neurovascular structures and the sural nerve. The closest distance from the neurovascular structures to the posterior inferior calcaneus was measured. The mean distance from the posterior inferior calcaneus to the closest major medial neurovascular structure was 3.4 cm (SD ± 0.36; range, 2.6 to 4.1 cm). The mean distance to the sural nerve was 3.4 cm (SD ± 0.54; range, 2.3 to 4.6 cm). According to the 95% confidence intervals, a relative safe zone of 3.1 cm as a radius from the posterior inferior calcaneus was determined. A relatively safe zone of 3.1 cm based on 95% confidence intervals as described as a radius from the posterior inferior calcaneus can be used for transcalcaneal pin placement in most cases without injury to the medial neurovascular bundle or sural nerve. However anatomic variation may result in the neurovascular bundle being within this zone. We describe a surgical technique for reliable placement of a transcalcaneal pin within this relative safe zone and a safe distance from the closest neurovascular structure.

A comparison of force fields and calculation methods for vibration intervals of isotopic H3(+) molecules

NASA Astrophysics Data System (ADS)

Carney, G. D.; Adler-Golden, S. M.; Lesseski, D. C.

1986-04-01

This paper reports (1) improved values for low-lying vibration intervals of H3(+), H2D(+), D2H(+), and D3(+) calculated using the variational method and Simons-Parr-Finlan (1973) representations of the Carney-Porter (1976) and Dykstra-Swope (1979) ab initio H3(+) potential energy surfaces, (2) quartic normal coordinate force fields for isotopic H3(+) molecules, (3) comparisons of variational and second-order perturbation theory, and (4) convergence properties of the Lai-Hagstrom internal coordinate vibrational Hamiltonian. Standard deviations between experimental and ab initio fundamental vibration intervals of H3(+), H2D(+), D2H(+), and D3(+) for these potential surfaces are 6.9 (Carney-Porter) and 1.2/cm (Dykstra-Swope). The standard deviations between perturbation theory and exact variational fundamentals are 5 and 10/cm for the respective surfaces. The internal coordinate Hamiltonian is found to be less efficient than the previously employed 't' coordinate Hamiltonian for these molecules, except in the case of H2D(+).

Balloon borne in-situ detection of OH in the stratosphere from 37 to 23 km

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stimpfle, R.M.; Lapson, L.B., Wennberg, P.O.; Anderson, J.G.

1989-12-01

The OH number density in the stratosphere has been measured over the altitude interval of 37 to 23 km at midday via balloon-borne gondola launched from Palestine, Texas on July 6, 1988. OH radicals are detected with a laser induced fluorescence instrument employing a 17 kHz repetition rate copper vapor laser pumped dye laser optically coupled to an enclosed flow, in-situ sampling chamber. OH abundances ranged from 88 {plus minus} 31 pptv (1.1 {plus minus} 0.4 {times} 10{sup 7} molec cm{sup {minus}3}) in the 36 to 35 km interval to 0.9 {plus minus} 0.8 pptv (8.7 {plus minus} 7.7 {times}10{supmore » 5} molec cm{sup {minus}3}) in the 24 to 23 km interval. The stated uncertainty ({plus minus} 1{sigma}) includes that from both measurement precision and accuracy. Simultaneous detection of ozone and water vapor densities was carried out with separate on-board instruments.« less

Demonstration of periodic nanostructure formation with less ablation by double-pulse laser irradiation on titanium

DOE Office of Scientific and Technical Information (OSTI.GOV)

Furukawa, Yuki; Graduate School of Science, Kyoto University, Kitashirakawa, Sakyo, Kyoto 606-8502; Advanced Research Center for Beam Science, Institute for Chemical Research, Kyoto University, Gokasho, Uji, Kyoto 611-0011

By pairing femtosecond laser pulses (duration ∼40 fs and central wavelength ∼810 nm) at an appropriate time interval, a laser-induced periodic surface structure (LIPSS) is formed with much less ablation than one formed with a single pulse. On a titanium plate, a pair of laser pulses with fluences of 70 and 140 mJ/cm{sup 2} and a rather large time interval (>10 ps) creates a LIPSS with an interspace of 600 nm, the same as that formed by a single pulse of 210 mJ/cm{sup 2}, while the double pulse ablates only 4 nm, a quarter of the ablation depth of a single pulse.

Analysis of complex repeat sequences within the spinal muscular atrophy (SMA) candidate region in 5q13

DOE Office of Scientific and Technical Information (OSTI.GOV)

Davies, K.E.; Morrison, K.E.; Daniels, R.I.

1994-09-01

We previously reported that the 400 kb interval flanked the polymorphic loci D5S435 and D5S557 contains blocks of a chromosome 5 specific repeat. This interval also defines the SMA candidate region by genetic analysis of recombinant families. A YAC contig of 2-3 Mb encompassing this area has been constructed and a 5.5 kb conserved fragment, isolated from a YAC end clone within the above interval, was used to obtain cDNAs from both fetal and adult brain libraries. We describe the identification of cDNAs with stretches of high DNA sequence homology to exons of {beta} glucuronidase on human chromosome 7. Themore » cDNAs map both to the candidate region and to an area of 5p using FISH and deletion hybrid analysis. Hybridization to bacteriophage and cosmid clones from the YACs localizes the {beta} glucuronidase related sequences within the 400 kb region of the YAC contig. The cDNAs show a polymorphic pattern on hybridization to genomic BamH1 fragments in the size range of 10-250 kb. Further analysis using YAC fragmentation vectors is being used to determine how these {beta} glucuronidase related cDNAs are distributed within 5q13. Dinucleotide repeats within the region are being investigated to determine linkage disequilibrium with the disease locus.« less

Earthquakes of Loihi submarine volcano and the Hawaiian hot spot.

USGS Publications Warehouse

Klein, F.W.

1982-01-01

Loihi is an active submarine volcano located 35km S of the island of Hawaii and may eventually grow to be the next and S most island in the Hawaiian chain. The Hawaiian Volcano Observatory recorded two major earthquake swarms located there in 1971-1972 and 1975 which were probably associated with submarine eruptions or intrusions. The swarms were located very close to Loihi's bathymetric summit, except for earthquakes during the second stage of the 1971-1972 swarm, which occurred well onto Loihi's SW flank. The flank earthquakes appear to have been triggered by the preceding activity and possible rifting along Loihi's long axis, similar to the rift-flank relationship at Kilauea volcano. Other changes accompanied the shift in locations from Loihi's summit to its flank, including a shift from burst to continuous seismicity, a rise in maximum magnitude, a change from small earthquake clusters to a larger elongated zone, a drop in b value, and a presumed shift from concentrated volcanic stresses to a more diffuse tectonic stress on Loihi's flank. - Author

A simple football injury leading to a grade 4 renal trauma.

PubMed

Fanning, Deirdre Mary; Forde, James C; Mohan, Ponnusamy

2012-03-08

This case highlights the need for cautious management and serial regular examination of trauma patients. A 22-year-old Caucasian male presented to the emergency department 4 h following an injury sustained during football training. He complained of the immediate onset of severe left upper quadrant and left flank pain. He subsequently developed frank haematuria. On initial review, he was haemodynamically stable. CT of the abdomen and pelvis showed a grade 4 renal trauma. Over the following 36 h, he remained haemodynamically stable. On serial abdominal examinations however, he developed a rigid abdomen and was noted to have a haemoglobin drop. Interval CT scan showed a progression of his injury and the presence of a haemoperitoneum. An emergency laparotomy was performed resulting in a left nephrectomy. He made an uneventful recovery.

Use of synthetic sonic logs derived from seismic data in interpretation of stratigraphic variation in cretaceous carbonates of North field area, Qatar

DOE Office of Scientific and Technical Information (OSTI.GOV)

Aves, H.S.; Tappmeyer, D.M.

This study uses geologic and synthetic sonic sections to evaluate the hydrocarbon potential of the Lower and middle Cretaceous Thamama Group carbonates of the Mishrif, Nahr, Umr, Shuaiba, and Kharaib Formations in the North Field, Qatar. The North field area, a regional high throughout Lower and middle Cretaceous time, is document by depositional thinning and by higher energy carbonate facies development. Oil and gas accumulations are found on the crestal portions of this paleohigh in structural/stratigraphic traps. Three factors affect the interval velocities on both a regional and local basis. These are (1) variation of carbonate facies-higher energy wackestone/packstone andmore » possibly grainstones flanked by predominantly mudstones, (2) secondary porosity developed near the top of unconformity surfaces, and (3) the existence of hydrocarbons in the reservoir. Many local lateral and vertical variations in interval velocities were noted on the synthetic sonic sections that would have otherwise been undetected, such as areas of tight or porous reservoir development, permeability barriers, and subtle faulting. In these studied formations, there are many examples of low interval velocity zones that are known to contain hydrocarbons whereas equivalent higher interval velocity zones on the seismic sections at other well site locations do not contain hydrocarbons. In many places, these variations are of sufficient magnitude to be mapped as intraformational permeability barriers. These variations were useful in explaining the occurrence of different oil-water and gas-water contacts within the same formation that could not be explained solely on structural criteria.« less

Dense Pyroclastic Flows of the 16 -17 August 2006 Eruption of Tungurahua Volcano, Ecuador

NASA Astrophysics Data System (ADS)

Hall, M. L.; Mothes, P. A.; Ramon, P.; Arellano, S.; Barba, D.; Palacios, P.

2007-05-01

The 16-17 August 2006 eruption of Tungurahua volcano in central Ecuador was preceded by 7 years of threatening activity and finally a VEI=2 eruption on 14-15 July 2006. The larger August eruption witnessed tens of pyroclastic flows that descended 17 different channels up to 8.5 km to the volcano's base on the NW, N, W, and SW sides. Tungurahua (5023m) is a steep-sided, low SiO2 andesitic volcano with 2600 to 3200m of relief. The initial, small nuee ardentes began around 1700hr (local time), the larger flows occurred between 2147hr and 0100hr (17 Aug.), and a total of 31 events were indicated by seismic signals. The deposits of three distinct flow cycles are recognized at the NW base of the cone. On the Los Pajaros depositional fan, deposits of flows 1 and 2 are widespread laterally (<600m) and have low-aspect morphologies with low snouts and without levees. Their outer surfaces are covered with accessory > juvenile clasts that mainly range from 15 to 25cm in diameter, conversely their interiors are comprised of 40-42% clasts of 1-25cm size and a matrix (58-60%) of sand-size grains. The earlier flow 1 was accompanied by an ash cloud surge that leveled, but did not scorch, all trees, brush, even metal antenna posts, leaving a 1-10cm thick sandy ash layer upon flow 1's deposit. On the fan as well as in gullies on the upper flanks, flow 3 deposits form long narrow lobes with 1-2m high frontal snouts that are followed by empty flow channels, 5-15m wide, bounded by parallel levees 1-1.5m high. Within these channels subsequent flow lobes are found as remnant pulses. Unlike flows 1 and 2, flow 3 lobes are covered with 0.5-3m cauliflower-shaped, slightly vesiculated bombs that are rarely abraded; the deposit's interior has a 45% sandy matrix. During the climatic eruptive phase continuous lava fountaining, 500-700m high, and crater spilling likely fed a continual stream of fragmented lava onto the cone's upper steep flanks, from which dense pyroclastic mass flows were initiated by gravity. Flows 1 and 2 were more fluidized (due to entrained air and fines), faster, and had wider lateral extents. Flow 3 was poorly fluidized, highly channelized, and behaved more like an inertial granular flow that formed as a continuous avalanche stream that separated into consecutive pulses along the runout channel.

Chronic migraine prevalence, disability, and sociodemographic factors: results from the American Migraine Prevalence and Prevention Study.

PubMed

Buse, Dawn C; Manack, Aubrey N; Fanning, Kristina M; Serrano, Daniel; Reed, Michael L; Turkel, Catherine C; Lipton, Richard B

2012-01-01

To estimate the prevalence and distribution of chronic migraine (CM) in the US population and compare the age- and sex-specific profiles of headache-related disability in persons with CM and episodic migraine. Global estimates of CM prevalence using various definitions typically range from 1.4% to 2.2%, but the influence of sociodemographic factors has not been completely characterized. The American Migraine Prevalence and Prevention Study mailed surveys to a sample of 120,000 US households selected to represent the US population. Data on headache frequency, symptoms, sociodemographics, and headache-related disability (using the Migraine Disability Assessment Scale) were obtained. Modified Silberstein-Lipton criteria were used to classify CM (meeting International Classification of Headache Disorders, second edition, criteria for migraine with a headache frequency of ≥15 days over the preceding 3 months). Surveys were returned by 162,756 individuals aged ≥12 years; 19,189 individuals (11.79%) met International Classification of Headache Disorders, second edition, criteria for migraine (17.27% of females; 5.72% of males), and 0.91% met criteria for CM (1.29% of females; 0.48% of males). Relative to 12 to 17 year olds, the age- and sex-specific prevalence for CM peaked in the 40s at 1.89% (prevalence ratio 4.57; 95% confidence interval 3.13-6.67) for females and 0.79% (prevalence ratio 3.35; 95% confidence interval 1.99-5.63) for males. In univariate and adjusted models, CM prevalence was inversely related to annual household income. Lower income groups had higher rates of CM. Individuals with CM had greater headache-related disability than those with episodic migraine and were more likely to be in the highest Migraine Disability Assessment Scale grade (37.96% vs. 9.50%, respectively). Headache-related disability was highest among females with CM compared with males. CM represented 7.68% of migraine cases overall, and the proportion generally increased with age. In the US population, the prevalence of CM was nearly 1%. In adjusted models, CM prevalence was highest among females, in mid-life, and in households with the lowest annual income. Severe headache-related disability was more common among persons with CM and most common among females with CM. © 2012 American Headache Society.

Discovery and information-theoretic characterization of transcription factor binding sites that act cooperatively.

PubMed

Clifford, Jacob; Adami, Christoph

2015-09-02

Transcription factor binding to the surface of DNA regulatory regions is one of the primary causes of regulating gene expression levels. A probabilistic approach to model protein-DNA interactions at the sequence level is through position weight matrices (PWMs) that estimate the joint probability of a DNA binding site sequence by assuming positional independence within the DNA sequence. Here we construct conditional PWMs that depend on the motif signatures in the flanking DNA sequence, by conditioning known binding site loci on the presence or absence of additional binding sites in the flanking sequence of each site's locus. Pooling known sites with similar flanking sequence patterns allows for the estimation of the conditional distribution function over the binding site sequences. We apply our model to the Dorsal transcription factor binding sites active in patterning the Dorsal-Ventral axis of Drosophila development. We find that those binding sites that cooperate with nearby Twist sites on average contain about 0.5 bits of information about the presence of Twist transcription factor binding sites in the flanking sequence. We also find that Dorsal binding site detectors conditioned on flanking sequence information make better predictions about what is a Dorsal site relative to background DNA than detection without information about flanking sequence features.

Identification of Genomic Insertion and Flanking Sequence of G2-EPSPS and GAT Transgenes in Soybean Using Whole Genome Sequencing Method.

PubMed

Guo, Bingfu; Guo, Yong; Hong, Huilong; Qiu, Li-Juan

2016-01-01

Molecular characterization of sequence flanking exogenous fragment insertion is essential for safety assessment and labeling of genetically modified organism (GMO). In this study, the T-DNA insertion sites and flanking sequences were identified in two newly developed transgenic glyphosate-tolerant soybeans GE-J16 and ZH10-6 based on whole genome sequencing (WGS) method. More than 22.4 Gb sequence data (∼21 × coverage) for each line was generated on Illumina HiSeq 2500 platform. The junction reads mapped to boundaries of T-DNA and flanking sequences in these two events were identified by comparing all sequencing reads with soybean reference genome and sequence of transgenic vector. The putative insertion loci and flanking sequences were further confirmed by PCR amplification, Sanger sequencing, and co-segregation analysis. All these analyses supported that exogenous T-DNA fragments were integrated in positions of Chr19: 50543767-50543792 and Chr17: 7980527-7980541 in these two transgenic lines. Identification of genomic insertion sites of G2-EPSPS and GAT transgenes will facilitate the utilization of their glyphosate-tolerant traits in soybean breeding program. These results also demonstrated that WGS was a cost-effective and rapid method for identifying sites of T-DNA insertions and flanking sequences in soybean.

Activity Enhancement of G-Quadruplex/Hemin DNAzyme by Flanking d(CCC).

PubMed

Chang, Tianjun; Gong, Hongmei; Ding, Pi; Liu, Xiangjun; Li, Weiguo; Bing, Tao; Cao, Zehui; Shangguan, Dihua

2016-03-14

G-quadruplex (G4)/hemin DNAzymes have been extensively applied in bioanalysis and molecular devices. However, their catalytic activity is still much lower than that of proteinous enzymes. The G4/hemin DNAzyme activity is correlated with the G4 conformations and the solution conditions. However, little is known about the effect of the flanking sequences on the activity, though they are important parts of G4s. Here, we report sequences containing d(CCC), flanked on both ends of the G4-core sequences remarkably enhance their DNAzyme activity. By using circular dichroism and UV-visible spectroscopy, the d(CCC) flanking sequences were demonstrated to improve the hemin binding affinity to G4s instead of increasing the parallel G4 formation, which might explain the enhanced DNAzyme activity. Meanwhile, the increased hemin binding ability promoted the degradation of hemin within the DNAzyme by H2O2. Furthermore, the DNAzyme with d(CCC) flanking sequences showed strong tolerance to pH value changes, which makes it more suitable for applications requiring wide pH conditions. The results highlight the influence of the flanking sequences on the DNAzyme activity and provide insightful information for the design of highly active DNAzymes. © 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Basis for changes in the auxin-sensitivity of Avena sativa (oat) leaf-sheath pulvini during the gravitropic response

NASA Technical Reports Server (NTRS)

Kim, D.; Kaufman, P. B.

1995-01-01

During the gravitropic response, auxin-sensitivity of the lower flanks of leaf-sheath pulvini of Avena sativa (oat) is at least 1000-fold higher than those of the upper flanks and non-gravistimulated pulvini. When the pulvini are treated with 1 mM Ca2+, a 10-fold increase in auxin-sensitivity of the pulvini is observed. Related to this difference in auxin-sensitivity, in vitro activation of the vanadate-sensitive H(-)-ATPase by IAA was observed. Results show that the activation of the H(+)-ATPase by IAA is probably mediated by soluble protein factors and that the H(+)-ATPase prepared from the lower flanks is activated by IAA with a 1000-fold higher auxin-sensitivity as compared with that from the upper flanks of the graviresponding pulvini. Ammonium sulfate fractionation experiments show that these soluble protein factors are in the 30 to 60% fraction. Auxin-binding assays reveal that lower flanks contain more high-affinity soluble auxin-binding sites (kD; on the order of 10(-9) M) and less low-affinity soluble auxin-binding sites (kD; on the order of 10(-6) M) than upper flanks. It is concluded that differential auxin-sensitivity of graviresponding oat-shoot pulvini is achieved by the modulation of affinities of auxin-binding sites in upper and lower flanks of the pulvini, that Ca2+ is involved in such modulation, and that one of the probable cellular functions of these auxin binding sites is the activation of the proton pump on the plasma membranes.

Human T-cell leukemia virus type 1 Tax requires direct access to DNA for recruitment of CREB binding protein to the viral promoter.

PubMed

Lenzmeier, B A; Giebler, H A; Nyborg, J K

1998-02-01

Efficient human T-cell leukemia virus type 1 (HTLV-1) replication and viral gene expression are dependent upon the virally encoded oncoprotein Tax. To activate HTLV-1 transcription, Tax interacts with the cellular DNA binding protein cyclic AMP-responsive element binding protein (CREB) and recruits the coactivator CREB binding protein (CBP), forming a nucleoprotein complex on the three viral cyclic AMP-responsive elements (CREs) in the HTLV-1 promoter. Short stretches of dG-dC-rich (GC-rich) DNA, immediately flanking each of the viral CREs, are essential for Tax recruitment of CBP in vitro and Tax transactivation in vivo. Although the importance of the viral CRE-flanking sequences is well established, several studies have failed to identify an interaction between Tax and the DNA. The mechanistic role of the viral CRE-flanking sequences has therefore remained enigmatic. In this study, we used high resolution methidiumpropyl-EDTA iron(II) footprinting to show that Tax extended the CREB footprint into the GC-rich DNA flanking sequences of the viral CRE. The Tax-CREB footprint was enhanced but not extended by the KIX domain of CBP, suggesting that the coactivator increased the stability of the nucleoprotein complex. Conversely, the footprint pattern of CREB on a cellular CRE lacking GC-rich flanking sequences did not change in the presence of Tax or Tax plus KIX. The minor-groove DNA binding drug chromomycin A3 bound to the GC-rich flanking sequences and inhibited the association of Tax and the Tax-CBP complex without affecting CREB binding. Tax specifically cross-linked to the viral CRE in the 5'-flanking sequence, and this cross-link was blocked by chromomycin A3. Together, these data support a model where Tax interacts directly with both CREB and the minor-groove viral CRE-flanking sequences to form a high-affinity binding site for the recruitment of CBP to the HTLV-1 promoter.

[Studies of marker screening efficiency and corresponding influencing factors in QTL composite interval mapping].

PubMed

Gao, Yong-Ming; Wan, Ping

2002-06-01

Screening markers efficiently is the foundation of mapping QTLs by composite interval mapping. Main and interaction markers distinguished, besides using background control for genetic variation, could also be used to construct intervals of two-way searching for mapping QTLs with epistasis, which can save a lot of calculation time. Therefore, the efficiency of marker screening would affect power and precision of QTL mapping. A doubled haploid population with 200 individuals and 5 chromosomes was constructed, with 50 markers evenly distributed at 10 cM space. Among a total of 6 QTLs, one was placed on chromosome I, two linked on chromosome II, and the other three linked on chromosome IV. QTL setting included additive effects and epistatic effects of additive x additive, the corresponding QTL interaction effects were set if data were collected under multiple environments. The heritability was assumed to be 0.5 if no special declaration. The power of marker screening by stepwise regression, forward regression, and three methods for random effect prediction, e.g. best linear unbiased prediction (BLUP), linear unbiased prediction (LUP) and adjusted unbiased prediction (AUP), was studied and compared through 100 Monte Carlo simulations. The results indicated that the marker screening power by stepwise regression at 0.1, 0.05 and 0.01 significant level changed from 2% to 68%, the power changed from 2% to 72% by forward regression. The larger the QTL effects, the higher the marker screening power. While the power of marker screening by three random effect prediction was very low, the maximum was only 13%. That suggested that regression methods were much better than those by using the approaches of random effect prediction to identify efficient markers flanking QTLs, and forward selection method was more simple and efficient. The results of simulation study on heritability showed that heightening of both general heritability and interaction heritability of genotype x environments could enhance marker screening power, the former had a greater influence on QTLs with larger main and/or epistatic effects, while the later on QTLs with small main and/or epistatic effects. The simulation of 100 times was also conducted to study the influence of different marker number and density on marker screening power. It is indicated that the marker screening power would decrease if there were too many markers, especially with high density in a mapping population, which suggested that a mapping population with definite individuals could only hold limited markers. According to the simulation study, the reasonable number of markers should not be more than individuals. The simulation study of marker screening under multiple environments showed high total power of marker screening. In order to relieve the problem that marker screening power restricted the efficiency of QTL mapping, markers identified in multiple environments could be used to construct two search intervals.

The Final Phase of Drilling of the Hawaii Scientific Drilling Project

NASA Astrophysics Data System (ADS)

Stolper, E.; Depaolo, D.; Thomas, D.; Garcia, M.; Haskins, E.; Baker, M.

2008-12-01

The principal goal of the Hawaii Scientific Drilling Project (HSDP) was to core continuously deep into the flank of a Hawaiian volcano and to investigate the petrology, geochemisty, geochronology, magnetics, etc. of the recovered samples. Drilling in Hilo, on the island of Hawaii proceeded in three phases. A 1.06 km pilot hole was core-drilled in 1993; a second hole was core-drilled to 3,098 meters below sea level (mbsl) in 1999, then deepened in 2004-2007 to 3,509 mbsl. Although the final phase of drilling was at times technically challenging, core recovery was close to 100%. All rocks from the final phase of drilling were emplaced below sea level and are from the Mauna Kea volcano. On-site core logging identified 45 separate units (the 1999 phase of drilling yielded 345 units). Five lithologies were identified: pillows (~60%); pillow breccias (~10%); massive lavas (~12%); hyaloclastites (~17%); intrusives (~1%; these are mostly multiple thin (down to cm scale) fingers of magma with identical lithologies occurring over narrow depth intervals). The rocks are primarily tholeiitic, ranging from aphyric to highly olivine-phyric lavas (up to ~25% olivine phenocrysts), with considerable fresh glass and olivine; clays and zeolites are present throughout the core. Forty whole-rock samples were collected as a reference suite and sent to multiple investigators for study. Additionally, glass was collected at roughly 3 m intervals for electron microprobe analysis. Although continuous and consistent with the shallower rocks from the previous phase of coring, there are several noteworthy features of the deepest core: (1) Glasses from shallower portions of the core exhibited bimodal silica contents, a low SiO2 group (~48-50 wt.%) and a high SiO2 group (~50.5- 52 wt.%). Glasses from the last phase of drilling are essentially all in the high-silica group and are somewhat more evolved than the high-silica glasses from the shallower portion of the core (5.1-7.6 vs. 5.1-10.4 wt.% MgO). (2) The expected sequence of lithologies with depth in the core is subaerial lava flows, hyaloclastites (formed by debris flows carrying glass and lithic fragments from the shoreline down the submarine flanks of the volcano), and finally pillow lavas. This sequence was generally observed in the earlier phases of drilling, and it appeared that the deepest rocks from the 1999 phase of drilling were essentially all formed from pillow lavas (i.e., there were no more hyaloclastites). However, thick hyaloclastites reflecting long distance transport from the ancient shoreline reappear in the bottom ~100 m of the drill hole. Although it may be coincidence, pillow breccias occur in the shallower parts of the core from the final phase of drilling, but not in the deeper parts in which the hyaloclastites reappear. (3) Intrusive rocks make up a lower fraction (~1%) of samples from the final phase of coring than in the deeper parts of the section from the 1999 phase of drilling (3.8%). It had been suggested that intrusives might become more common the deeper the drilling, but this is not the case at depths down to 3.5 km. (4) There are three units classified as "massive" including one relatively thick (~40 m), featureless (no internal boundaries, no evidence of mixing or internal differentiation), moderately olivine-phyric basalt.

Microbial Breakdown of Organic Carbon in the Diverse Sediments of Guaymas Basin

NASA Astrophysics Data System (ADS)

Hoarfrost, A.; Snider, R.; Arnosti, C.

2015-12-01

Guaymas Basin is characterized by sediments under conditions ranging from hemipelagic to hydrothermal. This wide range in geochemical contexts results in diverse microbial communities that may have varying abilities to access organic matter. We can address these functional differences by comparing enzyme activities initializing the breakdown of organic matter across these sediment types; however, previous direct measurements of the extracellular hydrolysis of complex organic carbon in sediments are sparse. We measured this first step of heterotrophic processing of organic matter in sediments at 5-10cm and 55-60cm depth from a wide range of environmental settings in Guaymas Basin. Sediment sources included sulfidic seeps on the Sonora Margin, hemipelagic ridge flank sediments, and hydrothermically altered Sonora Margin sediments bordering a methane seep site. Hydrolysis of organic substrates varied by depth and by sediment source, but despite high energy potential and organic carbon load in sulfidic sediments, activity was not highest where hydrothermal influence was highest. These results suggest that heterotrophic breakdown of organic carbon in Guaymas Basin sediments may be sensitive to factors including varying composition of organic carbon available in different sediment types, or differences in microbial community capacities to access specific organic substrates.

Identifying Vasopressor and Inotrope Use for Health Services Research

PubMed Central

Fawzy, Ashraf; Bradford, Mark; Lindenauer, Peter K.

2016-01-01

Rationale: Identifying vasopressor and inotrope (vasopressor) use from administrative claims data may provide an important resource to study the epidemiology of shock. Objectives: Determine accuracy of identifying vasopressor use using International Classification of Disease, Ninth Revision, Clinical Modification (ICD-9-CM) coding. Methods: Using administrative data enriched with pharmacy billing files (Premier, Inc., Charlotte, NC), we identified two cohorts: adult patients admitted with a diagnosis of sepsis from 2010 to 2013 or pulmonary embolism (PE) from 2008 to 2011. Vasopressor administration was obtained using pharmacy billing files (dopamine, dobutamine, epinephrine, milrinone, norepinephrine, phenylephrine, vasopressin) and compared with ICD-9-CM procedure code for vasopressor administration (00.17). We estimated performance characteristics of the ICD-9-CM code and compared patients’ characteristics and mortality rates according to vasopressor identification method. Measurements and Main Results: Using either pharmacy data or the ICD-9-CM procedure code, 29% of 541,144 patients in the sepsis cohort and 5% of 81,588 patients in the PE cohort were identified as receiving a vasopressor. In the sepsis cohort, the ICD-9-CM procedure code had low sensitivity (9.4%; 95% confidence interval, 9.2–9.5), which increased over time. Results were similar in the PE cohort (sensitivity, 5.8%; 95% confidence interval, 5.1–6.6). The ICD-9-CM code exhibited high specificity in the sepsis (99.8%) and PE (100%) cohorts. However, patients identified as receiving vasopressors by ICD-9-CM code had significantly higher unadjusted in-hospital mortality, had more acute organ failures, and were more likely hospitalized in the Northeast and West. Conclusions: The ICD-9-CM procedure code for vasopressor administration has low sensitivity and selects for higher severity of illness in studies of shock. Temporal changes in sensitivity would likely make longitudinal shock surveillance using ICD-9-CM inaccurate. PMID:26653145

Time averaging and stratigraphic disorder of molluscan assemblages in the Holocene sediments in the NE Adriatic (Piran)

NASA Astrophysics Data System (ADS)

Tomasovych, Adam; Gallmetzer, Ivo; Haselmair, Alexandra; Kaufman, Darrell S.; Zuschin, Martin

2016-04-01

Stratigraphic changes in temporal resolution of fossil assemblages and the degree of their stratigraphic mixing in the Holocene deposits are of high importance in paleoecology, conservation paleobiology and paleoclimatology. However, few studies quantified downcore changes in time averaging and in stratigraphic disorder on the basis of dating of multiple shells occurring in individual stratigraphic layers. Here, we investigate downcore changes in frequency distribution of postmortem ages of the infaunal bivalve Gouldia minima in two, ~150 cm-thick piston cores (separated by more than 1 km) in the northern Adriatic Sea, close to the Slovenian city Piran at a depth of 24 m. We use radiocarbon-calibrated amino acid racemization to obtain postmortem ages of 564 shells, and quantify age-frequency distributions in 4-5 cm-thick stratigraphic intervals (with 20-30 specimens sampled per interval). Inter-quartile range for individual 4-5 cm-thick layers varies between 850 and 1,700 years, and range encompassing 95% of age data varies between 2,000 and 5,000 years in both cores. The uppermost sediments (20 cm) are age-homogenized and show that median age of shells is ~700-800 years. The interval between 20 and 90 cm shows a gradual increase in median age from ~2,000 to ~5,000 years, with maximum age ranging to ~8,000 years. However, the lowermost parts of both cores show a significant disorder, with median age of 3,100-3,300 years. This temporal disorder implies that many shells were displaced vertically by ~1 m. Absolute and proportional abundance of the bivalve Gouldia minima strongly increases towards the top of the both cores. We hypothesize that such increase in abundance, when coupled with depth-declining reworking, can explain stratigraphic disorder because numerically abundant young shells from the top of the core were more likely buried to larger sediment depths than less frequent shells at intermediate sediment depths.

Dissociation of binding and learning processes.

PubMed

Moeller, Birte; Frings, Christian

2017-11-01

A single encounter of a stimulus together with a response can result in a short-lived association between the stimulus and the response [sometimes called an event file, see Hommel, Müsseler, Aschersleben, & Prinz, (2001) Behavioral and Brain Sciences, 24, 910-926]. The repetition of stimulus-response pairings typically results in longer lasting learning effects indicating stimulus-response associations (e.g., Logan & Etherton, (1994) Journal of Experimental Psychology: Learning, Memory, and Cognition, 20, 1022-1050]. An important question is whether or not what has been described as stimulus-response binding in action control research is actually identical with an early stage of incidental learning (e.g., binding might be seen as single-trial learning). Here, we present evidence that short-lived binding effects can be distinguished from learning of longer lasting stimulus-response associations. In two experiments, participants always responded to centrally presented target letters that were flanked by response irrelevant distractor letters. Experiment 1 varied whether distractors flanked targets on the horizontal or vertical axis. Binding effects were larger for a horizontal than for a vertical distractor-target configuration, while stimulus configuration did not influence incidental learning of longer lasting stimulus-response associations. In Experiment 2, the duration of the interval between response n - 1 and presentation of display n (500 ms vs. 2000 ms) had opposing influences on binding and learning effects. Both experiments indicate that modulating factors influence stimulus-response binding and incidental learning effects in different ways. We conclude that distinct underlying processes should be assumed for binding and incidental learning effects.

Manual lymphatic drainage and therapeutic ultrasound in liposuction and lipoabdominoplasty post-operative period.

PubMed

Masson, Igor F B; de Oliveira, Bruna D A; Machado, Aline Fernanda Perez; Farcic, Thiago Saikali; Júnior, Ivaldo Esteves; Baldan, Cristiano Schiavinato

2014-01-01

Physiotherapy in the plastic surgery post-operative (PO) is essential to provide means for an adequate and fast recovery as it restores function through the use of physiotherapeutic procedures. The aim of the following study is to verify the effects of the association between the manual lymphatic drainage and the therapeutic ultrasound on pain, oedema and the tissue fibrosis in liposuction and lipoabdominoplasty PO. This is a clinical trial prospective. Eighteen women aged between 18 and 60 years participated in this study, in the late PO period following lipoabdominoplasty or liposuction in the abdomen, flanks and lower trunk, which showed tissue fibrosis of the flanks and abdomen regions. They were divided into two groups: Liposuction group and lipoabdominoplasty group. A total of twelve sessions of therapeutic ultrasound followed by the manual lymphatic drainage were performed. The patients were assessed with regard to pain, oedema and tissue fibrosis in different moments: Initial assessment, during assessment and final assessment through the application of the protocol of evaluation of cysts fibrosis levels. The test of equality for two proportions and the confidence interval test for mean to evaluate the distribution of variables. The significance level adopted for statistical tests was 5% (P < 0.05). There was a statistically significant reduction of pain, swelling and tissue fibrosis in both groups. the association between manual lymphatic drainage and the therapeutic ultrasound reduced the swelling and the tissue fibrosis and made pain disappear in liposuction and lipoabdominoplasty PO period.

Strain rate dependent calcite microfabric evolution at natural conditions

NASA Astrophysics Data System (ADS)

Rogowitz, Anna; Grasemann, Bernhard; Huet, Benjamin; Habler, Gerlinde

2014-05-01

Crystal plastic deformational behaviour of calcite has been the focus of many experimental studies. Different strain rates, pressure and temperature conditions have been addressed to investigate a wide range of deformation regimes. However, a direct comparison with natural fault rocks remains difficult because of extreme differences between experimental and natural strain rates. A flanking structure developed in almost pure calcite marble on Syros (Cyclades, Greece). Due to rotation of a planar feature (crack) a heterogeneous strain field in the surrounding area occurred resulting in different strain domains and the formation of the flanking structure. Assuming that deformation was active continuously during the development of the flanking structure, the different strain domains correspond to different strain-rate domains. The outcrop thus represents the final state of a natural experiment and gives us a great opportunity to get natural constraints on strain rate dependent deformation behaviour of calcite. Comparing the microfabrics in the 1 to 2.5 cm thick shear zone and the surrounding host rocks, which formed under the same metamorphic conditions but with different strain rates, is the central focus of this study. Due to the extreme variation in strain and strain rate, different microstructures and textures can be observed corresponding to different deformation mechanisms. With increasing strain rate we observe a change in dominant deformation mechanism from dislocation glide to dislocation creep and finally diffusion creep. Additionally, a change from subgrain rotation to bulging recrystallization can be observed in the dislocation creep regime. Crystallographic preferred orientations (CPO) and the grade of intracrystalline deformation were measured on a FEI Quanta 3D FEG instrument equipped with an EDAX Digiview IV EBSD camera. At all strain rates clear CPOs developed leading to the assumption that calcite preferentially deforms within the dislocation creep field. However, we can also find clear evidence for grain size sensitive deformation mechanisms at smaller grain sizes (3.6 μm) consistent with experimental observations and determined flaw laws. The results of this study are compared with experimental data, closing the gap between experimental and natural geological strain rates.

Geodetic evidence for en echelon dike emplacement and concurrent slow slip during the June 2007 intrusion and eruption at Kīlauea volcano, Hawaii

USGS Publications Warehouse

Montgomery-Brown, E. K.; Sinnett, D.K.; Poland, M.; Segall, P.; Orr, T.; Zebker, H.; Miklius, Asta

2010-01-01

A series of complex events at Kīlauea Volcano, Hawaii, 17 June to 19 June 2007, began with an intrusion in the upper east rift zone (ERZ) and culminated with a small eruption (1500 m3). Surface deformation due to the intrusion was recorded in unprecedented detail by Global Positioning System (GPS) and tilt networks as well as interferometric synthetic aperture radar (InSAR) data acquired by the ENVISAT and ALOS satellites. A joint nonlinear inversion of GPS, tilt, and InSAR data yields a deflationary source beneath the summit caldera and an ENE-striking uniform-opening dislocation with ~2 m opening, a dip of ∼80° to the south, and extending from the surface to ~2 km depth. This simple model reasonably fits the overall pattern of deformation but significantly misfits data near the western end of an inferred dike-like source. Three more complex dike models are tested that allow for distributed opening including (1) a dike that follows the surface trace of the active rift zone, (2) a dike that follows the symmetry axis of InSAR deformation, and (3) two en echelon dike segments beneath mapped surface cracks and newly formed steaming areas. The en echelon dike model best fits near-field GPS and tilt data. Maximum opening of 2.4 m occurred on the eastern segment beneath the eruptive vent. Although this model represents the best fit to the ERZ data, it still fails to explain data from a coastal tiltmeter and GPS sites on Kīlauea's southwestern flank. The southwest flank GPS sites and the coastal tiltmeter exhibit deformation consistent with observations of previous slow slip events beneath Kīlauea's south flank, but inconsistent with observations of previous intrusions. Slow slip events at Kīlauea and elsewhere are thought to occur in a transition zone between locked and stably sliding zones of a fault. An inversion including slip on a basal decollement improves fit to these data and suggests a maximum of ~15 cm of seaward fault motion, comparable to previous slow-slip events.

Effect of Periodic Burning on Soil Nitrogen Concentrations in Ponderosa Pine

Treesearch

W. W. Covington; S. S. Sackett

1986-01-01

To determine the effects of different burning intervals on soil N status in substands of sapling-, pole-, and sawtimber-sized ponderosa pine (Pinus ponderosa Laws.) we sampled plots burned at 1-, 2-, and 4-yr intervals by three strata at two depths (0-5 and 5-15 cm). Generally, NH4 +; and NO3 - concentrations were higher on plots repeatedly burned than on unburned...

Sedimentological and Stable Isotope Changes at the Messinian-Pliocene Boundary Along a West to East Mediterranean Transect.

NASA Astrophysics Data System (ADS)

Pierre, C.; Rouchy, J.; Blanc-Valleron, M.

2001-12-01

During Messinian times, the whole Mediterranean area was submitted to evaporitic conditions which ended by the "Lago-Mare" brackish episode before the reset of open marine conditions in the early Pliocene. These major paleoceanographic changes resulted from regional tectonic reorganizations and global climate changes at this critical time interval, both acting to modify drastically the physiography and the hydrological budget of the Mediterranean basins. There exist outcropping sections and a few deep-sea ODP cores which contain the complete and continuous sedimentary sequence of the Messinian-Pliocene boundary (MPB), making it possible to follow the paleoenvironmental changes at a high resolution scale. We compare here sedimentological and carbonate stable isotope records on three sections for which a high- resolution sampling was applied to the 2 meters thick interval including the MPB. In the Vera section from South Spain, there is no clear change in the carbonate content of the silty clay succession when crossing the MPB. The oxygen and carbon isotopic compositions of calcite both increase by 1 permil across a 40 cm-thick interval which corresponds to the Messinian-Pliocene transition. At ODP Site 968 from the eastern Levantine basin, there is an important sedimentary change between Messinian brown silty clays containing about 20 percent of carbonate and Pliocene gray nannofossil ooze which carbonate content averages 60 percent. Across this 10 cm-thick transitional interval, the oxygen and carbon isotopic compositions of bulk calcite both increase by 4.5 permil. In the Pissouri section from Cyprus, the uppermost Messinian reddish to brown marls with paleosoils are overlain by white Pliocene marls. The carbonate content increases from 20 percent to reach 60 percent across a 40 cm-thick transitional interval. Within this interval corresponding to the MPB, the oxygen and carbon isotopic compositions increase by 4 permil and 2 permil respectively. These results indicate that the MPB is recorded everywhere from W to E Mediterranean by significant and sharp increases in the oxygen and carbon isotopic compositions, which indicate that the early Pliocene marine flooding of the Mediterranean basins was a very abrupt event.

Low-accommodation detrital apron alongside a basement uplift, Pennsylvanian of Midcontinent North America

NASA Astrophysics Data System (ADS)

Joeckel, R. M.; Nicklen, B. L.; Carlson, M. P.

2007-04-01

The northern end of the 650-km-long Nemaha Uplift (Nebraska and Kansas, USA) is an important example of basin-margin sedimentation in the North American Midcontinent. An apron of coarse, basal Pennsylvanian arkosic clastic sediments (BPC) was deposited on the flanks of the uplift while marine cyclothems were encroaching from the east. Small-scale fining-upward intervals, many with demonstrably erosional bases, dominate the BPC and are interpreted as overridingly fluvial in origin. Weak paleosols, desiccation cracks, and reddened intervals in the BPC record episodic subaerial exposure. Multiple, burrowed horizons and heterolithic strata of probable tidal origin and rare marine fossils also indicate episodic marine influence. The BPC appear to have been deposited as a thin apron of coalesced, alluvial fans and fan deltas. Deposition of the BPC occurred during the waning of uplift and subsequent quiescence. The comparative thinness and large-scale packaging of the BPC are compatible with the controlling effects of relict relief, regional subsidence, and eustasy, rather than ongoing, major vertical displacements along active faults. A strong autocyclic influence on sedimentation is evidenced by stacked fining-upward intervals of poorly-sorted conglomerates, sandstones, and sandy mudstones. Correlations demonstrate that the accumulation of the BPC took place over more than seven major sea-level cycles, beginning in Cherokee Group times (middle Moscovian/middle Pennsylvanian) and ending only when the eroded uplift was inundated and buried by marine cyclothems. On the basis of local correlations with marine cyclothems, and using black phosphatic shales (so-called "core shales" of Heckel, P.H., 1986. Sea-level surve for Pennsylvanian eustatic marine transgressive-regressive depositional cycles along Midcontinent outcrop belt, North America: Geology 14, 330-334., Heckel, P.H., 1994. Evaluation of evidence for glacio-eustatic control over marine Pennsylvanian cyclothems in North America and correlation of possible tectonic effects. In: Dennison, J.M., Ettensohn, F.R. (Eds.), Tectonic and Eustatic Controls on Sedimentary Cycles, SEPM Concepts in Sedimentology and Paleontology No. 4, pp. 5-87) as marker beds, we speculate that the BPC exist in backstepping sequences and/or parasequences alongside the flanks of the Nemaha Uplift. The BPC are lithologically comparable to contemporaneous deposits alongside the Ancestral Rockies, Amarillo-Wichita Uplift, and other buried basement highs in North America. Nonetheless, the BPC are an order of magnitude thinner, are dominantly retrogradational, rather than progradational, and their occurrence was not associated with major displacements along basin-bounding faults. In this manner, the BPC are a useful example of low-accommodation, eustasy-dominated, coarse-grained terrigenous clastic deposition around an uplifted basement block.

Repeated stimulation, inter-stimulus interval and inter-electrode distance alters muscle contractile properties as measured by Tensiomyography

PubMed Central

Johnson, Mark I.; Francis, Peter

2018-01-01

Context The influence of methodological parameters on the measurement of muscle contractile properties using Tensiomyography (TMG) has not been published. Objective To investigate the; (1) reliability of stimulus amplitude needed to elicit maximum muscle displacement (Dm), (2) effect of changing inter-stimulus interval on Dm (using a fixed stimulus amplitude) and contraction time (Tc), (3) the effect of changing inter-electrode distance on Dm and Tc. Design Within subject, repeated measures. Participants 10 participants for each objective. Main outcome measures Dm and Tc of the rectus femoris, measured using TMG. Results The coefficient of variance (CV) and the intra-class correlation (ICC) of stimulus amplitude needed to elicit maximum Dm was 5.7% and 0.92 respectively. Dm was higher when using an inter-electrode distance of 7cm compared to 5cm [P = 0.03] and when using an inter-stimulus interval of 10s compared to 30s [P = 0.017]. Further analysis of inter-stimulus interval data, found that during 10 repeated stimuli Tc became faster after the 5th measure when compared to the second measure [P<0.05]. The 30s inter-stimulus interval produced the most stable Tc over 10 measures compared to 10s and 5s respectively. Conclusion Our data suggest that the stimulus amplitude producing maximum Dm of the rectus femoris is reliable. Inter-electrode distance and inter-stimulus interval can significantly influence Dm and/ or Tc. Our results support the use of a 30s inter-stimulus interval over 10s or 5s. Future studies should determine the influence of methodological parameters on muscle contractile properties in a range of muscles. PMID:29451885

Geochemistry of NE Atlantic non-rifting zones, Iceland and Jan Mayen

NASA Astrophysics Data System (ADS)

Tronnes, R. G.; Waight, T.

2005-12-01

The fertile components of the NE Atlantic mantle are sampled preferentially by alkaline basalts in the volcanic flank zones of Iceland and in the Jan Mayen and Vesteris seamount areas. Our data from primitive flank zone lavas from Iceland and Jan Mayen demonstrate a HIMU-affinity with enrichment of HFSE, U/Pb, Th/U and Nb/Th. In PM-normalized spider diagrams the least enriched samples have weakly positive Sr-anomalies, whereas the most enriched samples have negative Sr-anomalies. The entire sample suite shows negative Sr-Nd-isotope correlation, whereas the samples of each volcanic system or flank zone generally lack such a correlation. Our data confirm the anomalously high 87/86Sr of the Orafajokull volcanic system in the eastern flank zone. The results are consistent with existing data for other primitive flank zone basalts from Iceland and Jan Mayen. Common geochemical features linking alkaline flank zone basalts and high-degree tholeiitic melts include high 87/86Sr (and probably 176/177Hf) for a given 143/144Nd, negative delta-207Pb (except for Orafajokull) and positive delta-Nb. Alkaline flank zone basalts have generally higher 87/86Sr, 206/204Pb and 18/16O and lower 143/144Nd, 187/188Os and 3/4He than rift zone tholeiites. The different 18/16O ratios in flank and rift zone basalts are consistent with seafloor hydrothermal alteration of the upper and lower parts of recycled oceanic lithosphere, respectively. Olivine-melt fractionation may contribute to the difference. Indications of lower 187/188Os in alkaline basalts compared to nearby rift zone tholeiites could be caused by subduction zone loss of Re from the upper part of recycled slabs. The partial melting and volcanic sampling of the fertile mantle components under Iceland and the NE Atlantic is governed by the crustal structure and geometry of the Icelandic volcanic zones and the lateral deflection of the upwelling heterogeneous mantle source originating under central Iceland. Based on the pattern of V-shaped ridges along the Kolbeinsey ridge, the lateral mantle flow from central Iceland may well extend beyond Jan Mayen. The geochemical similarities between the enriched basalts of the Icelandic flank zones and Jan Mayen support this contention, although a minor separate plume under JM is a possibility.

The character of long-term eruptions: Inferences from episodes 50-53 of the Pu'u 'Ō'ō-Kūpaianaha eruption of Kīlauea volcano

USGS Publications Warehouse

Heliker, C.C.; Mangan, M.T.; Mattox, T.N.; Kauahikaua, J.P.; Helz, R.T.

1998-01-01

The Pu'u 'Ō'ō-Kūpaianaha eruption on the east rift zone of Kīlauea began in January 1983. The first 9 years of the eruption were divided between the Pu'u 'Ō'ō (1983–1986) and Kūpaianaha (1986–1992) vents, each characterized by regular, predictable patterns of activity that endured for years. In 1990 a series of pauses in the activity disturbed the equilibrium of the eruption, and in 1991, the output from Kūpaianaha steadily declined and a short-lived fissure eruption broke out between Kūpaianaha and Pu'u 'Ō'ō. In February 1992 the Kūpaianaha vent died, and, 10 days later, eruptive episode 50 began as a fissure opened on the uprift flank of the Pu'u 'Ō'ō cone. For the next year, the eruption was marked by instability as more vents opened on the flank of the cone and the activity was repeatedly interrupted by brief pauses in magma supply to the vents. Episodes 50–53 constructed a lava shield 60 m high and 1.3 km in diameter against the steep slope of the Pu'u 'Ō'ō cone. By 1993 the shield was pockmarked by collapse pits as vents and lava tubes downcut as much as 29 m through the thick deposit of scoria and spatter that veneered the cone. As the vents progressively lowered, the level of the Pu'u 'Ō'ō pond also dropped, demonstrating the hydraulic connection between the two. The downcutting helped to undermine the prominent Pu'u 'Ō'ō cone, which has diminished in size both by collapse, as a large pit crater formed over the conduit, and by burial of its flanks. Intervals of eruptive instability, such as that of 1991–1993, accelerate lateral expansion of the subaerial flow field both by producing widely spaced vents and by promoting surface flow activity as lava tubes collapse and become blocked during pauses.

Fine genetic mapping of the gene for nevoid basal cell carcinoma syndrome

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wicking, C.; Berkman, J.; Wainwright, B.

1994-08-01

Nevoid basal cell carcinoma syndrome (NBCCS, or Gorlin syndrome) is a cancer predisposition syndrome characterized by multiple basal cell carcinomas and diverse developmental defects. The gene responsible for NBCCS, which is most likely to be a tumor suppressor gene, has previously been mapped to 9q22.3-q31 in a 12-cM interval between the microsatellite marker loci D9S12.1 and D9S109. Combined multipoint and haplotype analyses of additional polymorphisms in this region in our collection of Australasian pedigrees have further refined the localization of the gene to between the markers D9S196 and D9S180, an interval reported to be approximately 2 cM. 27 refs., 4more » figs., 1 tab.« less

Inversion of Coeval Shear and Normal Stress of Piton de la Fournaise Flank Displacement

NASA Astrophysics Data System (ADS)

Cayol, V.; Tridon, M.; Froger, J. L.; Augier, A.; Bachelery, P.

2016-12-01

The April 2007 eruption of Piton de la Fournaise was the biggest volcano eruptive crisis of the 20th and 21st centuries. InSAR captured a large (1.4 m) co-eruptive seaward slip of the volcano's eastern flank, which continued for more than a year at a decreasing rate. Co-eruptive uplift and post-eruptive subsidence were also observed. While it is generally agreed that flank displacement is induced by fault slip, we investigate wether this flank displacement might have been induced by a sheared sill, as suggested by observations of sheared sills at Piton des Neiges. To test this hypothesis, we develop a new method to invert a quadrangular curved source submitted to co-eval pressure and shear stress changes. This method, based on boundary elements, is applied to co-eruptive and post-eruptive InSAR data. We find that co-eruptive displacement is explained by a 2 km by 2 km detachment fault, parallel to the flank and probably coincident with a lithological discontinuity. The fracture is shallow enough to induce the co-eval uplift characteristic of a detachment fold. We determine the co-eruptive overpressure is zero, which indicates that the fracture is not a sheared sill. This finding confirms a previous determination obtained using a decision tree based on ratios of maximum displacements. The determined shear stress change of 2 MPa is conistent with the eastern flank loaded by previously intruded rift dikes. Post-eruptive displacement is well explained by slip and closure of the same fracture but over a larger (5 km by 8 km). This displacements is consistent with relaxation and the co-eruptive flank displacement and causal link between both displacement is investigated.

Molecular analysis of the glucocerebrosidase gene locus

DOE Office of Scientific and Technical Information (OSTI.GOV)

Winfield, S.L.; Martin, B.M.; Fandino, A.

1994-09-01

Gaucher disease is due to a deficiency in the activity of the lysosomal enzyme glucocerebrosidase. Both the functional gene for this enzyme and a pseudogene are located in close proximity on chromosome 1q21. Analysis of the mutations present in patient samples has suggested interaction between the functional gene and the pseudogene in the origin of mutant genotypes. To investigate the involvement of regions flanking the functional gene and pseudogene in the origin of mutations found in Gaucher disease, a YAC clone containing DNA from this locus has been subcloned and characterized. The original YAC containing {approximately}360 kb was truncated withmore » the use of fragmentation plasmids to about 85 kb. A lambda library derived from this YAC was screened to obtain clones containing glucocerebrosidase sequences. PCR amplification was used to identify subclones containing 5{prime}, central, or 3{prime} sequences of the functional gene or of the pseudogene. Clones spanning the entire distance from the last exon of the functional gene to intron 1 of the pseudogene, the 5{prime} end of the functional gene and 16 kb of 5{prime} flanking region and approximately 15 kb of 3{prime} flanking region of the pseudogene were sequenced. Sequence data from 48 kb of intergenic and flanking regions of the glucocerebrosidase gene and its pseudogene has been generated. A large number of Alu sequences and several simple repeats have been found. Two of these repeats exhibit fragment length polymorphism. There is almost 100% homology between the 3{prime} flanking regions of the functional gene and the pseudogene, extending to about 4 kb past the termination codons. A much lower degree of homology is observed in the 5{prime} flanking region. Patient samples are currently being screened for polymorphisms in these flanking regions.« less

Assessing various Infrared (IR) microscopic imaging techniques for post-mortem interval evaluation of human skeletal remains.

PubMed

Woess, Claudia; Unterberger, Seraphin Hubert; Roider, Clemens; Ritsch-Marte, Monika; Pemberger, Nadin; Cemper-Kiesslich, Jan; Hatzer-Grubwieser, Petra; Parson, Walther; Pallua, Johannes Dominikus

2017-01-01

Due to the influence of many environmental processes, a precise determination of the post-mortem interval (PMI) of skeletal remains is known to be very complicated. Although methods for the investigation of the PMI exist, there still remains much room for improvement. In this study the applicability of infrared (IR) microscopic imaging techniques such as reflection-, ATR- and Raman- microscopic imaging for the estimation of the PMI of human skeletal remains was tested. PMI specific features were identified and visualized by overlaying IR imaging data with morphological tissue structures obtained using light microscopy to differentiate between forensic and archaeological bone samples. ATR and reflection spectra revealed that a more prominent peak at 1042 cm-1 (an indicator for bone mineralization) was observable in archeological bone material when compared with forensic samples. Moreover, in the case of the archaeological bone material, a reduction in the levels of phospholipids, proteins, nucleic acid sugars, complex carbohydrates as well as amorphous or fully hydrated sugars was detectable at (reciprocal wavelengths/energies) between 3000 cm-1 to 2800 cm-1. Raman spectra illustrated a similar picture with less ν2PO43-at 450 cm-1 and ν4PO43- from 590 cm-1 to 584 cm-1, amide III at 1272 cm-1 and protein CH2 deformation at 1446 cm-1 in archeological bone material/samples/sources. A semi-quantitative determination of various distributions of biomolecules by chemi-maps of reflection- and ATR- methods revealed that there were less carbohydrates and complex carbohydrates as well as amorphous or fully hydrated sugars in archaeological samples compared with forensic bone samples. Raman- microscopic imaging data showed a reduction in B-type carbonate and protein α-helices after a PMI of 3 years. The calculated mineral content ratio and the organic to mineral ratio displayed that the mineral content ratio increases, while the organic to mineral ratio decreases with time. Cluster-analyses of data from Raman microscopic imaging reconstructed histo-anatomical features in comparison to the light microscopic image and finally, by application of principal component analyses (PCA), it was possible to see a clear distinction between forensic and archaeological bone samples. Hence, the spectral characterization of inorganic and organic compounds by the afore mentioned techniques, followed by analyses such as multivariate imaging analysis (MIAs) and principal component analyses (PCA), appear to be suitable for the post mortem interval (PMI) estimation of human skeletal remains.

Assessing various Infrared (IR) microscopic imaging techniques for post-mortem interval evaluation of human skeletal remains

PubMed Central

Roider, Clemens; Ritsch-Marte, Monika; Pemberger, Nadin; Cemper-Kiesslich, Jan; Hatzer-Grubwieser, Petra; Parson, Walther; Pallua, Johannes Dominikus

2017-01-01

Due to the influence of many environmental processes, a precise determination of the post-mortem interval (PMI) of skeletal remains is known to be very complicated. Although methods for the investigation of the PMI exist, there still remains much room for improvement. In this study the applicability of infrared (IR) microscopic imaging techniques such as reflection-, ATR- and Raman- microscopic imaging for the estimation of the PMI of human skeletal remains was tested. PMI specific features were identified and visualized by overlaying IR imaging data with morphological tissue structures obtained using light microscopy to differentiate between forensic and archaeological bone samples. ATR and reflection spectra revealed that a more prominent peak at 1042 cm-1 (an indicator for bone mineralization) was observable in archeological bone material when compared with forensic samples. Moreover, in the case of the archaeological bone material, a reduction in the levels of phospholipids, proteins, nucleic acid sugars, complex carbohydrates as well as amorphous or fully hydrated sugars was detectable at (reciprocal wavelengths/energies) between 3000 cm-1 to 2800 cm-1. Raman spectra illustrated a similar picture with less ν2PO43−at 450 cm-1 and ν4PO43− from 590 cm-1 to 584 cm-1, amide III at 1272 cm-1 and protein CH2 deformation at 1446 cm-1 in archeological bone material/samples/sources. A semi-quantitative determination of various distributions of biomolecules by chemi-maps of reflection- and ATR- methods revealed that there were less carbohydrates and complex carbohydrates as well as amorphous or fully hydrated sugars in archaeological samples compared with forensic bone samples. Raman- microscopic imaging data showed a reduction in B-type carbonate and protein α-helices after a PMI of 3 years. The calculated mineral content ratio and the organic to mineral ratio displayed that the mineral content ratio increases, while the organic to mineral ratio decreases with time. Cluster-analyses of data from Raman microscopic imaging reconstructed histo-anatomical features in comparison to the light microscopic image and finally, by application of principal component analyses (PCA), it was possible to see a clear distinction between forensic and archaeological bone samples. Hence, the spectral characterization of inorganic and organic compounds by the afore mentioned techniques, followed by analyses such as multivariate imaging analysis (MIAs) and principal component analyses (PCA), appear to be suitable for the post mortem interval (PMI) estimation of human skeletal remains. PMID:28334006

The association between maternal hydronephrosis and acute flank pain during pregnancy: a prospective pilot-study.

PubMed

Farr, Alex; Ott, Johannes; Kueronya, Verena; Margreiter, Markus; Javadli, Elchin; Einig, Sabrina; Husslein, Peter W; Bancher-Todesca, Dagmar

2017-10-01

Maternal hydronephrosis may cause flank pain during pregnancy. We aimed to investigate the association between maternal hydronephrosis and flank pain intensity. From 2014 to 2015, all consecutive women with singleton pregnancies, who presented at our tertiary center due to acute flank pain, were prospectively evaluated by renal ultrasonography and pain questionnaires. A visual analogue scale was used to assess pain intensity. The study had 90% power to detect a significant correlation between hydronephrosis and flank pain (Spearman's test). A total of 51 consecutive women with left-sided (13.7%), right-sided (64.7%) or bilateral (21.6%) pain were enrolled. The mean gestational age of these women, who presented due to their pain, was 27.5 ± 6.8 weeks at the time of consultation. The mean VAS score was 7.6 ± 2.2. In 43/51 (84.3%) women, hydronephrosis was found on renal sonograms. No correlation was found between the grade of hydronephrosis and pain intensity (p = 0.466; r= -0.28). Women delivered at a mean gestational age of 38.1 ± 2.4 weeks and their infants had a mean birthweight of 3138 ± 677 g. Hydronephrosis is a common finding among pregnant women with acute flank pain. The grade of hydronephrosis does not affect pain intensity. This study suggests normal pregnancy outcomes in these women.

Flank vents and graben as indicators of Late Amazonian volcanotectonic activity on Olympus Mons

NASA Astrophysics Data System (ADS)

Peters, S. I.; Christensen, P. R.

2017-03-01

Previous studies have focused on large-scale features on Olympus Mons, such as its flank terraces, the summit caldera complex, and the basal escarpment and aureole deposits. Here we identify and characterize previously unrecognized and unmapped small scale features to help further understand the volcanotectonic evolution of this enormous volcano. Using Context Camera, High Resolution Imaging Science Experiment, Thermal Emission Imaging System, High Resolution Stereo Camera Digital Terrain Model, and Mars Orbiter Laser Altimeter data, we identified and characterized the morphology and distribution of 60 flank vents and 84 grabens on Olympus Mons. We find that effusive eruptions have dominated volcanic activity on Olympus Mons in the Late Amazonian. Explosive eruptions were rare, implying volatile-poor magmas and/or a lack of magma-water interactions during the Late Amazonian. The distribution of flank vents suggests dike propagation of hundreds of kilometers and shallow magma storage. Small grabens, not previously observed in lower-resolution data, occur primarily on the lower flanks of Olympus Mons and indicate late-stage extensional tectonism. Based on superposition relationships, we have concluded two stages of development for Olympus Mons during the Late Amazonian: (1) primarily effusive resurfacing and formation of flank vents followed by (2) waning effusive volcanism and graben formation and/or reactivation. This developmental sequence resembles that proposed for Ascraeus Mons and other large Martian shields, suggesting a similar geologic evolution for these volcanoes.

Multi-stage volcanic island flank collapses with coeval explosive caldera-forming eruptions.

PubMed

Hunt, James E; Cassidy, Michael; Talling, Peter J

2018-01-18

Volcanic flank collapses and explosive eruptions are among the largest and most destructive processes on Earth. Events at Mount St. Helens in May 1980 demonstrated how a relatively small (<5 km 3 ) flank collapse on a terrestrial volcano could immediately precede a devastating eruption. The lateral collapse of volcanic island flanks, such as in the Canary Islands, can be far larger (>300 km 3 ), but can also occur in complex multiple stages. Here, we show that multistage retrogressive landslides on Tenerife triggered explosive caldera-forming eruptions, including the Diego Hernandez, Guajara and Ucanca caldera eruptions. Geochemical analyses were performed on volcanic glasses recovered from marine sedimentary deposits, called turbidites, associated with each individual stage of each multistage landslide. These analyses indicate only the lattermost stages of subaerial flank failure contain materials originating from respective coeval explosive eruption, suggesting that initial more voluminous submarine stages of multi-stage flank collapse induce these aforementioned explosive eruption. Furthermore, there are extended time lags identified between the individual stages of multi-stage collapse, and thus an extended time lag between the initial submarine stages of failure and the onset of subsequent explosive eruption. This time lag succeeding landslide-generated static decompression has implications for the response of magmatic systems to un-roofing and poses a significant implication for ocean island volcanism and civil emergency planning.

Finite Element Analysis Of Influence Of Flank Wear Evolution On Forces In Orthogonal Cutting Of 42CrMo4 Steel

NASA Astrophysics Data System (ADS)

Madajewski, Marek; Nowakowski, Zbigniew

2017-01-01

This paper presents analysis of flank wear influence on forces in orthogonal turning of 42CrMo4 steel and evaluates capacity of finite element model to provide such force values. Data about magnitude of feed and cutting force were obtained from measurements with force tensiometer in experimental test as well as from finite element analysis of chip formation process in ABAQUS/Explicit software. For studies an insert with complex rake face was selected and flank wear was simulated by grinding operation on its flank face. The aim of grinding inset surface was to obtain even flat wear along cutting edge, which after the measurement could be modeled with CAD program and applied in FE analysis for selected range of wear width. By comparing both sets of force values as function of flank wear in given cutting conditions FEA model was validated and it was established that it can be applied to analyze other physical aspects of machining. Force analysis found that progression of wear causes increase in cutting force magnitude and steep boost to feed force magnitude. Analysis of Fc/Ff force ratio revealed that flank wear has significant impact on resultant force in orthogonal cutting and magnitude of this force components in cutting and feed direction. Surge in force values can result in transfer of substantial loads to machine-tool interface.

DNA/RNA Helicase Gene Mutations in a Form of Juvenile Amyotrophic Lateral Sclerosis (ALS4)

PubMed Central

Chen, Ying-Zhang; Bennett, Craig L.; Huynh, Huy M.; Blair, Ian P.; Puls, Imke; Irobi, Joy; Dierick, Ines; Abel, Annette; Kennerson, Marina L.; Rabin, Bruce A.; Nicholson, Garth A.; Auer-Grumbach, Michaela; Wagner, Klaus; De Jonghe, Peter; Griffin, John W.; Fischbeck, Kenneth H.; Timmerman, Vincent; Cornblath, David R.; Chance, Phillip F.

2004-01-01

Juvenile amyotrophic lateral sclerosis (ALS4) is a rare autosomal dominant form of juvenile amyotrophic lateral sclerosis (ALS) characterized by distal muscle weakness and atrophy, normal sensation, and pyramidal signs. Individuals affected with ALS4 usually have an onset of symptoms at age <25 years, a slow rate of progression, and a normal life span. The ALS4 locus maps to a 1.7-Mb interval on chromosome 9q34 flanked by D9S64 and D9S1198. To identify the molecular basis of ALS4, we tested 19 genes within the ALS4 interval and detected missense mutations (T3I, L389S, and R2136H) in the Senataxin gene (SETX). The SETX gene encodes a novel 302.8-kD protein. Although its function remains unknown, SETX contains a DNA/RNA helicase domain with strong homology to human RENT1 and IGHMBP2, two genes encoding proteins known to have roles in RNA processing. These observations of ALS4 suggest that mutations in SETX may cause neuronal degeneration through dysfunction of the helicase activity or other steps in RNA processing. PMID:15106121

Lava flow hazards-An impending threat at Miyakejima volcano, Japan

NASA Astrophysics Data System (ADS)

Cappello, Annalisa; Geshi, Nobuo; Neri, Marco; Del Negro, Ciro

2015-12-01

The majority of the historic eruptions recorded at Miyakejima volcano were fissure eruptions that occurred on the flanks of the volcano. During the last 1100 years, 17 fissure eruptions have been reported with a mean interval of about 76-78 years. In the last century, the mean interval between fissure eruptions decreased to 21-22 years, increasing significantly the threat of lava flow inundations to people and property. Here we quantify the lava flow hazards posed by effusive eruptions in Miyakejima by combining field data, numerical simulations and probability analysis. Our analysis is the first to assess both the spatiotemporal probability of vent opening, which highlights the areas most likely to host a new eruption, and the lava flow hazard, which shows the probabilities of lava-flow inundation in the next 50 years. Future eruptive vents are expected in the vicinity of the Hatchodaira caldera, radiating from the summit of the volcano toward the costs. Areas more likely to be threatened by lava flows are Ako and Kamitsuki villages, as well as Miike port and Miyakejima airport. Thus, our results can be useful for risk evaluation, investment decisions, and emergency response preparation.

A high-resolution map of the Grp1 locus on chromosome V of potato harbouring broad-spectrum resistance to the cyst nematode species Globodera pallida and Globodera rostochiensis.

PubMed

Finkers-Tomczak, Anna; Danan, Sarah; van Dijk, Thijs; Beyene, Amelework; Bouwman, Liesbeth; Overmars, Hein; van Eck, Herman; Goverse, Aska; Bakker, Jaap; Bakker, Erin

2009-06-01

The Grp1 locus confers broad-spectrum resistance to the potato cyst nematode species Globodera pallida and Globodera rostochiensis and is located in the GP21-GP179 interval on the short arm of chromosome V of potato. A high-resolution map has been developed using the diploid mapping population RHAM026, comprising 1,536 genotypes. The flanking markers GP21 and GP179 have been used to screen the 1,536 genotypes for recombination events. Interval mapping of the resistances to G. pallida Pa2 and G. rostochiensis Ro5 resulted in two nearly identical LOD graphs with the highest LOD score just north of marker TG432. Detailed analysis of the 44 recombinant genotypes showed that G. pallida and G. rostochiensis resistance could not be separated and map to the same location between marker SPUD838 and TG432. It is suggested that the quantitative resistance to both nematode species at the Grp1 locus is mediated by one or more tightly linked R genes that might belong to the NBS-LRR class.

Correlation of Mohawkian (Ordovician) K-bentonites in post-Black River rocks of Ohio, Kentucky, and Michigan

DOE Office of Scientific and Technical Information (OSTI.GOV)

Schumacher, G.A.; Carlton, R.W.; Bergstroem, S.M.

1992-01-01

One to 10 K-bentonites are recognized in the Curdsville and Logana Members of the Lexington Limestone of Kentucky and southwestern Ohio and in coeval strata in west-central and northwestern Ohio and southeastern Michigan. These beds occur in the Phragmodus undatus and Amorphognathus tyaerensis conodont zones and the Orthograptus ruedemanni and Climacograptus spiniferus graptolite zones. Individual beds range in thickness from 1 mm to 30 cm and occur 16 cm to 19 m above the base of the Lexington Limestone and equivalents. Seventy-five percent of the observed K-bentonites occur in three narrow stratigraphic intervals. Some K-bentonites are traceable over parts ofmore » Ohio but insufficient data from northern Kentucky and west-central Ohio complicate regional lithostratigraphic correlation. Conodont biostratigraphy suggests that each k-bentonite complex is correlative regionally. Most conodont species range throughout all, or most, of the study interval but the ranges of Belodina compressa, Polyplacognathus ramosus, and Amorphognathus tyaerensis show only minor overlap. Preliminary correlation suggests that the oldest K- bentonite complex occurs in the interval characterized by B. compressa, the second complex in the P. Ramosus interval, and the third complex in the A. tyaerensis interval. This study provides the basis for potential correlation with coeval K-bentonites in areas outside of the study area. Also it provides an enhanced understanding of the lithostratigraphy and conodont biofacies of this complex stratigraphic interval. The K-bentonite succession also adds information on the timing of the initiation of the Sebree Trough.« less

Topographic stress and catastrophic collapse of volcanic islands

NASA Astrophysics Data System (ADS)

Moon, S.; Perron, J. T.; Martel, S. J.

2017-12-01

Flank collapse of volcanic islands can devastate coastal environments and potentially induce tsunamis. Previous studies have suggested that factors such as volcanic eruption events, gravitational spreading, the reduction of material strength due to hydrothermal alteration, steep coastal cliffs, or sea level change may contribute to slope instability and induce catastrophic collapse of volcanic flanks. In this study, we examine the potential influence of three-dimensional topographic stress perturbations on flank collapses of volcanic islands. Using a three-dimensional boundary element model, we calculate subsurface stress fields for the Canary and Hawaiian islands to compare the effects of stratovolcano and shield volcano shapes on topographic stresses. Our model accounts for gravitational stresses from the actual shapes of volcanic islands, ambient stress in the underlying plate, and the influence of pore water pressure. We quantify the potential for slope failure of volcanic flanks using a combined model of three-dimensional topographic stress and slope stability. The results of our analysis show that subsurface stress fields vary substantially depending on the shapes of volcanoes, and can influence the size and spatial distribution of flank failures.

Urolithiasis presenting as right flank pain: a case report.

PubMed

Chung, Chadwick; Stern, Paula J; Dufton, John

2013-03-01

Urolithiasis refers to renal or ureteral calculi referred to in lay terminology as a kidney stone. Utolithiasis is a potential emergency often resulting in acute abdominal, low back, flank or groin pain. Chiropractors may encounter patients when they are in acute pain or after they have recovered from the acute phase and should be knowledgeable about the signs, symptoms, potential complications and appropriate recommendations for management. A 52 year old male with acute right flank pain presented to the emergency department. A ureteric calculus with associated hydronephrosis was identified and he was prescribed pain medications and discharged to pass the stone naturally. One day later, he returned to the emergency department with severe pain and was referred to urology. He was managed with a temporary ureteric stent and antibiotics. This case describes a patient with acute right flank and lower quadrant pain which was diagnosed as an obstructing ureteric calculus. Acute management and preventive strategies in patients with visceral pathology such as renal calculi must be considered in patients with severe back and flank pain as it can progress to hydronephrosis and kidney failure.

[Clinical study on patients with renal-cell carcinoma accompanied with Von Hippel-Lindau disease treated with radiofrequency ablation].

PubMed

Nao, Tomoya; Shimamoto, Tsutomu; Karashima, Takashi; Kamei, Maiko; Fukuhara, Hideo; Fukata, Satoshi; Satake, Hirofumi; Ashida, Shingo; Yamasaki, Ichiro; Kamata, Masayuki; Inoue, Keiji; Yamanishi, Tomoaki; Ogawa, Yasuhiro; Ito, Satoshi; Shuin, Taro

2014-09-01

We report 12 renal cell carcinomas in 6 patients with Von Hippel-Lindau (VHL) disease treated with radiofrequency ablation (RFA). The mean age of the patients was 46 (range 38-53) years (male : 4, female : 2). Computed tomography (CT)-guided transcutaneous RFA was performed under conscious sedation with local anesthetics. The mean size of the tumors was 2.4 (range 0.7-8.1) cm. Nine of the 12 tumors (75%) were locally well controlled. However, 3 tumors in 2 patients developed visceral metastases after RFA. While minimal flank pain, nausea, perinephritic hematoma and lumbago were observed, there was no major complication during or after the procedure. The therapy with CT-guided transcutaneous RFA is efficient and minimal invasive for renal cell carcinoma in patients with VHL, leading to preservation of renal function.

Identification of a key recombinant narrows the CADASIL gene region to 8 cM and argues against allelism of CADASIL and familial hemiplegic migraine

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dichgans, M.; Mayer, M.; Straube, A.

1996-02-15

This article reports on new information regarding the genetic mapping of the human CADASIL gene region. Previously, the gene had been mapped to human chromosome 19q12. Using the identification of a chromosomal crossover, the region has been refined to an 8-cM interval. 11 refs., 2 figs., 1 tab.

Estimation of tool wear length in finish milling using a fuzzy inference algorithm

NASA Astrophysics Data System (ADS)

Ko, Tae Jo; Cho, Dong Woo

1993-10-01

The geometric accuracy and surface roughness are mainly affected by the flank wear at the minor cutting edge in finish machining. A fuzzy estimator obtained by a fuzzy inference algorithm with a max-min composition rule to evaluate the minor flank wear length in finish milling is introduced. The features sensitive to minor flank wear are extracted from the dispersion analysis of a time series AR model of the feed directional acceleration of the spindle housing. Linguistic rules for fuzzy estimation are constructed using these features, and then fuzzy inferences are carried out with test data sets under various cutting conditions. The proposed system turns out to be effective for estimating minor flank wear length, and its mean error is less than 12%.

Development of Procedures for Computing Site Seismicity

DTIC Science & Technology

1993-02-01

surface wave magnitude when in the range of 5 to 7.5. REFERENCES Ambraseys, N.N. (1970). "Some characteristic features of the Anatolian fault zone...geology seismicity and environmental impact, Association of Engineering Geologists , Special Publication. Los Angeles, CA, University Publishers, 1973... Geologists ) Recurrenc.e Recurrence Slip Intervals (yr) at Intervals (yr) over Fault Rate Length a Point on Fault Length of Fault (cm/yI) (km) (Rý) (R

Determining optimal preventive maintenance interval for component of Well Barrier Element in an Oil & Gas Company

NASA Astrophysics Data System (ADS)

Siswanto, A.; Kurniati, N.

2018-04-01

An oil and gas company has 2,268 oil and gas wells. Well Barrier Element (WBE) is installed in a well to protect human, prevent asset damage and minimize harm to the environment. The primary WBE component is Surface Controlled Subsurface Safety Valve (SCSSV). The secondary WBE component is Christmas Tree Valves that consist of four valves i.e. Lower Master Valve (LMV), Upper Master Valve (UMV), Swab Valve (SV) and Wing Valve (WV). Current practice on WBE Preventive Maintenance (PM) program is conducted by considering the suggested schedule as stated on manual. Corrective Maintenance (CM) program is conducted when the component fails unexpectedly. Both PM and CM need cost and may cause production loss. This paper attempts to analyze the failure data and reliability based on historical data. Optimal PM interval is determined in order to minimize the total cost of maintenance per unit time. The optimal PM interval for SCSSV is 730 days, LMV is 985 days, UMV is 910 days, SV is 900 days and WV is 780 days. In average of all components, the cost reduction by implementing the suggested interval is 52%, while the reliability is improved by 4% and the availability is increased by 5%.

Distribution of contact loads over the flank-land of the cutter with a rounded cutting edge

NASA Astrophysics Data System (ADS)

Kozlov, V.; Gerasimov, A.; Kim, A.

2016-04-01

In this paper, contact conditions between a tool and a workpiece material for wear-simulating turning by a cutter with a sharp-cornered edge and with a rounded cutting edge are analysed. The results of the experimental study of specific contact load distribution over the artificial flank wear-land of the cutter in free orthogonal turning of the disk from titanium alloy (Ti6Al2Mo2Cr), ductile (63Cu) and brittle (57Cu1Al3Mn) brasses are described. Investigations were carried out by the method of ‘split cutter’ and by the method of the artificial flank-land of variable width. The experiments with a variable feed rate and a cutting speed show that in titanium alloy machining with a sharp-cornered cutting edge the highest normal contact load (σh max = 3400…2200 MPa) is observed immediately at the cutting edge, and the curve has a horizontal region with the length of 0.2… 0.6 mm. At a distance from the cutting edge, the value of specific normal contact load is dramatically reduced to 1100…500 MPa. The character of normal contact load for a rounded cutting edge is different -it is uniform, and its value is approximately 2 times smaller compared to machining with a sharp-cornered cutting edge. In author’s opinion it is connected with generation of a seizure zone in a chip formation region and explains the capacity of highly worn-out cutting tools for titanium alloys machining. The paper analyses the distribution of tangential contact loads over the flank land, which pattern differs considerably for machining with a sharp-cornered edge and with a rounded cutting edge. Abbreviation and symbols: m/s - meter per second (cutting speed v); mm/r - millimeter per revolution (feed rate f); MPa - mega Pascal (specific contact load as a stress σ or τ) hf - the width of the flank wear land (chamfer) of the cutting tool, flank wear land can be natural or artificial like the one in this paper [mm]; xh - distance from the cutting edge on the surface of the flank-land [mm]; σh - normal specific contact load on the flank land [MPa]; τh - tangential (shear) specific contact load on the flank land [MPa]; HSS - high speed steel (material of cutting tool); Py - radial component of cutting force [N]; Py r - radial component of cutting force on the rake face [N]; Pz - tangential component of cutting force [N]; γ - rake angle of the cutting tool [°] α - clearance angle of the sharp cutting tool [°] αh - clearance angle of the flank wear land [°] ρ - rounding off radius of the cutting edge [mm]; b - width of the machined disk [mm].

Cardiomyocyte hypertrophy, oncosis, and autophagic vacuolization predict mortality in idiopathic dilated cardiomyopathy with advanced heart failure.

PubMed

Vigliano, Carlos A; Cabeza Meckert, Patricia M; Diez, Mirta; Favaloro, Liliana E; Cortés, Claudia; Fazzi, Lucía; Favaloro, Roberto R; Laguens, Rubén P

2011-04-05

The aim of this study was to identify the remodeling parameters cardiomyocyte (CM) damage or death, hypertrophy, and fibrosis that may be linked to outcomes in patients with advanced heart failure (HF) in an effort to understand the pathogenic mechanisms of HF that may support newer therapeutic modalities. There are controversial results on the influence of fibrosis, CM hypertrophy, and apoptosis on outcomes in patients with HF; other modalities of cell damage have been poorly investigated. In endomyocardial biopsy specimens from 100 patients with idiopathic dilated cardiomyopathy and advanced HF, CM diameter and the extent of fibrosis were determined by morphometry. The proportion of CMs with evidence of apoptosis, autophagic vacuolization (AuV), and oncosis was investigated by immunohistochemical methods and by terminal deoxynucleotidyl transferase-mediated deoxyuridine triphosphate nick end labeling. Those parameters were correlated with mortality in 3 years of follow-up by univariate analysis and with multivariate models incorporating the clinical variables more relevant to the prediction of outcomes. CM AuV occurred in 28 patients (0.013 ± 0.012%) and oncosis in 41 (0.109 ± 0.139%). Nineteen patients showed both markers. Apoptotic CM nuclei were observed in 3 patients. In univariate analysis, CM diameter and AuV, either alone or associated with oncosis, were predictors of mortality. In multivariate analysis, CM diameter (hazard ratio: 1.37; 95% confidence interval: 1.12 to 1.68; p = 0.002) and simultaneous presence in the same endomyocardial biopsy specimen of AuV and oncosis (hazard ratio: 2.82; 95% confidence interval: 1.12 to 7.13; p = 0.028) were independent predictors of mortality. CM hypertrophy and AuV, especially in association with oncosis, are predictors of outcome in patients with idiopathic dilated cardiomyopathy and severe HF. Copyright © 2011 American College of Cardiology Foundation. Published by Elsevier Inc. All rights reserved.

Mid-arm muscle circumference as a significant predictor of all-cause mortality in male individuals

PubMed Central

Wu, Li-Wei; Lin, Yuan-Yung; Kao, Tung-Wei; Lin, Chien-Ming; Liaw, Fang-Yih; Wang, Chung-Ching; Peng, Tao-Chun; Chen, Wei-Liang

2017-01-01

Background Emerging evidences indicate that mid-arm muscle circumference (MAMC) is one of the anthropometric indicators that reflect health and nutritional status, but its correlative effectiveness in all-cause mortality prediction of United States individuals remains uncertain. Methods and findings design We investigated the joint association between MAMC and all-cause mortality in the US general population. A population-based longitudinal study of 6,769 participants aged 40 to 90 years in the third National Health and Nutrition Examination Survey (NHANES III) conducted by the National Center for Health Statistics of the Centers for Disease Control and Prevention. All participants were divided into two groups based on the gender: male and female group; each group was then divided into three subgroups depending on their MAMC level. The tertiles were as follows: T1 (18<27.3), T2 (27.3<29.6), T3 (29.6≤40.0) cm in the male group and T1 (15<22.3), T2 (22.3<24.6), T3 (24.6≤44.0) cm in the female group. Multivariable Cox regression analyses and Kaplan–Meier survival probabilities were utilized to jointly relate all-cause mortality risk to different MAMC level. For all-cause mortality in male participants, multivariable adjusted hazard ratios (HRs) were 0.83 (95% confidence interval (CI): 0.69–0.98; p = 0.033) for MAMC of 27.3–29.6 cm compared with 18–27.3 cm, and 0.76 (95% CI: 0.61–0.95; p = 0.018) for MAMC of 29.6–40 cm compared with 18–27.3 cm. For all-cause mortality in female participants, multivariable adjusted hazard ratios (HRs) were 0.84 (95% confidence interval (CI): 0.69–1.02; p = 0.075) for MAMC of 22.3–24.6 cm compared with 15–22.3 cm, and 0.94 (95% CI: 0.75–1.17; p = 0.583) for MAMC of 24.6–44 cm compared with 15–22.3 cm. Conclusion Results support a lower MAMC is associated with a higher mortality risk in male individuals. PMID:28196081

Can the height of fall predict long bone fracture in children under 24 months?

PubMed

Hansoti, Bhakti; Beattie, Tom

2005-12-01

It can be difficult to determine the exact mechanism of injury in infants and babies aged 24 months and under. Falls are the most common mechanism of injury in children. The purpose of this study is to identify the relationship between reported height of fall and long bone fracture. All children aged under 24 months who sustained a fracture (in the year 2003) were identified prospectively on the departmental fracture database. These children were matched for age and sex with children identified as having fallen but not having sustained a fracture. Sixty-three children aged 24 months and under were studied. The median height of fall in this group was 48 cm and that in the control group was 20 cm, P<0.001. A significant correlation was observed between the height of fall (cm) and severity of injury (Pearson's correlation coefficient=0.255). Receiver operating characteristic analysis indicates that the likelihood of significant fracture requiring admission and/or manipulation under anaesthesia occurs with a fall from a height of 56 cm [sensitivity 80% (confidence interval 29-97%), specificity 79% (confidence interval 70-86%)]. It was not possible to identify a height at which the risk of any fracture injury became significantly more likely. Height of fall is only one factor that must be considered in dealing with fracture injury in children aged 24 months or under. However, significant injury presenting with falls from less than 50 cm should be critically evaluated.

Percolation flux and Transport velocity in the unsaturated zone, Yucca Mountain, Nevada

USGS Publications Warehouse

Yang, I.C.

2002-01-01

The percolation flux for borehole USW UZ-14 was calculated from 14C residence times of pore water and water content of cores measured in the laboratory. Transport velocity is calculated from the depth interval between two points divided by the difference in 14C residence times. Two methods were used to calculate the flux and velocity. The first method uses the 14C data and cumulative water content data directly in the incremental intervals in the Paintbrush nonwelded unit and the Topopah Spring welded unit. The second method uses the regression relation for 14C data and cumulative water content data for the entire Paintbrush nonwelded unit and the Topopah Spring Tuff/Topopah Spring welded unit. Using the first method, for the Paintbrush nonwelded unit in boreholeUSW UZ-14 percolation flux ranges from 2.3 to 41.0 mm/a. Transport velocity ranges from 1.2 to 40.6 cm/a. For the Topopah Spring welded unit percolation flux ranges from 0.9 to 5.8 mm/a in the 8 incremental intervals calculated. Transport velocity ranges from 1.4 to 7.3 cm/a in the 8 incremental intervals. Using the second method, average percolation flux in the Paintbrush nonwelded unit for 6 boreholes ranges from 0.9 to 4.0 mm/a at the 95% confidence level. Average transport velocity ranges from 0.6 to 2.6 cm/a. For the Topopah Spring welded unit and Topopah Spring Tuff, average percolation flux in 5 boreholes ranges from 1.3 to 3.2 mm/a. Average transport velocity ranges from 1.6 to 4.0 cm/a. Both the average percolation flux and average transport velocity in the PTn are smaller than in the TS/TSw. However, the average minimum and average maximum values for the percolation flux in the TS/TSw are within the PTn average range. Therefore, differences in the percolation flux in the two units are not significant. On the other hand, average, average minimum, and average maximum transport velocities in the TS/TSw unit are all larger than the PTn values, implying a larger transport velocity for the TS/TSw although there is a small overlap.

Low dose aspirin as adjuvant treatment for venous leg ulceration: pragmatic, randomised, double blind, placebo controlled trial (Aspirin4VLU).

PubMed

Jull, Andrew; Wadham, Angela; Bullen, Chris; Parag, Varsha; Kerse, Ngaire; Waters, Jill

2017-11-24

Objective  To determine the effect of low dose aspirin on ulcer healing in patients with venous leg ulcers. Design  Pragmatic, community based, parallel group, double blind, randomised controlled trial. Setting  Five community nursing centres in New Zealand. Participants  251 adults with venous leg ulcers who could safely be treated with aspirin or placebo: 125 were randomised to aspirin and 126 to placebo. Interventions  150 mg oral aspirin daily or matching placebo for up to 24 weeks treatment, with compression therapy as standard background treatment. Main outcome measures  The primary outcome was time to complete healing of the reference ulcer (largest ulcer if more than one ulcer was present). Secondary outcomes included proportion of participants healed, change in ulcer area, change in health related quality of life, and adverse events. Analysis was by intention to treat. Results  The median number of days to healing of the reference ulcer was 77 in the aspirin group and 69 in the placebo group (hazard ratio 0.85, 95% confidence interval 0.64 to 1.13, P=0.25). The number of participants healed at the endpoint was 88 (70%) in the aspirin group and 101 (80%) in the placebo group (risk difference -9.8%, 95% confidence interval -20.4% to 0.9%, P=0.07). Estimated change in ulcer area was 4.1 cm 2 in the aspirin group and 4.8 cm 2 in the placebo group (mean difference -0.7 cm 2 , 95% confidence interval -1.9 to 0.5 cm 2 , P=0.25). 40 adverse events occurred among 29 participants in the aspirin group and 37 adverse events among 27 participants in the placebo group (incidence rate ratio 1.1, 95% confidence interval 0.7 to 1.7, P=0.71). Conclusion  Our findings do not support the use of low dose aspirin as adjuvant treatment for venous leg ulcers. Trial registration  ClinicalTrials.gov NCT02158806. Published by the BMJ Publishing Group Limited. For permission to use (where not already granted under a licence) please go to http://group.bmj.com/group/rights-licensing/permissions.

Blood analytes of oceanic-juvenile loggerhead sea turtles (Caretta caretta) from Azorean waters: reference intervals, size-relevant correlations and comparisons to neritic loggerheads from western Atlantic coastal waters.

PubMed

Stacy, Nicole I; Bjorndal, Karen A; Perrault, Justin R; Martins, Helen R; Bolten, Alan B

2018-01-01

Blood analyte reference intervals are scarce for immature life stages of the loggerhead sea turtle ( Caretta caretta ). The objectives of this study were to (1) document reference intervals of packed cell volume (PCV) and 20 plasma chemistry analytes from wild oceanic-juvenile stage loggerhead turtles from Azorean waters, (2) investigate correlations with body size (minimum straight carapace length: SCL min ) and (3) compare plasma chemistry data to those from older, larger neritic juveniles (<80 cm SCL min ) and adult loggerheads (≥80 cm SCL min ) that have recruited to the West Atlantic in waters around Cape Canaveral, Florida. Twenty-eight Azorean loggerhead turtles with SCL min of 17.6-60.0 cm (mean 34.9 ± 12.1 cm) were captured, sampled and immediately released. Reference intervals are reported. There were several biologically relevant correlations of blood analytes with SCL min : positive correlations of PCV, proteins and triglycerides with SCL min indicated somatic growth, increasing diving activity and/or diet; negative correlations of tissue enzymes with SCL min suggested faster growth at smaller turtle size, while negative correlations of electrolytes with SCL min indicated differences in diet, environmental conditions and/or osmoregulation unique to the geographic location. Comparisons of loggerhead turtles from the Azores (i.e. oceanic) and Cape Canaveral (i.e. neritic) identified significant differences regarding diet, somatic growth, and/or environment: in Azorean turtles, albumin, triglycerides and bilirubin increased with SCL min , while alkaline phosphatase, lactate dehydrogenase and sodium decreased. In larger neritic Cape Canaveral turtles, aspartate aminotransferase increased with SCL min , while the albumin:globulin ratio, phosphorus and cholesterol decreased. These differences suggest unique physiological disparities between life stage development and migration, reflecting biological and habitat differences between the two populations. This information presents biologically important data that is applicable to stranded individual turtles and to the population level, a tool for the development of conservation strategies, and a baseline for future temporal and spatial investigations of the Azorean loggerhead sea turtle population.

Blood analytes of oceanic-juvenile loggerhead sea turtles (Caretta caretta) from Azorean waters: reference intervals, size-relevant correlations and comparisons to neritic loggerheads from western Atlantic coastal waters

PubMed Central

Bjorndal, Karen A; Perrault, Justin R; Martins, Helen R; Bolten, Alan B

2018-01-01

Abstract Blood analyte reference intervals are scarce for immature life stages of the loggerhead sea turtle (Caretta caretta). The objectives of this study were to (1) document reference intervals of packed cell volume (PCV) and 20 plasma chemistry analytes from wild oceanic-juvenile stage loggerhead turtles from Azorean waters, (2) investigate correlations with body size (minimum straight carapace length: SCLmin) and (3) compare plasma chemistry data to those from older, larger neritic juveniles (<80 cm SCLmin) and adult loggerheads (≥80 cm SCLmin) that have recruited to the West Atlantic in waters around Cape Canaveral, Florida. Twenty-eight Azorean loggerhead turtles with SCLmin of 17.6–60.0 cm (mean 34.9 ± 12.1 cm) were captured, sampled and immediately released. Reference intervals are reported. There were several biologically relevant correlations of blood analytes with SCLmin: positive correlations of PCV, proteins and triglycerides with SCLmin indicated somatic growth, increasing diving activity and/or diet; negative correlations of tissue enzymes with SCLmin suggested faster growth at smaller turtle size, while negative correlations of electrolytes with SCLmin indicated differences in diet, environmental conditions and/or osmoregulation unique to the geographic location. Comparisons of loggerhead turtles from the Azores (i.e. oceanic) and Cape Canaveral (i.e. neritic) identified significant differences regarding diet, somatic growth, and/or environment: in Azorean turtles, albumin, triglycerides and bilirubin increased with SCLmin, while alkaline phosphatase, lactate dehydrogenase and sodium decreased. In larger neritic Cape Canaveral turtles, aspartate aminotransferase increased with SCLmin, while the albumin:globulin ratio, phosphorus and cholesterol decreased. These differences suggest unique physiological disparities between life stage development and migration, reflecting biological and habitat differences between the two populations. This information presents biologically important data that is applicable to stranded individual turtles and to the population level, a tool for the development of conservation strategies, and a baseline for future temporal and spatial investigations of the Azorean loggerhead sea turtle population. PMID:29479433

Role of olivine cumulates in destabilizing the flanks of Hawaiian volcanoes

USGS Publications Warehouse

Clague, D.A.; Denlinger, R.P.

1994-01-01

The south flank of Kilauea Volcano is unstable and has the structure of a huge landslide; it is one of at least 17 enormous catastrophic landslides shed from the Hawaiian Islands. Mechanisms previously proposed for movement of the south flank invoke slip of the volcanic pile over seafloor sediments. Slip on a low friction de??collement alone cannot explain why the thickest and widest sector of the flank moves more rapidly than the rest, or why this section contains a 300 km3 aseismic volume above the seismically defined de??collement. It is proposed that this aseismic volume, adjacent to the caldera in the direction of flank slip, consists of olivine cumulates that creep outward, pushing the south flank seawards. Average primary Kilauea tholeiitic magma contains about 16.5 wt.% MgO compared with an average 10 wt.% MgO for erupted subaerial and submarine basalts. This difference requires fractionation of 17 wt.% (14 vol.%) olivine phenocrysts that accumulate near the base of the magma reservoir where they form cumulates. Submarine-erupted Kilauea lavas contain abundant deformed olivine xenocrysts derived from these cumulates. Deformed dunite formed during the tholeiitic shield stage is also erupted as xenoliths in subsequent alkalic lavas. The deformation structures in olivine xenocrysts suggest that the cumulus olivine was densely packed, probably with as little as 5-10 vol.% intercumulus liquid, before entrainment of the xenocrysts. The olivine cumulates were at magmatic temperatures (>1100??C) when the xenocrysts were entrained. Olivine at 1100??C has a rheology similar to ice, and the olivine cumulates should flow down and away from the summit of the volcano. Flow of the olivine cumulates places constant pressure on the unbuttressed seaward flank, leading to an extensional region that localizes deep intrusions behind the flank; these intrusions add to the seaward push. This mechanism ties the source of gravitational instability to the caldera complex and deep rift systems and, therefore, limits catastrophic sector failure of Hawaiian volcanoes to their active growth phase, when the core of olivine cumulates is still hot enough to flow. ?? 1994 Springer-Verlag.

Cyclic flank-vent and central-vent eruption patterns

NASA Astrophysics Data System (ADS)

Takada, Akira

Many basaltic and andesitic polygenetic volcanoes have cyclic eruptive activity that alternates between a phase dominated by flank eruptions and a phase dominated by eruptions from a central vent. This paper proposes the use of time-series diagrams of eruption sites on each polygenetic volcano and intrusion distances of dikes to evaluate volcano growth, to qualitatively reconstruct the stress history within the volcano, and to predict the next eruption site. In these diagrams the position of an eruption site is represented by the distance from the center of the volcano and the clockwise azimuth from north. Time-series diagrams of Mauna Loa, Kilauea, Kliuchevskoi, Etna, Sakurajima, Fuji, Izu-Oshima, and Hekla volcanoes indicate that fissure eruption sites of these volcanoes migrated toward the center of the volcano linearly, radially, or spirally with damped oscillation, occasionally forming a hierarchy in convergence-related features. At Krafla, terminations of dikes also migrated toward the center of the volcano with time. Eruption sites of Piton de la Fournaise did not converge but oscillated around the center. After the convergence of eruption sites with time, the central eruption phase is started. The intrusion sequence of dikes is modeled, applying crack interaction theory. Variation in convergence patterns is governed by the regional stress and the magma supply. Under the condition that a balance between regional extension and magma supply is maintained, the central vent convergence time during the flank eruption phase is 1-10 years, whereas the flank vent recurrence time during the central eruption phase is greater than 100 years owing to an inferred decrease in magma supply. Under the condition that magma supply prevails over regional extension, the central vent convergence time increases, whereas the flank vent recurrence time decreases owing to inferred stress relaxation. Earthquakes of M>=6 near a volcano during the flank eruption phase extend the central vent convergence time. Earthquakes during the central eruption phase promote recurrence of flank eruptions. Asymmetric distribution of eruption sites around the flanks of a volcano can be caused by local stress sources such as an adjacent volcano.

Cycles of edifice growth and destruction at Tharsis Tholus, Mars

NASA Astrophysics Data System (ADS)

Platz, T.; McGuire, P. C.; Münn, S.; Cailleau, B.; Dumke, A.; Neukum, G.; Procter, J. N.

2009-04-01

Tharsis Tholus, approx. 800 km to the ENE of Ascraeus Mons, is unique among Martian volcanoes as it is structurally divided into sectors suggesting a complex volcano-tectonic evolution [1-3]. The objective of this study was 1) to identify cycles of edifice growth and destruction and causes of instability, 2) to estimate the mineralogical composition of rocks and loose deposits, 3) to provide a time frame of volcanic activity, and 4) to characterize eruptive styles at Tharsis Tholus. The edifice has a planar extension of 155 km (NW-SE) by 125 km (NE-SW) with an elevation up to 9000 m on the west flank. The volcano exhibits a strong relief and can be subdivided into five major sectors: north flank, west flank, east flank, south flank, and the central caldera. The slopes vary from <1° up to 27°. The volcano is partly buried by lava flows, presumably originating from the Tharsis Montes. As a result, the original basement surface is unknown. However, to the east of the volcano, the tips of a large buried impact-crater rim are still preserved. Using the approximate extension of 41×47 km of the impact-crater rim, a rim height of about 500 m results [4], with the basement being at 500 m altitude. The visible edifice volume is approximately 31.1×10³ km³, however, if a basal horizontal plane at 500 m is assumed, an edifice volume of >50×10³ km³ results. The structure of the edifice indicates at least four large deformation events. The central and most prominent structure of the volcano is its central caldera. It is bordered by a well-preserved system of concentric normal faults. The maximum subsidence of the caldera floor is 3000 m; the collapse volume is calculated at approx. 2160 km³. The caldera (36.7×38.9 km) has an elliptic shape oriented NW-SE. The flanks of the volcano are characterized by four large scarps oriented radially from the central caldera. The arcuate shapes of the scarps and their orientations suggest voluminous collapses of the western and eastern volcano flanks. On the southern flank, a further caldera structure is displayed by an arcuate scarp and a plateau-like plain. Due to a large impact event, most of the caldera structure is now concealed. Large parts of the volcano are cut by parallel normal faults forming grabens. These grabens post-date the large collapse structures at the volcano's flanks. All graben structures are oriented in the NE-SW direction. Minimum and maximum graben widths are 0.47 km and 4.36 km, respectively. Multiple areas of volcanic activity at Tharsis Tholus were identified: 1) flank eruptions associated with graben formation, 2) fissure eruptions, and 3) a satellite vent at the foot of the west flank forming a strato-cone. This satellite volcano has a nearly perfect conical shape and rises 1168 m above the surrounding lava plain. The visible volume is about 5.7 km³. There are currently no indications for volcanic activity prior to or after the formation of the central caldera. First results of crater counting indicate that the oldest parts of the edifice were constructed at around 3.82 Ga (late Noachian). The west flank appears to be ca. 3.73 Ga old whereas the east flank shows an age of ca. 1.08 Ga (Middle Amazonian). A fissure eruption on the south flank produced a lava flow at around 196 Ma (Late Amazonian). The existence of two main loci of activity, the central caldera and the subordinate southern caldera, indicate a multipart magma storage system. Changes in lava rheology are observed (shield volcano vs. strato-cone), which indicates magma differentiation within the plumbing system of the volcano during phases of activity. The lifetime of the volcano spans more than 3.6 Gyrs starting prior to 3.82 Ga. Hence, the fissure eruption at around 196 Ma may not represent the final volcanic activity at Tharsis Tholus. Scarps on the western and eastern flanks are interpreted to be structurally related to at least two large sector collapses. Their arcuate shape can be fitted by ellipses suggesting more or less sub-vertical caldera-like collapses, with the major portion of the upper flanks collapsing into the centre of the volcano and minor portions of the lower flanks collapsing laterally forming debris avalanches. Graben formations across the edifice reflect a regional-tectonic deformation superimposed on the local volcano-tectonic pattern of Tharsis Tholus. The least compressive stress of this regional stress field is oriented NW-SE which agrees with the direction of ellipticity of the central caldera and fitted ellipses to the flank scarps. The geometry of the central caldera indicates a shallow magma storage region, probably at the base of the volcano. References: [1] F. Maciejak et al. 1995. LPS XXVI, 881-882. [2] J. B. Plescia 2001. LPS XXXII, 1090-1091. [3] J. B. Plescia 2003. Icarus, 165, 223-241. [4] D. H. Scott and K. L. Tanaka 1986. US Geol. Survey. Miscellaneous Investigations Map I-1802A.

1. FRONT (NORTH) SIDE; SMOKESTACKS FLANK PROTECTING BAY THAT CONTAINS ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

1. FRONT (NORTH) SIDE; SMOKESTACKS FLANK PROTECTING BAY THAT CONTAINS COAL ELEVATING EQUIPMENT - Rath Packing Company, Boiler Room, Sycamore Street between Elm & Eighteenth Streets, Waterloo, Black Hawk County, IA

Evidence from a natural experiment that malaria parasitemia is pathogenic in retinopathy-negative cerebral malaria.

PubMed

Small, Dylan S; Taylor, Terrie E; Postels, Douglas G; Beare, Nicholas Av; Cheng, Jing; MacCormick, Ian Jc; Seydel, Karl B

2017-06-07

Cerebral malaria (CM) can be classified as retinopathy-positive or retinopathy-negative, based on the presence or absence of characteristic retinal features. While malaria parasites are considered central to the pathogenesis of retinopathy-positive CM, their contribution to retinopathy-negative CM is largely unknown. One theory is that malaria parasites are innocent bystanders in retinopathy-negative CM and the etiology of the coma is entirely non-malarial. Because hospitals in malaria-endemic areas often lack diagnostic facilities to identify non-malarial causes of coma, it has not been possible to evaluate the contribution of malaria infection to retinopathy-negative CM. To overcome this barrier, we studied a natural experiment involving genetically inherited traits, and find evidence that malaria parasitemia does contribute to the pathogenesis of retinopathy-negative CM. A lower bound for the fraction of retinopathy-negative CM that would be prevented if malaria parasitemia were to be eliminated is estimated to be 0.93 (95% confidence interval: 0.68, 1).

Beyond Colorado's Front Range - A new look at Laramide basin subsidence, sedimentation, and deformation in north-central Colorado

USGS Publications Warehouse

Cole, James C.; Trexler, James H.; Cashman, Patricia H.; Miller, Ian M.; Shroba, Ralph R.; Cosca, Michael A.; Workman, Jeremiah B.

2010-01-01

This field trip highlights recent research into the Laramide uplift, erosion, and sedimentation on the western side of the northern Colorado Front Range. The Laramide history of the North Park?Middle Park basin (designated the Colorado Headwaters Basin in this paper) is distinctly different from that of the Denver basin on the eastern flank of the range. The Denver basin stratigraphy records the transition from Late Cretaceous marine shale to recessional shoreline sandstones to continental, fluvial, marsh, and coal mires environments, followed by orogenic sediments that span the K-T boundary. Upper Cretaceous and Paleogene strata in the Denver basin consist of two mega-fan complexes that are separated by a 9 million-year interval of erosion/non-deposition between about 63 and 54 Ma. In contrast, the marine shale unit on the western flank of the Front Range was deeply eroded over most of the area of the Colorado Headwaters Basin (approximately one km removed) prior to any orogenic sediment accumulation. New 40Ar-39Ar ages indicate the oldest sediments on the western flank of the Front Range were as young as about 61 Ma. They comprise the Windy Gap Volcanic Member of the Middle Park Formation, which consists of coarse, immature volcanic conglomerates derived from nearby alkalic-mafic volcanic edifices that were forming at about 65?61 Ma. Clasts of Proterozoic granite, pegmatite, and gneiss (eroded from the uplifted core of the Front Range) seem to arrive in the Colorado Headwaters Basin at different times in different places, but they become dominant in arkosic sandstones and conglomerates about one km above the base of the Colorado Headwaters Basin section. Paleocurrent trends suggest the southern end of the Colorado Headwaters Basin was structurally closed because all fluvial deposits show a northward component of transport. Lacustrine depositional environments are indicated by various sedimentological features in several sections within the >3 km of sediment preserved in the Colorado Headwaters Basin, suggesting this basin may have remained closed throughout the Paleocene and early Eocene. The field trip also addresses middle Eocene(?) folding of the late Laramide basin-fill strata, related to steep reverse faults that offset the Proterozoic crystalline basement. Late Oligocene magmatic activity is indicated by dikes, plugs, and eruptive volcanic rocks in the Rabbit Ears Range and the Never Summer Mountains that span and flank the Colorado Headwaters Basin. These intrusions and eruptions were accompanied by extensional faulting along predominantly northwesterly trends. Erosion accompanied the late Oligocene igneous activity and faulting, leading to deposition of boulder conglomerates and sandstones of the North Park Formation and high-level conglomerates across the landscape that preserve evidence of a paleo-drainage network that drained the volcanic landscape.

A Narrow Quantitative Trait Locus in C. elegans Coordinately Affects Longevity, Thermotolerance, and Resistance to Paraquat

PubMed Central

Vertino, Anthony; Ayyadevara, Srinivas; Thaden, John J.; Reis, Robert J. Shmookler

2011-01-01

By linkage mapping of quantitative trait loci, we previously identified at least 11 natural genetic variants that significantly modulate Caenorhabditis elegans life-span (LS), many of which would have eluded discovery by knock-down or mutation screens. A region on chromosome IV between markers stP13 and stP35 had striking effects on longevity in three inter-strain crosses (each P < 10−9). In order to define the limits of that interval, we have now constructed two independent lines by marker-based selection during 20 backcross generations, isolating the stP13–stP35 interval from strain Bergerac-BO in a CL2a background. These congenic lines differed significantly from CL2a in LS, assayed in two environments (each P < 0.001). We then screened for exchange of flanking markers to isolate recombinants that partition this region, because fine-mapping the boundaries for overlapping heteroallelic spans can greatly narrow the implicated interval. Recombinants carrying the CL2a allele at stP35 were consistently long-lived compared to those retaining the Bergerac-BO allele (P < 0.001), and more resistant to temperature elevation and paraquat (each ∼1.7-fold, P < 0.0001), but gained little protection from ultraviolet or peroxide stresses. Two rounds of recombinant screening, followed by fine-mapping of break-points and survival testing, narrowed the interval to 0.18 Mb (13.35–13.53 Mb) containing 26 putative genes and six small-nuclear RNAs – a manageable number of targets for functional assessment. PMID:22303358

Earthquake Clustering on Normal Faults: Insight from Rate-and-State Friction Models

NASA Astrophysics Data System (ADS)

Biemiller, J.; Lavier, L. L.; Wallace, L.

2016-12-01

Temporal variations in slip rate on normal faults have been recognized in Hawaii and the Basin and Range. The recurrence intervals of these slip transients range from 2 years on the flanks of Kilauea, Hawaii to 10 kyr timescale earthquake clustering on the Wasatch Fault in the eastern Basin and Range. In addition to these longer recurrence transients in the Basin and Range, recent GPS results there also suggest elevated deformation rate events with recurrence intervals of 2-4 years. These observations suggest that some active normal fault systems are dominated by slip behaviors that fall between the end-members of steady aseismic creep and periodic, purely elastic, seismic-cycle deformation. Recent studies propose that 200 year to 50 kyr timescale supercycles may control the magnitude, timing, and frequency of seismic-cycle earthquakes in subduction zones, where aseismic slip transients are known to play an important role in total deformation. Seismic cycle deformation of normal faults may be similarly influenced by its timing within long-period supercycles. We present numerical models (based on rate-and-state friction) of normal faults such as the Wasatch Fault showing that realistic rate-and-state parameter distributions along an extensional fault zone can give rise to earthquake clusters separated by 500 yr - 5 kyr periods of aseismic slip transients on some portions of the fault. The recurrence intervals of events within each earthquake cluster range from 200 to 400 years. Our results support the importance of stress and strain history as controls on a normal fault's present and future slip behavior and on the characteristics of its current seismic cycle. These models suggest that long- to medium-term fault slip history may influence the temporal distribution, recurrence interval, and earthquake magnitudes for a given normal fault segment.

A Southern Ocean Diatom Record of the Mid-Pleistocene Transition from the Amundsen Sea, Antarctica

NASA Astrophysics Data System (ADS)

Konfirst, M. A.; Scherer, R. P.

2010-12-01

In 2001 an 18.49m core was collected aboard Polarstern (cruise ANT-XVIII/5a) from the upper continental rise offshore from Pine Island Bay in the Amundsen Sea (69°19’S, 108°27’W) at 4014 m water depth. This location is important because it is one of the three main discharge locations for the WAIS and it is expected that IRD from melting icebergs would be concentrated in this region. Hillenbrand et al. (2009) collected data on magnetic susceptibility, wet bulk density, water content, biogenic opal, Ba/Al ratios (as a proxy for paleoproductivity), clay mineral content, and sand/ gravel fractions. To complement this data set, a high-resolution record (sample spacing 10cm) of the siliceous microfossil assemblages (diatoms and silicoflagellates) present in the core has been generated. Data include both relative abundance of individual diatom species and genera and absolute diatom abundance. Species composition in the upper 1004 cm is dominated by Fragilariopsis kerguelensis, which consistently composes 80-90% of the assemblage. Below 1004 cm the assemblage is more diverse, with Actinocyclus ingens, Thalassiothrix antarctica and F. kerguelensis consistently comprising the bulk of the assemblage. Additionally, the occurrence of A. ingens, Thalassiosira elliptipora and T. fasciculata can be used to confirm and further refine the age model established by Hillenbrand et al. (2009). Absolute abundance of diatom frustules varies from samples completely barren fossils to those with concentrations >4 x 107 valves/ g sediment and follows the biogenic opal measurements of Hillenbrand et al. (2009). A clear relationship between diatom abundance and glacial/interglacial variability is apparent in the upper 1004 cm and has been documented in the geochemical measurements of Hillenbrand et al. (2009). Significantly lower absolute abundance is observed below ~1004 cm; however, intervals with samples barren of fossils continue to alternate with those containing low concentrations. Diatom abundance data and biostratigraphy are used in conjunction with paleomagnetic data (Hillenbrand et al. 2009) to extend the age model to the bottom of the core. The genera Rhizosolenia and Thalassionema appear in significant abundances (i.e. >10%) in samples where Miocene diatoms (genera: Triceratium and Denticulopsis) are observed and may therefore represent significant intervals of reworking. The age model indicates that these intervals correspond to isotope stages 12 and 16- the coldest glacial intervals in the past 1.2 myr. These genera also occur sporadically in an interval correlated to stages 21-25, and correspond to a particularly low amplitude interglacial period. This core represents a continuous record of sediment accumulation in the Amundsen Sea during the past 1.2 myr. A significant change in both sediment accumulation style and diatom assemblages is observed at 1004 cm. These are concurrent with the extinction of A. ingens and the end of the Mid-Pleistocene Transition (i.e. the onset of modern eccentricity/precession-paced glacial cycles ~700ka), and it is suggested that a major oceanographic reorganization occurred in the Southern Ocean during this time.

Identifying removable radioactivity on the surface of cats during the first week after treatment with iodine 131.

PubMed

Chalmers, H J; Scrivani, Peter V; Dykes, Nathan L; Erb, Hollis N; Hobbs, J M; Hubble, Lorna J

2006-01-01

Because radioiodine (1-131) is excreted in urine and saliva, treated cats can accumulate I-131 on their coats from contacting soiled litter and grooming. This could result in removable radioactivity, which is a potential source of human exposure to radiation and specifically to internal contamination. The purpose of this study was to determine if there is removable radioactivity on cats treated with I-131. Daily wipe tests were performed for 7 days at two sites (both flanks, one site; and all four paws, one site) on six hyperthyroid cats treated with I-131. A y counter was used to determine the counts per minute (cpm) of the samples, which were converted to disintegrations per minute (dpm) to estimate activity. The results were compared to the New York State limits of removable activity for a non-controlled area (<1000dpm/100 cm2) to determine if the amount of removable activity was acceptable for a member of the public. The median value of removable activity was 241 dpm (range from 34 to 4184 dpm) for the flanks, and 308 dpm (range from 60 to 1890 dpm) for the paws. The amount of removable radioactivity on the surface of hospitalized cats treated with I-131 during the first week after treatment, occasionally and without obvious pattern, exceeded the New York State limit. Sporadic activity as high as 4148 dpm was found. It is prudent to advise owners to observe routine hygiene when handling cats after discharge to minimize the risk of internal contamination.

Polymorphic human (CTAT)n microsatellite provides a conserved linkage marker for mouse mutants causing cleft palate, vestibular defects, obesity and ataxia

DOE Office of Scientific and Technical Information (OSTI.GOV)

Griffith, A.J.; Burgess, D.L.; Kohrman, D.

1994-09-01

The Twirler mutation (Tw) causing cleft palate {plus_minus} cleft lip, vestibular defects and obesity is located within 0.5 cM of an ataxia locus (ax) on mouse chromosome 18. We identified a transgene-induced insertional mutation with vestibular and craniofacial defects that appears to be a new allele of Twirler. Mouse DNA flanking the transgene insertion site was isolated from a cosmid library. An evolutionarily conserved, zoo blot positive cosmid subclone was used to probe a human {lambda} genomic library. From the sequence of a highly homologous human {lambda} clone, we designed STS primers and screened a human P1 library. DNA frommore » two positive P1 clones was hybridized with simple sequence probes, and a (CTAT){sub 12} repeat was detected. Analysis of 62 CEPH parents with primers flanking the repeat identified six alleles containing 9 to 14 copies of the repeat, at frequencies of 0.17, 0.17, 0.17, 0.27, 0.15 and 0.07, respectively. The observed heterozygosity was 49/62 with a calculated PIC value of 0.76. This polymorphic microsatellite marker, designated Umi3, was mapped to the predicted conserved human linkage group by analysis of somatic cell hybrid panels. The anticipated short distance between Umi3 and the disease genes will facilitate detection of linkage in small families. We would like to type appropriate human pedigrees with Umi3 in order to identify patients with inherited disorders homologous to the mouse mutations Twirler and ataxia.« less

Androgen Deprivation Therapy Use in the Setting of High-dose Radiation Therapy and the Risk of Prostate Cancer–Specific Mortality Stratified by the Extent of Competing Mortality

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rose, Brent S., E-mail: brose44@gmail.com; Chen, Ming-Hui; Wu, Jing

Purpose: The addition of androgen deprivation therapy (ADT) to radiation therapy (RT) is the standard of care for men with intermediate- and high-risk prostate cancer (PC). However, whether competing mortality (CM) affects the ability of ADT to improve, survival remains unanswered. Methods and Materials: We calculated a CM risk score using a Fine-Gray semiparametric model that included age and cardiometabolic comorbidities from a cohort of 17,669 men treated with high-dose RT with or without supplemental ADT for nonmetastatic PC. Fine and Gray competing risk regression analysis was used to assess whether ADT reduced the risk of PC-specific mortality for menmore » with a low versus a high risk of CM among the 4550 patients within the intermediate- and high-risk cohort after adjustment for established PC prognostic factors, year of treatment, site, and ADT propensity score. Results: After a median follow-up of 8.4 years, 1065 men had died, 89 (8.36%) of PC. Among the men with a low CM score, ADT use was associated with a significant reduction in the risk of PC-specific mortality (adjusted hazard ratio 0.35, 95% confidence interval 0.14-0.87, P=.02) but was not for men with high CM (adjusted hazard ratio 1.33, 95% confidence interval 0.77-2.30, P=.30). Conclusions: Adding ADT to high-dose RT appears to be associated with decreased PC-specific mortality risk in men with a low but not a high CM score. These data should serve to heighten awareness about the importance of considering competing risks when determining whether to add ADT to RT for older men with intermediate- or high-risk PC.« less

Use of laboratory studies to develop a dispersal model for Missouri River pallid sturgeon early life intervals

USGS Publications Warehouse

Kynard, B.; Parker, E.; Pugh, D.; Parker, T.

2007-01-01

Understanding the drift dynamics of pallid sturgeon (Scaphirhynchus albus) early life intervals is critical to evaluating damming effects on sturgeons. However, studying dispersal behavior is difficult in rivers. In stream tanks, we studied the effect of velocity on dispersal and holding ability, estimated swimming height, and used the data to estimate drift distance of pallid sturgeon. Dispersal was by days 0-10 embryos until fish developed into larvae on day 11 after 200 CTU (daily cumulative temperature units). Embryos in tanks with a mean channel velocity of 30.1 cm s-1 and a side eddy could not hold position in the eddy, so current controlled dispersal. Late embryos (days 6-10 fish) dispersed more passes per hour than early embryos (days 0-5 fish) and held position in side eddies when channel velocities were 17.3 cm s-1 or 21.1 cm s-1. Day and night swim-up and drift by embryos is an effective adaptation to disperse fish in channel flow and return fish from side eddies to the channel. Early embryos swam <0.50 cm above the bottom and late embryos swam higher (mean, 90 cm). A passive drift model using a near bottom velocity of 32 cm s-1 predicted that embryos dispersing for 11 days in channel flow would travel 304 km. Embryos spawned at Fort Peck Dam, Missouri River, must stop dispersal in <330 km or enter Lake Sakakawea, where survival is likely poor. The model suggests there may be a mismatch between embryo dispersal distance and location of suitable rearing habitat. This situation may be common for pallid sturgeon in dammed rivers. ?? 2007 Blackwell Verlag.

Piggyback tectonics: Long-term growth of Kilauea on the south flank of Mauna Loa

USGS Publications Warehouse

Lipman, Peter W.; Sisson, Thomas W.; Coombs, Michelle L.; Calvert, Andrew T.; Kimura, Jun-Ichi

2006-01-01

Present-day Kilauea is the more dynamic edifice, but prior to inception of Kilauea and during its early growth, Mauna Loa is inferred to have undergone intense volcano spreading, involving the Kaoiki–Honuapo fault system (considered a geometric analog of the Hilina system on Kilauea). Cumulative deformation of Mauna Loa's south flank during growth of Kilauea since 200–300 ka is estimated to have involved > 10 km of seaward spreading, displacing the rift zones of Kīlauea while its deep plumbing system and summit magma reservoir remained nearly fixed in space. Kilauea's rift zones, rather than migrating southward with time solely due to dike emplacement preferentially on the mobile seaward side, alternatively are interpreted to have been transported passively southward, “piggyback” style, during shield-stage growth of Kilauea as a blister on the still-mobile south flank of Mauna Loa. Such an evolution of Kilauea accounts for the arcuate geometry of the present-day rift zones, proximity of the summit magma supply to the exposed flank of Mauna Loa, initial submarine growth of the ancestral edifice, and present-day location of Mauna Loa rocks at shallow depth beneath the south flank of Kilauea.

Hazard potential of volcanic flank collapses raised by new megatsunami evidence

PubMed Central

Ramalho, Ricardo S.; Winckler, Gisela; Madeira, José; Helffrich, George R.; Hipólito, Ana; Quartau, Rui; Adena, Katherine; Schaefer, Joerg M.

2015-01-01

Large-scale gravitational flank collapses of steep volcanic islands are hypothetically capable of triggering megatsunamis with highly catastrophic effects. Yet, evidence for the generation and impact of collapse-triggered megatsunamis and their high run-ups remains scarce or is highly controversial. Therefore, doubts remain on whether island flank failures truly generate enough volume flux to trigger giant tsunamis, leading to diverging opinions concerning the real hazard potential of such collapses. We show that one of the most prominent oceanic volcanoes on Earth—Fogo, in the Cape Verde Islands—catastrophically collapsed and triggered a megatsunami with devastating effects ~73,000 years ago. Our deductions are based on the recent discovery and cosmogenic 3He dating of tsunamigenic deposits found on nearby Santiago Island, which attest to the impact of this giant tsunami and document wave run-up heights exceeding 270 m. The evidence reported here implies that Fogo’s flank failure involved at least one fast and voluminous event that led to a giant tsunami, in contrast to what has been suggested before. Our observations therefore further demonstrate that flank collapses may indeed catastrophically happen and are capable of triggering tsunamis of enormous height and energy, adding to their hazard potential. PMID:26601287

Binaural comodulation masking release: Effects of masker interaural correlation

PubMed Central

Hall, Joseph W.; Buss, Emily; Grose, John H.

2007-01-01

Binaural detection was examined for a signal presented in a narrow band of noise centered on the on-signal masking band (OSB) or in the presence of flanking noise bands that were random or comodulated with respect to the OSB. The noise had an interaural correlation of 1.0 (No), 0.99 or 0.95. In No noise, random flanking bands worsened Sπ detection and comodulated bands improved Sπ detection for some listeners but had no effect for other listeners. For the 0.99 or 0.95 interaural correlation conditions, random flanking bands were less detrimental to Sπ detection and comodulated flanking bands improved Sπ detection for all listeners. Analyses based on signal detection theory indicated that the improvement in Sπ thresholds obtained with comodulated bands was not compatible with an optimal combination of monaural and binaural cues or to across-frequency analyses of dynamic interaural phase differences. Two accounts consistent with the improvement in Sπ thresholds in comodulated noise were (1) envelope information carried by the flanking bands improves the weighting of binaural cues associated with the signal; (2) the auditory system is sensitive to across-frequency differences in ongoing interaural correlation. PMID:17225415

A model of diffuse degassing at three subduction-related volcanoes

NASA Astrophysics Data System (ADS)

Williams-Jones, Glyn; Stix, John; Heiligmann, Martin; Charland, Anne; Sherwood Lollar, Barbara; Arner, N.; Garzón, Gustavo V.; Barquero, Jorge; Fernandez, Erik

Radon, CO2 and δ13C in soil gas were measured at three active subduction-related stratovolcanoes (Arenal and Poás, Costa Rica; Galeras, Colombia). In general, Rn, CO2 and δ13C values are higher on the lower flanks of the volcanoes, except near fumaroles in the active craters. The upper flanks of these volcanoes have low Rn concentrations and light δ13C values. These observations suggest that diffuse degassing of magmatic gas on the upper flanks of these volcanoes is negligible and that more magmatic degassing occurs on the lower flanks where major faults and greater fracturing in the older lavas can channel magmatic gases to the surface. These results are in contrast to findings for Mount Etna where a broad halo of magmatic CO2 has been postulated to exist over much of the edifice. Differences in radon levels among the three volcanoes studied here may result from differences in age, the degree of fracturing and faulting, regional structures or the level of hydrothermal activity. Volcanoes, such as those studied here, act as plugs in the continental crust, focusing magmatic degassing towards crater fumaroles, faults and the fractured lower flanks.

Male hamsters discriminate estrous state from vaginal secretions and individuals from flank marks

PubMed Central

delBarco-Trillo, Javier; LaVenture, Alex B.; Johnston, Robert E.

2009-01-01

It is clear that male hamsters discriminate between the odors of individual, conspecific females, as shown by using habituation-dishabituation methods. However, it is not clear from past research whether male hamsters are able to discriminate between the odors of estrous and non-estrous females. A series of habituation-dishabituation experiments were conducted to determine whether males discriminated between different estrous cycle states using two female secretions, those from flank glands and vaginal secretions. We found that, when habituated to a female flank-gland secretion, males discriminated between this female and a second female on the test trial, whether both were in estrus, both were in diestrus, or one was in estrus and the other in diestrus. There was no difference, however, in the magnitude of their dishabituation response toward flank-gland odors of females in estrus and diestrus. These results suggest that males use flank-gland odors to gain information primarily about individuals. When tested with vaginal secretions in habituation-dishabituation tests, males only showed differences in investigation when the second female was in estrus, indicating that males use vaginal secretions to gain information primarily about reproductive state. PMID:19615611

Male hamsters discriminate estrous state from vaginal secretions and individuals from flank marks.

PubMed

delBarco-Trillo, Javier; LaVenture, Alex B; Johnston, Robert E

2009-09-01

It is clear that male hamsters discriminate between the odors of individual, conspecific females, as shown by using habituation-dishabituation methods. However, it is not clear from past research whether male hamsters are able to discriminate between the odors of estrous and non-estrous females. A series of habituation-dishabituation experiments was conducted to determine whether males discriminated between different estrous cycle states using two female secretions, those from flank-glands and vaginal secretions. We found that, when habituated to a female flank-gland secretion, males discriminated between this female and a second female on the test trial, whether both were in estrus, both were in diestrus, or one was in estrus and the other in diestrus. There was no difference, however, in the magnitude of their dishabituation response toward flank-gland odors of females in estrus and diestrus. These results suggest that males use flank-gland odors to gain information primarily about individuals. When tested with vaginal secretions in habituation-dishabituation tests, males only showed differences in investigation when the second female was in estrus, indicating that males use vaginal secretions to gain information primarily about reproductive state.

Unfocused F Ring

NASA Image and Video Library

2007-04-02

The F ring dissolves into a fuzzy stream of particles -- rather different from its usual appearance of a narrow, bright core flanked by dimmer ringlets. Also notable here is the bright clump of material that flanks the ring core

West Flank Coso FORGE Magnetotelluric 3D Data

DOE Data Explorer

Doug Blankenship

2016-01-01

This is the 3D version of the MT data for the West Flank FORGE area.The Coso geothermal field has had three Magnetotelluric (MT) datasets collected including surveys in 2003, 2006, and 2011. The final collection, in 2011, expanded the survey to the west and covers the West Flank of FORGE area.This most recent data set was collected by Schlumberger/WesternGeco and inverted by the WesternGeco GeoSolutions Integrated EM Center of Excellence in Milan, Italy; the 2003 and 2006 data were integrated for these inversions in the present study.

Transducer model produces facilitation from opposite-sign flanks

NASA Technical Reports Server (NTRS)

Solomon, J. A.; Watson, A. B.; Morgan, M. J.

1999-01-01

Small spots, lines and Gabor patterns can be easier to detect when they are superimposed upon similar spots, lines and Gabor patterns. Traditionally, such facilitation has been understood to be a consequence of nonlinear contrast transduction. Facilitation has also been reported to arise from non-overlapping patterns with opposite sign. We point out that this result does not preclude the traditional explanation for superimposed targets. Moreover, we find that facilitation from opposite-sign flanks is weaker than facilitation from same-sign flanks. Simulations with a transducer model produce opposite-sign facilitation.

Is the C-terminal flanking peptide of rat cholecystokinin double sulphated?

PubMed

Adrian, T E; Domin, J; Bacarese-Hamilton, A J; Bloom, S R

1986-02-03

A specific radioimmunoassay was developed to the predicted nine amino acid C-terminal flanking peptide of cholecystokinin (peptide serine serine, PSS). In aqueous extracts of rat brain, PSS was undetectable unless the extracts were first treated with arylsulphatase, which also resulted in desulphation of cholecystokinin. The reverse-phase HPLC analysis of partially desulphated extracts showed the presence of two peaks intermediate to the naturally occurring and the completely desulphated forms. It is therefore proposed that the CCK-flanking peptide PSS has both tyrosine residues sulphated.

Integrated optical XY coupler

DOEpatents

Vawter, G. Allen; Hadley, G. Ronald

1997-01-01

An integrated optical XY coupler having two converging input waveguide arms meeting in a central section and a central output waveguide arm and two diverging flanking output waveguide arms emanating from the central section. In-phase light from the input arms constructively interfers in the central section to produce a single mode output in the central output arm with the rest of the light being collected in the flanking output arms. Crosstalk between devices on a substrate is minimized by this collection of the out-of-phase light by the flanking output arms of the XY coupler.

Integrated optical XY coupler

DOEpatents

Vawter, G.A.; Hadley, G.R.

1997-05-06

An integrated optical XY coupler having two converging input waveguide arms meeting in a central section and a central output waveguide arm and two diverging flanking output waveguide arms emanating from the central section. In-phase light from the input arms constructively interferes in the central section to produce a single mode output in the central output arm with the rest of the light being collected in the flanking output arms. Crosstalk between devices on a substrate is minimized by this collection of the out-of-phase light by the flanking output arms of the XY coupler. 9 figs.

Effect of different rest intervals after whole-body vibration on vertical jump performance.

PubMed

Dabbs, Nicole C; Muñoz, Colleen X; Tran, Tai T; Brown, Lee E; Bottaro, Martim

2011-03-01

Whole-body vibration (WBV) may potentiate vertical jump (VJ) performance via augmented muscular strength and motor function. The purpose of this study was to evaluate the effect of different rest intervals after WBV on VJ performance. Thirty recreationally trained subjects (15 men and 15 women) volunteered to participate in 4 testing visits separated by 24 hours. Visit 1 acted as a familiarization visit where subjects were introduced to the VJ and WBV protocols. Visits 2-4 contained 2 randomized conditions per visit with a 10-minute rest period between conditions. The WBV was administered on a pivotal platform with a frequency of 30 Hz and an amplitude of 6.5 mm in 4 bouts of 30 seconds for a total of 2 minutes with 30 seconds of rest between bouts. During WBV, subjects performed a quarter squat every 5 seconds, simulating a countermovement jump (CMJ). Whole-body vibration was followed by 3 CMJs with 5 different rest intervals: immediate, 30 seconds, 1 minute, 2 minutes, or 4 minutes. For a control condition, subjects performed squats with no WBV. There were no significant (p > 0.05) differences in peak velocity or relative ground reaction force after WBV rest intervals. However, results of VJ height revealed that maximum values, regardless of rest interval (56.93 ± 13.98 cm), were significantly (p < 0.05) greater than the control condition (54.44 ± 13.74 cm). Therefore, subjects' VJ height potentiated at different times after WBV suggesting strong individual differences in optimal rest interval. Coaches may use WBV to enhance acute VJ performance but should first identify each individual's optimal rest time to maximize the potentiating effects.

Design study of imaging techniques for the Starprobe mission

NASA Technical Reports Server (NTRS)

Bottema, M.

1981-01-01

A 10 cm aperture, off-axis aplanatic gregorian telescope is investigated as a candidate instrument for imaging from Starprobe in the 115 nm to 900 nm wavelength range. Focal lengths of 300 cm (f/30) and 150 cm (f/15) are compared in terms of optical performance, compatibility with the Starprobe spacecraft and response to the thermal environment in a 20-hour time interval, centered on perihelion. Ultraviolet/visible imaging from Starprobe concluded should be technically feasible. A 10 cm aperture telescope with focal length close to 300 cm is recommended for further study. This instrument should be capable of a detector-limited angular resoluton of about 2 arc sec. The estimated overall dimensions should not exceed 105 cm by 40 cm by 25 cm and its mass be less than 28 kg. The recommended concept assumes solid blank ULE mirrors, a graphite-epoxy optical bench, and an aluminum thermal enclosure, covered with multilayer insulation. These materials must be carefully selected to minimize the risk of UV photopolymerization of contaminants at the mirror surfaces during observtions.

Geologic setting of the proposed West Flank Forge Site, California: Suitability for EGS research and development

USGS Publications Warehouse

Sabin, Andrew; Blake, Kelly; Lazaro, Mike; Blankenship, Douglas; Kennedy, Mack; McCullough, Jess; DeOreo, S.B.; Hickman, Stephen H.; Glen, Jonathan; Kaven, Joern; Williams, Colin F.; Phelps, Geoffrey; Faulds, James E.; Hinz, Nicholas H.; Calvin, Wendy M.; Siler, Drew; Robertson-Tait, Ann

2017-01-01

The proposed West Flank FORGE site is within the China Lake Naval Air Weapons Station (NAWS), China Lake, CA. The West Flank is west of the Coso geothermal field, an area of China Lake NAWS dominated by the Quaternary Coso volcanic field largely comprised of rhyolite domes and their volcaniclastic and epiclastic horizons. The largest dome flow complex, Sugarloaf Mountain, marks the northwestern margin of the geothermal field. The West Flank is situated due west of Sugarloaf. The geologic setting of the West Flank was determined from one deep well (83-11) drilled as a potential production hole in 2009. The bottom-hole temperature (BHT) of well 83-11 approaches 600 oF (315˚C), but flow tests demonstrate very low, non-commercial permeabilities. With the exception of the upper 600 feet of volcaniclastic alluvium, well 83-11 is completed in granitic basement. The West Flank possesses the primary attributes of a FORGE site: non-commercial permeability (<10-16m2), a 175˚ to 225˚C temperature range in crystalline rocks, and a location outside an existing geothermal fieldThe Coso Mountains host the Coso volcanic field and are within a right-releasing stepover between the dextral Airport Lake (ALF) and Little Lake fault zones (LLFZ) and the Wild Horse Mesa and Owens Valley faults. Two distinct fault populations have been identified at Coso: WNW-trending and antithetical, NE-trending strike-slip faults and N- to NNE-trending normal faults. These faults are both high permeability drilling targets at depth within the main (productive) geothermal field and they locally segment the field into distinct hydrothermal regimes. The West Flank may be segmented from the rest of the field by one such northerly trending fault. The overall minimum principal stress orientation in the main geothermal field varies from 103˚ to 108˚; however, the minimum horizontal principal stress in 83-11 is rotated to 081˚.

Growth history of Kilauea inferred from volatile concentrations in submarine-collected basalts

NASA Astrophysics Data System (ADS)

Coombs, Michelle L.; Sisson, Thomas W.; Lipman, Peter W.

2006-03-01

Major-element and volatile (H 2O, CO 2, S) compositions of glasses from the submarine flanks of Kilauea Volcano record its growth from pre-shield into tholeiite shield-stage. Pillow lavas of mildly alkalic basalt at 2600-1900 mbsl on the upper slope of the south flank are an intermediate link between deeper alkalic volcaniclastics and the modern tholeiite shield. Lava clast glasses from the west flank of Papau Seamount are subaerial Mauna Loa-like tholeiite and mark the contact between the two volcanoes. H 2O and CO 2 in sandstone and breccia glasses from the Hilina bench, and in alkalic to tholeiitic pillow glasses above and to the east, were measured by FTIR. Volatile saturation pressures equal sampling depths (10 MPa = 1000 m water) for south flank and Puna Ridge pillow lavas, suggesting recovery near eruption depths and/or vapor re-equilibration during down-slope flow. South flank glasses are divisible into low-pressure (CO 2 < 40 ppm, H 2O < 0.5 wt.%, S < 500 ppm), moderate-pressure (CO 2 < 40 ppm, H 2O > 0.5 wt.%, S 1000-1700 ppm), and high-pressure groups (CO 2 > 40 ppm, S > ˜1000 ppm), corresponding to eruption ≥ sea level, at moderate water depths (300-1000 m) or shallower but in disequilibrium, and in deep water (> 1000 m). Saturation pressures range widely in early alkalic to strongly alkalic breccia clast and sandstone glasses, establishing that early Kīlauea's vents spanned much of Mauna Loa's submarine flank, with some vents exceeding sea level. Later south flank alkalic pillow lavas expose a sizeable submarine edifice that grew concurrent with nearby subaerial alkalic eruptions. The onset of the tholeiitic shield stage is marked by extension of eruptions eastward and into deeper water (to 5500 m) during growth of the Puna Ridge. Subaerial and shallow water eruptions from earliest Kilauea show that it is underlain shallowly by Mauna Loa, implying that Mauna Loa is larger, and Kilauea smaller, than previously recognized.

Carbon stocks in mangroves, salt marshes, and salt barrens in Tampa Bay, Florida, USA: Vegetative and soil characteristics.

NASA Astrophysics Data System (ADS)

Moyer, R. P.; Radabaugh, K.; Chappel, A. R.; Powell, C.; Bociu, I.; Smoak, J. M.

2017-12-01

When compared to other terrestrial environments, coastal "blue carbon" habitats such as salt marshes and mangrove forests sequester disproportionately large amounts of carbon as standing plant biomass and sedimentary peat deposits. This study quantified total carbon stocks in vegetation and soil of 17 salt marshes, salt barrens, and mangrove forests in Tampa Bay, Florida, USA. The sites included natural, restored, and created wetlands of varying ages and degrees of anthropogenic impacts. The average vegetative carbon stock in mangrove forests was 60.1 ± 2.7 Mg ha-1. Mangrove forests frequently consisted of a few large Avicennia germinans trees with smaller, abundant Rhizophora mangle and/or Laguncularia racemosa trees. The average vegetative carbon stock was 11.8 ± 3.7 Mg ha-1 for salt marshes and 2.0 ± 1.2 Mg ha-1 for salt barrens. Vegetative carbon did not significantly differ between natural and newly created salt marsh habitats, indicating that mature restored wetlands can be included with natural wetlands for the calculation of vegetative carbon in coastal blue carbon assessments. Peat deposits were generally less than 50 cm thick and organic content rapidly decreased with depth in all habitats. Soil in this study was analyzed in 1 cm intervals; the accuracy of subsampling or binning soil into depth intervals of 2-5 cm was also assessed. In most cases, carbon stock values obtained from these larger sampling intervals were not statistically different from values obtained from sampling at 1 cm intervals. In the first 15 cm, soil in mangrove forests contained an average of 15.1% organic carbon by weight, salt marshes contained 6.5%, and salt barrens contained 0.8%. Total carbon stock in mangroves was 187.1±17.3 Mg ha-1, with 68% of that carbon stored in soil. Salt marshes contained an average of 65.2±25.3 Mg ha-1 (82% soil carbon) and salt barrens had carbon stocks of 21.4±7.4 Mg ha-1 (89% soil carbon). These values were much lower than global averages for carbon stocks in mangroves and salt marshes, likely due to Tampa Bay's location near the northern limit of mangrove habitat, recent habitat conversion from salt marshes to mangroves, young age of the restored wetlands, and proximity to intense coastal development. Vulnerability of these blue carbon habitats to climate change and sea-level rise will also be discussed.

Sonographic large fetal head circumference and risk of cesarean delivery.

PubMed

Lipschuetz, Michal; Cohen, Sarah M; Israel, Ariel; Baron, Joel; Porat, Shay; Valsky, Dan V; Yagel, Oren; Amsalem, Hagai; Kabiri, Doron; Gilboa, Yinon; Sivan, Eyal; Unger, Ron; Schiff, Eyal; Hershkovitz, Reli; Yagel, Simcha

2018-03-01

Persistently high rates of cesarean deliveries are cause for concern for physicians, patients, and health systems. Prelabor assessment might be refined by identifying factors that help predict an individual patient's risk of cesarean delivery. Such factors may contribute to patient safety and satisfaction as well as health system planning and resource allocation. In an earlier study, neonatal head circumference was shown to be more strongly associated with delivery mode and other outcome measures than neonatal birthweight. In the present study we aimed to evaluate the association of sonographically measured fetal head circumference measured within 1 week of delivery with delivery mode. This was a multicenter electronic medical record-based study of birth outcomes of primiparous women with term (37-42 weeks) singleton fetuses presenting for ultrasound with fetal biometry within 1 week of delivery. Fetal head circumference and estimated fetal weight were correlated with maternal background, obstetric, and neonatal outcome parameters. Elective cesarean deliveries were excluded. Multinomial regression analysis provided adjusted odds ratios for instrumental delivery and unplanned cesarean delivery when the fetal head circumference was ≥35 cm or estimated fetal weight ≥3900 g, while controlling for possible confounders. In all, 11,500 cases were collected; 906 elective cesarean deliveries were excluded. A fetal head circumference ≥35 cm increased the risk for unplanned cesarean delivery: 174 fetuses with fetal head circumference ≥35 cm (32%) were delivered by cesarean, vs 1712 (17%) when fetal head circumference <35 cm (odds ratio, 2.49; 95% confidence interval, 2.04-3.03). A fetal head circumference ≥35 cm increased the risk of instrumental delivery (odds ratio, 1.48; 95% confidence interval, 1.16-1.88), while estimated fetal weight ≥3900 g tended to reduce it (nonsignificant). Multinomial regression analysis showed that fetal head circumference ≥35 cm increased the risk of unplanned cesarean delivery by an adjusted odds ratio of 1.75 (95% confidence interval, 1.4-2.18) controlling for gestational age, fetal gender, and epidural anesthesia. The rate of prolonged second stage of labor was significantly increased when either the fetal head circumference was ≥35 cm or the estimated fetal weight ≥3900 g, from 22.7% in the total cohort to 31.0%. A fetal head circumference ≥35 cm was associated with a higher rate of 5-minute Apgar score ≤7: 9 (1.7%) vs 63 (0.6%) of infants with fetal head circumference <35 cm (P = .01). The rate among fetuses with an estimated fetal weight ≥3900 g was not significantly increased. The rate of admission to the neonatal intensive care unit did not differ among the groups. Sonographic fetal head circumference ≥35 cm, measured within 1 week of delivery, is an independent risk factor for unplanned cesarean delivery but not instrumental delivery. Both fetal head circumference ≥35 cm and estimated fetal weight ≥3900 g significantly increased the risk of a prolonged second stage of labor. Fetal head circumference measurement in the last days before delivery may be an important adjunct to estimated fetal weight in labor management. Copyright © 2018 Elsevier Inc. All rights reserved.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Huang, S. Y.; Yuan, Z. G.; Hadid, L. Z.

In the solar wind, power spectral density (PSD) of the magnetic field fluctuations generally follow the so-called Kolmogorov spectrum f {sup −5/3} in the inertial range, where the dynamics is thought to be dominated by nonlinear interactions between counter-propagating incompressible Alfvén wave parquets. These features are thought to be ubiquitous in space plasmas. The present study gives a new and more complex picture of magnetohydrodynamic (MHD) turbulence as observed in the terrestrial magnetosheath. The study uses three years of in situ data from the Cluster mission to explore the nature of the magnetic fluctuations at MHD scales in different locationsmore » within the magnetosheath, including flanks and subsolar regions. It is found that the magnetic field fluctuations at MHD scales generally have a PSD close to f {sup −1} (shallower than the Kolmogorov one f {sup −5/3}) down to the ion characteristic scale, which recalls the energy-containing scales of solar wind turbulence. The Kolmogorov spectrum is observed only away from the bow shock toward the flank and the magnetopause regions in 17% of the analyzed time intervals. Measuring the magnetic compressibility, it is shown that only a fraction (35%) of the observed Kolmogorov spectra was populated by shear Alfvénic fluctuations, whereas the majority of the events (65%) was found to be dominated by compressible magnetosonic-like fluctuations, which contrasts with well-known turbulence properties in the solar wind. This study gives a first comprehensive view of the origin of the f {sup −1} and the transition to the Kolmogorov inertial range; both questions remain controversial in solar wind turbulence.« less

Hydrocarbon potential of Central Monagas, Eastern Venezuela Basin, Venezuela

DOE Office of Scientific and Technical Information (OSTI.GOV)

Barrios, F.; Daza, J.; Iusco, G.

1996-08-01

The Central Monagas area is part of the foreland sub-basin located on the southern flank of the Eastern Venezuela Basin. The sedimentary column of the Central Monagas is at least 7500 in thick and consists of Mesozoic (Cretaceous) and Cenozoic rocks. Interpretations of 60 regional seismic sections have been integrated with data from 12 existing wells, which cover an area of 1200 km{sup 2}. From these interpretations, basin-wide structure and interval isopach maps were constructed in order to aid the depiction of the basin architecture and tectonic history. The sub-basin developed on the southern flank of the Eastern Venezuela Basinmore » is tightly linked to its evolution from a Mesozoic extensional regime into a Cenozoic compressional and strike-slip stage. The basin formed in the Middle Mesozoic by crustal extension of a rifting process. Regional northward tilting of the slab continued during the Late Cretaceous. Finally, the transpression of the Caribbean Plate during the Oligocene-Neogene induced the overprint of compressional deformation associated with the deposition of a foredeep wedge. Geochemical source rock analysis gave an average of 1.2 TOC, and R{sub o} of 0.66 indicating a mature, marine source. The modeling of the hydrocarbon generative history of the basin indicates that the oil migration started in the Middle Miocene, after the trap was formed. Analysis and mapping of reservoir rocks and seal rocks defined the effective area limits of these critical factors. The main play in the area is the extension of the Lower Oficina Formation which is the proven petroleum target in the Eastern Venezuela Basin.« less

GATE AND FLANKING FENCE AT ENTRANCE TO MEMORIAL WALK. VIEW ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

GATE AND FLANKING FENCE AT ENTRANCE TO MEMORIAL WALK. VIEW TO NORTHEAST. - Rock Island National Cemetery, Rock Island Arsenal, 0.25 mile north of southern tip of Rock Island, Rock Island, Rock Island County, IL

9. NORTH FLANK AND (WEST) REAR WITH REAR OF ADMINISTRATION ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

9. NORTH FLANK AND (WEST) REAR WITH REAR OF ADMINISTRATION BUILDING, LOOKING SOUTHEAST ACROSS GARDEN FROM TOWER GROVE SOUTH PORCH - Missouri Botanical Garden, Henry Shaw Townhouse, 2345 Tower Grove Avenue, Saint Louis, Independent City, MO

Explosive eruption, flank collapse and megatsunami at Tenerife ca. 170 ka.

PubMed

Paris, Raphaël; Bravo, Juan J Coello; González, María E Martín; Kelfoun, Karim; Nauret, François

2017-05-15

Giant mass failures of oceanic shield volcanoes that generate tsunamis potentially represent a high-magnitude but low-frequency hazard, and it is actually difficult to infer the mechanisms and dynamics controlling them. Here we document tsunami deposits at high elevation (up to 132 m) on the north-western slopes of Tenerife, Canary Islands, as a new evidence of megatsunami generated by volcano flank failure. Analyses of the tsunami deposits demonstrate that two main tsunamis impacted the coasts of Tenerife 170 kyr ago. The first tsunami was generated during the submarine stage of a retrogressive failure of the northern flank of the island, whereas the second one followed the debris avalanche of the subaerial edifice and incorporated pumices from an on-going ignimbrite-forming eruption. Coupling between a massive retrogressive flank failure and a large explosive eruption represents a new type of volcano-tectonic event on oceanic shield volcanoes and a new hazard scenario.

β-Sheet Containment by Flanking Prolines: Molecular Dynamic Simulations of the Inhibition of β-Sheet Elongation by Proline Residues in Human Prion Protein

PubMed Central

Shamsir, Mohd S.; Dalby, Andrew R.

2007-01-01

Previous molecular dynamic simulations have reported elongation of the existing β-sheet in prion proteins. Detailed examination has shown that these elongations do not extend beyond the proline residues flanking these β-sheets. In addition, proline has also been suggested to possess a possible structural role in preserving protein interaction sites by preventing invasion of neighboring secondary structures. In this work, we have studied the possible structural role of the flanking proline residues by simulating mutant structures with alternate substitution of the proline residues with valine. Simulations showed a directional inhibition of elongation, with the elongation progressing in the direction of valine including evident inhibition of elongation by existing proline residues. This suggests that the flanking proline residues in prion proteins may have a containment role and would confine the β-sheet within a specific length. PMID:17172295

Jasper Seamount: seven million years of volcanism

USGS Publications Warehouse

Pringle, M.S.; Staudigel, H.; Gee, J.

1991-01-01

Jasper Seamount is a young, mid-sized (690 km3) oceanic intraplate volcano located about 500 km west-southwest of San Diego, California. Reliable 40Ar/39Ar age data were obtained for several milligram-sized samples of 4 to 10 Ma plagioclase by using a defocused laser beam to clean the samples before fusion. Gee and Staudigel suggested that Jasper Seamount consists of a transitional to tholeiitic shield volcano formed by flank transitional series lavas, overlain by flank alkalic series lavas and summit alkalic series lavas. Twenty-nine individual 40Ar/39Ar laser fusion analyses on nine samples confirm the stratigraphy: 10.3-10.0 Ma for the flank transitional series, 8.7-7.5 Ma for the flank alkalic series, and 4.8-4.1 Ma for the summit alkalic series. The alkalinity of the lavas clearly increases with time, and there appear to be 1 to 3 m.y. hiatuses between each series. -from Authors

Physical properties of lava flows on the southwest flank of Tyrrhena Patera, Mars

NASA Technical Reports Server (NTRS)

Crown, David A.; Porter, Tracy K.; Greeley, Ronald

1991-01-01

Tyrrhena Patera (TP) (22 degrees S, 253.5 degrees W), a large, low-relief volcano located in the ancient southern highlands of Mars, is one of four highland paterae thought to be structurally associated with the Hellas basin. The highland paterae are Hesperian in age and among the oldest central vent volcanoes on Mars. The morphology and distribution of units in the eroded shield of TP are consistent with the emplacement of pyroclastic flows. A large flank unit extending from TP to the SW contains well-defined lava flow lobes and leveed channels. This flank unit is the first definitive evidence of effusive volcanic activity associated with the highland paterae and may include the best preserved lava flows observed in the Southern Hemisphere of Mars. Flank flow unit averages, channelized flow, flow thickness, and yield strength estimates are discussed. Analysis suggests the temporal evolution of Martian magmas.

Probe Measurements of Parameters of Streamers of Nanosecond Frequency Crown Discharge

NASA Astrophysics Data System (ADS)

Ponizovskiy, A. Z.; Gosteev, S. G.

2017-12-01

Investigations of the parameters of single streamers of nanosecond frequency corona discharge, creating a voluminous low-temperature plasma in extended coaxial electrode systems, are performed. Measurements of the parameters of streamers were made by an isolated probe situated on the outer grounded electrode. Streamers were generated under the action of voltage pulses with a front of 50-300 ns, duration of 100-600 ns, and amplitude up to 100 kV at the frequency of 50-1000 Hz. The pulse voltage, the total current of the corona, current per probe, and glow in the discharge gap were recorded in the experiments. It was established that, at these parameters of pulse voltage, streamers propagate at an average strength of the electric field of 4-10 kV/cm. Increasing the pulse amplitude leads to an increase in the number of streamers hitting the probe, an increase in the average charge of the head of a streamer, and, as a consequence, an increase in the total streamer current and the energy introduced into the gas. In the intervals up to 3 cm, streamer breakdown at an average field strength of 5-10 kV/cm is possible. In longer intervals, during the buildup of voltage after generation of the main pulse, RF breakdown is observed at E av ≈ 4 kV/cm.

Submarine geology of Hana Ridge and Haleakala Volcano's northeast flank, Maui

USGS Publications Warehouse

Eakins, Barry W.; Robinson, Joel E.

2006-01-01

We present a morphostructural analysis of the submarine portions of Haleakala Volcano and environs, based upon a 4-year program of geophysical surveys and submersible explorations of the underwater flanks of Hawaiian volcanoes that was conducted by numerous academic and governmental research organizations in Japan and the U.S. and funded primarily by the Japan Agency for Marine–Earth Science and Technology. A resulting reconnaissance geologic map features the 135-km-long Hana Ridge, the 3000 km2 Hana slump on the volcano's northeast flank, and island-surrounding terraces that are the submerged parts of volcanic shields. Hana Ridge below 2000 m water depth exhibits the lobate morphology typical of the subaqueously erupted parts of Hawaiian rift zones, with some important distinctions: namely, subparallel crestlines, which we propose result from the down-rift migration of offsets in the dike intrusion zone, and an amphitheater at its distal toe, where a submarine landslide has embayed the ridge tip. Deformation of Haleakala's northeast flank is limited to that part identified as the Hana slump, which lies downslope from the volcano's submerged shield, indicating that flank mobility is also limited in plan, inconsistent with hypothesized volcanic spreading driven by rift-zone dilation. The leading edge of the slump has transverse basins and ridges that resemble the thrust ramps of accretionary prisms, and we present a model to describe the slump's development that emphasizes the role of coastally generated fragmental basalt on gravitational instability of Haleakala's northeast flank and that may be broadly applicable to other ocean-island slumps.

Influence of flanking sequences on presentation efficiency of a CD8+ cytotoxic T-cell epitope delivered by parvovirus-like particles.

PubMed

Rueda, P; Morón, G; Sarraseca, J; Leclerc, C; Casal, J I

2004-03-01

We have previously developed an antigen-delivery system based on hybrid recombinant porcine parvovirus-like particles (PPV-VLPs) formed by the self-assembly of the VP2 protein of PPV carrying a foreign epitope at its N terminus. In this study, different constructs were made containing a CD8(+) T-cell epitope of chicken ovalbumin (OVA) to analyse the influence of the sequence inserted into VP2 on the correct processing of VLPs by antigen-presenting cells. We analysed the presentation of the OVA epitope inserted without flanking sequences or with either different natural flanking sequences or with the natural flanking sequences of a CD8(+) T-cell epitope from the lymphocytic choriomeningitis virus nucleoprotein, and as a dimer with or without linker sequences. All constructs were studied in terms of level of expression, assembly of VLPs and ability to deliver the inserted epitope into the MHC I pathway. The presentation of the OVA epitope was considerably improved by insertion of short natural flanking sequences, which indicated the relevance of the flanking sequences on the processing of PPV-VLPs. Only PPV-VLPs carrying two copies of the OVA epitope linked by two glycines were able to be properly processed, suggesting that the introduction of flexible residues between the two consecutive OVA epitopes may be necessary for the correct presentation of these dimers by PPV-VLPs. These results provide information to improve the insertion of epitopes into PPV-VLPs to facilitate their processing and presentation by MHC class I molecules.

Edifice strength and magma transfer modulation at Piton de la Fournaise volcano

NASA Astrophysics Data System (ADS)

Peltier, A.; Got, J.; Staudacher, T.; Kowalski, P.; Boissier, P.

2013-12-01

From 2003 to 2007, eruptive activity at Piton de la Fournaise followed cycles, comprising many summit/proximal eruptions and finishing by a distal eruption. GPS measurements evidenced striking asymmetric deformation between its western and eastern flanks. Horizontal displacements recorded during inter-distal periods showed a characteristic amplitude at the top of the eastern flank. Displacements recorded at the base of the summit cone showed a bimodal distribution, with low amplitudes during inter-distal periods and large ones during distal eruptions. To account for displacement asymmetry, characteristic amplitude and large flank displacement, we modeled the volcanic edifice using a Drücker-Prager elasto-plastic rheology. Friction angles of 15° and >30° were needed to model the displacements respectively during distal eruptions and inter-distal periods; this change shows that strain weakening occurred during distal events. Large plastic displacement that occurred in the eastern flank during distal eruptions relaxed the horizontal elastic stress accumulated during inter-distal periods; it triggered summit deflation, horizontal magma transfer and distal flank eruption, and reset the eruptive cycle. Our elasto-plastic models also show that simple source geometries may induce large eastern flank displacements that would be explained by a complex geometry in a linear elastic edifice. Magma supply is often thought to control volcano's eruptive activity, with surface deformation reflecting changes in magma supply rate, the volcano's response being linear. Our results bring some evidences that on Piton de la Fournaise time-space discretization of magma transfer may be the result of the edifice's non-linear response, rather than changes in magma supply.

Non-invasive fat reduction of the flanks using a new cryolipolysis applicator and overlapping, two-cycle treatments

PubMed Central

Bernstein, Eric F; Bloom, Jason D; Basilavecchio, Lisa D; Plugis, Jessica M

2014-01-01

Background and Objectives A sharply contoured cryolipolysis vacuum applicator was developed to improve fit and tissue draw in the abdomen and flanks to better accommodate a range of body types and a variety of treatment sites. This study was carried out to evaluate the safety and efficacy of the new applicator for treatment of flank fat (“love handles”). Study Design/Materials and Methods A cryolipolysis vacuum applicator with a sharply contoured cup and curved cooling plates was used to treat 20 flanks. Two treatment cycles were delivered sequentially to each flank (60-minute cycle at a Cooling Intensity Factor of 41.6). Efficacy was evaluated 12 weeks post-treatment by physicians performing blinded, independent review of clinical photographs. Safety was assessed by the treating physician monitoring subjects for side effects and adverse events. Results Four blinded, independent physician reviewers properly identified the pre- and post-treatment photographs 94.4% of the time. Improvement was scored from 0 (none) to 10 (complete) and showed an average 4.3 point (43%) improvement. Side-effects were limited to erythema, edema, bruising, and numbness or tingling at the treatment site, and resolved without treatment. Conclusions Multiple treatment cycles from a new improved-fit cryolipolysis applicator are safe and effective for reduction of flank fat bulges. A high degree of improvement was reported by blinded, physician evaluation of standardized photographs. Laser Surg. Med. 46:731–735, 2014. © 2014 The Authors. Lasers in Surgery and Medicine published by Wiley Periodicals, Inc. PMID:25395266

Spontaneous ruptured pheochromocytoma: an unusual case report and literature review.

PubMed

Jee, Ye Seob

2017-09-01

Ruptured pheochromocytoma is a rare disease. Its mortality rate is up to 31%-50%. Proper management of ruptured pheochromocytoma remains unclear. A 44-year-old male patient visited our Emergency Department and presented with abrupt onset of left flank pain. His blood pressure was 190/140 mmHg with purse rate of 130 beats/min. CT scan showed 8.1 × 5.6-cm-sized heterogeneously mass with rupture on the left retroperitoneal space and active bleeding. His symptom of abdominal pain was aggravated. Follow-up laboratory analysis revealed elevated WBC count and decreased hemoglobin 2 hours after admission. Emergency laparotomy was performed. We resected the ruptured left retroperitoneal mass and hemostasis. Pathologic exams revealed adrenal pheochromocytoma with rupture. Although our patient was alive, according to literature review, mortality rate of emergency operation without medical management is higher than elective operation after blood pressure control with either medical or interventional methods such as transcatheter arterial embolization.

Xanthogranulomatous cystitis: a challenging imitator of bladder cancer.

PubMed

Ekici, Sinan; Dogan Ekici, Isin; Ruacan, Sevket; Midi, Ahmet

2010-06-29

Xanthogranulomatous cystitis is a rare, benign, chronic inflammatory disease of the bladder, mimicking malignancy with unknown etiology. Herein, we report a 57-year-old man who presented with pollakiuria, nocturia, dysuria, left flank pain, and a palpable mass on the right lower abdomen. Computerized tomography demonstrated an obstructing 10-mm stone in the lower third of the left ureter and a 6-cm solid mass on the right at the anterolateral wall of the bladder. The mass presented local perivesical invasion at the anterolateral side. Cystouretroscopy revealed a mass protruding into the bladder cavity with edematous smooth surface. Frozen section analysis of the partial cystectomy specimen could not rule out malignancy. Therefore, radical cystoprostatectomy and ureterolithotomy were performed. Histologically, fibrosis, numerous plasma cells, eosinophils, and, immunohistochemically, CD68-positive epithelioid and foamy macrophages were detected. Localized prostatic adenocarcinoma was also found. The present case of xanthogranulomatous cystitis is the 23rd to be reported in the world literature.

Dissolved sulfide distributions in the water column and sediment pore waters of the Santa Barbara Basin

USGS Publications Warehouse

Kuwabara, J.S.; VanGeen, A.; McCorkle, D.C.; Bernhard, J.M.

1999-01-01

Dissolved sulfide concentrations in the water column and in sediment pore waters were measured by square-wave voltammetry (nanomolar detection limit) during three cruises to the Santa Barbara Basin in February 1995, November-December 1995, and April 1997. In the water column, sulfide concentrations measured outside the basin averaged 3 ?? 1 nM (n = 28) in the 0 to 600 m depth range. Inside the basin, dissolved sulfides increased to reach values of up to 15 nM at depths >400 m. A suite of box cores and multicores collected at four sites along the northeastern flank of the basin showed considerable range in surficial (400 ??M at 10 cm. Decreases in water-column nitrate below the sill depth indicate nitrate consumption (-55 to -137 ??mole m-2 h-1) similar to nearby Santa Monica Basin. Peaks in pore-water iron concentrations were generally observed between 2 and 5 cm depth with shallowest peaks at the 590 m site. These observations, including observations of the benthic microfauna, suggest that the extent to which the sulfide flux, sustained by elevated pore-water concentrations, reaches the water column may be modulated by the abundance of sulfide-oxidizing bacteria in addition to iron redox and precipitation reactions.

Robotic retroperitoneal partial nephrectomy: a step-by-step guide.

PubMed

Ghani, Khurshid R; Porter, James; Menon, Mani; Rogers, Craig

2014-08-01

To describe a step-by-step guide for successful implementation of the retroperitoneal approach to robotic partial nephrectomy (RPN) PATIENTS AND METHODS: The patient is placed in the flank position and the table fully flexed to increase the space between the 12th rib and iliac crest. Access to the retroperitoneal space is obtained using a balloon-dilating device. Ports include a 12-mm camera port, two 8-mm robotic ports and a 12-mm assistant port placed in the anterior axillary line cephalad to the anterior superior iliac spine, and 7-8 cm caudal to the ipsilateral robotic port. Positioning and port placement strategies for successful technique include: (i) Docking robot directly over the patient's head parallel to the spine; (ii) incision for camera port ≈1.9 cm (1 fingerbreadth) above the iliac crest, lateral to the triangle of Petit; (iii) Seldinger technique insertion of kidney-shaped balloon dilator into retroperitoneal space; (iv) Maximising distance between all ports; (v) Ensuring camera arm is placed in the outer part of the 'sweet spot'. The retroperitoneal approach to RPN permits direct access to the renal hilum, no need for bowel mobilisation and excellent visualisation of posteriorly located tumours. © 2014 The Authors. BJU International © 2014 BJU International.

Effect of Novel, School-Based High-Intensity Interval Training (HIT) on Cardiometabolic Health in Adolescents: Project FFAB (Fun Fast Activity Blasts) - An Exploratory Controlled Before-And-After Trial

PubMed Central

2016-01-01

Background Low-volume high-intensity interval training holds promise for cardiometabolic health promotion in adolescents, but sustainable interventions must be practical and engaging. We examined the effect of a school-based multi-activity low-volume high-intensity interval training intervention on adolescents’ cardiometabolic health. Methods In an exploratory controlled before-and-after design, 101 adolescents (mean age ± standard deviation [SD] 14.0 ± 0.3 years) were recruited from four schools; two were designated as intervention sites (n = 41), and two as control (n = 60). The intervention comprised 4 to 7 repetitions of 45 s maximal effort exercise (basketball, boxing, dance and soccer drills) interspersed with 90-s rest, thrice weekly for 10 weeks. Outcomes were non-fasting blood lipids and glucose, waist circumference, high sensitivity C-reactive protein, resting blood pressure, physical activity, twenty-metre shuttle-run test performance and carotid artery intima-media thickness. The difference in the change from baseline (intervention minus control) was estimated for each outcome. Using magnitude-based inferences, we calculated the probability that the true population effect was beneficial, trivial, and harmful against a threshold for the minimum clinically important difference of 0.2 between-subject SDs. Results and Discussion Mean (± SD) attendance for the intervention (expressed as percentage of available intervention sessions [n = 30]) was 77 ± 13%. Post-intervention, there were likely beneficial effects for triglycerides (-26%; 90% confidence interval -46% to 0%), waist circumference (-3.9 cm; -6.1 cm to -1.6 cm) and moderate-to-vigorous physical activity (+16 min; -5 to 38 min), and a possibly beneficial effect for twenty-metre shuttle-run test performance (+5 shuttles; -1 to 11 shuttles) in intervention participants (vs controls). The role of elevated triglycerides and waist circumference in cardiovascular disease and metabolic syndrome development underlines the importance of our findings. We also demonstrated that school-based low-volume high-intensity interval training can be delivered as intended, thus representing a novel and scalable means of improving aspects of adolescents’ cardiometabolic health. Trial Registration ClinicalTrials.gov NCT02626767 PMID:27486660

Effect of Novel, School-Based High-Intensity Interval Training (HIT) on Cardiometabolic Health in Adolescents: Project FFAB (Fun Fast Activity Blasts) - An Exploratory Controlled Before-And-After Trial.

PubMed

Weston, Kathryn L; Azevedo, Liane B; Bock, Susan; Weston, Matthew; George, Keith P; Batterham, Alan M

2016-01-01

Low-volume high-intensity interval training holds promise for cardiometabolic health promotion in adolescents, but sustainable interventions must be practical and engaging. We examined the effect of a school-based multi-activity low-volume high-intensity interval training intervention on adolescents' cardiometabolic health. In an exploratory controlled before-and-after design, 101 adolescents (mean age ± standard deviation [SD] 14.0 ± 0.3 years) were recruited from four schools; two were designated as intervention sites (n = 41), and two as control (n = 60). The intervention comprised 4 to 7 repetitions of 45 s maximal effort exercise (basketball, boxing, dance and soccer drills) interspersed with 90-s rest, thrice weekly for 10 weeks. Outcomes were non-fasting blood lipids and glucose, waist circumference, high sensitivity C-reactive protein, resting blood pressure, physical activity, twenty-metre shuttle-run test performance and carotid artery intima-media thickness. The difference in the change from baseline (intervention minus control) was estimated for each outcome. Using magnitude-based inferences, we calculated the probability that the true population effect was beneficial, trivial, and harmful against a threshold for the minimum clinically important difference of 0.2 between-subject SDs. Mean (± SD) attendance for the intervention (expressed as percentage of available intervention sessions [n = 30]) was 77 ± 13%. Post-intervention, there were likely beneficial effects for triglycerides (-26%; 90% confidence interval -46% to 0%), waist circumference (-3.9 cm; -6.1 cm to -1.6 cm) and moderate-to-vigorous physical activity (+16 min; -5 to 38 min), and a possibly beneficial effect for twenty-metre shuttle-run test performance (+5 shuttles; -1 to 11 shuttles) in intervention participants (vs controls). The role of elevated triglycerides and waist circumference in cardiovascular disease and metabolic syndrome development underlines the importance of our findings. We also demonstrated that school-based low-volume high-intensity interval training can be delivered as intended, thus representing a novel and scalable means of improving aspects of adolescents' cardiometabolic health. ClinicalTrials.gov NCT02626767.

DETAIL OF FENCE FLANKING GATE AT ENTRANCE TO MEMORIAL WALK. ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

DETAIL OF FENCE FLANKING GATE AT ENTRANCE TO MEMORIAL WALK. VIEW TO NORTHEAST. - Rock Island National Cemetery, Rock Island Arsenal, 0.25 mile north of southern tip of Rock Island, Rock Island, Rock Island County, IL

Transabdominal ultrasonographic appearance of the gastrointestinal viscera of healthy camels (Camelus dromedaries).

PubMed

Tharwat, Mohamed; Al-Sobayil, Fahd; Ali, Ahmed; Buczinski, Sébastien

2012-10-01

The purpose of this study was to describe the ultrasonographic picture of the gastrointestinal tract in healthy camels (Camelus dromedarius). For this purpose, 22 camels were examined. The rumen and its glandular sacs were filling most of the left side of the abdomen. The rumen wall was smooth and echogenic. The ventral part of the reticulum could be best imaged in 17 (77%) camels from the left and right paramedian region just behind to the sternal pad. The reticulum in these animals had a thick wall (1.17±0.27 cm) that appeared as a half-moon-shaped structure with a biphasic contraction. The omasum was best viewed through the right 8th to 6th intercostal spaces in 18 (82%) camels. In the remaining 4 (18%), it was visualized through four consecutive intercostal spaces (right 9th to 6th). It had a wall thickness of 1.1±0.7 cm and a transverse diameter of 8.74±3.4 cm. The abomasum could be best visualized from the right 9th and 8th intercostal spaces in 14 (64%) camels, while it was observed in the 9th intercostal space in 3 (14%) animals and in the 8th and 7th intercostal space in 5 (22%) camels. Small intestinal structures were best seen low in the right paralumbar fossa. It was thin-walled (0.43±0.14 cm) and had a diameter of 2.62±0.47 cm. The cecum was imaged chiefly in the caudal right flank. It was thin-walled (0.37±0.05 cm), had a diameter of 13.8±1.6 cm. The proximal loop of the large colon appeared as thick, echogenic, continuous and slightly curved lines. It was thin-walled (0.51±0.08 cm) and had a diameter of 3.5±0.8 cm. The spiral colon was confined in all camels to the caudal ventral half of the abdomen. It appeared as structures with thick echoic lateral walls with a number of echogenic arched lines next to each other. Free peritoneal fluid pockets were imaged in two locations in 19 (86%) camels. Ultrasound-guided abdominocentesis was successful in 15 (68%) of the examined camels. This study provides the ultrasonographic appearance of the normal gastrointestinal tract in healthy camels that could be used as a reference for the interpretation of suspected digestive abnormalities. Copyright © 2012. Published by Elsevier India Pvt Ltd.

The volcanotectonic structures of Ascraeus Mons

NASA Astrophysics Data System (ADS)

Byrne, Paul; van Wyk de Vries, Benjamin; Murray, John; Troll, Valentin

2010-05-01

Ascraeus Mons is the tallest of three large volcanoes situated to the NE of the Tharsis Rise and aligned parallel to a NE-SW regional structural trend. With a vertical relief of 14.9 km and an E-W diameter of 400 km, the main shield has a convex-upward morphology and a summit plateau, whilst significantly younger lava rift aprons issue from expansive embayments on its lower flanks onto the surrounding plains. The volcano hosts several types of well-preserved surface structures, and so has served as a basis for understanding Martian volcano geodynamics. Previous studies have not incorporated the full set of structures on Ascraeus Mons, however, and have been limited by photogeological data of lower resolution than that available today. We have used a GIS of MOLA, HRSC, and CTX data to map the spatial and temporal distributions of the most pronounced structures on Ascraeus Mons — its summit calderas, flank terraces, arcuate graben, and pit craters — to develop as comprehensive an evolutionary sequence for this volcano as possible. We summarise our mapping results here. · The 55-km wide caldera complex consists of at least three NE-SW-aligned depressions, with a possible fourth caldera on the periphery. Depths range from 818 m for the shallowest caldera to 3,110 m for the deepest. Whilst most lavas on the volcano are summit-derived, even the latest flows are cut by post-caldera formation subsidence and fracturing. · Flank terraces, topographically subtle outward-verging, convex-upward structures, encircle Ascraeus Mons in an imbricate, fish-scale pattern. 142 terraces in total extend from immediately below the summit to the basal plains, but do not occur on the rift aprons. The mean circumferential length for terraces is 31.9 km, though terraces over 60 km long lie on the NW and SE flanks. · Arcuate graben crosscut the NW flanks and surrounding plains, and extend for ca. 90° concentric to the volcano. These structures vary in width from 400 m to 1,200 m, and are between 10 and 100 m deep. They are shallower and more laterally continuous than the pit troughs observed elsewhere on the flanks (described below), although pits do occur nearby, and in places are laterally contiguous with graben. · Pit craters are circular or ovoid rimless depressions, between 190 and 3,000 m in diameter and several 100s m deep, that are superposed upon the latest lavas on the volcano. Rows of pits form crater chains, whilst chains can merge to form troughs. We mapped 4,166 pits across the volcano, trending circumferential near the summit to radial low on the NE and SW flanks; here, chains and troughs coalesce to form the embayments. Caldera formation is likely the result of evacuation of an underlying magma chamber. Recent work indicates that flank terraces are compressive structures, formed by upper flank shortening of a volcano as it flexes the supporting lithosphere; flexure could also account for the arcuate graben concentric to the shield. In contrast, pit craters are probably extensional structures, formed by collapse into subsurface voids. A developmental sequence for Ascraeus Mons, therefore, needs to account for the disparate formation mechanisms proposed for these spatially coincident structures. Incorporating our findings with earlier studies of this volcano, we conclude that Ascraeus has experienced a history of rapid shield building, coeval with magma chamber evacuation, which initiated sustained lithospheric flexure and led to the formation of flank terraces and concentric graben. Main shield construction was followed by a period of repose before rift apron volcanism initiated on the lower flanks along the NE-SW regional lineament. Ultimately, the dominant tectonic regime upon the volcano's flanks changed from compressional to extensional, resulting in the development of pit craters. This model may help establish a framework for understanding the volcanotectonic histories of large shields across Mars.

Identification and genetic mapping of PmAF7DS a powdery mildew resistance gene in bread wheat (Triticum aestivum L.).

PubMed

Bheema Lingeswara Reddy, I N; Chandrasekhar, K; Zewdu, Y; Dinoor, A; Keller, B; Ben-David, R

2016-06-01

Gene PmAF7DS confers resistance to wheat powdery mildew (isolate Bgt#211 ); it was mapped to a 14.6-cM interval ( Xgwm350 a- Xbarc184 ) on chromosome 7DS. The flanking markers could be applied in MAS breeding. Wheat powdery mildew (Pm) is caused by the biotrophic pathogen Blumeria graminis tritici (DC.) (Bgt). An ongoing threat of breakdown of race-specific resistance to Pm requires a continuous effort to discover new alleles in the wheat gene pool. Developing new cultivars with improved disease resistance is an economically and environmentally safe approach to reduce yield losses. To identify and characterize genes for resistance against Pm in bread wheat we used the (Arina × Forno) RILs population. Initially, the two parental lines were screened with a collection of 61 isolates of Bgt from Israel. Three Pm isolates Bgt#210 , Bgt#211 and Bgt#213 showed differential reactions in the parents: Arina was resistant (IT = 0), whereas Forno was moderately susceptible (IT = -3). Isolate Bgt#211 was then used to inoculate the RIL population. The segregation pattern of plant reactions among the RILs indicates that a single dominant gene controls the conferred resistance. A genetic map of the region containing this gene was assembled with DNA markers and assigned to the 7D physical bin map. The gene, temporarily designated PmAF7DS, was located in the distal region of chromosome arm 7DS. The RILs were also inoculated with Bgt#210 and Bgt#213. The plant reactions to these isolates showed high identity with the reaction to Bgt#211, indicating the involvement of the same gene or closely linked, but distinct single genes. The genomic location of PmAF7DS, in light of other Pm genes on 7DS is discussed.

Vibronic spectra of Cu(2+) in ZnTe

NASA Technical Reports Server (NTRS)

Volz, M. P.; Su, C.-H.; Lehoczky, S. L.; Szofran, F. R.

1992-01-01

Infrared-absorption spectra of substitutional Cu(2+) ions in ZnTe have been measured at 4.6 K. Several distinct absorption peaks are observed between 800 and 2000/cm. Absorption peaks at 1002 and 1069/cm are identified as zero-phonon lines arising from 2T2-2E transitions. Between 1069 and 2000/cm, several sets of sharp absorption lines are seen to recur regularly at an interval of 210/cm, corresponding to the LO phonon energy. Within each set distinct vibronic sidebands that cannot be identified with critical-point energies of TA, LA, TO or LO phonon modes are observed. A dynamic Jahn-Teller effect, involving coupling between a single-phonon mode and the electronic states of the 2E level, is proposed to account for the observed spectra.

An Effectiveness Trial of Contingency Management in a Felony Preadjudication Drug Court

PubMed Central

Marlowe, Douglas B; Festinger, David S; Dugosh, Karen L; Arabia, Patricia L; Kirby, Kimberly C

2008-01-01

This study evaluated a contingency management (CM) program in a drug court. Gift certificates for compliance were delivered at 4- to 6-week intervals (total value  =  $390.00). Participants in one condition earned gift certificates that escalated by $5.00 increments. Participants in a second condition began earning higher magnitude gift certificates, and the density of reinforcement was gradually decreased. No main effects of CM were detected, which appears to be attributable to a ceiling effect from the intensive contingencies already delivered in the drug court and the low density of reinforcement. Preplanned interaction analyses suggested that participants with more serious criminal backgrounds might have performed better in the CM conditions. This suggests that CM programs may be best suited for more incorrigible drug offenders. PMID:19192860

Detection of the 2165 Inverse Centimeter (4.619 Micron) XCN Band in the Spectrum of L1551 IRS 5

NASA Technical Reports Server (NTRS)

Tegler, Stephen C.; Weintraub, David A.; Allamandola, Louis J.; Sandford, Scott A.; Rettig, Terrence W.; Campins, Humberto

1993-01-01

We report the detection of a broad absorption band at 2165 cm (4.619 microns) in the spectrum of L1551 IRS 5. New laboratory results over the 2200-2100 /cm wavenumber interval (4.55-4.76 microns), performed with realistic interstellar ice analogs, suggest that this feature is due to a CN-containing compound. We will refer to this compound as XCN. We also confirm the presence of frozen CO (both in nonpolar and polar matrices) through absorption bands at 2140 /cm (4.67 microns) and 2135 /cm (4.68 microns). The relative abundance of solid-state CO to frozen H2O is approx. 0.13 while the abundance of XCN seems comparable to that of frozen CO.

Longitudinal progesterone profiles in baleen from female North Atlantic right whales (Eubalaena glacialis) match known calving history

PubMed Central

Hunt, Kathleen E.; Lysiak, Nadine S.; Moore, Michael J.; Rolland, Rosalind M.

2016-01-01

Reproduction of mysticete whales is difficult to monitor, and basic parameters, such as pregnancy rate and inter-calving interval, remain unknown for many populations. We hypothesized that baleen plates (keratinous strips that grow downward from the palate of mysticete whales) might record previous pregnancies, in the form of high-progesterone regions in the sections of baleen that grew while the whale was pregnant. To test this hypothesis, longitudinal baleen progesterone profiles from two adult female North Atlantic right whales (Eubalaena glacialis) that died as a result of ship strike were compared with dates of known pregnancies inferred from calf sightings and post-mortem data. We sampled a full-length baleen plate from each female at 4 cm intervals from base (newest baleen) to tip (oldest baleen), each interval representing ∼60 days of baleen growth, with high-progesterone areas then sampled at 2 or 1 cm intervals. Pulverized baleen powder was assayed for progesterone using enzyme immunoassay. The date of growth of each sampling location on the baleen plate was estimated based on the distance from the base of the plate and baleen growth rates derived from annual cycles of stable isotope ratios. Baleen progesterone profiles from both whales showed dramatic elevations (two orders of magnitude higher than baseline) in areas corresponding to known pregnancies. Baleen hormone analysis shows great potential for estimation of recent reproductive history, inter-calving interval and general reproductive biology in this species and, possibly, in other mysticete whales. PMID:27293762

A SOUTHERN ATLAS OF GALACTIC HYDROGEN (THE REGION 0 degrees \\< Q \\< 12 degrees, -3 degrees >/ B -17 degrees)

NASA Astrophysics Data System (ADS)

Franco, M. L.; Poppel, W. G. L.; Vieira, E. R.

1987-05-01

RESUMEN Se presentan datos observacionales en la lfnea de 21-cm del hidr6geno neutro obtenidos con el radiotelescopio de 30-rn del lAR. Las observaciones cubren la regi6n 00 < Q 120, 30 > b - 170 en intervalos dell0 tanto en Q como en b. El intervalo de velocidades radiales se extiende desde -100 km 1 hasta + 100 km 1 con una resolucj6n cinematica de 2km 1 ABSTRACT We present observational data in the 21-rn line of neutral hydrogen, which have been obtained with the 30-rn dish of the lAR. The observations cover 00 < Q 120, 30 > b > 170 at intervals of 10 in both Qand b. The radial velocity interval extends from -100 to + 100km 1 with a kinematical resolution of 2 km s- . Key words: GALAXY-STRUCTURE - RADIO LINES-21-cm

High-resolution mapping and genetic characterization of the Lazy-2 gravitropic mutant of tomato

NASA Technical Reports Server (NTRS)

Behringer, F. J.; Lomax, T. L.

1999-01-01

Mutation of the Lazy-2 (Lz-2) gene in tomato (Lycopersicon esculentum mill.) produces a phytochrome-dependent reversal of shoot gravitropism, providing a unique genetic resource for investigating how signals from light modulate gravitropism. We mapped the Lz-2 gene using RFLPs and a PCR-based technique to assess the feasibility of positional cloning. Analysis of a 1338 plant backcross population between L. esculentum and L. pennellii placed Lz-2 within a 1.2 cM interval on chromosome 5, 0.4 cM from TG504-CT201A interval. The inabililty to resolve these markers indicates that Lz-2 resides in a centromeric region in which recombination is highly suppressed. Lazy-2 is tightly linked to but does not encode the gene for ACC4, an enzyme involved in ethylene biosynthesis. We also observed that Lz-2 is partially dominant under certain conditions and stages of development.

Conformation of Tax-response elements in the human T-cell leukemia virus type I promoter.

PubMed

Cox, J M; Sloan, L S; Schepartz, A

1995-12-01

HTLV-I Tax is believed to activate viral gene expression by binding bZIP proteins (such as CREB) and increasing their affinities for proviral TRE target sites. Each 21 bp TRE target site contains an imperfect copy of the intrinsically bent CRE target site (the TRE core) surrounded by highly conserved flanking sequences. These flanking sequences are essential for maximal increases in DNA affinity and transactivation, but they are not, apparently, contacted by protein. Here we employ non-denaturing gel electrophoresis to evaluate TRE conformation in the presence and absence of bZIP proteins, and to explore the role of DNA conformation in viral transactivation. Our results show that the TRE-1 flanking sequences modulate the structure and modestly increase the affinity of a CREB bZIP peptide for the TRE-1 core recognition sequence. These flanking sequences are also essential for a maximal increase in stability of the CREB-DNA complex in the presence of Tax. The CRE-like TRE core and the TRE flanking sequences are both essential for formation of stable CREB-TRE-1 and Tax-CREB-TRE-1 complexes. These two DNA segments may have co-evolved into a unique structure capable of recognizing Tax and a bZIP protein.

The Deep Subsurface Biosphere in Igneous Ocean Crust: Frontier Habitats for Microbiological Exploration

PubMed Central

Edwards, Katrina J.; Fisher, Andrew T.; Wheat, C. Geoffrey

2011-01-01

We discuss ridge flank environments in the ocean crust as habitats for subseafloor microbial life. Oceanic ridge flanks, areas far from the magmatic and tectonic influence of seafloor spreading, comprise one of the largest and least explored microbial habitats on the planet. We describe the nature of selected ridge flank crustal environments, and present a framework for delineating a continuum of conditions and processes that are likely to be important for defining subseafloor microbial "provinces." The basis for this framework is three governing conditions that help to determine the nature of subseafloor biomes: crustal age, extent of fluid flow, and thermal state. We present a brief overview of subseafloor conditions, within the context of these three characteristics, for five field sites where microbial studies have been done, are underway, or have been proposed. Technical challenges remain and likely will limit progress in studies of microbial ridge flank ecosystems, which is why it is vital to select and design future studies so as to leverage as much general understanding as possible from work focused at a small number of sites. A characterization framework such that as presented in this paper, perhaps including alternative or additional physical or chemical characteristics, is essential for achieving the greatest benefit from multidisciplinary microbial investigations of oceanic ridge flanks. PMID:22347212

Displacement-length scaling of brittle faults in ductile shear.

PubMed

Grasemann, Bernhard; Exner, Ulrike; Tschegg, Cornelius

2011-11-01

Within a low-grade ductile shear zone, we investigated exceptionally well exposed brittle faults, which accumulated antithetic slip and rotated into the shearing direction. The foliation planes of the mylonitic host rock intersect the faults approximately at their centre and exhibit ductile reverse drag. Three types of brittle faults can be distinguished: (i) Faults developing on pre-existing K-feldspar/mica veins that are oblique to the shear direction. These faults have triclinic flanking structures. (ii) Wing cracks opening as mode I fractures at the tips of the triclinic flanking structures, perpendicular to the shear direction. These cracks are reactivated as faults with antithetic shear, extend from the parent K-feldspar/mica veins and form a complex linked flanking structure system. (iii) Joints forming perpendicular to the shearing direction are deformed to form monoclinic flanking structures. Triclinic and monoclinic flanking structures record elliptical displacement-distance profiles with steep displacement gradients at the fault tips by ductile flow in the host rocks, resulting in reverse drag of the foliation planes. These structures record one of the greatest maximum displacement/length ratios reported from natural fault structures. These exceptionally high ratios can be explained by localized antithetic displacement along brittle slip surfaces, which did not propagate during their rotation during surrounding ductile flow.

High performance cutting using micro-textured tools and low pressure jet coolant

NASA Astrophysics Data System (ADS)

Obikawa, Toshiyuki; Nakatsukasa, Ryuta; Hayashi, Mamoru; Ohno, Tatsumi

2018-05-01

Tool inserts with different kinds of microtexture on the flank face were fabricated by laser irradiation for promoting the heat transfer from the tool face to the coolant. In addition to the micro-textured tools, jet coolant was applied to the tool tip from the side of the flank face, but under low-pressure conditions, to make Reynolds number of coolant as high as possible in the wedge shape zone between the tool flank and machined surface. First, the effect of jet coolant on the flank wear evolution was investigated using a tool without microtexture. The jet coolant showed an excellent improvement of the tool life in machining stainless steel SUS304 at higher cutting speeds. It was found that both the flow rate and velocity of jet coolant were indispensable to high performance cutting. Next, the effect of microtexture on the flank wear evolution was investigated using jet coolant. Three types of micro grooves extended tool life largely compared to the tool without microtexture. It was found that the depth of groove was one of important parameters affecting the tool life extension. As a result, the tool life was extended by more than l00 % using the microtextured tools and jet coolant compared to machining using flood coolant and a tool without microtexture.

Efficient Processing of the Immunodominant, HLA-A*0201-Restricted Human Immunodeficiency Virus Type 1 Cytotoxic T-Lymphocyte Epitope despite Multiple Variations in the Epitope Flanking Sequences

PubMed Central

Brander, Christian; Yang, Otto O.; Jones, Norman G.; Lee, Yun; Goulder, Philip; Johnson, R. Paul; Trocha, Alicja; Colbert, David; Hay, Christine; Buchbinder, Susan; Bergmann, Cornelia C.; Zweerink, Hans J.; Wolinsky, Steven; Blattner, William A.; Kalams, Spyros A.; Walker, Bruce D.

1999-01-01

Immune escape from cytotoxic T-lymphocyte (CTL) responses has been shown to occur not only by changes within the targeted epitope but also by changes in the flanking sequences which interfere with the processing of the immunogenic peptide. However, the frequency of such an escape mechanism has not been determined. To investigate whether naturally occurring variations in the flanking sequences of an immunodominant human immunodeficiency virus type 1 (HIV-1) Gag CTL epitope prevent antigen processing, cells infected with HIV-1 or vaccinia virus constructs encoding different patient-derived Gag sequences were tested for recognition by HLA-A*0201-restricted, p17-specific CTL. We found that the immunodominant p17 epitope (SL9) and its variants were efficiently processed from minigene expressing vectors and from six HIV-1 Gag variants expressed by recombinant vaccinia virus constructs. Furthermore, SL9-specific CTL clones derived from multiple donors efficiently inhibited virus replication when added to HLA-A*0201-bearing cells infected with primary or laboratory-adapted strains of virus, despite the variability in the SL9 flanking sequences. These data suggest that escape from this immunodominant CTL response is not frequently accomplished by changes in the epitope flanking sequences. PMID:10559335

Neural Correlates of Conflict Control on Facial Expressions with A Flanker Paradigm

PubMed Central

Liu, Tongran; Xiao, Tong; Shi, Jian-Nong

2013-01-01

Conflict control is an important cognitive control ability and it is also crucial for human beings to execute conflict control on affective information. To address the neural correlates of cognitive control on affective conflicts, the present study recorded event-related potentials (ERPs) during a revised Eriksen Flanker Task. Participants were required to indicate the valence of the central target expression while ignoring the flanker expressions in the affective congruent condition, affective incongruent condition and neutral condition (target expressions flanked by scramble blocks). Behavioral results manifested that participants exhibited faster response speed in identifying neutral target face when it was flanked by neutral distractors than by happy distractors. Electrophysiological results showed that happy target expression induced larger N2 amplitude when flanked by sad distractors than by happy distractors and scramble blocks during the conflict monitoring processing. During the attentional control processing, happy target expression induced faster P3 response when it was flanked by happy distractors than by sad distractors, and sad target expression evoked larger P3 amplitude when it was flanked by happy distractors comparing with sad distractors. Taken together, the current findings of temporal dynamic of brain activity during cognitive control on affective conflicts shed light on the essential relationship between cognitive control and affective information processing. PMID:23894521

Neural correlates of conflict control on facial expressions with a flanker paradigm.

PubMed

Liu, Tongran; Xiao, Tong; Shi, Jian-Nong

2013-01-01

Conflict control is an important cognitive control ability and it is also crucial for human beings to execute conflict control on affective information. To address the neural correlates of cognitive control on affective conflicts, the present study recorded event-related potentials (ERPs) during a revised Eriksen Flanker Task. Participants were required to indicate the valence of the central target expression while ignoring the flanker expressions in the affective congruent condition, affective incongruent condition and neutral condition (target expressions flanked by scramble blocks). Behavioral results manifested that participants exhibited faster response speed in identifying neutral target face when it was flanked by neutral distractors than by happy distractors. Electrophysiological results showed that happy target expression induced larger N2 amplitude when flanked by sad distractors than by happy distractors and scramble blocks during the conflict monitoring processing. During the attentional control processing, happy target expression induced faster P3 response when it was flanked by happy distractors than by sad distractors, and sad target expression evoked larger P3 amplitude when it was flanked by happy distractors comparing with sad distractors. Taken together, the current findings of temporal dynamic of brain activity during cognitive control on affective conflicts shed light on the essential relationship between cognitive control and affective information processing.

Displacement–length scaling of brittle faults in ductile shear

PubMed Central

Grasemann, Bernhard; Exner, Ulrike; Tschegg, Cornelius

2011-01-01

Within a low-grade ductile shear zone, we investigated exceptionally well exposed brittle faults, which accumulated antithetic slip and rotated into the shearing direction. The foliation planes of the mylonitic host rock intersect the faults approximately at their centre and exhibit ductile reverse drag. Three types of brittle faults can be distinguished: (i) Faults developing on pre-existing K-feldspar/mica veins that are oblique to the shear direction. These faults have triclinic flanking structures. (ii) Wing cracks opening as mode I fractures at the tips of the triclinic flanking structures, perpendicular to the shear direction. These cracks are reactivated as faults with antithetic shear, extend from the parent K-feldspar/mica veins and form a complex linked flanking structure system. (iii) Joints forming perpendicular to the shearing direction are deformed to form monoclinic flanking structures. Triclinic and monoclinic flanking structures record elliptical displacement–distance profiles with steep displacement gradients at the fault tips by ductile flow in the host rocks, resulting in reverse drag of the foliation planes. These structures record one of the greatest maximum displacement/length ratios reported from natural fault structures. These exceptionally high ratios can be explained by localized antithetic displacement along brittle slip surfaces, which did not propagate during their rotation during surrounding ductile flow. PMID:26806996

Composition and Structure of Mauna Loa's Submarine West Flank, Hawaii

NASA Astrophysics Data System (ADS)

Borchers, D.; Morgan, J. K.; Clague, D. A.; Moore, G. F.

2003-12-01

James Moore's pioneering work on submarine landslides in the Hawaiian Islands contributed significantly to early models for the structure and evolution of Mauna Loa's submarine western flank. The west flank experienced catastrophic failure in the past, generating massive blocks and debris fields offshore. Moore recognized that the midslope bench near the base of the submarine flank must have postdated the debris avalanche, but little data existed to determine if it formed in response to further landsliding or to deeper volcanic processes. As the processes that shaped Mauna Loa are thought to be analogous to those currently active at Kilauea, an improved understanding of Mauna Loa's history can provide valuable insight into the future of the younger Hawaiian volcanoes. Several recent marine surveys in the area, including submersible surveys conducted by MBARI and JAMSTEC, and a multi-channel seismic (MCS) survey carried out by the University of Hawaii, provide important new data about the composition and structure of Mauna Loa's submarine west flank. We carried out detailed geochemical, petrographic and structural analyses of rock samples and dive videos collected from the exposed northern wall of the midslope bench, documenting a repeated sequences of volcaniclastic sandstones and breccias. This stratigraphy contrasts with the predominantly subaerially erupted basalts composing the upper flank. Several thick ponded flows or sill-like diabase units are also interspersed in the section. The volcaniclastic units are highly cemented, and many contain hydrothermal alteration products, including chlorite, zeolites, and actinolite. The most altered rocks occur near the base of the bench and the degree of alteration decreases upward in the section. Samples collected from the outer scarp of the bench show evidence for intense shearing and cataclasis at all scales. The new MCS line crosses Mauna Loa's southern submarine flank and central bench. More than 500 m of finely layered slope strata overlie the upper flank to the south, and are truncated above the Ka Lae avalanche scar. The central bench to the north, sampled by the MBARI dives, shows only thin sediment cover above a poorly reflective interior. Strong deep reflections in both locations begin to resolve the underlying oceanic crust, as well as probable fault planes that may be responsible for flank deformation in this area. The abundance of volcaniclastic rocks with Mauna Loa affinities within the bench supports the idea that giant landslides from Mauna Loa were the source of much of the offshore debris. The stratal repetition, deformation fabrics, and cementation of the volcaniclastics also suggest that the rocks composing the bench were once deeply buried and have been subsequently exhumed by thrusting, most likely driven by deep volcanic spreading.

[Extracapsular hepatic adenoma. Case report and literature review].

PubMed

Vargas-Flores, Edgar; Pérez-Aguilar, Francisco; Valdez-Mendieta, Yanet

Hepatic adenomas are uncommon epithelial tumours. They usually appear in women between 20 and 44 years old. They are commonly located in the right hepatic lobe and are typically solitary masses. Multiple adenomas can present in patients with prolonged use of oral contraceptive pills, glycogen storage diseases and hepatic adenomatosis. A 35 year-old woman without any significant past medical history, with a chief complaint that started in December 2012 with oppressive, mild intensity abdominal pain located in right upper quadrant in the abdomen on deep palpation. With an abdominal ultrasound showing a mass of 91×82×65cm located in the right flank, isoechogenic with internal vascularity. Contrast computed tomography scan showing an ovoid tumour with circumscribed borders, with heterogenic intense reinforcement and displacement of adjacent structures with dimensions of 88×71×80cm. In laparotomy, excision of the tumour and cholecystectomy with the trans surgical findings of an 8cm tumour with a pedicle containing one artery and one vein coming from the hepatic free border with strong adhesions to the gallbladder. Pathologic diagnosis: Extracapsular hepatic adenoma. Incidence of hepatic adenomas has increased in the last decades, in a parallel fashion with the introduction of oral contraceptive pills, showing association with glycogen storage diseases and to a lesser degree with diabetes and pregnancy. Diagnosis is clinical with the aid of imaging studies. Prognosis of hepatic adenomas is not well established, therefore, management depends on symptoms, size, number, location and certainty of diagnosis. Copyright © 2015 Academia Mexicana de Cirugía A.C. Publicado por Masson Doyma México S.A. All rights reserved.

Microsatellite mapping of a Triticum urartu Tum. derived powdery mildew resistance gene transferred to common wheat (Triticum aestivum L.).

PubMed

Qiu, Y C; Zhou, R H; Kong, X Y; Zhang, S S; Jia, J Z

2005-11-01

A powdery mildew resistance gene from Triticum urartu Tum. accession UR206 was successfully transferred into hexaploid wheat (Triticum aestivum L.) through crossing and backcrossing. The F1 plants, which had 28 chromosomes and an average of 5.32 bivalents and 17.36 univalents in meiotic pollen mother cells (PMC), were obtained through embryos rescued owing to shriveling of endosperm in hybrid seed of cross Chinese Spring (CS) x UR206. Hybrid seeds were produced through backcrossing F1 with common wheat parents. The derivative lines had normal chromosome numbers and powdery mildew resistance similar to the donor UR206, indicating that the powdery mildew resistance gene originating from T. urartu accession UR206 was successfully transferred and expressed in a hexaploid wheat background. Genetic analysis indicated that a single dominant gene controlled the powdery mildew resistance at the seedling stage. To map and tag the powdery mildew resistance gene, 143 F2 individuals derived from a cross UR206 x UR203 were used to construct a linkage map. The resistant gene was mapped on the chromosome 7AL based on the mapped microsatellite makers. The map spanned 52.1 cM and the order of these microsatellite loci agreed well with the established microsatellite map of chromosome arm 7AL. The resistance gene was flanked by the microsatellite loci Xwmc273 and Xpsp3003, with the genetic distances of 2.2 cM and 3.8 cM, respectively. On the basis of the origin and chromosomal location of the gene, it was temporarily designated PmU.

Preliminary paleomagnetic results from the Coyote Creek Outdoor Classroom drill hole, Santa Clara Valley, California

USGS Publications Warehouse

Mankinen, Edward A.; Wentworth, Carl M.

2003-01-01

Paleomagnetic samples were obtained from cores taken during the drilling of a research well along Coyote Creek in San Jose, California, in order to use the geomagnetic field behavior recorded in those samples to provide age constraints for the sediment encountered. The well reached a depth of 308 meters and material apparently was deposited largely (entirely?) during the Brunhes Normal Polarity Chron, which lasted from 780 ka to the present time. Three episodes of anomalous magnetic inclinations were recorded in parts of the sedimentary sequence; the uppermost two we correlate to the Mono Lake (~30 ka) geomagnetic excursion and 6 cm lower, tentatively to the Laschamp (~45 ka) excursion. The lowermost anomalous interval occurs at 305 m and consists of less than 10 cm of fully reversed inclinations underlain by 1.5 m of normal polarity sediment. This lower anomalous interval may represent either the Big Lost excursion (~565 ka) or the polarity transition at the end of the Matuyama Reversed Polarity Chron (780 ka). The average rates of deposition for the Pleistocene section in this well, based on these two alternatives, are approximately 52 or 37 cm/kyr, respectively.

Influence of applied quantity of sunscreen products on the sun protection factor--a multicenter study organized by the DGK Task Force Sun Protection.

PubMed

Bimczok, R; Gers-Barlag, H; Mundt, C; Klette, E; Bielfeldt, S; Rudolph, T; Pflucker, F; Heinrich, U; Tronnier, H; Johncock, W; Klebon, B; Westenfelder, H; Flosser-Muller, H; Jenni, K; Kockott, D; Lademann, J; Herzog, B; Rohr, M

2007-01-01

It is often debated that the protection against solar-induced erythema under real conditions is dependent upon the amount of sunscreen applied. It is believed that when too little is applied a lower sun protection than indicated on the label will result. The aim of this study was to quantify this effect. In this multicenter study, the influence of three different amounts (0.5, 1.0, 2.0 mg/cm(2)) of three commercial sunscreen products in three reliable test centers was investigated according to the test protocol of The International Sun Protection Factor Test Method. The main result was a linear dependence of the SPF on the quantity applied. Taking into consideration the volunteer-specific variations, an exponential dependence of confidence interval of the in vivo SPF and amount applied was found. The highest amount applied (2.0 mg/cm(2)) was linked to the lowest confidence intervals. Thus, from the point of view of producing reliable and reproducible in vivo results under laboratory conditions, the recommendation of this multicenter study is an application quantity of 2.0 mg/cm(2).

Associations among Obesity, Eating Speed, and Oral Health

PubMed Central

Sonoda, Chikanobu; Fukuda, Hideki; Kitamura, Masayasu; Hayashida, Hideaki; Kawashita, Yumiko; Furugen, Reiko; Koyama, Zenya; Saito, Toshiyuki

2018-01-01

Objective This study was conducted to understand how eating speed and oral health condition are associated with obesity in Japanese working men. Methods We studied a total of 863 men attending an annual medical checkup of the Japanese Maritime Self Defense Force in Sasebo City, Japan. Participants answered a questionnaire about their eating speed, and we examined their anthropometric status in terms of BMI, waist circumference, and oral health condition, especially periodontal disease and number of functional teeth. Multivariate logistic regression analyses adjusting for potential confounding variables were performed. Results The multivariate-adjusted odds ratio for waist circumference greater than 90 cm of the ‘very fast’ group compared to the ‘slow, very slow’ group was 5.22 (95% confidence interval 1.81–15.06) after adjusting for potential confounding factors. Individuals were more likely to have waist circumference greater than 90 cm if they had a larger ‘number of missing functional teeth’ (odds ratio 1.14; 95% confidence interval 1.01–1.28) and severe periodontal disease (odds ratio 2.74; 95% confidence interval, 1.46–5.13). Conclusion Eating speed, the number of missing functional teeth, and severe periodontal disease are associated independently with larger waist circumference. PMID:29669358

Seismic and chronostratigraphic results from SHALDRIL II, northwestern Weddell Sea

USGS Publications Warehouse

Anderson, J.B.; Wellner, J.; Wise, S.; Bohaty, S.; Manley, P.; Smith, T.; Weaver, F.; Kulhanek, D.

2007-01-01

The 2006 SHALDRIL II cruise was conducted in the northwestern Weddell Sea, with primary drilling targets in the James Ross Basin. A site drilled along the northern edge of the James Ross Basin sampled either latest Eocene or earliest Oligocene deposits, providing a lower chronostratigraphic benchmark for our seismic stratigraphic age model. Severe sea ice conditions forced abandonment of several of the James Ross Basin sites. Three alternate sites were drilled along the southern flank of the Joinville Plateau. Seismic data from the area show a thick, southward dipping stratigraphic succession with no conspicuous gaps. Three drill sites sampled this succession and recovered Oligocene, middle Miocene, and early Pliocene strata overlain by a thin drape of Pleistocene deposits. The Pliocene-Miocene boundary appears to be represented by a disconformity within the cored interval. Otherwise, this is one of the most complete post-Eocene successions anywhere on Antarctica and its adjacent margins

Osteopoikilosis, short stature and mental retardation as key features of a new microdeletion syndrome on 12q14.

PubMed

Menten, Björn; Buysse, Karen; Zahir, Farah; Hellemans, Jan; Hamilton, Sara J; Costa, Teresa; Fagerstrom, Carrie; Anadiotis, George; Kingsbury, Daniel; McGillivray, Barbara C; Marra, Marco A; Friedman, Jan M; Speleman, Frank; Mortier, Geert

2007-04-01

This report presents the detection of a heterozygous deletion at chromosome 12q14 in three unrelated patients with a similar phenotype consisting of mild mental retardation, failure to thrive in infancy, proportionate short stature and osteopoikilosis as the most characteristic features. In each case, this interstitial deletion was found using molecular karyotyping. The deletion occurred as a de novo event and varied between 3.44 and 6 megabases (Mb) in size with a 3.44 Mb common deleted region. The deleted interval was not flanked by low-copy repeats or segmental duplications. It contains 13 RefSeq genes, including LEMD3, which was previously shown to be the causal gene for osteopoikilosis. The observation of osteopoikilosis lesions should facilitate recognition of this new microdeletion syndrome among children with failure to thrive, short stature and learning disabilities.

Mississippian Lodgepole Play, Williston Basin: A review

DOE Office of Scientific and Technical Information (OSTI.GOV)

Montgomery, S.L.

1996-06-01

Waulsortian-type carbonate mud mounds in the lower Mississippian Lodgepole formation (Bottineau interval, Madison Group) comprise an important new oil play in the Williston basin with strong regional potential. The play is typified by wells capable of producing 1000-2500 bbl of oil per day and by reserves that have as much as 0.5-3.0 million bbl of oil per well. Currently centered in Stark County, North Dakota, along the southern flank of the basin, the play includes 38 wells, with 21 producers and 6 new fields. Initial discovery was made at a Silurian test in Dickinson field, traditionally productive from Pennsylvanian sands.more » The largest pool discovered to date is Eland field, which has 15 producers and estimated total reserves of 12-15 million bbl. This report summarizes geologic, well-log, seismic, and production data for this play, which promises to expand considerably in the years to come.« less

Macrolichens as biomonitors of air-quality change in western Pennsylvania

DOE Office of Scientific and Technical Information (OSTI.GOV)

McClenahen, J.R.; Davis, D.D.; Hutnik, R.J.

2007-07-01

Species richness of corticolous macrolichens was monitored at one- or two-year intervals on a total of 63 plots from 1997-2003 in a region of west-central Pennsylvania that included four coal-fired power generating stations and an industrial city. Lichen richness significantly increased from an average of 5.7 species/plot in 1997 to 9.3 species/plot in 2003. A linear mean rate of gain in species on regional monitoring plots was 0.56 species/yr. Plots along a major ridge top had a slower but significant gain in richness, and a localized area flanked by the city and two generating stations exhibited less lichen recolonization. Ourmore » results confirm the value of macrolichens as indicators of air quality and the importance of examining temporal as well as spatial changes in lichen richness to ascertain air-quality status.« less

Evidence from a natural experiment that malaria parasitemia is pathogenic in retinopathy-negative cerebral malaria

PubMed Central

Small, Dylan S; Taylor, Terrie E; Postels, Douglas G; Beare, Nicholas AV; Cheng, Jing; MacCormick, Ian JC; Seydel, Karl B

2017-01-01

Cerebral malaria (CM) can be classified as retinopathy-positive or retinopathy-negative, based on the presence or absence of characteristic retinal features. While malaria parasites are considered central to the pathogenesis of retinopathy-positive CM, their contribution to retinopathy-negative CM is largely unknown. One theory is that malaria parasites are innocent bystanders in retinopathy-negative CM and the etiology of the coma is entirely non-malarial. Because hospitals in malaria-endemic areas often lack diagnostic facilities to identify non-malarial causes of coma, it has not been possible to evaluate the contribution of malaria infection to retinopathy-negative CM. To overcome this barrier, we studied a natural experiment involving genetically inherited traits, and find evidence that malaria parasitemia does contribute to the pathogenesis of retinopathy-negative CM. A lower bound for the fraction of retinopathy-negative CM that would be prevented if malaria parasitemia were to be eliminated is estimated to be 0.93 (95% confidence interval: 0.68, 1). DOI: http://dx.doi.org/10.7554/eLife.23699.001 PMID:28590246

Stratigraphy, correlation, and age estimates for fossils from Area 123, Koobi Fora.

PubMed

Feibel, Craig S; Lepre, Christopher J; Quinn, Rhonda L

2009-08-01

Geological data from the Bura Hasuma region at Koobi Fora provide important constraints for estimating the ages of hominin fossils recovered there, including the cranium KNM-ER 1813. Strata of the upper Burgi, KBS, and Okote members in this part of Koobi Fora reflect three depositional regimes driven by changing paleogeography through time. The upper Burgi and lowermost KBS sequence in the southern Bura Hasuma region accumulated in a lacustrine to delta front setting, with highly localized depositional patterns, limiting the lateral extent of lithostratigraphic markers. Farther north, uppermost upper Burgi through KBS member strata document a fluctuating lake margin, with complex facies patterns. This interval is marked by laterally extensive lithostratigraphic markers, including molluscan packstones, beach sandstones, and stromatolite beds. The uppermost KBS and Okote members show a transition to dominantly fluvial character, with localized and discontinuous accumulation. An age model for the richly fossiliferous Area 123 sequence demonstrates the complexity of terrestrial accumulation patterns. Early lacustrine and delta front accumulation is marked by fairly continuous sedimentation, and high accumulation rates (up to ca. 91 cm/k.yr.). The fluctuating lake margin interval reflects lower sedimentation rates coupled with intervals of exposure, decreasing accumulation significantly (to ca. 13 cm/k.yr.). The capping fluvial interval is marked by significant erosion surfaces, breaks which may drop the overall accumulation rate even lower (ca. 0.3 cm/k.yr.). The data provided here establish a geological framework at odds with a recent proposal of ages considerably younger (by ca. 250 k.yr.) for many of the fossils from Area 123 and elsewhere. Tests of age models demonstrate that the younger ages are not possible. While minor refinements to age estimates for fossils are indicated by improved chronostratigraphic control, in the case of KNM-ER 1813, an age of younger than 1.78 Ma is precluded on magnetostratigraphic grounds.

Effects of cooling interval and MnO2, TiO2, CdO, NiO additions on spheluritic willemite crystals

NASA Astrophysics Data System (ADS)

Coşkun, Nihal Derin; Uz, Veli; Issi, Ali; Genç, Soner; Çakı, Münevver

2017-01-01

Macro crystal production in crystal glaze systems is a very important topic in ceramic art and science. In this study, crystal growth was obtained in two different firing regimes. Recipes were prepared by adding MnO, TiO, NiO and CdO into the frit. The first firing regime, which is used in artistic ceramics, has a 100 °C cooling temperature interval. The second regime that has a 580 °C cooling temperature interval, was determined by DTA analysis. Then, the development of crystals was compared between these two firing regimes. According to the results, spheluritic willemite crystals up to three cm in the glazes doped MnO2 have been obtained by cooling it in a wide cooling interval. Larger willemite crystals were not formed in the narrow cooling temperature interval. It was determined that larger crystals can be produced by cooling at wide cooling temperature intervals and holding at lower temperature which involves nucleating the temperature of the crystal.

Carbonate platform, slope, and basinal deposits of Upper Oligocene, Kalimantan, Indonesia

DOE Office of Scientific and Technical Information (OSTI.GOV)

Armin, R.A.; Cutler, W.G.; Mahadi, S.

1987-05-01

Upper Oligocene platform carbonates (Berai Formation) occur extensively on the Barito shelf in southeastern Kalimantan (Borneo) and are flanked northward by coeval slope and basinal deposits (Bongan Formation) which accumulated in the southwestern part of the Kutei basin. Isolated carbonate buildups equivalent to the Berai Formation also occur within the Kutei basin and were probably deposited on basement highs. The distribution of these facies is fairly well constrained by the study of outcrops, wells, and seismic profiles. The Berai Formation consists of diverse limestone types with a wide range of textures and with dominant skeletal components of large foraminifera, redmore » algae, and corals. Deposition of the Berai Formation occurred in moderate- and high-energy shallow-marine conditions. Slope and basin facies occur in extensional basins adjacent to the shelfal carbonates and peripheral to isolated carbonate buildups. Slope deposits consist of hemipelagic claystone, debris-flow conglomerate, calciturbidite, and volcaniclastic intervals. syndepositional downslope transport of slope deposits was an important process, as indicated by intervals containing redeposited debris flows, intraformational truncation surfaces, slide blocks, and associated shear planes. Recurrent movement on basin-margin faults and local volcanism probably perpetuated instability of slope deposits. Basinal deposits consist of calcareous claystone with intercalated thin, distal calciturbidite and volcaniclastic beds.« less

Mapping of the locus for autosomal dominant amelogenesis imperfecta (AIH2) to a 4-Mb YAC contig on chromosome 4q11-q21

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kaerrman, C.; Holmgren, G.; Forsman, K.

1997-01-15

Amelogenesis imperfecta (Al) is a clinically and genetically heterogeneous group of inherited enamel defects. We recently mapped a locus for autosomal dominant local hypoplastic amelogenesis imperfecta (AIH2) to the long arm of chromosome 4. The disease gene was localized to a 17.6-cM region between the markers D4S392 and D4S395. The albumin gene (ALB), located in the same interval, was a candidate gene for autosomal dominant AI (ADAI) since albumin has a potential role in enamel maturation. Here we describe refined mapping of the AIH2 locus and the construction of marker maps by radiation hybrid mapping and yeast artificial chromosome (YAC)-basedmore » sequence tagged site-content mapping. A radiation hybrid map consisting of 11 microsatellite markers in the 5-cM interval between D4S409 and D4S1558 was constructed. Recombinant haplotypes in six Swedish ADAI families suggest that the disease gene is located in the interval between D4S2421 and ALB. ALB is therefore not likely to be the disease-causing gene. Affected members in all six families share the same allele haplotypes, indicating a common ancestral mutation in all families. The AIH2 critical region is less than 4 cM and spans a physical distance of approximately 4 Mb as judged from radiation hybrid maps. A YAC contig over the AIH2 critical region including several potential candidate genes was constructed. 35 refs., 4 figs., 1 tab.« less

The Depositional and Erosional History of Northwestern Aeolis Mons, Gale Crater, Mars: Insights from Detailed 1:2K Geologic Mapping

NASA Astrophysics Data System (ADS)

Edgar, L. A.; Calef, F. J., III; Thomson, B. J.

2017-12-01

The Mars Science Laboratory (MSL) Curiosity rover is currently exploring the stratigraphy exposed in Aeolis Mons, the central mound of Gale crater. Gale crater has been the target of numerous remote sensing studies, aimed at understanding the origin and evolution of the mound, informally known as Mt. Sharp. A number of efforts have produced geologic maps of the mound and the MSL traverse path, in order to investigate the stratigraphic relationships between different sedimentary units. However, a scale gap exists between local mapping and stratigraphic analyses of the area explored by Curiosity and regional mapping of Aeolis Mons. As Curiosity explores the northwest flank of Aeolis Mons, there is a critical need for investigations to bridge this gap to enable rover-scale observations to be tied to orbital interpretations. This study is focused on detailed geologic mapping and stratigraphic correlations for the northwest flank of Aeolis Mons, including an area that the Curiosity rover will likely explore. The study region covers a 5.8 x 10 km area from approximately 137.27 to 137.44 °E and -4.70 to -4.82 °N. A 25 cm/pixel mosaic produced from images acquired by the High Resolution Imaging Science Experiment (HiRISE) camera provides a basemap for all mapping, and topographic information is provided by a HiRISE 1 m Digital Terrain Model. Preliminary digital geologic mapping was carried out at a scale of 1:10,000 to provide a framework for detailed geologic mapping efforts. Higher-resolution geologic mapping was then conducted at a scale of 1:2,000, and type localities were identified. As a result of newer, higher-resolution datasets that are now available and more narrowly focused mapping, we identify a number of new geologic units. Erosional remnants of some units point to a substantial erosional history. Collectively, the stratigraphy records diverse sedimentary environments and more variability in the depositional and erosional histories than previously identified. This study helps bridge the gap between previous mapping efforts and detailed rover-scale mapping, and will enable rover observations to be more closely tied to orbital interpretations across the northwest flank of Aeolis Mons.

Strain rate dependent calcite microfabric evolution - an experiment carried out by nature

NASA Astrophysics Data System (ADS)

Rogowitz, A.; Huet, B.; Grasemann, B.; Habler, G.

2013-12-01

The deformation behaviour of calcite has been studied extensively in a number of experiments. Different strain rates and pressure and temperature conditions have been used to investigate a wide range of deformation regimes. However, a direct comparison with natural fault rocks remains difficult because of extreme differences between experimental and natural strain rates. A secondary shear zone (flanking structure) developed in almost pure calcite marble on Syros (Greece). Due to rotation of an elliptical inclusion (crack) a heterogeneous strain field in the surrounding area occurred resulting in different strain domains and the formation of the flanking structure. Assuming that deformation was active continuously during the development of the flanking structure, the different strain domains correspond to different strain-rate domains. The outcrop thus represents the final state of a natural experiment and gives us a great opportunity to get natural constraints on strain rate dependent deformation behaviour of calcite. Comparing the microfabrics in the 1 to 2.5 cm thick shear zone and the surrounding host rocks, which formed under the same metamorphic conditions but with different strain rates, is the central focus of this study. Due to the extreme variation in strain and strain rate, different microstructures and textures can be observed corresponding to different deformation mechanisms. With increasing strain rate we observe a change in dominant deformation mechanism from dislocation glide to dislocation creep and finally diffusion creep. Additionally, a change from subgrain rotation (SGR) to bulging (BLG) recrystallization can be observed in the dislocation creep regime. Textures and the degree of intracrystalline deformation have been measured by electron back scatter diffraction (EBSD). At all strain rates clear CPOs developed leading to the assumption that calcite preferentially deforms within the dislocation creep field. However, we can also find clear evidence for grain size sensitive deformation mechanisms at smaller grain sizes (3.6 μm) consistent with experimental observations and determined flaw laws. Although mylonitic layers evolve at high (10^-10 s^-1) and intermediate strain rates (10^-11 s^-1) by SGR recrystallization we observe variations in texture leading to the assumption that at varying strain rates different gliding systems were active. The results of this study are compared with experimental data, closing the gap between experimental and natural geological strain rates.

Identification of QTL regions and SSR markers associated with resistance to reniform nematode in Gossypium barbadense L. accession GB713.

PubMed

Gutiérrez, Osman A; Robinson, Arin F; Jenkins, Johnie N; McCarty, Jack C; Wubben, Martin J; Callahan, Franklin E; Nichols, Robert L

2011-02-01

The identification of molecular markers that are closely linked to gene(s) in Gossypium barbadense L. accession GB713 that confer a high level of resistance to reniform nematode (RN), Rotylenchulus reniformis Linford & Oliveira, would be very useful in cotton breeding programs. Our objectives were to determine the inheritance of RN resistance in the accession GB713, to identify SSR markers linked with RN resistance QTLs, and to map these linked markers to specific chromosomes. We grew and scored plants for RN reproduction in the P(1), P(2), F(1), F(2), BC(1)P(1), and BC(1)P(2) generations from the cross of GB713 × Acala Nem-X. The generation means analysis using the six generations indicated that one or more genes were involved in the RN resistance of GB713. The interspecific F(2) population of 300 plants was genotyped with SSR molecular markers that covered most of the chromosomes of Upland cotton (G. hirsutum L.). Results showed two QTLs on chromosome 21 and one QTL on chromosome 18. One QTL on chromosome 21 was at map position 168.6 (LOD 28.0) flanked by SSR markers, BNL 1551_162 and GH 132_199 at positions 154.2 and 177.3, respectively. A second QTL on chromosome 21 was at map position 182.7 (LOD 24.6) flanked by SSR markers BNL 4011_155 and BNL 3279_106 at positions 180.6 and 184.5, respectively. Our chromosome 21 map had 61 SSR markers covering 219 cM. One QTL with smaller genetic effects was localized to chromosome 18 at map position 39.6 (LOD 4.0) and flanked by SSR markers BNL 1721_178 and BNL 569_131 at positions 27.6 and 42.9, respectively. The two QTLs on chromosome 21 had significant additive and dominance effects, which were about equal for each QTL. The QTL on chromosome 18 showed larger additive than dominance effects. Following the precedent set by the naming of the G. longicalyx Hutchinson & Lee and G. aridum [(Rose & Standley) Skovsted] sources of resistance, we suggest the usage of Ren (barb1) and Ren (barb2) to designate these QTLs on chromosome 21 and Ren (barb3) on chromosome 18.

How fast was the Matuyama-Brunhes geomagnetic reversal? A new subcentennial record from the Sulmona Basin, central Italy

NASA Astrophysics Data System (ADS)

Sagnotti, Leonardo; Giaccio, Biagio; Liddicoat, Joseph C.; Nomade, Sebastien; Renne, Paul R.; Scardia, Giancarlo; Sprain, Courtney J.

2016-02-01

A recent study of the Matuyama-Brunhes (M-B) geomagnetic field reversal recorded in exposed lacustrine sediments from the Sulmona Basin (Italy) provided a continuous, high-resolution record indicating that the reversal of the field direction at the terminus of the M-B boundary (MBB) occurred in less than a century, about 786 ka ago. In the sediment, thin (4-6 cm) remagnetized horizons were recognized above two distinct tephra layers-SUL2-19 and SUL2-20-that occur ˜25 and ˜35 cm below the MBB, respectively. Also, a faint, millimetre-thick tephra (SUL2-18) occurs 2-3 cm above the MBB. With the aim of improving the temporal resolution of the previous Sulmona MBB record and understanding the possible influence of cryptotephra on the M-B record in the Sulmona Basin, we performed more detailed sampling and analyses of overlapping standard and smaller samples from a 50 cm-long block that spans the MBB. The new data indicate that (i) the MBB is even sharper than previously reported and occurs ˜2.5 cm below tephra SUL2-18, in agreement with the previous study; (ii) the MBB coincides with the rise of an intensity peak of the natural remanent magnetization (NRM) intensity, which extends across SUL2-18; (iii) except for a 2-cm-thick interval just above tephra SUL2-18, the rock magnetic parameters (k, ARM, Mr, Ms, Bc, Bcr) indicate exactly the same magnetic mineralogy throughout the sampled sequence. We conclude that either SUL2-18 resulted in the remagnetization of an interval of about 6 cm (i.e. during the NRM intensity peak spanning ˜260 ± 110 yr, according to the estimated local sedimentation rate), and thus the detailed MBB record is lost because it is overprinted, or the MBB is well recorded, occurred abruptly about 2.5 cm below SUL2-18 and lasted less than 13 ± 6 yr. Both hypotheses challenge our understanding of the geomagnetic field behaviour during a polarity transition and/or of the NRM acquisition process in the Sulmona lacustrine sediment.

Linkage analysis and physical mapping near the gene for x-linked agammaglobulinemia at Xq22

DOE Office of Scientific and Technical Information (OSTI.GOV)

Parolini, O.; Lassiter, G.L.; Henry, M.J.

The gene for x-linked agammaglobulinemia (XLA) has been mapped to Xq22. No recombinations have been reported between the gene and the prob p212 at DXS178; however, this probe is informative in only 30-40% of women and the reported flanking markers, DXS3 and DXS94, and 10-15 cM apart. To identify additional probes that might be useful in genetic counseling, we examined 11 polymorphisms that have been mapped to the Xq21.3-q22 region in 13 families with XLA. In addition, pulsed-field gel electrophoresis and yeast artificial chromosomes (YACs) were used to further characterize the segman of DNA within which the gene for SLAmore » must lie. The results demonstrated that DXS366 and DXS442, which share a 430-kb pulsed-field fragment, could replace DXS3 as proximal flanking markers. Probes at DXS178 and DXS265 identified the same 145-kb pulsed-field fragment, and both loci were contained within a 200-kb YAC identified with the probe p212. A highly polymorphic CA repeat (DCS178CA) was isolated from one end of this YAC and used in linkage analysis. Probes at DXS101 and DXS328 shared several pulsed-field fragments, the smallest of which was 250 kb. No recombinations were seen between XLA and the DXS178-DXS265-DXS178CA complex, DXS101, DXS328, DXS87, or the gene for proteolipid protein (PLP). Key crossovers, when combined with the linkage data from families with Alport syndrome, suggested the following order of loci: cen-DXS3-DXS366-DXS442-(PLP, DXS101, DXS328, DXS178-DXS265-DXS178CA complex, XL)-(DXS87, DXS94)-DXS327-(DXS350, DXS362)-tel. Our studies also limit the segment of DNA within which the XLA gene must lie to the 3- to 4-cM distance between DCS442 and DXS94 and they identify and orient polymorphisms that can be used in genetic counseling not only for XLA but also for Pelizaeus-Merzbacher disease (PLP deficiency), Alport syndrome (COL4A5 deficiency), and Fabry disease ([alpha]-galactosidase A difficiency). 31 refs., 5 figs., 2 tabs.« less

Aeolian responses to climate variability during the past century on Mesquite Lake Playa, Mojave Desert

USGS Publications Warehouse

Whitney, John W.; Breit, George N.; Buckingham, S.E.; Reynolds, Richard L.; Bogle, Rian C.; Luo, Lifeng; Goldstein, Harland L.; Vogel, John M.

2015-01-01

The erosion and deposition of sediments by wind from 1901 to 2013 have created large changes in surface features of Mesquite Lake playa in the Mojave Desert. The decadal scale recurrence of sand-sheet development, migration, and merging with older dunes appears related to decadal climatic changes of drought and wetness as recorded in the precipitation history of the Mojave Desert, complemented by modeled soil-moisture index values. Historical aerial photographs, repeat land photographs, and satellite images document the presence and northward migration of a mid-20th century sand sheet that formed during a severe regional drought that coincided with a multi-decadal cool phase of the Pacific Decadal Oscillation (PDO). The sand sheet slowly eroded during the wetter conditions of the subsequent PDO warm phase (1977–1998) due to a lack of added sediment. Sand cohesion gradually increased in the sand sheet by seasonal additions of salt and clay and by re-precipitation of gypsum, which resulted in the wind-carving of yardangs in the receding sand sheet. Smaller yardangs were aerodynamically shaped from coppice dunes with salt-clay crusts, and larger yardangs were carved along the walls and floor of trough blowouts. Evidence of a 19th century cycle of sand-sheet formation and erosion is indicated by remnants of yardangs, photographed in 1901 and 1916, that were found buried in the mid-20th century sand sheet. Three years of erosion measurements on the playa, yardangs, and sand sheets document relatively rapid wind erosion. The playa has lowered 20 to 40 cm since the mid-20th century and a shallow deflation basin has developed since 1999. Annually, 5–10 cm of surface sediment was removed from yardang flanks by a combination of wind abrasion, deflation, and mass movement. The most effective erosional processes are wind stripping of thin crusts that form on the yardang surfaces after rain events and the slumping of sediment blocks from yardang flanks. These wind-eroded landforms persist several decades to a century before eroding away or being buried by younger sands. On Mesquite Lake playa the climatic history of alternating PDO phases of multi-decadal drought and wetness is recorded twice by the presence of yardangs formed nearly a century apart.

The Consequences of Increased Magma Supply to Kilauea Volcano, Hawai`i

NASA Astrophysics Data System (ADS)

Poland, M.; Miklius, A.; Sutton, A. J.; Orr, T.

2007-12-01

The summer of 2007 was a time of intense activity at Kilauea. By mid-2007, ~4 years of summit inflation had uplifted and extended the caldera by 30 cm and 55 cm, respectively. Lava continued to erupt from the Pu`u `O`o vent on the east rift zone (ERZ) during the inflation. On May 24, 2007, two M4+ normal-faulting earthquakes occurred on caldera-bounding faults southeast of the summit. The seismicity did not affect summit inflation, which continued until June 17 when a dike intruded the upper and middle ERZ, causing a pause in the eruption, collapse of Pu`u `O`o's floor, and a small eruption 6 km uprift of Pu`u `O`o. The inflated state of the summit, relative timing of summit deflation and east rift zone extension, and abundant co-intrusive earthquake activity suggest forcible intrusion of magma. Lava returned to Pu`u `O`o by July 2, forming a lake that gradually refilled much of the collapsed crater. Early on July 21, the lake drained suddenly, the cone began to collapse, and a 2-km-long series of discontinuous eruptive fissures opened on and beyond the east flank of Pu`u `O`o. Sesimicity in Kilauea's south flank has been elevated since June and several M3+ earthquakes have occurred there, including a M5.4 on August 13. An increase in magma supply to Kilauea's shallow magmatic system is the probable cause for the events of summer 2007. Summit inflation since 2003 occurred during a period of constant or increasing magma supply to Pu`u `O`o, based on SO2 emissions from the ERZ. The rate of inflation increased markedly in early 2006, and uplift also began in the southwest rift zone. CO2 emissions at the summit, indicative of the quantity of magma degassing beneath Kilauea's caldera, more than doubled between 2003 and 2006. Also since 2003, the ERZ immediately downrift of Pu`u `O`o extended, and subsidence in the lower ERZ ceased. Together, these factors suggest that the magma supply rate to Kilauea's shallow magmatic system (the summit and rift zones above about 5 km depth) approximately doubled between 2003 and 2006. Subsequent volcanic and earthquake activity, including the events of mid-2007, are probably a result (either directly or indirectly) of this increase.

Modeling of Principal Flank Wear: An Empirical Approach Combining the Effect of Tool, Environment and Workpiece Hardness

NASA Astrophysics Data System (ADS)

Mia, Mozammel; Al Bashir, Mahmood; Dhar, Nikhil Ranjan

2016-10-01

Hard turning is increasingly employed in machining, lately, to replace time-consuming conventional turning followed by grinding process. An excessive amount of tool wear in hard turning is one of the main hurdles to be overcome. Many researchers have developed tool wear model, but most of them developed it for a particular work-tool-environment combination. No aggregate model is developed that can be used to predict the amount of principal flank wear for specific machining time. An empirical model of principal flank wear (VB) has been developed for the different hardness of workpiece (HRC40, HRC48 and HRC56) while turning by coated carbide insert with different configurations (SNMM and SNMG) under both dry and high pressure coolant conditions. Unlike other developed model, this model includes the use of dummy variables along with the base empirical equation to entail the effect of any changes in the input conditions on the response. The base empirical equation for principal flank wear is formulated adopting the Exponential Associate Function using the experimental results. The coefficient of dummy variable reflects the shifting of the response from one set of machining condition to another set of machining condition which is determined by simple linear regression. The independent cutting parameters (speed, rate, depth of cut) are kept constant while formulating and analyzing this model. The developed model is validated with different sets of machining responses in turning hardened medium carbon steel by coated carbide inserts. For any particular set, the model can be used to predict the amount of principal flank wear for specific machining time. Since the predicted results exhibit good resemblance with experimental data and the average percentage error is <10 %, this model can be used to predict the principal flank wear for stated conditions.

Mars: Lithospheric Flexure of the Tharsis Montes Volcanoes and the Evolutionary Relationship to Their Tectonic History

NASA Astrophysics Data System (ADS)

Chute, H.; Dombard, A. J.; Byrne, P. K.

2017-12-01

Lithospheric flexure associated with Arsia, Pavonis, and Ascraeus Montes has been previously studied to constrain the timeline and breadth of endogenic surface features surrounding these volcanoes. Here, we simulate the radial extent of two specific load-related features: annular graben and flank terraces. Detailed mapping of Ascraeus Mons (the youngest of the three volcanoes) showed a phase of compression of the edifice, forming the terraces and an annulus of graben immediately off the flanks, followed by a period of extension that formed additional graben superposed on the terraces on the lower flanks of the edifice. This transition from compression to extension on the lower flanks has been difficult to reconcile in mechanical models. We explore, with finite-element simulations, the effects of a thermal anomaly associated with an intrusive crustal underplate, which results in locally thinning the lithosphere (in contrast to past efforts that assumed a constant-thickness lithosphere). We find that it is primarily the horizontal extent of this thermal anomaly that governs how the lithosphere flexes under a volcano, as well as the transition from flank compression to a tight annulus of extensional stresses. Specifically, we propose that the structures on Ascraeus may be consistent with an early stage of volcanic growth accompanied by an underplate about the same width as the edifice that narrowed as volcanism waned, resulting in an inward migration of the extensional horizontal stresses from the surrounding plains onto the lower flanks. By linking the surface strains on the volcano with the volcano-tectonic evolution predicted by our flexure model, we can further constrain a more accurate timeline for the tectonic history of Ascraeus Mons. More broadly, because these tectonic structures are commonly observed, our results provide a general evolutionary model for large shield volcanoes on Mars.

Prolonged Interruption of Cognitive Control of Conflict Processing Over Human Faces by Task-Irrelevant Emotion Expression

PubMed Central

Kim, Jinyoung; Kang, Min-Suk; Cho, Yang Seok; Lee, Sang-Hun

2017-01-01

As documented by Darwin 150 years ago, emotion expressed in human faces readily draws our attention and promotes sympathetic emotional reactions. How do such reactions to the expression of emotion affect our goal-directed actions? Despite the substantial advance made in the neural mechanisms of both cognitive control and emotional processing, it is not yet known well how these two systems interact. Here, we studied how emotion expressed in human faces influences cognitive control of conflict processing, spatial selective attention and inhibitory control in particular, using the Eriksen flanker paradigm. In this task, participants viewed displays of a central target face flanked by peripheral faces and were asked to judge the gender of the target face; task-irrelevant emotion expressions were embedded in the target face, the flanking faces, or both. We also monitored how emotion expression affects gender judgment performance while varying the relative timing between the target and flanker faces. As previously reported, we found robust gender congruency effects, namely slower responses to the target faces whose gender was incongruent with that of the flanker faces, when the flankers preceded the target by 0.1 s. When the flankers further advanced the target by 0.3 s, however, the congruency effect vanished in most of the viewing conditions, except for when emotion was expressed only in the flanking faces or when congruent emotion was expressed in the target and flanking faces. These results suggest that emotional saliency can prolong a substantial degree of conflict by diverting bottom-up attention away from the target, and that inhibitory control on task-irrelevant information from flanking stimuli is deterred by the emotional congruency between target and flanking stimuli. PMID:28676780

The role of viscous magma mush spreading in volcanic flank motion at Kīlauea Volcano, Hawai‘i

USGS Publications Warehouse

Plattner, C.; Amelung, F.; Baker, S.; Govers, R.; Poland, M.

2013-01-01

Multiple mechanisms have been suggested to explain seaward motion of the south flank of Kīlauea Volcano, Hawai‘i. The consistency of flank motion during both waxing and waning magmatic activity at Kīlauea suggests that a continuously acting force, like gravity body force, plays a substantial role. Using finite element models, we test whether gravity is the principal driver of long-term motion of Kīlauea's flank. We compare our model results to geodetic data from Global Positioning System and interferometric synthetic aperture radar during a time period with few magmatic and tectonic events (2000-2003), when deformation of Kīlauea was dominated by summit subsidence and seaward motion of the south flank. We find that gravity-only models can reproduce the horizontal surface velocities if we incorporate a regional décollement fault and a deep, low-viscosity magma mush zone. To obtain quasi steady state horizontal surface velocities that explain the long-term seaward motion of the flank, we find that an additional weak zone is needed, which is an extensional rift zone above the magma mush. The spreading rate in our model is mainly controlled by the magma mush viscosity, while its density plays a less significant role. We find that a viscosity of 2.5 × 1017–2.5 × 1019 Pa s for the magma mush provides an acceptable fit to the observed horizontal surface deformation. Using high magma mush viscosities, such as 2.5 × 1019 Pa s, the deformation rates remain more steady state over longer time scales. These models explain a significant amount of the observed subsidence at Kīlauea's summit. Some of the remaining subsidence is probably a result of magma withdrawal from subsurface reservoirs

Elements in the transcriptional regulatory region flanking herpes simplex virus type 1 oriS stimulate origin function.

PubMed

Wong, S W; Schaffer, P A

1991-05-01

Like other DNA-containing viruses, the three origins of herpes simplex virus type 1 (HSV-1) DNA replication are flanked by sequences containing transcriptional regulatory elements. In a transient plasmid replication assay, deletion of sequences comprising the transcriptional regulatory elements of ICP4 and ICP22/47, which flank oriS, resulted in a greater than 80-fold decrease in origin function compared with a plasmid, pOS-822, which retains these sequences. In an effort to identify specific cis-acting elements responsible for this effect, we conducted systematic deletion analysis of the flanking region with plasmid pOS-822 and tested the resulting mutant plasmids for origin function. Stimulation by cis-acting elements was shown to be both distance and orientation dependent, as changes in either parameter resulted in a decrease in oriS function. Additional evidence for the stimulatory effect of flanking sequences on origin function was demonstrated by replacement of these sequences with the cytomegalovirus immediate-early promoter, resulting in nearly wild-type levels of oriS function. In competition experiments, cotransfection of cells with the test plasmid, pOS-822, and increasing molar concentrations of a competitor plasmid which contained the ICP4 and ICP22/47 transcriptional regulatory regions but lacked core origin sequences resulted in a significant reduction in the replication efficiency of pOS-822, demonstrating that factors which bind specifically to the oriS-flanking sequences are likely involved as auxiliary proteins in oriS function. Together, these studies demonstrate that trans-acting factors and the sites to which they bind play a critical role in the efficiency of HSV-1 DNA replication from oriS in transient-replication assays.

Spreading and slope instability at the continental margin offshore Mt Etna, imaged by high-resolution 2D seismic data

NASA Astrophysics Data System (ADS)

Gross, Felix; Krastel, Sebastian; Behrmann, Jan-Hinrich; Papenberg, Cord; Geersen, Jacob; Ridente, Domenico; Latino Chiocci, Francesco; Urlaub, Morelia; Bialas, Jörg; Micallef, Aaron

2015-04-01

Mount Etna is the largest active volcano in Europe. Its volcano edifice is located on top of continental crust close to the Ionian shore in east Sicily. Instability of the eastern flank of the volcano edifice is well documented onshore. The continental margin is supposed to deform as well. Little, however, is known about the offshore extension of the eastern volcano flank and its adjacent continental margin, which is a serious shortcoming in stability models. In order to better constrain the active tectonics of the continental margin offshore the eastern flank of the volcano, we acquired and processed a new marine high-resolution seismic and hydro-acoustic dataset. The data provide new detailed insights into the heterogeneous geology and tectonics of shallow continental margin structures offshore Mt Etna. In a similiar manner as observed onshore, the submarine realm is characterized by different blocks, which are controlled by local- and regional tectonics. We image a compressional regime at the toe of the continental margin, which is bound to an asymmetric basin system confining the eastward movement of the flank. In addition, we constrain the proposed southern boundary of the moving flank, which is identified as a right lateral oblique fault movement north of Catania Canyon. From our findings, we consider a major coupled volcano edifice instability and continental margin gravitational collapse and spreading to be present at Mt Etna, as we see a clear link between on- and offshore tectonic structures across the entire eastern flank. The new findings will help to evaluate hazards and risks accompanied by Mt Etna's slope- and continental margin instability and will be used as a base for future investigations in this region.

Gene structure of CYP3A4, an adult-specific form of cytochrome P450 in human livers, and its transcriptional control.

PubMed

Hashimoto, H; Toide, K; Kitamura, R; Fujita, M; Tagawa, S; Itoh, S; Kamataki, T

1993-12-01

CYP3 A4 is the adult-specific form of cytochrome P450 in human livers [Komori, M., Nishio, K., Kitada, M., Shiramatsu, K., Muroya, K., Soma, M., Nagashima, K. & Kamataki, T. (1990) Biochemistry 29, 4430-4433]. The sequences of three genomic clones for CYP3A4 were analyzed for all exons, exon-intron junctions and the 5'-flanking region from the major transcription site to nucleotide position -1105, and compared with those of the CYP3A7 gene, a fetal-specific form of cytochrome P450 in humans. The results showed that the identity of 5'-flanking sequences between CYP3A4 and CYP3A7 genes was 91%, and that each 5'-flanking region had characteristic sequences termed as NFSE (P450NF-specific element) and HFLaSE (P450HFLa specific element), respectively. A basic transcription element (BTE) also lay in the 5'-flanking region of the CYP3A4 gene as seen in many CYP genes [Yanagida, A., Sogawa, K., Yasumoto, K. & Fujii-Kuriyama, Y. (1990) Mol. Cell. Biol. 10, 1470-1475]. The BTE binding factor (BTEB) was present in both adult and fetal human livers. To examine the transcriptional activity of the CYP3A4 gene, DNA fragments in the 5'-flanking region of the gene were inserted in front of the simian virus 40 promoter and the chloramphenicol acetyltransferase structural gene, and the constructs were transfected in HepG2 cells. The analysis of the chloramphenicol acetyltransferase activity indicated that (a) specific element(s) which could bind with a factor(s) in livers was present in the 5'-flanking region of the CYP3A4 gene to show the transcriptional activity.

Trypanosoma congolense: Natural and Acquired Resistance in the Bovine

DTIC Science & Technology

1980-08-01

1CmTAR’V NOTES V It. KeY WOPOS (Cohitlue Wof, 70 sre s i N6deawy and Identify by block nismb.r) B3OVINE, S1,U!,VfVE, CHALIT.1(itN, THERAPY , GEOGRAPHICAL...Rmforol,.l WHICH REQUIRED TREATMENT TO SURVIVE WERE ALSO CHALLENGED AT INTERVALS AFTER THERAPY . THREE ANIMALS INFECTED FOR 49 TO 75 DAYS BEFORE TREATMENT...their iast patent parasitemia. Older animals which required treatment to survive were also challenged at Interval% miller therapy . Three animals

Flank Deformation Recorded during Cotopaxís Awakening in 2015

NASA Astrophysics Data System (ADS)

Mothes, Patricia A.; Nocquet, Jean-Mathieu; Yépez, Marco A.; Jarrín, Paúl A.; Ruiz, Mario C.; Gaunt, Elizabeth

2016-04-01

Cotopaxi, a large glacier-topped stratocone in the Ecuadorian Andes begin to display anomalous seismic activity in April, 2015 when the IGEPŃs 15 station seismic network registered an increase in long period seismic events which were located 3-12 km below the crater. Several weeks later a distinct inflationary pattern was observed at the VC1 tilt station, 6 km NE of the crater, where we recorded a steady ascent of 150 urads (daily rate 3.2 urads) through 01 June. The tilt rate tended to slow and displayed a start & stop tilt pattern through 01 August, when a strong positive trend again resumed. Subsequently, a strong positive tilt pattern was predominante and briefly stalled after the occurrence of 5 small explosions/strong emissions on 14 August, 2015. About September 1st and prior to the onset of a high-energy VT seismic swarm, a rapid onset of strong positive tilt is observed. Subsequently, even though 30-100 VT events were registered daily, the tilt pattern leveled off in November to December, presumably because the events were with magnitudes <1 and that the magma supply was waning? Five other tilt stations on the volcano are much less sensitive than the VC1 station and this probably reflects the ideal coupling of the VC1 tiltmeter to a thick lava flow, which descends from the summit. The seven station GPS network displayed a strong displacement to the NW-SW for the stations on the W-SW flanks and had accumulative horizontal changes of 1 cm with a maximum vertical displacement of 1 cm at stations on the S and E. The trends of stations on the NE flank, with their movement purely to the north and east are difficult to interpret, but may be related to a preferential movement upon an old avalanche scar surface and water lubrication. While the changes detected by GPS are small, they did increase through time and finally, like the tilt, leveled off in November, 2015. We believe that these pattern are the result of small batches of magma ascending up the conduit and provoking slope changes, however small, as recorded by these two methods. InSAR imagery, while not definitive, did not show coherent changes, implying that the volume is small. Ash accumulation from the mid August explosions and subsequent emissions have not surpassed 1 Mm3 (VEI =1) (B. Bernard, Pers. Comm, 2015). We believe that Cotopaxi has responded to small inputs of magma that rose to shallow levels in the conduit and some of it was erupted, while some doubtless remains in the conduit as a degassed plug that is forming microlites, based on the content of the latest ashes emitted in December and that were petrographically studied. Since both tiltmeter and GPS responses have coherency with the onset of displacements in April, 2015, we believe that these two methodologies will be informative for when a larger batch of magma enters into Cotopaxís edifice. InSAR will also compliment and provide valuable data to guide us in the progress of future intrusions.

Window type: 2x3 fixed multipaned steel window flanked by 1x3 ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

Window type: 2x3 fixed multipaned steel window flanked by 1x3 multipaned steel casements. Concrete sill and spandrel also illustrated. Building 43, facing east - Harbor Hills Housing Project, 26607 Western Avenue, Lomita, Los Angeles County, CA

Explosive eruption, flank collapse and megatsunami at Tenerife ca. 170 ka

PubMed Central

Paris, Raphaël; Bravo, Juan J. Coello; González, María E. Martín; Kelfoun, Karim; Nauret, François

2017-01-01

Giant mass failures of oceanic shield volcanoes that generate tsunamis potentially represent a high-magnitude but low-frequency hazard, and it is actually difficult to infer the mechanisms and dynamics controlling them. Here we document tsunami deposits at high elevation (up to 132 m) on the north-western slopes of Tenerife, Canary Islands, as a new evidence of megatsunami generated by volcano flank failure. Analyses of the tsunami deposits demonstrate that two main tsunamis impacted the coasts of Tenerife 170 kyr ago. The first tsunami was generated during the submarine stage of a retrogressive failure of the northern flank of the island, whereas the second one followed the debris avalanche of the subaerial edifice and incorporated pumices from an on-going ignimbrite-forming eruption. Coupling between a massive retrogressive flank failure and a large explosive eruption represents a new type of volcano-tectonic event on oceanic shield volcanoes and a new hazard scenario. PMID:28504256

Simultaneous Optimization of Tooth Flank Form of Involute Helical Gears in Terms of Both Vibration and Load Carrying Capacity

NASA Astrophysics Data System (ADS)

Komori, Masaharu; Kubo, Aizoh; Suzuki, Yoshitomo

The alignment condition of automotive gears changes considerably during operation due to the deformation of shafts, bearings, and gear box by transmission of load. Under such conditions, the gears are required to satisfy not only reliability in strength and durability under maximum loading conditions, but also low vibrational characteristics under light loading conditions during the cruising of a car. In this report, the characteristics of the optimum tooth flank form of gears in terms of both vibration and load carrying capacity are clarified. The local optimum tooth flank form appears in each excitation valley, where the vibrational excitation is low and the actual contact ratio takes a specific value. The influence of the choice of different local optimum solutions on the vibrational performance of the optimized gears is investigated. The practical design algorithm for the optimum tooth flank form of a gear set in terms of both vibration and load carrying capacity is then proposed and its result is evaluated by field experience.

Flank wear analysing of high speed end milling for hardened steel D2 using Taguchi Method

NASA Astrophysics Data System (ADS)

Hazza Faizi Al-Hazza, Muataz; Ibrahim, Nur Asmawiyah bt; Adesta, Erry T. Y.; Khan, Ahsan Ali; Abdullah Sidek, Atiah Bt.

2017-03-01

One of the main challenges for any manufacturer is how to decrease the machining cost without affecting the final quality of the product. One of the new advanced machining processes in industry is the high speed hard end milling process that merges three advanced machining processes: high speed milling, hard milling and dry milling. However, one of the most important challenges in this process is to control the flank wear rate. Therefore a analyzing the flank wear rate during machining should be investigated in order to determine the best cutting levels that will not affect the final quality of the product. In this research Taguchi method has been used to investigate the effect of cutting speed, feed rate and depth of cut and determine the best level s to minimize the flank wear rate up to total length of 0.3mm based on the ISO standard to maintain the finishing requirements.

Microhomology-mediated end joining induces hypermutagenesis at breakpoint junctions

PubMed Central

Li, Fuyang; Villarreal, Diana; Shim, Jae Hoon; Myung, Kyungjae; Shim, Eun Yong; Lee, Sang Eun

2017-01-01

Microhomology (MH) flanking a DNA double-strand break (DSB) drives chromosomal rearrangements but its role in mutagenesis has not yet been analyzed. Here we determined the mutation frequency of a URA3 reporter gene placed at multiple locations distal to a DSB, which is flanked by different sizes (15-, 18-, or 203-bp) of direct repeat sequences for efficient repair in budding yeast. Induction of a DSB accumulates mutations in the reporter gene situated up to 14-kb distal to the 15-bp MH, but more modestly to those carrying 18- and 203-bp or no homology. Increased mutagenesis in MH-mediated end joining (MMEJ) appears coupled to its slower repair kinetics and the extensive resection occurring at flanking DNA. Chromosomal translocations via MMEJ also elevate mutagenesis of the flanking DNA sequences 7.1 kb distal to the breakpoint junction as compared to those without MH. The results suggest that MMEJ could destabilize genomes by triggering structural alterations and increasing mutation burden. PMID:28419093

An experimental study of flank wear in the end milling of AISI 316 stainless steel with coated carbide inserts

NASA Astrophysics Data System (ADS)

Odedeyi, P. B.; Abou-El-Hossein, K.; Liman, M.

2017-05-01

Stainless steel 316 is a difficult-to-machine iron-based alloys that contain minimum of about 12% of chromium commonly used in marine and aerospace industry. This paper presents an experimental study of the tool wear propagation variations in the end milling of stainless steel 316 with coated carbide inserts. The milling tests were conducted at three different cutting speeds while feed rate and depth of cut were at (0.02, 0.06 and 01) mm/rev and (1, 2 and 3) mm, respectively. The cutting tool used was TiAlN-PVD-multi-layered coated carbides. The effects of cutting speed, cutting tool coating top layer and workpiece material were investigated on the tool life. The results showed that cutting speed significantly affected the machined flank wears values. With increasing cutting speed, the flank wear values decreased. The experimental results showed that significant flank wear was the major and predominant failure mode affecting the tool life.

Effects of vomeronasal organ removal on individual odor discrimination, sex-odor preference, and scent marking by female hamsters.

PubMed

Petrulis, A; Peng, M; Johnston, R E

1999-03-01

Removal of the vomeronasal organ (VNX) did not eliminate the ability of female hamsters to discriminate between individual male's flank gland or urine odors in a habituation/discrimination task nor did it impair preference for male odors over female odors from a distance. Vomeronasal organ removal did reduce overall levels of investigation of flank gland odor in the habituation/discrimination task. Although VNX females did not show severe impairments in the frequency of either flank or vaginal marking in response to odors, they did show an abnormal pattern of marking. VNX females, unlike shams, did not flank mark more to female odors than to male odors, nor did they vaginal mark more to male odors than to female odors. Thus, the vomeronasal organ in female hamsters appears to be important for differences in scent marking toward male and female odors, but is not essential for discrimination of individual odors or for preferences for male over female odors.

The effect of injection of high K+ solution into scala media.

PubMed

Fukazawa, T; Ohmura, M; Yagi, N

1987-01-01

Thirty guinea pig ears were studied to investigate the effect of endolymphatic hydrops on the cochlea. High K+ solution was injected into the scala media, and cochlear microphonics (CM) and endocochlear potential (EP) were observed before, during and after the injection. The CM amplitude decreased rapidly after injection, ending in a depressed plateau value. By contrast, EP remained almost unchanged. By changing the composition of the solution it was suggested that the effect of the injection was mechanical one, rather than biochemical. In three ears, spontaneous recovery of CM was observed during a relatively long interval after the injection. The meaning of these findings for the hearing loss in Meniere's disease is discussed.

Extraction and speciation of arsenic in lacustrine sediments

USGS Publications Warehouse

Ficklin, W.H.

1990-01-01

Arsenic was partially extracted with 4.OM hydrochloric acid, from samples collected at 25-cm intervals in a 350-cm column of sediment at Milltown Reservoir, Montana and from a 60-cm core of sediment collected at the Cheyenne River Embayment of Lake Oahe, South Dakota. The sediment in both reservoirs is highly contaminated with arsenic. The extracted arsenic was separated into As(III) and As(V) on acetate form Dowex 1-X8 ion-exchange resin with 0.12M HCl eluent. Residual arsenic was sequentially extracted with KClO3 and HCl. Arsenic was determined by graphite-furnace atomic-absorption spectrometry. The analytical results define oxidized and reduced zones in the sediment columns. ?? 1990.

Structure of Kilauea's southwest rift zone and western south flank defined by relocated earthquakes

NASA Astrophysics Data System (ADS)

Rinard, Bethany D.

This study is the first detailed seismic investigation of the southwest rift and western south flank of Kilauea Volcano. Earthquakes outline the tectonic and magmatic systems of the volcano. In this study, more than 4800 earthquakes from the years 1981--2001 were relocated with a double-difference method, and almost 500 were relocated with cross-correlation. The result is a much-improved image of Kilauea's south flank structure. The shallowest of the earthquakes on Kilauea (<5km) are usually related to magma movement, and occur almost exclusively in the actively intruded rift. The few tectonic earthquakes that occur at this depth are along the Koae and Hilina Fault systems. Focal mechanisms indicate that the shallow events on the Hilina system have [normal, right-lateral] oblique-slip motion. Beneath the entire south flank are earthquakes that occur on a decollement, located at a depth of 7--10km. The inland-dipping decollement structure is clearly imaged with this new data set. Earthquakes on the volcano's south flank normal faults appear to extend downward to the decollement. Earthquakes at intermediate depths image the decollement, a plane that dips inland. This is the boundary between the volcano and the old oceanic crust beneath it. Movement on faults at decollement depths of 7--10km have [right-lateral thrust] oblique-slip motion. When intrusions occur in the rift zones, the flank is forced seaward along the decollement. Since the decollement dips inland, the south flank must move up an incline as it slides seaward. Hawaii also experiences deep (>25km) earthquakes, which are the most intriguing events in this study. These earthquakes are significant because the Moho is located at a depth of 13--15km, so they are clearly occurring in the mantle. The deep events examined in this study are tectonic earthquakes, not attributable to melt migration. A high strain rate in the mantle, largely due to the geologically rapid formation of the island that has quickly increased the load on the underlying mantle, may account for the occurrence of these deep earthquakes. Focal mechanisms indicate [normal, right-lateral] oblique-slip motion on faults below 25km depth.

Growth history of Kilauea inferred from volatile concentrations in submarine-collected basalts

USGS Publications Warehouse

Coombs, Michelle L.; Sisson, Thomas W.; Lipman, Peter W.

2006-01-01

Major-element and volatile (H2O, CO2, S) compositions of glasses from the submarine flanks of Kilauea Volcano record its growth from pre-shield into tholeiite shield-stage. Pillow lavas of mildly alkalic basalt at 2600–1900 mbsl on the upper slope of the south flank are an intermediate link between deeper alkalic volcaniclastics and the modern tholeiite shield. Lava clast glasses from the west flank of Papau Seamount are subaerial Mauna Loa-like tholeiite and mark the contact between the two volcanoes. H2O and CO2 in sandstone and breccia glasses from the Hilina bench, and in alkalic to tholeiitic pillow glasses above and to the east, were measured by FTIR. Volatile saturation pressures equal sampling depths (10 MPa = 1000 m water) for south flank and Puna Ridge pillow lavas, suggesting recovery near eruption depths and/or vapor re-equilibration during down-slope flow. South flank glasses are divisible into low-pressure (CO2 <40 ppm, H2O < 0.5 wt.%, S <500 ppm), moderate-pressure (CO2 <40 ppm, H2O >0.5 wt.%, S 1000–1700 ppm), and high-pressure groups (CO2 >40 ppm, S  ∼1000 ppm), corresponding to eruption ≥ sea level, at moderate water depths (300–1000 m) or shallower but in disequilibrium, and in deep water (>1000 m). Saturation pressures range widely in early alkalic to strongly alkalic breccia clast and sandstone glasses, establishing that early Kīlauea's vents spanned much of Mauna Loa's submarine flank, with some vents exceeding sea level. Later south flank alkalic pillow lavas expose a sizeable submarine edifice that grew concurrent with nearby subaerial alkalic eruptions. The onset of the tholeiitic shield stage is marked by extension of eruptions eastward and into deeper water (to 5500 m) during growth of the Puna Ridge. Subaerial and shallow water eruptions from earliest Kilauea show that it is underlain shallowly by Mauna Loa, implying that Mauna Loa is larger, and Kilauea smaller, than previously recognized.Keywords

Investigating collapse structures in oceanic islands using magnetotelluric surveys: The case of Fogo Island in Cape Verde

NASA Astrophysics Data System (ADS)

Martínez-Moreno, F. J.; Monteiro Santos, F. A.; Madeira, J.; Pous, J.; Bernardo, I.; Soares, A.; Esteves, M.; Adão, F.; Ribeiro, J.; Mata, J.; Brum da Silveira, A.

2018-05-01

One of the most remarkable natural events on Earth are the large lateral flank collapses of oceanic volcanoes, involving volumes of rock exceeding tens of km3. These collapses are relatively frequent in recent geological times as supported by evidence found in the geomorphology of volcanic island edifices and associated debris flows deposited on the proximal ocean floor. The Island of Fogo in the Cape Verde archipelago is one of the most active and prominent oceanic volcanoes on Earth. The island has an average diameter of 25 km and reaches a maximum elevation of 2829 m above sea level (m a.s.l.) at Pico do Fogo, a young stratovolcano located within a summit depression open eastward due to a large lateral flank collapse. The sudden collapse of the eastern flank of Fogo Island produced a megatsunami 73 ky ago. The limits of the flank collapse were deduced as well from geomorphologic markers within the island. The headwall of the collapse scar is interpreted as either being located beneath the post-collapse volcanic infill of the summit depression or located further west, corresponding to the Bordeira wall that partially surrounds it. The magnetotelluric (MT) method provides a depth distribution of the ground resistivity obtained by the simultaneous measurement of the natural variations of the electric and magnetic field of the Earth. Two N-S magnetotelluric profiles were acquired across the collapsed area to determine its geometry and boundaries. The acquired MT data allowed the determination of the limits of the collapsed area more accurately as well as its morphology at depth and thickness of the post-collapse infill. According to the newly obtained MT data and the bathymetry of the eastern submarine flank of Fogo, the volume involved in the flank collapse is estimated in 110 km3. This volume -the first calculated onshore- stands between the previously published more conservative and excessive calculations -offshore- that were exclusively based in geomorphic evidence. The model for the summit depression proposing two caldera collapses preceding the collapse of the eastern flank of Fogo is supported by the MT data.

Spaced planar laminations formed by repetitive basal erosion and resurgence to high-sedimentation-rate regime: new insight from a bedform-like structures and laterally continuous exposures

NASA Astrophysics Data System (ADS)

Ishihara, Yoshiro; Yuri, Onishi; Tsuda, Keisuke; Yokokawa, Miwa

2017-04-01

Spaced planar laminations (SPL), or so-called traction carpet deposits, are frequently observed in deposits of sediment gravity flows. Several sedimentation models for a succession of inversely graded units have been suggested from field observations and flume experiments. The formation of the inversely graded unit could be summarized as follows: (1) abrupt sedimentation on freezing of an inversely graded layer, or (2) interruptions in flow causing a freezing of an inversely graded layer at the most basal part of flow. In either case, traction carpets as a bed load overlying the erosive boundary at the base of flow are required. Although some descriptions have reported SPLs forming antidune bedform-like structures and the association of SPLs with structureless massive deposits have not been clearly explained. In this study, we suggest a novel model of SPL formation by repetition of basal erosion and resurgence to high-sedimentation rates, based on detail examinations of SPLs both showing bedform-like structures and lateral extents of hundreds of meters. SPLs were investigated in the Mio-Pliocene Kiyosumi Formation in central Japan and the Miocene Aoshima Formation in southwest Japan. In a turbidite in the Kiyosumi Formation, SPLs show three mound-like structures, suggesting antidune bedforms with wavelengths of about 6 to 7 m. On the upcurrent flanks, SPLs show lenticular cross laminations or pinching out of units; those units do not show clear inverse grading. Rip-up mud clasts and relatively high-angle imbrications are also observed. On the other hand, SPLs on the downcurrent flanks show relatively clear inverse grading and transition downcurrent into a massive structureless bed. In the Aoshima Formation, SPLs with ca. 1 cm unit thickness continue approximately 50 m along a palaeocurrent direction without changes in thickness. These SPLs gradually transition upward into a massive structureless unit. From the observations described above, in addition to descriptions from previous studies, it is suggested that SPLs comprising mound-like bedforms exhibit erosive conditions in the upcurrent flanks and depositional conditions in the downcurrent flanks, whereas SPLs on flat sea-floor extensively maintain their structure. Also, massive structureless beds are observed when erosion did not occur. These facts indicate that SPLs are strongly associated with an erosional process at the base of sediment gravity flows under a supercritical flow condition. The formation of SPLs does not necessary require a traction carpet and they may reflect basal erosion with a lag deposit of fine-grained particles, followed by resurgence to conditions of high sedimentation rates and massive structureless bed deposition. Repetitions of inversely graded units could occur when basal shear stresses are changed by fluctuations of flow depth, such as internal waves in a sediment gravity flow. This model can explain the concurrence of massive structureless beds with SPLs and examples of bedform-like structures without a unit thickness control.

Flank and Lumbar Hernia Repair.

PubMed

Beffa, Lucas R; Margiotta, Alyssa L; Carbonell, Alfredo M

2018-06-01

Flank and lumbar hernias are challenging because of their rarity and anatomic location. Several challenges exist when approaching these specific abdominal wall defects, including location, innervation of the lateral abdominal wall musculature, and their proximity to bony landmarks. These hernias are confined by the costal margin, spine, and pelvic brim, which makes closure of the defect, including mesh placement, difficult. This article discusses the anatomy of lumbar and flank hernias, the various etiologies for these hernias, and the procedural steps for open and robotic preperitoneal approaches. The available clinical evidence regarding outcomes for various repair techniques is also reviewed. Copyright © 2018 Elsevier Inc. All rights reserved.

Comparison of flank modification on Ascraeus and Arsia Montes volcanoes, Mars

NASA Technical Reports Server (NTRS)

Zimbelman, James R.

1993-01-01

Geologic mapping of the Tharsis Montes on Mars is in progress as part of the Mars Geologic Mapping Program of NASA. Mapping of the southern flanks of Ascraeus Mons at 1:500,000 scale was undertaken first followed by detailed mapping of Arsia Mons; mapping of Pavonis Mons will begin later this year. Results indicate that each of the Tharsis volcanoes displays unique variations on the general 'theme' of a martian shield volcano. Here we concentrate on the flank characteristics on Ascraeus Mons and Arsia Mons, the northernmost and southernmost of the Tharsis Montes, as illustrative of the most prominent trends.

Distinct sources of injections in the polar cusp observed by Cluster

NASA Astrophysics Data System (ADS)

Escoubet, C. Philippe; Reme, Henri; Dunlop, Malcolm; Daly, Patrick; Laakso, Harri; Berchem, Jean; Richard, Robert; Taylor, Matthew; Trattner, Karlheinz; Grison, Benjamin; Dandouras, Iannis; Fazakerley, Andrew; Pitout, Frederic; Masson, Arnaud

The main process that injects solar wind plasma into the polar cusp is now generally accepted to be magnetic reconnection. Depending on the IMF direction, this process takes place equatorward (for IMF southward), poleward (for IMF northward) or on the dusk or dawn sides (for IMF azimuthal) of the cusp. We report a Cluster crossing on 5 January 2002 near the exterior cusp on the southern dusk side. The IMF was mainly azimuthal (IMF-By around -5 nT), the solar wind speed lower than usual around 280 km/s and the density around 5 cm-3. The four Cluster spacecraft had an elongated configuration near the magnetopause. C4 was the first spacecraft to enter the cusp around 19:52:04 UT, followed by C2 at 19:52:35 UT, C1 at 19:54:24 UT and C3 at 20:13:15 UT. C4 and C1 observed two ion energy dispersions at 20:10 UT and 20:40 UT and C3 at 20:35 UT and 21:15 UT. Using the time of flight technique on the upgoing and downgoing ions in the dispersions, we obtain an altitude of the sources of these ions between 14 and 20 RE. Using Tsyganenko model, these sources are located on the dusk flank, past the terminator. The first injection by C3 is seen at approximately the same time as the 2nd injection on C1 but their sources at the magnetopause were separated by more than 10 RE. This would imply that two distinct sources were active at the same time on the dusk flank of the magnetosphere.

Methane production from bicarbonate and acetate in an anoxic marine sediment

NASA Technical Reports Server (NTRS)

Crill, P. M.; Martens, C. S.

1986-01-01

Methane production from C-14 labeled bicarbonate and acetate was measured over the top 28 cm of anoxic Cape Lookout Bight sediments during the summer of 1983. The depth distribution and magnitude of summed radioisotopically determined rates compare well with previous measurements of total methane production and the sediment-water methane flux. Methane production from CO2 reduction and acetate fermentation accounts for greater than 80 percent of the total production rate and sediment-water flux. Methane production from bicarbonate was found to occur in all depth intervals sampled except those in the top 2 cm, whereas significant methane production from acetate only occurred at depths below 10 cm where sulfate was exhausted. Acetate provided 20 to 29 percent of the measured methane production integrated over the top 30 cm of the sediments.

FACILITY 713, LIVING ROOM SHOWING DIAMONDPANED WINDOWS FLANKING THE FIREPLACE, ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

FACILITY 713, LIVING ROOM SHOWING DIAMOND-PANED WINDOWS FLANKING THE FIREPLACE, AND LEADED-GLASS WINDOWS IN DINING ROOM IN RIGHT BACKGROUND, VIEW FACING SOUTHEAST. - Schofield Barracks Military Reservation, Central-Entry Single-Family Housing Type, Between Bragg & Grime Streets near Ayres Avenue, Wahiawa, Honolulu County, HI

Tissue culture-induced transpositional activity of mPing is correlated with cytosine methylation in rice

PubMed Central

Ngezahayo, Frédéric; Xu, Chunming; Wang, Hongyan; Jiang, Lily; Pang, Jinsong; Liu, Bao

2009-01-01

Background mPing is an endogenous MITE in the rice genome, which is quiescent under normal conditions but can be induced towards mobilization under various stresses. The cellular mechanism responsible for modulating the activity of mPing remains unknown. Cytosine methylation is a major epigenetic modification in most eukaryotes, and the primary function of which is to serve as a genome defense system including taming activity of transposable elements (TEs). Given that tissue-culture is capable of inducing both methylation alteration and mPing transposition in certain rice genotypes, it provides a tractable system to investigate the possible relationship between the two phenomena. Results mPing transposition and cytosine methylation alteration were measured in callus and regenerated plants in three rice (ssp. indica) genotypes, V14, V27 and R09. All three genotypes showed transposition of mPing, though at various frequencies. Cytosine methylation alteration occurred both at the mPing-flanks and at random loci sampled globally in callus and regenerated plants of all three genotypes. However, a sharp difference in the changing patterns was noted between the mPing-flanks and random genomic loci, with a particular type of methylation modification, i.e., CNG hypermethylation, occurred predominantly at the mPing-flanks. Pearson's test on pairwise correlations indicated that mPing activity is positively correlated with specific patterns of methylation alteration at random genomic loci, while the element's immobility is positively correlated with methylation levels of the mPing's 5'-flanks. Bisulfite sequencing of two mPing-containing loci showed that whereas for the immobile locus loss of CG methylation in the 5'-flank was accompanied by an increase in CHG methylation, together with an overall increase in methylation of all three types (CG, CHG and CHH) in the mPing-body region, for the active locus erasure of CG methylation in the 5'-flank was not followed by such a change. Conclusion Our results documented that tissue culture-induced mPing activity in rice ssp. indica is correlated with alteration in cytosine methylation patterns at both random genomic loci and the elements' flanks, while the stability of mPing positively correlates with enhanced methylation levels of both the flanks and probably the elements per se. Thus, our results implicate a possible role of cytosine methylation in maintaining mPing stability under normal conditions, and in releasing the element's activity as a consequence of epigenetic perturbation in a locus-specific manner under certain stress conditions. PMID:19604382

Cloud condensation nuclei over the Bay of Bengal during the Indian summer monsoon

NASA Astrophysics Data System (ADS)

Chate, D. M.; Waghmare, R. T.; Jena, C. K.; Gopalakrishnan, V.; Murugavel, P.; Ghude, Sachin D.; Kulkarni, Rachana; Devara, P. C. S.

2018-02-01

The first measurements of cloud condensation nuclei (CCN) at five supersaturations were carried out onboard the research vessel "Sagar Kanya" (cruise SK-296) from the south to the head-bay of the Bay of Bengal as part of the Continental Tropical Convergence Zone (CTCZ) Project during the Indian summer monsoon of 2012. In this paper, we assess the diurnal variation in CCN distributions at supersaturations from 0.2% to 1% (in steps of 0.2%) and the power-law fit at supersaturation of 1%. The diurnal pattern shows peaks in CCN concentration (NCCN) at supersaturations from 0.2% to 1% between 0600 and 0700 LST (local standard time, UTC+0530), with relatively low concentrations between 1200 and 1400 LST, followed by a peak at around 1800 LST. The power-law fit for the CCN distribution at different supersaturation levels relates the empirical exponent ( k) of supersaturation (%) and the N CCN at a supersaturation of 1%. The N CCN at a supersaturation of 0.4% is observed to vary from 702 cm-3 to 1289 cm-3, with a mean of 961±161 cm-3 (95% confidence interval), representing the CCN activity of marine air masses. Whereas, the mean N CCN of 1628±193 cm-3 at a supersaturation of 1% is higher than anticipated for the marine background. When the number of CCN spectra is 1293, the value of k is 0.57±0.03 (99% confidence interval) and its probability distribution shows cumulative counts significant at k ≈ 0.55±0.25. The results are found to be better at representing the features of the marine environment (103 cm-3 and k ≈ 0.5) and useful for validating CCN closure studies for Indian sea regions.

Identification of multiple loci for Alzheimer disease in a consanguineous Israeli-Arab community.

PubMed

Farrer, Lindsay A; Bowirrat, Abdalla; Friedland, Robert P; Waraska, Kristin; Korczyn, Amos D; Baldwin, Clinton T

2003-02-15

We have observed an unusually high prevalence of dementia of the Alzheimer type (DAT) in Wadi Ara, an inbred Arab community in northern Israel comprising approximately 850 persons over the age of 60 years. Family studies revealed that more than one-third of the DAT cases are members of one hamula (tribal group) within Wadi Ara. To map chromosomal loci contributing to DAT susceptibility, we conducted a 10 cM scan in a series of five cases and five controls selected from this hamula. Markers from 18 chromosomal regions showed significant allelic association with DAT (P<0.05). Locations on chromosomes 2, 9 and 10 remained significant after testing additional affected and non-demented individuals. Significant associations were also observed for markers on chromosome 12 which overlap with a locus implicated in previous genome scans. Analysis of allele frequency distributions for 12 markers spanning 20 cM on chromosome 9 narrowed the possible location of an DAT susceptibility gene to a 13 cM interval between D9S157 and D9S259 (most significant result: P = 2.3 x 10(-7)). Analysis of 14 markers spanning 24 cM on chromosome 12 narrowed the possible location to a 14 cM interval distal to the LRP1 locus (most significant result: P = 1.3 x 10(-6)). Evidence for linkage on chromosome 9 stemmed primarily from excess homozygosity of marker alleles in cases compared with controls, suggesting that the gene at this location behaves in either a recessive or additive fashion. The unique characteristics of this community together with the emergent human genome data should allow for the rapid identification of DAT genes in these candidate regions.

Efficient gusA transient expression in Porphyra yezoensis protoplasts mediated by endogenous beta-tubulin flanking sequences

NASA Astrophysics Data System (ADS)

Gong, Qianhong; Yu, Wengong; Dai, Jixun; Liu, Hongquan; Xu, Rifu; Guan, Huashi; Pan, Kehou

2007-01-01

Endogenous tubulin promoter has been widely used for expressing foreign genes in green algae, but the efficiency and feasibility of endogenous tubulin promoter in the economically important Porphyra yezoensis (Rhodophyta) are unknown. In this study, the flanking sequences of beta-tubulin gene from P. yezoensis were amplified and two transient expression vectors were constructed to determine their transcription promoting feasibility for foreign gene gusA. The testing vector pATubGUS was constructed by inserting 5'-and 3'-flanking regions ( Tub5' and Tub3') up-and down-stream of β-glucuronidase (GUS) gene ( gusA), respectively, into pA, a derivative of pCAT®3-enhancer vector. The control construct, pAGUSTub3, contains only gusA and Tub3'. These constructs were electroporated into P. yezoensis protoplasts and the GUS activities were quantitatively analyzed by spectrometry. The results demonstrated that gusA gene was efficiently expressed in P. yezoensis protoplasts under the regulation of 5'-flanking sequence of the beta-tubulin gene. More interestingly, the pATubGUS produced stronger GUS activity in P. yezoensis protoplasts when compared to the result from pBI221, in which the gusA gene was directed by a constitutive CaMV 35S promoter. The data suggest that the integration of P. yezoensis protoplast and its endogenous beta-tubulin flanking sequences is a potential novel system for foreign gene expression.

The limits of seaward spreading and slope instability at the continental margin offshore Mt Etna, imaged by high-resolution 2D seismic data

NASA Astrophysics Data System (ADS)

Gross, Felix; Krastel, Sebastian; Geersen, Jacob; Behrmann, Jan Hinrich; Ridente, Domenico; Chiocci, Francesco Latino; Bialas, Jörg; Papenberg, Cord; Cukur, Deniz; Urlaub, Morelia; Micallef, Aaron

2016-01-01

Mount Etna is the largest active volcano in Europe. Instability of its eastern flank is well documented onshore, and continuously monitored by geodetic and InSAR measurements. Little is known, however, about the offshore extension of the eastern volcano flank, defining a serious shortcoming in stability models. In order to better constrain the active tectonics of the continental margin offshore the eastern flank of the volcano, we acquired a new high-resolution 2D reflection seismic dataset. The data provide new insights into the heterogeneous geology and tectonics at the continental margin offshore Mt Etna. The submarine realm is characterized by different blocks, which are controlled by local- and regional tectonics. A compressional regime is found at the toe of the continental margin, which is bound to a complex basin system. Both, the clear link between on- and offshore tectonic structures as well as the compressional regime at the easternmost flank edge, indicate a continental margin gravitational collapse as well as spreading to be present at Mt Etna. Moreover, we find evidence for the offshore southern boundary of the moving flank, which is identified as a right lateral oblique fault north of Catania Canyon. Our findings suggest a coupled volcano edifice/continental margin instability at Mt Etna, demonstrating first order linkage between on- and offshore tectonic processes.

Rift flank segmentation, basin initiation and propagation: a neotectonic example from Lake Baikal

USGS Publications Warehouse

Agar, Susan M.; Klitgord, Kim D.

1995-01-01

New surficial data (field, Landsat TM and topography) define morpho-tectonic domains and rift flank segmentation in the Ol'khon region of the Central Baikal rift. Deformation, drainage and depositional patterns indicate a change in the locus of active extension that may relate to a recent (

Search for Doppler-shifted gamma-ray emission from SS 433 using the SMM spectrometer

NASA Technical Reports Server (NTRS)

Geldzahler, B. J.; Share, G. H.; Kinzer, R. L.; Magura, J.; Chupp, E. L.

1989-01-01

Data accumulated from 1980 to 1983 with the Gamma Ray Spectrometer aboard NASA's Solar Maximum Mission (SMM) satellite were searched for evidence of red and blue Doppler-shifted 1.37 MeV Mg-24 nuclear lines from SS 433. The SMM data base covers 270 days when SS 433 was in the field of view and includes periods of radio flaring and quiescence. No evidence was found for Doppler-shifted line emission in any of the spectra. The range of 3-sigma upper limits for individual 9 day integration periods was 0.0008-0.0023 photons/sq cm per sec for the blue beam, encompassing the reported about 1.5 MeV line, and 0.0008-0.002 photons/sq cm per sec for the red beam, encompassing the reported about 1.2 MeV line; the average 3-sigma upper limit in each beam for shifted about 1.37 MeV lines is 0.0015 photons/sq cm per sec for single 9 day integrations. The 3-sigma upper limit on 1.37 MeV gamma-ray emission over 23 9-day integration intervals for the red beam and 28 intervals for the blue beam is 0.0002 photons/sq cm per sec. These new limits from SMM can be reconciled with the HEAO 3 results only if SS 433 emits gamma radiation at or above the SMM sensitivity limit on rare occasions due to variable physical conditions in the system.

Electric charge requirements of pediatric cochlear implant recipients enrolled in the Childhood Development After Cochlear Implantation study.

PubMed

Zwolan, Teresa A; O'Sullivan, Mary Beth; Fink, Nancy E; Niparko, John K

2008-02-01

To evaluate mapping characteristics of children with cochlear implants who are enrolled in the Childhood Development After Cochlear Implantation (CDACI) multicenter study. Longitudinal evaluation during 24 months of speech processor maps of children with cochlear implants prospectively enrolled in the study. Six tertiary referral centers. One hundred eighty-eight children enrolled in the CDACI study who were 5 years old or younger at the time of enrollment. Of these children, 184 received unilateral implants, and 4 received simultaneous bilateral implants. Children attended regular mapping sessions at their implant clinic as part of the study protocol. Maps were examined for each subject at 4 different time intervals: at device activation and 6, 12, and 24 months postactivation. Mean C/M levels (in charge per phase) were compared for 4 different time intervals, for 3 different devices, for 6 different implant centers, and for children with normal and abnormal cochleae. All 3 types of implant devices demonstrate significant increases in C/M levels between device activation and the 24-month appointment. Significant differences in mean C/M levels were noted between devices. Children with cochlear anomalies demonstrate significantly greater C/M levels than children with normal cochleae. The CDACI study has enabled us to evaluate the mapping characteristics of pediatric patients who use 3 different devices and were implanted at a variety of implant centers. Analysis of such data enables us to better understand the mapping characteristics of children with cochlear implants.

Evaluation of Direct and Indirect Methods of Sub-Neoglottic Pressure Measurement in Tracheoesophageal Speakers: A Systematic Review and Meta-Analysis.

PubMed

Sheela, Shekaraiah; Aithal, Venkataraja U; Rajashekhar, Bellur; Lewis, Melissa Glenda

2016-01-01

Tracheoesophageal (TE) prosthetic voice is one of the voice restoration options for individuals who have undergone a total laryngectomy. Aerodynamic analysis of the TE voice provides insight into the physiological changes that occur at the level of the neoglottis with voice prosthesis in situ. The present study is a systematic review and meta-analysis of sub-neoglottic pressure (SNP) measurement in TE speakers by direct and indirect methods. The screening of abstracts and titles was carried out for inclusion of articles using 10 electronic databases spanning the period from 1979 to 2016. Ten articles which met the inclusion criteria were considered for meta-analysis with a pooled age range of 40-83 years. The pooled mean SNP obtained from the direct measurement method was 53.80 cm H2O with a 95% confidence interval of 21.14-86.46 cm H2O, while for the indirect measurement method, the mean SNP was 23.55 cm H2O with a 95% confidence interval of 19.23-27.87 cm H2O. Based on the literature review, the various procedures followed for direct and indirect measurements of SNP contributed to a range of differences in outcome measures. The meta-analysis revealed that the "interpolation method" for indirect estimation of SNP was the most acceptable and valid method in TE speakers. © 2017 S. Karger AG, Basel.

Volcanism and Fluvio-Glacial Processes on the Interior Layered Deposits of Valles Marineris, Mars?

NASA Astrophysics Data System (ADS)

Chapman, M. G.

2005-12-01

The Interior Layered Deposits (ILDs) in Valles Marineris have been suggested to be possible sub-ice volcanoes. Recent images also show evidence of possible fluvio-glacial processes on the ILDs and hence volcano/ice/water interaction. For example, Mars Express Mission anaglyph from Orbit 334 of central Ophir and Candor Chasmata, THEMIS image V10551002, and MOC images E1700142 and E190020 show 2 ILD mounds in central Candor Chasma that have been sheared off at approximately equal elevations by some material that has been subsequently removed. Level shearing of ILD rock materials and subsequent removal of the abrasive material, suggest ice erosion and glacial processes because glacial ice is mobile enough to grind the rock and can melt away. Another adjacent ILD mound in Central Candor shows an abrupt flank termination and damming of material, rather than flank scour. The dammed material appears to be layers piled up in a ridge at the ILD base. This relation is observed on the HRSC anaglyph and MOC images E0101343 and E201146. Another ILD in Melas Chasma, seen on MOC image M0804981, shows lobes of flank material that terminate along a lineation; possibly suggesting lobe confinement against subsequently removed material. This morphology can also be observed on the flank of the Gangis Chasma ILD in MOC image M0705587. A possible terrestrial volcanic analog for this ILD flank morphology is the Helgafell hyaloclasitic ridge (tindar) in Iceland (Chapman et al., 2004), the eastern flank of which has a linear termination interpreted as largely unmodified and caused by hyalotuff material banked against a former ice wall that has since melted away (Schopka et al., 2003). Glacial shearing of some ILDs and confined banking of other ILDs suggest that these mounds formed at different times, as the sheared ILD likely predated ice and the confined ILD may have formed concurrently with ice. Alternatively, the banking may have been due to lack of shear forces (static ice) and confined post-depositional avalanche deposits. However, exposed in the banked cliff faces are near horizontal bedding planes that can be traced upslope into angled flank layers; a relation that may suggest ice concurrent with volcanic ILD formation (Chapman and Smellie, in press). In addition to glacial processes, many Mars ILDs show fluvial gullies cut into mostly low lying flank deposits. Gullies are eroded into all sides of the ILDs including their north-facing slopes, so solar heating likely did not generate the gullies. Although formal work on the subject is lacking, ongoing terrestrial observation by the author (on an edifice north of Helgafell and in Gjalp eruption films) indicate fluvial erosion of subglacial volcanoes on Earth may be concurrent with their formation, occurring after edifices rise above their surrounding ice-confined meltwater lake. Remnant ice on the top of the edifices can melt to generate streams that erode the growing volcanic flanks.

Preliminary assessment of the state of CO2 soil degassing on the flanks of Gede volcano (West Java, Indonesia)

NASA Astrophysics Data System (ADS)

Kunrat, S. L.; Schwandner, F. M.

2013-12-01

Gede Volcano (West Java) is part of an andesitic stratovolcano complex consisting of Pangrango in the north-west and Gede in the south-east. The last recorded eruptive activity was a phreatic subvolcanian ash eruption in 1957. Current activity is characterized by episodic swarms at 2-4 km depth, and low-temperature (~160°C) crater degassing in two distinct summit crater fumarolic areas. Hot springs occur in the saddle between the Gede and Pangrango edifice, as well as on the NE flank base. The most recent eruptive events produced pyroclastic material, their flow deposits concentrate toward the NE. A collaborative effort between the Center for Volcanology and Geological Hazard Mitigation (CVGHM), Geological Agency and the Earth Observatory of Singapore (EOS) is since 2010 aimed at upgrading the geophysical and geochemical monitoring network at Gede Volcano. To support the monitoring instrumentation upgrades under way, surveys of soil CO2 degassing have been performed on the flanks of Gede, in circular and radial traverses.The goal was to establish a spatial distribution of flank CO2 fluxes, and to allow smart siting for continuous gas monitoring stations. Crater fluxes were not surveyed, as its low-temperature hydrothermal system is likely prone to large hydraulic changes in this tropical environment, resulting in variable permeability effects that might mask signals from deeper reservoir or conduit degassing. The high precipitation intensity in the mountains of tropical Java pose challenges to this method, since soil gas permeability is largely controlled by soil moisture content. Simultaneous soil moisture measurements were undertaken. The soil CO2 surveys were carried out using a LI-8100A campaign flux chamber instrument (LICOR Biosciences, Lincoln, Nebraska). This instrument has a very precise and highly stable sensor and an atmospheric pressure equilibrator, making it highly sensitive to low fluxes. It is the far superior choice for higher precision low-flux flank surveys in tropical environments. The mean flank fluxes measured were 19.8 g/m2/day in 2011, 11.7 g/m2/day in 2012 and 7.6 g/m2/day in early 2013. The mean flank flux for all the surveys is 17.9 g/m2/day. Statistical analysis of the data set reveals at least three distinct flux populations. Results from 2011, 2012 and 2013 indicate that flank fluxes were as high as 112.5g/m2/day, suggesting recent intrusive activity. The spatial distribution of fluxes indicates a strong focus on the NE sector. This finding appears concurrent with an area previously documented as continuously subsiding and filled with recent pyroclastic deposits (Philiboisan et al.2011, G3 Vol.12(11), Fig.15). The surveys also permit selection and validation of sites for continuous CO2 monitoring stations, representing medium and low flank flux populations.

High-resolution digital elevation model of Mount St. Helens crater and upper North Fork Toutle River basin, Washington, based on an airborne lidar survey of September 2009

USGS Publications Warehouse

Mosbrucker, Adam

2014-01-01

The lateral blast, debris avalanche, and lahars of the May 18th, 1980, eruption of Mount St. Helens, Washington, dramatically altered the surrounding landscape. Lava domes were extruded during the subsequent eruptive periods of 1980–1986 and 2004–2008. More than three decades after the emplacement of the 1980 debris avalanche, high sediment production persists in the North Fork Toutle River basin, which drains the northern flank of the volcano. Because this sediment increases the risk of flooding to downstream communities on the Toutle and Cowlitz Rivers, the U.S. Army Corps of Engineers (USACE), under the direction of Congress to maintain an authorized level of flood protection, built a sediment retention structure on the North Fork Toutle River in 1989 to help reduce this risk and to prevent sediment from clogging the shipping channel of the Columbia River. From September 16–20, 2009, Watershed Sciences, Inc., under contract to USACE, collected high-precision airborne lidar (light detection and ranging) data that cover 214 square kilometers (83 square miles) of Mount St. Helens and the upper North Fork Toutle River basin from the sediment retention structure to the volcano's crater. These data provide a digital dataset of the ground surface, including beneath forest cover. Such remotely sensed data can be used to develop sediment budgets and models of sediment erosion, transport, and deposition. The U.S. Geological Survey (USGS) used these lidar data to develop digital elevation models (DEMs) of the study area. DEMs are fundamental to monitoring natural hazards and studying volcanic landforms, fluvial and glacial geomorphology, and surface geology. Watershed Sciences, Inc., provided files in the LASer (LAS) format containing laser returns that had been filtered, classified, and georeferenced. The USGS produced a hydro-flattened DEM from ground-classified points at Castle, Coldwater, and Spirit Lakes. Final results averaged about five laser last-return points per square meter. As reported by Watershed Sciences, Inc., vertical accuracy is 10 centimeters (cm) at the 95-percent confidence interval on bare road surfaces; however, over natural terrain, USGS found vertical accuracy to be 10–50 cm. This USGS data series contains the bare-earth lidar data as 1- and 10-meter (m) resolution Esri grid files. Digital-elevation data can be downloaded (1m_DEM.zip and 10m_DEM.zip), as well as a 1-m resolution hillshade image with pyramids (1m_hillshade.zip). These geospatial data files require geographic information system (GIS) software for viewing.

27 CFR 9.35 - Edna Valley.

Code of Federal Regulations, 2014 CFR

2014-04-01

... 600-foot contour line of the southwestern flank of the Santa Lucia Mountain Range; (7) Thence in a... South, Range 12 East. (1) From the beginning point, the boundary runs southwesterly along San Luis... the intersection with the 400-foot contour line of the northeastern flank of the San Luis Range; (3...

27 CFR 9.35 - Edna Valley.

Code of Federal Regulations, 2012 CFR

2012-04-01

... 600-foot contour line of the southwestern flank of the Santa Lucia Mountain Range; (7) Thence in a... South, Range 12 East. (1) From the beginning point, the boundary runs southwesterly along San Luis... the intersection with the 400-foot contour line of the northeastern flank of the San Luis Range; (3...

27 CFR 9.35 - Edna Valley.

Code of Federal Regulations, 2013 CFR

2013-04-01

... 600-foot contour line of the southwestern flank of the Santa Lucia Mountain Range; (7) Thence in a... South, Range 12 East. (1) From the beginning point, the boundary runs southwesterly along San Luis... the intersection with the 400-foot contour line of the northeastern flank of the San Luis Range; (3...

Feature Integration across Space, Time, and Orientation

ERIC Educational Resources Information Center

Otto, Thomas U.; Ogmen, Haluk; Herzog, Michael H.

2009-01-01

The perception of a visual target can be strongly influenced by flanking stimuli. In static displays, performance on the target improves when the distance to the flanking elements increases--presumably because feature pooling and integration vanishes with distance. Here, we studied feature integration with dynamic stimuli. We show that features of…

Window type: paired 3x2 multipaned steel window flanked by 1x3 ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

Window type: paired 3x2 multipaned steel window flanked by 1x3 multipaned steel casements, breaking building corner. Broad overhanging eave also illustrated. Second story detail. Building 13, facing east - Harbor Hills Housing Project, 26607 Western Avenue, Lomita, Los Angeles County, CA

Window type: 4x4 multipaned steel window flanked by 1x4 multipaned ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

Window type: 4x4 multipaned steel window flanked by 1x4 multipaned steel, casements. Concrete stoop, entry overhang and pipe rail detail also illustrated. Building 36, facing northwest - Harbor Hills Housing Project, 26607 Western Avenue, Lomita, Los Angeles County, CA

A genome-wide linkage study of mammographic density, a risk factor for breast cancer

PubMed Central

2011-01-01

Introduction Mammographic breast density is a highly heritable (h2 > 0.6) and strong risk factor for breast cancer. We conducted a genome-wide linkage study to identify loci influencing mammographic breast density (MD). Methods Epidemiological data were assembled on 1,415 families from the Australia, Northern California and Ontario sites of the Breast Cancer Family Registry, and additional families recruited in Australia and Ontario. Families consisted of sister pairs with age-matched mammograms and data on factors known to influence MD. Single nucleotide polymorphism (SNP) genotyping was performed on 3,952 individuals using the Illumina Infinium 6K linkage panel. Results Using a variance components method, genome-wide linkage analysis was performed using quantitative traits obtained by adjusting MD measurements for known covariates. Our primary trait was formed by fitting a linear model to the square root of the percentage of the breast area that was dense (PMD), adjusting for age at mammogram, number of live births, menopausal status, weight, height, weight squared, and menopausal hormone therapy. The maximum logarithm of odds (LOD) score from the genome-wide scan was on chromosome 7p14.1-p13 (LOD = 2.69; 63.5 cM) for covariate-adjusted PMD, with a 1-LOD interval spanning 8.6 cM. A similar signal was seen for the covariate adjusted area of the breast that was dense (DA) phenotype. Simulations showed that the complete sample had adequate power to detect LOD scores of 3 or 3.5 for a locus accounting for 20% of phenotypic variance. A modest peak initially seen on chromosome 7q32.3-q34 increased in strength when only the 513 families with at least two sisters below 50 years of age were included in the analysis (LOD 3.2; 140.7 cM, 1-LOD interval spanning 9.6 cM). In a subgroup analysis, we also found a LOD score of 3.3 for DA phenotype on chromosome 12.11.22-q13.11 (60.8 cM, 1-LOD interval spanning 9.3 cM), overlapping a region identified in a previous study. Conclusions The suggestive peaks and the larger linkage signal seen in the subset of pedigrees with younger participants highlight regions of interest for further study to identify genes that determine MD, with the goal of understanding mammographic density and its involvement in susceptibility to breast cancer. PMID:22188651

Climatic change and evaporative processes in the development of Common Era hypersaline lakes, East Antarctica: A study of Lake Suribati

NASA Astrophysics Data System (ADS)

Nakashima, H.; Seto, K.; Katsuki, K.; Kaneko, H.; yamada, K.; Imura, S.; Dettman, D. L.

2011-12-01

The Antarctic continent was uplifted by glacioisostatic rebound due to the regression of ice sheets after the last glacial period. Today's saline lakes were formed in shallow basins originally below sea level. Antarctic hypersaline lakes are formed by concentration of isolated seawater bodies as affected by recent climate change. Many saline lakes are found in the ice-free area of the Soya coast, East Antarctica. Lake Suribati is located in Sukarvsnes on the Soya coast. It is a hypersaline lake with maximum salinity ~200 psu, and an observable stable halocline at 7~12m depth. This study uses Lake Suribati sediment core Sr4C-01, collected by the 46th Japanese Antarctica Research Expedition, to examine the relationship of climatic change to evaporative processes and solute concentration in Lake Suribati in the Common Era. Sr4C-01 core was collected at 9.53m water depth in Lake Suribati in 2005 (core length is 63cm). This core primarily consists of black mud and laminated black organic mud. In the interval from 10 to 24cm below the sediment surface evaporite crystals occur. The age of the Sr4C-01 core bottom is estimated to be ~3,500 cal yrs BP, based on AMS carbon-14 dating at 6 core horizons. The evaporite crystals were indentified as aragonite based on XRD. Total inorganic carbon (TIC) content is low, around 0.5%, throughout the Sr4C-01 core, with higher values, approximately 1~4%, in two intervals, 57~52cm and 29~10cm core depth. Variation in CaO content tracks TIC content. We suggest that synchronous change in CaO and TIC contents indicate the vertical change in the amount of aragonite. Two intervals of evaporite precipition imply two intervals of evaporation and concentration of lake water. Hypersaline lake conditions did not occur soon after the isolation from the sea, rather these occurred under repeated concentration and dilution of lake water. Dilution of saline lake water could occur through the inflow of melt water from local snow or ice, indicating a warm climate interval. During cool periods, local snow and ice sheet may have remained frozen. In this case, lake water volume would decrease by sublimation from the frozen lake surface, leading to salt concentration. Based on MgO and Na2O content data, we suggest that other Mg and Na evaporites occur in the core. If such evaporates can be identified, a detailed solute concentration process can be described. Analysis of evaporites in sediment core from Antarctic hypersaline lakes have great potential as proxy indicators for the study of climate change in Antarctica.

Intraoperative protective mechanical ventilation and risk of postoperative respiratory complications: hospital based registry study.

PubMed

Ladha, Karim; Vidal Melo, Marcos F; McLean, Duncan J; Wanderer, Jonathan P; Grabitz, Stephanie D; Kurth, Tobias; Eikermann, Matthias

2015-07-14

To evaluate the effects of intraoperative protective ventilation on major postoperative respiratory complications and to define safe intraoperative mechanical ventilator settings that do not translate into an increased risk of postoperative respiratory complications. Hospital based registry study. Academic tertiary care hospital and two affiliated community hospitals in Massachusetts, United States. 69,265 consecutively enrolled patients over the age of 18 who underwent a non-cardiac surgical procedure between January 2007 and August 2014 and required general anesthesia with endotracheal intubation. Protective ventilation, defined as a median positive end expiratory pressure (PEEP) of 5 cmH2O or more, a median tidal volume of less than 10 mL/kg of predicted body weight, and a median plateau pressure of less than 30 cmH2O. Composite outcome of major respiratory complications, including pulmonary edema, respiratory failure, pneumonia, and re-intubation. Of the 69,265 enrolled patients 34,800 (50.2%) received protective ventilation and 34,465 (49.8%) received non-protective ventilation intraoperatively. Protective ventilation was associated with a decreased risk of postoperative respiratory complications in multivariable regression (adjusted odds ratio 0.90, 95% confidence interval 0.82 to 0.98, P=0.013). The results were similar in the propensity score matched cohort (odds ratio 0.89, 95% confidence interval 0.83 to 0.97, P=0.004). A PEEP of 5 cmH2O and median plateau pressures of 16 cmH2O or less were associated with the lowest risk of postoperative respiratory complications. Intraoperative protective ventilation was associated with a decreased risk of postoperative respiratory complications. A PEEP of 5 cmH2O and a plateau pressure of 16 cmH2O or less were identified as protective mechanical ventilator settings. These findings suggest that protective thresholds differ for intraoperative ventilation in patients with normal lungs compared with those used for patients with acute lung injury. © Ladha et al 2015.

Repeatability of Central and Peripheral Pulse Wave Velocity Measures: The Atherosclerosis Risk in Communities (ARIC) Study

PubMed Central

Tanaka, Hirofumi; Palta, Priya; Patel, Mehul D.; Camplain, Ricky; Couper, David; Cheng, Susan; Al Qunaibet, Ada; Poon, Anna K.; Heiss, Gerardo

2016-01-01

BACKGROUND Arterial stiffness measures are emerging tools for risk assessment and stratification for hypertension and cardiovascular disease (CVD). Carotid-femoral pulse wave velocity (cfPWV) is an established measure of central arterial stiffness. Other measures of PWV include femoral-ankle (faPWV), a measure of peripheral stiffness, and brachial-ankle PWV (baPWV), a composite measure of central and peripheral stiffness. Repeatability of central, peripheral, and composite PWV measures has not been adequately examined or compared. METHODS Participants (n = 79; mean age 75.7 years; USA) from a repeatability study nested within the Atherosclerosis Risk in Communities (ARIC) Study visit 5 (2011–2013) underwent 2 standardized visits, 4–8 weeks apart. Trained technicians obtained 2 PWV measurements at each visit using the VP-1000 Plus system. We calculated the intraclass correlation coefficient (ICC), SE of measurement, and minimal detectable change (MDC95; 95% confidence interval) and difference (MDD). RESULTS The ICCs and 95% confidence intervals (95% CIs) were 0.70 (0.59, 0.81) for cfPWV, 0.84 (0.78, 0.90) for baPWV, and 0.69 (0.59, 0.79) for faPWV. The MDC95 between repeat measures within an individual was 411.0cm/s for cfPWV, 370.6cm/s for baPWV, and 301.4cm/s for faPWV. The MDD for 2 independent samples of 100 per group was 139.3cm/s for cfPWV, 172.3cm/s for baPWV, and 100.4cm/s for faPWV. CONCLUSIONS Repeatability was acceptable for all PWV measures in a multicenter, population-based study of older adults and supports its use in epidemiologic studies. Quantifying PWV measurement variation is critical for applications to risk assessment and stratification and eventual translation to clinical practice. PMID:26232036

Analysis of chromosome 22 deletions in neurofibromatosis type 2-related tumors

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wolff, R.K.; Frazer, K.A.; Jackler, R.K.

The neurofibromatosis type 2 (NF2) gene has been hypothesized to be a recessive tumor suppressor, with mutations at the same locus on chromosome 22 that lead to NF2 also leading to sporadic tumors of the types seen in NF2. Flanking markers for this gene have previously been defined as D22S1 centromeric and D22S28 telomeric. Identification of subregions of this interval that are consistently rearranged in the NF2-related tumors would aid in better defining the disease locus. To this end, the authors have compared tumor and constitutional DNAs, isolated from 39 unrelated patients with sporadic and NF2-associated acoustic neuromas, meningiomas, schwannomas,more » and ependymomas, at eight polymorphic loci on chromosome 22. Two of the tumors studied revealed loss-of-heterozygosity patterns, which is consistent with the presence of chromosome 22 terminal deletions. By using additional polymorphic markers, the terminal deletion breakpoint found in one of the tumors, an acoustic neuroma from an NF2 patient, was mapped within the previously defined NF2 region. The breakpoint occurred between the haplotyped markers D22S41/D22S46 and D22S56. This finding redefines the proximal flanking marker and localizes the NF2 gene between markers D22S41/D22S46 and D22S28. In addition, the authors identified a sporadic acoustic neuroma that reveals a loss-of-heterozygosity pattern consistent with mitotic recombination or deletion and reduplication, which are mechanisms not previously seen in studies of these tumors. This finding, while inconsistent with models of tumorigenesis that invoke single deletions and their gene-dosage effects, lends further support to the recessive tumor-suppressor model. 33 refs., 2 figs., 1 tab.« less

Space-time analysis of gravitropism in etiolated Arabidopsis hypocotyls using bioluminescence imaging of the IAA19 promoter fusion with a destabilized luciferase reporter.

PubMed

Yamamoto, Kotaro T; Watahiki, Masaaki K; Matsuzaki, Jun; Satoh, Soichirou; Shimizu, Hisayo

2017-07-01

Imaging analysis was carried out during the gravitropic response of etiolated Arabidopsis hypocotyls, using an IAA19 promoter fusion of destabilized luciferase as a probe. From the bright-field images we obtained the local deflection angle to the vertical, A, local curvature, C, and the partial derivative of C with respect to time, [Formula: see text]. These were determined every 19.9 µm along the curvilinear length of the hypocotyl, at ~10 min intervals over a period of ~6 h after turning hypocotyls through 90° to the horizontal. Similarly from the luminescence images we measured the luminescence intensity of the convex and concave flanks of the hypocotyl as well as along the median of the hypocotyl, to determine differential expression of auxin-inducible IAA19. Comparison of these parameters as a function of time and curvilinear length shows that the gravitropic response is composed of three successive elements: the first and second curving responses and a decurving response (autostraightening). The maximum of the first curving response occurs when A is 76° along the entire length of the hypocotyl, suggesting that A is the sole determinant in this response; in contrast, the decurving response is a function of both A and C, as predicted by the newly-proposed graviproprioception model (Bastien et al., Proc Natl Acad Sci USA 110:755-760, 2013). Further, differential expression of IAA19, with higher expression in the convex flank, is observed at A = 44°, and follows the Sachs' sine law. This also suggests that IAA19 is not involved in the first curving response. In summary, the gravitropic response of Arabidopsis hypocotyls consists of multiple elements that are each determined by separate principles.

Distributed and Localized Deformation Along the Lebanese Restraining Bend from Geomorphic Observations and Modeling

NASA Astrophysics Data System (ADS)

Goren, L.; Castelltort, S.; Klinger, Y.

2014-12-01

The Dead Sea Fault System changes its orientation across Lebanon and forms a restraining bend. The oblique deformation along the Lebanese restraining bend is characterized by a complex suite of tectonic structures, among which, the Yammouneh Fault (YF), is believed to be the main strand that relays deformation from the southern section to the northern section of the Dead Sea Fault System. However, uncertainties regarding slip rates and strain partitioning in Lebanon still prevail. Here, we use morphometric analysis together with analytical and numerical models to constrain rates and modes of distributed and localized deformation along the Lebanese restraining bend.The rivers that drain the western flank of Mount Lebanon show a consistent counterclockwise rotation with respect to an expected orogen perpendicular orientation. Moreover, a pattern of divide disequilibrium in between these rivers emerges from an application of the χ mapping technique, which aims at estimating the degree of geometrical and topological disequilibrium in river networks. These geometrical patterns are compatible with simulation results using a landscape evolution model, which imposes a distributed velocity field along a domain that represents the western flank of Mount Lebanon. We further develop an analytical model that relates the river orientation to a set of kinematic parameters that represents a combined pure and simple shear strain field, and we find the parameters that best explain the present orientation of the western Lebanon rivers. Our results indicate that distributed deformation to the west of the YF takes as much as 30% of the relative Arabia-Sinai plate velocity since the late Miocene, and that the average slip rate along the YF during the same time interval has been 3.8-4.4 mm/yr. The theoretical model can further explain the inferred rotation from Paleomagnetic measurements.

Analysis of chromosome 22 deletions in neurofibromatosis type 2-related tumors.

PubMed

Wolff, R K; Frazer, K A; Jackler, R K; Lanser, M J; Pitts, L H; Cox, D R

1992-09-01

The neurofibromatosis type 2 (NF2) gene has been hypothesized to be a recessive tumor suppressor, with mutations at the same locus on chromosome 22 that lead to NF2 also leading to sporadic tumors of the types seen in NF2. Flanking markers for this gene have previously been defined as D22S1 centromeric and D22S28 telomeric. Identification of subregions of this interval that are consistently rearranged in the NF2-related tumors would aid in better defining the disease locus. To this end, we have compared tumor and constitutional DNAs, isolated from 39 unrelated patients with sporadic and NF2-associated acoustic neuromas, meningiomas, schwannomas, and ependymomas, at eight polymorphic loci on chromosome 22. Two of the tumors studied revealed loss-of-heterozygosity patterns, which is consistent with the presence of chromosome 22 terminal deletions. By using additional polymorphic markers, the terminal deletion breakpoint found in one of the tumors, an acoustic neuroma from an NF2 patient, was mapped within the previously defined NF2 region. The breakpoint occurred between the haplotyped markers D22S41/D22S46 and D22S56. This finding redefines the proximal flanking marker and localizes the NF2 gene between markers D22S41/D22S46 and D22S28. In addition, we identified a sporadic acoustic neuroma that reveals a loss-of-heterozygosity pattern consistent with mitotic recombination or deletion and reduplication, which are mechanisms not previously seen in studies of these tumors. This finding, while inconsistent with models of tumorigenesis that invoke single deletions and their gene-dosage effects, lends further support to the recessive tumor-suppressor model.

Analysis of chromosome 22 deletions in neurofibromatosis type 2-related tumors.

PubMed Central

Wolff, R K; Frazer, K A; Jackler, R K; Lanser, M J; Pitts, L H; Cox, D R

1992-01-01

The neurofibromatosis type 2 (NF2) gene has been hypothesized to be a recessive tumor suppressor, with mutations at the same locus on chromosome 22 that lead to NF2 also leading to sporadic tumors of the types seen in NF2. Flanking markers for this gene have previously been defined as D22S1 centromeric and D22S28 telomeric. Identification of subregions of this interval that are consistently rearranged in the NF2-related tumors would aid in better defining the disease locus. To this end, we have compared tumor and constitutional DNAs, isolated from 39 unrelated patients with sporadic and NF2-associated acoustic neuromas, meningiomas, schwannomas, and ependymomas, at eight polymorphic loci on chromosome 22. Two of the tumors studied revealed loss-of-heterozygosity patterns, which is consistent with the presence of chromosome 22 terminal deletions. By using additional polymorphic markers, the terminal deletion breakpoint found in one of the tumors, an acoustic neuroma from an NF2 patient, was mapped within the previously defined NF2 region. The breakpoint occurred between the haplotyped markers D22S41/D22S46 and D22S56. This finding redefines the proximal flanking marker and localizes the NF2 gene between markers D22S41/D22S46 and D22S28. In addition, we identified a sporadic acoustic neuroma that reveals a loss-of-heterozygosity pattern consistent with mitotic recombination or deletion and reduplication, which are mechanisms not previously seen in studies of these tumors. This finding, while inconsistent with models of tumorigenesis that invoke single deletions and their gene-dosage effects, lends further support to the recessive tumor-suppressor model. Images Figure 1 Figure 2 PMID:1496981

An evaluation of fibrin tissue adhesive concentration and application thickness on skin graft survival.

PubMed

O'Grady, K M; Agrawal, A; Bhattacharyya, T K; Shah, A; Toriumi, D M

2000-11-01

To examine the effects of fibrinogen concentration and application thickness of fibrin tissue adhesive on skin graft survival. Prospective controlled study. Ten domestic pigs were included in the study. A 20 x 5-cm area of skin was harvested bilaterally along the flanks of the animals using a Padgett dermatome. The harvested grafts were trimmed into four 4 x 4-cm squares. Donor sites were treated according to group assignment and the non-meshed grafts were placed on the side opposite their initial orientation and secured with staples. Both single- and multiple-donor human fibrin tissue adhesive preparations, with low and high average fibrinogen concentrations of 30 mg/mL and 60 mg/ mL, were used. Adhesive preparations were applied in either a thin layer (0.015 mL/cm2) or a thick layer (0.06 mL/cm2) using a spray applicator. A constant thrombin concentration of 10 U/mL was used in the study. No adhesive was used in the control group and grafts were stabilized with staples. No topical dressings were applied to any of the treatment sites. Animals were sacrificed 4 weeks after graft application. Based on statistical analysis, thickness of adhesive application had a significant effect on skin graft survival. Percent mean graft survival in the control and thin application groups was found to be 92% and 97.8% respectively; the mean survival rate in the thick application group was 63.1%. Fibrinogen concentration, when evaluated independently within the thin and thick application groups, was found to have no significant effect on graft survival. Independent of fibrinogen concentration, a thin layer of fibrin tissue adhesive, when applied between two opposing surfaces, does not interfere with and may support the healing process, whereas a thick layer of adhesive inhibits skin graft healing.

The powdery mildew resistance gene REN1 co-segregates with an NBS-LRR gene cluster in two Central Asian grapevines

PubMed Central

2009-01-01

Background Grape powdery mildew is caused by the North American native pathogen Erysiphe necator. Eurasian Vitis vinifera varieties were all believed to be susceptible. REN1 is the first resistance gene naturally found in cultivated plants of Vitis vinifera. Results REN1 is present in 'Kishmish vatkana' and 'Dzhandzhal kara', two grapevines documented in Central Asia since the 1920's. These cultivars have a second-degree relationship (half sibs, grandparent-grandchild, or avuncular), and share by descent the chromosome on which the resistance allele REN1 is located. The REN1 interval was restricted to 1.4 cM using 38 SSR markers distributed across the locus and the segregation of the resistance phenotype in two progenies of collectively 461 offspring, derived from either resistant parent. The boundary markers delimit a 1.4-Mbp sequence in the PN40024 reference genome, which contains 27 genes with known functions, 2 full-length coiled-coil NBS-LRR genes, and 9 NBS-LRR pseudogenes. In the REN1 locus of PN40024, NBS genes have proliferated through a mixture of segmental duplications, tandem gene duplications, and intragenic recombination between paralogues, indicating that the REN1 locus has been inherently prone to producing genetic variation. Three SSR markers co-segregate with REN1, the outer ones confining the 908-kb array of NBS-LRR genes. Kinship and clustering analyses based on genetic distances with susceptible cultivars representative of Central Asian Vitis vinifera indicated that 'Kishmish vatkana' and 'Dzhandzhal kara' fit well into local germplasm. 'Kishmish vatkana' also has a parent-offspring relationship with the seedless table grape 'Sultanina'. In addition, the distant genetic relatedness to rootstocks, some of which are derived from North American species resistant to powdery mildew and have been used worldwide to guard against phylloxera since the late 1800's, argues against REN1 being infused into Vitis vinifera from a recent interspecific hybridisation. Conclusion The REN1 gene resides in an NBS-LRR gene cluster tightly delimited by two flanking SSR markers, which can assist in the selection of this DNA block in breeding between Vitis vinifera cultivars. The REN1 locus has multiple layers of structural complexity compared with its two closely related paralogous NBS clusters, which are located some 5 Mbp upstream and 4 Mbp downstream of the REN1 interval on the same chromosome. PMID:20042081

VizieR Online Data Catalog: LMC and Cen A 1.3-10GHz polarization behavior (Anderson+, 2016)

NASA Astrophysics Data System (ADS)

Anderson, C. S.; Gaensler, B. M.; Feain, I. J.

2016-08-01

The targets for our study were selected from among two archival polarization data sets, which were observed and processed by several independent groups. i.e. LMC observations spanning from 1994 Oct to 1996 Jan in 1.328-1.432GHz band; Cen A observations spanning from 2006 Dec to 2008 Feb in 1.296-1.480GHz band. We observed the 40 sample sources using the Australia Telescope Compact Array (ATCA) over 1.1-3.1GHz (16cm), 4.5-6.5GHz (6cm), and 8.0-10.0GHz (3cm) in full polarization with a nominal 1MHz channel resolution between 2012 Feb 10-12 and 2012 Aug 17-19. We imaged each source in Stokes I, Q, and U at 20MHz intervals through the 16 and 6cm bands, and at a substantially coarser resolution of 200MHz in the 3cm band. See sections 2 and 3 for further explanations. (2 data files).

Comparison of visible and near-infrared reflectance spectra of CM2 carbonaceous chondrites and primitive asteroids

NASA Technical Reports Server (NTRS)

Vilas, F.; Hiroi, T.; Zolensky, M. E.

1993-01-01

Spectra of primitive asteroids (defined as C, P, and D classes and associated subclasses) were compared to the limited number of spectra of CM2 carbonaceous chondrites. An absorption feature located at 0.7 microns attributed to an Fe(+2) - Fe(+3) charge transfer absorption in iron oxides in phyllosilicates is apparent in some of the CM2 carbonaceous chondrite spectra and many of the asteroid spectra. Sawyer found a correlation between the area of the 0.7 micron feature and the mean semimajor axis of the asteroids. Spectra of a larger sample of carbonaceous chondrites, including 7 CM2 chondrites, covering a spectral interval of 0.30-2.5 microns were recently obtained using the Relab instrument at Brown University. These spectra were compared with spectrophotometric asteroid observations in a separate abstract. Those spectra of CM2 chondrites were isolated into the UV, visible and near-infrared spectral regions in order to compare them with high-quality narrowband reflectance spectra.

A parametric study of the copper chloride laser

NASA Technical Reports Server (NTRS)

Nerheim, N. M.

1977-01-01

A parametric study of the double-pulsed copper chloride laser is reported. The effects of a wide range of variables on the laser energy density and on three characteristic time intervals (the minimum, maximum, and optimum delay time) between the two electrical-discharge pulses were studied. The geometric variables investigated included a tube diameter of 2.3 to 40 mm and a tube length of 3 to 60 cm. Three buffer gases, helium, neon, and argon, were studied over the pressure range 0.5-50 torr, and the tube temperature was varied from 270 to 500 C. The energy density and voltage of both the dissociation and pumping pulse were varied independently from less than 1 mJ/cu cm at 8.5 kV to over 500 mJ/cu cm at 20 kV. The optimum conditions for maximum laser energy density were found to be with 20 torr neon in a 10-mm by 30-cm tube at 400 C. The maximum energy density obtained was 22 microjoules/cu cm.

Strength and hypertrophy responses to constant and decreasing rest intervals in trained men using creatine supplementation.

PubMed

Souza-Junior, Tácito P; Willardson, Jeffrey M; Bloomer, Richard; Leite, Richard D; Fleck, Steven J; Oliveira, Paulo R; Simão, Roberto

2011-10-27

The purpose of the current study was to compare strength and hypertrophy responses to resistance training programs that instituted constant rest intervals (CI) and decreasing rest intervals (DI) between sets over the course of eight weeks by trained men who supplemented with creatine monohydrate (CR). Twenty-two recreationally trained men were randomly assigned to a CI group (n = 11; 22.3 ± 1 years; 77.7 ± 5.4 kg; 180 ± 2.2 cm) or a DI group (n = 11; 22 ± 2.5 years; 75.8 ± 4.9 kg; 178.8 ± 3.4 cm). Subjects in both groups supplemented with CR; the only difference between groups was the rest interval instituted between sets; the CI group used 2 minutes rest intervals between sets and exercises for the entire 8-weeks of training, while the DI group started with a 2 minute rest interval the first two weeks; after which the rest interval between sets was decreased 15 seconds per week (i.e. 2 minutes decreasing to 30 seconds between sets). Pre- and post-intervention maximal strength for the free weight back squat and bench press exercises and isokinetic peak torque were assessed for the knee extensors and flexors. Additionally, muscle cross-sectional area (CSA) of the right thigh and upper arm was measured using magnetic resonance imaging. Both groups demonstrated significant increases in back squat and bench press maximal strength, knee extensor and flexor isokinetic peak torque, and upper arm and right thigh CSA from pre- to post-training (p ≤ 0.0001); however, there were no significant differences between groups for any of these variables. The total volume for the bench press and back squat were significantly greater for CI group versus the DI group. We report that the combination of CR supplementation and resistance training can increase muscular strength, isokinetic peak torque, and muscle CSA, irrespective of the rest interval length between sets. Because the volume of training was greater for the CI group versus the DI group, yet strength gains were similar, the creatine supplementation appeared to bolster adaptations for the DI group, even in the presence of significantly less volume. However, further research is needed with the inclusion of a control group not receiving supplementation combined and resistance training with decreasing rest intervals to further elucidate such hypotheses.

Head scarp boundary for the landslides in the Little North Santiam River Basin, Oregon

USGS Publications Warehouse

Sobieszczyk, Steven

2010-01-01

Polygons represent head scarps and flank scarps associated with landslide deposits in the Little North Santiam River Basin, Oregon. This work was completed as part of the Master's thesis "Turbidity Monitoring and LiDAR Imagery Indicate Landslides are Primary Source of Suspended-Sediment Load in the Little North Santiam River Basin, Oregon, Winter 2009-2010" by Steven Sobieszczyk, Portland State University and U.S. Geological Survey. Data layers in this geodatabase include: landslide deposit boundaries (Deposits); field-verfied location imagery (Photos); head scarp or scarp flanks (Scarp_Flanks); and secondary scarp features (Scarps).The geodatabase template was developed by the Oregon Department of Geology and Mineral Industries (Burns and Madin, 2009).

Influence of speed on wear and cutting forces in end-milling nickel alloy

NASA Astrophysics Data System (ADS)

Estrems, M.; Sánchez, H. T.; Kurfess, T.; Bunget, C.

2012-04-01

The effect of speed on the flank wear of the cutting tool when a nickel alloy is milled is studied. From the analysis of the measured forces, a dynamic semi-experimental model is developed based on the parallelism between the curve of the thrust forces of the unworn tool and the curves when the flank of the tool is worn. Based on the change in the geometry of the contact in the flank worrn face, a theory of indentation of the tool on the workpiece is formulated in such a way that upon applying equations of contact mechanics, a good approximation of the experimental results is obtained.

Cerebral autosomal dominant arteriopathy with subcortical infarcts and leukoencephalopathy, genetic homogeneity, and mapping of the locus within a 2-cM interval

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ducros, A.; Alamowitch, S.; Nagy, T.

1996-01-01

Cerebral autosomal dominant arteriopathy with subcortical infarcts and leukoencephalopathy (CADASIL) is a recently identified autosomal dominant cerebral arteriopathy characterized by the recurrence of subcortical infarcts leading to dementia. A genetic linkage analysis conducted in two large families recently allowed us to map the affected gene on chromosome 19 in a 12-cM interval bracketed by D19S221 and D19S215. In the present study, these first 2 families and 13 additional ones, including a total of 199 potentially informative meiosis, have been genotyped with eight polymorphic markers located between D19S221 and D19S215. All families were linked to chromosome 19. The highest combined lodmore » score (Z{sub max} = 37.24 at {theta} = .01) was obtained with marker D19S841, a new CA{sub n} microsatellite marker that we isolated from chromosome 19 cosmids. The recombinant events observed within these families were used to refine the genetic mapping of CADASIL within a 2-cM interval that is now bracketed by D19S226 and D19S199 on 19p13.1. These data strongly suggest the genetic homogeneity of this recently identified condition and establish the value of its clinical and neuroimaging diagnostic criteria. Besides their importance for the ongoing positional cloning of the CADASIL gene, these data help to refine the genetic mapping of CADASIL relative to familial hemiplegic migraine and hereditary paroxysmal cerebellar ataxia, conditions that we both mapped within the same chromosome 19 region. 35 refs., 5 figs., 2 tabs.« less

Vegetation successfully prevents oxidization of sulfide minerals in mine tailings.

PubMed

Li, Yang; Sun, Qingye; Zhan, Jing; Yang, Yang; Wang, Dan

2016-07-15

The oxidization of metal sulfide in tailings causes acid mine drainage. However, it remains unclear whether vegetation prevents the oxidization of metal sulfides. The oxidization characteristics and microbial indices of the tailings in the presence of various plant species were investigated to explore the effects of vegetation on the oxidization of sulfide minerals in tailings. The pH, reducing sulfur, free iron oxides (Fed), chemical oxygen consumption (COC) and biological oxygen consumption (BOC) were measured. Key iron- and sulfur-oxidizing bacteria (Acidithiobacillus spp., Leptospirillum spp. and Thiobacillus spp.) were quantified using real-time PCR. The results indicate that vegetation growing on tailings can effectively prevent the oxidization of sulfide minerals in tailings. A higher pH and reducing-sulfur content and lower Fed were observed in the 0-30 cm depth interval in the presence of vegetation compared to bare tailings (BT). The COC gradually decreased with depth in all of the soil profiles; specifically, the COC rapidly decreased in the 10-20 cm interval in the presence of vegetation but gradually decreased in the BT profiles. Imperata cylindrica (IC) and Chrysopogon zizanoides (CZ) profiles contained the highest BOC in the 10-20 cm interval. The abundance of key iron- and sulfur-oxidizing bacteria in the vegetated tailings were significantly lower than in the BT; in particular, IC was associated with the lowest iron- and sulfur-oxidizing bacterial abundance. In conclusion, vegetation successfully prevented the oxidization of sulfide minerals in the tailings, and Imperata cylindrica is the most effective in reducing the number of iron- and sulfur-oxidizing bacteria and helped to prevent the oxidization of sulfide minerals in the long term. Copyright © 2016 Elsevier Ltd. All rights reserved.

Impact of mandibular invasion on prognosis in oral squamous cell carcinoma four centimeters or less in size.

PubMed

Fives, Cassie; Nae, Andreea; Roche, Phoebe; O'Leary, Gerard; Fitzgerald, Brendan; Feeley, Linda; Sheahan, Patrick

2017-04-01

Previous studies have reported variable results for the impact of bone invasion on survival in oral cancer. It is unclear whether bone invasion in small (≤4 cm) squamous cell carcinomas (SCC) of the oral cavity is an independent adverse prognosticator. Our objective was to investigate impact on survival of bone invasion in SCC of floor of mouth (FOM), lower alveolus (LA), and retromolar trigone (RMT) ≤4 cm in size. Retrospective study of 96 patients with SCC of the FOM, LA, and RMT undergoing primary surgical treatment. Original pathology reports and slides were reviewed by three pathologists. Level of bone invasion was categorized as cortical or medullary. Main outcome measures were local control (LC) and overall survival (OS). Bone invasion was present in 31 cases (32%). On review of pathology slides, all cases of bone invasion demonstrated medullary involvement. Median follow-up was 36 months for all patients, and 53 months for patients not dying from cancer. Among tumors ≤4 cm, bone invasion was associated with significantly worse LC (P =.04) and OS (P =.0005). Medullary invasion (hazard ratio: 2.2, 95% confidence interval: 1.1-4.4, P =.03), postoperative radiotherapy (hazard ratio: 0.3, 95% confidence interval: 0.1-0.5, P <.001), and positive pathologic nodal status (hazard ratio: 4.1, 95% confidence interval: 1.9-8.6, P <.001) were independent predictors of worse OS among the entire cohort. Mandibular medullary bone invasion is a poor prognosticator in oral cancers, irrespective of small size of primary tumor. Such cases should be considered for postoperative radiotherapy. 4. Laryngoscope, 127:849-854, 2017. © 2016 The American Laryngological, Rhinological and Otological Society, Inc.

Evaluation of cinnamon essential oil microemulsion and its vapor phase for controlling postharvest gray mold of pears (Pyrus pyrifolia).

PubMed

Wang, Yifei; Zhao, Ruipeng; Yu, Ling; Zhang, Yunbin; He, Yan; Yao, Jie

2014-03-30

Essential oil of cinnamon (CM) is a potential alternative to chemical fungicides. Thus this work aimed to investigate the possible effects of CM microemulsions on decay developments and qualitative properties of pears. The decay incidence of samples treated with 500 µg L⁻¹ microemulsion was significantly reduced by 18.7% in comparison to that of 500 µg L⁻¹ non-microemulsion after 4 days' storage at 20 °C. In the vapor phase, the CM microemulsion with the lowest concentration had the best control for decay incidence and lesion diameter. The interval between inoculations also influenced decay development. Pears treated with Botrytis cinerea and immediately followed by CM microemulsion showed the lowest decay incidence. Moreover, in the natural decay experiment, the percentage of rotted pears was 3.8% in the CM microemulsion treatment and 5.8% in the control. CM microemulsion delayed the loss of ascorbic acid, yet it had no significant influence on pear qualities such as firmness and color. CM microemulsion may be an alternative way to control the gray mold of pears without a negative influence on its qualities. © 2013 Society of Chemical Industry.

Impact of Martial Arts (Judo, Karate, and Kung Fu) on Bone Mineral Density Gains in Adolescents of Both Genders: 9-Month Follow-Up.

PubMed

Ito, Igor H; Kemper, Han C G; Agostinete, Ricardo R; Lynch, Kyle R; Christofaro, Diego G D; Ronque, Enio R; Fernandes, Rômulo A

2017-11-01

To compare bone mineral density (BMD) gains in adolescents of both genders stratified according to different martial art styles in a 9-month follow-up study. The longitudinal study consisted of 29 adolescents of both genders and age between 11 and 17 years stratified into a control group (not engaged in any sport) and 50 fighters (kung fu/karate, n = 29; judo, n = 21). All 79 subjects underwent anthropometric measures (weight, height, leg length, and height set) and dual-energy X-ray absorptiometry (BMD, in g/cm 2 ) at 2 moments, baseline and 9 months later. Maturity offset (age at peak height velocity), lean soft tissue, chronological age, and resistance training were treated as covariates. Male judoists presented higher gains in BMD-spine [0.098 g/cm 2 (95% confidence interval, 0.068-0.128)] than control group [0.040 g/cm 2 (95% confidence interval, 0.011-0.069)] (post hoc test with P = .030). There was no effect of martial art on BMD gains among girls. Independently of gender, in all multivariate models, lean soft tissue constituted the most relevant covariate. Judo practice in adolescents affected the bone accrual significantly after 9-month follow-up compared with controls, mainly in boys.

Archaeological Excavations at 32BA415, 32BA428, and 32GG5 on Lake Ashtabula Barnes and Griggs Counties, North Dakota,

DTIC Science & Technology

1984-07-01

present, local surface drainage tends to be poorly developed (Klausing 1968; Scoby , et. al. 1973); this is due in large part to the low permeability of...extremes. During a ten year interval, 1951-1960, re- corded temperatures varied from -38.30 C to 39.40 C ( Scoby , et. al. 1973). Rainfall ranges from...September (Omodt, et. al. 1966). S Heaviest snowfall occurs during December and January with annual totals ranging between 60.7 cm and 72.1 cm ( Scoby , et. al

Infrared and Raman spectroscopy and DFT calculations of DL amino acids: Valine and lysine hydrochloride

NASA Astrophysics Data System (ADS)

Paiva, F. M.; Batista, J. C.; Rêgo, F. S. C.; Lima, J. A.; Freire, P. T. C.; Melo, F. E. A.; Mendes Filho, J.; de Menezes, A. S.; Nogueira, C. E. S.

2017-01-01

Single crystals of DL-valine and DL-lysine hydrochloride were grown by slow evaporation method and the crystallographic structure were confirmed by X-ray diffraction experiment and Rietveld method. These two crystals have been studied by Raman spectroscopy in the 25-3600 cm-1 spectral range and by infrared spectroscopy through the interval 375-4000 cm-1 at room temperature. Experimental and theoretical vibrational spectra were compared and a complete analysis of the modes was done in terms of the Potential Energy Distribution (PED).

A Study of Mid-Latitude 5577A CI Dayglow Emissions

DTIC Science & Technology

1992-01-01

The subroutine returns the longwave and shortwave boundaries, WAVE1 and WAVE2 , of the wavelength bins (A), and the solar flux in each bin SFLUX...average 10.7 cm flux (’) C FLYA H Lyman-alpha flux (photons cm-2 s-i) C WAVE 1 longwave bound of spectral intervals (Angstroms) C WAVE2 shortwave bound...currently = 59 C WAVEL = WAVE1 C WAVES = WAVE2 C RFLUX low solar activity reference flux C XFLUX high solar activity flux C SCALE1 scaling factors for H LyB

Soil water stable isotopes reveal evaporation dynamics at the soil-plant-atmosphere interface of the critical zone

NASA Astrophysics Data System (ADS)

Sprenger, Matthias; Tetzlaff, Doerthe; Soulsby, Chris

2017-07-01

Understanding the influence of vegetation on water storage and flux in the upper soil is crucial in assessing the consequences of climate and land use change. We sampled the upper 20 cm of podzolic soils at 5 cm intervals in four sites differing in their vegetation (Scots Pine (Pinus sylvestris) and heather (Calluna sp. and Erica Sp)) and aspect. The sites were located within the Bruntland Burn long-term experimental catchment in the Scottish Highlands, a low energy, wet environment. Sampling took place on 11 occasions between September 2015 and September 2016 to capture seasonal variability in isotope dynamics. The pore waters of soil samples were analyzed for their isotopic composition (δ2H and δ18O) with the direct-equilibration method. Our results show that the soil waters in the top soil are, despite the low potential evaporation rates in such northern latitudes, kinetically fractionated compared to the precipitation input throughout the year. This fractionation signal decreases within the upper 15 cm resulting in the top 5 cm being isotopically differentiated to the soil at 15-20 cm soil depth. There are significant differences in the fractionation signal between soils beneath heather and soils beneath Scots pine, with the latter being more pronounced. But again, this difference diminishes within the upper 15 cm of soil. The enrichment in heavy isotopes in the topsoil follows a seasonal hysteresis pattern, indicating a lag time between the fractionation signal in the soil and the increase/decrease of soil evaporation in spring/autumn. Based on the kinetic enrichment of the soil water isotopes, we estimated the soil evaporation losses to be about 5 and 10 % of the infiltrating water for soils beneath heather and Scots pine, respectively. The high sampling frequency in time (monthly) and depth (5 cm intervals) revealed high temporal and spatial variability of the isotopic composition of soil waters, which can be critical, when using stable isotopes as tracers to assess plant water uptake patterns within the critical zone or applying them to calibrate tracer-aided hydrological models either at the plot to the catchment scale.

Global mean sea-level rise in a world agreed upon in Paris

NASA Astrophysics Data System (ADS)

Bittermann, Klaus; Rahmstorf, Stefan; Kopp, Robert E.; Kemp, Andrew C.

2017-12-01

Although the 2015 Paris Agreement seeks to hold global average temperature to ‘well below 2 °C above pre-industrial levels and to pursue efforts to limit the temperature increase to 1.5 °C above pre-industrial levels’, projections of global mean sea-level (GMSL) rise commonly focus on scenarios in which there is a high probability that warming exceeds 1.5 °C. Using a semi-empirical model, we project GMSL changes between now and 2150 CE under a suite of temperature scenarios that satisfy the Paris Agreement temperature targets. The projected magnitude and rate of GMSL rise varies among these low emissions scenarios. Stabilizing temperature at 1.5 °C instead of 2 °C above preindustrial reduces GMSL in 2150 CE by 17 cm (90% credible interval: 14-21 cm) and reduces peak rates of rise by 1.9 mm yr-1 (90% credible interval: 1.4-2.6 mm yr-1). Delaying the year of peak temperature has little long-term influence on GMSL, but does reduce the maximum rate of rise. Stabilizing at 2 °C in 2080 CE rather than 2030 CE reduces the peak rate by 2.7 mm yr-1 (90% credible interval: 2.0-4.0 mm yr-1).

West Flank Coso Downhole Temperature Data

DOE Data Explorer

Doug Blankenship

2008-03-01

Downhole temperature data for the three wells inside the West Flank FORGE footprint; 83-11, TCH 74-2 and TCH 48-11. TCH 74-2 and TCH 48-11 were both collected before 1990 and 83-11 was collected in 2009. The are compiled into one spreadsheet for ease of visualization. Plot of data included.

Erratum: Correction to: Emplacement controls for the basaltic-andesitic radial dikes of Summer Coon volcano and implications for flank vents at stratovolcanoes

NASA Astrophysics Data System (ADS)

Harp, A. G.; Valentine, G. A.

2018-06-01

In the article "Emplacement controls for the basaltic-andesitic radial dikes of Summer Coon volcano and implications for flank vents at stratovolcanoes", the vertical axis for Fig. 8 a was incorrectly labeled (i.e., the value for dikes per km2).

Window type: paired 2x4 multipaned steel windows flanked by 1x4 ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

Window type: paired 2x4 multipaned steel windows flanked by 1x4 multipaned steel casements, breaking building corner. Raised panel door front entry also illustrated. Ground floor detail Building 19, facing north - Harbor Hills Housing Project, 26607 Western Avenue, Lomita, Los Angeles County, CA

Microbial Life in Ridge Flank Crustal Fluids at Baby Bare Seamount, Juan de Fuca Ridge

NASA Astrophysics Data System (ADS)

Huber, J. A.; Johnson, H. P.; Butterfield, D. A.; Baross, J. A.

2005-12-01

To determine the microbial community diversity within old oceanic crust, a novel sampling strategy was used to collect crustal fluids at Baby Bare Seamount, a 3.5 Ma old outcrop located in the northeast Pacific Ocean on the eastern flank of the Juan de Fuca Ridge. Stainless steel probes were driven directly into the igneous ocean crust to obtain samples of ridge flank crustal fluids. Genetic signatures and enrichment cultures of microorganisms demonstrate that these crustal fluids host a microbial community composed of species indigenous to the subseafloor, including anaerobic thermophiles, and species from other deep-sea habitats, such as seawater and sediments. Evidence using molecular techniques indicates the presence of a relatively small but active microbial population, dominated by bacteria. The microbial community diversity found in the crustal fluids may indicate habitat variability in old oceanic crust, with inputs of nutrients from seawater, sediment pore-water fluids and possibly hydrothermal sources. This report further supports the presence of an indigenous microbial community in ridge flank crustal fluids and advances our understanding of the potential physiological and phylogenetic diversity of this community.

Ups and downs on spreading flanks of ocean-island volcanoes: evidence from Mauna Loa and Kīlauea

USGS Publications Warehouse

Lipman, Peter W.; Eakins, Barry W.; Yokose, Hisayoshi

2003-01-01

Submarine-flank deposits of Hawaiian volcanoes are widely recognized to have formed largely by gravitationally driven volcano spreading and associated landsliding. Observations from submersibles show that prominent benches at middepths on flanks of Mauna Loa and Kilauea consist of volcaniclastic debris derived by landsliding from nearby shallow submarine and subaerial flanks of the same edifice. Massive slide breccias from the mature subaerial tholeiitic shield of Mauna Loa underlie the frontal scarp of its South Kona bench. In contrast, coarse volcaniclastic sediments derived largely from submarine-erupted preshield alkalic and transitional basalts of ancestral Kilauea underlie its Hilina bench. Both midslope benches record the same general processes of slope failure, followed by modest compression during continued volcano spreading, even though they record development during different stages of edifice growth. The dive results suggest that volcaniclastic rocks at the north end of the Kona bench, interpreted by others as distal sediments from older volcanoes that were offscraped, uplifted, and accreted to the island by far-traveled thrusts, alternatively are a largely coherent stratigraphic assemblage deposited in a basin behind the South Kona bench.

Plasma Sheet Circulation Pathways

NASA Technical Reports Server (NTRS)

Moore, Thomas E.; Delcourt, D. C.; Slinker, S. P.; Fedder, J. A.; Damiano, P.; Lotko, W.

2008-01-01

Global simulations of Earth's magnetosphere in the solar wind compute the pathways of plasma circulation through the plasma sheet. We address the pathways that supply and drain the plasma sheet, by coupling single fluid simulations with Global Ion Kinetic simulations of the outer magnetosphere and the Comprehensive Ring Current Model of the inner magnetosphere, including plasmaspheric plasmas. We find that the plasma sheet is supplied with solar wind plasmas via the magnetospheric flanks, and that this supply is most effective for northward IMF. For southward IMF, the innermost plasma sheet and ring current region are directly supplied from the flanks, with an asymmetry of single particle entry favoring the dawn flank. The central plasma sheet (near midnight) is supplied, as expected, from the lobes and polar cusps, but the near-Earth supply consists mainly of slowly moving ionospheric outflows for typical conditions. Work with the recently developed multi-fluid LFM simulation shows transport via plasma "fingers" extending Earthward from the flanks, suggestive of an interchange instability. We investigate this with solar wind ion trajectories, seeking to understand the fingering mechanisms and effects on transport rates.

Gravitropism of basidiomycetous fungi — On Earth and in microgravity

NASA Astrophysics Data System (ADS)

Kern, V. D.

1999-01-01

In order to achieve perfect positioning of their lamellae for spore dispersal, fruiting bodies of higher fungi rely on the omnipresent force gravity. Only accurate negatively gravitropic orientation of the fruiting body cap will guarantee successful reproduction. A spaceflight experiment during the STS-55 Spacelab mission in 1993 confirmed that the factor gravity is employed for spatial orientation. Most likely every hypha in the transition zone between the stipe and the cap region is capable of sensing gravity. Sensing presumably involves slight sedimentation of nuclei which subsequently causes deformation of the net-like arrangement of F-actin filament strands. Hyphal elongation is probably driven by hormone-controlled activation and redistribution of vesicle traffic and vesicle incorporation into the vacuoles and cell walls to subsequently cause increased water uptake and turgor pressure. Stipe bending is achieved by way of differential growth of the flanks of the upper-most stipe region. After reorientation to a horizontal position, elongation of the upper flank hyphae decreases 40% while elongation of the lower flank slightly increases. On the cellular level gravity-stimulated vesicle accumulation was observed in hyphae of the lower flank.

Control of the structural landscape and neuronal proteotoxicity of mutant Huntingtin by domains flanking the polyQ tract

PubMed Central

Shen, Koning; Calamini, Barbara; Fauerbach, Jonathan A; Ma, Boxue; Shahmoradian, Sarah H; Serrano Lachapel, Ivana L; Chiu, Wah; Lo, Donald C; Frydman, Judith

2016-01-01

Many neurodegenerative diseases are linked to amyloid aggregation. In Huntington’s disease (HD), neurotoxicity correlates with an increased aggregation propensity of a polyglutamine (polyQ) expansion in exon 1 of mutant huntingtin protein (mHtt). Here we establish how the domains flanking the polyQ tract shape the mHtt conformational landscape in vitro and in neurons. In vitro, the flanking domains have opposing effects on the conformation and stabilities of oligomers and amyloid fibrils. The N-terminal N17 promotes amyloid fibril formation, while the C-terminal Proline Rich Domain destabilizes fibrils and enhances oligomer formation. However, in neurons both domains act synergistically to engage protective chaperone and degradation pathways promoting mHtt proteostasis. Surprisingly, when proteotoxicity was assessed in rat corticostriatal brain slices, either flanking region alone sufficed to generate a neurotoxic conformation, while the polyQ tract alone exhibited minimal toxicity. Linking mHtt structural properties to its neuronal proteostasis should inform new strategies for neuroprotection in polyQ-expansion diseases. DOI: http://dx.doi.org/10.7554/eLife.18065.001 PMID:27751235

Length and sequence dependence in the association of Huntingtin protein with lipid membranes

NASA Astrophysics Data System (ADS)

Jawahery, Sudi; Nagarajan, Anu; Matysiak, Silvina

2013-03-01

There is a fundamental gap in our understanding of how aggregates of mutant Huntingtin protein (htt) with overextended polyglutamine (polyQ) sequences gain the toxic properties that cause Huntington's disease (HD). Experimental studies have shown that the most important step associated with toxicity is the binding of mutant htt aggregates to lipid membranes. Studies have also shown that flanking amino acid sequences around the polyQ sequence directly affect interactions with the lipid bilayer, and that polyQ sequences of greater than 35 glutamine repeats in htt are a characteristic of HD. The key steps that determine how flanking sequences and polyQ length affect the structure of lipid bilayers remain unknown. In this study, we use atomistic molecular dynamics simulations to study the interactions between lipid membranes of varying compositions and polyQ peptides of varying lengths and flanking sequences. We find that overextended polyQ interactions do cause deformation in model membranes, and that the flanking sequences do play a role in intensifying this deformation by altering the shape of the affected regions.

Analysis of atmospheric trace constituents from high resolution infrared balloon-borne and ground-based solar absorption spectra

NASA Technical Reports Server (NTRS)

Goldman, A.; Murcray, F. J.; Rinsland, C. P.; Blatherwick, R. D.; Murcray, F. H.; Murcray, D. G.

1991-01-01

Results of ongoing studies of high-resolution solar absorption spectra aimed at the identification and quantification of trace constituents of importance in the chemistry of the stratosphere and upper troposphere are presented. An analysis of balloon-borne and ground-based spectra obtained at 0.0025/cm covering the 700-2200/cm interval is presented. The 0.0025/cm spectra, along with corresponding laboratory spectra, improves the spectral line parameters, and thus the accuracy of quantifying trace constituents. Results for COF2, F22, SF6, and other species are presented. The retrieval methods used for total column density and altitude distribution for both ground-based and balloon-borne spectra are also discussed.

The hard X-ray burst spectrometer on the solar maximum mission

NASA Technical Reports Server (NTRS)

Orwig, L. E.; Frost, K. J.; Dennis, B. R.

1979-01-01

The primary scientific objective of the spectrometer is to provide a greater understanding of the role of energetic electrons in solar flares. This will be achieved by observations of high energy X-rays in the energy range from 20 to 200 keV with time resolution of 0.128s on a continuous basis and as short as 1 ms for limited intervals. The X-ray detector is an actively shielded CsI(Na) crystal with a thickness of 0.635 cm and a sensitive area of 71 sq cm. In the first year after launch, it is expected that approximately 1000 flares above the sensitivity threshold of 0.2 photons/(sq cm s) lasting for one second, will be detected.

Mapping genes for resistance to stripe rust in spring wheat landrace PI 480035

PubMed Central

Krishnan, Vandhana; Jiwan, Derick; Chen, Xianming; Skinner, Daniel Z.; See, Deven R.

2017-01-01

Stripe rust caused by Puccinia striiformis Westend. f. sp. tritici Erikks. is an economically important disease of wheat (Triticum aestivum L.). Hexaploid spring wheat landrace PI 480035 was highly resistant to stripe rust in the field in Washington during 2011 and 2012. The objective of this research was to identify quantitative trait loci (QTL) for stripe rust resistance in PI 480035. A spring wheat, “Avocet Susceptible” (AvS), was crossed with PI 480035 to develop a biparental population of 110 recombinant inbred lines (RIL). The population was evaluated in the field in 2013 and 2014 and seedling reactions were examined against three races (PSTv-14, PSTv-37, and PSTv-40) of the pathogen under controlled conditions. The population was genotyped with genotyping-by-sequencing and microsatellite markers across the whole wheat genome. A major QTL, QYr.wrsggl1-1BS was identified on chromosome 1B. The closest flanking markers were Xgwm273, Xgwm11, and Xbarc187 1.01 cM distal to QYr.wrsggl1-1BS, Xcfd59 0.59 cM proximal and XA365 3.19 cM proximal to QYr.wrsggl1-1BS. Another QTL, QYr.wrsggl1-3B, was identified on 3B, which was significant only for PSTv-40 and was not significant in the field, indicating it confers a race-specific resistance. Comparison with markers associated with previously reported Yr genes on 1B (Yr64, Yr65, and YrH52) indicated that QYr.wrsggl1-1BS is potentially a novel stripe rust resistance gene that can be incorporated into modern breeding materials, along with other all-stage and adult-plant resistance genes to develop cultivars that can provide durable resistance. PMID:28542451

CmPEX6, a Gene Involved in Peroxisome Biogenesis, Is Essential for Parasitism and Conidiation by the Sclerotial Parasite Coniothyrium minitans

PubMed Central

Wei, Wei; Zhu, Wenjun; Cheng, Jiasen; Xie, Jiatao; Li, Bo; Jiang, Daohong; Li, Guoqing; Yi, Xianhong

2013-01-01

Coniothyrium minitans is a sclerotial parasite of the plant-pathogenic fungus Sclerotinia sclerotiorum, and conidial production and parasitism are two important aspects for commercialization of this biological control agent. To understand the mechanism of conidiation and parasitism at the molecular level, we constructed a transfer DNA (tDNA) insertional library with the wild-type strain ZS-1. A conidiation-deficient mutant, ZS-1TN22803, was uncovered through screening of this library. This mutant could produce pycnidia on potato dextrose agar (PDA), but most were immature and did not bear conidia. Moreover, this mutant lost the ability to parasitize or rot the sclerotia of S. sclerotiorum. Analysis of the tDNA flanking sequences revealed that a peroxisome biogenesis factor 6 (PEX6) homolog of Saccharomyces cerevisiae, named CmPEX6, was disrupted by the tDNA insertion in this mutant. Targeted gene replacement and gene complementation tests confirmed that a null mutation of CmPEX6 was responsible for the phenotype of ZS-1TN22803. Further analysis showed that both ZS-1TN22803 and the targeted replacement mutants could not grow on PDA medium containing oleic acid, and they produced much less nitric oxide (NO) and hydrogen peroxide (H2O2) than wild-type strain ZS-1. The conidiation of ZS-1TN22803 was partially restored by adding acetyl-CoA or glyoxylic acid to the growth media. Our results suggest that fatty acid β-oxidation, reactive oxygen and nitrogen species, and possibly other unknown pathways in peroxisomes are involved in conidiation and parasitism by C. minitans. PMID:23563946

Secondary relaxation dynamics in rigid glass-forming molecular liquids with related structures.

PubMed

Li, Xiangqian; Wang, Meng; Liu, Riping; Ngai, Kia L; Tian, Yongjun; Wang, Li-Min; Capaccioli, Simone

2015-09-14

The dielectric relaxation in three glass-forming molecular liquids, 1-methylindole (1MID), 5H-5-Methyl-6,7-dihydrocyclopentapyrazine (MDCP), and Quinaldine (QN) is studied focusing on the secondary relaxation and its relation to the structural α-relaxation. All three glass-formers are rigid and more or less planar molecules with related chemical structures but have dipoles of different strengths at different locations. A strong and fast secondary relaxation is detected in the dielectric spectra of 1MID, while no resolved β-relaxation is observed in MDCP and QN. If the observed secondary relaxation in 1MID is identified with the Johari-Goldstein (JG) β-relaxation, then apparently the relation between the α- and β-relaxation frequencies of 1MID is not in accord with the Coupling Model (CM). The possibility of the violation of the prediction in 1MID as due to either the formation of hydrogen-bond induced clusters or the involvement of intramolecular degree of freedom is ruled out. The violation is explained by the secondary relaxation originating from the in-plane rotation of the dipole located on the plane of the rigid molecule, contributing to dielectric loss at higher frequencies and more intense than the JG β-relaxation generated by the out-of-plane rotation. MDCP has smaller dipole moment located in the plane of the molecule; however, presence of the change of curvature of dielectric loss, ε″(f), at some frequency on the high-frequency flank of the α-relaxation reveals the JG β-relaxation in MDCP and which is in accord with the CM prediction. QN has as large an in-plane dipole moment as 1MID, and the absence of the resolved secondary relaxation is explained by the smaller coupling parameter than the latter in the framework of the CM.

Evidence for human meiotic recombination interference obtained through construction of a short tandem repeat-polymorphism linkage map of chromosome 19

PubMed Central

Weber, James L.; Wang, Zhenyuan; Hansen, Kevin; Stephenson, Matt; Kappel, Clarisse; Salzman, Sherry; Wilkie, Patricia J.; Keats, Bronya; Dracopoli, Nicholas C.; Brandriff, Brigitte F.; Olsen, Anne S.

1993-01-01

An improved linkage map for human chromosome 19 containing 35 short tandem repeat polymorphisms (STRPs) and one VNTR (D19S20) was constructed. The map included 12 new (GATA)n tetranucleotide STRPs. Although total lengths of the male (114 cM) and female (128 cM) maps were similar, at both ends of the chromosome male recombination exceeded female recombination, while in the interior portion of the map female recombination was in excess. Cosmid clones containing the STRP sequences were identified and were positioned along the chromosome by fluorescent in situ hybridization. Four rounds of careful checking and removal of genotyping errors allowed biologically relevant conclusions to be made concerning the numbers and distributions of recombination events on chromosome 19. The average numbers of recombinations per chromosome matched closely the lengths of the genetic maps computed by using the program CRIMAP. Significant numbers of chromosomes with zero, one, two, or three recombinations were detected as products of both female and male meioses. On the basis of the total number of observed pairs of recombination events in which only a single informative marker was situated between the two recombinations, a maximal estimate for the rate of meiotic STRP “gene” conversion without recombination was calculated as 3 × 10−4/meiosis. For distances up to 30 cM between recombinations, many fewer chromosomes which had undergone exactly two recombinations were observed than were expected on the basis of the assumption of independent recombination locations. This strong new evidence for human meiotic interference will help to improve the accuracy of interpretation of clinical DNA test results involving polymorphisms flanking a genetic abnormality. PMID:8213834

Characterization and mapping of complementary lesion-mimic genes lm1 and lm2 in common wheat.

PubMed

Yao, Qin; Zhou, Ronghua; Fu, Tihua; Wu, Weiren; Zhu, Zhendong; Li, Aili; Jia, Jizeng

2009-10-01

A lesion-mimic phenotype appeared in a segregating population of common wheat cross Yanzhan 1/Zaosui 30. The parents had non-lesion normal phenotypes. Shading treatment and histochemical analyses showed that the lesions were caused by light-dependent cell death and were not associated with pathogens. Studies over two cropping seasons showed that some lines with more highly expressed lesion-mimic phenotypes exhibited significantly lower grain yields than those with the normal phenotype, but there were no significant effects in the lines with weakly expressed lesion-mimic phenotypes. Among yield traits, one-thousand grain weight was the most affected by lesion-mimic phenotypes. Genetic analysis indicated that this was a novel type of lesion mimic, which was caused by interaction of recessive genes derived from each parent. The lm1 (lesion mimic 1) locus from Zaosui 30 was flanked by microsatellite markers Xwmc674 and Xbarc133/Xbarc147 on chromosome 3BS, at genetic distances of 1.2 and 3.8 cM, respectively, whereas lm2 from Yanzhan 1 was mapped between microsatellite markers Xgwm513 and Xksum154 on chromosome 4BL, at genetic distances of 1.5 and 3 cM, respectively. The linked microsatellite makers identified in this study might be useful for evaluating whether potential parents with normal phenotype are carriers of lesion-mimic alleles.

Physical Mapping in a Triplicated Genome: Mapping the Downy Mildew Resistance Locus Pp523 in Brassica oleracea L.

PubMed Central

Carlier, Jorge D.; Alabaça, Claudia S.; Sousa, Nelson H.; Coelho, Paula S.; Monteiro, António A.; Paterson, Andrew H.; Leitão, José M.

2011-01-01

We describe the construction of a BAC contig and identification of a minimal tiling path that encompass the dominant and monogenically inherited downy mildew resistance locus Pp523 of Brassica oleracea L. The selection of BAC clones for construction of the physical map was carried out by screening gridded BAC libraries with DNA overgo probes derived from both genetically mapped DNA markers flanking the locus of interest and BAC-end sequences that align to Arabidopsis thaliana sequences within the previously identified syntenic region. The selected BAC clones consistently mapped to three different genomic regions of B. oleracea. Although 83 BAC clones were accurately mapped within a ∼4.6 cM region surrounding the downy mildew resistance locus Pp523, a subset of 33 BAC clones mapped to another region on chromosome C8 that was ∼60 cM away from the resistance gene, and a subset of 63 BAC clones mapped to chromosome C5. These results reflect the triplication of the Brassica genomes since their divergence from a common ancestor shared with A. thaliana, and they are consonant with recent analyses of the C genome of Brassica napus. The assembly of a minimal tiling path constituted by 13 (BoT01) BAC clones that span the Pp523 locus sets the stage for map-based cloning of this resistance gene. PMID:22384370

Flexural analysis of uplifted rift flanks on Venus

NASA Technical Reports Server (NTRS)

Evans, Susan A.; Simons, Mark; Solomon, Sean C.

1992-01-01

Knowledge of the thermal structure of a planet is vital to a thorough understanding of its general scheme of tectonics. Since no direct measurements of heat flow or thermal gradient are available for Venus, most estimates have been derived from theoretical considerations or by analog with the Earth. The flexural response of the lithosphere to applied loads is sensitive to regional thermal structure. Under the assumption that the yield strength as a function of depth can be specified, the temperature gradient can be inferred from the effective elastic plate thickness. Previous estimates of the effective elastic plate thickness of Venus range from 11-18 km for the foredeep north of Uorsar Rupes to 30-60 km for the annular troughs around several coronae. Thermal gradients inferred for these regions are 14-23 K km(exp -1) and 4-9 K km(exp -1) respectively. In this study, we apply the same techniques to investigate the uplifted flanks of an extensional rift. Hypotheses for the origin of uplifted rift flanks on Earth include lateral transport of heat from the center of the rift, vertical transport of heat by small-scale convection, differential thinning of the lithosphere, dynamical uplift, and isostatic response to mechanical uploading of the lithosphere. The 1st hypothesis is considered the dominant contributor to terrestrial rift flanks lacking evidence for volcanic activity, particularly for rift structures that are no longer active. In this study, we model the uplifted flanks of a venusian rift as the flexural response to a vertical end load.

Establishing Normative Reference Values for Standing Broad Jump Among Hungarian Youth.

PubMed

Saint-Maurice, Pedro F; Laurson, Kelly R; Kaj, Mónika; Csányi, Tamás

2015-06-26

The purpose of this study was to examine age and sex trends in anaerobic power assessed by a standing broad jump and to determine norm-referenced values for youth in Hungary. A sample of 2,427 Hungarian youth (1,360 boys and 1,067 girls) completed the standing broad jump twice, and the highest distance score was recorded. Quantile regression was used to fit standing broad jump trends across linear and quadratic functions of age. Statistical significance was determined with bootstrap confidence intervals and the Wald test with p < .05. Age-by-sex specific centiles were generated and the 50th percentile was used to describe the overall patterns. Standing broad jump scores increased steadily in boys from age 11 through 18 years with a discrete plateau at the end of adolescence. Girls' standing broad jump scores of those who performed above the median increased with age and plateaued later in the adolescence. Both linear and quadratic age terms were statistically significant predictors of standing broad jump trends across age (p < .05), but the relations varied depending on the percentile. The 50th percentile values resulted in 147.0 cm, 162.0 cm, 175.0 cm, 186.0 cm, 195.0 cm, 202.0 cm, 207.0 cm, and 210.0 cm for boys aged 11 to 18 years old, respectively, and 140.0 cm, 143.9 cm, 147.3 cm, 150.0 cm, 152.1 cm, 153.7 cm, 154.6 cm, and 155.0 cm for girls aged 11 to 18 years old, respectively. This study provides normative reference charts that take into account age and sex differences in standing broad jump performance. The proposed reference values can be used to interpret standing broad jump scores in Hungarian youth.

SphinX Measurements of the 2009 Solar Minimum X-Ray Emission

NASA Astrophysics Data System (ADS)

Sylwester, J.; Kowalinski, M.; Gburek, S.; Siarkowski, M.; Kuzin, S.; Farnik, F.; Reale, F.; Phillips, K. J. H.; Bakała, J.; Gryciuk, M.; Podgorski, P.; Sylwester, B.

2012-06-01

The SphinX X-ray spectrophotometer on the CORONAS-PHOTON spacecraft measured soft X-ray emission in the 1-15 keV energy range during the deep solar minimum of 2009 with a sensitivity much greater than GOES. Several intervals are identified when the X-ray flux was exceptionally low, and the flux and solar X-ray luminosity are estimated. Spectral fits to the emission at these times give temperatures of 1.7-1.9 MK and emission measures between 4 × 1047 cm-3 and 1.1 × 1048 cm-3. Comparing SphinX emission with that from the Hinode X-ray Telescope, we deduce that most of the emission is from general coronal structures rather than confined features like bright points. For one of 27 intervals of exceptionally low activity identified in the SphinX data, the Sun's X-ray luminosity in an energy range roughly extrapolated to that of ROSAT (0.1-2.4 keV) was less than most nearby K and M dwarfs.

Evidence of long-term seasonal climate forcing in rhizolith isotopes during the last glaciation

USGS Publications Warehouse

Wang, Hongfang; Ambrose, S.H.; Fouke, B.W.

2004-01-01

High density carbonate rhizoliths were found from a loess-paleosol succession from the late Wisconsin period (21-11 ka) in Illinois. Their morphology shows that they formed in a close contact with living and decomposing roots, suggesting a root/microbial respiration origin. Carbon (??13C) and oxygen (??18O) isotopic analyses were performed on 36 and 37 individual rhizoliths of two separate 10 cm intervals and 98 bulk rhizoliths of all 10 cm intervals. The results of the individual rhizolith ??13C and ??18O analyses suggest that the carbon source was largely derived from respiring C3, C4 and microbial biomass, and that meteoric water was controlled mainly by warm-season precipitation. The results of bulk rhizolith ??13C and ??18O analyses show that warm-season proxies varied in phase with glacial fluctuations at submillennial scales, suggesting long-term seasonal forcing may have played an important role on climate change during the late Wisconsin glaciation in North America. Copyright 2004 by the American Geophysical Union.

Flexural uplift of rift flanks in central Greece

NASA Astrophysics Data System (ADS)

Poulimenos, George; Doutsos, Theodor

1997-12-01

Uplifts, with elevations of up to 2000 m and short wavelengths (30-35 km), flank three major grabens in central Greece: the Rio, Sparta, and Atalanti grabens. They are bordered on their landward sides by narrow basins oriented parallel to the graben axes: the Manesi and Trichonis basins at the Rio graben and Copais and Istiea basins at the Atalanti graben. The flexural origin of these uplift profiles is investigated here by using thin, broken plate models. It is demonstrated that the observed topography of the graben flanks is consistent with the upward deflection of elastic and viscoelastic plates in response to upward directed forces applied at the graben flanks. In order to evaluate to applicability of each model, their predictions are checked against the observations. The elastic predictive modeling fits well with the observed flexural wavelengths and the flanking seismicity. However, it fails to predict the graben widths and the inferred elastic layer thickness. In contrast, the viscoelastic model successfully explains the graben widths and the "back" basins as flexural hinterland basins and matches the seismological data and the time constraints of rifting. It is therefore suggested that flexural uplift with viscoelastic relaxation accounts for the building of the graben flanks. The invoked viscoelastic models constrain the effective elastic thickness of the plates at 10 km for the Rio graben and 15 km for the Sparta and Atalanti grabens, suggesting a low-viscosity lower crust. Furthermore, they predict low rates of tectonic uplift of the order of 0.1 mm a-1 for the Atalanti graben, intermediate rates of 0.24-0.37 mm a-1 for the Rio graben, and high rates of 0.7-0.9 mm a-1 for the Sparta graben. The latter are quite possibly overestimated since napping events, capable of producing high local relief, are traced normal to the modeled profiles.

Lava-flow hazard on the SE flank of Mt. Etna (Southern Italy)

NASA Astrophysics Data System (ADS)

Crisci, G. M.; Iovine, G.; Di Gregorio, S.; Lupiano, V.

2008-11-01

A method for mapping lava-flow hazard on the SE flank of Mt. Etna (Sicily, Southern Italy) by applying the Cellular Automata model SCIARA -fv is described, together with employed techniques of calibration and validation through a parallel Genetic Algorithm. The study area is partly urbanised; it has repeatedly been affected by lava flows from flank eruptions in historical time, and shows evidence of a dominant SSE-trending fracture system. Moreover, a dormant deep-seated gravitational deformation, associated with a larger volcano-tectonic phenomenon, affects the whole south-eastern flank of the volcano. The Etnean 2001 Mt. Calcarazzi lava-flow event has been selected for model calibration, while validation has been performed by considering the 2002 Linguaglossa and the 1991-93 Valle del Bove events — suitable data for back analysis being available for these recent eruptions. Quantitative evaluation of the simulations, with respect to the real events, has been performed by means of a couple of fitness functions, which consider either the areas affected by the lava flows, or areas and eruption duration. Sensitivity analyses are in progress for thoroughly evaluating the role of parameters, topographic input data, and mesh geometry on model performance; though, preliminary results have already given encouraging responses on model robustness. In order to evaluate lava-flow hazard in the study area, a regular grid of n.340 possible vents, uniformly covering the study area and located at 500 m intervals, has been hypothesised. For each vent, a statistically-significant number of simulations has been planned, by adopting combinations of durations, lava volumes, and effusion-rate functions, selected by considering available volcanological data. Performed simulations have been stored in a GIS environment for successive analyses and map elaboration. Probabilities of activation, empirically based on past behaviour of the volcano, can be assigned to each vent of the grid, by considering its elevation, location with respect to the volcanic edifice, and proximity to its main weakness zones. Similarly, different probabilities can be assigned to the simulated event types (combinations of durations and lava volumes, and to the effusion-rate functions considered). In such a way, an implicit assumption is made that the volcanic style will not dramatically change in the near future. Depending on adopted criteria for probability evaluation, different maps of lava-flow hazard can be compiled, by taking into account both the overlapping of the simulated lava flows and their assumed probabilities, and by finally ranking computed values into few relative classes. The adopted methodology allows to rapidly exploring changes in lava-flow hazard as a function of varying probabilities of occurrence, by simply re-processing the database of the simulations stored in the GIS. For Civil Protection purposes, in case of expected imminent opening of a vent in a given sector of the volcano, re-processing may help in real-time forecasting the presumable affected areas, and thus in better managing the eruptive crisis. Moreover, further simulations can be added to the GIS data base at any time new different event types were recognised to be of interest. In this paper, three examples of maps of lava-flow hazard for the SE flank of Mt. Etna are presented: the first has been realised without assigning any probability to the performed simulations, by simply counting the frequencies of lava flows affecting each site; in the second map, information on past eruptions is taken into account, and probabilities are empirically attributed to each simulation based on location of vents and types of eruption; in the third one, a stronger role is ascribed to the main SSE-trending weakness zone, which crosses the study area between Nicolosi and Trecastagni, associated with the right flank of the above-cited deep-seated deformation. Despite being only preliminary (as based on a sub-set of the overall planned simulations), the maps clearly depict the most hazardous sectors of the volcano, which have been identified by applying the coupled modelling-GIS method here described.

Space Radar Image of Kliuchevskoi Volcano, Russia

NASA Technical Reports Server (NTRS)

1994-01-01

This is an image of the Kliuchevskoi volcano, Kamchatka, Russia, which began to erupt on September 30, 1994. Kliuchevskoi is the bright white peak surrounded by red slopes in the lower left portion of the image. The image was acquired by the Spaceborne Imaging Radar-C and X-band Synthetic Aperture Radar aboard the space shuttle Endeavour on its 25th orbit on October 1, 1994. The image shows an area approximately 30 kilometers by 60 kilometers (18.5 miles by 37 miles) that is centered at 56.18 degrees north latitude and 160.78 degrees east longitude. North is toward the top of the image. The Kamchatka volcanoes are among the most active volcanoes in the world. The volcanic zone sits above a tectonic plate boundary, where the Pacific plate is sinking beneath the northeast edge of the Eurasian plate. The Endeavour crew obtained dramatic video and photographic images of this region during the eruption, which will assist scientists in analyzing the dynamics of the current activity. The colors in this image were obtained using the following radar channels: red represents the L-band (horizontally transmitted and received); green represents the L-band (horizontally transmitted and vertically received); blue represents the C-band (horizontally transmitted and vertically received). The Kamchatka River runs from left to right across the image. An older, dormant volcanic region appears in green on the north side of the river. The current eruption included massive ejections of gas, vapor and ash, which reached altitudes of 20,000 meters (65,000 feet). New lava flows are visible on the flanks of Kliuchevskoi, appearing yellow/green in the image, superimposed on the red surfaces in the lower center. Melting snow triggered mudflows on the north flank of the volcano, which may threaten agricultural zones and other settlements in the valley to the north. Spaceborne Imaging Radar-C and X-band Synthetic Aperture Radar (SIR-C/X-SAR) is part of NASA's Mission to Planet Earth. The radars illuminate Earth with microwaves, allowing detailed observations at any time, regardless of weather or sunlight conditions. SIR-C/X-SAR uses three microwave wavelengths: L-band (24 cm), C-band (6 cm) and X-band (3 cm). The multi-frequency data will be used by the international scientific community to better understand the global environment and how it is changing. The SIR-C/X-SAR data, complemented by aircraft and ground studies, will give scientists clearer insights into those environmental changes which are caused by nature and those changes which are induced by human activity. SIR-C was developed by NASA's Jet Propulsion Laboratory. X-SAR was developed by the Dornier and Alenia Spazio companies for the German space agency, Deutsche Agentur fuer Raumfahrtangelegenheiten (DARA), and the Italian space agency, Agenzia Spaziale Italiana (ASI), with the Deutsche Forschungsanstalt fuer Luft und Raumfahrte.v. (DLR), the major partner in science, operations and data processing of X-SAR.