Highly Acidic Ambient Particles, Soluble Metals, and Oxidative Potential: A Link between Sulfate and Aerosol Toxicity.

PubMed

Fang, Ting; Guo, Hongyu; Zeng, Linghan; Verma, Vishal; Nenes, Athanasios; Weber, Rodney J

2017-03-07

Soluble transition metals in particulate matter (PM) can generate reactive oxygen species in vivo by redox cycling, leading to oxidative stress and adverse health effects. Most metals, such as those from roadway traffic, are emitted in an insoluble form, but must be soluble for redox cycling. Here we present the mechanism of metals dissolution by highly acidic sulfate aerosol and the effect on particle oxidative potential (OP) through analysis of size distributions. Size-segregated ambient PM were collected from a road-side and representative urban site in Atlanta, GA. Elemental and organic carbon, ions, total and water-soluble metals, and water-soluble OP were measured. Particle pH was determined with a thermodynamic model using measured ionic species. Sulfate was spatially uniform and found mainly in the fine mode, whereas total metals and mineral dust cations were highest at the road-side site and in the coarse mode, resulting in a fine mode pH < 2 and near neutral coarse mode. Soluble metals and OP peaked at the intersection of these modes demonstrating that sulfate plays a key role in producing highly acidic fine aerosols capable of dissolving primary transition metals that contribute to aerosol OP. Sulfate-driven metals dissolution may account for sulfate-health associations reported in past studies.

Mode Tracker for Mode-Hop-Free Operation of a Laser

NASA Technical Reports Server (NTRS)

Wysocki, Gerard; Tittel, Frank K.; Curl, Robert F.

2010-01-01

A mode-tracking system that includes a mode-controlling subsystem has been incorporated into an external-cavity (EC) quantum cascade laser that operates in a mid-infrared wavelength range. The mode-tracking system makes it possible to perform mode-hop-free wavelength scans, as needed for high-resolution spectroscopy and detection of trace gases. The laser includes a gain chip, a beam-collimating lens, and a diffraction grating. The grating is mounted on a platform, the position of which can be varied to effect independent control of the EC length and the grating angle. The position actuators include a piezoelectric stage for translation control and a motorized stage for coarse rotation control equipped with a piezoelectric actuator for fine rotation control. Together, these actuators enable control of the EC length over a range of about 90 m with a resolution of 0.9 nm, and control of the grating angle over a coarse-tuning range of +/-6.3deg and a fine-tuning range of +/-520 microrad with a resolution of 10 nrad. A mirror mounted on the platform with the grating assures always the same direction of the output laser beam.

Large-scale comparison of protein essential dynamics from molecular dynamics simulations and coarse-grained normal mode analyses.

PubMed

Ahmed, Aqeel; Villinger, Saskia; Gohlke, Holger

2010-12-01

A large-scale comparison of essential dynamics (ED) modes from molecular dynamic simulations and normal modes from coarse-grained normal mode methods (CGNM) was performed on a dataset of 335 proteins. As CGNM methods, the elastic network model (ENM) and the rigid cluster normal mode analysis (RCNMA) were used. Low-frequency normal modes from ENM correlate very well with ED modes in terms of directions of motions and relative amplitudes of motions. Notably, a similar performance was found if normal modes from RCNMA were used, despite a higher level of coarse graining. On average, the space spanned by the first quarter of ENM modes describes 84% of the space spanned by the five ED modes. Furthermore, no prominent differences for ED and CGNM modes among different protein structure classes (CATH classification) were found. This demonstrates the general potential of CGNM approaches for describing intrinsic motions of proteins with little computational cost. For selected cases, CGNM modes were found to be more robust among proteins that have the same topology or are of the same homologous superfamily than ED modes. In view of recent evidence regarding evolutionary conservation of vibrational dynamics, this suggests that ED modes, in some cases, might not be representative of the underlying dynamics that are characteristic of a whole family, probably due to insufficient sampling of some of the family members by MD. Copyright © 2010 Wiley-Liss, Inc.

Characterizing temporal changes of agricultural particulate matter number concentrations

NASA Astrophysics Data System (ADS)

Docekal, G. P.; Mahmood, R.; Larkin, G. P.; Silva, P. J.

2017-12-01

It is widely accepted among literature that particulate matter (PM) are of detriment to human health and the environment as a whole. These effects can vary depending on the particle size. This study examines PM size distributions and number concentrations at a poultry house. Despite much literature on PM concentrations at agricultural facilities, few studies have looked at the size distribution of particles at such facilities from the nucleation up through the coarse mode. Two optical particle counters (OPCs) were placed, one inside of a chicken house, and one on the outside of an exhaust fan to determine particle size distributions. In addition, a scanning mobility particle sizer (SMPS) and aerodynamic particle sizer (APS) sampled poultry house particles to give sizing information from a full size range of 10 nm - 20 mm. The data collected show several different types of events where observed size distributions changed. While some of these are due to expected dust generation events producing coarse mode particles, others suggest particle nucleation and accumulation events at the smaller size ranges that also occurred. The data suggest that agricultural facilities have an impact one the presence of PM in the environment beyond just generation of coarse mode dust. Data for different types of size distribution changes observed will be discussed.

High time-resolved elemental components in fine and coarse particles in the Pearl River Delta region of Southern China: Dynamic variations and effects of meteorology.

PubMed

Zhou, Shengzhen; Davy, Perry K; Wang, Xuemei; Cohen, Jason Blake; Liang, Jiaquan; Huang, Minjuan; Fan, Qi; Chen, Weihua; Chang, Ming; Ancelet, Travis; Trompetter, William J

2016-12-01

Hourly-resolved PM 2.5 and PM 10-2.5 samples were collected in the industrial city Foshan in the Pearl River Delta region, China. The samples were subsequently analyzed for elemental components and black carbon (BC). A key purpose of the study was to understand the composition of particulate matter (PM) at high-time resolution in a polluted urban atmosphere to identify key components contributing to extreme PM concentration events and examine the diurnal chemical concentration patterns for air quality management purposes. It was found that BC and S concentrations dominated in the fine mode, while elements with mostly crustal and oceanic origins such as Si, Ca, Al and Cl were found in the coarse size fraction. Most of the elements showed strong diurnal variations. S did not show clear diurnal variations, suggesting regional rather than local origin. Based on empirical orthogonal functions (EOF) method, 3 forcing factors were identified contributing to the extreme events of PM 2.5 and selected elements, i.e., urban direct emissions, wet deposition and a combination of coarse mode sources. Conditional probability functions (CPF) were performed using wind profiles and elemental concentrations. The CPF results showed that BC and elemental Cl, K, Fe, Cu and Zn in the fine mode were mostly from the northwest, indicating that industrial emissions and combustion were the main sources. For elements in the coarse mode, Si, Al, K, Ca, Fe and Ti showed similar patterns, suggesting same sources such as local soil dust/construction activities. Coarse elemental Cl was mostly from the south and southeast, implying the influence of marine aerosol sources. For other trace elements, we found vanadium (V) in fine PM was mainly from the sources located to the southeast of the measuring site. Combined with CPF results of S and V in fine PM, we concluded shipping emissions were likely an important elemental emission source. Copyright © 2016. Published by Elsevier B.V.

Seasonal characteristics of water-soluble inorganic ions and carbonaceous aerosols in total suspended particulate matter at a rural semi-arid site, Kadapa (India).

PubMed

Begam, G Reshma; Vachaspati, C Viswanatha; Ahammed, Y Nazeer; Kumar, K Raghavendra; Reddy, R R; Sharma, S K; Saxena, Mohit; Mandal, T K

2017-01-01

To better understand the sources as well as characterization of regional aerosols at a rural semi-arid region Kadapa (India), size-resolved composition of atmospheric particulate matter (PM) mass concentrations was sampled and analysed. This was carried out by using the Anderson low-pressure impactor for a period of 2 years during March 2013-February 2015. Also, the variations of organic carbon (OC), elemental carbon (EC) and water-soluble inorganic ion components (WSICs) present in total suspended particulate matter (TSPM) were studied over the measurement site. From the statistical analysis, the PM mass concentration showed a higher abundance of coarse mode particles than the fine mode during pre-monsoon season. In contrast, fine mode particles in the PM concentration showed dominance over coarse mode particle contribution during the winter. During the post-monsoon season, the percentage contributions of coarse and fine fractions were equal, whereas during the monsoon, coarse mode fraction was approximately 26 % higher than the fine mode. This distinct feature in the case of fine mode particles during the studied period is mainly attributed to large-scale anthropogenic activities and regional prevailing meteorological conditions. Further, the potential sources of PM have been identified qualitatively by using the ratios of certain ions. A high sulphate (SO 4 ) concentration at the measurement site was observed during the studied period which is caused by the nearby/surrounding mining activity. Carbon fractions (OC and EC) were also analysed from the TSPM, and the results indicated (OC/EC ratio of ~4.2) the formation of a secondary organic aerosol. At last, the cluster backward trajectory analyses were also performed at Kadapa for different seasons to reveal the origin of sources from long-range transport during the study period.

The Messy Aerosol Submodel MADE3 (v2.0b): Description and a Box Model Test

NASA Technical Reports Server (NTRS)

Kaiser, J. C.; Hendricks, J.; Righi, M.; Riemer, N.; Zaveri, R. A.; Metzger, S.; Aquila, Valentina

2014-01-01

We introduce MADE3 (Modal Aerosol Dynamics model for Europe, adapted for global applications, 3rd generation), an aerosol dynamics submodel for application within the MESSy framework (Modular Earth Submodel System). MADE3 builds on the predecessor aerosol submodels MADE and MADE-in. Its main new features are the explicit representation of coarse particle interactions both with other particles and with condensable gases, and the inclusion of hydrochloric acid (HCl)chloride (Cl) partitioning between the gas and condensed phases. The aerosol size distribution is represented in the new submodel as a superposition of nine lognormal modes: one for fully soluble particles, one for insoluble particles, and one for mixed particles in each of three size ranges (Aitken, accumulation, and coarse mode size ranges). In order to assess the performance of MADE3 we compare it to its predecessor MADE and to the much more detailed particle-resolved aerosol model PartMC-MOSAIC in a box model simulation of an idealized marine boundary layer test case. MADE3 and MADE results are very similar, except in the coarse mode, where the aerosol is dominated by sea spray particles. Cl is reduced in MADE3 with respect to MADE due to the HClCl partitioning that leads to Cl removal from the sea spray aerosol in our test case. Additionally, aerosol nitrate concentration is higher in MADE3 due to the condensation of nitric acid on coarse particles. MADE3 and PartMC- MOSAIC show substantial differences in the fine particle size distributions (sizes about 2 micrometers) that could be relevant when simulating climate effects on a global scale. Nevertheless, the agreement between MADE3 and PartMC-MOSAIC is very good when it comes to coarse particle size distribution, and also in terms of aerosol composition. Considering these results and the well-established ability of MADE in reproducing observed aerosol loadings and composition, MADE3 seems suitable for application within a global model.

Ensemble Empirical Mode Decomposition based methodology for ultrasonic testing of coarse grain austenitic stainless steels.

PubMed

Sharma, Govind K; Kumar, Anish; Jayakumar, T; Purnachandra Rao, B; Mariyappa, N

2015-03-01

A signal processing methodology is proposed in this paper for effective reconstruction of ultrasonic signals in coarse grained high scattering austenitic stainless steel. The proposed methodology is comprised of the Ensemble Empirical Mode Decomposition (EEMD) processing of ultrasonic signals and application of signal minimisation algorithm on selected Intrinsic Mode Functions (IMFs) obtained by EEMD. The methodology is applied to ultrasonic signals obtained from austenitic stainless steel specimens of different grain size, with and without defects. The influence of probe frequency and data length of a signal on EEMD decomposition is also investigated. For a particular sampling rate and probe frequency, the same range of IMFs can be used to reconstruct the ultrasonic signal, irrespective of the grain size in the range of 30-210 μm investigated in this study. This methodology is successfully employed for detection of defects in a 50mm thick coarse grain austenitic stainless steel specimens. Signal to noise ratio improvement of better than 15 dB is observed for the ultrasonic signal obtained from a 25 mm deep flat bottom hole in 200 μm grain size specimen. For ultrasonic signals obtained from defects at different depths, a minimum of 7 dB extra enhancement in SNR is achieved as compared to the sum of selected IMF approach. The application of minimisation algorithm with EEMD processed signal in the proposed methodology proves to be effective for adaptive signal reconstruction with improved signal to noise ratio. This methodology was further employed for successful imaging of defects in a B-scan. Copyright © 2014. Published by Elsevier B.V.

Aerosol optical properties of Western Mediterranean basin from multi-year AERONET data

NASA Astrophysics Data System (ADS)

Benkhalifa, Jamel; Léon, Jean François; Chaabane, Mabrouk

2017-11-01

Aerosol optical properties including the total and coarse mode aerosol extinction optical depth (AODt and AODc respectively), Angstrom exponent (AE), size distribution, single scattering albedo (SSA) were examined using long-term ground-based radiometric measurements at 9 sites in the Western Mediterranean: Oujda, Malaga, Barcelona, Carpentras, Rome Tor Vergata, Ersa, Ispra, Venice and Evora, during the 4-year study period (2010-2013). The South-North gradient in the fraction of AODc represents the signature of the increasing influence of coarse particles on the optical properties at southern stations. This fraction has a daily mean ranging from 48 ± 18% at the southern site Oujda and to 8 ± 8% at Ispra. The low average AE444-870 value (<0.7) at Oujda confirms the major influence of large dust particles. Conversely, the AOD at urban stations are dominated by fine mode particles. The Angstrom Exponent (AE444-870) above 1.5 in Ispra and Venice indicates an atmospheric situation corresponding to the urban pollution controlled by small particles. We have analyzed the intrinsic dust optical properties by selecting the dusty days corresponding to a total optical depth above 0.3 and a fraction of the coarse mode optical depth above 30%. For these cases, the mean AODt during dusty days was shown to be close to 0.4. During dusty days, the coarse mode fraction represents 88% of the total volume at Oudja and above 83% for all other sites. There is a weak variability in the mean coarse mode volume median radius, showing an average of 1.98 ± 0.1. A maximum in the AODc was observed in the summer of 2012, with particular high events on June 27. The forward trajectory starting at Evora on June 27 clearly indicates that all the sites were affected by such dust events in the following days.

Comparative Investigation of Normal Modes and Molecular Dynamics of Hepatitis C NS5B Protein

NASA Astrophysics Data System (ADS)

Asafi, M. S.; Yildirim, A.; Tekpinar, M.

2016-04-01

Understanding dynamics of proteins has many practical implications in terms of finding a cure for many protein related diseases. Normal mode analysis and molecular dynamics methods are widely used physics-based computational methods for investigating dynamics of proteins. In this work, we studied dynamics of Hepatitis C NS5B protein with molecular dynamics and normal mode analysis. Principal components obtained from a 100 nanoseconds molecular dynamics simulation show good overlaps with normal modes calculated with a coarse-grained elastic network model. Coarse-grained normal mode analysis takes at least an order of magnitude shorter time. Encouraged by this good overlaps and short computation times, we analyzed further low frequency normal modes of Hepatitis C NS5B. Motion directions and average spatial fluctuations have been analyzed in detail. Finally, biological implications of these motions in drug design efforts against Hepatitis C infections have been elaborated.

Aerosol optical properties during firework, biomass burning and dust episodes in Beijing

NASA Astrophysics Data System (ADS)

Yu, Xingna; Shi, Chanzhen; Ma, Jia; Zhu, Bin; Li, Mei; Wang, Jing; Yang, Suying; Kang, Na

2013-12-01

In order to characterize the aerosol optical properties during different pollution episodes that occurred in Beijing, the aerosol loading, scattering, and size distributions are presented using solar and sky radiance measurements from 2001 to 2010 in this paper. A much higher aerosol loading than the background level was observed during the pollution episodes. The average aerosol optical depth (AOD) is largest during dust episodes coupled with the lowest Ångström exponent (α), while higher AOD and lower α were more correlated with firework and biomass burning days. The total mean AOD at 440, 675, 870 and 1020 nm were 0.24, 0.49, 0.64 and 1.38 in the clean, firework display, biomass burning and dust days, respectively. The mean α for dust days was 0.51 and exceeded 1.1 for the remaining episodes. The size distribution of the dusty periods was dominated by the coarse mode, but the coarse mode was similar magnitude to the fine mode during the firework and biomass burning days. The volume concentration of the coarse mode during the dust days increased by a magnitude of more than 2-8 times that derived in the other three aerosol conditions, suggesting that dust is the major contributor of coarse mode particles in Beijing. The single scattering albedo (SSA) values also increased during the pollution episodes. The overall mean SSA at the four wavelengths were 0.865, 0.911, 0.922 and 0.931 in clean, firework display, biomass burning, and dust days in Beijing, respectively. However, in the blue spectral range, the dust aerosols exhibited pronounced absorption.

A combined emitter threat assessment method based on ICW-RCM

NASA Astrophysics Data System (ADS)

Zhang, Ying; Wang, Hongwei; Guo, Xiaotao; Wang, Yubing

2017-08-01

Considering that the tradition al emitter threat assessment methods are difficult to intuitively reflect the degree of target threaten and the deficiency of real-time and complexity, on the basis of radar chart method(RCM), an algorithm of emitter combined threat assessment based on ICW-RCM (improved combination weighting method, ICW) is proposed. The coarse sorting is integrated with fine sorting in emitter combined threat assessment, sequencing the emitter threat level roughly accordance to radar operation mode, and reducing task priority of the low-threat emitter; On the basis of ICW-RCM, sequencing the same radar operation mode emitter roughly, finally, obtain the results of emitter threat assessment through coarse and fine sorting. Simulation analyses show the correctness and effectiveness of this algorithm. Comparing with classical method of emitter threat assessment based on CW-RCM, the algorithm is visual in image and can work quickly with lower complexity.

Aerosol Chemistry over a High Altitude Station at Northeastern Himalayas, India

PubMed Central

Chatterjee, Abhijit; Adak, Anandamay; Singh, Ajay K.; Srivastava, Manoj K.; Ghosh, Sanjay K.; Tiwari, Suresh; Devara, Panuganti C. S.; Raha, Sibaji

2010-01-01

Background There is an urgent need for an improved understanding of the sources, distributions and properties of atmospheric aerosol in order to control the atmospheric pollution over northeastern Himalayas where rising anthropogenic interferences from rapid urbanization and development is becoming an increasing concern. Methodology/Principal Findings An extensive aerosol sampling program was conducted in Darjeeling (altitude ∼2200 meter above sea level (masl), latitude 27°01′N and longitude 88°15′E), a high altitude station in northeastern Himalayas, during January–December 2005. Samples were collected using a respirable dust sampler and a fine dust sampler simultaneously. Ion chromatograph was used to analyze the water soluble ionic species of aerosol. The average concentrations of fine and coarse mode aerosol were found to be 29.5±20.8 µg m−3 and 19.6±11.1 µg m−3 respectively. Fine mode aerosol dominated during dry seasons and coarse mode aerosol dominated during monsoon. Nitrate existed as NH4NO3 in fine mode aerosol during winter and as NaNO3 in coarse mode aerosol during monsoon. Gas phase photochemical oxidation of SO2 during premonsoon and aqueous phase oxidation during winter and postmonsoon were the major pathways for the formation of SO4 2− in the atmosphere. Long range transport of dust aerosol from arid regions of western India was observed during premonsoon. The acidity of fine mode aerosol was higher in dry seasons compared to monsoon whereas the coarse mode acidity was higher in monsoon compared to dry seasons. Biomass burning, vehicular emissions and dust particles were the major types of aerosol from local and continental regions whereas sea salt particles were the major types of aerosol from marine source regions. Conclusions/Significance The year-long data presented in this paper provide substantial improvements to the heretofore poor knowledge regarding aerosol chemistry over northeastern Himalayas, and should be useful to policy makers in making control strategies. PMID:20585397

Aerosol chemistry over a high altitude station at northeastern Himalayas, India.

PubMed

Chatterjee, Abhijit; Adak, Anandamay; Singh, Ajay K; Srivastava, Manoj K; Ghosh, Sanjay K; Tiwari, Suresh; Devara, Panuganti C S; Raha, Sibaji

2010-06-16

There is an urgent need for an improved understanding of the sources, distributions and properties of atmospheric aerosol in order to control the atmospheric pollution over northeastern Himalayas where rising anthropogenic interferences from rapid urbanization and development is becoming an increasing concern. An extensive aerosol sampling program was conducted in Darjeeling (altitude approximately 2200 meter above sea level (masl), latitude 27 degrees 01'N and longitude 88 degrees 15'E), a high altitude station in northeastern Himalayas, during January-December 2005. Samples were collected using a respirable dust sampler and a fine dust sampler simultaneously. Ion chromatograph was used to analyze the water soluble ionic species of aerosol. The average concentrations of fine and coarse mode aerosol were found to be 29.5+/-20.8 microg m(-3) and 19.6+/-11.1 microg m(-3) respectively. Fine mode aerosol dominated during dry seasons and coarse mode aerosol dominated during monsoon. Nitrate existed as NH(4)NO(3) in fine mode aerosol during winter and as NaNO(3) in coarse mode aerosol during monsoon. Gas phase photochemical oxidation of SO(2) during premonsoon and aqueous phase oxidation during winter and postmonsoon were the major pathways for the formation of SO(4)(2-) in the atmosphere. Long range transport of dust aerosol from arid regions of western India was observed during premonsoon. The acidity of fine mode aerosol was higher in dry seasons compared to monsoon whereas the coarse mode acidity was higher in monsoon compared to dry seasons. Biomass burning, vehicular emissions and dust particles were the major types of aerosol from local and continental regions whereas sea salt particles were the major types of aerosol from marine source regions. The year-long data presented in this paper provide substantial improvements to the heretofore poor knowledge regarding aerosol chemistry over northeastern Himalayas, and should be useful to policy makers in making control strategies.

The Ribosome Shape Directs mRNA Translocation through Entrance and Exit Dynamics

USDA-ARS?s Scientific Manuscript database

The protein-synthesizing ribosome undergoes large motions to effect the translocation of tRNAs (transfer ribonucleic acids) and mRNA (messenger ribonucleic acid); here the domain motions of this system are explored with a coarse-grained elastic network model using normal mode analysis. Crystal struc...

Aerosol size distribution characteristics of organosulfates in the Pearl River Delta region, China

NASA Astrophysics Data System (ADS)

Kuang, Bin Yu; Lin, Peng; Hu, Min; Yu, Jian Zhen

2016-04-01

Organosulfates (OSs) have been detected in various atmospheric environments, but their particle size distribution characteristics are unknown. In this work, we examined their size distributions in ambient aerosols to gain insights into the formation processes. Size-segregated aerosol samples in the range of 0.056-18 μm were collected using a ten-stage impactor at a receptor site in Hong Kong in both summer and winter and in Nansha in the Pearl River Delta in winter. The humic-like substances fraction in the size-segregated samples was isolated and analyzed using electrospray ionization coupled with an Orbitrap Ultra High Resolution Mass Spectrometer. Through accurate mass measurements, ∼190 CHOS and ∼90 CHONS formulas were tentatively identified to be OS compounds. Among them, OS compounds derived from isoprene, α-/β-pinene, and limonene and alkyl OSs having low double bond equivalents (DBE = 0,1) and 0-2 extra O beyond those in -OSO3 were found with high intensity. The biogenic volatile organic compounds-derived OS formulas share a common characteristic with sulfate in that the droplet mode dominated, peaking in either 0.56-1.0 or 1.0-1.8 μm size bin, reflecting sulfate as their common precursor. Most of these OSs have a minor coarse mode, accounting for 0-45%. The presence of OSs on the coarse particles is hypothesized to be a result of OSs on small particle (<0.32 μm) coagulating with coarse particles, as the abundance ratios of OS to non-sea-salt sulfate present on the coarse particles were similar to those on particles <0.32 μm. Among a few pairs of CHONS and CHOS that could be linked up through hydrolysis of a nitrooxy group in the CHONS form (e.g., m/z 294: C10H16O7NS- vs. m/z 249 C10H17O5S- from α/β-pinene, differing by (+H2O-HNO3)), the CHONS compounds had an enhanced coarse mode presence. This could be interpreted as a result of slower hydrolysis of the CHONS compounds on the alkali coarse particles. The low DBE alkyl OS compounds have a dominant droplet mode at the Hong Kong site, but a more significant coarse mode presence was observed for CnH2n+1O4S-, CnH2n-1O4S-, and CnH2n-1O5S- formulas in the Nansha site, possibly suggesting site-specific mixed secondary and primary sources for these formulas.

Utilization of AERONET polarimetric measurements for improving retrieval of aerosol microphysics: GSFC, Beijing and Dakar data analysis

NASA Astrophysics Data System (ADS)

Fedarenka, Anton; Dubovik, Oleg; Goloub, Philippe; Li, Zhengqiang; Lapyonok, Tatyana; Litvinov, Pavel; Barel, Luc; Gonzalez, Louis; Podvin, Thierry; Crozel, Didier

2016-08-01

The study presents the efforts on including the polarimetric data to the routine inversion of the radiometric ground-based measurements for characterization of the atmospheric aerosols and analysis of the obtained advantages in retrieval results. First, to operationally process the large amount of polarimetric data the data preparation tool was developed. The AERONET inversion code adapted for inversion of both intensity and polarization measurements was used for processing. Second, in order to estimate the effect from utilization of polarimetric information on aerosol retrieval results, both synthetic data and the real measurements were processed using developed routine and analyzed. The sensitivity study has been carried out using simulated data based on three main aerosol models: desert dust, urban industrial and urban clean aerosols. The test investigated the effects of utilization of polarization data in the presence of random noise, bias in measurements of optical thickness and angular pointing shift. The results demonstrate the advantage of polarization data utilization in the cases of aerosols with pronounced concentration of fine particles. Further, the extended set of AERONET observations was processed. The data for three sites have been used: GSFC, USA (clean urban aerosol dominated by fine particles), Beijing, China (polluted industrial aerosol characterized by pronounced mixture of both fine and coarse modes) and Dakar, Senegal (desert dust dominated by coarse particles). The results revealed considerable advantage of polarimetric data applying for characterizing fine mode dominated aerosols including industrial pollution (Beijing). The use of polarization corrects particle size distribution by decreasing overestimated fine mode and increasing the coarse mode. It also increases underestimated real part of the refractive index and improves the retrieval of the fraction of spherical particles due to high sensitivity of polarization to particle shape. Overall, the study demonstrates a substantial value of polarimetric data for improving aerosol characterization.

Winter-time size distribution and source apportionment of total suspended particulate matter and associated metals in Delhi

NASA Astrophysics Data System (ADS)

Srivastava, Arun; Gupta, Sandeep; Jain, V. K.

2009-03-01

A study of the winter time size distribution and source apportionment of total suspended particulate matter (TSPM) and associated heavy metal concentrations have been carried out for the city of Delhi. This study is important from the point of view of implementation of compressed natural gas (CNG) as alternate of diesel fuel in the public transport system in 2001 to reduce the pollution level. TSPM were collected using a five-stage cascade impactor at six sites in the winters of 2005-06. The results of size distribution indicate that a major portion (~ 40%) of TSPM concentration is in the form of PM0.7 (< 0.7 μm). Similar trends were observed with most of the heavy metals associated with various size fractions of TSPM. A very good correlation between coarse and fine size fraction of TSPM was observed. It was also observed that the metals associated with coarse particles have more chances of correlation with other metals; rather they are associated with fine particles. Source apportionment was carried out separately in coarse and fine size modes of TSPM by Chemical Mass Balance Receptor Model (CMB8) as well as by Principle Component Analysis (PCA) of SPSS. Source apportionment by PCA reveals that there are two major sources (possibly vehicular and crustal re-suspension) in both coarse and fine size fractions. Results obtained by CMB8 show the dominance of vehicular pollutants and crustal dust in fine and coarse size mode respectively. Noticeably the dominance of vehicular pollutants are now confined to fine size only whilst during pre CNG era it dominated both coarse and fine size mode. An increase of 42.5, 44.4, 48.2, 38.6 and 38.9% in the concentrations of TSPM, PM10.9, coarse particles, fine particles and lead respectively was observed during pre (2001) to post CNG (2005-06) period.

Coarse-Grained MD Simulations and Protein-Protein Interactions: The Cohesin-Dockerin System.

PubMed

Hall, Benjamin A; Sansom, Mark S P

2009-09-08

Coarse-grained molecular dynamics (CG-MD) may be applied as part of a multiscale modeling approach to protein-protein interactions. The cohesin-dockerin interaction provides a valuable test system for evaluation of the use of CG-MD, as structural (X-ray) data indicate a dual binding mode for the cohesin-dockerin pair. CG-MD simulations (of 5 μs duration) of the association of cohesin and dockerin identify two distinct binding modes, which resemble those observed in X-ray structures. For each binding mode, ca. 80% of interfacial residues are predicted correctly. Furthermore, each of the binding modes identified by CG-MD is conformationally stable when converted to an atomistic model and used as the basis of a conventional atomistic MD simulation of duration 20 ns.

Single Particulate SEM-EDX Analysis of Iron-Containing Coarse Particulate Matter in an Urban Environment: Sources and Distribution of Iron within Cleveland, Ohio

EPA Science Inventory

The physicochemical properties of coarse-mode, iron-containing particles, and their temporal and spatial distributions are poorly understood. Single particle analysis combining x-ray elemental mapping and computer-controlled scanning electron microscopy (CCSEM-EDX) of passively ...

Dicarboxylic acids, oxoacids, benzoic acid, α-dicarbonyls, WSOC, OC, and ions in spring aerosols from Okinawa Island in the western North Pacific Rim: size distributions and formation processes

NASA Astrophysics Data System (ADS)

Deshmukh, D. K.; Kawamura, K.; Lazaar, M.; Kunwar, B.; Boreddy, S. K. R.

2015-09-01

Size-segregated aerosols (9-stages from < 0.43 to > 11.3 μm in diameter) were collected at Cape Hedo, Okinawa in spring 2008 and analyzed for water-soluble diacids (C2-C12), ω-oxoacids (ωC2-ωC9), pyruvic acid, benzoic acid and α-dicarbonyls (C2-C3) as well as water-soluble organic carbon (WSOC), organic carbon (OC) and major ions. In all the size-segregated aerosols, oxalic acid (C2) was found as the most abundant species followed by malonic and succinic acids whereas glyoxylic acid (ωC2) was the dominant oxoacid and glyoxal (Gly) was more abundant than methylglyoxal. Diacids (C2-C5), ωC2 and Gly as well as WSOC and OC peaked at 0.65-1.1 μm in fine mode whereas azelaic (C9) and 9-oxononanoic (ωC9) acids peaked at 3.3-4.7 μm in coarse mode. Sulfate and ammonium are enriched in fine mode whereas sodium and chloride are in coarse mode. These results imply that water-soluble species in the marine aerosols could act as cloud condensation nuclei (CCN) to develop the cloud cover over the western North Pacific Rim. The organic species are likely produced by a combination of gas-phase photooxidation, and aerosol-phase or in-cloud processing during long-range transport. The coarse mode peaks of malonic and succinic acids were obtained in the samples with marine air masses, suggesting that they may be associated with the reaction on sea salt particles. Bimodal size distributions of longer-chain diacid (C9) and oxoacid (ωC9) with a major peak in the coarse mode suggest their production by photooxidation of biogenic unsaturated fatty acids via heterogeneous reactions on sea salt particles.

Chemical characterization and source apportionment of size-resolved particles in Hong Kong sub-urban area

NASA Astrophysics Data System (ADS)

Gao, Yuan; Lee, Shun-Cheng; Huang, Yu; Chow, Judith C.; Watson, John G.

2016-03-01

Size-resolved particulate matter (PM) samples were collected with a 10-stage Micro-Orifice Uniform Deposit Impactor (MOUDI) at a sub-urban site (Tung Chung) in Hong Kong for four non-consecutive months representing four seasons from 2011 to 2012. Major chemical components were water-soluble anions (i.e., Cl-, NO3-, and SO42 -), cations (i.e., NH4+, Na+, K+, and Ca2 +), organic and elemental carbon and elements. Both chemical mass closure and positive matrix factorization (PMF) were employed to understand the chemical composition, resolve particle size modes, and evaluate the PM sources. Tri-modal size distributions were found for PM mass and major chemical components (e.g., SO42 -, NH4+, and OC). Mass median aerodynamic diameters (MMADs) with similar standard deviations (1.32 < σ < 1.42) were 0.4, 0.7 and 3.8 μm, consistent with condensation, droplet and coarse modes. A bi-modal distribution peaking at condensation and droplet modes was found for EC, with a single mode peaking at 3.8 μm for Cl-. Besides secondary SO42 -, carbonaceous aerosol dominated the condensation mode with 27% by engine exhaust and 18-19% each by residual oil combustion (shipping) and coal/biomass burning. Secondary SO42 - is also the most dominant component in the droplet mode, accounting for 23% of PM mass, followed by an industrial source (19%). Engine exhaust, secondary NO3-, and sea salt each accounted for 13-15% of PM mass. Sea salt and soil are the dominated sources in the coarse mode, accounting for 80% of coarse mass.

Biology of the Coarse Aerosol Mode: Insights Into Urban Aerosol Ecology

NASA Astrophysics Data System (ADS)

Dueker, E.; O'Mullan, G. D.; Montero, A.

2015-12-01

Microbial aerosols have been understudied, despite implications for climate studies, public health, and biogeochemical cycling. Because viable bacterial aerosols are often associated with coarse aerosol particles, our limited understanding of the coarse aerosol mode further impedes our ability to develop models of viable bacterial aerosol production, transport, and fate in the outdoor environment, particularly in crowded urban centers. To address this knowledge gap, we studied aerosol particle biology and size distributions in a broad range of urban and rural settings. Our previously published findings suggest a link between microbial viability and local production of coarse aerosols from waterways, waste treatment facilities, and terrestrial systems in urban and rural environments. Both in coastal Maine and in New York Harbor, coarse aerosols and viable bacterial aerosols increased with increasing wind speeds above 4 m s-1, a dynamic that was observed over time scales ranging from minutes to hours. At a New York City superfund-designated waterway regularly contaminated with raw sewage, aeration remediation efforts resulted in significant increases of coarse aerosols and bacterial aerosols above that waterway. Our current research indicates that bacterial communities in aerosols at this superfund site have a greater similarity to bacterial communities in the contaminated waterway with wind speeds above 4 m s-1. Size-fractionated sampling of viable microbial aerosols along the urban waterfront has also revealed significant shifts in bacterial aerosols, and specifically bacteria associated with coarse aerosols, when wind direction changes from onshore to offshore. This research highlights the key connections between bacterial aerosol viability and the coarse aerosol fraction, which is important in assessments of production, transport, and fate of bacterial contamination in the urban environment.

Phason thermal transport of three-helix state in insulating chiral magnets

NASA Astrophysics Data System (ADS)

Tatara, Gen

2018-06-01

Thermal dynamics of the three-helix state in a chiral magnet is studied based on a phason representation. Although phason representation is convenient for intuitive description, it is not straightforwardly compatible with microscopic linear response calculation of transport phenomena, because it is a (semi)macroscopic picture obtained by a coarse graining. By separating the slow phason mode and fast magnon mode, we show that phason thermal dynamics is driven by thermal magnon flow via the spin-transfer effect. The magnon and phason velocities are calculated by use of thermal vector potential formalism.

Chemical composition, microstructure, and hygroscopic properties of aerosol particles at the Zotino Tall Tower Observatory (ZOTTO), Siberia, during a summer campaign

NASA Astrophysics Data System (ADS)

Mikhailov, E. F.; Mironov, G. N.; Pöhlker, C.; Chi, X.; Krüger, M. L.; Shiraiwa, M.; Förster, J.-D.; Pöschl, U.; Vlasenko, S. S.; Ryshkevich, T. I.; Weigand, M.; Kilcoyne, A. L. D.; Andreae, M. O.

2015-08-01

In this study we describe the hygroscopic properties of accumulation- and coarse-mode aerosol particles sampled at the Zotino Tall Tower Observatory (ZOTTO) in central Siberia (61° N, 89° E) from 16 to 21 June 2013. The hygroscopic growth measurements were supplemented with chemical analyses of the samples, including inorganic ions and organic/elemental carbon. In addition, the microstructure and chemical compositions of aerosol particles were analyzed by x-ray micro-spectroscopy (STXM-NEXAFS) and transmission electron microscopy (TEM). A mass closure analysis indicates that organic carbon accounted for 61 and 38 % of particulate matter (PM) in the accumulation mode and coarse mode, respectively. The water-soluble fraction of organic matter was estimated to be 52 and 8 % of PM in these modes. Sulfate, predominantly in the form of ammoniated sulfate, was the dominant inorganic component in both size modes: ~ 34 % in the accumulation mode vs. ~ 47 % in the coarse mode. The hygroscopic growth measurements were conducted with a filter-based differential hygroscopicity analyzer (FDHA) over the range of 5-99.4 % RH in the hydration and dehydration operation modes. The FDHA study indicates that both accumulation and coarse modes exhibit pronounced water uptake approximately at the same relative humidity (RH), starting at ~ 70 %, while efflorescence occurred at different humidities, i.e., at ~ 35 % RH for submicron particles vs. ~ 50 % RH for supermicron particles. This ~ 15 % RH difference was attributed to higher content of organic material in the submicron particles, which suppresses water release in the dehydration experiments. The kappa mass interaction model (KIM) was applied to characterize and parameterize non-ideal solution behavior and concentration-dependent water uptake by atmospheric aerosol samples in the 5-99.4 % RH range. Based on KIM, the volume-based hygroscopicity parameter, κv, was calculated. The κv,ws value related to the water-soluble (ws) fraction was estimated to be ~ 0.15 for the accumulation mode and ~ 0.36 for the coarse mode, respectively. The obtained κv,ws for the accumulation mode is in good agreement with earlier data reported for remote sites in the Amazon rain forest (κv ≈ 0.15) and a Colorado mountain forest (κv ≈ 0.16 ). We used the Zdanovskii-Stokes-Robinson (ZSR) mixing rule to predict the chemical composition dependent hygroscopicity, κv,p. The obtained κv,p values overestimate the experimental FDHA-KIM-derived κv,ws by factors of 1.8 and 1.5 for the accumulation and coarse modes, respectively. This divergence can be explained by incomplete dissolution of the hygroscopic inorganic compounds resulting from kinetic limitations due to a sparingly soluble organic coating. The TEM and STXM-NEXAFS results indicate that aged submicron (> 300 nm) and supermicron aerosol particles possess core-shell structures with an inorganic core, and are enriched in organic carbon at the mixed particle surface. The direct FDHA kinetic studies provide a bulk diffusion coefficient of water of ~ 10-12 cm2 s-1 indicating a semi-solid state of the organic-rich phase leading to kinetic limitations of water uptake and release during hydration and dehydration cycles. Overall, the present ZOTTO data set, obtained in the growing season, has revealed a strong influence of organic carbon on the hygroscopic properties of the ambient aerosols. The sparingly soluble organic coating controls hygroscopic growth, phase transitions, and microstructural rearrangement processes. The observed kinetic limitations can strongly influence the outcome of experiments performed on multi-second timescales, such as the commonly applied HTDMA (Hygroscopicity Tandem Differential Mobility Analyzer) and CCNC (Cloud Condensation Nuclei Counter) measurements.

Parameterizations of Dry Deposition for the Industrial Source Complex Model

NASA Astrophysics Data System (ADS)

Wesely, M. L.; Doskey, P. V.; Touma, J. S.

2002-05-01

Improved algorithms have been developed to simulate the dry deposition of hazardous air pollutants (HAPs) with the Industrial Source Complex model system. The dry deposition velocities are described in conventional resistance schemes, for which micrometeorological formulas are applied to describe the aerodynamic resistances above the surface. Pathways to uptake of gases at the ground and in vegetative canopies are depicted with several resistances that are affected by variations in air temperature, humidity, solar irradiance, and soil moisture. Standardized land use types and seasonal categories provide sets of resistances to uptake by various components of the surface. To describe the dry deposition of the large number of gaseous organic HAPS, a new technique based on laboratory study results and theoretical considerations has been developed to provide a means to evaluate the role of lipid solubility on uptake by the waxy outer cuticle of vegetative plant leaves. The dry deposition velocities of particulate HAPs are simulated with a resistance scheme in which deposition velocity is described for two size modes: a fine mode with particles less than about 2.5 microns in diameter and a coarse mode with larger particles but excluding very coarse particles larger than about 10 microns in diameter. For the fine mode, the deposition velocity is calculated with a parameterization based on observations of sulfate dry deposition. For the coarse mode, a representative settling velocity is assumed. Then the total deposition velocity is estimated as the sum of the two deposition velocities weighted according to the amount of mass expected in the two modes.

Chemical composition, microstructure, and hygroscopic properties of aerosol particles at the Zotino Tall Tower Observatory (ZOTTO), Siberia, during a summer campaign

DOE PAGES

Mikhailov, E. F.; Mironov, G. N.; Pöhlker, C.; ...

2015-03-16

In this study we describe the hygroscopic properties of accumulation- and coarse-mode aerosol particles sampled at the Zotino Tall Tower Observatory (ZOTTO) in Central Siberia (61° N; 89° E) from 16 to 21 June 2013. The hygroscopic growth measurements were supplemented with chemical analyses of the samples, including inorganic ions and organic/elemental carbon. In addition, the microstructure and chemical composition of aerosol particles were analyzed by X-ray micro-spectroscopy (STXM-NEXAFS) and transmission electron microscopy (TEM). A mass closure analysis indicates that organic carbon accounted for 61 and 38% of PM in the accumulation mode and coarse mode, respectively. The water solublemore » fraction of organic matter was estimated to be 52 and 8% of PM in these modes. Sulfate, predominantly in the form of ammoniated sulfate, was the dominant inorganic component in both size modes: ~ 34% in the accumulation vs. ~ 47% in the coarse mode. The hygroscopic growth measurements were conducted with a filter-based differential hygroscopicity analyzer (FDHA) over the range of 5–99.4% RH in the hydration and dehydration operation modes. The FDHA study indicates that both accumulation and coarse modes exhibit pronounced water uptake approximately at the same RH, starting at ~ 70%, while efflorescence occurred at different humidities, i.e., at ~ 35% RH for submicron particles vs. ~ 50% RH for supermicron particles. This ~ 15% RH difference was attributed to higher content of organic material in the submicron particles, which suppresses water release in the dehydration experiments. The kappa mass interaction model (KIM) was applied to characterize and parameterize non-ideal solution behavior and concentration-dependent water uptake by atmospheric aerosol samples in the 5–99.4% RH range. Based on KIM, the volume-based hygroscopicity parameter, κ v, was calculated. The κ v, ws value related to the water soluble (ws) fraction was estimated to be ~ 0.15 for the accumulation mode and ~ 0.36 for the coarse mode, respectively. The obtained κ v, ws for the accumulation mode is in good agreement with earlier data reported for remote sites in the Amazon rain forest (κ v ≈ 0.15) and a Colorado boreal forest (κ v ≈ 0.16). We used the Zdanovskii–Stokes–Robinson (ZSR) mixing rule to predict the chemical composition dependent hygroscopicity, κ v, p. The obtained κ v, p values overestimate the experimental FDHA-KIM-derived κ v, ws by factors of 1.8 and 1.5 for the accumulation and coarse modes, respectively. This divergence can be partly explained by incomplete dissolution of the hygroscopic inorganic compounds resulting from kinetic limitations due to a sparingly soluble organic coating. The TEM and STXM-NEXAFS results indicate that aged submicron (>300 nm) and supermicron aerosol particles possess core-shell structures with an inorganic core, and are enriched in organic carbon at the mixed particle surface. The direct FDHA kinetic studies provide a bulk diffusion coefficient of water of ~ 10 −12 cm 2 s −1 indicating a semi-solid state of the organic-rich phase leading to kinetic limitations of water uptake and release during hydration and dehydration cycles. Overall the present ZOTTO data set, obtained in the growing season, has revealed a strong influence of organic carbon on the hygroscopic properties of the ambient aerosols. The sparingly soluble organic coating controls hygroscopic growth, phase transitions, and microstructural rearrangement processes. The observed kinetic limitations can strongly influence the outcome of experiments performed on multi-second time scales, such as the commonly applied HTDMA (Hygroscopicity Tandem Differential Mobility Analyzer) and CCNC (Cloud Condensation Nuclei Counter) measurements.« less

Chemical composition, microstructure, and hygroscopic properties of aerosol particles at the Zotino Tall Tower Observatory (ZOTTO), Siberia, during a summer campaign

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mikhailov, E. F.; Mironov, G. N.; Pöhlker, C.

In this study we describe the hygroscopic properties of accumulation- and coarse-mode aerosol particles sampled at the Zotino Tall Tower Observatory (ZOTTO) in Central Siberia (61° N; 89° E) from 16 to 21 June 2013. The hygroscopic growth measurements were supplemented with chemical analyses of the samples, including inorganic ions and organic/elemental carbon. In addition, the microstructure and chemical composition of aerosol particles were analyzed by X-ray micro-spectroscopy (STXM-NEXAFS) and transmission electron microscopy (TEM). A mass closure analysis indicates that organic carbon accounted for 61 and 38% of PM in the accumulation mode and coarse mode, respectively. The water solublemore » fraction of organic matter was estimated to be 52 and 8% of PM in these modes. Sulfate, predominantly in the form of ammoniated sulfate, was the dominant inorganic component in both size modes: ~ 34% in the accumulation vs. ~ 47% in the coarse mode. The hygroscopic growth measurements were conducted with a filter-based differential hygroscopicity analyzer (FDHA) over the range of 5–99.4% RH in the hydration and dehydration operation modes. The FDHA study indicates that both accumulation and coarse modes exhibit pronounced water uptake approximately at the same RH, starting at ~ 70%, while efflorescence occurred at different humidities, i.e., at ~ 35% RH for submicron particles vs. ~ 50% RH for supermicron particles. This ~ 15% RH difference was attributed to higher content of organic material in the submicron particles, which suppresses water release in the dehydration experiments. The kappa mass interaction model (KIM) was applied to characterize and parameterize non-ideal solution behavior and concentration-dependent water uptake by atmospheric aerosol samples in the 5–99.4% RH range. Based on KIM, the volume-based hygroscopicity parameter, κ v, was calculated. The κ v, ws value related to the water soluble (ws) fraction was estimated to be ~ 0.15 for the accumulation mode and ~ 0.36 for the coarse mode, respectively. The obtained κ v, ws for the accumulation mode is in good agreement with earlier data reported for remote sites in the Amazon rain forest (κ v ≈ 0.15) and a Colorado boreal forest (κ v ≈ 0.16). We used the Zdanovskii–Stokes–Robinson (ZSR) mixing rule to predict the chemical composition dependent hygroscopicity, κ v, p. The obtained κ v, p values overestimate the experimental FDHA-KIM-derived κ v, ws by factors of 1.8 and 1.5 for the accumulation and coarse modes, respectively. This divergence can be partly explained by incomplete dissolution of the hygroscopic inorganic compounds resulting from kinetic limitations due to a sparingly soluble organic coating. The TEM and STXM-NEXAFS results indicate that aged submicron (>300 nm) and supermicron aerosol particles possess core-shell structures with an inorganic core, and are enriched in organic carbon at the mixed particle surface. The direct FDHA kinetic studies provide a bulk diffusion coefficient of water of ~ 10 −12 cm 2 s −1 indicating a semi-solid state of the organic-rich phase leading to kinetic limitations of water uptake and release during hydration and dehydration cycles. Overall the present ZOTTO data set, obtained in the growing season, has revealed a strong influence of organic carbon on the hygroscopic properties of the ambient aerosols. The sparingly soluble organic coating controls hygroscopic growth, phase transitions, and microstructural rearrangement processes. The observed kinetic limitations can strongly influence the outcome of experiments performed on multi-second time scales, such as the commonly applied HTDMA (Hygroscopicity Tandem Differential Mobility Analyzer) and CCNC (Cloud Condensation Nuclei Counter) measurements.« less

Chemical composition, microstructure, and hygroscopic properties of aerosol particles at the Zotino Tall Tower Observatory (ZOTTO), Siberia, during a summer campaign

NASA Astrophysics Data System (ADS)

Mikhailov, E. F.; Mironov, G. N.; Pöhlker, C.; Chi, X.; Krüger, M. L.; Shiraiwa, M.; Förster, J.-D.; Pöschl, U.; Vlasenko, S. S.; Ryshkevich, T. I.; Weigand, M.; Kilcoyne, A. L. D.; Andreae, M. O.

2015-03-01

In this study we describe the hygroscopic properties of accumulation- and coarse-mode aerosol particles sampled at the Zotino Tall Tower Observatory (ZOTTO) in Central Siberia (61° N; 89° E) from 16 to 21 June 2013. The hygroscopic growth measurements were supplemented with chemical analyses of the samples, including inorganic ions and organic/elemental carbon. In addition, the microstructure and chemical composition of aerosol particles were analyzed by X-ray micro-spectroscopy (STXM-NEXAFS) and transmission electron microscopy (TEM). A mass closure analysis indicates that organic carbon accounted for 61 and 38% of PM in the accumulation mode and coarse mode, respectively. The water soluble fraction of organic matter was estimated to be 52 and 8% of PM in these modes. Sulfate, predominantly in the form of ammoniated sulfate, was the dominant inorganic component in both size modes: ∼34% in the accumulation vs. ∼47% in the coarse mode. The hygroscopic growth measurements were conducted with a filter-based differential hygroscopicity analyzer (FDHA) over the range of 5-99.4% RH in the hydration and dehydration operation modes. The FDHA study indicates that both accumulation and coarse modes exhibit pronounced water uptake approximately at the same RH, starting at ∼70%, while efflorescence occurred at different humidities, i.e., at ∼35% RH for submicron particles vs. ∼50% RH for supermicron particles. This ∼15% RH difference was attributed to higher content of organic material in the submicron particles, which suppresses water release in the dehydration experiments. The kappa mass interaction model (KIM) was applied to characterize and parameterize non-ideal solution behavior and concentration-dependent water uptake by atmospheric aerosol samples in the 5-99.4% RH range. Based on KIM, the volume-based hygroscopicity parameter, κv, was calculated. The κv, ws value related to the water soluble (ws) fraction was estimated to be ∼0.15 for the accumulation mode and ∼0.36 for the coarse mode, respectively. The obtained κv, ws for the accumulation mode is in good agreement with earlier data reported for remote sites in the Amazon rain forest (κv ≈ 0.15) and a Colorado boreal forest (κv ≈ 0.16). We used the Zdanovskii-Stokes-Robinson (ZSR) mixing rule to predict the chemical composition dependent hygroscopicity, κv, p. The obtained κv, p values overestimate the experimental FDHA-KIM-derived κv, ws by factors of 1.8 and 1.5 for the accumulation and coarse modes, respectively. This divergence can be partly explained by incomplete dissolution of the hygroscopic inorganic compounds resulting from kinetic limitations due to a sparingly soluble organic coating. The TEM and STXM-NEXAFS results indicate that aged submicron (>300 nm) and supermicron aerosol particles possess core-shell structures with an inorganic core, and are enriched in organic carbon at the mixed particle surface. The direct FDHA kinetic studies provide a bulk diffusion coefficient of water of ∼10-12 cm2 s-1 indicating a semi-solid state of the organic-rich phase leading to kinetic limitations of water uptake and release during hydration and dehydration cycles. Overall the present ZOTTO data set, obtained in the growing season, has revealed a strong influence of organic carbon on the hygroscopic properties of the ambient aerosols. The sparingly soluble organic coating controls hygroscopic growth, phase transitions, and microstructural rearrangement processes. The observed kinetic limitations can strongly influence the outcome of experiments performed on multi-second time scales, such as the commonly applied HTDMA (Hygroscopicity Tandem Differential Mobility Analyzer) and CCNC (Cloud Condensation Nuclei Counter) measurements.

Sea salt emission, transport and influence on size-segregated nitrate simulation: a case study in northwestern Europe by WRF-Chem

NASA Astrophysics Data System (ADS)

Chen, Ying; Cheng, Yafang; Ma, Nan; Wolke, Ralf; Nordmann, Stephan; Schüttauf, Stephanie; Ran, Liang; Wehner, Birgit; Birmili, Wolfram; Denier van der Gon, Hugo A. C.; Mu, Qing; Barthel, Stefan; Spindler, Gerald; Stieger, Bastian; Müller, Konrad; Zheng, Guang-Jie; Pöschl, Ulrich; Su, Hang; Wiedensohler, Alfred

2016-09-01

Sea salt aerosol (SSA) is one of the major components of primary aerosols and has significant impact on the formation of secondary inorganic particles mass on a global scale. In this study, the fully online coupled WRF-Chem model was utilized to evaluate the SSA emission scheme and its influence on the nitrate simulation in a case study in Europe during 10-20 September 2013. Meteorological conditions near the surface, wind pattern and thermal stratification structure were well reproduced by the model. Nonetheless, the coarse-mode (PM1 - 10) particle mass concentration was substantially overestimated due to the overestimation of SSA and nitrate. Compared to filter measurements at four EMEP stations (coastal stations: Bilthoven, Kollumerwaard and Vredepeel; inland station: Melpitz), the model overestimated SSA concentrations by a factor of 8-20. We found that this overestimation was mainly caused by overestimated SSA emissions over the North Sea during 16-20 September. Over the coastal regions, SSA was injected into the continental free troposphere through an "aloft bridge" (about 500 to 1000 m above the ground), a result of the different thermodynamic properties and planetary boundary layer (PBL) structure between continental and marine regions. The injected SSA was further transported inland and mixed downward to the surface through downdraft and PBL turbulence. This process extended the influence of SSA to a larger downwind region, leading, for example, to an overestimation of SSA at Melpitz, Germany, by a factor of ˜ 20. As a result, the nitrate partitioning fraction (ratio between particulate nitrate and the summation of particulate nitrate and gas-phase nitric acid) increased by about 20 % for the coarse-mode nitrate due to the overestimation of SSA at Melpitz. However, no significant difference in the partitioning fraction for the fine-mode nitrate was found. About 140 % overestimation of the coarse-mode nitrate resulted from the influence of SSA at Melpitz. In contrast, the overestimation of SSA inhibited the nitrate particle formation in the fine mode by about 20 % because of the increased consumption of precursor by coarse-mode nitrate formation.

Size-segregated sugar composition of transported dust aerosols from Middle-East over Delhi during March 2012

NASA Astrophysics Data System (ADS)

Kumar, S.; Aggarwal, S. G.; Fu, P. Q.; Kang, M.; Sarangi, B.; Sinha, D.; Kotnala, R. K.

2017-06-01

During March 20-22, 2012 Delhi experienced a massive dust-storm which originated in Middle-East. Size segregated sampling of these dust aerosols was performed using a nine staged Andersen sampler (5 sets of samples were collected including before dust-storm (BDS)), dust-storm day 1 to 3 (DS1 to DS3) and after dust storm (ADS). Sugars (mono and disaccharides, sugar-alcohols and anhydro-sugars) were determined using GC-MS technique. It was observed that on the onset of dust-storm, total suspended particulate matter (TSPM, sum of all stages) concentration in DS1 sample increased by > 2.5 folds compared to that of BDS samples. Interestingly, fine particulate matter (sum of stages with cutoff size < 2.1 μm) loading in DS1 also increased by > 2.5 folds as compared to that of BDS samples. Sugars analyzed in DS1 coarse mode (sum of stages with cutoff size > 2.1 μm) samples showed a considerable increase ( 1.7-2.8 folds) compared to that of other samples. It was further observed that mono-saccharides, disaccharides and sugar-alcohols concentrations were enhanced in giant (> 9.0 μm) particles in DS1 samples as compared to other samples. On the other hand, anhydro-sugars comprised 13-27% of sugars in coarse mode particles and were mostly found in fine mode constituting 66-85% of sugars in all the sample types. Trehalose showed an enhanced ( 2-4 folds) concentration in DS1 aerosol samples in both coarse (62.80 ng/m3) and fine (8.57 ng/m3) mode. This increase in Trehalose content in both coarse and fine mode suggests their origin to the transported desert dust and supports their candidature as an organic tracer for desert dust entrainments. Further, levoglucosan to mannosan (L/M) ratios which have been used to predict the type of biomass burning influences on aerosols are found to be size dependent in these samples. These ratios are higher for fine mode particles, hence should be used with caution while interpreting the sources using this tool.

Monthly and seasonal variations of aerosol optical properties and direct radiative forcing over Zanjan, Iran

NASA Astrophysics Data System (ADS)

Gharibzadeh, Maryam; Alam, Khan; Abedini, Yousefali; Bidokhti, Abbasali Aliakbari; Masoumi, Amir

2017-11-01

Aerosol optical properties and radiative forcing over Zanjan in northwest of Iran has been analyzed during 2010-2013. The aerosol optical and radiative properties are less studied over Zanjan, and therefore, require a careful and in depth analysis. The optical properties like Aerosol Optical Depth (AOD), Ångström Exponent (AE), ASYmmetry parameter (ASY), Single Scattering Albedo (SSA), and Aerosol Volume Size Distribution (AVSD) have been evaluated using the ground-based AErosol RObotic NETwork (AERONET) data. Higher AOD while relatively lower AE were observed in the spring and summer, which showed the presence of coarse mode particles in these seasons. An obvious increase of coarse mode particles in AVSD distribution, as well as a higher value of SSA represented considerable addition of coarse mode particles like dust into the atmosphere of Zanjan in these two seasons. Increase in AE, while a decrease in AOD was detected in the winter and fall. The presence of fine particles indicates the dominance of particles like urban-industrial aerosols from local sources especially in the winter. The Santa Barbara DISORT Atmospheric Radiative Transfer (SBDART) model was utilized to calculate the Aerosol Radiative Forcing (ARF) at the Top of the Atmosphere (TOA), earth's surface and within the atmosphere. The annual averaged ARF values were -13.47 W m-2 and -36.1 W m-2 at the TOA and earth's surface, respectively, which indicate a significant cooling effect. Likewise, the ARF efficiencies at the TOA and earth's surface were -65.08 W m-2 and -158.43 W m-2, respectively. The annual mean atmospheric ARF and heating rate within the atmosphere were 22.63 W m-2 and 0.27 Kday-1 respectively, represented the warming effect within the atmosphere. Finally, a good agreement was found between AERONET retrieved ARF and SBDART simulated ARF.

Texture evolution during thermomechanical processing in rare earth free magnesium alloys

NASA Astrophysics Data System (ADS)

Miller, Victoria Mayne

The use of wrought magnesium alloys is highly desirable for a wide range of applications where low component weight is desirable due to the high specific strength and stiffness the alloys can achieve. However, the implementation of wrought magnesium has been hindered by the limited room temperature formability which typically results from deformation processing. This work identifies opportunities for texture modification during thermomechanical processing of conventional (rare earth free) magnesium alloys via a combination of experimental investigation and polycrystal plasticity simulations. During deformation, it is observed that a homogeneous distribution of coarse intermetallic particles efficiently weakens deformation texture at all strain levels, while a highly inhomogeneous particle distribution is only effective at high strains. The particle deformation effects are complemented by the addition of alkaline earth solute, which modifies the relative deformation mode activity. During recrystallization, grains with basal orientations recrystallize more readily than off-basal grains, despite similar levels of internal misorientation. Dislocation substructure investigations revealed that this is a result of enhanced nucleation in the basal grains due to the dominance of prismatic slip. This dissertation identifies avenues to enhance the potential formability of magnesium alloys during thermomechanical processing by minimizing the evolved texture strength. The following are the identified key aspects of microstructural control: -Maintaining a fine grain size, likely via Zener pinning, to favorably modify deformation mode activity and homogenize deformation. -Developing a coarse, homogeneously distributed population of coarse intermetallic particles to promote a diffuse deformation texture. -Minimizing the activity of prismatic slip to retard the recrystallization of grains with basal orientations, allowing the development of a more diffuse recrystallization texture.

Evaluation of multisectional and two-section particulate matter photochemical grid models in the Western United States.

PubMed

Morris, Ralph; Koo, Bonyoung; Yarwood, Greg

2005-11-01

Version 4.10s of the comprehensive air-quality model with extensions (CAMx) photochemical grid model has been developed, which includes two options for representing particulate matter (PM) size distribution: (1) a two-section representation that consists of fine (PM2.5) and coarse (PM2.5-10) modes that has no interactions between the sections and assumes all of the secondary PM is fine; and (2) a multisectional representation that divides the PM size distribution into N sections (e.g., N = 10) and simulates the mass transfer between sections because of coagulation, accumulation, evaporation, and other processes. The model was applied to Southern California using the two-section and multisection representation of PM size distribution, and we found that allowing secondary PM to grow into the coarse mode had a substantial effect on PM concentration estimates. CAMx was then applied to the Western United States for the 1996 annual period with a 36-km grid resolution using both the two-section and multisection PM representation. The Community Multiscale Air Quality (CMAQ) and Regional Modeling for Aerosol and Deposition (REMSAD) models were also applied to the 1996 annual period. Similar model performance was exhibited by the four models across the Interagency Monitoring of Protected Visual Environments (IMPROVE) and Clean Air Status and Trends Network monitoring networks. All four of the models exhibited fairly low annual bias for secondary PM sulfate and nitrate but with a winter overestimation and summer underestimation bias. The CAMx multisectional model estimated that coarse mode secondary sulfate and nitrate typically contribute <10% of the total sulfate and nitrate when averaged across the more rural IMPROVE monitoring network.

Composition and Sources of Fine and Coarse Particles Collected during 2002–2010 in Boston, MA

PubMed Central

Masri, Shahir; Kang, Choong-Min; Koutrakis, Petros

2016-01-01

Identifying the sources, composition, and temporal variability of fine (PM2.5) and coarse (PM2.5-10) particles is a crucial component in understanding PM toxicity and establishing proper PM regulations. In this study, a Harvard Impactor was used to collect daily integrated fine and coarse particle samples every third day for nine years at a single site in Boston, MA. A total of 1,960 filters were analyzed for elements, black carbon (BC), and total PM mass. Positive Matrix Factorization (PMF) was used to identify source types and quantify their contributions to ambient PM2.5 and PM2.5-10. BC and 17 elements were identified as the main constituents in our samples. Results showed that BC, S, and Pb were associated exclusively with the fine particle mode, while 84% of V and 79% of Ni were associated with this mode. Elements mostly found in the coarse mode, over 80%, included Ca, Mn (road dust), and Cl (sea salt). PMF identified six source types for PM2.5 and three source types for PM2.5-10. Source types for PM2.5 included regional pollution, motor vehicles, sea salt, crustal/road dust, oil combustion, and wood burning. Regional pollution contributed the most, accounting for 48% of total PM2.5 mass, followed by motor vehicles (21%) and wood burning (19%). Source types for PM2.5-10 included crustal/road dust (62%), motor vehicles (22%), and sea salt (16%). A linear decrease in PM concentrations with time was observed for both fine (−5.2%/yr) and coarse (−3.6%/yr) particles. The fine-mode trend was mostly related to oil combustion and regional pollution contributions. Average PM2.5 concentrations peaked in summer (10.4 μg/m3) while PM2.5-10 concentrations were lower and demonstrated little seasonal variability. The findings of this study show that PM25 is decreasing more sharply than PM2.5-10 over time. This suggests the increasing importance of PM2.5-10 and traffic-related sources for PM exposure and future policies. PMID:25947125

Balloon borne measurements of aerosol and cloud particles over Japan during PACDEX

NASA Astrophysics Data System (ADS)

Sakai, T.; Orikasa, N.; Nagai, T.; Murakami, M.; Tajiri, T.; Saito, A.; Yamashita, K.

2007-12-01

This paper presents the preliminary result of the balloon borne measurements of the aerosol and cloud microphysical properties over Tsukuba (36.1°N, 140.1°E), Japan, on 10 and 22 May 2007. The purpose of the measurement is to study the influence of Asian mineral dust on ice clouds formation in the middle and upper troposphere. The balloon measured the vertical distributions of aerosol number size distribution (0.13 to 3.9 μm in threshold radius, 8 sizes) by use of the optical particle counter, cloud size (10 μ m to 5 mm in the longest dimension), shape, and number concentration by use of the hydrometer videosonde, humidity by use of SnowWhite hygrometer, and temperature and pressure by use of Meisei RS-01G radiosonde between altitudes of 0 and 16 km. The aerosol size distribution showed bimodal distribution with mode radii of <0.13 μm (fine mode) and about 0.8 μm (coarse mode) over the troposphere (0-13.5 km in altitude). The number concentrations ranged from 150 to 1 cm-3 in the fine mode and from 3 to 0.1 cm-3 in the coarse mode. High depolarization ratio (>10%) obtained from the ground-based Raman lidar measurement revealed the presence of nonspherical dust in the coarse mode. Columnar, bullet-like, and irregular ice crystals with 10-400 μm in size were detected between altitudes of 8 and 13 km on 10 May and 10 and 13 km on 22 May. The maximum crystal concentration was 0.15 cm-3. We discuss the possibility of the formation of the ice cloud from the dust based on the result of the measurements.

Kawase & McDermott revisited with a proper ocean model.

NASA Astrophysics Data System (ADS)

Jochum, Markus; Poulsen, Mads; Nuterman, Roman

2017-04-01

A suite of experiments with global ocean models is used to test the hypothesis that Southern Ocean (SO) winds can modify the strength of the Atlantic Meridional Overturning Circulation (AMOC). It is found that for 3 and 1 degree resolution models the results are consistent with Toggweiler & Samuels (1995): stronger SO winds lead to a slight increase of the AMOC. In the simulations with 1/10 degree resolution, however, stronger SO winds weaken the AMOC. We show that these different outcomes are determined by the models' representation of topographic Rossby and Kelvin waves. Consistent with previous literature based on theory and idealized models, first baroclinic waves are slower in the coarse resolution models, but still manage to establish a pattern of global response that is similar to the one in the eddy-permitting model. Because of its different stratification, however, the Atlantic signal is transmitted by higher baroclinic modes. In the coarse resolution model these higher modes are dissipated before they reach 30N, whereas in the eddy-permitting model they reach the subpolar gyre undiminished. This inability of non-eddy-permitting ocean models to represent planetary waves with higher baroclinic modes casts doubt on the ability of climate models to represent non-local effects of climate change. Ideas on how to overcome these difficulties will be discussed.

Size distribution of ions in atmospheric aerosols

NASA Astrophysics Data System (ADS)

Krivácsy, Z.; Molnár, Á.

The aim of this paper is to present data about the concentration and size distribution of ions in atmospheric aerosol under slightly polluted urban conditions in Hungary. Concentration of inorganic cations (ammonium, sodium, potassium, calcium, magnesium), inorganic anions (sulfate, nitrate, chloride, carbonate) and organic acids (oxalic, malonic, succinic, formic and acetic acid) for 8 particle size range between 0.0625 and 16 μm were determined. As was the case for ammonium, sulfate and nitrate, the organic acids were mostly found in the fine particle size range. Potassium and chloride were rather uniformly distributed between fine and coarse particles. Sodium, calcium, magnesium and carbonate were practically observed in the coarse mode. The results obtained for the summer and the winter half-year were also compared. The mass concentrations were recalculated in equivalents, and the ion balance was found to be reasonable in most cases. Measurement of the pH of the aerosol extracts indicates that the aerosol is acidic in the fine mode, but alkaline in the coarse particle size range.

A strategy for characterized aerosol-sampling transport efficiency.

NASA Astrophysics Data System (ADS)

Schwarz, J. P.

2017-12-01

A fundamental concern when sampling aerosol in the laboratory or in situ, on the ground or (especially) from aircraft, is characterizing transport losses due to particles contacting the walls of tubing used for transport. Depending on the size range of the aerosol, different mechanisms dominate these losses: diffusion for the ultra-fine, and inertial and gravitational settling losses for the coarse mode. In the coarse mode, losses become intractable very quickly with increasing particle size above 5 µm diameter. Here we present these issues, with a concept approach to reducing aerosol losses via strategic dilution with porous tubing including results of laboratory testing of a prototype. We infer the potential value of this approach to atmospheric aerosol sampling.

Analog neural network control method proposed for use in a backup satellite control mode

DOE Office of Scientific and Technical Information (OSTI.GOV)

Frigo, J.R.; Tilden, M.W.

1998-03-01

The authors propose to use an analog neural network controller implemented in hardware, independent of the active control system, for use in a satellite backup control mode. The controller uses coarse sun sensor inputs. The field of view of the sensors activate the neural controller, creating an analog dead band with respect to the direction of the sun on each axis. This network controls the orientation of the vehicle toward the sunlight to ensure adequate power for the system. The attitude of the spacecraft is stabilized with respect to the ambient magnetic field on orbit. This paper develops a modelmore » of the controller using real-time coarse sun sensor data and a dynamic model of a prototype system based on a satellite system. The simulation results and the feasibility of this control method for use in a satellite backup control mode are discussed.« less

Investigation of the relative fine and coarse mode aerosol loadings and properties in the Southern Arabian Gulf region

NASA Astrophysics Data System (ADS)

Kaku, Kathleen C.; Reid, Jeffrey S.; Reid, Elizabeth A.; Ross-Langerman, Kristy; Piketh, Stuart; Cliff, Steven; Al Mandoos, Abdulla; Broccardo, Stephen; Zhao, Yongjing; Zhang, Jianglong; Perry, Kevin D.

2016-03-01

The aerosol chemistry environment of the Arabian Gulf region is extraordinarily complex, with high concentrations of dust aerosols from surrounding deserts mixed with anthropogenic aerosols originating from a large petrochemical industry and pockets of highly urbanized areas. Despite the high levels of aerosols experienced by this region, little research has been done to explore the chemical composition of both the anthropogenic and mineral dust portion of the aerosol burden. The intensive portion of the United Arab Emirates Unified Aerosol Experiment (UAE2), conducted during August and September 2004 was designed in part to resolve the aerosol chemistry through the use of multiple size-segregated aerosol samplers. The coarse mode mass (derived by subtracting the PM2.5 aerosol mass from the PM10 mass) is largely dust at 76% ± 7% of the total coarse mode mass, but is significantly impacted by anthropogenic pollution, primarily sulfate and nitrate. The PM2.5 aerosol mass also contains a large dust burden, at 38% ± 26%, but the anthropogenic component dominates. The total aerosol burden has significant impact not only on the atmosphere, but also the local population, as the air quality levels for both the PM10 and PM2.5 aerosol masses reached unhealthy levels for 24% of the days sampled.

EFFECTIVENESS OF THE PM 2.5 FEDERAL REFERENCE METHOD TO DIFFERENTIATE FINE AND COARSE MODE AEROSOL (A RESPONSE TO SECTION 6102(E) OF THE TRANSPORTATION EQUITY ACT FOR THE 21ST CENTURY

EPA Science Inventory

This report is submitted in response to Section 6102(e) of the Transportation Equity Act for the 21st Century, which states:

"The Administrator shall conduct a field study of the ability of the PM2.5 Federal Reference Method to differentiate those particles that ...

Characterization of coarse bainite transformation in low carbon steel during simulated welding thermal cycles

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lan, Liangyun, E-mail: lanly@me.neu.edu.cn; State Key Laboratory of Rolling Technology and Automation, Northeastern University, Shenyang 110819; Kong, Xiangwei

2015-07-15

Coarse austenite to bainite transformation in low carbon steel under simulated welding thermal cycles was morphologically and crystallographically characterized by means of optical microscope, transmission electron microscope and electron backscattered diffraction technology. The results showed that the main microstructure changes from a mixture of lath martensite and bainitic ferrite to granular bainite with the increase in cooling time. The width of bainitic laths also increases gradually with the cooling time. For a welding thermal cycle with relatively short cooling time (e.g. t{sub 8/5} is 30 s), the main mode of variant grouping at the scale of individual prior austenite grainsmore » changes from Bain grouping to close-packed plane grouping with the progress of phase transformation, which results in inhomogeneous distribution of high angle boundaries. As the cooling time is increased, the Bain grouping of variants becomes predominant mode, which enlarges the effective grain size of product phase. - Highlights: • Main microstructure changes and the width of lath structure increases with cooling time. • Variant grouping changes from Bain zone to close-packed plane grouping with the transformation. • The change of variant grouping results in uneven distribution of high angle grain boundary. • Bain grouping is main mode for large heat input, which lowers the density of high angle boundary.« less

Dicarboxylic acids, oxoacids, benzoic acid, α-dicarbonyls, WSOC, OC, and ions in spring aerosols from Okinawa Island in the western North Pacific Rim: size distributions and formation processes

NASA Astrophysics Data System (ADS)

Deshmukh, Dhananjay K.; Kawamura, Kimitaka; Lazaar, Manuel; Kunwar, Bhagawati; Boreddy, Suresh K. R.

2016-04-01

Size-segregated aerosols (nine stages from < 0.43 to > 11.3 µm in diameter) were collected at Cape Hedo, Okinawa, in spring 2008 and analyzed for water-soluble diacids (C2-C12), ω-oxoacids (ωC2-ωC9), pyruvic acid, benzoic acid, and α-dicarbonyls (C2-C3) as well as water-soluble organic carbon (WSOC), organic carbon (OC), and major ions (Na+, NH4+, K+, Mg2+, Ca2+, Cl-, NO3-, SO42-, and MSA-). In all the size-segregated aerosols, oxalic acid (C2) was found to be the most abundant species, followed by malonic and succinic acids, whereas glyoxylic acid (ωC2) was the dominant oxoacid and glyoxal (Gly) was more abundant than methylglyoxal. Diacids (C2-C5), ωC2, and Gly as well as WSOC and OC peaked at fine mode (0.65-1.1 µm) whereas azelaic (C9) and 9-oxononanoic (ωC9) acids peaked at coarse mode (3.3-4.7 µm). Sulfate and ammonium were enriched in fine mode, whereas sodium and chloride were in coarse mode. Strong correlations of C2-C5 diacids, ωC2 and Gly with sulfate were observed in fine mode (r = 0.86-0.99), indicating a commonality in their secondary formation. Their significant correlations with liquid water content in fine mode (r = 0.82-0.95) further suggest an importance of the aqueous-phase production in Okinawa aerosols. They may also have been directly emitted from biomass burning in fine mode as supported by strong correlations with potassium (r = 0.85-0.96), which is a tracer of biomass burning. Bimodal size distributions of longer-chain diacid (C9) and oxoacid (ωC9) with a major peak in the coarse mode suggest that they were emitted from the sea surface microlayers and/or produced by heterogeneous oxidation of biogenic unsaturated fatty acids on sea salt particles.

Fine and coarse modes of dicarboxylic acids in the Arctic aerosols collected during the Polar Sunrise Experiment 1997

NASA Astrophysics Data System (ADS)

Narukawa, M.; Kawamura, K.; Anlauf, K. G.; Barrie, L. A.

2003-09-01

Fine (<1 μm) and coarse (>1 μm) aerosol particles were collected at Alert, Canada (82°27'N, 62°30'W), during the Arctic spring as part of the Polar Sunrise Experiment 1997 and were analyzed for low molecular weight dicarboxylic acids (C2-C11) using gas chromatography with flame ionization detector (GC-FID) and GC/mass spectrometry (GC/MS). More than 80% of total diacids were detected in the fine fraction, suggesting the production by gas-to-particle conversion in the Arctic. In both fractions, oxalic acid was the dominant diacid species followed by succinic and malonic acids. Shorter chain diacids (C2-C5) showed the concentration maximum on 5-7 April; however, longer chain diacids (

A re-assessment of aerosol size distributions from Masaya volcano (Nicaragua)

NASA Astrophysics Data System (ADS)

Martin, R. S.; Ilyinskaya, E.; Sawyer, G. M.; Tsanev, V. I.; Oppenheimer, C.

2011-01-01

Cascade impactors were used to sample volcanic aerosol from Masaya (Nicaragua) in 2007, 2009 and 2010. Differences were found in the size distributions of volcanic aerosol between these recent campaigns and with a campaign in 2001: (1) SO 42- showed modes in both the fine (<1 μm; with low Na +/K +) and coarse (>1 μm; with high Na +/K +) fractions in all of the recent campaigns despite being unimodal in 2001 (<1 μm); (2) The modal diameters for SO 42- roughly doubled in 2009, compared to 2007 or 2010; (3) total Cl - was depleted in volcanic aerosol compared to background aerosol in all the more recent campaigns but was enriched in 2001. Other aspects of the volcanic aerosol appear to be persistent, such as a fine SO 42--H +-Na +-K + mode, which was the most abundant mode in all campaigns, and a coarse Cl --F --Mg 2+-Ca 2+ mode of lower abundance. Water uptake and speciation in the aerosol were investigated using the equilibrium model, ISORROPIA II. Results show that the coarse SO 42--rich mode deliquesces at lower relative humidity (40% RH) than the fine SO 42--rich mode (50% RH) due to increased Na +/K + in the former. The aerosol was predicted to be dry at ambient relative humidity in 2009 and dominated by NaHSO 4, KHSO 4, CaSO 4 and MgSO 4. In contrast, model results predict a liquid aerosol at ambient relative humidity in 2010. These results indicate that aerosol emissions from a volcano can vary in ionic composition and even more so in physical speciation (i.e., salts or solutions). These observations are set against a near-constant magmatic gas composition at Masaya, which highlights the significance of atmospheric and dynamic factors in the formation of volcanic aerosols.

The Effect of Boron on the Low Cycle Fatigue Behavior of Disk Alloy KM4

NASA Technical Reports Server (NTRS)

Gabb, Timothy; Gayda, John; Sweeney, Joseph

2000-01-01

The durability of powder metallurgy nickel base superalloys employed as compressor and turbine disks is often limited by low cycle fatigue (LCF) crack initiation and crack growth from highly stressed surface locations (corners, holes, etc.). Crack growth induced by dwells at high stresses during aerospace engine operation can be particularly severe. Supersolvus solution heat treatments can be used to produce coarse grain sizes approaching ASTM 6 for improved resistance to dwell fatigue crack growth. However, the coarse grain sizes reduce yield strength, which can lower LCF initiation life. These high temperature heat treatments also can encourage pores to form. In the advanced General Electric disk superalloy KM4, such pores can initiate fatigue cracks that limit LCF initiation life. Hot isostatic pressing (HIP) during the supersolvus solution heat treatment has been shown to improve LCF initiation life in KM4, as the HIP pressure minimizes formation of the pores. Reduction of boron levels in KM4 has also been shown to increase LCF initiation life after a conventional supersolvus heat treatment, again possibly due to effects on the formation tendencies of these pores. However, the effects of reduced boron levels on microstructure, pore characteristics, and LCF failure modes in KM4 still need to be fully quantified. The objective of this study was to determine the effect of boron level on the microstructure, porosity, LCF behavior, and failure modes of supersolvus heat treated KM4.

A Coarse Alignment Method Based on Digital Filters and Reconstructed Observation Vectors

PubMed Central

Xu, Xiang; Xu, Xiaosu; Zhang, Tao; Li, Yao; Wang, Zhicheng

2017-01-01

In this paper, a coarse alignment method based on apparent gravitational motion is proposed. Due to the interference of the complex situations, the true observation vectors, which are calculated by the apparent gravity, are contaminated. The sources of the interference are analyzed in detail, and then a low-pass digital filter is designed in this paper for eliminating the high-frequency noise of the measurement observation vectors. To extract the effective observation vectors from the inertial sensors’ outputs, a parameter recognition and vector reconstruction method are designed, where an adaptive Kalman filter is employed to estimate the unknown parameters. Furthermore, a robust filter, which is based on Huber’s M-estimation theory, is developed for addressing the outliers of the measurement observation vectors due to the maneuver of the vehicle. A comprehensive experiment, which contains a simulation test and physical test, is designed to verify the performance of the proposed method, and the results show that the proposed method is equivalent to the popular apparent velocity method in swaying mode, but it is superior to the current methods while in moving mode when the strapdown inertial navigation system (SINS) is under entirely self-contained conditions. PMID:28353682

A new algorithm for construction of coarse-grained sites of large biomolecules.

PubMed

Li, Min; Zhang, John Z H; Xia, Fei

2016-04-05

The development of coarse-grained (CG) models for large biomolecules remains a challenge in multiscale simulations, including a rigorous definition of CG representations for them. In this work, we proposed a new stepwise optimization imposed with the boundary-constraint (SOBC) algorithm to construct the CG sites of large biomolecules, based on the s cheme of essential dynamics CG. By means of SOBC, we can rigorously derive the CG representations of biomolecules with less computational cost. The SOBC is particularly efficient for the CG definition of large systems with thousands of residues. The resulted CG sites can be parameterized as a CG model using the normal mode analysis based fluctuation matching method. Through normal mode analysis, the obtained modes of CG model can accurately reflect the functionally related slow motions of biomolecules. The SOBC algorithm can be used for the construction of CG sites of large biomolecules such as F-actin and for the study of mechanical properties of biomaterials. © 2015 Wiley Periodicals, Inc.

A boundary condition for layer to level ocean model interaction

NASA Astrophysics Data System (ADS)

Mask, A.; O'Brien, J.; Preller, R.

2003-04-01

A radiation boundary condition based on vertical normal modes is introduced to allow a physical transition between nested/coupled ocean models that are of differing vertical structure and/or differing physics. In this particular study, a fine resolution regional/coastal sigma-coordinate Naval Coastal Ocean Model (NCOM) has been successfully nested to a coarse resolution (in the horizontal and vertical) basin scale NCOM and a coarse resolution basin scale Navy Layered Ocean Model (NLOM). Both of these models were developed at the Naval Research Laboratory (NRL) at Stennis Space Center, Mississippi, USA. This new method, which decomposes the vertical structure of the models into barotropic and baroclinic modes, gives improved results in the coastal domain over Orlanski radiation boundary conditions for the test cases. The principle reason for the improvement is that each mode has the radiation boundary condition applied individually; therefore, the packet of information passing through the boundary is allowed to have multiple phase speeds instead of a single-phase speed. Allowing multiple phase speeds reduces boundary reflections, thus improving results.

The optical properties, physical properties and direct radiative forcing of urban columnar aerosols in the Yangtze River Delta, China

NASA Astrophysics Data System (ADS)

Zhuang, Bingliang; Wang, Tijian; Liu, Jane; Che, Huizheng; Han, Yong; Fu, Yu; Li, Shu; Xie, Min; Li, Mengmeng; Chen, Pulong; Chen, Huimin; Yang, Xiu-qun; Sun, Jianning

2018-02-01

The optical and physical properties as well as the direct radiative forcings (DRFs) of fractionated aerosols in the urban area of the western Yangtze River Delta (YRD) are investigated with measurements from a Cimel sun photometer combined with a radiation transfer model. Ground-based observations of aerosols have much higher temporal resolutions than satellite retrievals. An initial analysis reveals the characteristics of the optical properties of different types of fractionated aerosols in the western YRD. The total aerosols, mostly composed of scattering components (93.8 %), have mean optical depths of 0.65 at 550 nm and refractive index of 1.44 + 0.0084i at 440 nm. The fine aerosols are approximately four times more abundant and have very different compositions from coarse aerosols. The absorbing components account for only ˜ 4.6 % of fine aerosols and 15.5 % of coarse aerosols and have smaller sizes than the scattering aerosols within the same mode. Therefore, fine particles have stronger scattering than coarse ones, simultaneously reflecting the different size distributions between the absorbing and scattering aerosols. The relationships among the optical properties quantify the aerosol mixing and imply that approximately 15 and 27.5 % of the total occurrences result in dust- and black-carbon-dominating mixing aerosols, respectively, in the western YRD. Unlike the optical properties, the size distributions of aerosols in the western YRD are similar to those found at other sites over eastern China on a climatological scale, peaking at radii of 0.148 and 2.94 µm. However, further analysis reveals that the coarse-dominated particles can also lead to severe haze pollution over the YRD. Observation-based estimations indicate that both fine and coarse aerosols in the western YRD exert negative DRFs, and this is especially true for fine aerosols (-11.17 W m-2 at the top of atmosphere, TOA). A higher absorption fraction leads directly to the negative DRF being further offset for coarse aerosols (-0.33 W m-2) at the TOA. Similarly, the coarse-mode DRF contributes to only 13.3 % of the total scattering aerosols but > 33.7 % to the total absorbing aerosols. A sensitivity analysis states that aerosol DRFs are not highly sensitive to their profiles in clear-sky conditions. Most of the aerosol properties and DRFs have substantial seasonality in the western YRD. The results further reveal the contributions of each component of the different size particles to the total aerosol optical depths (AODs) and DRFs. Additionally, these results can be used to improve aerosol modelling performance and the modelling of aerosol effects in the eastern regions of China.

The potential of LIRIC to validate the vertical profiles of the aerosol mass concentration estimated by an air quality model

NASA Astrophysics Data System (ADS)

Siomos, Nikolaos; Filoglou, Maria; Poupkou, Anastasia; Liora, Natalia; Dimopoulos, Spyros; Melas, Dimitris; Chaikovsky, Anatoli; Balis, Dimitris

2015-04-01

Vertical profiles of the aerosol mass concentration derived by a retrieval algorithm that uses combined sunphotometer and LIDAR data (LIRIC) were used in order to validate the mass concentration profiles estimated by the air quality model CAMx. LIDAR and CIMEL measurements of the Laboratory of Atmospheric Physics of the Aristotle University of Thessaloniki were used for this validation.The aerosol mass concentration profiles of the fine and coarse mode derived by CAMx were compared with the respective profiles derived by the retrieval algorithm. For the coarse mode particles, forecasts of the Saharan dust transportation model BSC-DREAM8bV2 were also taken into account. Each of the retrieval algorithm's profiles were matched to the models' profile with the best agreement within a time window of four hours before and after the central measurement. OPAC, a software than can provide optical properties of aerosol mixtures, was also employed in order to calculate the angstrom exponent and the lidar ratio values for 355nm and 532nm for each of the model's profiles aiming in a comparison with the angstrom exponent and the lidar ratio values derived by the retrieval algorithm for each measurement. The comparisons between the fine mode aerosol concentration profiles resulted in a good agreement between CAMx and the retrieval algorithm, with the vertical mean bias error never exceeding 7 μgr/m3. Concerning the aerosol coarse mode concentration profiles both CAMx and BSC-DREAM8bV2 values are severely underestimated, although, in cases of Saharan dust transportation events there is an agreement between the profiles of BSC-DREAM8bV2 model and the retrieval algorithm.

Cryogenic scanning tunneling microscope with a magnetic coarse approach

NASA Astrophysics Data System (ADS)

Davydov, D. N.; Deltour, R.; Horii, N.; Timofeev, V. A.; Grokholski, A. S.

1993-11-01

A compact, rigid, and reliable cryogenic scanning tunneling microscope (CSTM) with a vertical electromagnetic coarse approach system was developed. This device can be used for topographic and local tunneling spectroscopy studies at liquid nitrogen and helium temperatures. Minimal step sizes of 28 nm for the electromagnetic translation device were achieved. The additional possibility of a coarse approach operation in the inertial slip-stick mode, without electromagnets, was successfully tested, making this STM compatible with external magnetic fields. A simple technique for characterizing the STM rigidity has been developed. Preliminary data, taken with this instrument are presented, demonstrating the achievement, at liquid helium temperature, of atomic resolution for topographic studies, and also the possibility of measuring simultaneously superconducting energy gap spectra.

Ash particulate formation from pulverized coal under oxy-fuel combustion conditions.

PubMed

Jia, Yunlu; Lighty, JoAnn S

2012-05-01

Aerosol particulates are generated by coal combustion. The amount and properties of aerosol particulates, specifically size distribution and composition, can be affected by combustion conditions. Understanding the formation of these particles is important for predicting emissions and understanding potential deposition. Oxy-fuel combustion conditions utilize an oxygen-enriched gas environment with CO(2). The high concentration of CO(2) is a result of recycle flue gas which is used to maintain temperature. A hypothesis is that high CO(2) concentration reduces the vaporization of refractory oxides from combustion. A high-temperature drop-tube furnace was used under different oxygen concentrations and CO(2) versus N(2) to study the effects of furnace temperature, coal type, and gas phase conditions on particulate formation. A scanning mobility particle sizer (SMPS) and aerodynamic particle sizer (APS) were utilized for particle size distributions ranging from 14.3 nm to 20 μm. In addition, particles were collected on a Berner low pressure impactor (BLPI) for elemental analysis using scanning electron microscopy and energy dispersive spectroscopy. Three particle size modes were seen: ultrafine (below 0.1 μm), fine (0.1 to 1.0 μm), and coarse (above 1 μm). Ultrafine mass concentrations were directly related to estimated particle temperature, increasing with increasing temperature. For high silicon and calcium coals, Utah Skyline and PRB, there was a secondary effect due to CO(2) and the hypothesized reaction. Illinois #6, a high sulfur coal, had the highest amount of ultrafine mass and most of the sulfur was concentrated in the ultrafine and fine modes. Fine and coarse mode mass concentrations did not show a temperature or CO(2) relationship. (The table of contents graphic and abstract graphic are adapted from ref 27.). © 2012 American Chemical Society

Spatial heterogeneities in aerosol size distribution over Bay of Bengal during Winter-ICARB Experiment

NASA Astrophysics Data System (ADS)

Sinha, P. R.; Manchanda, R. K.; Kaskaoutis, D. G.; Sreenivasan, S.; Krishna Moorthy, K.; Suresh Babu, S.

2011-09-01

This work examines the aerosol physical properties and size distribution measured in the Marine Atmospheric Boundary Layer (MABL) over entire Bay of Bengal (BoB) and Northern Indian Ocean (NIO) during the Winter Integrated Campaign on Aerosols, Gases and Radiation Budget (W-ICARB). The measurements were taken using the GRIMM optical particle counter from 27th December 2008 to 30th January 2009. The results show large spatial heterogeneities regarding both the total aerosol number concentrations ( N T) and the size distributions over BoB, which in turn indicates the variations in the source strength or advection from different regions. The aerosol number size distribution seems to be bi-modal in the 72% of the cases and can also be parameterized by uni-modal or by a combination of power-law and uni-modal distributions for the rest of the cases. The mode radius for accumulation and coarse-mode particles ranges from ˜0.1-0.2 μm and ˜0.6-0.8 μm, respectively. In the northern BoB and along the Indian coast, the aerosols are mainly of sub-micron size with effective radius ( Reff) ranging between 0.25 and 0.3 μm highlighting the strong anthropogenic influence, while in the open oceanic areas they are much higher (0.4-0.6 μm). It was also found that the sea-surface wind plays a considerable role in the super-micron number concentration, Reff and mode radius for coarse-mode aerosols. Using the relation between N T and columnar AOD from Terra and Aqua-MODIS we found that the majority of the aerosols are within the lower MABL, while in some areas vertical heterogeneities also exist.

Investigation of Grid Adaptation to Reduce Computational Efforts for a 2-D Hydrogen-Fueled Dual-Mode Scramjet

NASA Astrophysics Data System (ADS)

Foo, Kam Keong

A two-dimensional dual-mode scramjet flowpath is developed and evaluated using the ANSYS Fluent density-based flow solver with various computational grids. Results are obtained for fuel-off, fuel-on non-reacting, and fuel-on reacting cases at different equivalence ratios. A one-step global chemical kinetics hydrogen-air model is used in conjunction with the eddy-dissipation model. Coarse, medium and fine computational grids are used to evaluate grid sensitivity and to investigate a lack of grid independence. Different grid adaptation strategies are performed on the coarse grid in an attempt to emulate the solutions obtained from the finer grids. The goal of this study is to investigate the feasibility of using various mesh adaptation criteria to significantly decrease computational efforts for high-speed reacting flows.

The Use of a Gyroless Wheel-Tach Controller in SDO Safehold Mode

NASA Technical Reports Server (NTRS)

Bourkland, Kristin L.; Starin, Scott R.; Mangus, David J.; Starin, Scott (Technical Monitor)

2005-01-01

This paper describes the progression of the Safehold mode design on the Solar Dynamics Observatory satellite. Safehold uses coarse Sun sensors and reaction wheel tachometers to keep the spacecraft in a thermally safe and power-positive attitude. The control algorithm is described, and simulation results shown. Specific control issues arose when the spacecraft entered eclipse, and a description of the trade study which added gyroscopes to the mode is included. The paper concludes with the results from the linear and nonlinear stability analysis.

Coarse-grained representation of the quasi adiabatic propagator path integral for the treatment of non-Markovian long-time bath memory

NASA Astrophysics Data System (ADS)

Richter, Martin; Fingerhut, Benjamin P.

2017-06-01

The description of non-Markovian effects imposed by low frequency bath modes poses a persistent challenge for path integral based approaches like the iterative quasi-adiabatic propagator path integral (iQUAPI) method. We present a novel approximate method, termed mask assisted coarse graining of influence coefficients (MACGIC)-iQUAPI, that offers appealing computational savings due to substantial reduction of considered path segments for propagation. The method relies on an efficient path segment merging procedure via an intermediate coarse grained representation of Feynman-Vernon influence coefficients that exploits physical properties of system decoherence. The MACGIC-iQUAPI method allows us to access the regime of biological significant long-time bath memory on the order of hundred propagation time steps while retaining convergence to iQUAPI results. Numerical performance is demonstrated for a set of benchmark problems that cover bath assisted long range electron transfer, the transition from coherent to incoherent dynamics in a prototypical molecular dimer and excitation energy transfer in a 24-state model of the Fenna-Matthews-Olson trimer complex where in all cases excellent agreement with numerically exact reference data is obtained.

The effect of mitigation measures on size distributed mass concentrations of atmospheric particles and black carbon concentrations during the Olympic Summer Games 2008 in Beijing.

PubMed

Schleicher, Nina; Norra, Stefan; Dietze, Volker; Yu, Yang; Fricker, Mathieu; Kaminski, Uwe; Chen, Yuan; Cen, Kuang

2011-12-15

The period of the 2008 Olympic Summer Games in Beijing can be considered as a unique opportunity to study the influences of emission reduction measures on air quality improvement. Within this study atmospheric particles of different size classes (2.5 to 80 μm) were investigated before, during, and after the Olympic Games period in order to observe and assess the success of short-term measures to mitigate extreme urban aerosol pollution and also to investigate, which particle size classes were reduced most effectively. Furthermore, black carbon (BC) concentrations in fine particles (PM(2.5)) during the source control period were compared to those of the previous years in order to investigate the decrease of combustion-derived aerosols. It is shown that besides the implemented mitigation measures precipitation decisively contributed to a considerable decrease of particulate air pollution in Beijing compared to the respective concentrations during the time directly before and after the Olympic Games, and also compared to average August concentrations during the previous years and the following year 2009. Particles of the fine fraction of the coarse mode (2.5 to 5 μm), which have a residence time in the order of several days and which, therefore, are typically transported over long distances from outside of Beijing, were less efficiently reduced than coarser particles. This indicates that long-range transport of atmospheric particles is difficult to control and that presumably the established mitigation area was not large enough to also reduce the fine fraction of the coarse mode more efficiently. Furthermore, the study showed that coarse geogenic particles, which originated to a high percentage from construction sites and resuspension processes due to traffic seemed to be reduced most efficiently during the Olympic Games period. Copyright © 2011 Elsevier B.V. All rights reserved.

40 CFR Table F-3 to Subpart F of... - Critical Parameters of Idealized Ambient Particle Size Distributions

Code of Federal Regulations, 2010 CFR

2010-07-01

... Ambient Particle Size Distributions F Table F-3 to Subpart F of Part 53 Protection of Environment... Ambient Particle Size Distributions Idealized Distribution Fine Particle Mode MMD (µm) Geo. Std. Dev. Conc. (µg/m3) Coarse Particle Mode MMD (µm) Geo. Std. Dev. Conc. (µg/m3) PM2.5/PM10 Ratio FRM Sampler...

40 CFR Table F-3 to Subpart F of... - Critical Parameters of Idealized Ambient Particle Size Distributions

Code of Federal Regulations, 2013 CFR

2013-07-01

... Ambient Particle Size Distributions F Table F-3 to Subpart F of Part 53 Protection of Environment... Ambient Particle Size Distributions Idealized Distribution Fine Particle Mode MMD (µm) Geo. Std. Dev. Conc. (µg/m 3) Coarse Particle Mode MMD (µm) Geo. Std. Dev. Conc. (µg/m 3) PM 2.5/PM 10 Ratio FRM Sampler...

40 CFR Table F-3 to Subpart F of... - Critical Parameters of Idealized Ambient Particle Size Distributions

Code of Federal Regulations, 2012 CFR

2012-07-01

... Ambient Particle Size Distributions F Table F-3 to Subpart F of Part 53 Protection of Environment... Ambient Particle Size Distributions Idealized Distribution Fine Particle Mode MMD (µm) Geo. Std. Dev. Conc. (µg/m3) Coarse Particle Mode MMD (µm) Geo. Std. Dev. Conc. (µg/m3) PM2.5/PM10 Ratio FRM Sampler...

40 CFR Table F-3 to Subpart F of... - Critical Parameters of Idealized Ambient Particle Size Distributions

Code of Federal Regulations, 2011 CFR

2011-07-01

... Ambient Particle Size Distributions F Table F-3 to Subpart F of Part 53 Protection of Environment... Ambient Particle Size Distributions Idealized Distribution Fine Particle Mode MMD (µm) Geo. Std. Dev. Conc. (µg/m3) Coarse Particle Mode MMD (µm) Geo. Std. Dev. Conc. (µg/m3) PM2.5/PM10 Ratio FRM Sampler...

40 CFR Table F-3 to Subpart F of... - Critical Parameters of Idealized Ambient Particle Size Distributions

Code of Federal Regulations, 2014 CFR

2014-07-01

... Ambient Particle Size Distributions F Table F-3 to Subpart F of Part 53 Protection of Environment... Ambient Particle Size Distributions Idealized Distribution Fine Particle Mode MMD (µm) Geo. Std. Dev. Conc. (µg/m3) Coarse Particle Mode MMD (µm) Geo. Std. Dev. Conc. (µg/m3) PM 2.5/PM 10 Ratio FRM Sampler...

Optical techniques: using coarse and detailed scans for the preventive acquisition of fingerprints with chromatic white-light sensors

NASA Astrophysics Data System (ADS)

Hildebrandt, Mario; Dittmann, Jana; Vielhauer, Claus; Leich, Marcus

2011-11-01

The preventive application of automated latent fingerprint acquisition devices can enhance the Homeland Defence, e.g. by improving the border security. Here, contact-less optical acquisition techniques for the capture of traces are subject to research; chromatic white light sensors allow for multi-mode operation using coarse or detailed scans. The presence of potential fingerprints could be detected using fast coarse scans. Those Regions-of- Interest can be acquired afterwards with high-resolution detailed scans to allow for a verification or identification of individuals. An acquisition and analysis of fingerprint traces on different objects that are imported or pass borders might be a great enhancement for security. Additionally, if suspicious objects require a further investigation, an initial securing of potential fingerprints could be very useful. In this paper we show current research results for the coarse detection of fingerprints to prepare the detailed acquisition from various surface materials that are relevant for preventive applications.

Seasonal variations of number size distributions and mass concentrations of atmospheric particles in Beijing

NASA Astrophysics Data System (ADS)

Yu, Jianhua; Guinot, Benjamin; Yu, Tong; Wang, Xin; Liu, Wenqing

2005-06-01

Particle number and mass concentrations were measured in Beijing during the winter and summer periods in 2003, together with some other parameters including black carbon (BC) and meteorological conditions. Particle mass concentrations exhibited low seasonality, and the ratio of PM2.5/PM10 in winter was higher than that in summer. Particle number size distribution (PSD) was characterized by four modes and exhibited low seasonality. BC was well correlated with the number and mass concentrations of accumulation and coarse particles, indicating these size particles are related to anthropogenic activities. Particle mass and number concentrations (except ultra-fine and nucleation particles) followed well the trends of BC concentration for the majority of the day, indicating that most particles were associated with primary emissions. The diurnal number distributions of accumulation and coarse mode particles were characterized by two peaks.

Intramolecular energy transfer and the driving mechanisms for large-amplitude collective motions of clusters

NASA Astrophysics Data System (ADS)

Yanao, Tomohiro; Koon, Wang Sang; Marsden, Jerrold E.

2009-04-01

This paper uncovers novel and specific dynamical mechanisms that initiate large-amplitude collective motions in polyatomic molecules. These mechanisms are understood in terms of intramolecular energy transfer between modes and driving forces. Structural transition dynamics of a six-atom cluster between a symmetric and an elongated isomer is highlighted as an illustrative example of what is a general message. First, we introduce a general method of hyperspherical mode analysis to analyze the energy transfer among internal modes of polyatomic molecules. In this method, the (3n-6) internal modes of an n-atom molecule are classified generally into three coarse level gyration-radius modes, three fine level twisting modes, and (3n-12) fine level shearing modes. We show that a large amount of kinetic energy flows into the gyration-radius modes when the cluster undergoes structural transitions by changing its mass distribution. Based on this fact, we construct a reactive mode as a linear combination of the three gyration-radius modes. It is shown that before the reactive mode acquires a large amount of kinetic energy, activation or inactivation of the twisting modes, depending on the geometry of the isomer, plays crucial roles for the onset of a structural transition. Specifically, in a symmetric isomer with a spherical mass distribution, activation of specific twisting modes drives the structural transition into an elongated isomer by inducing a strong internal centrifugal force, which has the effect of elongating the mass distribution of the system. On the other hand, in an elongated isomer, inactivation of specific twisting modes initiates the structural transition into a symmetric isomer with lower potential energy by suppressing the elongation effect of the internal centrifugal force and making the effects of the potential force dominant. This driving mechanism for reactions as well as the present method of hyperspherical mode analysis should be widely applicable to molecular reactions in which a system changes its overall mass distribution in a significant way.

In situ measurements of particle settling velocity on the northern California continental shelf

NASA Astrophysics Data System (ADS)

Hill, P. S.; Sherwood, C. R.; Sternberg, R. W.; Nowell, A. R. M.

1994-08-01

As part of the Sediment TRansport Events on Shelves and Slopes (STRESS) program, a remote optical settling ☐ was deployed on the northern California continental shelf. The device operates by isolating a volume of sediment-laden fluid from the environment and then monitoring its sedimentation behavior with a transmissometer. Results show a bimodal distribution of suspended sediment during low-energy periods on the shelf that reflects the size distribution of bottom sediments. The coarse mode sinks at 0.026 cm s -1 (22 m day -1) and the fine mode settles at 0.0025 cm s -1 (2 m day -1). Between one-quarter and two-thirds of the total mass resides in the coarse mode. Roughly one-quarter is in the fine mode. The remainder sinks too slowly (<0.0015cm s -1 or <1.3m day -1) to be resolved during the 18-h measurement cycles. Greatest uncertainty in assigning mass to the various settling velocity classes comes from sensitivity to ill-constrained particle geometry of the conversion from light attenuation to mass. The device failed during higher energy periods, probably due to penetration of fluid into the ☐. Complete isolation of the fluid from the environment would improve the performance of settling ☐es in energetic settings.

NMSim web server: integrated approach for normal mode-based geometric simulations of biologically relevant conformational transitions in proteins.

PubMed

Krüger, Dennis M; Ahmed, Aqeel; Gohlke, Holger

2012-07-01

The NMSim web server implements a three-step approach for multiscale modeling of protein conformational changes. First, the protein structure is coarse-grained using the FIRST software. Second, a rigid cluster normal-mode analysis provides low-frequency normal modes. Third, these modes are used to extend the recently introduced idea of constrained geometric simulations by biasing backbone motions of the protein, whereas side chain motions are biased toward favorable rotamer states (NMSim). The generated structures are iteratively corrected regarding steric clashes and stereochemical constraint violations. The approach allows performing three simulation types: unbiased exploration of conformational space; pathway generation by a targeted simulation; and radius of gyration-guided simulation. On a data set of proteins with experimentally observed conformational changes, the NMSim approach has been shown to be a computationally efficient alternative to molecular dynamics simulations for conformational sampling of proteins. The generated conformations and pathways of conformational transitions can serve as input to docking approaches or more sophisticated sampling techniques. The web server output is a trajectory of generated conformations, Jmol representations of the coarse-graining and a subset of the trajectory and data plots of structural analyses. The NMSim webserver, accessible at http://www.nmsim.de, is free and open to all users with no login requirement.

A PWM Buck Converter With Load-Adaptive Power Transistor Scaling Scheme Using Analog-Digital Hybrid Control for High Energy Efficiency in Implantable Biomedical Systems.

PubMed

Park, Sung-Yun; Cho, Jihyun; Lee, Kyuseok; Yoon, Euisik

2015-12-01

We report a pulse width modulation (PWM) buck converter that is able to achieve a power conversion efficiency (PCE) of > 80% in light loads 100 μA) for implantable biomedical systems. In order to achieve a high PCE for the given light loads, the buck converter adaptively reconfigures the size of power PMOS and NMOS transistors and their gate drivers in accordance with load currents, while operating at a fixed frequency of 1 MHz. The buck converter employs the analog-digital hybrid control scheme for coarse/fine adjustment of power transistors. The coarse digital control generates an approximate duty cycle necessary for driving a given load and selects an appropriate width of power transistors to minimize redundant power dissipation. The fine analog control provides the final tuning of the duty cycle to compensate for the error from the coarse digital control. The mode switching between the analog and digital controls is accomplished by a mode arbiter which estimates the average of duty cycles for the given load condition from limit cycle oscillations (LCO) induced by coarse adjustment. The fabricated buck converter achieved a peak efficiency of 86.3% at 1.4 mA and > 80% efficiency for a wide range of load conditions from 45 μA to 4.1 mA, while generating 1 V output from 2.5-3.3 V supply. The converter occupies 0.375 mm(2) in 0.18 μm CMOS processes and requires two external components: 1.2 μF capacitor and 6.8 μH inductor.

A combined coarse-grained and all-atom simulation of TRPV1 channel gating and heat activation

PubMed Central

Qin, Feng

2015-01-01

The transient receptor potential (TRP) channels act as key sensors of various chemical and physical stimuli in eukaryotic cells. Despite years of study, the molecular mechanisms of TRP channel activation remain unclear. To elucidate the structural, dynamic, and energetic basis of gating in TRPV1 (a founding member of the TRPV subfamily), we performed coarse-grained modeling and all-atom molecular dynamics (MD) simulation based on the recently solved high resolution structures of the open and closed form of TRPV1. Our coarse-grained normal mode analysis captures two key modes of collective motions involved in the TRPV1 gating transition, featuring a quaternary twist motion of the transmembrane domains (TMDs) relative to the intracellular domains (ICDs). Our transition pathway modeling predicts a sequence of structural movements that propagate from the ICDs to the TMDs via key interface domains (including the membrane proximal domain and the C-terminal domain), leading to sequential opening of the selectivity filter followed by the lower gate in the channel pore (confirmed by modeling conformational changes induced by the activation of ICDs). The above findings of coarse-grained modeling are robust to perturbation by lipids. Finally, our MD simulation of the ICD identifies key residues that contribute differently to the nonpolar energy of the open and closed state, and these residues are predicted to control the temperature sensitivity of TRPV1 gating. These computational predictions offer new insights to the mechanism for heat activation of TRPV1 gating, and will guide our future electrophysiology and mutagenesis studies. PMID:25918362

What is the "Clim-Likely" aerosol product?

Atmospheric Science Data Center

2014-12-08

... identifying a range of components and mixtures for the MISR Standard Aerosol Retrieval Algorithm climatology, and as one standard against ... retrieval results. Six component aerosols included in the model were medium and coarse mode mineral dust, sulfate, sea salt, black ...

Angular dispersion of oblique phonon modes in BiFeO3 from micro-Raman scattering

NASA Astrophysics Data System (ADS)

Hlinka, J.; Pokorny, J.; Karimi, S.; Reaney, I. M.

2011-01-01

The angular dispersion of oblique phonon modes in a multiferroic BiFeO3 has been obtained from a micro-Raman spectroscopic investigation of a coarse grain ceramic sample. Continuity of the measured angular dispersion curves allows conclusive identification of all pure zone-center polar modes. The method employed here to reconstruct the anisotropic crystal property from a large set of independent local measurements on a macroscopically isotropic ceramic sample profits from the considerable dispersion of the oblique modes in ferroelectric perovskites and it can be in principle conveniently applied to any other optically uniaxial ferroelectric material.

Coarse and fine aerosol source apportionment in Rio de Janeiro, Brazil

NASA Astrophysics Data System (ADS)

Godoy, Maria Luiza D. P.; Godoy, José Marcus; Roldão, Luiz Alfredo; Soluri, Daniela S.; Donagemma, Raquel A.

The metropolitan area of Rio de Janeiro is one of the twenty biggest urban agglomerations in the world, with 11 million inhabitants in the metropolitan area, and has a high population density, with 1700 hab. km -2. For this aerosol source apportionment study, the atmospheric aerosol sampling was performed at ten sites distributed in different locations of the metropolitan area from September/2003 to December/2005, with sampling during 24 h on a weekly basis. Stacked filter units (SFU) were used to collect fine and coarse aerosol particles with a flow rate of 17 L min -1. In both size fractions trace elements were analyzed by Inductively Coupled Plasma-Mass Spectrometry (ICP-MS) as well as water-soluble species by Ion-Chromatography (IC). Also gravimetric analysis and reflectance measurements provided aerosol mass and black carbon concentrations. Very good detection limits for up to 42 species were obtained. Mean annual PM 10 mass concentration ranged from 20 to 37 μg m -3, values that are within the Brazilian air quality standards. Receptor models such as principal factor analysis, cluster analysis and absolute principal factor analysis were applied in order to identify and quantify the aerosol sources. For fine and coarse modes, circa of 100% of the measured mass was quantitatively apportioned to relatively few identified aerosol sources. A very similar and consistent source apportionment was obtained for both fine and coarse modes for all 10 sampling sites. Soil dust is an important component, accounting for 22-72% and for 25-48% of the coarse and fine mass respectively. On the other hand, anthropogenic sources as vehicle traffic and oil combustion represent a relatively high contribution (52-75%) of the fine aerosol mass. The joint use of ICP-MS and IC analysis of species in aerosols has proven to be reliable and feasible for the analysis of large amount of samples, and the coupling with receptor models provided an excellent method for quantitative aerosol source apportionment in large urban areas.

Diurnal trends in coarse particulate matter composition in the Los Angeles Basin.

PubMed

Cheung, Kalam; Daher, Nancy; Shafer, Martin M; Ning, Zhi; Schauer, James J; Sioutas, Constantinos

2011-11-01

To investigate the diurnal profile of the concentration and composition of ambient coarse particles, three sampling sites were set up in the Los Angeles Basin to collect coarse particulate matter (CPM) in four different time periods of the day (morning, midday, afternoon and overnight) in summer and winter. The samples were analyzed for total and water-soluble elements, inorganic ions and water-soluble organic carbon (WSOC). In summer, highest concentrations of CPM gravimetric mass, mineral and road dust, and WSOC were observed in midday and afternoon, when the prevailing onshore wind was stronger. In general, atmospheric dilution was lower in winter, contributing to the accumulation of air pollutants during stagnation conditions. Turbulences induced by traffic become a significant particle re-suspension mechanism, particularly during winter night time, when mixing height was lowest. This is evident by the high levels of CPM mass, mineral and road dust in winter overnight at the near-freeway sites located in urban Los Angeles, and to a lesser extent in Riverside. WSOC levels were higher in summer, with a similar diurnal profile with mineral and road dust, indicating that they either share common sources, or that WSOC may be adsorbed or absorbed onto the surfaces of these dust particles. In general, the contribution of inorganic ions to CPM mass was greater in the overnight sampling period at all sampling sites, suggesting that the prevailing meteorological conditions (lower temperature and higher relative humidity) favor the formation of these ions in the coarse mode. Nitrate, the most abundant CPM-bound inorganic species in this basin, is found to be predominantly formed by reactions with sea salt particles in summer. When the sea salt concentrations were low, the reaction with mineral dust particles and the condensation of ammonium nitrate on CPM surfaces also contributes to the formation of nitrate in the coarse mode.

Chemical characterization of size-segregated PM from different public transport modes and implications of source specific contribution to public exposure.

PubMed

Jiang, Sabrina Yanan; Gali, Nirmal Kumar; Yang, Fenhuan; Zhang, Junke; Ning, Zhi

2017-08-01

To investigate the chemical properties of particulate matter (PM) in different public transport microenvironments in Hong Kong, the coarse (2.5-10 μm) and fine (<2.5 μm) PM samples were collected in three different types of transport modes including Mass Transit Railway (MTR)-Aboveground (AG), MTR Underground (UG), and Bus routes from October 2013 to April 2014. Average PM 2.5 concentrations through UG, AG, and Bus routes were 47.9, 86.8, and 43.8 μg m -3 , respectively, whereas the coarse PM concentrations were 4-5 folds less. The PM 2.5 total metal concentrations of AG route were 2.3 and 3.7 times of UG and BUS routes, respectively, compared to those in the other two routes. The most abundant metals at three stations in PM 2.5 and coarse PM were quite similar and mainly generated by frictional processes of wheels, rails, and brakes of the system as well as by the mechanical wearing of these parts. The most abundant PAH in three routes in PM 2.5 was ATRQN, followed by 2-MNA, and the sum of them contributed to 35 and 42% of total PAHs in coarse PM and PM 2.5 , respectively. Crude oils, lubricant oil, diesel emissions would be the major sources of PAHs from MTR aboveground stations. The relative abundance of the n-alkanes among different samples was similar to the PAHs and the carbon preference index (CPI) values of the whole n-alkanes range were consistently from 0.99 to 1.04 among all samples indicating the significant contribution from the vehicle exhaust and fossil fuel burning. The concentrations of hopanes and steranes were higher in PM 2.5 than in coarse PM due to diesel and coal burning. These results may provide a unique opportunity to investigate source specific contribution of the PM pollutants to the commuter exposure in public transport.

On spacecraft maneuvers control subject to propellant engine modes.

PubMed

Mazinan, A H

2015-09-01

The paper attempts to address a new control approach to spacecraft maneuvers based upon the modes of propellant engine. A realization of control strategy is now presented in engine on mode (high thrusts as well as further low thrusts), which is related to small angle maneuvers and engine off mode (specified low thrusts), which is also related to large angle maneuvers. There is currently a coarse-fine tuning in engine on mode. It is shown that the process of handling the angular velocities are finalized via rate feedback system in engine modes, where the angular rotations are controlled through quaternion based control (QBCL)strategy in engine off mode and these ones are also controlled through an optimum PID (OPIDH) strategy in engine on mode. Copyright © 2015 ISA. Published by Elsevier Ltd. All rights reserved.

Braids and phase gates through high-frequency virtual tunneling of Majorana zero modes

NASA Astrophysics Data System (ADS)

Gorantla, Pranay; Sensarma, Rajdeep

2018-05-01

Braiding of non-Abelian Majorana anyons is a first step towards using them in quantum computing. We propose a protocol for braiding Majorana zero modes formed at the edges of nanowires with strong spin-orbit coupling and proximity-induced superconductivity. Our protocol uses high-frequency virtual tunneling between the ends of the nanowires in a trijunction, which leads to an effective low-frequency coarse-grained dynamics for the system, to perform the braid. The braiding operation is immune to amplitude noise in the drives and depends only on relative phase between the drives, which can be controlled by the usual phase-locking techniques. We also show how a phase gate, which is necessary for universal quantum computation, can be implemented with our protocol.

Analysis Tools for CFD Multigrid Solvers

NASA Technical Reports Server (NTRS)

Mineck, Raymond E.; Thomas, James L.; Diskin, Boris

2004-01-01

Analysis tools are needed to guide the development and evaluate the performance of multigrid solvers for the fluid flow equations. Classical analysis tools, such as local mode analysis, often fail to accurately predict performance. Two-grid analysis tools, herein referred to as Idealized Coarse Grid and Idealized Relaxation iterations, have been developed and evaluated within a pilot multigrid solver. These new tools are applicable to general systems of equations and/or discretizations and point to problem areas within an existing multigrid solver. Idealized Relaxation and Idealized Coarse Grid are applied in developing textbook-efficient multigrid solvers for incompressible stagnation flow problems.

Size Distributions and Formation Pathways of Organic and Inorganic Constituents in Spring Aerosols from Okinawa Island in the Western North Pacific Rim: An Outflow Region of Asian Dusts

NASA Astrophysics Data System (ADS)

Deshmukh, D. K.; Lazaar, M.; Kawamura, K.; Kunwar, B.; Tachibana, E.; Boreddy, S. K. R.

2015-12-01

Size-segregated aerosols (9-stages) were collected at Okinawa Island in the western North Pacific Rim in spring 2008. The samples were analyzed for diacids (C2-C12), ω-oxoacids (ωC2-ωC9), a-dicarbonyls (C2-C3), organic carbon (OC), water-soluble OC (WSOC) and major ions to understand the sources and atmospheric processes in the outflow region of Asian pollutants. The molecular distribution of diacids showed the predominance of oxalic acid (C2) followed by malonic and succinic acids in all the size-segregated aerosols. ω-Oxoacids showed the predominance of glyoxylic acid (ωC2) whereas glyoxal (Gly) was more abundant than methylglyoxal in all the sizes. The abundant presence of sulfate as well as phthalic and adipic acids in Okinawa aerosols suggested a significant contribution of anthropogenic sources in East Asia via long-range atmospheric transport. Diacids (C2-C5), ωC2 and Gly as well as WSOC and OC peaked at 0.65-1.1 µm in fine mode whereas azelaic (C9) and 9-oxononanoic (ωC9) acids peaked at 3.3-4.7 µm in coarse mode. Sulfate and ammonium are enriched in fine mode whereas sodium and chloride are in coarse mode. An important mechanism for the formation of these organic species in Okinawa aerosols is probably gas phase oxidation of VOCs and subsequent in-cloud processing during long-range transport. Their characteristics size distribution implies that fine particles enriched with these organic and inorganic species could act as CCN to develop the cloud cover over the western North Pacific. The major peak of C9 and ωC9 on coarse mode suggest that they are produced by photooxidation of unsaturated fatty acids mainly derived from phytoplankton via heterogeneous reactions on sea spray particles. This study demonstrates that anthropogenic aerosols emitted from East Asia have significant influence on the compositions of organic and inorganic aerosols in the western North Pacific Rim.

Size distributions of polycyclic aromatic hydrocarbons in urban atmosphere: sorption mechanism and source contributions to respiratory deposition

NASA Astrophysics Data System (ADS)

Lv, Yan; Li, Xiang; Xu, Ting Ting; Cheng, Tian Tao; Yang, Xin; Chen, Jian Min; Iinuma, Yoshiteru; Herrmann, Hartmut

2016-03-01

In order to better understand the particle size distribution of polycyclic aromatic hydrocarbons (PAHs) and their source contribution to human respiratory system, size-resolved PAHs have been studied in ambient aerosols at a megacity Shanghai site during a 1-year period (2012-2013). The results showed the PAHs had a bimodal distribution with one mode peak in the fine-particle size range (0.4-2.1 µm) and another mode peak in the coarse-particle size range (3.3-9.0 µm). Along with the increase in ring number of PAHs, the intensity of the fine-mode peak increased, while the coarse-mode peak decreased. Plotting of log(PAH / PM) against log(Dp) showed that all slope values were above -1, suggesting that multiple mechanisms (adsorption and absorption) controlled the particle size distribution of PAHs. The total deposition flux of PAHs in the respiratory tract was calculated as being 8.8 ± 2.0 ng h-1. The highest lifetime cancer risk (LCR) was estimated at 1.5 × 10-6, which exceeded the unit risk of 10-6. The LCR values presented here were mainly influenced by accumulation mode PAHs which came from biomass burning (24 %), coal combustion (25 %), and vehicular emission (27 %). The present study provides us with a mechanistic understanding of the particle size distribution of PAHs and their transport in the human respiratory system, which can help develop better source control strategies.

Glass transition of charged particles in two-dimensional confinement.

PubMed

Yazdi, Anoosheh; Heinen, Marco; Ivlev, Alexei; Löwen, Hartmut; Sperl, Matthias

2015-05-01

The glass transition of mesoscopic charged particles in two-dimensional confinement is studied by mode-coupling theory. We consider two types of effective interactions between the particles, corresponding to two different models for the distribution of surrounding ions that are integrated out in coarse-grained descriptions. In the first model, a planar monolayer of charged particles is immersed in an unbounded isotropic bath of ions, giving rise to an isotropically screened Debye-Hückel (Yukawa)-type effective interaction. The second, experimentally more relevant system is a monolayer of negatively charged particles that levitate atop a flat horizontal electrode, as frequently encountered in laboratory experiments with complex (dusty) plasmas. A steady plasma current toward the electrode gives rise to an anisotropic effective interaction potential between the particles, with an algebraically long-ranged in-plane decay. In a comprehensive parameter scan that covers the typical range of experimentally accessible plasma conditions, we calculate and compare the mode-coupling predictions for the glass transition in both kinds of systems.

A Probabilistic Model for Sediment Entrainment: the Role of Bed Irregularity

NASA Astrophysics Data System (ADS)

Thanos Papanicolaou, A. N.

2017-04-01

A generalized probabilistic model is developed in this study to predict sediment entrainment under the incipient motion, rolling, and pickup modes. A novelty of the proposed model is that it incorporates in its formulation the probability density function of the bed shear stress, instead of the near-bed velocity fluctuations, to account for the effects of both flow turbulence and bed surface irregularity on sediment entrainment. The proposed model incorporates in its formulation the collective effects of three parameters describing bed surface irregularity, namely the relative roughness, the volumetric fraction and relative position of sediment particles within the active layer. Another key feature of the model is that it provides a criterion for estimating the lift and drag coefficients jointly based on the recognition that lift and drag forces acting on sediment particles are interdependent and vary with particle protrusion and packing density. The model was validated using laboratory data of both fine and coarse sediment and was compared with previously published models. The study results show that for the fine sediment data, where the sediment particles have more uniform gradation and relative roughness is not a factor, all the examined models perform adequately. The proposed model was particularly suited for the coarse sediment data, where the increased bed irregularity was captured by the new parameters introduced in the model formulations. As a result, the proposed model yielded smaller prediction errors and physically acceptable values for the lift coefficient compared to the other models in case of the coarse sediment data.

Global Motions of the Nuclear Pore Complex: Insights from Elastic Network Models

PubMed Central

Lezon, Timothy R.; Sali, Andrej; Bahar, Ivet

2009-01-01

The nuclear pore complex (NPC) is the gate to the nucleus. Recent determination of the configuration of proteins in the yeast NPC at ∼5 nm resolution permits us to study the NPC global dynamics using coarse-grained structural models. We investigate these large-scale motions by using an extended elastic network model (ENM) formalism applied to several coarse-grained representations of the NPC. Two types of collective motions (global modes) are predicted by the ENMs to be intrinsically favored by the NPC architecture: global bending and extension/contraction from circular to elliptical shapes. These motions are shown to be robust against tested variations in the representation of the NPC, and are largely captured by a simple model of a toroid with axially varying mass density. We demonstrate that spoke multiplicity significantly affects the accessible number of symmetric low-energy modes of motion; the NPC-like toroidal structures composed of 8 spokes have access to highly cooperative symmetric motions that are inaccessible to toroids composed of 7 or 9 spokes. The analysis reveals modes of motion that may facilitate macromolecular transport through the NPC, consistent with previous experimental observations. PMID:19730674

Global motions of the nuclear pore complex: insights from elastic network models.

PubMed

Lezon, Timothy R; Sali, Andrej; Bahar, Ivet

2009-09-01

The nuclear pore complex (NPC) is the gate to the nucleus. Recent determination of the configuration of proteins in the yeast NPC at approximately 5 nm resolution permits us to study the NPC global dynamics using coarse-grained structural models. We investigate these large-scale motions by using an extended elastic network model (ENM) formalism applied to several coarse-grained representations of the NPC. Two types of collective motions (global modes) are predicted by the ENMs to be intrinsically favored by the NPC architecture: global bending and extension/contraction from circular to elliptical shapes. These motions are shown to be robust against tested variations in the representation of the NPC, and are largely captured by a simple model of a toroid with axially varying mass density. We demonstrate that spoke multiplicity significantly affects the accessible number of symmetric low-energy modes of motion; the NPC-like toroidal structures composed of 8 spokes have access to highly cooperative symmetric motions that are inaccessible to toroids composed of 7 or 9 spokes. The analysis reveals modes of motion that may facilitate macromolecular transport through the NPC, consistent with previous experimental observations.

Density-cluster NMA: A new protein decomposition technique for coarse-grained normal mode analysis.

PubMed

Demerdash, Omar N A; Mitchell, Julie C

2012-07-01

Normal mode analysis has emerged as a useful technique for investigating protein motions on long time scales. This is largely due to the advent of coarse-graining techniques, particularly Hooke's Law-based potentials and the rotational-translational blocking (RTB) method for reducing the size of the force-constant matrix, the Hessian. Here we present a new method for domain decomposition for use in RTB that is based on hierarchical clustering of atomic density gradients, which we call Density-Cluster RTB (DCRTB). The method reduces the number of degrees of freedom by 85-90% compared with the standard blocking approaches. We compared the normal modes from DCRTB against standard RTB using 1-4 residues in sequence in a single block, with good agreement between the two methods. We also show that Density-Cluster RTB and standard RTB perform well in capturing the experimentally determined direction of conformational change. Significantly, we report superior correlation of DCRTB with B-factors compared with 1-4 residue per block RTB. Finally, we show significant reduction in computational cost for Density-Cluster RTB that is nearly 100-fold for many examples. Copyright © 2012 Wiley Periodicals, Inc.

Climate model biases in jet streams, blocking and storm tracks resulting from missing orographic drag

NASA Astrophysics Data System (ADS)

Pithan, Felix; Shepherd, Theodore G.; Zappa, Giuseppe; Sandu, Irina

2016-07-01

State-of-the art climate models generally struggle to represent important features of the large-scale circulation. Common model deficiencies include an equatorward bias in the location of the midlatitude westerlies and an overly zonal orientation of the North Atlantic storm track. Orography is known to strongly affect the atmospheric circulation and is notoriously difficult to represent in coarse-resolution climate models. Yet how the representation of orography affects circulation biases in current climate models is not understood. Here we show that the effects of switching off the parameterization of drag from low-level orographic blocking in one climate model resemble the biases of the Coupled Model Intercomparison Project Phase 5 ensemble: An overly zonal wintertime North Atlantic storm track and less European blocking events, and an equatorward shift in the Southern Hemispheric jet and increase in the Southern Annular Mode time scale. This suggests that typical circulation biases in coarse-resolution climate models may be alleviated by improved parameterizations of low-level drag.

Evidence of a Weakly Absorbing Intermediate Mode of Aerosols in AERONET Data from Saharan and Sahelian Sites

NASA Technical Reports Server (NTRS)

Gianelli, Scott M.; Lacis, Andrew A.; Carlson, Barbara E.; Hameed, Sultan

2013-01-01

Accurate retrievals of aerosol size distribution are necessary to estimate aerosols' impact on climate and human health. The inversions of the Aerosol Robotic Network (AERONET) usually retrieve bimodal distributions. However, when the inversion is applied to Saharan and Sahelian dust, an additional mode of intermediate size between the coarse and fine modes is sometimes seen. This mode explains peculiarities in the behavior of the Angstrom exponent, along with the fine mode fraction retrieved using the spectral deconvolution algorithm, observed in a March 2006 dust storm. For this study, 15 AERONET sites in northern Africa and on the Atlantic are examined to determine the frequency and properties of the intermediate mode. The mode is observed most frequently at Ilorin in Nigeria. It is also observed at Capo Verde and multiple sites located within the Sahel but much less frequently at sites in the northern Sahara and the Canary Islands. The presence of the intermediate mode coincides with increases in Angstrom exponent, fine mode fraction, single-scattering albedo, and to a lesser extent percent sphericity. The Angstrom exponent decreases with increasing optical depth at most sites when the intermediate mode is present, but the fine mode fraction does not. Single-scattering albedo does not steadily decrease with fine mode fraction when the intermediate mode is present, as it does in typical mixtures of dust and biomass-burning aerosols. Continued investigation is needed to further define the intermediate mode's properties, determine why it differs from most Saharan dust, and identify its climate and health effects.

Detailed mass size distributions of atmospheric aerosol species in the Negev desert, Israel, during ARACHNE-96

NASA Astrophysics Data System (ADS)

Maenhaut, Willy; Ptasinski, Jacek; Cafmeyer, Jan

1999-04-01

As part of the 1996 summer intensive of the Aerosol, RAdiation and CHemistry Experiment (ARACHNE-96), the mass size distribution of various airborne particulate elements was studied at a remote site in the Negev Desert, Israel. Aerosol collections were made with 8-stage PIXE International cascade impactors (PCIs) and 12-stage small deposit area low pressure impactors (SDIs) and the samples were analyzed by PIXE for about 20 elements. The mineral elements (Al, Si, Ca, Ti, Fe) exhibited a unimodal size distribution which peaked at about 6 μm, but the contribution of particles larger than 10 μm was clearly more pronounced during the day than during night. Sulphur and Br had a tendency to exhibit two modes in the submicrometer size range, with diameters at about 0.3 and 0.6 μm, respectively. The elements V and Ni, which are indicators of residual fuel burning, showed essentially one fine mode (at 0.3 μm) in addition to a coarse mode which represented the mineral dust contribution. Overall, good agreement was observed between the mass size distributions from the PCI and SDI devices. The PCI was superior to the SDI for studying the size distribution in the coarse size range, but the SDI was clearly superior for unravelling the various modes in the submicrometer size range.

Characterization of water-soluble organic aerosol in coastal New England: Implications of variations in size distribution

NASA Astrophysics Data System (ADS)

Ziemba, L. D.; Griffin, R. J.; Whitlow, S.; Talbot, R. W.

2011-12-01

Size distributions up to 10-micron aerosol diameter ( DP) of organic carbon (OC) and water-soluble organic carbon (WSOC) were measured at two sites in coastal New England, slightly inland at Thompson Farm (TF) and offshore at Isles of Shoals (IOS). Significant OC concentrations were measured across the full size distribution at TF and IOS, respectively. The WSOC fraction (WSOC/OC) was largest in the accumulation mode with values of 0.86 and 0.93 and smallest in the coarse mode with values of 0.61 and 0.79 at TF and IOS, respectively. Dicarboxylic acids containing up to five carbon atoms (C 5) were concentrated in droplet and accumulation mode aerosol with only minor contributions in the coarse mode. C 1-C 3 monocarboxylic acids were generally near or below detection limits. Results from proton nuclear magnetic resonance (H +-NMR) spectroscopy analyses showed that the organic functional group characterized by protons in the alpha position to an unsaturated carbon atoms ([H-C-C dbnd ]) was the dominant WSOC functionality at both TF and IOS, constituting 34 and 43% of carbon-weighted H +-NMR signal, respectively. Size distributions of each H +-NMR-resolved organic functionality are presented. Source apportionment using H +-NMR fingerprints is also presented, and results indicate that nearly all of the WSOC at TF and IOS spectroscopically resembled secondary organic aerosol, regardless of DP.

Buckling analysis of Big Dee Vacuum Vessel

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lightner, S.; Gallix, R.

1983-12-01

A simplified three-dimensional shell buckling analysis of the GA Technologies Inc., Big Dee Vacuum Vessel (V/V) was performed using the finite element program TRICO. A coarse-mesh linear elastic model, which accommodated the support boundary conditions, was used to determine the buckling mode shape under a uniform external pressure. Using this buckling mode shape, refined models were used to calculate the linear buckling load (P/sub crit/) more accurately. Several different designs of the Big Dee V/V were considered in this analysis. The supports for the V/V were equally-spaced radial pins at the outer diameter of the mid-plane. For all the casesmore » considered, the buckling mode was axisymmetric in the toroidal direction. Therefore, it was possible to use only a small angular sector of a toric shell for the refined analysis. P/sub crit/ for the Big Dee is about 60 atm for a uniform external pressure. Also investigated in this analysis were the effects of geometrical imperfections and non-uniform pressure distributions.« less

Dynamic Transmission of Protein Allostery without Structural Change: Spatial Pathways or Global Modes?

PubMed Central

McLeish, Tom C.B.; Cann, Martin J.; Rodgers, Thomas L.

2015-01-01

We examine the contrast between mechanisms for allosteric signaling that involve structural change, and those that do not, from the perspective of allosteric pathways. In particular we treat in detail the case of fluctuation-allostery by which amplitude modulation of the thermal fluctuations of the elastic normal modes conveys the allosteric signal, and address the question of what an allosteric pathway means in this case. We find that a perturbation theory of thermal elastic solids and nonperturbative approach (by super-coarse-graining elasticity into internal bending modes) have opposite signatures in their structure of correlated pathways. We illustrate the effect from analysis of previous results from GlxR of Corynebacterium glutamicum, an example of the CRP/FNR transcription family of allosteric homodimers. We find that the visibility of both correlated pathways and disconnected sites of correlated motion in this protein suggests that mechanisms of local elastic stretch and bend are recruited for the purpose of creating and controlling allosteric cooperativity. PMID:26338443

Formation of incoherent deformation twin boundaries in a coarse-grained Al-7Mg alloy

NASA Astrophysics Data System (ADS)

Jin, S. B.; Zhang, K.; Bjørge, R.; Tao, N. R.; Marthinsen, K.; Lu, K.; Li, Y. J.

2015-08-01

Deformation twinning has rarely been observed in coarse grained Al and its alloys except under some extreme conditions such as ultrahigh deformation strain or strain rates. Here, we report that a significant amount of Σ3 deformation twins could be generated in a coarse-grained Al-7 Mg alloy by dynamic plastic deformation (DPD). A systematic investigation of the Σ3 boundaries shows that they are Σ3{112} type incoherent twin boundaries (ITBs). These ITBs have formed by gradual evolution from copious low-angle deformation bands through <111>-twist Σ boundaries by lattice rotation. These findings provide an approach to generate deformation twin boundaries in high stacking fault energy metallic alloys. It is suggested that high solution content of Mg in the alloy and the special deformation mode of DPD played an important role in formation of the Σ and ITBs.

Coarse-graining of proteins based on elastic network models

NASA Astrophysics Data System (ADS)

Sinitskiy, Anton V.; Voth, Gregory A.

2013-08-01

To simulate molecular processes on biologically relevant length- and timescales, coarse-grained (CG) models of biomolecular systems with tens to even hundreds of residues per CG site are required. One possible way to build such models is explored in this article: an elastic network model (ENM) is employed to define the CG variables. Free energy surfaces are approximated by Taylor series, with the coefficients found by force-matching. CG potentials are shown to undergo renormalization due to roughness of the energy landscape and smoothing of it under coarse-graining. In the case study of hen egg-white lysozyme, the entropy factor is shown to be of critical importance for maintaining the native structure, and a relationship between the proposed ENM-mode-based CG models and traditional CG-bead-based models is discussed. The proposed approach uncovers the renormalizable character of CG models and offers new opportunities for automated and computationally efficient studies of complex free energy surfaces.

TRAFFIC-RELATED AIR POLLUTANTS AND CHILDREN'S RESPIRATORY HEALTH IN EL PASO AND DETROIT

EPA Science Inventory

Hypotheses -Specific Agent • Diesel exhaust particles • Ultrafine particles • Coarse-mode particles (road dust) • Noise and stress • Nonspecific irritants Previous Epidemiology • Kanawha Valley Health Study • Munich Traffic Study • Dutch Traffic Studies • S....

SIZE-SELECTING AEROSOL CHARACTERIZATION INSTRUMENT - PHASE II

EPA Science Inventory

Aerodyne Research, Inc., proposes to develop a new monitor that provides composition information of particles in the ultrafine (10-100 nm), fine (100 nm-2.5 µm) and coarse (2.5-10 µm) size modes in near real time. Particle monitoring technologies are important f...

Evaluation of coupling terms between intra- and intermolecular vibrations in coarse-grained normal-mode analysis: does a stronger acid make a stiffer hydrogen bond?

PubMed

Houjou, Hirohiko

2011-10-21

Using theory of harmonic normal-mode vibration analysis, we developed a procedure for evaluating the anisotropic stiffness of intermolecular forces. Our scheme for coarse-graining of molecular motions is modified so as to account for intramolecular vibrations in addition to relative translational/rotational displacement. We applied this new analytical scheme to four carboxylic acid dimers, for which coupling between intra- and intermolecular vibrations is crucial for determining the apparent stiffness of the intermolecular double hydrogen bond. The apparent stiffness constant was analyzed on the basis of a conjunct spring model, which defines contributions from true intermolecular stiffness and molecular internal stiffness. Consequently, the true intermolecular stiffness was in the range of 43-48 N m(-1) for all carboxylic acids studied, regardless of the molecules' acidity. We concluded that the difference in the apparent stiffness can be attributed to differences in the internal stiffness of the respective molecules. © 2011 American Institute of Physics

Evaluation of coupling terms between intra- and intermolecular vibrations in coarse-grained normal-mode analysis: Does a stronger acid make a stiffer hydrogen bond?

NASA Astrophysics Data System (ADS)

Houjou, Hirohiko

2011-10-01

Using theory of harmonic normal-mode vibration analysis, we developed a procedure for evaluating the anisotropic stiffness of intermolecular forces. Our scheme for coarse-graining of molecular motions is modified so as to account for intramolecular vibrations in addition to relative translational/rotational displacement. We applied this new analytical scheme to four carboxylic acid dimers, for which coupling between intra- and intermolecular vibrations is crucial for determining the apparent stiffness of the intermolecular double hydrogen bond. The apparent stiffness constant was analyzed on the basis of a conjunct spring model, which defines contributions from true intermolecular stiffness and molecular internal stiffness. Consequently, the true intermolecular stiffness was in the range of 43-48 N m-1 for all carboxylic acids studied, regardless of the molecules' acidity. We concluded that the difference in the apparent stiffness can be attributed to differences in the internal stiffness of the respective molecules.

Microphysical and Optical Properties of Saharan Dust Measured during the ICE-D Aircraft Campaign

NASA Astrophysics Data System (ADS)

Ryder, Claire; Marenco, Franco; Brooke, Jennifer; Cotton, Richard; Taylor, Jonathan

2017-04-01

During August 2015, the UK FAAM BAe146 research aircraft was stationed in Cape Verde off the coast of West Africa. Measurements of Saharan dust, and ice and liquid water clouds, were taken for the ICE-D (Ice in Clouds Experiment - Dust) project - a multidisciplinary project aimed at further understanding aerosol-cloud interactions. Six flights formed part of a sub-project, AER-D, solely focussing on measurements of Saharan dust within the African dust plume. Dust loadings observed during these flights varied (aerosol optical depths of 0.2 to 1.3), as did the vertical structure of the dust, the size distributions and the optical properties. The BAe146 was fully equipped to measure size distributions covering aerosol accumulation, coarse and giant modes. Initial results of size distribution and optical properties of dust from the AER-D flights will be presented, showing that a substantial coarse mode was present, in agreement with previous airborne measurements. Optical properties of dust relating to the measured size distributions will also be presented.

Selected water-soluble organic compounds found in size-resolved aerosols collected from urban, mountain and marine atmospheres over East Asia

NASA Astrophysics Data System (ADS)

Wang, Gehui; Kawamura, Kimitaka; Xie, Mingjie; Hu, Shuyuan; Li, Jianjun; Zhou, Bianhong; Cao, Junji; An, Zhisheng

2011-07-01

Primary (i.e. sugars and sugar-alcohols) and secondary (i.e. carboxylic acids) water-soluble organic compounds (WSOCs) in size-segregated aerosols from the urban and mountain atmosphere of China and from the marine atmosphere in the outflow region of East Asia were characterized on a molecular level. Levoglucosan is the most abundant compound among the quantified WSOCs in the urban and mountain atmosphere, whose concentration at the urban site was 1-2 orders of magnitude higher than that at the mountain and marine sites. In contrast, malic, succinic and phthalic acids were dominant among the measured WSOCs at the marine site. In the urban air, sugars except levoglucosan gave a bimodal size distribution with a large peak in fine range (<2.1 μm) and a small peak in coarse range (≥2.1 μm) during winter, being opposite to those in spring. In contrast, these WSOCs at the mountain and marine sites dominated in the coarse range but diminished and even disappeared in the fine range. Geometric mean diameters (GMDs) of the measured WSOCs in the fine mode at the urban site were larger in winter than in spring. Levoglucosan and carboxylic acids except for azelaic and benzoic acids showed a larger GMD in the coarse mode at the marine site probably due to an increased hygroscopic growth.

Coarse-grained protein-protein stiffnesses and dynamics from all-atom simulations

NASA Astrophysics Data System (ADS)

Hicks, Stephen D.; Henley, C. L.

2010-03-01

Large protein assemblies, such as virus capsids, may be coarse-grained as a set of rigid units linked by generalized (rotational and stretching) harmonic springs. We present an ab initio method to obtain the elastic parameters and overdamped dynamics for these springs from all-atom molecular-dynamics simulations of one pair of units at a time. The computed relaxation times of this pair give a consistency check for the simulation, and we can also find the corrective force needed to null systematic drifts. As a first application we predict the stiffness of an HIV capsid layer and the relaxation time for its breathing mode.

Aerosol Measurements in the Atmospheric Surface Layer at L'Aquila, Italy: Focus on Biogenic Primary Particles

NASA Astrophysics Data System (ADS)

Pitari, Giovanni; Coppari, Eleonora; De Luca, Natalia; Di Carlo, Piero; Pace, Loretta

2014-09-01

Two year measurements of aerosol concentration and size distribution (0.25 μm < d < 30 μm) in the atmospheric surface layer, collected in L'Aquila (Italy) with an optical particle counter, are reported and analysed for the different modes of the particle size distribution. A different seasonal behaviour is shown for fine mode aerosols (largely produced by anthropogenic combustion), coarse mode and large-sized aerosols, whose abundance is regulated not only by anthropogenic local production, but also by remote natural sources (via large scale atmospheric transport) and by local sources of primary biogenic aerosols. The observed total abundance of large particles with diameter larger than 10 μm is compared with a statistical counting of primary biogenic particles, made with an independent technique. Results of these two observational approaches are analysed and compared to each other, with the help of a box model driven by observed meteorological parameters and validated with measurements of fine and coarse mode aerosols and of an atmospheric primary pollutant of anthropogenic origin (NOx). Except in winter months, primary biogenic particles in the L'Aquila measurement site are shown to dominate the atmospheric boundary layer population of large aerosol particles with diameter larger than 10 μm (about 80 % of the total during summer months), with a pronounced seasonal cycle, contrary to fine mode aerosols of anthropogenic origin. In order to explain these findings, the main mechanisms controlling the abundance and variability of particulate matter tracers in the atmospheric surface layer are analysed with the numerical box-model.

Acute and chronic alveolitis/osteomyelitis ("lumpy jaw") in small exotic ruminants.

PubMed

Wiggs, R B; Lobprise, H B

1994-10-01

Tooth-related abscesses in small captive ruminants are most likely foreign body-induced periodontic-endodontic lesions. The instigating cause may be abnormal texture of dietary material. Bacteria, though probably not the initiating cause, significantly contribute to pathology and morbidity. Extraction of severely affected teeth is an effective although sometimes challenging mode of treatment. Periodically complications may arise, which vary in difficulty of treatment. Prevention may be the alteration of the major forage component of the diet to textures that are less coarse and stemmy, and the alleviation of any crowding and sanitation problems.

Probing Sub-atomistic Free-Volume Imperfections in Dry-Milled Nanoarsenicals with PAL Spectroscopy.

PubMed

Shpotyuk, Oleh; Ingram, Adam; Bujňáková, Zdenka; Baláž, Peter; Shpotyuk, Yaroslav

2016-12-01

Structural transformations caused by coarse-grained powdering and fine-grained mechanochemical milling in a dry mode were probed in high-temperature modification of tetra-arsenic tetra-sulfide known as β-As4S4. In respect to X-ray diffraction analysis, the characteristic sizes of β-As4S4 crystallites in these coarse- and fine-grained powdered pellets were 90 and 40 nm, respectively. Positron annihilation lifetime spectroscopy was employed to characterize transformations occurred in free-volume structure of these nanoarsenicals. Experimentally measured positron lifetime spectra were parameterized in respect to three- or two-term fitting procedures and respectively compared with those accumulated for single crystalline realgar α-As4S4 polymorph. The effect of coarse-grained powdering was found to result in generation of large amount of positron and positronium Ps trapping sites inside arsenicals in addition to existing ones. In fine-grained powdered β-As4S4 pellets, the positron trapping sites with characteristic free volumes close to bi- and tri-atomic vacancies were evidently dominated. These defects were supposed to originate from grain boundary regions and interfacial free volumes near aggregated β-As4S4 crystallites. Thus, the cumulative production of different positron traps with lifetimes close to defect-related lifetimes in realgar α-As4S4 polymorph was detected in fine-grained milled samples.

An episode of extremely high PM concentrations over Central Europe caused by dust emitted over the southern Ukraine

NASA Astrophysics Data System (ADS)

Birmili, W.; Schepanski, K.; Ansmann, A.; Spindler, G.; Tegen, I.; Wehner, B.; Nowak, A.; Reimer, E.; Mattis, I.; Müller, K.; Brüggemann, E.; Gnauk, T.; Herrmann, H.; Wiedensohler, A.; Althausen, D.; Schladitz, A.; Tuch, T.; Löschau, G.

2007-08-01

On 24 March 2007, the atmosphere over Central Europe was affected by an episode of exceptionally high mass concentrations of aerosol particles, most likely caused by a dust storm in the Southern Ukraine on the preceding day. At ground-based measurement stations in Slovakia, the Czech Republic, Poland and Germany PM10 mass concentrations rose to values between 200 and 1400 μg m-3. An evaluation of PM10 measurements from 360 monitoring stations showed that the dust cloud advanced along a narrow corridor at speeds of up to 70 km h-1. According to lidar observations over Leipzig, Germany, the high aerosol concentrations were confined to a homogeneous boundary layer of 1800 m height. The wavelength dependence of light extinction using both lidar and sun photometer measurements suggested the dominance of coarse particles during the main event. At a wavelength of 532 nm, relatively high volume extinction coefficients (300-400 Mm-1) and a particle optical depth of 0.65 was observed. In-situ measurements with an aerodynamic particle sizer at Melpitz, Germany, confirmed the presence of a coarse particle mode with a mode diameter >2 μm, whose maximum concentration coincided with that of PM10. A chemical particle analysis confirmed the dominance of non-volatile and insoluble matter in the coarse mode as well as high enrichments of Ti and Fe, which are characteristic of soil dust. A combination of back trajectory calculations and satellite images allowed to identify the dust source with confidence: On 23 March 2007, large amounts of dust were emitted from dried-out farmlands in the southern Ukraine, facilitated by wind gusts up to 100 km h-1. The unusual vertical stability and confined height of this dust layer as well as the rapid transport under dry conditions led to the conservation of high aerosol mass concentrations along the transect and thus to the extraordinary high aerosol concentrations over Central Europe. Our observations demonstrate the capacity of a combined apparatus of in situ and remote sensing measurements to characterise such a dust with a variety of aerosol parameters. As a conclusion, the description of dust emission, transport and transformation processes needs to be improved, especially when facing the possible effects of further anthropogenic desertification and climate change.

Structural alignment sensor. [laser applications and interferometry

NASA Technical Reports Server (NTRS)

Davis, L.; Buholz, N. E.; Gillard, C. W.; Huang, C. C.; Wells, W. M., III

1978-01-01

Comparative Michelson interferometers are discussed as well as the operating range potential of a structural alignment sensor (SAS) which requires only one laser mode. Schematics are presented for the distance measurement logic, the basic SAS system, the SAS optical layout, the coarse measurement signal processor, and the measured range resolution.

Ground-based observation of aerosol optical properties in Lanzhou, China.

PubMed

Yu, Xingna; Zhu, Bin; Fan, Shuxian; Yin, Yan; Bu, Xiaoli

2009-01-01

Aerosol optical properties from August 2006 to July 2007 were obtained from ground-based and sky radiance measurements in Semi-Arid Climate and Environment Observatory of Lanzhou University (SACOL), China. High aerosol optical thickness (AOT) associated with low Angström exponent (alpha) was mainly observed in spring, which was consistent with the seasonal dust production from Hexi Corridor. The maximum monthly average value of AOT 0.56 occurred in March of 2007, which was two times larger than the minimum value of 0.28 in October of 2006. Approximately 60% of the AOT ranged between 0.3 and 0.5, and nearly 93% of alpha value varied from 0.1 to 0.8, which occurred in spring. The significant correlation between aerosol properties and water vapor content was not observed. The aerosol volume size distribution can be characterized by the bimodal logarithm normal structure: fine mode (r < 0.6 microm) and coarse mode (r > 0.6 microm). Aerosols in spring of SACOL were dominated by large particles with the volume concentration ratio of coarse to fine modes being 7.85. The average values of asymmetry factor (g) in the wavelength range 440-1020 nm were found to be 0.71, 0.67, 0.67 and 0.69 in spring, summer, autumn and winter, respectively.

A model-reduction approach in micromechanics of materials preserving the variational structure of constitutive relations

NASA Astrophysics Data System (ADS)

Michel, Jean-Claude; Suquet, Pierre

2016-05-01

In 2003 the authors proposed a model-reduction technique, called the Nonuniform Transformation Field Analysis (NTFA), based on a decomposition of the local fields of internal variables on a reduced basis of modes, to analyze the effective response of composite materials. The present study extends and improves on this approach in different directions. It is first shown that when the constitutive relations of the constituents derive from two potentials, this structure is passed to the NTFA model. Another structure-preserving model, the hybrid NTFA model of Fritzen and Leuschner, is analyzed and found to differ (slightly) from the primal NTFA model (it does not exhibit the same variational upper bound character). To avoid the "on-line" computation of local fields required by the hybrid model, new reduced evolution equations for the reduced variables are proposed, based on an expansion to second order (TSO) of the potential of the hybrid model. The coarse dynamics can then be entirely expressed in terms of quantities which can be pre-computed once for all. Roughly speaking, these pre-computed quantities depend only on the average and fluctuations per phase of the modes and of the associated stress fields. The accuracy of the new NTFA-TSO model is assessed by comparison with full-field simulations. The acceleration provided by the new coarse dynamics over the full-field computations (and over the hybrid model) is then spectacular, larger by three orders of magnitude than the acceleration due to the sole reduction of unknowns.

Baseline Maritime Aerosol: Methodology to Derive the Optical Thickness and Scattering Properties

NASA Technical Reports Server (NTRS)

Kaufman, Yoram J.; Smirnov, Alexander; Holben, Brent N.; Dubovik, Oleg; Einaudi, Franco (Technical Monitor)

2001-01-01

Satellite Measurements of the global distribution of aerosol and their effect on climate should be viewed in respect to a baseline aerosol. In this concept, concentration of fine mode aerosol particles is elevated above the baseline by man-made activities (smoke or urban pollution), while coarse mode by natural processes (e.g. dust or sea-spray). Using 1-3 years of measurements in 10 stations of the Aerosol Robotic network (ACRONET we develop a methodology and derive the optical thickness and properties of this baseline aerosol for the Pacific and Atlantic Oceans. Defined as the median for periods of stable optical thickness (standard deviation < 0.02) during 2-6 days, the median baseline aerosol optical thickness over the Pacific Ocean is 0.052 at 500 am with Angstrom exponent of 0.77, and 0.071 and 1.1 respectively, over the Atlantic Ocean.

Aerosol Retrievals from ARM SGP MFRSR Data

DOE Data Explorer

Alexandrov, Mikhail

2008-01-15

The Multi-Filter Rotating Shadowband Radiometer (MFRSR) makes precise simultaneous measurements of the solar direct normal and diffuse horizontal irradiances at six wavelengths (nominally 415, 500, 615, 673, 870, and 940 nm) at short intervals (20 sec for ARM instruments) throughout the day. Time series of spectral optical depth are derived from these measurements. Besides water vapor at 940 nm, the other gaseous absorbers within the MFRSR channels are NO2 (at 415, 500, and 615 nm) and ozone (at 500, 615, and 670 nm). Aerosols and Rayleigh scattering contribute atmospheric extinction in all MFRSR channels. Our recently updated MFRSR data analysis algorithm allows us to partition the spectral aerosol optical depth into fine and coarse modes and to retrieve the fine mode effective radius. In this approach we rely on climatological amounts of NO2 from SCIAMACHY satellite retrievals and use daily ozone columns from TOMS.

Failure criterion of glass fabric reinforced plastic laminates

NASA Technical Reports Server (NTRS)

Haga, O.; Hayashi, N.; Kasuya, K.

1986-01-01

Failure criteria are derived for several modes of failure (in unaxial tensile or compressive loading, or biaxial combined tensile-compressive loading) in the case of closely woven plain fabric, coarsely-woven plain fabric, or roving glass cloth reinforcements. The shear strength in the interaction formula is replaced by an equation dealing with tensile or compressive strength in the direction making a 45 degree angle with one of the anisotropic axes, for the uniaxial failure criteria. The interaction formula is useful as the failure criterion in combined tension-compression biaxial failure for the case of closely woven plain fabric laminates, but poor agreement is obtained in the case of coarsely woven fabric laminates.

The Renormalization Group and Its Applications to Generating Coarse-Grained Models of Large Biological Molecular Systems.

PubMed

Koehl, Patrice; Poitevin, Frédéric; Navaza, Rafael; Delarue, Marc

2017-03-14

Understanding the dynamics of biomolecules is the key to understanding their biological activities. Computational methods ranging from all-atom molecular dynamics simulations to coarse-grained normal-mode analyses based on simplified elastic networks provide a general framework to studying these dynamics. Despite recent successes in studying very large systems with up to a 100,000,000 atoms, those methods are currently limited to studying small- to medium-sized molecular systems due to computational limitations. One solution to circumvent these limitations is to reduce the size of the system under study. In this paper, we argue that coarse-graining, the standard approach to such size reduction, must define a hierarchy of models of decreasing sizes that are consistent with each other, i.e., that each model contains the information of the dynamics of its predecessor. We propose a new method, Decimate, for generating such a hierarchy within the context of elastic networks for normal-mode analysis. This method is based on the concept of the renormalization group developed in statistical physics. We highlight the details of its implementation, with a special focus on its scalability to large systems of up to millions of atoms. We illustrate its application on two large systems, the capsid of a virus and the ribosome translation complex. We show that highly decimated representations of those systems, containing down to 1% of their original number of atoms, still capture qualitatively and quantitatively their dynamics. Decimate is available as an OpenSource resource.

A Coarse-Grained Elastic Network Atom Contact Model and Its Use in the Simulation of Protein Dynamics and the Prediction of the Effect of Mutations

PubMed Central

Frappier, Vincent; Najmanovich, Rafael J.

2014-01-01

Normal mode analysis (NMA) methods are widely used to study dynamic aspects of protein structures. Two critical components of NMA methods are coarse-graining in the level of simplification used to represent protein structures and the choice of potential energy functional form. There is a trade-off between speed and accuracy in different choices. In one extreme one finds accurate but slow molecular-dynamics based methods with all-atom representations and detailed atom potentials. On the other extreme, fast elastic network model (ENM) methods with Cα−only representations and simplified potentials that based on geometry alone, thus oblivious to protein sequence. Here we present ENCoM, an Elastic Network Contact Model that employs a potential energy function that includes a pairwise atom-type non-bonded interaction term and thus makes it possible to consider the effect of the specific nature of amino-acids on dynamics within the context of NMA. ENCoM is as fast as existing ENM methods and outperforms such methods in the generation of conformational ensembles. Here we introduce a new application for NMA methods with the use of ENCoM in the prediction of the effect of mutations on protein stability. While existing methods are based on machine learning or enthalpic considerations, the use of ENCoM, based on vibrational normal modes, is based on entropic considerations. This represents a novel area of application for NMA methods and a novel approach for the prediction of the effect of mutations. We compare ENCoM to a large number of methods in terms of accuracy and self-consistency. We show that the accuracy of ENCoM is comparable to that of the best existing methods. We show that existing methods are biased towards the prediction of destabilizing mutations and that ENCoM is less biased at predicting stabilizing mutations. PMID:24762569

Using spectral methods to obtain particle size information from optical data: applications to measurements from CARES 2010

NASA Astrophysics Data System (ADS)

Atkinson, Dean B.; Pekour, Mikhail; Chand, Duli; Radney, James G.; Kolesar, Katheryn R.; Zhang, Qi; Setyan, Ari; O'Neill, Norman T.; Cappa, Christopher D.

2018-04-01

Multi-wavelength in situ aerosol extinction, absorption and scattering measurements made at two ground sites during the 2010 Carbonaceous Aerosols and Radiative Effects Study (CARES) are analyzed using a spectral deconvolution method that allows extraction of particle-size-related information, including the fraction of extinction produced by the fine-mode particles and the effective radius of the fine mode. The spectral deconvolution method is typically applied to analysis of remote sensing measurements. Here, its application to in situ measurements allows for comparison with more direct measurement methods and validation of the retrieval approach. Overall, the retrieved fine-mode fraction and effective radius compare well with other in situ measurements, including size distribution measurements and scattering and absorption measurements made separately for PM1 and PM10, although there were some periods during which the different methods yielded different results. One key contributor to differences between the results obtained is the alternative, spectrally based definitions of fine and coarse modes from the optical methods, relative to instruments that use a physically defined cut point. These results indicate that for campaigns where size, composition and multi-wavelength optical property measurements are made, comparison of the results can result in closure or can identify unusual circumstances. The comparison here also demonstrates that in situ multi-wavelength optical property measurements can be used to determine information about particle size distributions in situations where direct size distribution measurements are not available.

Using spectral methods to obtain particle size information from optical data: applications to measurements from CARES 2010

DOE PAGES

Atkinson, Dean B.; Pekour, Mikhail; Chand, Duli; ...

2018-04-23

Here, multi-wavelength in situ aerosol extinction, absorption and scattering measurements made at two ground sites during the 2010 Carbonaceous Aerosols and Radiative Effects Study (CARES) are analyzed using a spectral deconvolution method that allows extraction of particle-size-related information, including the fraction of extinction produced by the fine-mode particles and the effective radius of the fine mode. The spectral deconvolution method is typically applied to analysis of remote sensing measurements. Here, its application to in situ measurements allows for comparison with more direct measurement methods and validation of the retrieval approach. Overall, the retrieved fine-mode fraction and effective radius compare wellmore » with other in situ measurements, including size distribution measurements and scattering and absorption measurements made separately for PM 1 and PM 10, although there were some periods during which the different methods yielded different results. One key contributor to differences between the results obtained is the alternative, spectrally based definitions of fine and coarse modes from the optical methods, relative to instruments that use a physically defined cut point. These results indicate that for campaigns where size, composition and multi-wavelength optical property measurements are made, comparison of the results can result in closure or can identify unusual circumstances. The comparison here also demonstrates that in situ multi-wavelength optical property measurements can be used to determine information about particle size distributions in situations where direct size distribution measurements are not available.« less

Using spectral methods to obtain particle size information from optical data: applications to measurements from CARES 2010

DOE Office of Scientific and Technical Information (OSTI.GOV)

Atkinson, Dean B.; Pekour, Mikhail; Chand, Duli

Here, multi-wavelength in situ aerosol extinction, absorption and scattering measurements made at two ground sites during the 2010 Carbonaceous Aerosols and Radiative Effects Study (CARES) are analyzed using a spectral deconvolution method that allows extraction of particle-size-related information, including the fraction of extinction produced by the fine-mode particles and the effective radius of the fine mode. The spectral deconvolution method is typically applied to analysis of remote sensing measurements. Here, its application to in situ measurements allows for comparison with more direct measurement methods and validation of the retrieval approach. Overall, the retrieved fine-mode fraction and effective radius compare wellmore » with other in situ measurements, including size distribution measurements and scattering and absorption measurements made separately for PM 1 and PM 10, although there were some periods during which the different methods yielded different results. One key contributor to differences between the results obtained is the alternative, spectrally based definitions of fine and coarse modes from the optical methods, relative to instruments that use a physically defined cut point. These results indicate that for campaigns where size, composition and multi-wavelength optical property measurements are made, comparison of the results can result in closure or can identify unusual circumstances. The comparison here also demonstrates that in situ multi-wavelength optical property measurements can be used to determine information about particle size distributions in situations where direct size distribution measurements are not available.« less

Using spectral methods to obtain particle size information from optical data: applications to measurements from CARES 2010

DOE Office of Scientific and Technical Information (OSTI.GOV)

Atkinson, Dean B.; Pekour, Mikhail; Chand, Duli

Multi-wavelength in situ aerosol extinction, absorption and scattering measurements made at two ground sites during the 2010 Carbonaceous Aerosols and Radiative Effects Study (CARES) are analyzed using a spectral deconvolution method that allows extraction of particle-size-related information, including the fraction of extinction produced by the fine-mode particles and the effective radius of the fine mode. The spectral deconvolution method is typically applied to analysis of remote sensing measurements. Here, its application to in situ measurements allows for comparison with more direct measurement methods and validation of the retrieval approach. Overall, the retrieved fine-mode fraction and effective radius compare well withmore » other in situ measurements, including size distribution measurements and scattering and absorption measurements made separately for PM 1 and PM 10, although there were some periods during which the different methods yielded different results. One key contributor to differences between the results obtained is the alternative, spectrally based definitions of fine and coarse modes from the optical methods, relative to instruments that use a physically defined cut point. These results indicate that for campaigns where size, composition and multi-wavelength optical property measurements are made, comparison of the results can result in closure or can identify unusual circumstances. The comparison here also demonstrates that in situ multi-wavelength optical property measurements can be used to determine information about particle size distributions in situations where direct size distribution measurements are not available.« less

Spectral Discrimination of Fine and Coarse Mode Aerosol Optical Depth from AERONET Direct Sun Data of Singapore and South-East Asia

NASA Astrophysics Data System (ADS)

Salinas Cortijo, S.; Chew, B.; Liew, S.

2009-12-01

Aerosol optical depth combined with the Angstrom exponent and its derivative, are often used as a qualitative indicator of aerosol particle size, with Angstrom exp. values greater than 2 indicating small (fine mode) particles associated with urban pollution and bio-mass burning. Around this region, forest fires are a regular occurrence during the dry season, specially near the large land masses of Sumatra and Borneo. The practice of clearing land by burning the primary and sometimes secondary forest, results in a smog-like haze covering large areas of regional cities such as cities Singapore, Kuala Lumpur and sometimes the south of Thailand, often reducing visibility and increasing health problems for the local population. In Singapore, the sources of aerosols are mostly from fossil fuel burning (energy stations, incinerators, urban transport etc.) and from the industrial and urban areas. The proximity to the sea adds a possible oceanic source. However, as stated above and depending on the time of the year, there can be a strong bio-mass component coming from forest fires from various regions of the neighboring countries. Bio-mass related aerosol particles are typically characterized by showing a large optical depth and small, sub-micron particle size distributions. In this work, we analyze three years of direct Sun measurements performed with a multi-channel Cimel Sun-Photometer (part of the AERONET network) located at our site. In order to identify bio-mass burning events in this region, we perform a spectral discrimination between coarse and fine mode optical depth; subsequently, the fine mode parameters such as optical depth, optical ratio and fine mode Angstrom exponents (and its derivative) are used to identify possible bio-mass related events within the data set.

Role of translational entropy in spatially inhomogeneous, coarse-grained models

NASA Astrophysics Data System (ADS)

Langenberg, Marcel; Jackson, Nicholas E.; de Pablo, Juan J.; Müller, Marcus

2018-03-01

Coarse-grained models of polymer and biomolecular systems have enabled the computational study of cooperative phenomena, e.g., self-assembly, by lumping multiple atomistic degrees of freedom along the backbone of a polymer, lipid, or DNA molecule into one effective coarse-grained interaction center. Such a coarse-graining strategy leaves the number of molecules unaltered. In order to treat the surrounding solvent or counterions on the same coarse-grained level of description, one can also stochastically group several of those small molecules into an effective, coarse-grained solvent bead or "fluid element." Such a procedure reduces the number of molecules, and we discuss how to compensate the concomitant loss of translational entropy by density-dependent interactions in spatially inhomogeneous systems.

Coarse graining for synchronization in directed networks

NASA Astrophysics Data System (ADS)

Zeng, An; Lü, Linyuan

2011-05-01

Coarse-graining model is a promising way to analyze and visualize large-scale networks. The coarse-grained networks are required to preserve statistical properties as well as the dynamic behaviors of the initial networks. Some methods have been proposed and found effective in undirected networks, while the study on coarse-graining directed networks lacks of consideration. In this paper we proposed a path-based coarse-graining (PCG) method to coarse grain the directed networks. Performing the linear stability analysis of synchronization and numerical simulation of the Kuramoto model on four kinds of directed networks, including tree networks and variants of Barabási-Albert networks, Watts-Strogatz networks, and Erdös-Rényi networks, we find our method can effectively preserve the network synchronizability.

Processing of aerosol particles within the Habshan pollution plume

NASA Astrophysics Data System (ADS)

Semeniuk, T. A.; Bruintjes, R.; Salazar, V.; Breed, D.; Jensen, T.; Buseck, P. R.

2015-03-01

The Habshan industrial site in the United Arab Emirates produces a regional-scale pollution plume associated with oil and gas processing, discharging high loadings of sulfates and chlorides into the atmosphere, which interact with the ambient aerosol population. Aerosol particles and trace gas chemistry at this site were studied on two flights in the summer of 2002. Measurements were collected along vertical plume profiles to show changes associated with atmospheric processing of particle and gas components. Close to the outlet stack, particle concentrations were over 10,000 cm-3, dropping to <2000 cm-3 in more dilute plume around 1500 m above the stack. Particles collected close to the stack and within the dilute plume were individually measured for size, morphology, composition, and mixing state using transmission electron microscopy coupled with energy-dispersive X-ray spectroscopy. Close to the stack, most coarse particles consisted of mineral dust and NaCl crystals from burning oil brines, while sulfate droplets dominated the fine mode. In more dilute plume, at least 1500 m above the stack, the particle spectrum was more diverse, with a significant increase in internally mixed particle types. Dilute plume samples consisted of coarse NaCl/silicate aggregates or NaCl-rich droplets, often with a sulfate component, while fine-fraction particles were of mixed cation sulfates, also internally mixed with nanospherical soot or silicates. Thus, both chloride and sulfate components of the pollution plume rapidly reacted with ambient mineral dust to form coated and aggregate particles, enhancing particle size, hygroscopicity, and reactivity of the coarse mode. The fine-fraction sulfate-bearing particles formed in the plume contribute to regional transport of sulfates, while coarse sulfate-bearing fractions locally reduced the SO2 loading through sedimentation. The chloride- and sulfate-bearing internally mixed particles formed in the plume markedly changed the reflectivity and scattering properties of the ambient aerosol population, as well as its hygroscopic and ice nucleation properties.

Variability of Mediterranean aerosols properties at three regional background sites in the western Mediterranean Basin

NASA Astrophysics Data System (ADS)

Sicard, Michaël.; Totems, Julien; Barragan, Rubén.; Dulac, François; Mallet, Marc; Comerón, Adolfo; Alados-Arboledas, Lucas; Augustin, Patrick; Chazette, Patrick; Léon, Jean-François; Olmo-Reyes, Francisco José; Renard, Jean-Baptiste; Rocadenbosch, Francesc

2014-10-01

In the framework of the project ChArMEx (the Chemistry-Aerosol Mediterranean Experiment, http://charmex.lsce.ipsl.fr/), the variability of aerosol optical, microphysical and radiative properties is examined in three regional background sites on a southwest - northeast (SW-NE) straight line in the middle of the western Mediterranean Basin (WMB). The three sites are on the northward transport pathway of African dust: - Ersa, Corsica Island, France (43.00ºN, 9.36ºW, 80 m a.s.l), - Palma de Mallorca, Mallorca Island, Spain (39.55ºN, 2.62ºE, 10 m a.s.l) and - Alborán, Alboran Island, Spain (35.94ºN, 3.04ºW, 15 m a.s.l). AERONET (AErosol RObotic NETwork) sun-photometer products are mainly used. A preliminary analysis shows that at Ersa and Palma sites the annual aerosol optical depth (AOD) has a similar trend with a peak around 0.2 in July. The winter/spring AOD is lower in Palma than in Ersa, while it is reverse in summer/autumn. The aerosol particle size distribution (and the coarse mode fraction) shows clearly the SW-NE gradient with a decreasing coarse mode peak (and a decreasing coarse mode fraction from 0.5 - 0.35 - 0.2 in July) along the axis Alborán - Palma de Mallorca - Ersa. In addition to the seasonal and annual variability analysis, the analysis of AERONET products is completed with a large variety of ground-based and sounding balloons remote sensing and in situ instruments during the Special Observation Period (SOP) of the ADRIMED campaign in June 2013. The second part of the presentation will focus on the comparison of the observations at Palma de Mallorca and Ersa of the same long-range transported airmasses. The observations include lidar vertical profiles, balloon borne OPC (Optical Particle Counter) and MSG/SEVIRI AOD, among others.

A constraint-logic based implementation of the coarse-grained approach to data acquisition scheduling of the International Ultraviolet Explorer orbiting observatory

NASA Technical Reports Server (NTRS)

Mccollum, Bruce; Graves, Mark

1994-01-01

The International Ultraviolet Explorer (IUE) satellite observatory has been in operation continuously since 1978. It typically carries out several thousand observations per year for over a hundred different science projects. These observations, which can occur in one of four different data-taking modes, fall under several satellite-related constraints and many other constraints which derive from the science goals of the projects being undertaken. One strategy which has made the scheduling problem tractable has been that of 'coarse-graining' the time into discrete blocks of equal size (8 hours), each of which is devoted to a single science program, and each of which is sufficiently long for several observations to be carried out. We call it 'coarse-graining' because the schedule is done at a 'coarse' level which ignores fine structure; i.e., no attempt is made to plan the sequence of observations occurring within each time block. We have incorporated the IUE's coarse-grained approach in new software which examines the science needs of the observations and produces a limited set of alternative schedules which meet all of the instrument and science-related constraints. With this algorithm, the IUE can still be scheduled by a single person using a standard workstation, as it has been. We believe that this software could could be adapted to a more complex mission while retaining the IUE's high flexibility and efficiency and scientific return of future satellite missions.

A comparative study of coarse-graining methods for polymeric fluids: Mori-Zwanzig vs. iterative Boltzmann inversion vs. stochastic parametric optimization

NASA Astrophysics Data System (ADS)

Li, Zhen; Bian, Xin; Yang, Xiu; Karniadakis, George Em

2016-07-01

We construct effective coarse-grained (CG) models for polymeric fluids by employing two coarse-graining strategies. The first one is a forward-coarse-graining procedure by the Mori-Zwanzig (MZ) projection while the other one applies a reverse-coarse-graining procedure, such as the iterative Boltzmann inversion (IBI) and the stochastic parametric optimization (SPO). More specifically, we perform molecular dynamics (MD) simulations of star polymer melts to provide the atomistic fields to be coarse-grained. Each molecule of a star polymer with internal degrees of freedom is coarsened into a single CG particle and the effective interactions between CG particles can be either evaluated directly from microscopic dynamics based on the MZ formalism, or obtained by the reverse methods, i.e., IBI and SPO. The forward procedure has no free parameters to tune and recovers the MD system faithfully. For the reverse procedure, we find that the parameters in CG models cannot be selected arbitrarily. If the free parameters are properly defined, the reverse CG procedure also yields an accurate effective potential. Moreover, we explain how an aggressive coarse-graining procedure introduces the many-body effect, which makes the pairwise potential invalid for the same system at densities away from the training point. From this work, general guidelines for coarse-graining of polymeric fluids can be drawn.

A comparative study of coarse-graining methods for polymeric fluids: Mori-Zwanzig vs. iterative Boltzmann inversion vs. stochastic parametric optimization.

PubMed

Li, Zhen; Bian, Xin; Yang, Xiu; Karniadakis, George Em

2016-07-28

We construct effective coarse-grained (CG) models for polymeric fluids by employing two coarse-graining strategies. The first one is a forward-coarse-graining procedure by the Mori-Zwanzig (MZ) projection while the other one applies a reverse-coarse-graining procedure, such as the iterative Boltzmann inversion (IBI) and the stochastic parametric optimization (SPO). More specifically, we perform molecular dynamics (MD) simulations of star polymer melts to provide the atomistic fields to be coarse-grained. Each molecule of a star polymer with internal degrees of freedom is coarsened into a single CG particle and the effective interactions between CG particles can be either evaluated directly from microscopic dynamics based on the MZ formalism, or obtained by the reverse methods, i.e., IBI and SPO. The forward procedure has no free parameters to tune and recovers the MD system faithfully. For the reverse procedure, we find that the parameters in CG models cannot be selected arbitrarily. If the free parameters are properly defined, the reverse CG procedure also yields an accurate effective potential. Moreover, we explain how an aggressive coarse-graining procedure introduces the many-body effect, which makes the pairwise potential invalid for the same system at densities away from the training point. From this work, general guidelines for coarse-graining of polymeric fluids can be drawn.

Sorted bedform pattern evolution: Persistence, destruction and self-organized intermittency

NASA Astrophysics Data System (ADS)

Goldstein, Evan B.; Murray, A. Brad; Coco, Giovanni

2011-12-01

We investigate the long-term evolution of inner continental shelf sorted bedform patterns. Numerical modeling suggests that a range of behaviors are possible, from pattern persistence to spatial-temporal intermittency. Sorted bedform persistence results from a robust sorting feedback that operates when the seabed features a sufficient concentration of coarse material. In the absence of storm events, pattern maturation processes such as defect dynamics and pattern migration tend to cause the burial of coarse material and excavation of fine material, leading to the fining of the active layer. Vertical sorting occurs until a critical state of active layer coarseness is reached. This critical state results in the local cessation of the sorting feedback, leading to a self-organized spatially intermittent pattern, a hallmark of observed sorted bedforms. Bedforms in shallow conditions and those subject to high wave climates may be temporally intermittent features as a result of increased wave orbital velocity during storms. Erosion, or deposition of bimodal sediment, similarly leads to a spatially intermittent pattern, with individual coarse domains exhibiting temporal intermittence. Recurring storm events cause coarsening of the seabed (strengthening the sorting feedback) and the development of large wavelength patterns. Cessation of storm events leads to the superposition of storm (large wavelength) and inter-storm (small wavelength) patterns and spatial heterogeneity of pattern modes.

Testing for entanglement with periodic coarse graining

NASA Astrophysics Data System (ADS)

Tasca, D. S.; Rudnicki, Łukasz; Aspden, R. S.; Padgett, M. J.; Souto Ribeiro, P. H.; Walborn, S. P.

2018-04-01

Continuous-variable systems find valuable applications in quantum information processing. To deal with an infinite-dimensional Hilbert space, one in general has to handle large numbers of discretized measurements in tasks such as entanglement detection. Here we employ the continuous transverse spatial variables of photon pairs to experimentally demonstrate entanglement criteria based on a periodic structure of coarse-grained measurements. The periodization of the measurements allows an efficient evaluation of entanglement using spatial masks acting as mode analyzers over the entire transverse field distribution of the photons and without the need to reconstruct the probability densities of the conjugate continuous variables. Our experimental results demonstrate the utility of the derived criteria with a success rate in entanglement detection of ˜60 % relative to 7344 studied cases.

Raman lidar observations of a Saharan dust outbreak event: Characterization of the dust optical properties and determination of particle size and microphysical parameters

NASA Astrophysics Data System (ADS)

Di Girolamo, Paolo; Summa, Donato; Bhawar, Rohini; Di Iorio, Tatiana; Cacciani, Marco; Veselovskii, Igor; Dubovik, Oleg; Kolgotin, Alexey

2012-04-01

The Raman lidar system BASIL was operational in Achern (Black Forest) between 25 May and 30 August 2007 in the framework of the Convective and Orographically-induced Precipitation Study (COPS). The system performed continuous measurements over a period of approx. 36 h from 06:22 UTC on 1 August to 18:28 UTC on 2 August 2007, capturing the signature of a severe Saharan dust outbreak episode. The data clearly reveal the presence of two almost separate aerosol layers: a lower layer located between 1.5 and 3.5 km above ground level (a.g.l.) and an upper layer extending between 3.0 and 6.0 km a.g.l. The time evolution of the dust cloud is illustrated and discussed in the paper in terms of several optical parameters (particle backscatter ratio at 532 and 1064 nm, the colour ratio and the backscatter Angström parameter). An inversion algorithm was used to retrieve particle size and microphysical parameters, i.e., mean and effective radius, number, surface area, volume concentration, and complex refractive index, as well as the parameters of a bimodal particle size distribution (PSD), from the multi-wavelength lidar data of particle backscattering, extinction and depolarization. The retrieval scheme employs Tikhonov's inversion with regularization and makes use of kernel functions for randomly oriented spheroids. Size and microphysical parameters of dust particles are estimated as a function of altitude at different times during the dust outbreak event. Retrieval results reveal the presence of a fine mode with radii of 0.1-0.2 μm and a coarse mode with radii of 3-5 μm both in the lower and upper dust layers, and the dominance in the upper dust layer of a coarse mode with radii of 4-5 μm. Effective radius varies with altitude in the range 0.1-1.5 μm, while volume concentration is found to not exceed 92 μm3 cm-3. The real and imaginary part of the complex refractive index vary in the range 1.4-1.6 and 0.004-0.008, respectively.

The aerosol optical properties and PM2.5 components over the world's largest industrial zone in Tangshan, North China

NASA Astrophysics Data System (ADS)

Zhang, Kequan; Ma, Yongjing; Xin, Jinyuan; Liu, Zirui; Ma, Yining; Gao, Dongdong; Wu, Junsong; Zhang, Wenyu; Wang, Yuesi; Shen, Pengke

2018-03-01

To achieve an in-depth understanding of the aerosol optical properties in the highly-industrial region of Tangshan, we provided systematic aerosol optical properties analysis in this largest industrial zone for the first time. The aerosol optical datasets (2013.05-2015.04) and chemical component data of PM2.5 (2014-2015) obtained from the Tangshan site of the campaign on atmospheric aerosol research (CARE-China) network were analyzed. The results showed that the Tangshan region was seriously affected by fine-mode industrial aerosols all year, which would promote the accumulation of pollutants and influence the atmospheric circulation through changing the vertical temperature gradient. The annual average aerosol optical depth (AOD) and Ångstrӧm exponent (α) were 0.80 ± 0.26 and 1.05 ± 0.10, respectively. The aerosol optical properties revealed significant seasonal characteristics. The maximum seasonal average AOD (1.03 ± 0.62) and α (1.12 ± 0.19) accompanied the highest seasonal secondary inorganic aerosol concentrations (SIA: SO42 -, NO3-, NH4+), 53.33 μg/m3, occurred in summer, and this phenomenon was attributed to the photochemical reactions favored by the high temperature and humidity. During the spring, frequent dust events led to the maximum Ca2 + concentration of 6.57 μg/m3 and the lowest seasonal α of 0.98 ± 0.31. Coal was used for generating heat in winter, resulting in the highest levels of pollutant emissions (Cl-, Elemental carbon (EC) and organic carbon (OC)). The aerosol type classifications showed that the industrial aerosols were the main controls in the summer and fall, representing 56%-58% of the total aerosols. While for spring and winter, mixed aerosols represented 53%-54% of the total aerosols. Hygroscopic growth effect of aerosols existed all year, which could enhance the negative radiative forcing and eventually cool the earth-atmosphere system. The classification Wing for Tangshan data showed high AOD values (> 0.70) were mainly clustered in the fine-mode growth wing and coarse-mode. Of these values, summer showed a dense AOD distribution and the highest magnitude of fine-mode AODs, with a corresponding fine particle fraction of η 90% and an Rf 0.20 μm. In addition, spring showed the most coarse-mode aerosols.

Effects of cholesterol on pore formation in lipid bilayers induced by human islet amyloid polypeptide fragments: A coarse-grained molecular dynamics study

NASA Astrophysics Data System (ADS)

Xu, Weixin; Wei, Guanghong; Su, Haibin; Nordenskiöld, Lars; Mu, Yuguang

2011-11-01

Disruption of the cellular membrane by the amyloidogenic peptide, islet amyloid polypeptide (IAPP), has been considered as one of the mechanisms of β-cell death during type 2 diabetes. The N-terminal region (residues 1-19) of the human version of IAPP is suggested to be primarily responsible for the membrane-disrupting effect of the full-length hIAPP peptide. However, the detailed assembly mode of hIAPP1-19 with membrane remains unclear. To gain insight into the interactions of hIAPP1-19 oligomer with the model membrane, we have employed coarse-grained molecular dynamics self-assembly simulations to study the aggregation of hIAPP1-19 fragments in the binary lipid made of zwitterionic dipalmitoylphosphatidylcholine (DPPC) and anionic dipalmitoylphosphatidylserine (DPPS) in the presence and absence of different levels of cholesterol content. The membrane-destabilizing effect of hIAPP1-19 is found to be modulated by the presence of cholesterol. In the absence of cholesterol, hIAPP1-19 aggregates prefer to locate inside the bilayer, forming pore-like assemblies. While in the presence of cholesterol molecules, the lipid bilayer becomes more ordered and stiff, and the hIAPP1-19 aggregates are dominantly positioned at the bilayer-water interface. The action of cholesterol may suggest a possible way to maintain the membrane integrity by small molecule interference.

Stochastic entangled chain dynamics of dense polymer solutions.

PubMed

Kivotides, Demosthenes; Wilkin, S Louise; Theofanous, Theo G

2010-10-14

We propose an adjustable-parameter-free, entangled chain dynamics model of dense polymer solutions. The model includes the self-consistent dynamics of molecular chains and solvent by describing the former via coarse-grained polymer dynamics that incorporate hydrodynamic interaction effects, and the latter via the forced Stokes equation. Real chain elasticity is modeled via the inclusion of a Pincus regime in the polymer's force-extension curve. Excluded volume effects are taken into account via the combined action of coarse-grained intermolecular potentials and explicit geometric tracking of chain entanglements. We demonstrate that entanglements are responsible for a new (compared to phantom chain dynamics), slow relaxation mode whose characteristic time scale agrees very well with experiment. Similarly good agreement between theory and experiment is also obtained for the equilibrium chain size. We develop methods for the solution of the model in periodic flow domains and apply them to the computation of entangled polymer solutions in equilibrium. We show that the number of entanglements Π agrees well with the number of entanglements expected on the basis of tube theory, satisfactorily reproducing the latter's scaling of Π with the polymer volume fraction φ. Our model predicts diminishing chain size with concentration, thus vindicating Flory's suggestion of excluded volume effects screening in dense solutions. The predicted scaling of chain size with φ is consistent with the heuristic, Flory theory based value.

Evolution of aerosol chemistry in Xi'an, inland China, during the dust storm period of 2013 - Part 1: Sources, chemical forms and formation mechanisms of nitrate and sulfate

NASA Astrophysics Data System (ADS)

Wang, G. H.; Cheng, C. L.; Huang, Y.; Tao, J.; Ren, Y. Q.; Wu, F.; Meng, J. J.; Li, J. J.; Cheng, Y. T.; Cao, J. J.; Liu, S. X.; Zhang, T.; Zhang, R.; Chen, Y. B.

2014-11-01

A total suspended particulate (TSP) sample was collected hourly in Xi'an, an inland megacity of China near the Loess Plateau, during a dust storm event of 2013 (9 March 18:00-12 March 10:00 LT), along with a size-resolved aerosol sampling and an online measurement of PM2.5. The TSP and size-resolved samples were determined for elemental carbon (EC), organic carbon (OC), water-soluble organic carbon (WSOC) and nitrogen (WSON), inorganic ions and elements to investigate chemistry evolution of dust particles. Hourly concentrations of Cl-, NO3-, SO42-, Na+ and Ca2+ in the TSP samples reached up to 34, 12, 180, 72 and 28 μg m-3, respectively, when dust peak arrived over Xi'an. Chemical compositions of the TSP samples showed that during the whole observation period NH4+ and NO3- were linearly correlated with each other (r2=0.76) with a molar ratio of 1 : 1, while SO42- and Cl- were well correlated with Na+, Ca2+, Mg2+ and K+ (r2 > 0.85). Size distributions of NH4+ and NO3- presented a same pattern, which dominated in the coarse mode (> 2.1 μm) during the event and predominated in the fine mode (< 2.1 μm) during the non-event. SO42- and Cl- also dominated in the coarse mode during the event hours, but both exhibited two equivalent peaks in both the fine and the coarse modes during the non-event, due to the fine-mode accumulations of secondarily produced SO42- and biomass-burning-emitted Cl- and the coarse-mode enrichments of urban soil-derived SO42- and Cl-. Linear fit regression analysis further indicated that SO42- and Cl- in the dust samples possibly exist as Na2SO4, CaSO4 and NaCl, which directly originated from Gobi desert surface soil, while NH4+ and NO3- in the dust samples exist as NH4NO3. We propose a mechanism to explain these observations in which aqueous phase of dust particle surface is formed via uptake of water vapor by hygroscopic salts such as Na2SO4 and NaCl, followed by heterogeneous formation of nitrate on the liquid phase and subsequent absorption of ammonia. Our data indicate that 54 ± 20% and 60 ± 23% of NH4+ and NO3- during the dust period were secondarily produced via this pathway, with the remaining derived from the Gobi desert and Loess Plateau, while SO42- in the event almost entirely originated from the desert regions. Such cases are different from those in the East Asian continental outflow region, where during Asia dust storm events SO42- is secondarily produced and concentrates in sub-micrometer particles as (NH4)2SO4 and/or NH4HSO4. To the best of our knowledge, the current work for the first time revealed an infant state of the East Asian dust ageing process in the regions near the source, which is helpful for researchers to understand the panorama of East Asian dust ageing process from the desert area to the downwind region.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Li, Zhen; Bian, Xin; Yang, Xiu

We construct effective coarse-grained (CG) models for polymeric fluids by employing two coarse-graining strategies. The first one is a forward-coarse-graining procedure by the Mori-Zwanzig (MZ) projection while the other one applies a reverse-coarse-graining procedure, such as the iterative Boltzmann inversion (IBI) and the stochastic parametric optimization (SPO). More specifically, we perform molecular dynamics (MD) simulations of star polymer melts to provide the atomistic fields to be coarse-grained. Each molecule of star polymer with internal degrees of freedom is coarsened into a single CG particle and the effective interactions between CG particles can be either evaluated directly from microscopic dynamics basedmore » on the MZ formalism, or obtained by the reverse methods, i.e., IBI and SPO. The forward procedure has no free parameters to tune and recovers the MD system faithfully. For the reverse procedure, we find that the parameters in CG models are not interchangeable. If the free parameters are properly selected, the reverse CG procedure also yields an effective potential. Moreover, we explain how an aggressive coarse-graining procedure introduces many-body effect, which makes the pairwise potential invalid for the same system at densities away from the training point. From this work, general guidelines for coarse-graining of polymeric fluids can be drawn.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Li, Zhen; Bian, Xin; Karniadakis, George Em, E-mail: george-karniadakis@brown.edu

We construct effective coarse-grained (CG) models for polymeric fluids by employing two coarse-graining strategies. The first one is a forward-coarse-graining procedure by the Mori-Zwanzig (MZ) projection while the other one applies a reverse-coarse-graining procedure, such as the iterative Boltzmann inversion (IBI) and the stochastic parametric optimization (SPO). More specifically, we perform molecular dynamics (MD) simulations of star polymer melts to provide the atomistic fields to be coarse-grained. Each molecule of a star polymer with internal degrees of freedom is coarsened into a single CG particle and the effective interactions between CG particles can be either evaluated directly from microscopic dynamicsmore » based on the MZ formalism, or obtained by the reverse methods, i.e., IBI and SPO. The forward procedure has no free parameters to tune and recovers the MD system faithfully. For the reverse procedure, we find that the parameters in CG models cannot be selected arbitrarily. If the free parameters are properly defined, the reverse CG procedure also yields an accurate effective potential. Moreover, we explain how an aggressive coarse-graining procedure introduces the many-body effect, which makes the pairwise potential invalid for the same system at densities away from the training point. From this work, general guidelines for coarse-graining of polymeric fluids can be drawn.« less

Size distribution, characteristics and sources of heavy metals in haze episode in Beijing.

PubMed

Duan, Jingchun; Tan, Jihua; Hao, Jiming; Chai, Fahe

2014-01-01

Size segragated samples were collected during high polluted winter haze days in 2006 in Beijing, China. Twenty nine elements and 9 water soluble ions were determined. Heavy metals of Zn, Pb, Mn, Cu, As, Cr, Ni, V and Cd were deeply studied considering their toxic effect on human being. Among these heavy metals, the levels of Mn, As and Cd exceeded the reference values of National Ambient Air Quality Standard (GB3095-2012) and guidelines of World Health Organization. By estimation, high percentage of atmospheric heavy metals in PM2.5 indicates it is an effective way to control atmospheric heavy metals by PM2.5 controlling. Pb, Cd, and Zn show mostly in accumulation mode, V, Mn and Cu exist mostly in both coarse and accumulation modes, and Ni and Cr exist in all of the three modes. Considering the health effect, the breakthrough rates of atmospheric heavy metals into pulmonary alveoli are: Pb (62.1%) > As (58.1%) > Cd (57.9%) > Zn (57.7%) > Cu (55.8%) > Ni (53.5%) > Cr (52.2%) > Mn (49.2%) > V (43.5%). Positive matrix factorization method was applied for source apportionment of studied heavy metals combined with some marker elements and ions such as K, As, SO4(2-) etc., and four factors (dust, vehicle, aged and transportation, unknown) are identified and the size distribution contribution of them to atmospheric heavy metals are discussed.

Investigating the Use of a Simplified Aerosol Parameterization in Space-Based XCO2 Retrievals from OCO-2

NASA Astrophysics Data System (ADS)

Nelson, R. R.; O'Dell, C.

2017-12-01

The primary goal of OCO-2 is to use hyperspectral measurements of reflected near-infrared sunlight to retrieve the column-averaged dry-air mole fraction of carbon dioxide (XCO2) with high accuracy. This is only possible for measurements of scenes nearly free of optically thick clouds and aerosols. As some cloud or aerosol contamination will always be present, the OCO-2 retrieval algorithm includes clouds and aerosols as retrieved properties in its state vector. Information content analyses demonstrate that there are only 2-6 pieces of information about aerosols in the OCO-2 radiances. However, the upcoming OCO-2 algorithm (B8) attempts to retrieve 9 aerosol parameters; this over-fitting can hinder convergence and produce multiple solutions. In this work, we develop a simplified cloud and aerosol parameterization that intelligently reduces the number of retrieved parameters to 5 by only retrieving information about two aerosol layers: a lower tropospheric layer and an upper tropospheric / stratospheric layer. We retrieve the optical depth of each layer and the height of the lower tropospheric layer. Each of these layers contains a mixture of fine and coarse mode aerosol. In comparisons between OCO-2 XCO2 estimates and validation sources including TCCON, this scheme performs about as well as the more complicated OCO-2 retrieval algorithm, but has the potential benefits of more interpretable aerosol results, faster convergence, less nonlinearity, and greater throughput. We also investigate the dependence of our results on the optical properties of the fine and coarse mode aerosol types, such as their effective radii and the environmental relative humidity.

Atomistic modeling of the low-frequency mechanical modes and Raman spectra of icosahedral virus capsids

NASA Astrophysics Data System (ADS)

Dykeman, Eric C.; Sankey, Otto F.

2010-02-01

We describe a technique for calculating the low-frequency mechanical modes and frequencies of a large symmetric biological molecule where the eigenvectors of the Hessian matrix are determined with full atomic detail. The method, which follows order N methods used in electronic structure theory, determines the subset of lowest-frequency modes while using group theory to reduce the complexity of the problem. We apply the method to three icosahedral viruses of various T numbers and sizes; the human viruses polio and hepatitis B, and the cowpea chlorotic mottle virus, a plant virus. From the normal-mode eigenvectors, we use a bond polarizability model to predict a low-frequency Raman scattering profile for the viruses. The full atomic detail in the displacement patterns combined with an empirical potential-energy model allows a comparison of the fully atomic normal modes with elastic network models and normal-mode analysis with only dihedral degrees of freedom. We find that coarse-graining normal-mode analysis (particularly the elastic network model) can predict the displacement patterns for the first few (˜10) low-frequency modes that are global and cooperative.

Aerosol optical properties and direct radiative forcing based on measurements from the China Aerosol Remote Sensing Network (CARSNET) in eastern China

NASA Astrophysics Data System (ADS)

Che, Huizheng; Qi, Bing; Zhao, Hujia; Xia, Xiangao; Eck, Thomas F.; Goloub, Philippe; Dubovik, Oleg; Estelles, Victor; Cuevas-Agulló, Emilio; Blarel, Luc; Wu, Yunfei; Zhu, Jun; Du, Rongguang; Wang, Yaqiang; Wang, Hong; Gui, Ke; Yu, Jie; Zheng, Yu; Sun, Tianze; Chen, Quanliang; Shi, Guangyu; Zhang, Xiaoye

2018-01-01

Aerosol pollution in eastern China is an unfortunate consequence of the region's rapid economic and industrial growth. Here, sun photometer measurements from seven sites in the Yangtze River Delta (YRD) from 2011 to 2015 were used to characterize the climatology of aerosol microphysical and optical properties, calculate direct aerosol radiative forcing (DARF) and classify the aerosols based on size and absorption. Bimodal size distributions were found throughout the year, but larger volumes and effective radii of fine-mode particles occurred in June and September due to hygroscopic growth and/or cloud processing. Increases in the fine-mode particles in June and September caused AOD440 nm > 1.00 at most sites, and annual mean AOD440 nm values of 0.71-0.76 were found at the urban sites and 0.68 at the rural site. Unlike northern China, the AOD440 nm was lower in July and August (˜ 0.40-0.60) than in January and February (0.71-0.89) due to particle dispersion associated with subtropical anticyclones in summer. Low volumes and large bandwidths of both fine-mode and coarse-mode aerosol size distributions occurred in July and August because of biomass burning. Single-scattering albedos at 440 nm (SSA440 nm) from 0.91 to 0.94 indicated particles with relatively strong to moderate absorption. Strongly absorbing particles from biomass burning with a significant SSA wavelength dependence were found in July and August at most sites, while coarse particles in March to May were mineral dust. Absorbing aerosols were distributed more or less homogeneously throughout the region with absorption aerosol optical depths at 440 nm ˜ 0.04-0.06, but inter-site differences in the absorption Angström exponent indicate a degree of spatial heterogeneity in particle composition. The annual mean DARF was -93 ± 44 to -79 ± 39 W m-2 at the Earth's surface and ˜ -40 W m-2 at the top of the atmosphere (for the solar zenith angle range of 50 to 80°) under cloud-free conditions. The fine mode composed a major contribution of the absorbing particles in the classification scheme based on SSA, fine-mode fraction and extinction Angström exponent. This study contributes to our understanding of aerosols and regional climate/air quality, and the results will be useful for validating satellite retrievals and for improving climate models and remote sensing algorithms.

Columnar and ground-level aerosol optical properties: sensitivity to the transboundary pollution, daily and weekly patterns, and relationships.

PubMed

Perrone, M R; Romano, S; Orza, J A G

2015-11-01

Columnar and ground-level aerosol optical properties co-located in space and time and retrieved from sun/sky photometer and nephelometer measurements, respectively, have been analyzed to investigate the impact of local and transboundary pollution, to analyze their relationships, and hence to contribute to the aerosol load characterization over the Central Mediterranean. The aerosol optical depth (AOD) at 440 nm, the Ångström exponent (Å) calculated from the AOD at 440 and 675 nm, and the asymmetry parameter (g col ) at 440 nm represent the investigated columnar aerosol parameters. The scattering coefficient (σ p) at 450 nm, the scattering Ångström exponent (å) calculated from σ p at 450 and 635 nm, and the asymmetry parameter (g) at 450 nm are the corresponding ground-level parameters. It is shown that the columnar and ground-level aerosol properties were significantly and similarly affected by the main airflows identified with backtrajectory cluster analysis. The yearly averaged daily evolution of σ p, å, and g was fairly correlated to the one of the AOD, Å, and g col , respectively. These results indicate that the aerosol particles were on average characterized by similar yearly averaged optical properties up to the ground level. In particular, the yearly means of columnar and ground-level Ångström exponents, 1.3 ± 0.4 and 1.1 ± 0.4, respectively, which are close to one, reveal a coarse-mode aerosol contribution in addition to the fine-mode particle contribution up to the ground level. Hourly means, day-by-day, and seasonal daily patterns of ground-level parameters were, however, very weakly correlated with the corresponding columnar parameters. The large impact of the local meteorology on the daily evolution of the ground-level aerosol properties, which makes the impact of long-range transported particles less apparent, was mainly responsible for these last results. It has also been found that columnar Ångström exponents much smaller than one may not be linked to å values smaller than 1. This may occurs when coarse-mode particle plumes, advected at high altitudes, do not penetrate inside the planetary boundary layer. Ångström exponents smaller than 1 are due to a significant contribution of coarse-mode particles as dust particles. Therefore, it is shown that å represents one of the best parameters to infer the contribution of coarse-mode particles at the ground level. The daily evolution of the aerosol properties referring to working days (Monday to Friday) and Sunday and the weekly cycle have suggested that the aerosol source contributions varied during the weekends. In particular, the AOD was characterized by a negative weekly cycle (higher AOD values during the weekend than during the weekdays), the Sunday σ p daily mean was 11 % larger than the Monday value, and å reached the highest value on Sunday. The impact up to the ground level of the weekdays' transboundary pollution, which reaches the monitoring site during the weekends, has likely contributed to these results.

Experimental Investigation on Damping Property of Coarse Aggregate Replaced Rubber Concrete

NASA Astrophysics Data System (ADS)

Sugapriya, P.; Ramkrishnan, R.; Keerthana, G.; Saravanamurugan, S.

2018-02-01

Rubber has good damping and vibrational characteristics and can reduce cracking significantly due to its elastic nature. This property of rubber can be incorporated in concrete to control vibrations and create better pavements. Crumb Rubber on being dumped in landfills has serious repercussions and causes soil and land pollution. An innovative use of waste tires is shredding them into small pieces and using them as a replacement for coarse aggregate. Crumb rubber is obtained by chopping scrap tires, and in this study it was added in two different sets named SET 1 - Treated Crumb Rubber and concrete, and SET 2 - Treated Crumb rubber with Ultra Fine GGBS as admixture in concrete. Coarse aggregate replaces Rubber in each of the 2 SET’s in proportions of 5, 10, 15 and 20%. Properties like Compressive Strength, Young’s Modulus, Direct and Semi direct Ultrasonic Pulse Velocity, Sorptivity, Damping ratio and Frequency were found out. Deformation and mode shape were studied with modal analysis and static analysis by applying a uniform pressure corresponding to the highest compressive strength of the slab, using ANSYS.

Effect of Feedstock Size and its Distribution on the Properties of Detonation Sprayed Coatings

NASA Astrophysics Data System (ADS)

Suresh Babu, P.; Rao, D. S.; Rao, G. V. N.; Sundararajan, G.

2007-06-01

The detonation spraying is one of the most promising thermal spray variants for depositing wear and corrosion resistant coatings. The ceramic (Al2O3), metallic (Ni-20 wt%Cr) , and cermets (WC-12 wt%Co) powders that are commercially available were separated into coarser and finer size ranges with relatively narrow size distribution by employing centrifugal air classifier. The coatings were deposited using detonation spray technique. The effect of particle size and its distribution on the coating properties were examined. The surface roughness and porosity increased with increasing powder particle size for all the coatings consistently. The feedstock size was also found to influence the phase composition of Al2O3 and WC-Co coatings; however does not influence the phase composition of Ni-Cr coatings. The associated phase change and %porosity of the coatings imparted considerable variation in the coating hardness, fracture toughness, and wear properties. The fine and narrow size range WC-Co coating exhibited superior wear resistance. The coarse and narrow size distribution Al2O3 coating exhibited better performance under abrasion and sliding wear modes however under erosion wear mode the as-received Al2O3 coating exhibited better performance. In the case of metallic (Ni-Cr) coatings, the coatings deposited using coarser powder exhibited marginally lower-wear rate under abrasion and sliding wear modes. However, under erosion wear mode, the coating deposited using finer particle size exhibited considerably lower-wear rate.

Aerosol Number Size Distribution and Type Classification from 4-Year Polarization Optical Particle Counter (POPC) Measurements at Urban-Mountain Site in Seoul

NASA Astrophysics Data System (ADS)

Park, H. J.; Kim, S. W.; Kobayashi, H.; Nishizawa, T.

2017-12-01

The Polarization Optical Particle Counter (POPC), unlike general OPCs, has the advantage capable of classifying the aerosol types (e.g., dust, anthropogenic pollution), because it measures particle number, size and depolarization ratio (DPR; the sphericity information of single particle) for 4 size bins with diameter (0.5-1, 1-3, 3-5, 5-10 μm). In this study, we investigate the temporal variations of particle number and volume size distributions with DPR values and classify aerosol types such as dust, anthropogenic pollution, from 4-year (2013-2016) POPC data at Seoul National University campus in Seoul, Korea. Coarse mode particles from 5-10 μm with relatively high DPR values (0.25-0.3) were distinctly appeared in in both spring (March-May) and winter (December-February) due to frequent transport of Asian dust particles. In summer (June -August), however, both aerosol number concentration and DPR value were decreased in all size bins due to the influences of relatively clean maritime airmass and frequent precipitations. In autumn (September - November), the particle number concentration in all size bins was the lowest. To classify the aerosol types, we investigate particle number and volume size distributions and DPR value for clean, dust-dominant and anthropogenic pollution-dominant cases, which were selected by PM10, PM2.5 mass concentrations and its ratio, because those parameters are clearly different among aerosol types (Kobayashi et al., 2014, Pan et al., 2016). Non-spherical coarse mode particles (Dp > 2.5 μm, 0.1 < DPR < 0.6) were dominantly observed during the dust-dominant period, while both spherical fine mode and coarse mode particles (Dp < 1 μm and Dp = 2-4 μm, DPR < 0.1) were dominantly appeared during the pollution event. The aerosol type classifications with these criteria values were successfully applied to the extreme Asian dust event from February 22 to 24, 2015. The results showed that pollution-dominant airmass preceded by the appearance of a major mineral dust plume. Co-located aerosol lidar measurements also revealed that spherical pollution particles were observed near the surface prior to a major plume of non-spherical mineral dust.

STOCK: Structure mapper and online coarse-graining kit for molecular simulations

DOE PAGES

Bevc, Staš; Junghans, Christoph; Praprotnik, Matej

2015-03-15

We present a web toolkit STructure mapper and Online Coarse-graining Kit for setting up coarse-grained molecular simulations. The kit consists of two tools: structure mapping and Boltzmann inversion tools. The aim of the first tool is to define a molecular mapping from high, e.g. all-atom, to low, i.e. coarse-grained, resolution. Using a graphical user interface it generates input files, which are compatible with standard coarse-graining packages, e.g. VOTCA and DL_CGMAP. Our second tool generates effective potentials for coarse-grained simulations preserving the structural properties, e.g. radial distribution functions, of the underlying higher resolution model. The required distribution functions can be providedmore » by any simulation package. Simulations are performed on a local machine and only the distributions are uploaded to the server. The applicability of the toolkit is validated by mapping atomistic pentane and polyalanine molecules to a coarse-grained representation. Effective potentials are derived for systems of TIP3P (transferable intermolecular potential 3 point) water molecules and salt solution. The presented coarse-graining web toolkit is available at http://stock.cmm.ki.si.« less

THE BIMODAL DISTRIBUTION: DEVELOPMENT OF THE CONCEPT OF FINE AND COARSE PARTICLES AS SEPARATE AND DISTINCT COMPONENTS OF AIRBORNE PARTICULATE MATTER

EPA Science Inventory

In the early 1970s, it was understood that combustion particles were formed mostly in sizes below 1 um diameter, and windblown dust was suspended in sizes mostly above 1 um diameter. However, particle size distribution was thought of as a single mode. Particles were thought to f...

Surface plasmon resonances of arbitrarily shaped nanometallic structures in the small-screening-length limit

PubMed Central

Giannini, Vincenzo; Maier, Stefan A.; Craster, Richard V.

2016-01-01

According to the hydrodynamic Drude model, surface plasmon resonances of metallic nanostructures blueshift owing to the non-local response of the metal’s electron gas. The screening length characterizing the non-local effect is often small relative to the overall dimensions of the metallic structure, which enables us to derive a coarse-grained non-local description using matched asymptotic expansions; a perturbation theory for the blueshifts of arbitrary-shaped nanometallic structures is then developed. The effect of non-locality is not always a perturbation and we present a detailed analysis of the ‘bonding’ modes of a dimer of nearly touching nanowires where the leading-order eigenfrequencies and eigenmode distributions are shown to be a renormalization of those predicted assuming a local metal permittivity. PMID:27493575

A coarse-grained model of the effective interaction for charged amino acid residues and its application to formation of GCN4-pLI tetramer

NASA Astrophysics Data System (ADS)

Kawaguchi, Kazutomo; Nakagawa, Satoshi; Kurniawan, Isman; Kodama, Koichi; Arwansyah, Muhammad Saleh; Nagao, Hidemi

2018-03-01

We present a simple coarse-grained model of the effective interaction for charged amino acid residues, such as Glu and Lys, in a water solvent. The free-energy profile as a function of the distance between two charged amino acid side-chain analogues in an explicit water solvent is calculated with all-atom molecular dynamics simulation and thermodynamic integration method. The calculated free-energy profile is applied to the coarse-grained potential of the effective interaction between two amino acid residues. The Langevin dynamics simulations with our coarse-grained potential are performed for association of a small protein complex, GCN4-pLI tetramer. The tetramer conformation reproduced by our coarse-grained model is similar to the X-ray crystallographic structure. We show that the effective interaction between charged amino acid residues stabilises association and orientation of protein complex. We also investigate the association pathways of GCN4-pLI tetramer.

Seasonal variation of columnar aerosol optical properties and radiative forcing over Beijing, China

NASA Astrophysics Data System (ADS)

Yu, Xingna; Lü, Rui; Liu, Chao; Yuan, Liang; Shao, Yixing; Zhu, Bin; Lei, Lu

2017-10-01

Long-term seasonal characteristics of aerosol optical properties and radiative forcing at Beijing (during March 2001-March 2015) were investigated using a combination of ground-based Sun/sky radiometer retrievals from the AERONET and a radiative transfer model. Aerosol optical depth (AOD) showed a distinct seasonal variation with higher values in spring and summer, and relatively lower values in fall and winter. Average Angstrom exponent (AE) in spring was lower than other seasons, implying the significant impact of dust episodes on aerosol size distribution. AE mainly distributed between 1.0 and 1.4 with an obvious uni-peak pattern in each season. The observation data showed that high AODs (>1.0) were clustered in the fine mode growth wing and the coarse mode. Compared to AOD, seasonal variation in single scattering albedo (SSA) showed an opposite pattern with larger values in summer and spring, and smaller ones in winter and fall. The highest volume size distribution and median radius of fine mode particles occurred in summer, while those of coarse mode particles in spring. The averaged aerosol radiative forcing (ARF) at the top of the atmosphere (TOA) in spring, summer, fall and winter were -33 ± 22 W m-2, -35 ± 22 W m-2, -28 ± 20 W m-2, and -24 ± 23 W m-2 respectively, and these differences were mainly due to the SSA seasonal variation. The largest positive ARF within atmosphere occurred in spring, implying strong warming in the atmosphere. The low heating ratio in summer was caused by the increase in water vapor content, which enhanced light scattering capacity (i.e., increased SSA).

Simplified aerosol modeling for variational data assimilation

NASA Astrophysics Data System (ADS)

Huneeus, N.; Boucher, O.; Chevallier, F.

2009-11-01

We have developed a simplified aerosol model together with its tangent linear and adjoint versions for the ultimate aim of optimizing global aerosol and aerosol precursor emission using variational data assimilation. The model was derived from the general circulation model LMDz; it groups together the 24 aerosol species simulated in LMDz into 4 species, namely gaseous precursors, fine mode aerosols, coarse mode desert dust and coarse mode sea salt. The emissions have been kept as in the original model. Modifications, however, were introduced in the computation of aerosol optical depth and in the processes of sedimentation, dry and wet deposition and sulphur chemistry to ensure consistency with the new set of species and their composition. The simplified model successfully manages to reproduce the main features of the aerosol distribution in LMDz. The largest differences in aerosol load are observed for fine mode aerosols and gaseous precursors. Differences between the original and simplified models are mainly associated to the new deposition and sedimentation velocities consistent with the definition of species in the simplified model and the simplification of the sulphur chemistry. Furthermore, simulated aerosol optical depth remains within the variability of monthly AERONET observations for all aerosol types and all sites throughout most of the year. Largest differences are observed over sites with strong desert dust influence. In terms of the daily aerosol variability, the model is less able to reproduce the observed variability from the AERONET data with larger discrepancies in stations affected by industrial aerosols. The simplified model however, closely follows the daily simulation from LMDz. Sensitivity analyses with the tangent linear version show that the simplified sulphur chemistry is the dominant process responsible for the strong non-linearity of the model.

Analysis of Fine and Coarse mode Aerosol Distributions from AERONET's mini-DRAGON Set-up at Singapore 2012

NASA Astrophysics Data System (ADS)

Salinas Cortijo, S. V.; Chew, B. N.; Muller, A.; Liew, S.

2013-12-01

Aerosol optical depth combined with the Angstrom exponent and its derivative, are often used as a qualitative indicator of aerosol type and particle size regime. In Singapore, the sources of aerosols are mostly from fossil fuel burning (energy stations, incinerators, urban transport etc.) and from industrial and urban areas. However, depending on the time of the year (July-October), there can be a strong bio-mass component originated from uncontrolled forest/plantation fires from the neighboring land masses of Sumatra and Borneo. Unlike urban/fossil fuel aerosols, smoke or bio-mass related aerosol particles are typically characterized by showing a large optical depth and small, sub-micron particle size distributions. Trans-boundary smoke episodes has become an annual phenomenon in this region. Severe episodes were recorded in 1997 and 2006 and other minor episodes happened during 2002, 2004, 2010 and more recently on 2013. On August-September 2012, as part of CRISP participation on the August-September ground campaign of the Southeast Asia Composition, Cloud Climate Coupling Regional Study (SEAC4RS), a Distributed Regional Aerosol Gridded Observation Networks (DRAGON) set of six CIMEL CE-318A automatic Sun-tracking photometers have been deployed at sites located at North (Yishun ITE), East (Temasek Poly), West (NUS and Pandan Reservoir), Central (NEA) and South (St. John's island) of Singapore. In order to fully discriminate bio-mass burning events over other local sources, we perform a spectral discrimination of fine/coarse mode particle regime to all DRAGON sites; subsequently, the fine mode parameters such as optical depth, optical ratio and fine mode Angstrom exponent are used to identify possible bio-mass related events within the data set. Spatio-temporal relationship between sites are also investigated.

Picosecond ultrasonic study of surface acoustic waves on periodically patterned layered nanostructures.

PubMed

Colletta, Michael; Gachuhi, Wanjiru; Gartenstein, Samuel A; James, Molly M; Szwed, Erik A; Daly, Brian C; Cui, Weili; Antonelli, George A

2018-07-01

We have used the ultrafast pump-probe technique known as picosecond ultrasonics to generate and detect surface acoustic waves on a structure consisting of nanoscale Al lines on SiO 2 on Si. We report results from ten samples with varying pitch (1000-140 nm) and SiO 2 film thickness (112 nm or 60 nm), and compare our results to an isotropic elastic calculation and a coarse-grained molecular dynamics simulation. In all cases we are able to detect and identify a Rayleigh-like surface acoustic wave with wavelength equal to the pitch of the lines and frequency in the range of 5-24 GHz. In some samples, we are able to detect additional, higher frequency surface acoustic waves or independent modes of the Al lines with frequencies close to 50 GHz. We also describe the effects of probe beam polarization on the measurement's sensitivity to the different surface modes. Copyright © 2018 Elsevier B.V. All rights reserved.

Improving Calculation Accuracies of Accumulation-Mode Fractions Based on Spectral of Aerosol Optical Depths

NASA Astrophysics Data System (ADS)

Ying, Zhang; Zhengqiang, Li; Yan, Wang

2014-03-01

Anthropogenic aerosols are released into the atmosphere, which cause scattering and absorption of incoming solar radiation, thus exerting a direct radiative forcing on the climate system. Anthropogenic Aerosol Optical Depth (AOD) calculations are important in the research of climate changes. Accumulation-Mode Fractions (AMFs) as an anthropogenic aerosol parameter, which are the fractions of AODs between the particulates with diameters smaller than 1μm and total particulates, could be calculated by AOD spectral deconvolution algorithm, and then the anthropogenic AODs are obtained using AMFs. In this study, we present a parameterization method coupled with an AOD spectral deconvolution algorithm to calculate AMFs in Beijing over 2011. All of data are derived from AErosol RObotic NETwork (AERONET) website. The parameterization method is used to improve the accuracies of AMFs compared with constant truncation radius method. We find a good correlation using parameterization method with the square relation coefficient of 0.96, and mean deviation of AMFs is 0.028. The parameterization method could also effectively solve AMF underestimate in winter. It is suggested that the variations of Angstrom indexes in coarse mode have significant impacts on AMF inversions.

Effects of coarse aggregate on the physical properties of Florida concrete mixes.

DOT National Transportation Integrated Search

2015-10-01

Portland cement concrete is a heterogeneous, composite material composed of coarse and fine granular material : embedded in a matrix of hardened paste. The coarse material is aggregate, which is primarily used as inexpensive filler : and comprises th...

Non-Markovian closure models for large eddy simulations using the Mori-Zwanzig formalism

NASA Astrophysics Data System (ADS)

Parish, Eric J.; Duraisamy, Karthik

2017-01-01

This work uses the Mori-Zwanzig (M-Z) formalism, a concept originating from nonequilibrium statistical mechanics, as a basis for the development of coarse-grained models of turbulence. The mechanics of the generalized Langevin equation (GLE) are considered, and insight gained from the orthogonal dynamics equation is used as a starting point for model development. A class of subgrid models is considered which represent nonlocal behavior via a finite memory approximation [Stinis, arXiv:1211.4285 (2012)], the length of which is determined using a heuristic that is related to the spectral radius of the Jacobian of the resolved variables. The resulting models are intimately tied to the underlying numerical resolution and are capable of approximating non-Markovian effects. Numerical experiments on the Burgers equation demonstrate that the M-Z-based models can accurately predict the temporal evolution of the total kinetic energy and the total dissipation rate at varying mesh resolutions. The trajectory of each resolved mode in phase space is accurately predicted for cases where the coarse graining is moderate. Large eddy simulations (LESs) of homogeneous isotropic turbulence and the Taylor-Green Vortex show that the M-Z-based models are able to provide excellent predictions, accurately capturing the subgrid contribution to energy transfer. Last, LESs of fully developed channel flow demonstrate the applicability of M-Z-based models to nondecaying problems. It is notable that the form of the closure is not imposed by the modeler, but is rather derived from the mathematics of the coarse graining, highlighting the potential of M-Z-based techniques to define LES closures.

Mode localization in the cooperative dynamics of protein recognition

NASA Astrophysics Data System (ADS)

Copperman, J.; Guenza, M. G.

2016-07-01

The biological function of proteins is encoded in their structure and expressed through the mediation of their dynamics. This paper presents a study on the correlation between local fluctuations, binding, and biological function for two sample proteins, starting from the Langevin Equation for Protein Dynamics (LE4PD). The LE4PD is a microscopic and residue-specific coarse-grained approach to protein dynamics, which starts from the static structural ensemble of a protein and predicts the dynamics analytically. It has been shown to be accurate in its prediction of NMR relaxation experiments and Debye-Waller factors. The LE4PD is solved in a set of diffusive modes which span a vast range of time scales of the protein dynamics, and provides a detailed picture of the mode-dependent localization of the fluctuation as a function of the primary structure of the protein. To investigate the dynamics of protein complexes, the theory is implemented here to treat the coarse-grained dynamics of interacting macromolecules. As an example, calculations of the dynamics of monomeric and dimerized HIV protease and the free Insulin Growth Factor II Receptor (IGF2R) domain 11 and its IGF2R:IGF2 complex are presented. Either simulation-derived or experimentally measured NMR conformers are used as input structural ensembles to the theory. The picture that emerges suggests a dynamical heterogeneous protein where biologically active regions provide energetically comparable conformational states that are trapped by a reacting partner in agreement with the conformation-selection mechanism of binding.

Remote sensing of soot carbon - Part 2: Understanding the absorption Ångström exponent

NASA Astrophysics Data System (ADS)

Schuster, G. L.; Dubovik, O.; Arola, A.; Eck, T. F.; Holben, B. N.

2016-02-01

Recently, some authors have suggested that the absorption Ångström exponent (AAE) can be used to deduce the component aerosol absorption optical depths (AAODs) of carbonaceous aerosols in the AERONET database. This AAE approach presumes that AAE ≪ 1 for soot carbon, which contrasts the traditional small particle limit of AAE = 1 for soot carbon. Thus, we provide an overview of the AERONET retrieval, and we investigate how the microphysics of carbonaceous aerosols can be interpreted in the AERONET AAE product. We find that AAE ≪ 1 in the AERONET database requires large coarse mode fractions and/or imaginary refractive indices that increase with wavelength. Neither of these characteristics are consistent with the current definition of soot carbon, so we explore other possibilities for the cause of AAE ≪ 1. AAE is related to particle size, and coarse mode particles have a smaller AAE than fine mode particles for a given aerosol mixture of species. We also note that the mineral goethite has an imaginary refractive index that increases with wavelength, is very common in dust regions, and can easily contribute to AAE ≪ 1. We find that AAE ≪ 1 can not be caused by soot carbon, unless soot carbon has an imaginary refractive index that increases with wavelength throughout the visible and near-infrared spectrums. Finally, AAE is not a robust parameter for separating carbonaceous absorption from dust aerosol absorption in the AERONET database.

Quantifying the contribution of long-range transport to particulate matter (PM) mass loadings at a suburban site in the north-western Indo-Gangetic Plain (NW-IGP)

NASA Astrophysics Data System (ADS)

Pawar, H.; Garg, S.; Kumar, V.; Sachan, H.; Arya, R.; Sarkar, C.; Chandra, B. P.; Sinha, B.

2015-08-01

Many sites in the densely populated Indo-Gangetic Plain (IGP) frequently exceed the national ambient air quality standard (NAAQS) of 100 μg m-3 for 24 h average PM10 and 60 μg m-3 for 24 h average PM2.5 mass loadings, exposing residents to hazardous levels of particulate matter (PM) throughout the year. We quantify the contribution of long-range transport to elevated PM levels and the number of exceedance events through a back-trajectory climatology analysis of air masses arriving at the IISER Mohali Atmospheric Chemistry facility (30.667° N, 76.729° E; 310 m a.m.s.l.) for the period August 2011-June 2013. Air masses arriving at the receptor site were classified into six clusters, which represent synoptic-scale air-mass transport patterns. Long-range transport from the west leads to significant enhancements in the average fine- and coarse-mode PM mass loadings during all seasons. The contribution of long-range transport from the west and south-west (source regions: Arabia, Thar Desert, Middle East and Afghanistan) to coarse-mode PM varied between 9 and 57 % of the total PM10-2.5 mass. Local pollution episodes (wind speed < 1 m s-1) contributed to enhanced PM2.5 mass loadings during both the winter and summer seasons and to enhanced coarse-mode PM only during the winter season. South-easterly air masses (source region: eastern IGP) were associated with significantly lower fine- and coarse-mode PM mass loadings during all seasons. The fraction of days in each season during which the PM mass loadings exceeded the national ambient air quality standard was controlled by long-range transport to a much lesser degree. For the local cluster, which represents regional air masses (source region: NW-IGP), the fraction of days during which the national ambient air quality standard (NAAQS) of 60 μg m-3 for 24 h average PM2.5 was exceeded varied between 36 % of the days associated with this synoptic-scale transport during the monsoon, and 95 % during post-monsoon and winter seasons; the fraction of days during which the NAAQS of 100 μg m-3 for the 24 h average PM10 was exceeded, varied between 48 % during the monsoon and 98 % during the post-monsoon season. Long-range transport was responsible for both, bringing air masses with a significantly lower fraction of exceedance days from the eastern IGP and air masses with a moderate increase in the fraction of exceedance days from the west (source regions: Arabia, Thar Desert, Middle East and Afghanistan). In order to bring PM mass loadings into compliance with the NAAQS and to reduce the number of exceedance days, mitigation of regional combustion sources in the NW-IGP needs to be given highest priority.

On the origin and variability of suspended particulate matter (PM1, PM2.5 and PM10) concentrations in Cyprus.

NASA Astrophysics Data System (ADS)

Pikridas, Michael; Vrekoussis, Mihalis; Mihalopoulos, Nikolaos; Kizas, Christos; Savvides, Chrysanthos; Sciare, Jean

2017-04-01

The Eastern Mediterranean (EM) lies at the crossroad of three different continents (Europe, Asia, and Africa). EM is a densely populated region including several cities with 3M inhabitants or more (e.g. Athens, Istanbul, Izmir, and Cairo). It has been identified as the most polluted area in Europe with respect to particulate matter (PM) mainly due to the combination of high photochemical activity, which causes pollutants to oxidize and partitioning in the particle phase, with the elevated pollutants emissions from neighboring regions. In addition, the proximity to Africa and the Middle East allows frequent transport of dust particles. At the center of the Eastern Mediterranean lies the island of Cyprus, which has received very little attention regarding its PM levels despite being the location in Europe most frequently impacted by air masses from the Middle East. Herewith, we present a historical PM archive that spans 2 decades. It involves ongoing monitoring on a daily basis of particulate matter with diameters smaller than 10 μm (PM10), 2.5 μm (PM2.5), and 1 μm (PM1) conducted in at least one, of the 12 currently existing air quality stations in Cyprus since 1997, 2005, and 2009, respectively. The most extended PM datasets correspond a) to the Agia Marina Xyliatou (AMX) monitoring station established at a remote area at the foothills of mount Troodos and b) that of the inland capital, Nicosia. Based on this long-term dataset, the diurnal, temporal and annual variability is assessed. Prior to 2010, PM10 concentration at all sites remained relatively constant, but at different levels, violating the annual EU legislated PM10 limit of 40 μg m-3. Since 2010, coarse mode levels have decreased at all sites. The reported decrease was equal to 30% at AMX. As a result, since 2010 the observed levels comply with the EU legislation threshold. Satellite observations of Aerosol Optical Thickness (AOT) Moderate Resolution Imaging Spectroradiometer (MODIS) onboard NASA's Terra satellite support this result, suggesting that it is not due to a systematic bias in the sampling procedure. The amount of dust regionally transported from both Sahara and Middle-East deserts exhibited an increasing trend from 1998 till 2010, resulting in an elevation of the coarse mode by 0.5 μg m-3 annually. However, during 2010 the contribution of regional dust to PM10 declined sharply (by 6.8 μg m-3), similar to the observed coarse mode trend and has remained at this reduced level since. However, PM1, mostly driven by anthropogenic emissions, remained constant at the regional background site of AMX. Our results suggest a sharp decline in the coarse mode concentration since 2010 that cannot be attributed to local, anthropogenic, influence but rather to the unexpected decline in regional dust transport.

The size distribution of chemical elements of atmospheric aerosol at a semi-rural coastal site in Venice (Italy). The role of atmospheric circulation.

PubMed

Masiol, Mauro; Squizzato, Stefania; Ceccato, Daniele; Pavoni, Bruno

2015-01-01

The concentrations of selected elemental tracers were determined in the aerosol of a semi-rural coastal site near Venice (Italy). Size-segregated aerosol samples were collected using an 8-stage cascade impactor set at 15m above ground, during the cold season (late autumn and winter), when high levels of many pollutants are known to cause risks for human health. From the experimental data, information was extracted on potential pollutant sources by investigating the relationships between elements in the different size fractions. Moreover, an approach to highlight the importance of local atmospheric circulation and air mass origin in influencing the PM composition and fractional distribution is proposed. Anthropogenic elements are strongly inter-correlated in the submicrometric (<1 μm) (S, K, Mn, Cu, Fe and Zn) and intermediate mode (1-4 μm) (Mn, Cu, Zn, Ni) and their relationships highlight the presence of several sources (combustions, secondary aerosol, road traffic). In the intermediate mode, associations having geochemical significance exist between marine (Na, Cl and Mg) and crustal (Si, Mg, Ca, Al, Ti and K) elements. In the coarse mode (>4 μm) Fe and Zn are well correlated and are probably linked to tire and brake wear emissions. Regarding atmospheric circulation, results show increasing levels of elements related to pollution sources (S, K, Mn, Ni, Cu, Zn) when air masses come from Central and Eastern Europe direction and on the ground wind blows from NWN-N-NE (from mainland Venice). Low wind speed and high percentage of wind calm hours favor element accumulation in the submicrometric and intermediate modes. Furthermore, strong winds favor the formation of sea-spray and the increase of Si in the coarse mode due to the resuspension of sand fine particles. Copyright © 2014 Elsevier Ltd. All rights reserved.

Frost flowers and sea-salt aerosols over seasonal sea-ice areas in northwestern Greenland during winter-spring

NASA Astrophysics Data System (ADS)

Hara, Keiichiro; Matoba, Sumito; Hirabayashi, Motohiro; Yamasaki, Tetsuhide

2017-07-01

Sea salts and halogens in aerosols, frost flowers, and brine play an important role in atmospheric chemistry in polar regions. Simultaneous sampling and observations of frost flowers, brine, and aerosol particles were conducted around Siorapaluk in northwestern Greenland during December 2013 to March 2014. Results show that water-soluble frost flower and brine components are sea-salt components (e.g., Na+, Cl-, Mg2+, K+, Ca2+, Br-, and iodine). Concentration factors of sea-salt components of frost flowers and brine relative to seawater were 1.14-3.67. Sea-salt enrichment of Mg2+, K+, Ca2+, and halogens (Cl-, Br-, and iodine) in frost flowers is associated with sea-salt fractionation by precipitation of mirabilite and hydrohalite. High aerosol number concentrations correspond to the occurrence of higher abundance of sea-salt particles in both coarse and fine modes, and blowing snow and strong winds. Aerosol number concentrations, particularly in coarse mode, are increased considerably by release from the sea-ice surface under strong wind conditions. Sulfate depletion by sea-salt fractionation was found to be limited in sea-salt aerosols because of the presence of non-sea-salt (NSS) SO42-. However, coarse and fine sea-salt particles were found to be rich in Mg. Strong Mg enrichment might be more likely to proceed in fine sea-salt particles. Magnesium-rich sea-salt particles might be released from the surface of snow and slush layer (brine) on sea ice and frost flowers. Mirabilite-like and ikaite-like particles were identified only in aerosol samples collected near new sea-ice areas. From the field evidence and results from earlier studies, we propose and describe sea-salt cycles in seasonal sea-ice areas.

Influence of rain on the abundance of bioaerosols in fine and coarse particles

NASA Astrophysics Data System (ADS)

Rathnayake, Chathurika M.; Metwali, Nervana; Jayarathne, Thilina; Kettler, Josh; Huang, Yuefan; Thorne, Peter S.; O'Shaughnessy, Patrick T.; Stone, Elizabeth A.

2017-02-01

Assessing the environmental, health, and climate impacts of bioaerosols requires knowledge of their size and abundance. These two properties were assessed through daily measurements of chemical tracers for pollens (sucrose, fructose, and glucose), fungal spores (mannitol and glucans), and Gram-negative bacterial endotoxins in two particulate matter (PM) size modes: fine particles (< 2.5 µm) and coarse particles (2.5-10 µm) as determined by their aerodynamic diameter. Measurements were made during the spring tree pollen season (mid-April to early May) and late summer ragweed season (late August to early September) in the Midwestern US in 2013. Under dry conditions, pollen, and fungal spore tracers were primarily in coarse PM (> 75 %), as expected for particles greater than 2.5 µm. Rainfall on 2 May corresponded to maximum atmospheric pollen tracer levels and a redistribution of pollen tracers to the fine PM fraction (> 80 %). Both changes were attributed to the osmotic rupture of pollen grains that led to the suspension of fine-sized pollen fragments. Fungal spore tracers peaked in concentration following spring rain events and decreased in particle size, but to a lesser extent than pollens. A short, heavy thunderstorm in late summer corresponded to an increase in endotoxin and glucose levels, with a simultaneous shift to smaller particle sizes. Simultaneous increase in bioaerosol levels and decrease in their size have significant implications for population exposures to bioaerosols, particularly during rain events. Chemical mass balance (CMB) source apportionment modeling and regionally specific pollen profiles were used to apportion PM mass to pollens and fungal spores. Springtime pollen contributions to the mass of particles < 10 µm (PM10) ranged from 0.04 to 0.8 µg m-3 (0.2-38 %, averaging 4 %), with maxima occurring on rainy days. Fungal spore contributions to PM10 mass ranged from 0.1 to 1.5 µg m-3 (0.8-17 %, averaging 5 %), with maxima occurring after rain. Overall, this study defines changes to the fine- and coarse-mode distribution of PM, pollens, fungal spores, and endotoxins in response to rain in the Midwestern United States and advances the ability to apportion PM mass to pollens.

Sentiment Diffusion of Public Opinions about Hot Events: Based on Complex Network

PubMed Central

Hao, Xiaoqing; An, Haizhong; Zhang, Lijia; Li, Huajiao; Wei, Guannan

2015-01-01

To study the sentiment diffusion of online public opinions about hot events, we collected people’s posts through web data mining techniques. We calculated the sentiment value of each post based on a sentiment dictionary. Next, we divided those posts into five different orientations of sentiments: strongly positive (P), weakly positive (p), neutral (o), weakly negative (n), and strongly negative (N). These sentiments are combined into modes through coarse graining. We constructed sentiment mode complex network of online public opinions (SMCOP) with modes as nodes and the conversion relation in chronological order between different types of modes as edges. We calculated the strength, k-plex clique, clustering coefficient and betweenness centrality of the SMCOP. The results show that the strength distribution obeys power law. Most posts’ sentiments are weakly positive and neutral, whereas few are strongly negative. There are weakly positive subgroups and neutral subgroups with ppppp and ooooo as the core mode, respectively. Few modes have larger betweenness centrality values and most modes convert to each other with these higher betweenness centrality modes as mediums. Therefore, the relevant person or institutes can take measures to lead people’s sentiments regarding online hot events according to the sentiment diffusion mechanism. PMID:26462230

Effects of coarse chalk dust particles (2.5-10 μm) on respiratory burst and oxidative stress in alveolar macrophages.

PubMed

Zhang, Yuexia; Yang, Zhenhua; Feng, Yan; Li, Ruijin; Zhang, Quanxi; Geng, Hong; Dong, Chuan

2015-08-01

The main aim of the present study was to examine in vitro responses of rat alveolar macrophages (AMs) exposed to coarse chalk dust particles (particulate matter in the size range 2.5-10 μm, PM(coarse)) by respiratory burst and oxidative stress. Chalk PM(coarse)-induced respiratory burst in AMs was measured by using a luminol-dependent chemiluminescence (CL) method. Also, the cell viability; lactate dehydrogenase (LDH) release; levels of cellular superoxide dismutase (SOD), catalase (CAT), glutathione (GSH), malondialdehyde (MDA), and acid phosphatase (ACP); plasma membrane ATPase; and extracellular nitric oxide (NO) level were determined 4 h following the treatment with the different dosages of chalk PM(coarse). The results showed that chalk PM(coarse) initiated the respiratory burst of AMs as indicated by strong CL, which was inhibited by diphenyleneiodonium chloride and L-N-nitro-L-arginine methyl ester hydrochloride. It suggested that chalk PM(coarse) induced the production of reactive oxygen species (ROS) and reactive nitrogen species (RNS) in AMs. This hypothesis was confirmed by the fact that chalk PM(coarse) resulted in a significant decrease of intracellular SOD, GSH, ACP, and ATPase levels and a notable increase of intracellular CAT, MDA content, and extracellular NO level, consequently leading to a decrease of the cell viability and a increase of LDH release. It was concluded that AMs exposed to chalk PM(coarse) can suffer from cytotoxicity which may be mediated by generation of excessive ROS/RNS. Graphical Abstract The possible mechanism of coarse chalk particles-induced adverse effects in AMs.

Using Dispersed Modes During Model Correlation

NASA Technical Reports Server (NTRS)

Stewart, Eric; Hathcock, Megan

2017-01-01

Using model dispersions as a starting point allows us to quickly adjust a model to reflect new test data: a) The analyst does a lot of work before the test to save time post-test. b) Creating 1000s of model dispersions to provide "coarse tuning," then use Attune to provide the "fine tuning." ?Successful model tuning on three structures: a) TAURUS. b) Ares I-X C) Cart (in backup charts). ?Mode weighting factors, matrix norm method, and XOR vs. MAC all play key roles in determining the BME. The BME process will be used on future tests: a) ISPE modal test (ongoing work). b) SLS modal test (mid 2018).

Importance of mineral dust and anthropogenic pollutants mixing during a long-lasting high PM event over East Asia.

PubMed

Wang, Zhe; Pan, Xiaole; Uno, Itsushi; Chen, Xueshun; Yamamoto, Shigekazu; Zheng, Haitao; Li, Jie; Wang, Zifa

2018-03-01

A long-lasting high particulate matter (PM) concentration episode persisted over East Asia from May 24 to June 3, 2014. The Nested Air Quality Prediction Model System (NAQPMS) was used to investigate the mixing of dust and anthropogenic pollutants during this episode. Comparison of observations revealed that the NAQPMS successfully reproduced the time series PM 2.5 and PM 10 concentrations, as well as the nitrate and sulfate concentrations in fine (aerodynamic diameter ≤ 2.5 μm) and coarse mode (2.5 μm < aerodynamic diameter ≤ 10 μm). This episode originated from two dust events that occurred in the inland desert areas of Mongolia and China, and then the long-range transported dust and anthropogenic pollutants were trapped over the downwind region of East Asia for more than one week due to the blocked north Pacific subtropical high-pressure system over the east of Japan. The model results showed that mineral dust accounted for 53-83% of PM 10 , and 39-67% of PM 2.5 over five cities in East Asia during this episode. Sensitivity analysis indicated that the Qingdao and Seoul regions experienced dust and pollution twice, by direct transport from the dust source region and from dust detoured over the Shanghai area. The results of the NAQPMS model confirmed the importance of dust heterogeneous reactions (HRs) over East Asia. Simulated dust NO 3 - concentrations accounted for 75% and 84% of total NO 3 - in fine and coarse mode, respectively, in Fukuoka, Japan. The horizontal distribution of model results revealed that the ratio of dust NO 3 - /dust concentration increased from about 1% over the Chinese land mass to a maximum of 8% and 6% respectively in fine and coarse mode over the ocean to the southeast of Japan, indicating that dust NO 3 - was mainly formed over the Yellow Sea and the East China Sea before reaching Japan. Copyright © 2017 Elsevier Ltd. All rights reserved.

From individual spiking neurons to population behavior: Systematic elimination of short-wavelength spatial modes

NASA Astrophysics Data System (ADS)

Steyn-Ross, Moira L.; Steyn-Ross, D. A.

2016-02-01

Mean-field models of the brain approximate spiking dynamics by assuming that each neuron responds to its neighbors via a naive spatial average that neglects local fluctuations and correlations in firing activity. In this paper we address this issue by introducing a rigorous formalism to enable spatial coarse-graining of spiking dynamics, scaling from the microscopic level of a single type 1 (integrator) neuron to a macroscopic assembly of spiking neurons that are interconnected by chemical synapses and nearest-neighbor gap junctions. Spiking behavior at the single-neuron scale ℓ ≈10 μ m is described by Wilson's two-variable conductance-based equations [H. R. Wilson, J. Theor. Biol. 200, 375 (1999), 10.1006/jtbi.1999.1002], driven by fields of incoming neural activity from neighboring neurons. We map these equations to a coarser spatial resolution of grid length B ℓ , with B ≫1 being the blocking ratio linking micro and macro scales. Our method systematically eliminates high-frequency (short-wavelength) spatial modes q ⃗ in favor of low-frequency spatial modes Q ⃗ using an adiabatic elimination procedure that has been shown to be equivalent to the path-integral coarse graining applied to renormalization group theory of critical phenomena. This bottom-up neural regridding allows us to track the percolation of synaptic and ion-channel noise from the single neuron up to the scale of macroscopic population-average variables. Anticipated applications of neural regridding include extraction of the current-to-firing-rate transfer function, investigation of fluctuation criticality near phase-transition tipping points, determination of spatial scaling laws for avalanche events, and prediction of the spatial extent of self-organized macrocolumnar structures. As a first-order exemplar of the method, we recover nonlinear corrections for a coarse-grained Wilson spiking neuron embedded in a network of identical diffusively coupled neurons whose chemical synapses have been disabled. Intriguingly, we find that reblocking transforms the original type 1 Wilson integrator into a type 2 resonator whose spike-rate transfer function exhibits abrupt spiking onset with near-vertical takeoff and chaotic dynamics just above threshold.

An 11-year global gridded aerosol optical thickness reanalysis (v1.0) for atmospheric and climate sciences

NASA Astrophysics Data System (ADS)

Lynch, Peng; Reid, Jeffrey S.; Westphal, Douglas L.; Zhang, Jianglong; Hogan, Timothy F.; Hyer, Edward J.; Curtis, Cynthia A.; Hegg, Dean A.; Shi, Yingxi; Campbell, James R.; Rubin, Juli I.; Sessions, Walter R.; Turk, F. Joseph; Walker, Annette L.

2016-04-01

While stand alone satellite and model aerosol products see wide utilization, there is a significant need in numerous atmospheric and climate applications for a fused product on a regular grid. Aerosol data assimilation is an operational reality at numerous centers, and like meteorological reanalyses, aerosol reanalyses will see significant use in the near future. Here we present a standardized 2003-2013 global 1 × 1° and 6-hourly modal aerosol optical thickness (AOT) reanalysis product. This data set can be applied to basic and applied Earth system science studies of significant aerosol events, aerosol impacts on numerical weather prediction, and electro-optical propagation and sensor performance, among other uses. This paper describes the science of how to develop and score an aerosol reanalysis product. This reanalysis utilizes a modified Navy Aerosol Analysis and Prediction System (NAAPS) at its core and assimilates quality controlled retrievals of AOT from the Moderate Resolution Imaging Spectroradiometer (MODIS) on Terra and Aqua and the Multi-angle Imaging SpectroRadiometer (MISR) on Terra. The aerosol source functions, including dust and smoke, were regionally tuned to obtain the best match between the model fine- and coarse-mode AOTs and the Aerosol Robotic Network (AERONET) AOTs. Other model processes, including deposition, were tuned to minimize the AOT difference between the model and satellite AOT. Aerosol wet deposition in the tropics is driven with satellite-retrieved precipitation, rather than the model field. The final reanalyzed fine- and coarse-mode AOT at 550 nm is shown to have good agreement with AERONET observations, with global mean root mean square error around 0.1 for both fine- and coarse-mode AOTs. This paper includes a discussion of issues particular to aerosol reanalyses that make them distinct from standard meteorological reanalyses, considerations for extending such a reanalysis outside of the NASA A-Train era, and examples of how the aerosol reanalysis can be applied or fused with other model or remote sensing products. Finally, the reanalysis is evaluated in comparison with other available studies of aerosol trends, and the implications of this comparison are discussed.

Development studies towards an 11-year global gridded aerosol optical thickness reanalysis for climate and applied applications

NASA Astrophysics Data System (ADS)

Lynch, P.; Reid, J. S.; Westphal, D. L.; Zhang, J.; Hogan, T. F.; Hyer, E. J.; Curtis, C. A.; Hegg, D. A.; Shi, Y.; Campbell, J. R.; Rubin, J. I.; Sessions, W. R.; Turk, F. J.; Walker, A. L.

2015-12-01

While standalone satellite and model aerosol products see wide utilization, there is a significant need in numerous climate and applied applications for a fused product on a regular grid. Aerosol data assimilation is an operational reality at numerous centers, and like meteorological reanalyses, aerosol reanalyses will see significant use in the near future. Here we present a standardized 2003-2013 global 1° × 1° and 6 hourly modal aerosol optical thickness (AOT) reanalysis product. This dataset can be applied to basic and applied earth system science studies of significant aerosol events, aerosol impacts on numerical weather prediction, and electro-optical propagation and sensor performance, among other uses. This paper describes the science of how to develop and score an aerosol reanalysis product. This reanalysis utilizes a modified Navy Aerosol Analysis and Prediction System (NAAPS) at its core and assimilates quality controlled retrievals of AOT from the Moderate Resolution Imaging Spectroradiometer (MODIS) on Terra and Aqua and the Multi-angle Imaging SpectroRadiometer (MISR) on Terra. The aerosol source functions, including dust and smoke, were regionally tuned to obtain the best match between the model fine and coarse mode AOTs and the Aerosol Robotic Network (AERONET) AOTs. Other model processes, including deposition, were tuned to minimize the AOT difference between the model and satellite AOT. Aerosol wet deposition in the tropics is driven with satellite retrieved precipitation, rather than the model field. The final reanalyzed fine and coarse mode AOT at 550 nm is shown to have good agreement with AERONET observations, with global mean root mean square error around 0.1 for both fine and coarse mode AOTs. This paper includes a discussion of issues particular to aerosol reanalyses that make them distinct from standard meteorological reanalyses, considerations for extending such a reanalysis outside of the NASA A-Train era, and examples of how the aerosol reanalysis can be applied or fused with other model or remote sensing products. Finally, the reanalysis is evaluated in comparison with other available studies of aerosol trends, and the implications of this comparison are discussed.

Sediment transport processes in the Pearl River Estuary as revealed by grain-size end-member modeling and sediment trend analysis

NASA Astrophysics Data System (ADS)

Li, Tao; Li, Tuan-Jie

2018-04-01

The analysis of grain-size distribution enables us to decipher sediment transport processes and understand the causal relations between dynamic processes and grain-size distributions. In the present study, grain sizes were measured from surface sediments collected in the Pearl River Estuary and its adjacent coastal areas. End-member modeling analysis attempts to unmix the grain sizes into geologically meaningful populations. Six grain-size end-members were identified. Their dominant modes are 0 Φ, 1.5 Φ, 2.75 Φ, 4.5 Φ, 7 Φ, and 8 Φ, corresponding to coarse sand, medium sand, fine sand, very coarse silt, silt, and clay, respectively. The spatial distributions of the six end-members are influenced by sediment transport and depositional processes. The two coarsest end-members (coarse sand and medium sand) may reflect relict sediments deposited during the last glacial period. The fine sand end-member would be difficult to transport under fair weather conditions, and likely indicates storm deposits. The three remaining fine-grained end-members (very coarse silt, silt, and clay) are recognized as suspended particles transported by saltwater intrusion via the flood tidal current, the Guangdong Coastal Current, and riverine outflow. The grain-size trend analysis shows distinct transport patterns for the three fine-grained end-members. The landward transport of the very coarse silt end-member occurs in the eastern part of the estuary, the seaward transport of the silt end-member occurs in the western part, and the east-west transport of the clay end-member occurs in the coastal areas. The results show that grain-size end-member modeling analysis in combination with sediment trend analysis help to better understand sediment transport patterns and the associated transport mechanisms.

A Simple Model of Global Aerosol Indirect Effects

NASA Technical Reports Server (NTRS)

Ghan, Steven J.; Smith, Steven J.; Wang, Minghuai; Zhang, Kai; Pringle, Kirsty; Carslaw, Kenneth; Pierce, Jeffrey; Bauer, Susanne; Adams, Peter

2013-01-01

Most estimates of the global mean indirect effect of anthropogenic aerosol on the Earth's energy balance are from simulations by global models of the aerosol lifecycle coupled with global models of clouds and the hydrologic cycle. Extremely simple models have been developed for integrated assessment models, but lack the flexibility to distinguish between primary and secondary sources of aerosol. Here a simple but more physically based model expresses the aerosol indirect effect (AIE) using analytic representations of cloud and aerosol distributions and processes. Although the simple model is able to produce estimates of AIEs that are comparable to those from some global aerosol models using the same global mean aerosol properties, the estimates by the simple model are sensitive to preindustrial cloud condensation nuclei concentration, preindustrial accumulation mode radius, width of the accumulation mode, size of primary particles, cloud thickness, primary and secondary anthropogenic emissions, the fraction of the secondary anthropogenic emissions that accumulates on the coarse mode, the fraction of the secondary mass that forms new particles, and the sensitivity of liquid water path to droplet number concentration. Estimates of present-day AIEs as low as 5 W/sq m and as high as 0.3 W/sq m are obtained for plausible sets of parameter values. Estimates are surprisingly linear in emissions. The estimates depend on parameter values in ways that are consistent with results from detailed global aerosol-climate simulation models, which adds to understanding of the dependence on AIE uncertainty on uncertainty in parameter values.

Attitude Control System Design for the Solar Dynamics Observatory

NASA Technical Reports Server (NTRS)

Starin, Scott R.; Bourkland, Kristin L.; Kuo-Chia, Liu; Mason, Paul A. C.; Vess, Melissa F.; Andrews, Stephen F.; Morgenstern, Wendy M.

2005-01-01

The Solar Dynamics Observatory mission, part of the Living With a Star program, will place a geosynchronous satellite in orbit to observe the Sun and relay data to a dedicated ground station at all times. SDO remains Sun- pointing throughout most of its mission for the instruments to take measurements of the Sun. The SDO attitude control system is a single-fault tolerant design. Its fully redundant attitude sensor complement includes 16 coarse Sun sensors, a digital Sun sensor, 3 two-axis inertial reference units, 2 star trackers, and 4 guide telescopes. Attitude actuation is performed using 4 reaction wheels and 8 thrusters, and a single main engine nominally provides velocity-change thrust. The attitude control software has five nominal control modes-3 wheel-based modes and 2 thruster-based modes. A wheel-based Safehold running in the attitude control electronics box improves the robustness of the system as a whole. All six modes are designed on the same basic proportional-integral-derivative attitude error structure, with more robust modes setting their integral gains to zero. The paper details the mode designs and their uses.

Effects of temperature segregation on the volumetric and mechanistic properties of asphalt mixtures : research project capsule.

DOT National Transportation Integrated Search

2015-02-01

Material segregation in asphalt mixtures is a non-uniform distribution of coarse : and fine aggregates through its masses, i.e., concentration of coarse materials : in some area and fine materials in others. During construction, the coarse and : fine...

Effect of dust and anthropogenic aerosols on columnar aerosol optical properties over Darjeeling (2200 m asl), eastern Himalayas, India.

PubMed

Chatterjee, Abhijit; Ghosh, Sanjay K; Adak, Anandamay; Singh, Ajay K; Devara, Panuganti C S; Raha, Sibaji

2012-01-01

The loading of atmospheric particulate matter (aerosol) in the eastern Himalaya is mainly regulated by the locally generated anthropogenic aerosols from the biomass burning and by the aerosols transported from the distance sources. These different types of aerosol loading not only affect the aerosol chemistry but also produce consequent signature on the radiative properties of aerosol. An extensive study has been made to study the seasonal variations in aerosol components of fine and coarse mode aerosols and black carbon along with the simultaneous measurements of aerosol optical depth on clear sky days over Darjeeling, a high altitude station (2200 masl) at eastern Himalayas during the year 2008. We observed a heavy loading of fine mode dust component (Ca(2+)) during pre-monsoon (Apr-May) which was higher by 162% than its annual mean whereas during winter (Dec-Feb), the loading of anthropogenic aerosol components mainly from biomass burning (fine mode SO(4)(2-) and black carbon) were higher (76% for black carbon and 96% for fine mode SO(4)(2-)) from their annual means. These high increases in dust aerosols during pre-monsoon and anthropogenic aerosols during winter enhanced the aerosol optical depth by 25 and 40%, respectively. We observed that for every 1% increase in anthropogenic aerosols, AOD increased by 0.55% during winter whereas for every 1% increase in dust aerosols, AOD increased by 0.46% during pre-monsoon. The natural dust transport process (during pre-monsoon) plays as important a role in the radiation effects as the anthropogenic biomass burning (during winter) and their differential effects (rate of increase of the AOD with that of the aerosol concentration) are also very similar. This should be taken into account in proper modeling of the atmospheric environment over eastern Himalayas.

Seasonal variability of carbon in humic-like matter of ambient size-segregated water soluble organic aerosols from urban background environment

NASA Astrophysics Data System (ADS)

Frka, Sanja; Grgić, Irena; Turšič, Janja; Gini, Maria I.; Eleftheriadis, Konstantinos

2018-01-01

Long-term measurements of carbon in HUmic-LIke Substances (HULIS-C) of ambient size-segregated water soluble organic aerosols were performed using a ten-stage low-pressure Berner impactor from December 2014 to November 2015 at an urban background environment in Ljubljana, Slovenia. The mass size distribution patterns of measured species (PM - particulate matter, WSOC - water-soluble organic carbon and HULIS-C) for all seasons were generally tri-modal (primarily accumulation mode) but with significant seasonal variability. HULIS-C was found to have similar distributions as WSOC, with nearly the same mass median aerodynamic diameters (MMADs), except for winter when the HULIS-C size distribution was bimodal. In autumn and winter, the dominant accumulation mode with MMAD at ca. 0.65 μm contributed 83 and 97% to the total HULIS-C concentration, respectively. HULIS-C accounted for a large fraction of WSOC, averaging more than 50% in autumn and 40% in winter. Alternatively, during warmer periods the contributions of ultrafine (27% in summer) and coarse mode (27% in spring) were also substantial. Based on mass size distribution characteristics, HULIS-C was found to be of various sources. In colder seasons, wood burning was confirmed as the most important HULIS source; secondary formation in atmospheric liquid water also contributed significantly, as revealed by the MMADs of the accumulation mode shifting to larger sizes. The distinct difference between the spring and summer ratios of HULIS-C/WSOC in fine particles (ca. 50% in spring, but only 10% in summer) indicated different sources and chemical composition of WSOC in summer (e.g., SOA formation from biogenic volatile organic compounds (BVOCs) via photochemistry). The enlarged amount of HULIS-C in the ultrafine mode in summer suggests that the important contribution was most likely from new particle formation during higher emissions of BVOC due to the vicinity of a mixed deciduous forest; the higher contribution of HULIS-C in the coarse mode demonstrated that beside soil erosion other sources, such as pollen and plant fragments, could also be responsible.

Column Aerosol Optical Properties and Aerosol Radiative Forcing During a Serious Haze-Fog Month over North China Plain in 2013 Based on Ground-Based Sunphotometer Measurements

NASA Technical Reports Server (NTRS)

Che, H.; Xia, X.; Zhu, J.; Li, Z.; Dubovik, O.; Holben, Brent N.; Goloub, P.; Chen, H.; Estelles, V.; Cuevas-Agullo, E.

2014-01-01

In January 2013, North China Plain experienced several serious haze events. Cimel sunphotometer measurements at seven sites over rural, suburban and urban regions of North China Plain from 1 to 30 January 2013 were used to further our understanding of spatial-temporal variation of aerosol optical parameters and aerosol radiative forcing (ARF). It was found that Aerosol Optical Depth at 500 nm (AOD500nm) during non-pollution periods at all stations was lower than 0.30 and increased significantly to greater than 1.00 as pollution events developed. The Angstrom exponent (Alpha) was larger than 0.80 for all stations most of the time. AOD500nm averages increased from north to south during both polluted and non-polluted periods on the three urban sites in Beijing. The fine mode AOD during pollution periods is about a factor of 2.5 times larger than that during the non-pollution period at urban sites but a factor of 5.0 at suburban and rural sites. The fine mode fraction of AOD675nm was higher than 80% for all sites during January 2013. The absorption AOD675nm at rural sites was only about 0.01 during pollution periods, while 0.03-0.07 and 0.01-0.03 during pollution and non-pollution periods at other sites, respectively. Single scattering albedo varied between 0.87 and 0.95 during January 2013 over North China Plain. The size distribution showed an obvious tri-peak pattern during the most serious period. The fine mode effective radius in the pollution period was about 0.01-0.08 microns larger than during nonpollution periods, while the coarse mode radius in pollution periods was about 0.06-0.38 microns less than that during nonpollution periods. The total, fine and coarse mode particle volumes varied by about 0.06-0.34 cu microns, 0.03-0.23 cu microns, and 0.03-0.10 cu microns, respectively, throughout January 2013. During the most intense period (1-16 January), ARF at the surface exceeded -50W/sq m, -180W/sq m, and -200W/sq m at rural, suburban, and urban sites, respectively. The ARF readings at the top of the atmosphere were approximately -30W/sq m in rural and -40-60W/sq m in urban areas.

Closure on the single scattering albedo in the WRF-Chem framework using data from the MILAGRO campaign

NASA Astrophysics Data System (ADS)

Barnard, J. C.; Fast, J. D.; Paredes-Miranda, G.; Arnott, W. P.

2009-02-01

Data from the MILAGRO field campaign, which took place in the Mexico City Metropolitan Area (MCMA) during March 2006, is used to perform a closure experiment between aerosol chemical properties and aerosol optical properties. Measured aerosol chemical properties, obtained from the MILAGRO T1 site, are fed to two different "chemical to optical properties" modules. One module uses a sectional approach and is identical to that used in the WRF-Chem model, while the other is based on a modal approach. This modal code is employed as an independent check on the WRF-Chem module. Both modules compute aerosol optical properties and, in particular, the single-scattering albedo, ϖ0, as a function of time. The single-scattering albedos are compared to independent measurements obtained from a photoacoustic spectrometer (PAS). Because chemical measurements of the aerosol coarse mode were not available, and the inlet of the PAS could not ingest aerosols larger than about 2 to 3 μm, we focus here on the fine-mode ϖ0. At 870 nm, the wavelength of the PAS measurements, the agreement between the computed (modal and WRF-Chem) and observed fine-mode ϖ0, averaged over the course of the campaign, is reasonably good. The observed ϖ0 value is 0.77, while for both modules, the calculated value was 0.75 resulting in a difference of 0.02 between observations and both computational approaches. This difference is less than the uncertainty of the observed ϖ0 values (6%, or 0.05), and therefore "closure" is achieved, at least for mean values. After adjusting some properties of black carbon absorption and mass concentration within plausible uncertainty limits, the two modules simulate well the diurnal variation of ϖ0, and the absorption coefficient, Babs, but are less successful in calculating the variation of the scattering coefficient, Bscat. This difficulty is probably caused by the presence of larger particles during the day when windblown dust is ubiquitous; this dust likely increases the proportion of large particles introduced into the PAS. The dust also contributes to a very large aerosol mass loading in the coarse mode, and neglect of the coarse mode may cause significant errors, estimated to be as large as 0.07, in the calculation and measurement of ambient ϖ0. Finally, the observed ϖ0 is compared to the ϖ0 computed by the full WRF-Chem model, which includes prognostic aerosol chemistry. Unlike the results discussed above, a comparison between observed and simulated ϖ0 values reveals major differences. This large discrepancy is probably due, in part, to poor characterization of emissions near the T1 site, particularly black carbon emissions.

Characteristics of size-fractionated atmospheric metals and water-soluble metals in two typical episodes in Beijing

NASA Astrophysics Data System (ADS)

Wang, Qingqing; Ma, Yongliang; Tan, Jihua; Zheng, Naijia; Duan, Jingchun; Sun, Yele; He, Kebin; Zhang, Yuanxun

2015-10-01

The abundance and behaviour of metals and water-soluble metals (V, Cr, Mn, Fe, Cu, Zn, As, Sr, Ag, Cd, Sn, Sb, Ba and Pb) in size-fractionated aerosols were investigated during two typical episodes in Beijing. Water-soluble inorganic ions (Na+, K+, Mg2+, Ca2+, NH4+, F-, Cl-, SO42- and NO3-) were also measured. Atmospheric metals and water-soluble metals were both found at high levels; for PM2.5, average As, Cr, Cd, Cu, Mn and Pb concentrations were 14.8, 203.3, 2.5, 18.5, 42.6 and 135.3 ng/m3, respectively, and their water-soluble components were 11.1, 1.7, 2.4, 14.5, 19.8 and 97.8 ng/m3, respectively. Daily concentrations of atmospheric metals and water-soluble metals were generally in accordance with particle mass. The highest concentrations of metals and water-soluble metals were generally located in coarse mode and droplet mode, respectively. The lowest mass of metals and water-soluble metals was mostly in Aitken mode. The water solubility of all metals was low in Aitken and coarse modes, indicating that freshly emitted metals have low solubility. Metal water solubility generally increased with the decrease in particle size in the range of 0.26-10 μm. The water solubility of metals for PM10 was: 50% ≤ Cd, As, Sb, Pb; 26% < V, Mn, Cu, Zn and Sr ≤ 50%; others ≤20%. Most metals, water-soluble metals and their water solubility increased when polluted air mass came from the near west, near north-west, south-west and south-east of the mainland, and decreased when clean air mass came from the far north-west and far due south. The influence of dust-storms and clean days on water-soluble metals and size distribution was significant; however, the influence of rainfall was negligible. Aerosols with high concentrations of SO42-, K+ and NH4+ might indicate increased potential for human health effects because of their high correlation with water-soluble metals. Industrial emissions contribute substantially to water-soluble metal pollution as water-soluble metals show higher correlation with Cd, Sn, Sb and Pb that are mainly derived from industrial sources.

Effect of Pulse Parameters on Weld Quality in Pulsed Gas Metal Arc Welding: A Review

NASA Astrophysics Data System (ADS)

Pal, Kamal; Pal, Surjya K.

2011-08-01

The weld quality comprises bead geometry and its microstructure, which influence the mechanical properties of the weld. The coarse-grained weld microstructure, higher heat-affected zone, and lower penetration together with higher reinforcement reduce the weld service life in continuous mode gas metal arc welding (GMAW). Pulsed GMAW (P-GMAW) is an alternative method providing a better way for overcoming these afore mentioned problems. It uses a higher peak current to allow one molten droplet per pulse, and a lower background current to maintain the arc stability. Current pulsing refines the grains in weld fusion zone with increasing depth of penetration due to arc oscillations. Optimum weld joint characteristics can be achieved by controlling the pulse parameters. The process is versatile and easily automated. This brief review illustrates the effect of pulse parameters on weld quality.

Guidelines and Parameter Selection for the Simulation of Progressive Delamination

NASA Technical Reports Server (NTRS)

Song, Kyongchan; Davila, Carlos G.; Rose, Cheryl A.

2008-01-01

Turon s methodology for determining optimal analysis parameters for the simulation of progressive delamination is reviewed. Recommended procedures for determining analysis parameters for efficient delamination growth predictions using the Abaqus/Standard cohesive element and relatively coarse meshes are provided for single and mixed-mode loading. The Abaqus cohesive element, COH3D8, and a user-defined cohesive element are used to develop finite element models of the double cantilever beam specimen, the end-notched flexure specimen, and the mixed-mode bending specimen to simulate progressive delamination growth in Mode I, Mode II, and mixed-mode fracture, respectively. The predicted responses are compared with their analytical solutions. The results show that for single-mode fracture, the predicted responses obtained with the Abaqus cohesive element correlate well with the analytical solutions. For mixed-mode fracture, it was found that the response predicted using COH3D8 elements depends on the damage evolution criterion that is used. The energy-based criterion overpredicts the peak loads and load-deflection response. The results predicted using a tabulated form of the BK criterion correlate well with the analytical solution and with the results predicted with the user-written element.

Improved methods of vibration analysis of pretwisted, airfoil blades

NASA Technical Reports Server (NTRS)

Subrahmanyam, K. B.; Kaza, K. R. V.

1984-01-01

Vibration analysis of pretwisted blades of asymmetric airfoil cross section is performed by using two mixed variational approaches. Numerical results obtained from these two methods are compared to those obtained from an improved finite difference method and also to those given by the ordinary finite difference method. The relative merits, convergence properties and accuracies of all four methods are studied and discussed. The effects of asymmetry and pretwist on natural frequencies and mode shapes are investigated. The improved finite difference method is shown to be far superior to the conventional finite difference method in several respects. Close lower bound solutions are provided by the improved finite difference method for untwisted blades with a relatively coarse mesh while the mixed methods have not indicated any specific bound.

Ultracompact splitter for submicrometer silicon-on-insulator rib waveguides.

PubMed

Koster, Alain; Cassan, Eric; Laval, Suzanne; Vivien, Laurent; Pascal, Daniel

2004-11-01

An ultracompact and efficient 1 x 2 splitter for submicrometer silicon-on-insulator rib waveguides using a star coupler is reported. The structure proposed here is decidedly smaller than the usual splitters such as multi-mode interference or Y-branch devices and much less sensitive to technological fluctuations. Design of the compact splitter is optimized at lambda = 1.31 microm with the effective-index method and a two-dimensional beam-propagation method. The excess losses are lower than 0.15 dB, and the dependence of the losses on wavelength between 1.23 and 1.63 microm is almost flat (variation less than 0.04 dB), which makes the device very interesting for coarse wavelength-division multiplexing applications within the silicon photonic technology.

Effect of temperature, microstructure, and stress state on the low cycle fatigue behavior of Waspaloy

NASA Technical Reports Server (NTRS)

Stahl, D. R.; Antolovich, S. D.; Mirdamadi, M.; Zamrik, S. Y.

1988-01-01

Specimens of Waspaloy of two different microstructures were tested in uniaxial and torsional low-cycle fatigue at 24 and 649 C. For all specimens, deformation and failure mechanisms are found to be independent of stress state at 24 C; in both microstructures, failure is associated with the formation of shear cracks. At 649 C, deformation and failure mechanisms for the fine-grain large gamma-prime specimens are independent of stress state, and the mechanisms are similar to those observed at 24 C. For the coarse-grain small gamma-prime specimens, however, failure occurs on principal planes in torsion and on shear plane in uniaxial tension. The results are interpreted in terms of deformation mode and microstructural instability.

Aerosol optical properties in ultraviolet ranges and respiratory diseases in Thailand

NASA Astrophysics Data System (ADS)

Kumharn, Wilawan; Hanprasert, Kasarin

2016-10-01

This study investigated the values of Angstrom parameters (α,β) in ultraviolet (UV) ranges by using AERONET Aerosol Optical Depth (AOD) data. A second-order polynomial was applied to the AERONET data in order to extrapolate to 320 nm from 2003 to 2013 at seven sites in Thailand. The α,β were derived by applying the Volz Method (VM) and Linear Method (LM) at 320-380 nm at seven monitoring sites in Thailand. Aerosol particles were categorized in both coarse and fine modes, depending on regions. Aerosol loadings were related to dry weather, forest fires, sea salt and most importantly, biomass burning in the North, and South of Thailand. Aerosol particles in the Central region contain coarse and fine modes, mainly emitted from vehicles. The β values obtained were associated with turbid and very turbid skies in Northern and Central regions except Bangkok, while β results are associated with clean skies in South. Higher values of the β at all sites were found in the winter and summer compared with the rainy season, in contrast to South where the highest AOD was observed in June. The β values were likely to increase during 2003-2013. These values correlate with worsening health situations as evident from increasing respiratory diseases reported.

KOSMOS: a universal morph server for nucleic acids, proteins and their complexes.

PubMed

Seo, Sangjae; Kim, Moon Ki

2012-07-01

KOSMOS is the first online morph server to be able to address the structural dynamics of DNA/RNA, proteins and even their complexes, such as ribosomes. The key functions of KOSMOS are the harmonic and anharmonic analyses of macromolecules. In the harmonic analysis, normal mode analysis (NMA) based on an elastic network model (ENM) is performed, yielding vibrational modes and B-factor calculations, which provide insight into the potential biological functions of macromolecules based on their structural features. Anharmonic analysis involving elastic network interpolation (ENI) is used to generate plausible transition pathways between two given conformations by optimizing a topology-oriented cost function that guarantees a smooth transition without steric clashes. The quality of the computed pathways is evaluated based on their various facets, including topology, energy cost and compatibility with the NMA results. There are also two unique features of KOSMOS that distinguish it from other morph servers: (i) the versatility in the coarse-graining methods and (ii) the various connection rules in the ENM. The models enable us to analyze macromolecular dynamics with the maximum degrees of freedom by combining a variety of ENMs from full-atom to coarse-grained, backbone and hybrid models with one connection rule, such as distance-cutoff, number-cutoff or chemical-cutoff. KOSMOS is available at http://bioengineering.skku.ac.kr/kosmos.

Vertical and Tidal Variability of the Floc Size Distribution in a Partially Mixed, Low Turbidity, Anthropogenically Altered Geum River Estuary, Korea

NASA Astrophysics Data System (ADS)

Lee, G. H.; Figueroa, S. M.; Shin, H. J.

2016-12-01

After the construction of the Geum River Estuary dam in 1994, current velocities and water turbidity decreased while the rate of mud deposition doubled, causing the water to become increasingly shallower. To better understand the sediment transport processes in the estuary, profiles of current speed, salinity, and the in-situ floc size distribution were measured during the wet season over three spring tidal cycles in the inner estuary. Although the primary particle size distribution (PPSD) was bimodal clay and coarse silt, the in-situ floc size distribution was observed to be unimodal during conditions promoting flocculation, with a mode (400 um) almost an order of magnitude larger than the coarse silt mode of the PPSD. Sediment resuspension and deflocculation were observed throughout the water column during flood while rapid flocculation and settling were observed in the surface water during calmer slack tides. During ebb, a halocline developed due to tidal straining which trapped macroflocs and created a mid-depth maximum in median floc size. These observations imply periodic stratification is important for floc dynamics even during spring tides and suggests that asymmetry in flocculation during the short term (tidal cycle) could be an important factor in the long term sediment deposition in Geum River Estuary.

Biogenic cloud nuclei in the central Amazon during the transition from wet to dry season

NASA Astrophysics Data System (ADS)

Whitehead, James D.; Darbyshire, Eoghan; Brito, Joel; Barbosa, Henrique M. J.; Crawford, Ian; Stern, Rafael; Gallagher, Martin W.; Kaye, Paul H.; Allan, James D.; Coe, Hugh; Artaxo, Paulo; McFiggans, Gordon

2016-08-01

The Amazon basin is a vast continental area in which atmospheric composition is relatively unaffected by anthropogenic aerosol particles. Understanding the properties of the natural biogenic aerosol particles over the Amazon rainforest is key to understanding their influence on regional and global climate. While there have been a number of studies during the wet season, and of biomass burning particles in the dry season, there has been relatively little work on the transition period - the start of the dry season in the absence of biomass burning. As part of the Brazil-UK Network for Investigation of Amazonian Atmospheric Composition and Impacts on Climate (BUNIAACIC) project, aerosol measurements, focussing on unpolluted biogenic air masses, were conducted at a remote rainforest site in the central Amazon during the transition from wet to dry season in July 2013. This period marks the start of the dry season but before significant biomass burning occurs in the region. Median particle number concentrations were 266 cm-3, with size distributions dominated by an accumulation mode of 130-150 nm. During periods of low particle counts, a smaller Aitken mode could also be seen around 80 nm. While the concentrations were similar in magnitude to those seen during the wet season, the size distributions suggest an enhancement in the accumulation mode compared to the wet season, but not yet to the extent seen later in the dry season, when significant biomass burning takes place. Submicron nonrefractory aerosol composition, as measured by an aerosol chemical speciation monitor (ACSM), was dominated by organic material (around 81 %). Aerosol hygroscopicity was probed using measurements from a hygroscopicity tandem differential mobility analyser (HTDMA), and a quasi-monodisperse cloud condensation nuclei counter (CCNc). The hygroscopicity parameter, κ, was found to be low, ranging from 0.12 for Aitken-mode particles to 0.18 for accumulation-mode particles. This was consistent with previous studies in the region, but lower than similar measurements conducted in Borneo, where κ ranged 0.17-0.37. A wide issue bioaerosol sensor (WIBS-3M) was deployed at ground level to probe the coarse mode, detecting primary biological aerosol by fluorescence (fluorescent biological aerosol particles, or FBAPs). The mean FBAP number concentration was 400 ± 242 L-1; however, this ranged from around 200 L-1 during the day to as much as 1200 L-1 at night. FBAPs dominated the coarse-mode particles, comprising between 55 and 75 % of particles during the day to more than 90 % at night. Non-FBAPs did not show a strong diurnal pattern. Comparison with previous FBAP measurements above canopy at the same location suggests there is a strong vertical gradient in FBAP concentrations through the canopy. Cluster analysis of the data suggests that FBAPs were dominated (around 70 %) by fungal spores. Further, long-term measurements will be required in order to fully examine the seasonal variability and distribution of primary biological aerosol particles through the canopy. This is the first time that such a suite of measurements has been deployed at this site to investigate the chemical composition and properties of the biogenic contributions to Amazonian aerosol during the transition period from the wet to the dry season, and thus provides a unique comparison to the aerosol properties observed during the wet season in previous similar campaigns. This was also the first deployment of a WIBS in the Amazon rainforest to study coarse-mode particles, particularly primary biological aerosol particles, which are likely to play an important role as ice nuclei in the region.

Kinetic theory for DNA melting with vibrational entropy

NASA Astrophysics Data System (ADS)

Sensale, Sebastian; Peng, Zhangli; Chang, Hsueh-Chia

2017-10-01

By treating DNA as a vibrating nonlinear lattice, an activated kinetic theory for DNA melting is developed to capture the breakage of the hydrogen bonds and subsequent softening of torsional and bending vibration modes. With a coarse-grained lattice model, we identify a key bending mode with GHz frequency that replaces the hydrogen vibration modes as the dominant out-of-phase phonon vibration at the transition state. By associating its bending modulus to a universal in-phase bending vibration modulus at equilibrium, we can hence estimate the entropic change in the out-of-phase vibration from near-equilibrium all-atom simulations. This and estimates of torsional and bending entropy changes lead to the first predictive and sequence-dependent theory with good quantitative agreement with experimental data for the activation energy of melting of short DNA molecules without intermediate hairpin structures.

Chemical consequences of the initial diffusional growth of cloud droplets - A clean marine case

NASA Technical Reports Server (NTRS)

Twohy, C. H.; Charlson, R. J.; Austin, P. H.

1989-01-01

A simple microphysical cloud parcel model and a simple representation of the background marine aerosol are used to predict the concentrations and compositions of droplets of various sizes near cloud base. The aerosol consists of an externally-mixed ammonium bisulfate accumulation mode and a sea-salt coarse particle mode. The difference in diffusional growth rates between the small and large droplets as well as the differences in composition between the two aerosol modes result in substantial differences in solute concentration and composition with size of droplets in the parcel. The chemistry of individual droplets is not, in general, representative of the bulk (volume-weighted mean) cloud water sample. These differences, calculated to occur early in the parcel's lifetime, should have important consequences for chemical reactions such as aqueous phase sulfate production.

Fine gravel controls hydrologic and erodibility responses to trampling disturbance for coarse-textured soils with weak cyanobacterial crusts.

USDA-ARS?s Scientific Manuscript database

We compared short-term effects of lug-soled boot trampling disturbance on water infiltration and soil erodibility on coarse-textured soils covered by a mixture of fine gravel and coarse sand over weak cyanobacterially-dominated biological soil crusts. Trampling significantly reduced final infiltrati...

Effects of coarse-graining on the scaling behavior of long-range correlated and anti-correlated signals.

PubMed

Xu, Yinlin; Ma, Qianli D Y; Schmitt, Daniel T; Bernaola-Galván, Pedro; Ivanov, Plamen Ch

2011-11-01

We investigate how various coarse-graining (signal quantization) methods affect the scaling properties of long-range power-law correlated and anti-correlated signals, quantified by the detrended fluctuation analysis. Specifically, for coarse-graining in the magnitude of a signal, we consider (i) the Floor, (ii) the Symmetry and (iii) the Centro-Symmetry coarse-graining methods. We find that for anti-correlated signals coarse-graining in the magnitude leads to a crossover to random behavior at large scales, and that with increasing the width of the coarse-graining partition interval Δ, this crossover moves to intermediate and small scales. In contrast, the scaling of positively correlated signals is less affected by the coarse-graining, with no observable changes when Δ < 1, while for Δ > 1 a crossover appears at small scales and moves to intermediate and large scales with increasing Δ. For very rough coarse-graining (Δ > 3) based on the Floor and Symmetry methods, the position of the crossover stabilizes, in contrast to the Centro-Symmetry method where the crossover continuously moves across scales and leads to a random behavior at all scales; thus indicating a much stronger effect of the Centro-Symmetry compared to the Floor and the Symmetry method. For coarse-graining in time, where data points are averaged in non-overlapping time windows, we find that the scaling for both anti-correlated and positively correlated signals is practically preserved. The results of our simulations are useful for the correct interpretation of the correlation and scaling properties of symbolic sequences.

Effects of coarse-graining on the scaling behavior of long-range correlated and anti-correlated signals

PubMed Central

Xu, Yinlin; Ma, Qianli D.Y.; Schmitt, Daniel T.; Bernaola-Galván, Pedro; Ivanov, Plamen Ch.

2014-01-01

We investigate how various coarse-graining (signal quantization) methods affect the scaling properties of long-range power-law correlated and anti-correlated signals, quantified by the detrended fluctuation analysis. Specifically, for coarse-graining in the magnitude of a signal, we consider (i) the Floor, (ii) the Symmetry and (iii) the Centro-Symmetry coarse-graining methods. We find that for anti-correlated signals coarse-graining in the magnitude leads to a crossover to random behavior at large scales, and that with increasing the width of the coarse-graining partition interval Δ, this crossover moves to intermediate and small scales. In contrast, the scaling of positively correlated signals is less affected by the coarse-graining, with no observable changes when Δ < 1, while for Δ > 1 a crossover appears at small scales and moves to intermediate and large scales with increasing Δ. For very rough coarse-graining (Δ > 3) based on the Floor and Symmetry methods, the position of the crossover stabilizes, in contrast to the Centro-Symmetry method where the crossover continuously moves across scales and leads to a random behavior at all scales; thus indicating a much stronger effect of the Centro-Symmetry compared to the Floor and the Symmetry method. For coarse-graining in time, where data points are averaged in non-overlapping time windows, we find that the scaling for both anti-correlated and positively correlated signals is practically preserved. The results of our simulations are useful for the correct interpretation of the correlation and scaling properties of symbolic sequences. PMID:25392599

Effect of fly ash on the strength of porous concrete using recycled coarse aggregate to replace low-quality natural coarse aggregate

NASA Astrophysics Data System (ADS)

Arifi, Eva; Cahya, Evi Nur; Christin Remayanti, N.

2017-09-01

The performance of porous concrete made of recycled coarse aggregate was investigated. Fly ash was used as cement partial replacement. In this study, the strength of recycled aggregate was coMPared to low quality natural coarse aggregate which has high water absorption. Compression strength and tensile splitting strength test were conducted to evaluate the performance of porous concrete using fly ash as cement replacement. Results have shown that the utilization of recycled coarse aggregate up to 75% to replace low quality natural coarse aggregate with high water absorption increases compressive strength and splitting tensile strength of porous concrete. Using fly ash up to 25% as cement replacement improves compressive strength and splitting tensile strength of porous concrete.

A large coaxial reflection cell for broadband dielectric characterization of coarse-grained materials

NASA Astrophysics Data System (ADS)

Bore, Thierry; Bhuyan, Habibullah; Bittner, Tilman; Murgan, Vignesh; Wagner, Norman; Scheuermann, Alexander

2018-01-01

Knowledge of the frequency-dependent electromagnetic properties of coarse-grained materials is imperative for the successful application of high frequency electromagnetic measurement techniques for near and subsurface monitoring. This paper reports the design, calibration and application of a novel one-port large coaxial cell for broadband complex permittivity measurements of civil engineering materials. It was designed to allow the characterization of heterogeneous material with large aggregate dimensions (up to 28 mm) over a frequency range from 1 MHz-860 MHz. In the first step, the system parameters were calibrated using the measured scattering function in a perfectly known dielectric material in an optimization scheme. In the second step, the method was validated with measurements made on standard liquids. Then the performance of the cell was evaluated on a compacted coarse-grained soil. The dielectric spectra were obtained by means of fitting the measured scattering function using a transverse electromagnetic mode propagation model considering the frequency-dependent complex permittivity. Two scenarios were systematically analyzed and compared. The first scenario consisted of a broadband generalized dielectric relaxation model with two Cole-Cole type relaxation processes related to the interaction of the aqueous phase and the solid phase, a constant high frequency contribution as well as an apparent direct current conductivity term. The second scenario relied on a three-phase theoretical mixture equation which was used in a forward approach in order to calibrate the model. Both scenarios provide almost identical results for the broadband effective complex relative permittivity. The combination of both scenarios suggests the simultaneous estimation of water content, density, bulk and pore water conductivity for road base materials for in situ applications.

Effective connectivity in the neural network underlying coarse-to-fine categorization of visual scenes. A dynamic causal modeling study.

PubMed

Kauffmann, Louise; Chauvin, Alan; Pichat, Cédric; Peyrin, Carole

2015-10-01

According to current models of visual perception scenes are processed in terms of spatial frequencies following a predominantly coarse-to-fine processing sequence. Low spatial frequencies (LSF) reach high-order areas rapidly in order to activate plausible interpretations of the visual input. This triggers top-down facilitation that guides subsequent processing of high spatial frequencies (HSF) in lower-level areas such as the inferotemporal and occipital cortices. However, dynamic interactions underlying top-down influences on the occipital cortex have never been systematically investigated. The present fMRI study aimed to further explore the neural bases and effective connectivity underlying coarse-to-fine processing of scenes, particularly the role of the occipital cortex. We used sequences of six filtered scenes as stimuli depicting coarse-to-fine or fine-to-coarse processing of scenes. Participants performed a categorization task on these stimuli (indoor vs. outdoor). Firstly, we showed that coarse-to-fine (compared to fine-to-coarse) sequences elicited stronger activation in the inferior frontal gyrus (in the orbitofrontal cortex), the inferotemporal cortex (in the fusiform and parahippocampal gyri), and the occipital cortex (in the cuneus). Dynamic causal modeling (DCM) was then used to infer effective connectivity between these regions. DCM results revealed that coarse-to-fine processing resulted in increased connectivity from the occipital cortex to the inferior frontal gyrus and from the inferior frontal gyrus to the inferotemporal cortex. Critically, we also observed an increase in connectivity strength from the inferior frontal gyrus to the occipital cortex, suggesting that top-down influences from frontal areas may guide processing of incoming signals. The present results support current models of visual perception and refine them by emphasizing the role of the occipital cortex as a cortical site for feedback projections in the neural network underlying coarse-to-fine processing of scenes. Copyright © 2015 Elsevier Inc. All rights reserved.

Multiscale Monte Carlo equilibration: Two-color QCD with two fermion flavors

DOE PAGES

Detmold, William; Endres, Michael G.

2016-12-02

In this study, we demonstrate the applicability of a recently proposed multiscale thermalization algorithm to two-color quantum chromodynamics (QCD) with two mass-degenerate fermion flavors. The algorithm involves refining an ensemble of gauge configurations that had been generated using a renormalization group (RG) matched coarse action, thereby producing a fine ensemble that is close to the thermalized distribution of a target fine action; the refined ensemble is subsequently rethermalized using conventional algorithms. Although the generalization of this algorithm from pure Yang-Mills theory to QCD with dynamical fermions is straightforward, we find that in the latter case, the method is susceptible tomore » numerical instabilities during the initial stages of rethermalization when using the hybrid Monte Carlo algorithm. We find that these instabilities arise from large fermion forces in the evolution, which are attributed to an accumulation of spurious near-zero modes of the Dirac operator. We propose a simple strategy for curing this problem, and demonstrate that rapid thermalization--as probed by a variety of gluonic and fermionic operators--is possible with the use of this solution. Also, we study the sensitivity of rethermalization rates to the RG matching of the coarse and fine actions, and identify effective matching conditions based on a variety of measured scales.« less

An analysis of the Hubble Space Telescope fine guidance sensor fine lock mode

NASA Technical Reports Server (NTRS)

Taff, L. G.

1991-01-01

There are two guiding modes of the Hubble Space Telescope (HST) used for the acquisition of astronomical data by one of its six scientific instruments. The more precise one is called Fine Lock. Command and control problems in the onboard electronics has limited Fine Lock to brighter stars, V less than 13.0 mag, instead of fulfilling its goal of V = 14.5 mag. Consequently, the less precise guiding mode of Coarse Track (approximately 40 milli-arc seconds) has to be used fairly frequently. Indeed, almost half of the scientific observations to have been made with the HST will be compromised. The only realistic or extensive simulations of the Fine Lock guidance mode are reported. The theoretical analysis underlying the Monte Carlo experiments and the numerical computations clearly show both that the control electronics are severely under-engineered and how to adjust the various control parameters to successfully extend Fine Lock guiding performance back to V = 14.0 mag and sometimes beyond.

Multiparameter bifurcations and mixed-mode oscillations in Q-switched CO2 lasers.

PubMed

Doedel, Eusebius J; Pando L, Carlos L

2014-05-01

We study the origin of mixed-mode oscillations and related bifurcations in a fully molecular laser model that describes CO2 monomode lasers with a slow saturable absorber. Our study indicates that the presence of isolas of periodic mixed-mode oscillations, as the pump parameter and the cavity-frequency detuning change, is inherent to Q-switched CO2 monomode lasers. We compare this model, known as the dual four-level model, to the more conventional 3:2 model and to a CO2 laser model for fast saturable absorbers. In these models, we find similarities as well as qualitative differences, such as the different nature of the homoclinic tangency to a relevant unstable periodic orbit, where the Gavrilov-Shilnikov theory and its extensions may hold. We also show that there are isolas of periodic mixed-mode oscillations in a model for CO2 lasers with modulated losses, as the pump parameter varies. The coarse-grained bifurcation diagrams of the periodic mixed-mode oscillations in these models suggest that these oscillations belong to similar classes.

On the applicability of density dependent effective interactions in cluster-forming systems

NASA Astrophysics Data System (ADS)

Montes-Saralegui, Marta; Kahl, Gerhard; Nikoubashman, Arash

2017-02-01

We systematically studied the validity and transferability of the force-matching algorithm for computing effective pair potentials in a system of dendritic polymers, i.e., a particular class of ultrasoft colloids. We focused on amphiphilic dendrimers, macromolecules which can aggregate into clusters of overlapping particles to minimize the contact area with the surrounding implicit solvent. Simulations were performed for both the monomeric and coarse-grained models in the liquid phase at densities ranging from infinite dilution up to values close to the freezing point. The effective pair potentials for the coarse-grained simulations were computed from the monomeric simulations both in the zero-density limit (Φeff0) and at each investigated finite density (Φeff). Conducting the coarse-grained simulations with Φeff0 at higher densities is not appropriate as they failed at reproducing the structural properties of the monomeric simulations. In contrast, we found excellent agreement between the spatial dendrimer distributions obtained from the coarse-grained simulations with Φeff and the microscopically detailed simulations at low densities, where the macromolecules were distributed homogeneously in the system. However, the reliability of the coarse-grained simulations deteriorated significantly as the density was increased further and the cluster occupation became more polydisperse. Under these conditions, the effective pair potential of the coarse-grained model can no longer be computed by averaging over the whole system, but the local density needs to be taken into account instead.

Comparative cardiopulmonary effects of size-fractionated airborne particulate matter.

PubMed

Amatullah, Hajera; North, Michelle L; Akhtar, Umme S; Rastogi, Neeraj; Urch, Bruce; Silverman, Frances S; Chow, Chung-Wai; Evans, Greg J; Scott, Jeremy A

2012-02-01

Strong epidemiological evidence exists linking particulate matter (PM) exposures with hospital admissions of individuals for cardiopulmonary symptoms. The PM size is important in influencing the extent of infiltration into the respiratory tract and systemic circulation and directs the differential physiological impacts. To investigate the differential effects of the quasi-ultrafine (PM(0.2)), fine (PM(0.15-2.5)), and coarse PM (PM(2.5-10)) size fractions on pulmonary and cardiac function. Female BALB/c mice were exposed to HEPA-filtered laboratory air or concentrated coarse, fine, or quasi-ultrafine PM using Harvard Ambient Particle Concentrators in conjunction with our nose-only exposure system. These exposures were conducted as part of the "Health Effects of Aerosols in Toronto (HEAT)" campaign. Following a 4 h exposure, mice underwent assessment of respiratory function and recording of electrocardiograms using the flexiVent® system. Exposure to coarse and fine PM resulted in a significant reduction in quasistatic compliance of the lung. Baseline total respiratory resistance and maximum responsiveness to methacholine were augmented after coarse PM exposures but were not affected by quasi-ultrafine PM exposures. In contrast, quasi-ultrafine PM alone had a significant effect on heart rate and in reducing heart rate variability. These findings indicate that coarse and fine PM influence lung function and airways responsiveness, while ultrafine PM can perturb cardiac function. This study supports the hypothesis that coarse and fine PM exerts its predominant physiologic effects at the site of deposition in the airways, whereas ultrafine PM likely crosses the alveolar epithelial barrier into the systemic circulation to affect cardiovascular function.

Mode-coupling theoretical study on the roles of heterogeneous structure in rheology of ionic liquids.

PubMed

Yamaguchi, Tsuyoshi

2016-03-28

Theoretical calculations of the rheological properties of coarse-grained model ionic liquids were performed using mode-coupling theory. The nonpolar part of the cation was systematically increased in order to clarify the effects of the heterogeneous structure on shear viscosity. The shear viscosity showed a minimum as the function of the size of the nonpolar part, as had been reported in literatures. The minimum was ascribed to the interplay between the increase in the shear relaxation time and the decrease in the high-frequency shear modulus with increasing the size of the nonpolar part of the cation. The ionic liquids with symmetric charge distribution of cations were less viscous than those with asymmetric cations, which is also in harmony with experiments. The theoretical analysis demonstrated that there are two mechanisms for the higher viscosity of the asymmetric model. The first one is the direct coupling between the domain dynamics and the shear stress. The second one is that the microscopic dynamics within the polar domain is retarded due to the nonlinear coupling with the heterogeneous structure.

Breadboard stellar tracker system test report, volume 2

NASA Technical Reports Server (NTRS)

1981-01-01

Complete data from a test program designed to evaluate the performance of a star tracker, a breadboard tracker system, is presented in tabular form. All data presented was normalized to the pixel dimension of 20 micrometers. Data from determination of maximum spatial noise as it applies to the coarse and fine acquisition modes is presented. Pointing accuracy test data, raw pixel data for the track cycle, and data from equipment related tests is also presented.

Development and Application of a Three-dimensional Seismo-acoustic Coupled-mode Model

DTIC Science & Technology

2014-09-30

of coral reef fish need to locate a reef , and sound emanating from reefs may act as a cue to guide them. Using acoustic data collected from Bahia...approximate the solution to the wave equation. RELATED PROJECTS Geoacoustic inversion in three-dimensional environments The goal of this project is...shear wave speed Under this project an laboratory measurements the compressional and shear wave speeds and attenuations in coarse and fine grained

[Intervention of coarse cereals on lipid metabolism in rats].

PubMed

Guo, Yanbo; Zhai, Chengkai; Wang, Yanli; Zhang, Qun; Ding, Zhoubo; Jin, Xin

2010-03-01

To observe the effect of coarse cereals on improving the disorder of lipid metabolism and the expression of PPARgamma mRNA in white adipose tissue in rats to investigate the mechanism of coarse cereals on lipid metabolism disorder. Forty four SPF rats were randomly divided into 4 groups: the negative control group was fed with normal diet and 3 experimental groups were fed with high-fat modeling diet for 6 weeks for model building. The 3 experimental groups, the coarse cereals group,rice-flour group and the hyperlipemia model group, were then fed with coarse cereals high-fat diet,rice-flour high-diet and high-fat modeling diet respectively for another 15 weeks. Compared with the hyperlipemia modeling group, serum TG, TC, IL-6 and TNF-alpha in the coarse cereals group were declined significantly (P < 0.05), serum HDL-C in coarse cereals group was higher than that in rice-flour group and hyperlipemia model group (P < 0.05), LPL, HL and TNF-alpha in coarse cereal group were close to the negative control group. Moreover, the expression of PPAR-gamma mRNA in white adipose tissue of the coarse cereals group was higher than other groups. The coarse cereals could activate PPARgamma and enhance the activity of key enzymes in lipids metabolism, so as to reduce the level of TG relieve inflammation and improve lipid dysmetabolism eventually.

Indoor organic and inorganic pollutants: In-situ formation and dry deposition in Southeastern Brazil

NASA Astrophysics Data System (ADS)

Allen, Andrew G.; Miguel, Antonio H.

We have measured indoor and outdoor levels of particle- and gas-phase pollutants, collected in offices, restaurants and a hotel at six different sites in and around the cities of São Paulo and Campinas, Brazil, during summer 1993. Gas-phase species included acetic acid, formic acid, nitrous acid, hydrochloric acid, sulfur dioxide, nitric acid, oxalic acid, and pyruvic acid. Fine mode (< 3 μm dp) and coarse mode (> 3 μm dp) species measured included chloride, potassium, acetate, nitrate, magnesium, formate, sodium, pyruvate, nitrite, calcium, sulfate, oxalate, and ammonium. One sample (˜ 6 h) was simultaneously collected indoors and outdoors at each site during regular working hours. Indoor samplers were located ca. 1.5 m from the floor, and the outdoors immediately outside the window. Indoor/outdoor concentration ratios suggest that fine potassium chloride was produced indoors in appreciable amounts at both restaurants studied and, to a lesser extent, in the three offices as well. Indoor fine nitrate particles found in restaurants appear to have been produced by fuel combustion; a small fraction may have resulted from dry deposition of nitric acid onto existing fine particles. Indoor and outdoor concentrations of fine- and coarse-mode acetate suggest their production at all sites. The average concentration of gas-phase acetic acid was 42 μg m -3 indoors compared to 9.0 μg m -3 outdoors. In-situ formation of nitrous acid and acetic acid appears to have occurred at all indoor sites. High levels of formic and acetic acids were produced indoors at a pizzeria that used wood for cooking. Nitrous acid average concentrations for all sites were 8.4 μm m -3 indoors and 3.2 μm m -3 outdoors. Indoor/outdoor ratios at all sites suggest that dry deposition indoors may have occurred for hydrochloric acid, nitric acid and sulfur dioxide and that fine-mode sulfate infiltrate buildings from outside at most sites.

Development of a generalized algorithm of satellite remote sensing using multi-wavelength and multi-pixel information (MWP method) for aerosol properties by satellite-borne imager

NASA Astrophysics Data System (ADS)

Hashimoto, M.; Nakajima, T.; Morimoto, S.; Takenaka, H.

2014-12-01

We have developed a new satellite remote sensing algorithm to retrieve the aerosol optical characteristics using multi-wavelength and multi-pixel information of satellite imagers (MWP method). In this algorithm, the inversion method is a combination of maximum a posteriori (MAP) method (Rodgers, 2000) and the Phillips-Twomey method (Phillips, 1962; Twomey, 1963) as a smoothing constraint for the state vector. Furthermore, with the progress of computing technique, this method has being combined with the direct radiation transfer calculation numerically solved by each iteration step of the non-linear inverse problem, without using LUT (Look Up Table) with several constraints.Retrieved parameters in our algorithm are aerosol optical properties, such as aerosol optical thickness (AOT) of fine and coarse mode particles, a volume soot fraction in fine mode particles, and ground surface albedo of each observed wavelength. We simultaneously retrieve all the parameters that characterize pixels in each of horizontal sub-domains consisting the target area. Then we successively apply the retrieval method to all the sub-domains in the target area.We conducted numerical tests for the retrieval of aerosol properties and ground surface albedo for GOSAT/CAI imager data to test the algorithm for the land area. The result of the experiment showed that AOTs of fine mode and coarse mode, soot fraction and ground surface albedo are successfully retrieved within expected accuracy. We discuss the accuracy of the algorithm for various land surface types. Then, we applied this algorithm to GOSAT/CAI imager data, and we compared retrieved and surface-observed AOTs at the CAI pixel closest to an AERONET (Aerosol Robotic Network) or SKYNET site in each region. Comparison at several sites in urban area indicated that AOTs retrieved by our method are in agreement with surface-observed AOT within ±0.066.Our future work is to extend the algorithm for analysis of AGEOS-II/GLI and GCOM/C-SGLI data.

Sequence-dependent nucleosome sliding in rotation-coupled and uncoupled modes revealed by molecular simulations

PubMed Central

Tan, Cheng; Takada, Shoji

2017-01-01

While nucleosome positioning on eukaryotic genome play important roles for genetic regulation, molecular mechanisms of nucleosome positioning and sliding along DNA are not well understood. Here we investigated thermally-activated spontaneous nucleosome sliding mechanisms developing and applying a coarse-grained molecular simulation method that incorporates both long-range electrostatic and short-range hydrogen-bond interactions between histone octamer and DNA. The simulations revealed two distinct sliding modes depending on the nucleosomal DNA sequence. A uniform DNA sequence showed frequent sliding with one base pair step in a rotation-coupled manner, akin to screw-like motions. On the contrary, a strong positioning sequence, the so-called 601 sequence, exhibits rare, abrupt transitions of five and ten base pair steps without rotation. Moreover, we evaluated the importance of hydrogen bond interactions on the sliding mode, finding that strong and weak bonds favor respectively the rotation-coupled and -uncoupled sliding movements. PMID:29194442

Aerosol Optical Depth Distribution in Extratropical Cyclones over the Northern Hemisphere Oceans

NASA Technical Reports Server (NTRS)

Naud, Catherine M.; Posselt, Derek J.; van den Heever, Susan C.

2016-01-01

Using Moderate Resolution Imaging Spectroradiometer and an extratropical cyclone database,the climatological distribution of aerosol optical depth (AOD) in extratropical cyclones is explored based solely on observations. Cyclone-centered composites of aerosol optical depth are constructed for the Northern Hemisphere mid-latitude ocean regions, and their seasonal variations are examined. These composites are found to be qualitatively stable when the impact of clouds and surface insolation or brightness is tested. The larger AODs occur in spring and summer and are preferentially found in the warm frontal and in the post-cold frontal regions in all seasons. The fine mode aerosols dominate the cold sector AODs, but the coarse mode aerosols display large AODs in the warm sector. These differences between the aerosol modes are related to the varying source regions of the aerosols and could potentially have different impacts on cloud and precipitation within the cyclones.

Nanoscale swimmers: hydrodynamic interactions and propulsion of molecular machines

NASA Astrophysics Data System (ADS)

Sakaue, T.; Kapral, R.; Mikhailov, A. S.

2010-06-01

Molecular machines execute nearly regular cyclic conformational changes as a result of ligand binding and product release. This cyclic conformational dynamics is generally non-reciprocal so that under time reversal a different sequence of machine conformations is visited. Since such changes occur in a solvent, coupling to solvent hydrodynamic modes will generally result in self-propulsion of the molecular machine. These effects are investigated for a class of coarse grained models of protein machines consisting of a set of beads interacting through pair-wise additive potentials. Hydrodynamic effects are incorporated through a configuration-dependent mobility tensor, and expressions for the propulsion linear and angular velocities, as well as the stall force, are obtained. In the limit where conformational changes are small so that linear response theory is applicable, it is shown that propulsion is exponentially small; thus, propulsion is nonlinear phenomenon. The results are illustrated by computations on a simple model molecular machine.

MECHANISMS BY WHICH ULTRAFINE, FINE, AND COARSE PARTICLES CAUSE ADVERSE HEALTH EFFECTS

EPA Science Inventory

A small number of recent studies suggest that different size particles may cause different health effects. There are clearly differences in the chemical makeup of coarse, fine, and ultrafine particles, and this different chemistry may well drive different health responses. The ...

Secular instabilities of Keplerian stellar discs

NASA Astrophysics Data System (ADS)

Kaur, Karamveer; Kazandjian, Mher V.; Sridhar, S.; Touma, Jihad R.

2018-05-01

We present idealized models of a razor-thin, axisymmetric, Keplerian stellar disc around a massive black hole, and study non-axisymmetric secular instabilities in the absence of either counter-rotation or loss cones. These discs are prograde mono-energetic waterbags, whose phase-space distribution functions are constant for orbits within a range of eccentricities (e) and zero outside this range. The linear normal modes of waterbags are composed of sinusoidal disturbances of the edges of distribution function in phase space. Waterbags that include circular orbits (polarcaps) have one stable linear normal mode for each azimuthal wavenumber m. The m = 1 mode always has positive pattern speed and, for polarcaps consisting of orbits with e < 0.9428, only the m = 1 mode has positive pattern speed. Waterbags excluding circular orbits (bands) have two linear normal modes for each m, which can be stable or unstable. We derive analytical expressions for the instability condition, pattern speeds, growth rates, and normal mode structure. Narrow bands are unstable to modes with a wide range in m. Numerical simulations confirm linear theory and follow the non-linear evolution of instabilities. Long-time integration suggests that instabilities of different m grow, interact non-linearly, and relax collisionlessly to a coarse-grained equilibrium with a wide range of eccentricities.

An Analysis Technique/Automated Tool for Comparing and Tracking Analysis Modes of Different Finite Element Models

NASA Technical Reports Server (NTRS)

Towner, Robert L.; Band, Jonathan L.

2012-01-01

An analysis technique was developed to compare and track mode shapes for different Finite Element Models. The technique may be applied to a variety of structural dynamics analyses, including model reduction validation (comparing unreduced and reduced models), mode tracking for various parametric analyses (e.g., launch vehicle model dispersion analysis to identify sensitivities to modal gain for Guidance, Navigation, and Control), comparing models of different mesh fidelity (e.g., a coarse model for a preliminary analysis compared to a higher-fidelity model for a detailed analysis) and mode tracking for a structure with properties that change over time (e.g., a launch vehicle from liftoff through end-of-burn, with propellant being expended during the flight). Mode shapes for different models are compared and tracked using several numerical indicators, including traditional Cross-Orthogonality and Modal Assurance Criteria approaches, as well as numerical indicators obtained by comparing modal strain energy and kinetic energy distributions. This analysis technique has been used to reliably identify correlated mode shapes for complex Finite Element Models that would otherwise be difficult to compare using traditional techniques. This improved approach also utilizes an adaptive mode tracking algorithm that allows for automated tracking when working with complex models and/or comparing a large group of models.

Evaluation of ultrasonic array imaging algorithms for inspection of a coarse grained material

NASA Astrophysics Data System (ADS)

Van Pamel, A.; Lowe, M. J. S.; Brett, C. R.

2014-02-01

Improving the ultrasound inspection capability for coarse grain metals remains of longstanding interest to industry and the NDE research community and is expected to become increasingly important for next generation power plants. A test sample of coarse grained Inconel 625 which is representative of future power plant components has been manufactured to test the detectability of different inspection techniques. Conventional ultrasonic A, B, and C-scans showed the sample to be extraordinarily difficult to inspect due to its scattering behaviour. However, in recent years, array probes and Full Matrix Capture (FMC) imaging algorithms, which extract the maximum amount of information possible, have unlocked exciting possibilities for improvements. This article proposes a robust methodology to evaluate the detection performance of imaging algorithms, applying this to three FMC imaging algorithms; Total Focusing Method (TFM), Phase Coherent Imaging (PCI), and Decomposition of the Time Reversal Operator with Multiple Scattering (DORT MSF). The methodology considers the statistics of detection, presenting the detection performance as Probability of Detection (POD) and probability of False Alarm (PFA). The data is captured in pulse-echo mode using 64 element array probes at centre frequencies of 1MHz and 5MHz. All three algorithms are shown to perform very similarly when comparing their flaw detection capabilities on this particular case.

Hemodynamic, Autonomic, and Vascular Effects of Exposure to Coarse Particulate Matter Air Pollution from a Rural Location

PubMed Central

Bard, Robert L.; Morishita, Masako; Dvonch, J. Timothy; Wang, Lu; Yang, Hui-yu; Spino, Catherine; Mukherjee, Bhramar; Kaplan, Mariana J.; Yalavarthi, Srilakshmi; Oral, Elif A.; Ajluni, Nevin; Sun, Qinghua; Harkema, Jack; Rajagopalan, Sanjay

2014-01-01

Background: Fine particulate matter (PM) air pollution is associated with numerous adverse health effects, including increased blood pressure (BP) and vascular dysfunction. Coarse PM substantially contributes to global air pollution, yet differs in characteristics from fine particles and is currently not regulated. However, the cardiovascular (CV) impacts of coarse PM exposure remain largely unknown. Objectives: Our goal was to elucidate whether coarse PM, like fine PM, is itself capable of eliciting adverse CV responses. Methods: We performed a randomized double-blind crossover study in which 32 healthy adults (25.9 ± 6.6 years of age) were exposed to concentrated ambient coarse particles (CAP; 76.2 ± 51.5 μg/m3) in a rural location and filtered air (FA) for 2 hr. We measured CV outcomes during, immediately after, and 2 hr postexposures. Results: Both systolic (mean difference = 0.32 mmHg; 95% CI: 0.05, 0.58; p = 0.021) and diastolic BP (0.27 mmHg; 95% CI: 0.003, 0.53; p = 0.05) linearly increased per 10 min of exposure during the inhalation of coarse CAP when compared with changes during FA exposure. Heart rate was on average higher (4.1 bpm; 95% CI: 3.06, 5.12; p < 0.0001) and the ratio of low-to-high frequency heart rate variability increased (0.24; 95% CI: 0.07, 0.41; p = 0.007) during coarse particle versus FA exposure. Other outcomes (brachial flow-mediated dilatation, microvascular reactive hyperemia index, aortic hemodynamics, pulse wave velocity) were not differentially altered by the exposures. Conclusions: Inhalation of coarse PM from a rural location is associated with a rapid elevation in BP and heart rate during exposure, likely due to the triggering of autonomic imbalance. These findings add mechanistic evidence supporting the biological plausibility that coarse particles could contribute to the triggering of acute CV events. Citation: Brook RD, Bard RL, Morishita M, Dvonch JT, Wang L, Yang HY, Spino C, Mukherjee B, Kaplan MJ, Yalavarthi S, Oral EA, Ajluni N, Sun Q, Brook JR, Harkema J, Rajagopalan S. 2014. Hemodynamic, autonomic, and vascular effects of exposure to coarse particulate matter air pollution from a rural location. Environ Health Perspect 122:624–630; http://dx.doi.org/10.1289/ehp.1306595 PMID:24618231

Injection of mineral dust into the free troposphere during fire events observed with polarization lidar at Limassol, Cyprus

NASA Astrophysics Data System (ADS)

Nisantzi, A.; Mamouri, R. E.; Ansmann, A.; Hadjimitsis, D.

2014-06-01

Four-year observations (2010-2014) with EARLINET polarization lidar and AERONET sun/sky photometer at Limassol (34.7° N, 33° E), Cyprus, were used to study the soil dust content in lofted fire smoke plumes advected from Turkey. This first systematic attempt to characterize less than 3 days old smoke plumes in terms of particle depolarization contributes to the more general effort to properly describe the life cycle of free-tropospheric smoke-dust mixtures from the emission event to phases of long-range transport (>4 days after emission). We found significant differences in the particle depolarization ratio (PDR) with values from 9-18% in lofted aerosol layers when Turkish fires contributed to the aerosol burden and of 3-13% when Turkish fires were absent. High Ångström exponents of 1.4-2.2 during all these events with lofted smoke layers, occuring between 1 and 3 km height, suggest the absence of a pronounced particle coarse mode. When plotted vs. the travel time (spatial distance between Limassol and last fire area), PDR decreased strongly from initial values around 16-18% (one day travel) to 4-8% after 4 days of travel caused by deposition processes. This behavior was found to be in close agreement with the literature. Computation of particle extinction coefficient and mass concentrations, separately for fine-mode dust, coarse-mode dust, and non-dust aerosol components show extinction-related dust fractions of the order of 10% (for PDR = 4%, travel times >4 days) and 50% (PDR = 15%, one day travel time) and mass-related dust fractions of 25% (PDR = 4%) to 80% (PDR = 15%). Biomass burning should be considered as another source of free tropospheric soil dust.

Seasonal variations and size distributions of water-soluble ions of atmospheric particulate matter at Shigatse, Tibetan Plateau.

PubMed

Yang, Yongjie; Zhou, Rui; Yan, Yan; Yu, Yue; Liu, Junqing; Di, Yi'an; Du, Zhenyu; Wu, Dan

2016-02-01

Size-segregated atmospheric particulate matter (PM) samples were collected from July 2012 to September 2013 at Shigatse, high-altitude (3836 m above sea level) site on the south Tibetan Plateau (TP); objectives were to determine the characteristics and size distribution of water-soluble ions (WSIs). Eight major WSIs (Na(+), K(+), Mg(2+), Ca(2+), NH4(+), Cl(-), SO4(2-), and NO3(-)) were detected by ion chromatography. The total concentrations of WSIs were 6370 ± 1916 ng m(-3) in dry season (October - December, January - April), and 5261 ± 769 ng/m(3) during wet phase (May - September). The contribution of K(+) (130 ng m(-3)), Cl(-) (2035 ng m(-3)), SO4(2-) (1176 ng m(-3)), and NO3(-) (706 ng m(-3))(-)were significantly enhanced in dry season, and that of Na(+) (455 ng m(-3)), Mg(2+)(65.4 ng m(-3)), Ca(2+)(1034 ng m(-3)), and NH4(+) (1948 ng m(-3)) were significantly enhanced during wet phase. Mg(2+) and Ca(2+) were concentrated in the coarse mode, and the other ions concentrated in fine mode and coarse mode during two seasons. The correlation coefficients between K(+) and NH4(+), Cl(-), SO4(2-) and NO3(-) were 0.58 (P < 0.01), 0.40 (P < 0.05), 0.82 (P < 0.01) and 0.69 (P < 0.01), indicating their dominant contribution from biomass burning in dry season. The significant correlation between NH4(+) and HCO3(-) which were calculated by ion balance (r = 0.89, P < 0.01), suggesting the source from nitrogen fertilizers during wet phase. Copyright © 2015 Elsevier Ltd. All rights reserved.

Chemical characteristics and source of size-fractionated atmospheric particle in haze episode in Beijing

NASA Astrophysics Data System (ADS)

Tan, Jihua; Duan, Jingchun; Zhen, Naijia; He, Kebin; Hao, Jiming

2016-01-01

The abundance, behavior, and source of chemical species in size-fractionated atmospheric particle were studied with a 13-stage low pressure impactor (ELPI) during high polluted winter episode in Beijing. Thirty three elements (Al, Ca, Fe, K, Mg, Na, Si, Sc, Ti, V, Cr, Mn, Co, Ni, Cu, Zn, Ga, Ge, As, Se, Sr, Zr, Mo, Ag, Cd, In, Sn, Sb, Cs, Ba, Hg, Tl, and Pb) and eight water soluble ions (Cl-, NO3-, SO42 -, NH4+, Na+, K+, Ca2 +, and Mg2 +) were determined by ICP/MS and IC, respectively. The size distribution of TC (OC + EC) was reconstructed. Averagely, 51.5 ± 5.3% and 74.1 ± 3.7% of the total aerosol mass was distributed in the sub-micron (PM1) and fine particle (PM2.5), respectively. A significant shift to larger fractions during heavy pollution episode was observed for aerosol mass, NH4+, SO42 -, NO3-, K, Fe, Cu, Zn, Cd, and Pb. The mass size distributions of NH4+, SO42 -, NO3-, and K were dominated by accumulation mode. Size distributions of elements were classified into four main types: (I) elements were enriched within the accumulation mode (< 1 μm, Ge, Se, Ag, Sn, Sb, Cs, Hg, Ti, and Pb); (II) those mass (K, Cr, Mn, Cu, Zn, As, Mo, and Cd) was resided mainly within the accumulation mode, ranged from 1 to 2 μm; (III) Na, V, Co, Ni, and Ga were distributed among fine, intermediate, and coarse modes; and (IV) those which were mainly found within particles larger than 2.7 μm (Al, Mg, Si, Ca, Sc, Tl, Fe, Sr, Zr, and Ba). [H+]cor showed an accumulation mode at 600-700 nm and the role of Ca2 + should be fully considered in the estimation of acidity. The acidity in accumulation mode particles suggested that generally gaseous NH3 was not enough to neutralize sulfate completely. PMF method was applied for source apportionment of elements combined with water soluble ions. Dust, vehicle, aged coal combustion, and sea salt were identified, and the size resolved source apportionments were discussed. Aged coal combustion was the important source of fine particles and dust contributed most to coarse particle.

Indirect estimation of absorption properties for fine aerosol particles using AATSR observations: a case study of wildfires in Russia in 2010

NASA Astrophysics Data System (ADS)

Rodriguez, E.; Kolmonen, P.; Virtanen, T. H.; Sogacheva, L.; Sundstrom, A.-M.; de Leeuw, G.

2015-08-01

The Advanced Along-Track Scanning Radiometer (AATSR) on board the ENVISAT satellite is used to study aerosol properties. The retrieval of aerosol properties from satellite data is based on the optimized fit of simulated and measured reflectances at the top of the atmosphere (TOA). The simulations are made using a radiative transfer model with a variety of representative aerosol properties. The retrieval process utilizes a combination of four aerosol components, each of which is defined by their (lognormal) size distribution and a complex refractive index: a weakly and a strongly absorbing fine-mode component, coarse mode sea salt aerosol and coarse mode desert dust aerosol). These components are externally mixed to provide the aerosol model which in turn is used to calculate the aerosol optical depth (AOD). In the AATSR aerosol retrieval algorithm, the mixing of these components is decided by minimizing the error function given by the sum of the differences between measured and calculated path radiances at 3-4 wavelengths, where the path radiances are varied by varying the aerosol component mixing ratios. The continuous variation of the fine-mode components allows for the continuous variation of the fine-mode aerosol absorption. Assuming that the correct aerosol model (i.e. the correct mixing fractions of the four components) is selected during the retrieval process, also other aerosol properties could be computed such as the single scattering albedo (SSA). Implications of this assumption regarding the ratio of the weakly/strongly absorbing fine-mode fraction are investigated in this paper by evaluating the validity of the SSA thus obtained. The SSA is indirectly estimated for aerosol plumes with moderate-to-high AOD resulting from wildfires in Russia in the summer of 2010. Together with the AOD, the SSA provides the aerosol absorbing optical depth (AAOD). The results are compared with AERONET data, i.e. AOD level 2.0 and SSA and AAOD inversion products. The RMSE (root mean square error) is 0.03 for SSA and 0.02 for AAOD lower than 0.05. The SSA is further evaluated by comparison with the SSA retrieved from the Ozone Monitoring Instrument (OMI). The SSA retrieved from both instruments show similar features, with generally lower AATSR-estimated SSA values over areas affected by wildfires.

CONCENTRATED COARSE AIR PARTICLE EXPOSURE PRODUCES MILD TOXICOLOGICAL EFFECTS IN HEALTHY VOLUNTEERS

EPA Science Inventory

Epidemiological studies have shown that the adverse health effects of ambient particulate matter (PM) exposure to be in general more strongly associated with "fine" PM (<2.5 µM) originating from combustion processes than for "coarse" PM (>2.5 µM) from wind-blown dust, mechanical ...

SEASONAL EFFECTS OF ULTRAFINE, FINE, AND COARSE PARTICULATE MATTER (PM) ON HUMAN PRIMARY AIRWAY EPITHELIAL CELLS

EPA Science Inventory

SEASONAL EFFECTS OF ULTRAFINE, FINE, AND COARSE PARTICULATE MATTER (PM) ON HUMAN PRIMARY AIRWAY EPITHELIAL CELLS

Exposure of humans to PM results in increased mortality and morbidity. Recent toxicology studies have shown a number of pathophysiological pulmonary and car...

Aerosol Chemistry of Furfural and Sugars

NASA Astrophysics Data System (ADS)

Srithawirat, T.; Brimblecombe, P.

2008-12-01

Furfural and sugars (as levoglucosan equivalent) are derived from biomass burning and contribute to aerosol composition. This study examined the potential of furfural and levoglucosan to be tracers of biomass burning. Furfural is likely to be oxidized quickly so comparison with levoglucosan may give a sense of the age of the aerosols in forest fire smoke. However, few furfural emissions are available for biomass combustion. Furfural and sugars were determined in coarse aerosols (>2.4μm aerodynamic diameter) and fine aerosols (<2.4μm aerodynamic diameter) collected in 24 hour periods during different seasons in the United Kingdom and PM10 collected from Thailand and Malaysia including haze episodes. Also total suspended particulate matter (TSP) samples were collected from Taiwan. Furfural and sugars dominated in fine fractions, especially in the UK autumn. Sugars were found at 5.96-18.37 nmol m-3 in fine mode and 1.36-5.75 nmol m-3 in coarse mode aerosols in the UK. Furfural was found at 0.18-0.91 nmol m-3 and 0.05-0.51 nmol m-3 respectively in the same aerosols. Sugars were a dominant contributor to aerosol derived from biomass burning. Sugars and furfural were about 10 and 20 times higher during haze episodes in Malaysia. Laboratory experimental simulation suggested furfural is more rapid destroyed by UV and sunlight than levoglucosan.

KOSMOS: a universal morph server for nucleic acids, proteins and their complexes

PubMed Central

Seo, Sangjae; Kim, Moon Ki

2012-01-01

KOSMOS is the first online morph server to be able to address the structural dynamics of DNA/RNA, proteins and even their complexes, such as ribosomes. The key functions of KOSMOS are the harmonic and anharmonic analyses of macromolecules. In the harmonic analysis, normal mode analysis (NMA) based on an elastic network model (ENM) is performed, yielding vibrational modes and B-factor calculations, which provide insight into the potential biological functions of macromolecules based on their structural features. Anharmonic analysis involving elastic network interpolation (ENI) is used to generate plausible transition pathways between two given conformations by optimizing a topology-oriented cost function that guarantees a smooth transition without steric clashes. The quality of the computed pathways is evaluated based on their various facets, including topology, energy cost and compatibility with the NMA results. There are also two unique features of KOSMOS that distinguish it from other morph servers: (i) the versatility in the coarse-graining methods and (ii) the various connection rules in the ENM. The models enable us to analyze macromolecular dynamics with the maximum degrees of freedom by combining a variety of ENMs from full-atom to coarse-grained, backbone and hybrid models with one connection rule, such as distance-cutoff, number-cutoff or chemical-cutoff. KOSMOS is available at http://bioengineering.skku.ac.kr/kosmos. PMID:22669912

A New Feature-Enhanced Speckle Reduction Method Based on Multiscale Analysis for Ultrasound B-Mode Imaging.

PubMed

Kang, Jinbum; Lee, Jae Young; Yoo, Yangmo

2016-06-01

Effective speckle reduction in ultrasound B-mode imaging is important for enhancing the image quality and improving the accuracy in image analysis and interpretation. In this paper, a new feature-enhanced speckle reduction (FESR) method based on multiscale analysis and feature enhancement filtering is proposed for ultrasound B-mode imaging. In FESR, clinical features (e.g., boundaries and borders of lesions) are selectively emphasized by edge, coherence, and contrast enhancement filtering from fine to coarse scales while simultaneously suppressing speckle development via robust diffusion filtering. In the simulation study, the proposed FESR method showed statistically significant improvements in edge preservation, mean structure similarity, speckle signal-to-noise ratio, and contrast-to-noise ratio (CNR) compared with other speckle reduction methods, e.g., oriented speckle reducing anisotropic diffusion (OSRAD), nonlinear multiscale wavelet diffusion (NMWD), the Laplacian pyramid-based nonlinear diffusion and shock filter (LPNDSF), and the Bayesian nonlocal means filter (OBNLM). Similarly, the FESR method outperformed the OSRAD, NMWD, LPNDSF, and OBNLM methods in terms of CNR, i.e., 10.70 ± 0.06 versus 9.00 ± 0.06, 9.78 ± 0.06, 8.67 ± 0.04, and 9.22 ± 0.06 in the phantom study, respectively. Reconstructed B-mode images that were developed using the five speckle reduction methods were reviewed by three radiologists for evaluation based on each radiologist's diagnostic preferences. All three radiologists showed a significant preference for the abdominal liver images obtained using the FESR methods in terms of conspicuity, margin sharpness, artificiality, and contrast, p<0.0001. For the kidney and thyroid images, the FESR method showed similar improvement over other methods. However, the FESR method did not show statistically significant improvement compared with the OBNLM method in margin sharpness for the kidney and thyroid images. These results demonstrate that the proposed FESR method can improve the image quality of ultrasound B-mode imaging by enhancing the visualization of lesion features while effectively suppressing speckle noise.

Modelling ventricular fibrillation coarseness during cardiopulmonary resuscitation by mixed effects stochastic differential equations.

PubMed

Gundersen, Kenneth; Kvaløy, Jan Terje; Eftestøl, Trygve; Kramer-Johansen, Jo

2015-10-15

For patients undergoing cardiopulmonary resuscitation (CPR) and being in a shockable rhythm, the coarseness of the electrocardiogram (ECG) signal is an indicator of the state of the patient. In the current work, we show how mixed effects stochastic differential equations (SDE) models, commonly used in pharmacokinetic and pharmacodynamic modelling, can be used to model the relationship between CPR quality measurements and ECG coarseness. This is a novel application of mixed effects SDE models to a setting quite different from previous applications of such models and where using such models nicely solves many of the challenges involved in analysing the available data. Copyright © 2015 John Wiley & Sons, Ltd.

vGNM: a better model for understanding the dynamics of proteins in crystals.

PubMed

Song, Guang; Jernigan, Robert L

2007-06-08

The dynamics of proteins are important for understanding their functions. In recent years, the simple coarse-grained Gaussian Network Model (GNM) has been fairly successful in interpreting crystallographic B-factors. However, the model clearly ignores the contribution of the rigid body motions and the effect of crystal packing. The model cannot explain the fact that the same protein may have significantly different B-factors under different crystal packing conditions. In this work, we propose a new GNM, called vGNM, which takes into account both the contribution of the rigid body motions and the effect of crystal packing, by allowing the amplitude of the internal modes to be variables. It hypothesizes that the effect of crystal packing should cause some modes to be amplified and others to become less important. In doing so, vGNM is able to resolve the apparent discrepancy in experimental B-factors among structures of the same protein but with different crystal packing conditions, which GNM cannot explain. With a small number of parameters, vGNM is able to reproduce experimental B-factors for a large set of proteins with significantly better correlations (having a mean value of 0.81 as compared to 0.59 by GNM). The results of applying vGNM also show that the rigid body motions account for nearly 60% of the total fluctuations, in good agreement with previous findings.

Effects of microstructural variation on Charpy impact properties in heavy-section Mn-Mo-Ni low alloy steel for reactor pressure vessel

NASA Astrophysics Data System (ADS)

Hong, Seokmin; Song, Jaemin; Kim, Min-Chul; Choi, Kwon-Jae; Lee, Bong-Sang

2016-03-01

The effects of microstructural changes in heavy-section Mn-Mo-Ni low alloy steel on Charpy impact properties were investigated using a 210 mm thick reactor pressure vessel. Specimens were sampled from 5 different positions at intervals of 1/4 thickness from the inner surface to the outer surface. A detailed microstructural analysis of impact-fractured specimens showed that coarse carbides along the lath boundaries acted as fracture initiation sites, and cleavage cracks deviated at prior-austenite grain boundaries and bainite lath boundaries. Upper shelf energy was higher and energy transition temperature was lower at the surface positon, where fine bainitic microstructure with homogeneously distributed fine carbides were present. Toward the center, coarse upper bainite and precipitation of coarse inter-lath carbides were observed, which deteriorated impact properties. At the 1/4T position, the Charpy impact properties were worse than those at other positions owing to the combination of elongated-coarse inter-lath carbides and large effective grain size.

Fine gravel controls hydrologic and erodibility responses to trampling disturbance for coarse-textured soils with weak cyanobacterial crusts

USGS Publications Warehouse

Herrick, J.E.; Van Zee, J. W.; Belnap, J.; Johansen, J.R.; Remmenga, M.

2010-01-01

We compared short-term effects of lug-soled boot trampling disturbance on water infiltration and soil erodibility on coarse-textured soils covered by a mixture of fine gravel and coarse sand over weak cyanobacterially-dominated biological soil crusts. Trampling significantly reduced final infiltration rate and total infiltration and increased sediment generation from small (0.5m2) rainfall simulation plots (p<0.01). Trampling had no effect on time to runoff or time to peak runoff. Trampling had similar effects at sites with both low and very low levels of cyanobacterial biomass, as indicated by chlorophyll a concentrations. We concluded that trampling effects are relatively independent of differences in the relatively low levels of cyanobacterial biomass in this environment. Instead, trampling appears to reduce infiltration by significantly reducing the cover of gravel and coarse sand on the soil surface, facilitating the development of a physical crust during rainfall events. The results of this study underscore the importance of carefully characterizing both soil physical and biological properties to understand how disturbance affects ecosystem processes. ?? 2010.

Physico-chemical characterization of African urban aerosols (Bamako in Mali and Dakar in Senegal) and their toxic effects in human bronchial epithelial cells: description of a worrying situation.

PubMed

Val, Stéphanie; Liousse, Cathy; Doumbia, El Hadji Thierno; Galy-Lacaux, Corinne; Cachier, Hélène; Marchand, Nicolas; Badel, Anne; Gardrat, Eric; Sylvestre, Alexandre; Baeza-Squiban, Armelle

2013-04-02

The involvement of particulate matter (PM) in cardiorespiratory diseases is now established in developed countries whereas in developing areas such as Africa with a high level of specific pollution, PM pollution and its effects are poorly studied. Our objective was to characterize the biological reactivity of urban African aerosols on human bronchial epithelial cells in relation to PM physico-chemical properties to identify toxic sources. Size-speciated aerosol chemical composition was analyzed in Bamako (BK, Mali, 2 samples with one having desert dust event BK1) and Dakar (DK; Senegal) for Ultrafine UF, Fine F and Coarse C PM. PM reactivity was studied in human bronchial epithelial cells investigating six biomarkers (oxidative stress responsive genes and pro-inflammatory cytokines). PM mass concentrations were mainly distributed in coarse mode (60%) and were impressive in BK1 due to the desert dust event. BK2 and DK samples showed a high content of total carbon characteristic of urban areas. The DK sample had huge PAH quantities in bulk aerosol compared with BK that had more water soluble organic carbon and metals. Whatever the site, UF and F PM triggered the mRNA expression of the different biomarkers whereas coarse PM had little or no effect. The GM-CSF biomarker was the most discriminating and showed the strongest pro-inflammatory effect of BK2 PM. The analysis of gene expression signature and of their correlation with main PM compounds revealed that PM-induced responses are mainly related to organic compounds. The toxicity of African aerosols is carried by the finest PM as with Parisian aerosols, but when considering PM mass concentrations, the African population is more highly exposed to toxic particulate pollution than French population. Regarding the prevailing sources in each site, aerosol biological impacts are higher for incomplete combustion sources resulting from two-wheel vehicles and domestic fires than from diesel vehicles (Dakar). Desert dust events seem to produce fewer biological impacts than anthropogenic sources. Our study shows that combustion sources contribute to the high toxicity of F and UF PM of African urban aerosols, and underlines the importance of emission mitigation and the imperative need to evaluate and to regulate particulate pollution in Africa.

Effect of Dust and Anthropogenic Aerosols on Columnar Aerosol Optical Properties over Darjeeling (2200 m asl), Eastern Himalayas, India

PubMed Central

Chatterjee, Abhijit; Ghosh, Sanjay K.; Adak, Anandamay; Singh, Ajay K.; Devara, Panuganti C. S.; Raha, Sibaji

2012-01-01

Background The loading of atmospheric particulate matter (aerosol) in the eastern Himalaya is mainly regulated by the locally generated anthropogenic aerosols from the biomass burning and by the aerosols transported from the distance sources. These different types of aerosol loading not only affect the aerosol chemistry but also produce consequent signature on the radiative properties of aerosol. Methodology/Principal Findings An extensive study has been made to study the seasonal variations in aerosol components of fine and coarse mode aerosols and black carbon along with the simultaneous measurements of aerosol optical depth on clear sky days over Darjeeling, a high altitude station (2200 masl) at eastern Himalayas during the year 2008. We observed a heavy loading of fine mode dust component (Ca2+) during pre-monsoon (Apr – May) which was higher by 162% than its annual mean whereas during winter (Dec – Feb), the loading of anthropogenic aerosol components mainly from biomass burning (fine mode SO4 2− and black carbon) were higher (76% for black carbon and 96% for fine mode SO4 2−) from their annual means. These high increases in dust aerosols during pre-monsoon and anthropogenic aerosols during winter enhanced the aerosol optical depth by 25 and 40%, respectively. We observed that for every 1% increase in anthropogenic aerosols, AOD increased by 0.55% during winter whereas for every 1% increase in dust aerosols, AOD increased by 0.46% during pre-monsoon. Conclusion/Significance The natural dust transport process (during pre-monsoon) plays as important a role in the radiation effects as the anthropogenic biomass burning (during winter) and their differential effects (rate of increase of the AOD with that of the aerosol concentration) are also very similar. This should be taken into account in proper modeling of the atmospheric environment over eastern Himalayas. PMID:22792264

Estimating the acute health effects of coarse particulate matter accounting for exposure measurement error.

PubMed

Chang, Howard H; Peng, Roger D; Dominici, Francesca

2011-10-01

In air pollution epidemiology, there is a growing interest in estimating the health effects of coarse particulate matter (PM) with aerodynamic diameter between 2.5 and 10 μm. Coarse PM concentrations can exhibit considerable spatial heterogeneity because the particles travel shorter distances and do not remain suspended in the atmosphere for an extended period of time. In this paper, we develop a modeling approach for estimating the short-term effects of air pollution in time series analysis when the ambient concentrations vary spatially within the study region. Specifically, our approach quantifies the error in the exposure variable by characterizing, on any given day, the disagreement in ambient concentrations measured across monitoring stations. This is accomplished by viewing monitor-level measurements as error-prone repeated measurements of the unobserved population average exposure. Inference is carried out in a Bayesian framework to fully account for uncertainty in the estimation of model parameters. Finally, by using different exposure indicators, we investigate the sensitivity of the association between coarse PM and daily hospital admissions based on a recent national multisite time series analysis. Among Medicare enrollees from 59 US counties between the period 1999 and 2005, we find a consistent positive association between coarse PM and same-day admission for cardiovascular diseases.

Modes of occurrence of potentially hazardous elements in coal: levels of confidence

USGS Publications Warehouse

Finkelman, R.B.

1994-01-01

The modes of occurrence of the potentially hazardous elements in coal will be of significance in any attempt to reduce their mobilization due to coal combustion. Antimony and selenium may be present in solid solution in pyrite, as minute accessory sulfides dispersed throughout the organic matrix, or in organic association. Because of these modes of occurrence it is anticipated that less than 50% of these elements will be routinely removed by conventional coal cleaning procedures. Arsenic and mercury occur primarily in late-stage coarse-grained pyrite therefore physical coal cleaning procedures should be successful in removing substantial proportions of these elements. Cadmium occurs in sphalerite and lead in galena. Both of these minerals exhibit a wide range of particle sizes and textural relations. Depending on the particle size and textural relations, physical coal cleaning may remove as little as 25% of these elements or as much as 75%. Manganese in bituminous coal occurs in carbonates, especially siderite. Physical coal cleaning should remove a substantial proportion of this element. More information is needed to elucidate the modes of occurrence of beryllium, chromium, cobalt, and nickel. ?? 1994.

The study of RMB exchange rate complex networks based on fluctuation mode

NASA Astrophysics Data System (ADS)

Yao, Can-Zhong; Lin, Ji-Nan; Zheng, Xu-Zhou; Liu, Xiao-Feng

2015-10-01

In the paper, we research on the characteristics of RMB exchange rate time series fluctuation with methods of symbolization and coarse gaining. First, based on fluctuation features of RMB exchange rate, we define the first type of fluctuation mode as one specific foreign currency against RMB in four days' fluctuating situations, and the second type as four different foreign currencies against RMB in one day's fluctuating situation. With the transforming method, we construct the unique-currency and multi-currency complex networks. Further, through analyzing the topological features including out-degree, betweenness centrality and clustering coefficient of fluctuation-mode complex networks, we find that the out-degree distribution of both types of fluctuation mode basically follows power-law distributions with exponents between 1 and 2. The further analysis reveals that the out-degree and the clustering coefficient generally obey the approximated negative correlation. With this result, we confirm previous observations showing that the RMB exchange rate exhibits a characteristic of long-range memory. Finally, we analyze the most probable transmission route of fluctuation modes, and provide probability prediction matrix. The transmission route for RMB exchange rate fluctuation modes exhibits the characteristics of partially closed loop, repeat and reversibility, which lays a solid foundation for predicting RMB exchange rate fluctuation patterns with large volume of data.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wykes, M., E-mail: mikewykes@gmail.com; Parambil, R.; Gierschner, J.

Here, we present a general approach to treating vibronic coupling in molecular crystals based on atomistic simulations of large clusters. Such clusters comprise model aggregates treated at the quantum chemical level embedded within a realistic environment treated at the molecular mechanics level. As we calculate ground and excited state equilibrium geometries and vibrational modes of model aggregates, our approach is able to capture effects arising from coupling to intermolecular degrees of freedom, absent from existing models relying on geometries and normal modes of single molecules. Using the geometries and vibrational modes of clusters, we are able to simulate the fluorescencemore » spectra of aggregates for which the lowest excited state bears negligible oscillator strength (as is the case, e.g., ideal H-aggregates) by including both Franck-Condon (FC) and Herzberg-Teller (HT) vibronic transitions. The latter terms allow the adiabatic excited state of the cluster to couple with vibrations in a perturbative fashion via derivatives of the transition dipole moment along nuclear coordinates. While vibronic coupling simulations employing FC and HT terms are well established for single-molecules, to our knowledge this is the first time they are applied to molecular aggregates. Here, we apply this approach to the simulation of the low-temperature fluorescence spectrum of para-distyrylbenzene single-crystal H-aggregates and draw comparisons with coarse-grained Frenkel-Holstein approaches previously extensively applied to such systems.« less

Seasonal and inter-annual variability of aerosol optical properties during 2005-2010 over Red Mountain Pass and Impact on the Snow Cover of the San Juan Mountains

NASA Astrophysics Data System (ADS)

Singh, R. P.; Gautam, R.; Painter, T. H.

2011-12-01

Growing body of evidence suggests the significant role of aerosol solar absorption in accelerated seasonal snowmelt in the cryosphere and elevated mountain regions via snow contamination and radiative warming processes. Characterization of aerosol optical properties over seasonal snow cover and snowpacks is therefore important towards the better understanding of aerosol radiative effects and associated impact on snow albedo. In this study, we present seasonal variations in column-integrated aerosol optical properties retrieved from AERONET sunphotometer measurements (2005-2010) at Red Mountain Pass (37.90° N, 107.72° W, 3368 msl) in the San Juan Mountains, in the vicinity of the North American Great Basin and Colorado Plateau deserts. The aerosol optical depth (AOD) measured at 500nm is generally low (< 0.2) in the climatological monthly means but exhibits strong seasonal variability with very low background values of about 0.05 during winter season, but is found to significantly increase more than 5-6 times during summer months with values up to 0.3-0.4. Together with the spectral variations in AOD, the Angstrom Wavelength Exponent (α) typically varies in the range of 1-2 indicating the dominance of fine-mode particulates. However, during summer months, nearly 30% of α values are observed below 0.5 thus suggesting an increased influx of coarse-mode aerosols compared to other seasons. The higher AOD and lower α is most likely a result of the summer-time enhanced convection and upslope pollutant transport. In addition, the possibility of the observed increased coarse-mode influence associated with mineral dust influx cannot be ruled out, due to westerly-airmass driven transport from arid/desert regions as suggested by backward trajectory simulations. A meteorological coupling is also found in the summer season between AOD and column water vapor retrieved from AERONET with co-occurring enhanced water vapor and AOD. Based on column measurements, it is difficult to ascertain the aerosol composition, however, the summer-time enhanced aerosol loading as presented here is consistent with the increased dust deposition in the San Juan mountain snow cover as reported in recent studies. In summary, this study is expected to better understand the seasonal and inter-annual aerosol column variations and is an attempt to provide an insight into the effects of aerosol solar absorption on accelerated seasonal snowmelt in the San Juan mountains.

The stability of the three transmembrane and the four transmembrane human vitamin K epoxide reductase models

NASA Astrophysics Data System (ADS)

Wu, Sangwook

2016-04-01

The three transmembrane and the four transmembrane helix models are suggested for human vitamin K epoxide reductase (VKOR). In this study, we investigate the stability of the human three transmembrane/four transmembrane VKOR models by employing a coarse-grained normal mode analysis and molecular dynamics simulation. Based on the analysis of the mobility of each transmembrane domain, we suggest that the three transmembrane human VKOR model is more stable than the four transmembrane human VKOR model.

Investigation of the seasonal variations of aerosol physicochemical properties and their impact on cloud condensation nuclei number concentration

NASA Astrophysics Data System (ADS)

Logan, Timothy S.

Aerosols are among the most complex yet widely studied components of the atmosphere not only due to the seasonal variability of their physical and chemical properties but also their effects on climate change. The three main aerosol types that are known to affect the physics and chemistry of the atmosphere are: mineral dust, anthropogenic pollution, and biomass burning aerosols. In order to understand how these aerosols affect the atmosphere, this dissertation addresses the following three scientific questions through a combination of surface and satellite observations: SQ1: What are the seasonal and regional variations of aerosol physico-chemical properties at four selected Asian sites? SQ2: How do these aerosol properties change during transpacific and intra-continental long range transport? SQ3: What are the impacts of aerosol properties on marine boundary layer cloud condensation nuclei number concentration? This dissertation uses an innovative approach to classify aerosol properties by region and season to address SQ1. This is useful because this method provides an additional dimension when investigating the physico-chemical properties of aerosols by linking a regional and seasonal dependence to both the aerosol direct and indirect effects. This method involves isolating the aerosol physico-chemical properties into four separate regions using AERONET retrieved Angstrom exponent (AEAOD) and single scattering co-albedo (o oabs) to denote aerosol size and absorptive properties. The aerosols events are then clustered by season. The method is first applied to four AERONET sites representing single mode aerosol dominant regions: weakly absorbing pollution (NASA Goddard), strongly absorbing pollution (Mexico City), mineral dust (Solar Village), and biomass burning smoke (Alta Floresta). The method is then applied to four Asian sites that represent complicated aerosol components. There are strong regional and seasonal influences of the four aerosol types over the selected four Asian sites. A strongly absorbing mineral dust influence is seen at the Xianghe, Taihu, and SACOL sites during the spring months (MAM) as given by coarse mode dominance. There is a shift towards weakly absorbing pollution (sulfate) and biomass (OC) aerosol dominance in the summer (JJA) and autumn (SON) months as given by a strong fine mode influence. A winter season (DJF) shift toward strongly fine mode, absorbing particles (BC and OC) is observed at Xianghe and Taihu. At Mukdahan, a strong fine mode influence is evident year round with weakly and strongly absorbing biomass particles dominant in the autumn and winter months, respectively, while particles exhibit variable absorption during the spring season. To address SQ2, four cases are selected in Asia to investigate how the optical properties of Asian aerosol plumes change during transport across the remote Pacific Ocean. In addition, six strong smoke events are selected to investigate how the physical and chemical properties of biomass smoke aerosols change during transport in North America. From four selected Asian cases, it was shown by DC-8 aircraft in situ measurements that the Asian plumes contained varying amounts of mineral dust and pollution aerosols during transport. In addition, backward trajectory analysis identified two main dust source regions (Gobi and Taklamakan deserts) and urban/industrial pollution regions in central and eastern China. During the anomalously active wildfire season of 2012 in North America, strong smoke events were observed over the Northern Great Plains region by the Grand Forks, North Dakota, AERONET site and selected as cases. The spectral dependences of absorption aerosol optical depth (AAOD) and o oabs illustrated the varying absorption of the smoke plumes due to carbonaceous particle influences. The AAOD parameter was found to be primarily influenced by aerosol particle size while ooabs was more sensitive to the carbonaceous content. The aerosols likely contain strongly absorbing carbonaceous particles generated from the flaming combustion mode. The cases represented complex mixtures of the flaming and smoldering combustion phases. Lastly, SQ3 is addressed by using a multi-platform dataset from the Clouds, Aerosol, and Precipitation in the Marine Boundary Layer (CAP-MBL) Graciosa, Azores, 2009-2010 field campaign. The seasonal aerosol particle volume and number size distributions, AOD, and AEAOD during the CAP-MBL campaign have shown that a low overall mean AOD440 of 0.12 denoted a clean environment over this region that typically contains MBL sea salt. In terms of aerosol volume, a bimodal signal was prominent where the coarse mode influence (r ≥ 1 μm) dominated that of the fine mode (r < 1 μm) throughout the year. However, there are considerable continental fine mode aerosols advected to the Azores region during summer months, including Saharan mineral dust, volcanic ash, biomass smoke, and pollution from North American as identified by HYSPLIT backward trajectories. These aerosol types have been shown to have impacts on MBL cloud condensation nuclei (CCN) that are likely different from coarse mode marine aerosols (e.g., sea salt) (Remillard et al. 2014; Wood et al. 2014). The alternating presence of dominant clean air masses with periodic episodes of polluted air masses will provide a substantial variety in aerosol properties during the summer. This will provide a great opportunity to investigate the interactions between aerosol and cloud properties in terms of the aerosol indirect effect (AIE).

Source apportionment of speciated PM2.5 and non-parametric regressions of PM2.5 and PM(coarse) mass concentrations from Denver and Greeley, Colorado, and construction and evaluation of dichotomous filter samplers

NASA Astrophysics Data System (ADS)

Piedrahita, Ricardo A.

The Denver Aerosol Sources and Health study (DASH) was a long-term study of the relationship between the variability in fine particulate mass and chemical constituents (PM2.5, particulate matter less than 2.5mum) and adverse health effects such as cardio-respiratory illnesses and mortality. Daily filter samples were chemically analyzed for multiple species. We present findings based on 2.8 years of DASH data, from 2003 to 2005. Multilinear Engine 2 (ME-2), a receptor-based source apportionment model was applied to the data to estimate source contributions to PM2.5 mass concentrations. This study relied on two different ME-2 models: (1) a 2-way model that closely reflects PMF-2; and (2) an enhanced model with meteorological data that used additional temporal and meteorological factors. The Coarse Rural Urban Sources and Health study (CRUSH) is a long-term study of the relationship between the variability in coarse particulate mass (PMcoarse, particulate matter between 2.5 and 10mum) and adverse health effects such as cardio-respiratory illnesses, pre-term births, and mortality. Hourly mass concentrations of PMcoarse and fine particulate matter (PM2.5) are measured using tapered element oscillating microbalances (TEOMs) with Filter Dynamics Measurement Systems (FDMS), at two rural and two urban sites. We present findings based on nine months of mass concentration data, including temporal trends, and non-parametric regressions (NPR) results, which were used to characterize the wind speed and wind direction relationships that might point to sources. As part of CRUSH, 1-year coarse and fine mode particulate matter filter sampling network, will allow us to characterize the chemical composition of the particulate matter collected and perform spatial comparisons. This work describes the construction and validation testing of four dichotomous filter samplers for this purpose. The use of dichotomous splitters with an approximate 2.5mum cut point, coupled with a 10mum cut diameter inlet head allows us to collect the separated size fractions that the collocated TEOMs collect continuously. Chemical analysis of the filters will include inorganic ions, organic compounds, EC, OC, and biological analyses. Side by side testing showed the cut diameters were in agreement with each other, and with a well characterized virtual impactor lent to the group by the University of Southern California. Error propagation was performed and uncertainty results were similar to the observed standard deviations.

Aerosol optical properties and types over the tropical urban region of Hyderabad, India

NASA Astrophysics Data System (ADS)

Kharol, Shailesh Kumar; Kaskaoutis, D. G.; Rani Sharma, Anu; Kvs, Badarinath; Kambezidis, H. D.

India is densely populated, industrialized and in the recent years has witnessed an impressive economic development. Aerosols over and around India not only affect the Indian monsoon but also the global climate. The growing population coupled with revolution in industry has resulted in higher demands for energy and transport. With more and more urbanization the usage pattern of fossil and bio-fuels are leading to changes in aerosol properties, which may cause changes in precipitation and can decelerate the hydrological cycle. Over urban areas of India aerosol emissions from fossil fuels such as coal, petrol and diesel oil dominate. Further-more, the Indian subcontinent exhibits different land characteristics ranging from vegetated areas and forests to semiarid and arid environments and tall mountains. India experiences large seasonal climatic variations, which result in extreme temperatures, rainfall and relative humidity. These meteorological and climatic features introduce large variabilities in aerosol op-tical and physico-chemical characteristics at spatial and temporal scales. In the present study, seasonal variations in aerosol properties and types were analysed over tropical urban region of Hyderabad, India during October 2007-September 2008 using MICROTOPS II sun photometer measurements. Higher aerosol optical depth (AOD) values are observed in premonsoon, while the variability of the ˚ngstrüm exponent (α) seems to be more pronounced with higher values A in winter and premonsoon and lower in the monsoon periods. The AOD at 500 nm (AOD500 ) is very large over Hyderabad, varying from 0.46±0.17 in postmonsoon to 0.65±0.22 in premon-soon periods. A discrimination of the different aerosol types over Hyderabad is also attempted using values of AOD500 and α380-870. Such discrimination is rather difficult to interpret since a single aerosol type can partly be identified only under specific conditions (e.g. anthropogenic emissions, biomass burning or dust outbreaks), while the presence of mixed aerosols, without dominance of the coarse or accumulation mode is the usual situation. According to the analysis the three individual components of differing origin, composition and optical characteristics are, a) an urban/industrial aerosol type composed of aerosols produced locally and all year round by combustion activities in the city or long-range transported (mainly in spring) biomass burning, b) an aerosol type of mineral origin raised by the wind in the deserts (mainly in premonsoon) or constitutes coarse-mode aerosols under high relative humidity conditions mainly in the monsoon period, and c) an aerosol type with a marine influence under background conditions occurred in monsoon and postmonsoon periods. Nevertheless, the mixed or undetermined aerosol type dominates with percentages varying from 44.3% (premonsoon) to 72.9% (postmonsoon). Spec-tral AOD and α data are analyzed to obtain information about the adequacy of the simple use of the ˚ngstrüm exponent for characterizing the aerosols. This is achieved by taking advantage A of the spectral variation of lnAOD vs lnλ, the so-called curvature. The results show that the spectral curvature can be effectively used as a tool for aerosol types discrimination, since the fine-mode aerosols exhibit negative curvature, while the coarse-mode particles positive. The present study is among the first over Hyderabad focusing on the seasonal pattern of aerosol properties and types and aiming at associating them with local emissions, regional climatology and long-range transport. Keywords: AOD, aerosol types; sun photometer; back trajectories; Hyderabad; India

Langevin Equation for DNA Dynamics

NASA Astrophysics Data System (ADS)

Grych, David; Copperman, Jeremy; Guenza, Marina

Under physiological conditions, DNA oligomers can contain well-ordered helical regions and also flexible single-stranded regions. We describe the site-specific motion of DNA with a modified Rouse-Zimm Langevin equation formalism that describes DNA as a coarse-grained polymeric chain with global structure and local flexibility. The approach has successfully described the protein dynamics in solution and has been extended to nucleic acids. Our approach provides diffusive mode analytical solutions for the dynamics of global rotational diffusion and internal motion. The internal DNA dynamics present a rich energy landscape that accounts for an interior where hydrogen bonds and base-stacking determine structure and experience limited solvent exposure. We have implemented several models incorporating different coarse-grained sites with anisotropic rotation, energy barrier crossing, and local friction coefficients that include a unique internal viscosity and our models reproduce dynamics predicted by atomistic simulations. The models reproduce bond autocorrelation along the sequence as compared to that directly calculated from atomistic molecular dynamics simulations. The Langevin equation approach captures the essence of DNA dynamics without a cumbersome atomistic representation.

Time Resolved Detectors and Measurements for Accelerators and Beamlines at the Australian Synchrotron

DOE Office of Scientific and Technical Information (OSTI.GOV)

Boland, M. J.; School of Physics, University of Melbourne, Parkville, Victoria 3010; Rassool, R. P.

2010-06-23

Time resolved experiments require precision timing equipment and careful configuration of the machine and the beamline. The Australian Synchrotron has a state of the art timing system that allows flexible, real-time control of the machine and beamline timing parameters to target specific electron bunches. Results from a proof-of-principle measurement with a pulsed laser and a streak camera on the optical diagnostic beamline will be presented. The timing system was also used to fast trigger the PILATUS detector on an x-ray beamline to measure the fill pattern dependent effects of the detector. PILATUS was able to coarsely measure the fill patternmore » in the storage ring which implies that fill pattern intensity variations need to be corrected for when using the detector in this mode.« less

Parametric reduced models for the nonlinear Schrödinger equation

NASA Astrophysics Data System (ADS)

Harlim, John; Li, Xiantao

2015-05-01

Reduced models for the (defocusing) nonlinear Schrödinger equation are developed. In particular, we develop reduced models that only involve the low-frequency modes given noisy observations of these modes. The ansatz of the reduced parametric models are obtained by employing a rational approximation and a colored-noise approximation, respectively, on the memory terms and the random noise of a generalized Langevin equation that is derived from the standard Mori-Zwanzig formalism. The parameters in the resulting reduced models are inferred from noisy observations with a recently developed ensemble Kalman filter-based parametrization method. The forecasting skill across different temperature regimes are verified by comparing the moments up to order four, a two-time correlation function statistics, and marginal densities of the coarse-grained variables.

Parametric reduced models for the nonlinear Schrödinger equation.

PubMed

Harlim, John; Li, Xiantao

2015-05-01

Reduced models for the (defocusing) nonlinear Schrödinger equation are developed. In particular, we develop reduced models that only involve the low-frequency modes given noisy observations of these modes. The ansatz of the reduced parametric models are obtained by employing a rational approximation and a colored-noise approximation, respectively, on the memory terms and the random noise of a generalized Langevin equation that is derived from the standard Mori-Zwanzig formalism. The parameters in the resulting reduced models are inferred from noisy observations with a recently developed ensemble Kalman filter-based parametrization method. The forecasting skill across different temperature regimes are verified by comparing the moments up to order four, a two-time correlation function statistics, and marginal densities of the coarse-grained variables.

Hydrodynamics of Turning Flocks.

PubMed

Yang, Xingbo; Marchetti, M Cristina

2015-12-18

We present a hydrodynamic model of flocking that generalizes the familiar Toner-Tu equations to incorporate turning inertia of well-polarized flocks. The continuum equations controlled by only two dimensionless parameters, orientational inertia and alignment strength, are derived by coarse-graining the inertial spin model recently proposed by Cavagna et al. The interplay between orientational inertia and bend elasticity of the flock yields anisotropic spin waves that mediate the propagation of turning information throughout the flock. The coupling between spin-current density to the local vorticity field through a nonlinear friction gives rise to a hydrodynamic mode with angular-dependent propagation speed at long wavelengths. This mode becomes unstable as a result of the growth of bend and splay deformations augmented by the spin wave, signaling the transition to complex spatiotemporal patterns of continuously turning and swirling flocks.

Single molecule translocation in smectics illustrates the challenge for time-mapping in simulations on multiple scales

NASA Astrophysics Data System (ADS)

Mukherjee, Biswaroop; Peter, Christine; Kremer, Kurt

2017-09-01

Understanding the connections between the characteristic dynamical time scales associated with a coarse-grained (CG) and a detailed representation is central to the applicability of the coarse-graining methods to understand molecular processes. The process of coarse graining leads to an accelerated dynamics, owing to the smoothening of the underlying free-energy landscapes. Often a single time-mapping factor is used to relate the time scales associated with the two representations. We critically examine this idea using a model system ideally suited for this purpose. Single molecular transport properties are studied via molecular dynamics simulations of the CG and atomistic representations of a liquid crystalline, azobenzene containing mesogen, simulated in the smectic and the isotropic phases. The out-of-plane dynamics in the smectic phase occurs via molecular hops from one smectic layer to the next. Hopping can occur via two mechanisms, with and without significant reorientation. The out-of-plane transport can be understood as a superposition of two (one associated with each mode of transport) independent continuous time random walks for which a single time-mapping factor would be rather inadequate. A comparison of the free-energy surfaces, relevant to the out-of-plane transport, qualitatively supports the above observations. Thus, this work underlines the need for building CG models that exhibit both structural and dynamical consistency to the underlying atomistic model.

MEMD-enhanced multivariate fuzzy entropy for the evaluation of complexity in biomedical signals.

PubMed

Azami, Hamed; Smith, Keith; Escudero, Javier

2016-08-01

Multivariate multiscale entropy (mvMSE) has been proposed as a combination of the coarse-graining process and multivariate sample entropy (mvSE) to quantify the irregularity of multivariate signals. However, both the coarse-graining process and mvSE may not be reliable for short signals. Although the coarse-graining process can be replaced with multivariate empirical mode decomposition (MEMD), the relative instability of mvSE for short signals remains a problem. Here, we address this issue by proposing the multivariate fuzzy entropy (mvFE) with a new fuzzy membership function. The results using white Gaussian noise show that the mvFE leads to more reliable and stable results, especially for short signals, in comparison with mvSE. Accordingly, we propose MEMD-enhanced mvFE to quantify the complexity of signals. The characteristics of brain regions influenced by partial epilepsy are investigated by focal and non-focal electroencephalogram (EEG) time series. In this sense, the proposed MEMD-enhanced mvFE and mvSE are employed to discriminate focal EEG signals from non-focal ones. The results demonstrate the MEMD-enhanced mvFE values have a smaller coefficient of variation in comparison with those obtained by the MEMD-enhanced mvSE, even for long signals. The results also show that the MEMD-enhanced mvFE has better performance to quantify focal and non-focal signals compared with multivariate multiscale permutation entropy.

Analysis of the impact of crude oil price fluctuations on China's stock market in different periods-Based on time series network model

NASA Astrophysics Data System (ADS)

An, Yang; Sun, Mei; Gao, Cuixia; Han, Dun; Li, Xiuming

2018-02-01

This paper studies the influence of Brent oil price fluctuations on the stock prices of China's two distinct blocks, namely, the petrochemical block and the electric equipment and new energy block, applying the Shannon entropy of information theory. The co-movement trend of crude oil price and stock prices is divided into different fluctuation patterns with the coarse-graining method. Then, the bivariate time series network model is established for the two blocks stock in five different periods. By joint analysis of the network-oriented metrics, the key modes and underlying evolutionary mechanisms were identified. The results show that the both networks have different fluctuation characteristics in different periods. Their co-movement patterns are clustered in some key modes and conversion intermediaries. The study not only reveals the lag effect of crude oil price fluctuations on the stock in Chinese industry blocks but also verifies the necessity of research on special periods, and suggests that the government should use different energy policies to stabilize market volatility in different periods. A new way is provided to study the unidirectional influence between multiple variables or complex time series.

Ceramic-metal composites prepared via tape casting and melt infiltration methods

NASA Astrophysics Data System (ADS)

Kim, Hyun Jun

Melt infiltration of preforms prepared by tape casting and lamination has been accomplished using a short-time infiltration process that significantly suppresses reaction product formation. For layered materials produced via infiltration of laminated ceramic tapes, of particular interest is the effect that a large change in microstructure has on infiltration, phase formation, and mechanical properties. Hardness of the fine scale composite layers is approximately three times higher than coarse scale layers, due to greater strength of the fine B4C network. Fractography showed that crack propagation occurred by brittle fracture of the carbide and ductile extension of the metal. Despite large differences in hardness, the fracture mode of the fine and coarse scale microstructures appears identical. Fluid flow modeling for tape casting was conducted with a Newtonian slurry under a parallel blade, and the effect of beveling the blade based on a one dimensional flow model is shown. The discussion on slurry deformation after the blade exit suggests that the mode of slurry deformation depends on the relative importance of the pressure gradient and wall shear and that the existence of zero shear plane might have a negative effect on particle alignment in the tape. The analysis of the flow under a beveled blade predicts that this configuration is more advantageous than the parallel blade for productivity and parallel blade is better for producing uniform particle alignment and thinner tape. Also, the one dimensional flow model for the beveled blade is shown to be a valid approximation of the fluid behavior below a blade angle of 45 degrees. The flow visualization study on tape casting was conducted with a transparent apparatus and model slurry. Most investigators have concluded that the shear stress between the doctor blade and moving carrier causes the particle alignment, but, according to the result of visualization experiment, some degree of particle alignment is already established in the reservoir. The fluid flow concept of tape casting is incorporated with a metal infiltration technique to prepare the ceramic-metal composites with tailored porosity and pore orientation. Boron carbide-aluminum system was used to prepare the composites, and its stiffness constants were investigated. The aligned metal ligaments rarely affect the stiffness constant anisotropy which appears to be caused by tape casting operation.

Energy, cost and design aspects of coarse- and fine-bubble aeration systems in the MBBR IFAS process.

PubMed

Sander, S; Behnisch, J; Wagner, M

2017-02-01

With the MBBR IFAS (moving bed biofilm reactor integrated fixed-film activated sludge) process, the biomass required for biological wastewater treatment is either suspended or fixed on free-moving plastic carriers in the reactor. Coarse- or fine-bubble aeration systems are used in the MBBR IFAS process. In this study, the oxygen transfer efficiency (OTE) of a coarse-bubble aeration system was improved significantly by the addition of the investigated carriers, even in-process (∼1% per vol-% of added carrier material). In a fine-bubble aeration system, the carriers had little or no effect on OTE. The effect of carriers on OTE strongly depends on the properties of the aeration system, the volumetric filling rate of the carriers, the properties of the carrier media, and the reactor geometry. This study shows that the effect of carriers on OTE is less pronounced in-process compared to clean water conditions. When designing new carriers in order to improve their effect on OTE further, suppliers should take this into account. Although the energy efficiency and cost effectiveness of coarse-bubble aeration systems can be improved significantly by the addition of carriers, fine-bubble aeration systems remain the more efficient and cost-effective alternative for aeration when applying the investigated MBBR IFAS process.

Local free energies for the coarse-graining of adsorption phenomena: The interacting pair approximation

NASA Astrophysics Data System (ADS)

Pazzona, Federico G.; Pireddu, Giovanni; Gabrieli, Andrea; Pintus, Alberto M.; Demontis, Pierfranco

2018-05-01

We investigate the coarse-graining of host-guest systems under the perspective of the local distribution of pore occupancies, along with the physical meaning and actual computability of the coarse-interaction terms. We show that the widely accepted approach, in which the contributions to the free energy given by the molecules located in two neighboring pores are estimated through Monte Carlo simulations where the two pores are kept separated from the rest of the system, leads to inaccurate results at high sorbate densities. In the coarse-graining strategy that we propose, which is based on the Bethe-Peierls approximation, density-independent interaction terms are instead computed according to local effective potentials that take into account the correlations between the pore pair and its surroundings by means of mean-field correction terms without the need for simulating the pore pair separately. Use of the interaction parameters obtained this way allows the coarse-grained system to reproduce more closely the equilibrium properties of the original one. Results are shown for lattice-gases where the local free energy can be computed exactly and for a system of Lennard-Jones particles under the effect of a static confining field.

Recycled tires as coarse aggregate in concrete pavement mixtures.

DOT National Transportation Integrated Search

2013-07-01

The reuse potential of tire chips as coarse aggregates in pavement concrete was examined in this research by : investigating the effects of low- and high-volume tire chips on fresh and hardened concrete properties. One concrete : control mixture was ...

A Molecular Dynamic Modeling of Hemoglobin-Hemoglobin Interactions

NASA Astrophysics Data System (ADS)

Wu, Tao; Yang, Ye; Sheldon Wang, X.; Cohen, Barry; Ge, Hongya

2010-05-01

In this paper, we present a study of hemoglobin-hemoglobin interaction with model reduction methods. We begin with a simple spring-mass system with given parameters (mass and stiffness). With this known system, we compare the mode superposition method with Singular Value Decomposition (SVD) based Principal Component Analysis (PCA). Through PCA we are able to recover the principal direction of this system, namely the model direction. This model direction will be matched with the eigenvector derived from mode superposition analysis. The same technique will be implemented in a much more complicated hemoglobin-hemoglobin molecule interaction model, in which thousands of atoms in hemoglobin molecules are coupled with tens of thousands of T3 water molecule models. In this model, complex inter-atomic and inter-molecular potentials are replaced by nonlinear springs. We employ the same method to get the most significant modes and their frequencies of this complex dynamical system. More complex physical phenomena can then be further studied by these coarse grained models.

Molecular Modeling of Thermosetting Polymers: Effects of Degree of Curing and Chain Length on Thermo-Mechanical Properties

DTIC Science & Technology

2012-08-01

paper, we will first briefly discuss our recent results, using coarse-grained bead - spring model , on the dependence of failure stress and failure...length of the resin strands. In the coarse-grained model used here the polymer network is treated as a bead - spring system. To create highly cross...simulations of Thermosets We have used a coarse-grained bead - spring model to study the dependence of the mechanical properties of thermosets on chain

Effects of creating two forest structures and using prescribed fire on coarse woody debris in northeastern California, USA

Treesearch

Fabian C. C. Uzoh; Carl N. Skinner

2009-01-01

Little is known about the dynamics of coarse woody debris (CWD) in forests that were originally characterized by frequent, low-moderate intensity fires. We investigated effects of prescribed burning at the Blacks Mountain Experimental Forest in northeastern California following creation of two stand structure conditions: 1) high structural diversity (HiD) that included...

A comparison between elastic network interpolation and MD simulation of 16S ribosomal RNA.

PubMed

Kim, Moon K; Li, Wen; Shapiro, Bruce A; Chirikjian, Gregory S

2003-12-01

In this paper a coarse-grained method called elastic network interpolation (ENI) is used to generate feasible transition pathways between two given conformations of the core central domain of 16S Ribosomal RNA (16S rRNA). The two given conformations are the extremes generated by a molecular dynamics (MD) simulation, which differ from each other by 10A in root-mean-square deviation (RMSD). It takes only several hours to build an ENI pathway on a 1.5GHz Pentium with 512 MB memory, while the MD takes several weeks on high-performance multi-processor servers such as the SGI ORIGIN 2000/2100. It is shown that multiple ENI pathways capture the essential anharmonic motions of millions of timesteps in a particular MD simulation. A coarse-grained normal mode analysis (NMA) is performed on each intermediate ENI conformation, and the lowest 1% of the normal modes (representing about 40 degrees of freedom (DOF)) are used to parameterize fluctuations. This combined ENI/NMA method captures all intermediate conformations in the MD run with 1.5A RMSD on average. In addition, if we restrict attention to the time interval of the MD run between the two extreme conformations, the RMSD between the closest ENI/NMA pathway and the MD results is about 1A. These results may serve as a paradigm for reduced-DOF dynamic simulations of large biological macromolecules as well as a method for the reduced-parameter interpretation of massive amounts of MD data.

A Pure Marine Aerosol Model, for Use in Remote Sensing Applications

NASA Technical Reports Server (NTRS)

Sayer, A. M.; Smirnov, A.; Hsu, N. C.; Holben, B. N.

2011-01-01

Retrievals of aerosol optical depth (AOD) and related parameters from satellite measurements typically involve prescribed models of aerosol size and composition, and are therefore dependent on how well these models are able to represent the radiative behaviour of real aerosols, This study uses aerosol volume size distributions retrieved from Sun-photometer measurements at 11 Aerosol Robotic Network (AERONET) island sites, spread throughout the world's oceans, as a basis to define such a model for unpolluted maritime aerosols. Size distributions are observed to be bimodal and approximately lognormal, although the coarse mode is skewed with a long tail on the low-radius end, The relationship of AOD and size distribution parameters to meteorological conditions is also examined, As wind speed increases, so do coarse-mode volume and radius, The AOD and Angstrom exponent (alpha) show linear relationships with wind speed, although there is considerable scatter in all these relationships, limiting their predictive power. Links between aerosol properties and near-surface relative humidity, columnar water vapor, and sea surface temperature are also explored. A recommended bimodal maritime model, which is able to reconstruct the AERONET AOD with accuracy of order 0.01-0.02, is presented for use in aerosol remote sensing applications. This accuracy holds at most sites and for wavelengths between 340 nm and 1020 nm. Calculated lidar ratios are also provided, and differ significantly from those currently used in Cloud-Aerosol Lidar with Orthogonal Polarization (CALIOP) processing.

Effect of physicochemical factors on transport and retention of graphene oxide in saturated media.

PubMed

Chen, Chong; Shang, Jianying; Zheng, Xiaoli; Zhao, Kang; Yan, Chaorui; Sharma, Prabhakar; Liu, Kesi

2018-05-01

Fate and transport of graphene oxide (GO) have received much attention recently with the increase of GO applications. This study investigated the effect of salt concentration on the transport and retention behavior of GO particles in heterogeneous saturated porous media. Transport experiments were conducted in NaCl solutions with three concentrations (1, 20, and 50 mM) using six structurally packed columns (two homogeneous and four heterogeneous) which were made of fine and coarse grains. The results showed that GO particles had high mobility in all the homogeneous and heterogeneous columns when solution ionic strength (IS) was low. When IS was high, GO particles showed distinct transport ability in six structurally heterogeneous porous media. In homogeneous columns, decreasing ionic strength and increasing grain size increased the mobility of GO. For the column containing coarse-grained channel, the preferential flow path resulted in an early breakthrough of GO, and further larger contact area between coarse and fine grains caused a lower breakthrough peak and a stronger tailing at different IS. In the layered column, there was significant GO retention at coarse-fine grain interface where water flowed from coarse grain to fine grain. Our results indicated that the fate and transport of GO particles in the natural heterogeneous porous media was highly related to the coupled effect of medium structure and salt solution concentration. Copyright © 2018 Elsevier Ltd. All rights reserved.

Comparison of gene expression profiles induced by coarse, fine, and ultrafile particulate matter

EPA Science Inventory

Coarse, fine, and ultrafine particulate matter (PM) fractions possess different physical properties and chemical compositions and may produce different adverse health effects. Studies were undertaken to determine whether or not gene expression patterns may be used to discriminate...

Exploration of scaling effects on coarse resolution land surface phenology

USDA-ARS?s Scientific Manuscript database

A great number of land surface phenoloy (LSP) data have been produced from various coarse resolution satellite datasets and detection algorithms across regional and global scales. Unlike field- measured phenological events which are quantitatively defined with clear biophysical meaning, current LSP ...

Characterization of coarse particulate matter in school gyms

DOE Office of Scientific and Technical Information (OSTI.GOV)

Branis, Martin, E-mail: branis@natur.cuni.cz; Safranek, Jiri

2011-05-15

We investigated the mass concentration, mineral composition and morphology of particles resuspended by children during scheduled physical education in urban, suburban and rural elementary school gyms in Prague (Czech Republic). Cascade impactors were deployed to sample the particulate matter. Two fractions of coarse particulate matter (PM{sub 10-2.5} and PM{sub 2.5-1.0}) were characterized by gravimetry, energy dispersive X-ray spectrometry and scanning electron microscopy. Two indicators of human activity, the number of exercising children and the number of physical education hours, were also recorded. Lower mass concentrations of coarse particulate matter were recorded outdoors (average PM{sub 10-2.5} 4.1-7.4 {mu}g m{sup -3} andmore » PM{sub 2.5-1.0} 2.0-3.3 {mu}g m{sup -3}) than indoors (average PM{sub 10-2.5} 13.6-26.7 {mu}g m{sup -3} and PM{sub 2.5-1.0} 3.7-7.4 {mu}g m{sup -3}). The indoor concentrations of coarse aerosol were elevated during days with scheduled physical education with an average indoor-outdoor (I/O) ratio of 2.5-16.3 for the PM{sub 10-2.5} and 1.4-4.8 for the PM{sub 2.5-1.0} values. Under extreme conditions, the I/O ratios reached 180 (PM{sub 10-2.5}) and 19.1 (PM{sub 2.5-1.0}). The multiple regression analysis based on the number of students and outdoor coarse PM as independent variables showed that the main predictor of the indoor coarse PM concentrations is the number of students in the gym. The effect of outdoor coarse PM was weak and inconsistent. The regression models for the three schools explained 60-70% of the particular dataset variability. X-ray spectrometry revealed 6 main groups of minerals contributing to resuspended indoor dust. The most abundant particles were those of crustal origin composed of Si, Al, O and Ca. Scanning electron microscopy showed that, in addition to numerous inorganic particles, various types of fibers and particularly skin scales make up the main part of the resuspended dust in the gyms. In conclusion, school gyms were found to be indoor microenvironments with high concentrations of coarse particulate matter, which can contribute to increased short-term inhalation exposure of exercising children. - Highlights: {yields} We studied concentration, composition and morphology of coarse particles in gyms. {yields} Indoor concentration of coarse particles was high during days with pupils activity. {yields} Effect of outdoor coarse dust on indoor levels was weak and inconsistent. {yields} Six main groups of minerals contributing to indoor resuspended dust were determined. {yields} The most abundant coarse particles were human skin scales.« less

Aplication of LIRIC algorithm to study aerosol transport over Belsk, Poland

NASA Astrophysics Data System (ADS)

Pietruczuk, Aleksander; Posyniak, Michał

2015-04-01

In this work synergy of measurements done by of a LIDAR and a sun-sky scanning photometer is presented. The LIdar-Radiometer Inversion Code (LIRIC) was applied to study periodic events of increased values of the aerosol optical depth (AOD) observed at Belsk (Poland). Belsk is a background site located in a rural area around 50 km south from Warsaw. Events of increased AOD occur mainly during spring and they coincide with events of elevated concentrations of particulate matter (PM10). This phenomenon is observed in all eastern Europe, e.g. in Minsk, and is caused by long range aerosol transport. Our previous work showed aerosol transport from the border between Belarus, Ukraine and Russia in the planetary boundary layer (PBL), and from north Africa in the free troposphere. The LIRIC algorithm, which uses optical and microphysical properties of the aerosol derived from photometric measurements and LIDAR profiles, was applied to study vertical distribution of fine and coarse modes of aerosol. The analysis of the airmass backward trajectories and models results (DREAM and NAAPS)was also used to determine a possible aerosol type and its source region. This study proved our previous findings. Most of events with increased AODs are observed during spring. In this season the fine mode aerosol is mainly present in the PBL. On the basis of the trajectory analysis and the NAAPS results we presume that it is the absorbing aerosol originating from the regions of seasonal biomass burning in eastern Europe, i.e. the area mentioned above. The events with increased AODs were also found during summer. In this case the fine mode aerosol is transported in the PBL a like to spring season. However, our analysis of trajectories and model results indicated western Europe as a source region. It is probably urban/industrial aerosol. The coarse mode aerosol is transported mainly in the free troposphere as separate layers. The analysis of backward trajectories indicates northern Africa as a possible source region regardless the season. DREAM and NAAPS results suggest presence of mineral dust in this case over Belsk.

Orthographic and phonological contributions to reading development: tracking developmental trajectories using masked priming.

PubMed

Ziegler, Johannes C; Bertrand, Daisy; Lété, Bernard; Grainger, Jonathan

2014-04-01

The present study used a variant of masked priming to track the development of 2 marker effects of orthographic and phonological processing from Grade 1 through Grade 5 in a cross-sectional study. Pseudohomophone (PsH) priming served as a marker for phonological processing, whereas transposed-letter (TL) priming was a marker for coarse-grained orthographic processing. The results revealed a clear developmental picture. First, the PsH priming effect was significant and remained stable across development, suggesting that phonology not only plays an important role in early reading development but continues to exert a robust influence throughout reading development. This finding challenges the view that more advanced readers should rely less on phonological information than younger readers. Second, the TL priming effect increased monotonically with grade level and reading age, which suggests greater reliance on coarse-grained orthographic coding as children become better readers. Thus, TL priming effects seem to be a good marker effect for children's ability to use coarse-grained orthographic coding to speed up direct lexical access in alphabetic languages. The results were predicted by the dual-route model of orthographic processing, which suggests that direct orthographic access is achieved through coarse-grained orthographic coding that tolerates some degree of flexibility in letter order. PsycINFO Database Record (c) 2014 APA, all rights reserved.

On long-time instabilities in staggered finite difference simulations of the seismic acoustic wave equations on discontinuous grids

NASA Astrophysics Data System (ADS)

Gao, Longfei; Ketcheson, David; Keyes, David

2018-02-01

We consider the long-time instability issue associated with finite difference simulation of seismic acoustic wave equations on discontinuous grids. This issue is exhibited by a prototype algebraic problem abstracted from practical application settings. Analysis of this algebraic problem leads to better understanding of the cause of the instability and provides guidance for its treatment. Specifically, we use the concept of discrete energy to derive the proper solution transfer operators and design an effective way to damp the unstable solution modes. Our investigation shows that the interpolation operators need to be matched with their companion restriction operators in order to properly couple the coarse and fine grids. Moreover, to provide effective damping, specially designed diffusive terms are introduced to the equations at designated locations and discretized with specially designed schemes. These techniques are applied to simulations in practical settings and are shown to lead to superior results in terms of both stability and accuracy.

Transport and radiative impacts of atmospheric pollen using online, observation-based emissions

NASA Astrophysics Data System (ADS)

Wozniak, M. C.; Steiner, A. L.; Solmon, F.; Li, Y.

2015-12-01

Atmospheric pollen emitted from trees and grasses exhibits both a high temporal variability and a highly localized spatial distribution that has been difficult to quantify in the atmosphere. Pollen's radiative impact is also not quantified because it is neglected in climate modeling studies. Here we couple an online, meteorological active pollen emissions model guided by observations of airborne pollen to understand the role of pollen in the atmosphere. We use existing pollen counts from 2003-2008 across the continental U.S. in conjunction with a tree database and historical meteorological data to create an observation-based phenological model that produces accurately scaled and timed emissions. These emissions are emitted and transported within the regional climate model (RegCM4) and the direct radiative effect is calculated. Additionally, we simulate the rupture of coarse pollen grains into finer particles by adding a second size mode for pollen emissions, which contributes to the shortwave radiative forcing and also has an indirect effect on climate.

Effects of elasticity and geometry on the locomotion of a model bacterium

NASA Astrophysics Data System (ADS)

Nguyen, Frank; Graham, Michael

2017-11-01

The locomotion of flagellated bacteria in viscous fluid provides the blueprint for a number of micro-scale engineering applications. The elasticities of both the hook protein (connecting cell body and flagellum) and the flagella themselves play a key role in determining the stability of locomotion. We use a coarse-grained discretization of elastic flagella connected to a rigid cell body to examine trajectories and flow fields for free swimmers. We indeed find that hook and/or flagellar buckling occurs above a critical flexibility relative to the swimmer's torque input. This renders straight swimming ineffective, though not necessarily undesirable in practice. Simulations with multiple flagella show bundling may partially stabilize the buckling effect. For a single flagellum or single bundle, we define a parameter space of characteristic angles tracking the overall time-averaged shape of the swimmer while also delineating stability boundaries between different modes of buckling. Ultimately our results may provide insight on how swimmers move through complex environments and how to design microrobotic swimmers for specific applications. NHS, GERS.

Eliminating fast reactions in stochastic simulations of biochemical networks: A bistable genetic switch

NASA Astrophysics Data System (ADS)

Morelli, Marco J.; Allen, Rosalind J.; Tǎnase-Nicola, Sorin; ten Wolde, Pieter Rein

2008-01-01

In many stochastic simulations of biochemical reaction networks, it is desirable to "coarse grain" the reaction set, removing fast reactions while retaining the correct system dynamics. Various coarse-graining methods have been proposed, but it remains unclear which methods are reliable and which reactions can safely be eliminated. We address these issues for a model gene regulatory network that is particularly sensitive to dynamical fluctuations: a bistable genetic switch. We remove protein-DNA and/or protein-protein association-dissociation reactions from the reaction set using various coarse-graining strategies. We determine the effects on the steady-state probability distribution function and on the rate of fluctuation-driven switch flipping transitions. We find that protein-protein interactions may be safely eliminated from the reaction set, but protein-DNA interactions may not. We also find that it is important to use the chemical master equation rather than macroscopic rate equations to compute effective propensity functions for the coarse-grained reactions.

Semantic processing in native and second language: evidence from hemispheric differences in fine and coarse semantic coding.

PubMed

Faust, Miriam; Ben-Artzi, Elisheva; Vardi, Nili

2012-12-01

Previous studies suggest that whereas the left hemisphere (LH) is involved in fine semantic processing, the right hemisphere (RH) is uniquely engaged in coarse semantic coding including the comprehension of distinct types of language such as figurative language, lexical ambiguity and verbal humor (e.g., Chiarello, 2003; Faust, 2012). The present study examined the patterns of hemispheric involvement in fine/coarse semantic processing in native and non-native languages using a split visual field priming paradigm. Thirty native Hebrew speaking students made lexical decision judgments of Hebrew and English target words preceded by strongly, weakly, or unrelated primes. Results indicated that whereas for Hebrew pairs, priming effect for the weakly-related word pairs was obtained only for RH presented target words, for English pairs, no priming effect for the weakly-related pairs emerged for either LH or RH presented targets, suggesting that coarse semantic coding is much weaker for a non-native than native language. Copyright © 2012 Elsevier Inc. All rights reserved.

Gyration-radius dynamics in structural transitions of atomic clusters.

PubMed

Yanao, Tomohiro; Koon, Wang S; Marsden, Jerrold E; Kevrekidis, Ioannis G

2007-03-28

This paper is concerned with the structural transition dynamics of the six-atom Morse cluster with zero total angular momentum, which serves as an illustrative example of the general reaction dynamics of isolated polyatomic molecules. It develops a methodology that highlights the interplay between the effects of the potential energy topography and those of the intrinsic geometry of the molecular internal space. The method focuses on the dynamics of three coarse variables, the molecular gyration radii. By using the framework of geometric mechanics and hyperspherical coordinates, the internal motions of a molecule are described in terms of these three gyration radii and hyperangular modes. The gyration radii serve as slow collective variables, while the remaining hyperangular modes serve as rapidly oscillating "bath" modes. Internal equations of motion reveal that the gyration radii are subject to two different kinds of forces: One is the ordinary force that originates from the potential energy function of the system, while the other is an internal centrifugal force. The latter originates from the dynamical coupling of the gyration radii with the hyperangular modes. The effects of these two forces often counteract each other: The potential force generally works to keep the internal mass distribution of the system compact and symmetric, while the internal centrifugal force works to inflate and elongate it. Averaged fields of these two forces are calculated numerically along a reaction path for the structural transition of the molecule in the three-dimensional space of gyration radii. By integrating the sum of these two force fields along the reaction path, an effective energy curve is deduced, which quantifies the gross work necessary for the system to change its mass distribution along the reaction path. This effective energy curve elucidates the energy-dependent switching of the structural preference between symmetric and asymmetric conformations. The present methodology should be of wide use for the systematic reduction of dimensionality as well as for the identification of kinematic barriers associated with the rearrangement of mass distribution in a variety of molecular reaction dynamics in vacuum.

Gyration-radius dynamics in structural transitions of atomic clusters

NASA Astrophysics Data System (ADS)

Yanao, Tomohiro; Koon, Wang S.; Marsden, Jerrold E.; Kevrekidis, Ioannis G.

2007-03-01

This paper is concerned with the structural transition dynamics of the six-atom Morse cluster with zero total angular momentum, which serves as an illustrative example of the general reaction dynamics of isolated polyatomic molecules. It develops a methodology that highlights the interplay between the effects of the potential energy topography and those of the intrinsic geometry of the molecular internal space. The method focuses on the dynamics of three coarse variables, the molecular gyration radii. By using the framework of geometric mechanics and hyperspherical coordinates, the internal motions of a molecule are described in terms of these three gyration radii and hyperangular modes. The gyration radii serve as slow collective variables, while the remaining hyperangular modes serve as rapidly oscillating "bath" modes. Internal equations of motion reveal that the gyration radii are subject to two different kinds of forces: One is the ordinary force that originates from the potential energy function of the system, while the other is an internal centrifugal force. The latter originates from the dynamical coupling of the gyration radii with the hyperangular modes. The effects of these two forces often counteract each other: The potential force generally works to keep the internal mass distribution of the system compact and symmetric, while the internal centrifugal force works to inflate and elongate it. Averaged fields of these two forces are calculated numerically along a reaction path for the structural transition of the molecule in the three-dimensional space of gyration radii. By integrating the sum of these two force fields along the reaction path, an effective energy curve is deduced, which quantifies the gross work necessary for the system to change its mass distribution along the reaction path. This effective energy curve elucidates the energy-dependent switching of the structural preference between symmetric and asymmetric conformations. The present methodology should be of wide use for the systematic reduction of dimensionality as well as for the identification of kinematic barriers associated with the rearrangement of mass distribution in a variety of molecular reaction dynamics in vacuum.

Coarse woody debris and pine litter manipulation effects on movement and microhabitat use of Ambystoma talpoideum in a Pinus taeda stand

Treesearch

Kurtis R. Moseley; Steven B. Castleberry; W. Mark Ford

2004-01-01

We examined effects of coarse woody debris (CWD) and pine litter (PL) manipulations on movement and microhabitat use by mole salamanders (Ambystoma talpoideum) in the upper Coastal Plain of South Carolina. Individuals were tracked within field enclosures using harmonic radar detection from 3 December 2002 to 1 August 2003. Enclosure study one (ESI)...

Comparison of Aerosol Classification Results from Airborne High Spectral Resolution Lidar (HSRL) Measurements and the Calipso Vertical Feature Mask

NASA Technical Reports Server (NTRS)

Burton, S. P.; Ferrare, R. A.; Hostetler, C. A.; Hair, J. W.; Rogers, R. R.; Obland, M. D.; Butler, C. F.; Cook, A. L.; Harper, D. B.; Froyd, K. D.;

Applications of the JPEG standard in a medical environment

NASA Astrophysics Data System (ADS)

Wittenberg, Ulrich

1993-10-01

JPEG is a very versatile image coding and compression standard for single images. Medical images make a higher demand on image quality and precision than the usual 'pretty pictures'. In this paper the potential applications of the various JPEG coding modes in a medical environment are evaluated. Due to legal reasons the lossless modes are especially interesting. The spatial modes are equally important because medical data may well exceed the maximum of 12 bit precision allowed for the DCT modes. The performance of the spatial predictors is investigated. From the users point of view the progressive modes, which provide a fast but coarse approximation of the final image, reduce the subjective time one has to wait for it, so they also reduce the user's frustration. Even the lossy modes will find some applications, but they have to be handled with care, because repeated lossy coding and decoding leads to a degradation of the image quality. The amount of this degradation is investigated. The JPEG standard alone is not sufficient for a PACS because it does not store enough additional data such as creation data or details of the imaging modality. Therefore it will be an imbedded coding format in standards like TIFF or ACR/NEMA. It is concluded that the JPEG standard is versatile enough to match the requirements of the medical community.

Virtual interface substructure synthesis method for normal mode analysis of super-large molecular complexes at atomic resolution.

PubMed

Chen, Xuehui; Sun, Yunxiang; An, Xiongbo; Ming, Dengming

2011-10-14

Normal mode analysis of large biomolecular complexes at atomic resolution remains challenging in computational structure biology due to the requirement of large amount of memory space and central processing unit time. In this paper, we present a method called virtual interface substructure synthesis method or VISSM to calculate approximate normal modes of large biomolecular complexes at atomic resolution. VISSM introduces the subunit interfaces as independent substructures that join contacting molecules so as to keep the integrity of the system. Compared with other approximate methods, VISSM delivers atomic modes with no need of a coarse-graining-then-projection procedure. The method was examined for 54 protein-complexes with the conventional all-atom normal mode analysis using CHARMM simulation program and the overlap of the first 100 low-frequency modes is greater than 0.7 for 49 complexes, indicating its accuracy and reliability. We then applied VISSM to the satellite panicum mosaic virus (SPMV, 78,300 atoms) and to F-actin filament structures of up to 39-mer, 228,813 atoms and found that VISSM calculations capture functionally important conformational changes accessible to these structures at atomic resolution. Our results support the idea that the dynamics of a large biomolecular complex might be understood based on the motions of its component subunits and the way in which subunits bind one another. © 2011 American Institute of Physics

Vertical profiles of fine and coarse aerosol particles over Cyprus: Comparison between in-situ drone measurements and remote sensing observations

NASA Astrophysics Data System (ADS)

Mamali, Dimitra; Marinou, Eleni; Pikridas, Michael; Kottas, Michael; Binietoglou, Ioannis; Kokkalis, Panagiotis; Tsekeri, Aleksandra; Amiridis, Vasilis; Sciare, Jean; Keleshis, Christos; Engelmann, Ronny; Ansmann, Albert; Russchenberg, Herman W. J.; Biskos, George

2017-04-01

Vertical profiles of the aerosol mass concentration derived from light detection and ranging (lidar) measurements were compared to airborne dried optical particle counter (OPC MetOne; Model 212) measurements during the INUIT-BACCHUS-ACTRIS campaign. The campaign took place in April 2016 and its main focus was the study of aerosol dust particles. During the campaign the NOA Polly-XT Raman lidar located at Nicosia (35.08° N, 33.22° E) was providing round-the-clock vertical profiles of aerosol optical properties. In addition, an unmanned aerial vehicle (UAV) carrying an OPC flew on 7 days during the first morning hours. The flights were performed at Orounda (35.1018° N, 33.0944° E) reaching altitudes of 2.5 km a.s.l, which allows comparison with a good fraction of the recorded lidar data. The polarization lidar photometer networking method (POLIPHON) was used for the estimation of the fine (non-dust) and coarse (dust) mode aerosol mass concentration profiles. This method uses as input the particle backscatter coefficient and the particle depolarization profiles of the lidar at 532 nm wavelength and derives the aerosol mass concentration. The first step in this approach makes use of the lidar observations to separate the backscatter and extinction contributions of the weakly depolarizing non-dust aerosol components from the contributions of the strongly depolarizing dust particles, under the assumption of an externally mixed two-component aerosol. In the second step, sun photometer retrievals of the fine and the coarse modes aerosol optical thickness (AOT) and volume concentration are used to calculate the associated concentrations from the extinction coefficients retrieved from the lidar. The estimated aerosol volume concentrations were converted into mass concentration with an assumption for the bulk aerosol density, and compared with the OPC measurements. The first results show agreement within the experimental uncertainty. This project received funding from the European Union's Seventh Framework Programme (FP7) project BACCHUS under grant agreement no. 603445, and the European Union's Horizon 2020 research and innovation programme ACTRIS-2 under grant agreement No 654109.

Aerosol and precipitation chemistry measurements in a remote site in Central Amazonia: the role of biogenic contribution

NASA Astrophysics Data System (ADS)

Pauliquevis, T.; Lara, L. L.; Antunes, M. L.; Artaxo, P.

2012-06-01

In this analysis a 3.5 years data set of aerosol and precipitation chemistry, obtained in a remote site in Central Amazonia (Balbina, (1°55' S, 59°29' W, 174 m a.s.l.), about 200 km north of Manaus) is discussed. Aerosols were sampled using stacked filter units (SFU), which separate fine (d < 2.5 μm) and coarse mode (2.5 μm < d < 10.0 μm) aerosol particles. Filters were analyzed for particulate mass (PM), Equivalent Black Carbon (BCE) and elemental composition by Particle Induced X-Ray Emission (PIXE). Rainwater samples were collected using a wet-only sampler and samples were analyzed for pH and ionic composition, which was determined using ionic chromatography (IC). Natural sources dominated the aerosol mass during the wet season, when it was predominantly of natural biogenic origin mostly in the coarse mode, which comprised up to 81% of PM10. Biogenic aerosol from both primary emissions and secondary organic aerosol dominates the fine mode in the wet season, with very low concentrations (average 2.2 μg m-3). Soil dust was responsible for a minor fraction of the aerosol mass (less than 17%). Sudden increases in the concentration of elements as Al, Ti and Fe were also observed, both in fine and coarse mode (mostly during the April-may months), which we attribute to episodes of Saharan dust transport. During the dry periods, a significant contribution to the fine aerosols loading was observed, due to the large-scale transport of smoke from biomass burning in other portions of the Amazon basin. This contribution is associated with the enhancement of the concentration of S, K, Zn and BCE. Chlorine, which is commonly associated to sea salt and also to biomass burning emissions, presented higher concentration not only during the dry season but also for the April-June months, due to the establishment of more favorable meteorological conditions to the transport of Atlantic air masses to Central Amazonia. The chemical composition of rainwater was similar to those ones observed in other remote sites in tropical forests. The volume-weighted mean (VWM) pH was 4.90. The most important contribution to acidity was from weak organic acids. The organic acidity was predominantly associated with the presence of acetic acid instead of formic acid, which is more often observed in pristine tropical areas. Wet deposition rates for major species did not differ significantly between dry and wet season, except for NH4+, citrate and acetate, which had smaller deposition rates during dry season. While biomass burning emissions were clearly identified in the aerosol component, it did not present a clear signature in rainwater. The biogenic component and the long-range transport of sea salt were observed both in aerosols and rainwater composition. The results shown here indicate that in Central Amazonia it is still possible to observe quite pristine atmospheric conditions, relatively free of anthropogenic influences.

Development of Advanced Seed Laser Modules for Lidar and Spectroscopy Applications

NASA Technical Reports Server (NTRS)

Prasad, Narasimha S.; Rosiewicz, Alex; Coleman, Steven M.

2013-01-01

We report on recent progress made in the development of highly compact, single mode, distributed feedback laser (DFB) seed laser modules for lidar and spectroscopy applications from space based platforms. One of the intended application of this technology is in the NASA's Active Sensing of CO2 Emissions over Nights, Days, and Seasons (ASCENDS) mission. The DFB laser modules operating at 1571 nm and 1262 nm have advanced current and temperature drivers built into them. A combination of temperature and current tuning allows coarse and fine adjustment of the diode wavelengths.

Analysis of wind-driven ambient noise in a shallow water environment with a sandy seabed.

PubMed

Knobles, D P; Joshi, S M; Gaul, R D; Graber, H C; Williams, N J

2008-09-01

On the New Jersey continental shelf ambient sound levels were recorded during tropical storm Ernesto that produced wind speeds up to 40 knots in early September 2006. The seabed at the position of the acoustic measurements can be approximately described as coarse sand. Differences between the ambient noise levels for the New Jersey shelf measurements and deep water reference measurements are modeled using both normal mode and ray methods. The analysis is consistent with a nonlinear frequency dependent seabed attenuation for the New Jersey site.

Compact variable-temperature scanning force microscope.

PubMed

Chuang, Tien-Ming; de Lozanne, Alex

2007-05-01

A compact design for a cryogenic variable-temperature scanning force microscope using a fiber-optic interferometer to measure cantilever deflection is presented. The tip-sample coarse approach and the lateral tip positioning are performed by piezoelectric positioners in situ. The microscope has been operated at temperatures between 6 and 300 K. It is designed to fit into an 8 T superconducting magnet with the field applied in the out-of-plane direction. The results of scanning in various modes are demonstrated, showing contrast based on magnetic field gradients or surface potentials.

A facetless regrowth-free single mode laser based on MMI couplers

NASA Astrophysics Data System (ADS)

Caro, Ludovic; Kelly, Niall P.; Dernaika, Mohamad; Shayesteh, Maryam; Morrissey, Padraic E.; Alexander, Justin K.; Peters, Frank H.

2017-09-01

This paper presents a facetless, tunable laser operating near 1575 nm, as well as a theoretical model predicting spectral features of the laser. The lasers were fabricated without regrowth or advanced lithography techniques, and are based on MMI couplers and etched facets. Coarse vernier tuning was achieved over a range of 25 nm, while fine, thermal tuning was also demonstrated over a range of 1.5 nm. SMSR values of 25 dB and higher were observed, with a measured laser linewidth of 600 kHz.

A new bead-spring model for simulation of semi-flexible macromolecules

NASA Astrophysics Data System (ADS)

Saadat, Amir; Khomami, Bamin

2016-11-01

A bead-spring model for semi-flexible macromolecules is developed to overcome the deficiencies of the current coarse-grained bead-spring models. Specifically, model improvements are achieved through incorporation of a bending potential. The new model is designed to accurately describe the correlation along the backbone of the chain, segmental length, and force-extension behavior of the macromolecule even at the limit of 1 Kuhn step per spring. The relaxation time of different Rouse modes is used to demonstrate the capabilities of the new model in predicting chain dynamics.

Residential indoor and outdoor coarse particles and associated endotoxin exposures

NASA Astrophysics Data System (ADS)

Wheeler, Amanda J.; Dobbin, Nina A.; Lyrette, Ninon; Wallace, Lance; Foto, Mark; Mallick, Ranjeeta; Kearney, Jill; Van Ryswyk, Keith; Gilbert, Nicolas L.; Harrison, Ian; Rispler, Kathleen; Héroux, Marie-Eve

2011-12-01

There is a growing body of evidence demonstrating that coarse particles (PM 10-2.5) have detrimental impacts upon health, especially for respiratory effects. There are limited data available for indoor residential exposures. Some data exist regarding the composition of this PM size fraction with emphasis on crustal elements and biological components. This study includes data from 146 homes sampled in Regina, Saskatchewan (SK) where 5-day integrated concurrent monitoring of indoor and outdoor coarse particles was conducted during the winter and summer of 2007. The coarse particle filters were subsequently analysed for endotoxin content to determine the contribution of this compound. Winter indoor geometric mean concentrations of coarse particles exceeded outdoor concentrations (3.73 μg m -3 vs 2.49 μg m -3; paired t-test p < 0.0001); however the reverse was found in summer (4.34 μg m -3 vs 8.82 μg m -3; paired t-test p < 0.0001). Linear regression indicated that winter predictors of indoor coarse particles were outdoor coarse particles, ventilation and presence of at least two or more occupants. During the summer, increased use of central air conditioning was associated with reduced coarse particles, while smoking and the presence of two or more occupants resulted in increased coarse particles. Endotoxin concentrations (EU μg -1) were lower indoors than outdoors in both seasons. Spatial variability of ambient coarse particles was assessed to determine the suitability of using a single monitoring station within a city to estimate exposure. The coefficients of variation between homes sampled simultaneously and the central monitoring station were calculated (median COV in summer = 15% and winter = 24%) and showed significant variability by week, especially during the summer months, suggesting a single site may be insufficient for characterizing exposure. Future studies should consider daily measurements per home to understand shorter term exposures and day to day variability of these pollutants.

Background aerosol over the Himalayas and Tibetan Plateau: observed characteristics of aerosol mass loading

NASA Astrophysics Data System (ADS)

Liu, B.; Cong, Z.; Wang, Y.; Xin, J.; Wan, X.; Pan, Y.; Liu, Z.; Wang, Y.; Zhang, G.; Kang, S.

2016-12-01

To investigate the atmospheric aerosols of the Himalayas and Tibetan Plateau (HTP), an observation network was established within the region's various ecosystems, including at Ngari, Qomolangma (QOMS), Nam Co, and SouthEastern Tibetan (SET) stations. In this paper we illustrate aerosol mass loadings by integrating in situ measurements with satellite and ground-based remote sensing datasets for the 2011-2013 period, on both local and large scales. Mass concentrations of these surface atmospheric aerosols were relatively low and varied with land cover, showing a general tendency of Ngari and QOMS (barren sites) > Nam Co (grassland site) > SET (forest site). Bimodal mass distributions of size-segregated particles were found at all sites, with a relatively small peak in accumulation mode and a more notable peak in coarse mode. Diurnal variations in fine aerosol masses generally displayed a bi-peak pattern at the QOMS, Nam Co and SET stations and a single-peak pattern at the Ngari station, controlled by the effects of local geomorphology, mountain-valley breeze circulation and aerosol emissions. Combining surface aerosols data and atmospheric-column aerosol optical properties, the TSP mass and aerosol optical depth (AOD) of the Multi-angle Imaging Spectroradiometer (MISR) generally decreased as land cover changed from barren to forest, in inverse relation to the PM2.5 ratios. The seasonality of aerosol mass parameters was land-cover dependent. Over forest and grassland areas, TSP mass, PM2.5 mass, MISR-AOD and fine-mode AOD were higher in spring and summer, followed by relatively lower values in autumn and winter. At the barren site (the QOMS station), there were inconsistent seasonal variations between surface TSP mass (PM2.5 mass) and atmospheric column AOD (fine-mode AOD). Our findings implicate that, HTP aerosol masses (especially their reginal characteristics and fine particle emissions) need to be treated sensitively in relation to assessments of their climatic effect

Brownian dynamics simulations of lipid bilayer membrane with hydrodynamic interactions in LAMMPS

NASA Astrophysics Data System (ADS)

Fu, Szu-Pei; Young, Yuan-Nan; Peng, Zhangli; Yuan, Hongyan

2016-11-01

Lipid bilayer membranes have been extensively studied by coarse-grained molecular dynamics simulations. Numerical efficiencies have been reported in the cases of aggressive coarse-graining, where several lipids are coarse-grained into a particle of size 4 6 nm so that there is only one particle in the thickness direction. Yuan et al. proposed a pair-potential between these one-particle-thick coarse-grained lipid particles to capture the mechanical properties of a lipid bilayer membrane (such as gel-fluid-gas phase transitions of lipids, diffusion, and bending rigidity). In this work we implement such interaction potential in LAMMPS to simulate large-scale lipid systems such as vesicles and red blood cells (RBCs). We also consider the effect of cytoskeleton on the lipid membrane dynamics as a model for red blood cell (RBC) dynamics, and incorporate coarse-grained water molecules to account for hydrodynamic interactions. The interaction between the coarse-grained water molecules (explicit solvent molecules) is modeled as a Lennard-Jones (L-J) potential. We focus on two sets of LAMMPS simulations: 1. Vesicle shape transitions with varying enclosed volume; 2. RBC shape transitions with different enclosed volume. This work is funded by NSF under Grant DMS-1222550.

Brownian dynamics simulations of lipid bilayer membrane with hydrodynamic interactions in LAMMPS

NASA Astrophysics Data System (ADS)

Fu, Szu-Pei; Young, Yuan-Nan; Peng, Zhangli; Yuan, Hongyan

Lipid bilayer membranes have been extensively studied by coarse-grained molecular dynamics simulations. Numerical efficiency has been reported in the cases of aggressive coarse-graining, where several lipids are coarse-grained into a particle of size 4 6 nm so that there is only one particle in the thickness direction. Yuan et al. proposed a pair-potential between these one-particle-thick coarse-grained lipid particles to capture the mechanical properties of a lipid bilayer membrane (such as gel-fluid-gas phase transitions of lipids, diffusion, and bending rigidity). In this work we implement such interaction potential in LAMMPS to simulate large-scale lipid systems such as vesicles and red blood cells (RBCs). We also consider the effect of cytoskeleton on the lipid membrane dynamics as a model for red blood cell (RBC) dynamics, and incorporate coarse-grained water molecules to account for hydrodynamic interactions. The interaction between the coarse-grained water molecules (explicit solvent molecules) is modeled as a Lennard-Jones (L-J) potential. We focus on two sets of LAMMPS simulations: 1. Vesicle shape transitions with varying enclosed volume; 2. RBC shape transitions with different enclosed volume.

Assessment of Polarization Effect on Efficiency of Levenberg-Marquardt Algorithm in Case of Thin Atmosphere Over Black Surface

NASA Technical Reports Server (NTRS)

Korkin, S.; Lyapustin, A.

2012-01-01

The Levenberg-Marquardt algorithm [1, 2] provides a numerical iterative solution to the problem of minimization of a function over a space of its parameters. In our work, the Levenberg-Marquardt algorithm retrieves optical parameters of a thin (single scattering) plane parallel atmosphere irradiated by collimated infinitely wide monochromatic beam of light. Black ground surface is assumed. Computational accuracy, sensitivity to the initial guess and the presence of noise in the signal, and other properties of the algorithm are investigated in scalar (using intensity only) and vector (including polarization) modes. We consider an atmosphere that contains a mixture of coarse and fine fractions. Following [3], the fractions are simulated using Henyey-Greenstein model. Though not realistic, this assumption is very convenient for tests [4, p.354]. In our case it yields analytical evaluation of Jacobian matrix. Assuming the MISR geometry of observation [5] as an example, the average scattering cosines and the ratio of coarse and fine fractions, the atmosphere optical depth, and the single scattering albedo, are the five parameters to be determined numerically. In our implementation of the algorithm, the system of five linear equations is solved using the fast Cramer s rule [6]. A simple subroutine developed by the authors, makes the algorithm independent from external libraries. All Fortran 90/95 codes discussed in the presentation will be available immediately after the meeting from sergey.v.korkin@nasa.gov by request.

Prediction of unsaturated flow and water backfill during infiltration in layered soils

NASA Astrophysics Data System (ADS)

Cui, Guotao; Zhu, Jianting

2018-02-01

We develop a new analytical infiltration model to determine water flow dynamics around layer interfaces during infiltration process in layered soils. The model mainly involves the analytical solutions to quadratic equations to determine the flux rates around the interfaces. Active water content profile behind the wetting front is developed based on the solution of steady state flow to dynamically update active parameters in sharp wetting front infiltration equations and to predict unsaturated flow in coarse layers before the front reaches an impeding fine layer. The effect of water backfill to saturate the coarse layers after the wetting front encounters the impeding fine layer is analytically expressed based on the active water content profiles. Comparison to the numerical solutions of the Richards equation shows that the new model can well capture water dynamics in relation to the arrangement of soil layers. The steady state active water content profile can be used to predict the saturation state of all layers when the wetting front first passes through these layers during the unsteady infiltration process. Water backfill effect may occur when the unsaturated wetting front encounters a fine layer underlying a coarse layer. Sensitivity analysis shows that saturated hydraulic conductivity is the parameter dictating the occurrence of unsaturated flow and water backfill and can be used to represent the coarseness of soil layers. Water backfill effect occurs in coarse layers between upper and lower fine layers when the lower layer is not significantly coarser than the upper layer.

Injection of mineral dust into the free troposphere during fire events observed with polarization lidar at Limassol, Cyprus

NASA Astrophysics Data System (ADS)

Nisantzi, A.; Mamouri, R. E.; Ansmann, A.; Hadjimitsis, D.

2014-11-01

Four-year observations (2010-2014) with EARLINET polarization lidar and AERONET sun/sky photometer at Limassol (34.7° N, 33° E), Cyprus, were used to study the soil dust content in lofted fire smoke plumes advected from Turkey. This first systematic attempt to characterize less than 3-day-old smoke plumes in terms of particle linear depolarization ratio (PDR), measured with lidar, contributes to the more general effort to properly describe the life cycle of free-tropospheric smoke-dust mixtures from the emission event to phases of long-range transport (> 4 days after emission). We found significant PDR differences with values from 9 to 18% in lofted aerosol layers when Turkish fires contributed to the aerosol burden and of 3-13 % when Turkish fires were absent. High Ångström exponents of 1.4-2.2 during all these events with lofted smoke layers, occurring between 1 and 3 km height, suggest the absence of a pronounced particle coarse mode. When plotted vs. travel time (spatial distance between Limassol and last fire area), PDR decreased strongly from initial values around 16-18% (1 day travel) to 4-8% after 4 days of travel caused by deposition processes. This behavior was found to be in close agreement with findings described in the literature. Computation of particle extinction coefficient and mass concentrations, derived from the lidar observations, separately for fine-mode dust, coarse-mode dust, and non-dust aerosol components show extinction-related dust fractions on the order of 10% (for PDR =4%, travel times > 4 days) and 50% (PDR =15%, 1 day travel time) and respective mass-related dust fractions of 25% (PDR =4%) to 80% (PDR =15%). Biomass burning should therefore be considered as another source of free tropospheric soil dust.

Indoor/outdoor relationships and mass closure of quasi-ultrafine, accumulation and coarse particles in Barcelona schools

NASA Astrophysics Data System (ADS)

Viana, M.; Rivas, I.; Querol, X.; Alastuey, A.; Sunyer, J.; Álvarez-Pedrerol, M.; Bouso, L.; Sioutas, C.

2014-05-01

The mass concentration, chemical composition and sources of quasi-ultrafine (quasi-UFP, PM0.25), accumulation (PM0.25-2.5) and coarse mode (PM2.5-10) particles were determined in indoor and outdoor air at 39 schools in Barcelona (Spain). Quasi-UFP mass concentrations measured (25.6 μg m-3 outdoors, 23.4 μg m-3 indoors) are significantly higher than those reported in other studies, and characterised by higher carbonaceous and mineral matter contents and a lower proportion of secondary inorganic ions. Results suggest that quasi-UFPs in Barcelona are affected by local sources in the schools, mainly human activity (e.g. organic material from textiles, etc., contributing 23-46% to total quasi-UFP mass) and playgrounds (in the form of mineral matter, contributing about 9% to the quasi-UFP mass). The particle size distribution patterns of toxicologically relevant metals and major aerosol components was characterised, displaying two modes for most elements and components, and one mode for inorganic salts (ammonium nitrate and sulfate) and elemental carbon (EC). Regarding metals, Ni and Cr were partitioned mainly in quasi-UFPs and could thus be of interest for epidemiological studies, given their high redox properties. Exposure of children to quasi-UFP mass and chemical species was assessed by comparing the concentrations measured at urban background and traffic areas schools. Finally, three main indoor sources across all size fractions were identified by assessing indoor / outdoor ratios (I / O) of PM species used as their tracers: human activity (organic material), cleaning products, paints and plastics (Cl- source), and a metallic mixed source (comprising combinations of Cu, Zn, Co, Cd, Pb, As, V and Cr). Our results support the need to enforce targeted legislation to determine a minimum "safe" distance between major roads and newly built schools to reduce exposure to traffic-derived metals in quasi-UFPs.

Summer aerosol particle mixing in different climate and source regions of the United Arab Emirates (UAE)

NASA Astrophysics Data System (ADS)

Semeniuk, T. A.; Bruintjes, R. T.; Salazar, V.; Breed, D. W.; Jensen, T. L.; Buseck, P. R.

2005-12-01

The high aerosol loadings over the UAE reflect local to regional natural and anthropogenic pollution sources. To understand the impact of the high levels of pollution on both local and global climate systems, aerosol characterization flights in summer 2002 were used to sample major source areas, and to provide information on the interaction of aerosol particles within different geographic regions of the UAE. Atmospheric information and aerosol samples were collected from the marine/oil-industry region, NW coastal industries and cities, Oman Mountain Range, and NE coastal region. Aerosol samples were collected with multi-stage impactors and were analysed later using transmission electron microscopy. All samples are dominated by mineral grains or mineral aggregates in the coarse-mode fraction, and ammonium sulfate droplets in the fine-mode fraction. Differences in the types of mineral grains (different regional desert sources), inorganic salt and soot fractions, and types of internally mixed particles occur between regions. Oil-related industry sites have an abundance of coated and internally mixed particles, including sulfate-coated mineral grains, and mineral aggregates with chloride and sulfate. Cities have slightly elevated soot fractions, and typically have metal oxides. The NE coastal area is characterized by high soot fractions (local shipping) and mixed volatile droplets (regional Asian pollution). Particle populations within the convection zone over the Oman Mountain Range comprise an external mixture of particles from NW and NE sources, with many deliquesced particles. Both land-sea breezes in the NW regions and convection systems in the mountains mix aerosol particles from different local and regional sources, resulting in the formation of abundant internally mixed particles. The interaction between desert dust and anthropogenic pollution, and in particular the formation of mineral aggregates with chloride and sulfate, enhances the coarse-mode fraction and droplet fraction in industrial and mountainous regions.

Patients with asthma demonstrate airway inflammation after exposure to concentrated ambient particulate matter

EPA Science Inventory

..To the Editor"': Of the three major particulate matter (PM) size fractions (ultrafme, fine and coarse),coarse PM (PM2.5- 10) has been the least examined in terms of its health effects on susceptible populations, this despite having characteristics that make it particula...

Effects of timber harvesting on coarse woody debris in red pine forets across the Great Lakes states, U.S.A.

Treesearch

Matthew D. Duvall; David F. Grigal

1999-01-01

Coarse woody debris (CWD) chronosequences were developed for managed and unmanaged red pine (Pinus resinosa Ait.) stands across the Great Lakes states. Throughout stand development, there is less CWD in managed than in unmanaged forests, and effects of management are strongest in young forests (0-30 years old). At stand initiation, CWD is 80% lower in managed than...

Effects of coarse woody debris and its removal on a channel affected by the 1980 eruption of Mount St. Helens, Washington

Treesearch

Thomas E. Lisle

1995-01-01

Abstract - During the May 18, 1980, eruption of Mount St. Helens, Washington, a pyroclastic surge introduced large volumes of coarse woody debris (CWD) and fine grained sediment to Clearwater Creek, approximately 15 km northeast of the summit. Effects of controlled CWD removal on sediment storage, substrate, and pool frequency and volume were measured in four reaches,...

Theoretical study on interaction of cytochrome f and plastocyanin complex by a simple coarse-grained model with molecular crowding effect

NASA Astrophysics Data System (ADS)

Nakagawa, Satoshi; Kurniawan, Isman; Kodama, Koichi; Arwansyah, Muhammad Saleh; Kawaguchi, Kazutomo; Nagao, Hidemi

2018-03-01

We present a simple coarse-grained model with the molecular crowding effect in solvent to investigate the structure and dynamics of protein complexes including association and/or dissociation processes and investigate some physical properties such as the structure and the reaction rate from the viewpoint of the hydrophobic intermolecular interactions of protein complex. In the present coarse-grained model, a function depending upon the density of hydrophobic amino acid residues in a binding area of the complex is introduced, and the function involves the molecular crowding effect for the intermolecular interactions of hydrophobic amino acid residues between proteins. We propose a hydrophobic intermolecular potential energy between proteins by using the density-dependent function. The present coarse-grained model is applied to the complex of cytochrome f and plastocyanin by using the Langevin dynamics simulation to investigate some physical properties such as the complex structure, the electron transfer reaction rate constant from plastocyanin to cytochrome f and so on. We find that for proceeding the electron transfer reaction, the distance between metals in their active sites is necessary within about 18 Å. We discuss some typical complex structures formed in the present simulation in relation to the molecular crowding effect on hydrophobic interactions.

Coarse-grained models using local-density potentials optimized with the relative entropy: Application to implicit solvation

NASA Astrophysics Data System (ADS)

Sanyal, Tanmoy; Shell, M. Scott

2016-07-01

Bottom-up multiscale techniques are frequently used to develop coarse-grained (CG) models for simulations at extended length and time scales but are often limited by a compromise between computational efficiency and accuracy. The conventional approach to CG nonbonded interactions uses pair potentials which, while computationally efficient, can neglect the inherently multibody contributions of the local environment of a site to its energy, due to degrees of freedom that were coarse-grained out. This effect often causes the CG potential to depend strongly on the overall system density, composition, or other properties, which limits its transferability to states other than the one at which it was parameterized. Here, we propose to incorporate multibody effects into CG potentials through additional nonbonded terms, beyond pair interactions, that depend in a mean-field manner on local densities of different atomic species. This approach is analogous to embedded atom and bond-order models that seek to capture multibody electronic effects in metallic systems. We show that the relative entropy coarse-graining framework offers a systematic route to parameterizing such local density potentials. We then characterize this approach in the development of implicit solvation strategies for interactions between model hydrophobes in an aqueous environment.

Broadband arrayed waveguide grating multiplexers on indium phosphide

NASA Astrophysics Data System (ADS)

Rausch, Kameron

2005-11-01

Coarse Wavelength Division Multiplexing (CWDM) is becoming a popular way to increase the optical throughput of fibers for short to medium haul networks at a reduced cost. The International Telecommunications Union (ITU) has defined the CWDM network to consist of eighteen channels with channel spacings of 20 nm starting at 1270 nm and ending at 1610 nm. Four and eight channel AWGs suitable for CWDM were fabricated using a versatile S-shape design novel to InP. The standard horseshoe layout will not work on semiconductor for AWGs with a free spectral range (FSR) larger than 30 nm. The AWG design provides operation insensitive to thermal and polarization fluctuations; which is key for low cost operation and packaging. It will be shown that, refractive index changes over the large operating wavelength band produced negligible effects in the transmission spectrum. Standard AWG design assumes refractive index is a constant over the operating wavelength band. As a result, the output waveguide separations are held constant on the second star coupler. As the channel number increases, secondary focal dispersion caused from a changing refractive index can have detrimental effects on performance. A new design method will be introduced which includes refractive index dispersion by allowing the output waveguide separations to vary. The new design is consistent with standard design but is applicable in materials with a linear index dispersion over an arbitrarily large wavelength band. Lastly, a method for increasing the transmission using multimode waveguides is discussed. Traditionally, single mode waveguides are required in order to prevent higher order waveguide modes creating ghost images in the output spectrum. Using bend loss and waveguide junction offsets, higher order modes can be filtered from the output, thereby eliminating ghost images and at the same time, increase transmission.

Non-model-based damage identification of plates using principal, mean and Gaussian curvature mode shapes

DOE PAGES

Xu, Yongfeng F.; Zhu, Weidong D.; Smith, Scott A.

2017-07-01

Mode shapes (MSs) have been extensively used to identify structural damage. This paper presents a new non-model-based method that uses principal, mean and Gaussian curvature MSs (CMSs) to identify damage in plates; the method is applicable and robust to MSs associated with low and high elastic modes on dense and coarse measurement grids. A multi-scale discrete differential-geometry scheme is proposed to calculate principal, mean and Gaussian CMSs associated with a MS of a plate, which can alleviate adverse effects of measurement noise on calculating the CMSs. Principal, mean and Gaussian CMSs of a damaged plate and those of an undamagedmore » one are used to yield four curvature damage indices (CDIs), including Maximum-CDIs, Minimum-CDIs, Mean-CDIs and Gaussian-CDIs. Damage can be identified near regions with consistently higher values of the CDIs. It is shown that a MS of an undamaged plate can be well approximated using a polynomial with a properly determined order that fits a MS of a damaged one, provided that the undamaged plate has a smooth geometry and is made of material that has no stiffness and mass discontinuities. New fitting and convergence indices are proposed to quantify the level of approximation of a MS from a polynomial fit to that of a damaged plate and to determine the proper order of the polynomial fit, respectively. A MS of an aluminum plate with damage in the form of a machined thickness reduction area was measured to experimentally investigate the effectiveness of the proposed CDIs in damage identification; the damage on the plate was successfully identified.« less

Non-model-based damage identification of plates using principal, mean and Gaussian curvature mode shapes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Xu, Yongfeng F.; Zhu, Weidong D.; Smith, Scott A.

Mode shapes (MSs) have been extensively used to identify structural damage. This paper presents a new non-model-based method that uses principal, mean and Gaussian curvature MSs (CMSs) to identify damage in plates; the method is applicable and robust to MSs associated with low and high elastic modes on dense and coarse measurement grids. A multi-scale discrete differential-geometry scheme is proposed to calculate principal, mean and Gaussian CMSs associated with a MS of a plate, which can alleviate adverse effects of measurement noise on calculating the CMSs. Principal, mean and Gaussian CMSs of a damaged plate and those of an undamagedmore » one are used to yield four curvature damage indices (CDIs), including Maximum-CDIs, Minimum-CDIs, Mean-CDIs and Gaussian-CDIs. Damage can be identified near regions with consistently higher values of the CDIs. It is shown that a MS of an undamaged plate can be well approximated using a polynomial with a properly determined order that fits a MS of a damaged one, provided that the undamaged plate has a smooth geometry and is made of material that has no stiffness and mass discontinuities. New fitting and convergence indices are proposed to quantify the level of approximation of a MS from a polynomial fit to that of a damaged plate and to determine the proper order of the polynomial fit, respectively. A MS of an aluminum plate with damage in the form of a machined thickness reduction area was measured to experimentally investigate the effectiveness of the proposed CDIs in damage identification; the damage on the plate was successfully identified.« less

Inversion of multiwavelength Raman lidar data for retrieval of bimodal aerosol size distribution

NASA Astrophysics Data System (ADS)

Veselovskii, Igor; Kolgotin, Alexei; Griaznov, Vadim; Müller, Detlef; Franke, Kathleen; Whiteman, David N.

2004-02-01

We report on the feasibility of deriving microphysical parameters of bimodal particle size distributions from Mie-Raman lidar based on a triple Nd:YAG laser. Such an instrument provides backscatter coefficients at 355, 532, and 1064 nm and extinction coefficients at 355 and 532 nm. The inversion method employed is Tikhonov's inversion with regularization. Special attention has been paid to extend the particle size range for which this inversion scheme works to ~10 μm, which makes this algorithm applicable to large particles, e.g., investigations concerning the hygroscopic growth of aerosols. Simulations showed that surface area, volume concentration, and effective radius are derived to an accuracy of ~50% for a variety of bimodal particle size distributions. For particle size distributions with an effective radius of <1 μm the real part of the complex refractive index was retrieved to an accuracy of +/-0.05, the imaginary part was retrieved to 50% uncertainty. Simulations dealing with a mode-dependent complex refractive index showed that an average complex refractive index is derived that lies between the values for the two individual modes. Thus it becomes possible to investigate external mixtures of particle size distributions, which, for example, might be present along continental rims along which anthropogenic pollution mixes with marine aerosols. Measurement cases obtained from the Institute for Tropospheric Research six-wavelength aerosol lidar observations during the Indian Ocean Experiment were used to test the capabilities of the algorithm for experimental data sets. A benchmark test was attempted for the case representing anthropogenic aerosols between a broken cloud deck. A strong contribution of particle volume in the coarse mode of the particle size distribution was found.

Inversion of multiwavelength Raman lidar data for retrieval of bimodal aerosol size distribution.

PubMed

Veselovskii, Igor; Kolgotin, Alexei; Griaznov, Vadim; Müller, Detlef; Franke, Kathleen; Whiteman, David N

2004-02-10

We report on the feasibility of deriving microphysical parameters of bimodal particle size distributions from Mie-Raman lidar based on a triple Nd:YAG laser. Such an instrument provides backscatter coefficients at 355, 532, and 1064 nm and extinction coefficients at 355 and 532 nm. The inversion method employed is Tikhonov's inversion with regularization. Special attention has been paid to extend the particle size range for which this inversion scheme works to approximately 10 microm, which makes this algorithm applicable to large particles, e.g., investigations concerning the hygroscopic growth of aerosols. Simulations showed that surface area, volume concentration, and effective radius are derived to an accuracy of approximately 50% for a variety of bimodal particle size distributions. For particle size distributions with an effective radius of < 1 microm the real part of the complex refractive index was retrieved to an accuracy of +/- 0.05, the imaginary part was retrieved to 50% uncertainty. Simulations dealing with a mode-dependent complex refractive index showed that an average complex refractive index is derived that lies between the values for the two individual modes. Thus it becomes possible to investigate external mixtures of particle size distributions, which, for example, might be present along continental rims along which anthropogenic pollution mixes with marine aerosols. Measurement cases obtained from the Institute for Tropospheric Research six-wavelength aerosol lidar observations during the Indian Ocean Experiment were used to test the capabilities of the algorithm for experimental data sets. A benchmark test was attempted for the case representing anthropogenic aerosols between a broken cloud deck. A strong contribution of particle volume in the coarse mode of the particle size distribution was found.

Lennard-Jones type pair-potential method for coarse-grained lipid bilayer membrane simulations in LAMMPS

NASA Astrophysics Data System (ADS)

Fu, S.-P.; Peng, Z.; Yuan, H.; Kfoury, R.; Young, Y.-N.

2017-01-01

Lipid bilayer membranes have been extensively studied by coarse-grained molecular dynamics simulations. Numerical efficiencies have been reported in the cases of aggressive coarse-graining, where several lipids are coarse-grained into a particle of size 4 ∼ 6 nm so that there is only one particle in the thickness direction. Yuan et al. proposed a pair-potential between these one-particle-thick coarse-grained lipid particles to capture the mechanical properties of a lipid bilayer membrane, such as gel-fluid-gas phase transitions of lipids, diffusion, and bending rigidity Yuan et al. (2010). In this work we implement such an interaction potential in LAMMPS to simulate large-scale lipid systems such as a giant unilamellar vesicle (GUV) and red blood cells (RBCs). We also consider the effect of cytoskeleton on the lipid membrane dynamics as a model for RBC dynamics, and incorporate coarse-grained water molecules to account for hydrodynamic interactions. The interaction between the coarse-grained water molecules (explicit solvent molecules) is modeled as a Lennard-Jones (L-J) potential. To demonstrate that the proposed methods do capture the observed dynamics of vesicles and RBCs, we focus on two sets of LAMMPS simulations: 1. Vesicle shape transitions with enclosed volume; 2. RBC shape transitions with different enclosed volume. Finally utilizing the parallel computing capability in LAMMPS, we provide some timing results for parallel coarse-grained simulations to illustrate that it is possible to use LAMMPS to simulate large-scale realistic complex biological membranes for more than 1 ms.

Comparative toxicity of size-fractionated airborne particulate matter obtained from different cities in the United States

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gilmour, M.I.; McGee, J.; Duvall, R.M.

2007-07-01

Hundreds of epidemiological studies have shown that exposure to ambient particulate matter (PM) is associated with dose-dependent increases in morbidity and mortality. While early reports focused on PM less than 10 {mu}m (PM10), numerous studies have since shown that the effects can occur with PM stratified into ultrafine (UF), fine (FI), and coarse (CO) size modes despite the fact that these materials differ significantly in both evolution and chemistry. Furthermore the chemical makeup of these different size fractions can vary tremendously depending on location, meteorology, and source profile. For this reason, high-volume three-stage particle impactors with the capacity to collectmore » UF, FI, and CO particles were deployed to four different locations in the United States (Seattle, WA; Salt Lake City, UT; Sterling Forest and South Bronx, NY), and weekly samples were collected for 1 mo in each place. The particles were extracted, assayed for a standardized battery of chemical components, and instilled into mouse lungs (female BALB/c) at doses of 25 and 100 {mu}g. Eighteen hours later animals were euthanized and parameters of injury and inflammation were monitored in the bronchoalveolar lavage fluid and plasma. Of the four locations, the South Bronx coarse fraction was the most potent sample in both pulmonary and systemic biomarkers. Receptor source modeling on the PM2.5 samples showed that the South Bronx sample was heavily influenced by emissions from coal fired power plants (31%) and mobile sources (22%). Further studies will assess how source profiles correlate with the observed effects for all locations and size fractions.« less

Effects of rumen-escape starch and coarseness of ingredients in pelleted concentrates on performance and rumen wall characteristics of rosé veal calves.

PubMed

Vestergaard, M; Jarltoft, T C; Kristensen, N B; Børsting, C F

2013-08-01

The objective was to study the effect of rumen-escape starch and coarseness of ingredients in pelleted concentrates on performance, carcass quality and rumen wall characteristics in rosé veal calf production. Two alternative concentrates (Coarse and Slow) were compared with a traditional (Control) concentrate. Control was based on finely ground ingredients, whereas in Coarse, the same ingredients were coarsely ground resulting in a mean particle size before pelleting of 1.5 in Coarse and 0.6 mm in Control. Slow compared with Control and Coarse contained finely ground sorghum and corn instead of barley and wheat which increased the amount of rumen-escape starch to 59 compared with 22 g/kg in Control and Coarse. All concentrates had the same total starch (362 g/kg), NDF (168 g/kg), CP (154 g/kg) and DE (15.5 MJ/kg DM) content and a pellet diameter of 3.5 to 4 mm. Use of an 'indicator of starch digestibility' method gave a value of 98.6% for Control and Coarse and 91.1% for Slow (P < 0.001). A total of 57 Holstein bull calves (n = 19 per treatment) were offered one of the three concentrates ad libitum from weaning (2½ months of age) to slaughter (<10 months of age). Concentrate intake was recorded individually. Barley straw was available ad libitum but intake was not recorded. Average daily gain (1.43 kg/day), concentrate conversion efficiency (3.7 kg DM concentrate/kg gain), LW at slaughter (386 kg), carcass weight (194 kg) and EUROP conformation (3.9) were not affected by type of concentrate (P > 0.05). Papillae length and shape evaluated in atrium ruminis and the cranial part of the ventral rumen sac at slaughter were not affected by type of concentrate (P > 0.05). Rumen wall characteristics showed degrees of plaque formation (i.e., papillary aggregation), hyperaemia and necrotic areas in all treatment groups, but with no general difference between type of concentrate (P > 0.05). Incidence of liver abscesses (LAs, 16%) was not affected by type of concentrate (P > 0.05). There were no differences in performance or rumen wall characteristics between liver-abscessed and non-abscessed calves. The results show a high level of production performance with the three types of pelleted concentrates and indicates that neither the more coarse ingredients nor the additional rumen-escape starch tested, when fed ad libitum, could improve rumen wall characteristics or reduce LAs of rosé veal calves.

A Factorial Design Approach to Analyse the Effect of Coarse Recycled Concrete Aggregates on the Properties of Hot Mix Asphalt

NASA Astrophysics Data System (ADS)

Tanty, Kiranbala; Mukharjee, Bibhuti Bhusan; Das, Sudhanshu Shekhar

2018-06-01

The present study investigates the effect of replacement of coarse fraction of natural aggregates by recycled concrete aggregates on the properties of hot mix asphalt (HMA) using general factorial design approach. For this two factors i.e. recycled coarse aggregates percentage [RCA (%)] and bitumen content percentage [BC (%)] are considered. Tests have been carried out on the HMA type bituminous concrete, prepared with varying RCA (%) and BC (%). Analysis of variance has been performed on the experimental data to determine the effect of the chosen factors on various parameters such as stability, flow, air void, void mineral aggregate, void filled with bitumen and bulk density. The study depicts that RCA (%) and BC (%) have significant effect on the selected responses as p value is less than the chosen significance level. In addition to above, the outcomes of the statistical analysis indicate that interaction between factors have significant effects on void mineral aggregate and bulk density of bituminous concrete.

A Factorial Design Approach to Analyse the Effect of Coarse Recycled Concrete Aggregates on the Properties of Hot Mix Asphalt

NASA Astrophysics Data System (ADS)

Tanty, Kiranbala; Mukharjee, Bibhuti Bhusan; Das, Sudhanshu Shekhar

2018-02-01

The present study investigates the effect of replacement of coarse fraction of natural aggregates by recycled concrete aggregates on the properties of hot mix asphalt (HMA) using general factorial design approach. For this two factors i.e. recycled coarse aggregates percentage [RCA (%)] and bitumen content percentage [BC (%)] are considered. Tests have been carried out on the HMA type bituminous concrete, prepared with varying RCA (%) and BC (%). Analysis of variance has been performed on the experimental data to determine the effect of the chosen factors on various parameters such as stability, flow, air void, void mineral aggregate, void filled with bitumen and bulk density. The study depicts that RCA (%) and BC (%) have significant effect on the selected responses as p value is less than the chosen significance level. In addition to above, the outcomes of the statistical analysis indicate that interaction between factors have significant effects on void mineral aggregate and bulk density of bituminous concrete.

Quantum theory of multiscale coarse-graining.

PubMed

Han, Yining; Jin, Jaehyeok; Wagner, Jacob W; Voth, Gregory A

2018-03-14

Coarse-grained (CG) models serve as a powerful tool to simulate molecular systems at much longer temporal and spatial scales. Previously, CG models and methods have been built upon classical statistical mechanics. The present paper develops a theory and numerical methodology for coarse-graining in quantum statistical mechanics, by generalizing the multiscale coarse-graining (MS-CG) method to quantum Boltzmann statistics. A rigorous derivation of the sufficient thermodynamic consistency condition is first presented via imaginary time Feynman path integrals. It identifies the optimal choice of CG action functional and effective quantum CG (qCG) force field to generate a quantum MS-CG (qMS-CG) description of the equilibrium system that is consistent with the quantum fine-grained model projected onto the CG variables. A variational principle then provides a class of algorithms for optimally approximating the qMS-CG force fields. Specifically, a variational method based on force matching, which was also adopted in the classical MS-CG theory, is generalized to quantum Boltzmann statistics. The qMS-CG numerical algorithms and practical issues in implementing this variational minimization procedure are also discussed. Then, two numerical examples are presented to demonstrate the method. Finally, as an alternative strategy, a quasi-classical approximation for the thermal density matrix expressed in the CG variables is derived. This approach provides an interesting physical picture for coarse-graining in quantum Boltzmann statistical mechanics in which the consistency with the quantum particle delocalization is obviously manifest, and it opens up an avenue for using path integral centroid-based effective classical force fields in a coarse-graining methodology.

Quantum to classical transition in quantum field theory

NASA Astrophysics Data System (ADS)

Lombardo, Fernando C.

1998-12-01

We study the quatum to classical transition process in the context of quantum field theory. Extending the influence functional formalism of Feynman and Vernon, we study the decoherence process for self-interacting quantum fields in flat space. We also use this formalism for arbitrary geometries to analyze the quantum to classical transition in quantum gravity. After summarizing the main results known for the quantum Brownian motion, we consider a self-interacting field theory in Minkowski spacetime. We compute a coarse grained effective action by integrating out the field modes with wavelength shorter than a critical value. From this effective action we obtain the evolution equation for the reduced density matrix (master equation). We compute the diffusion coefficients for this equation and analyze the decoherence induced on the long-wavelength modes. We generalize the results to the case of a conformally coupled scalar field in de Sitter spacetime. We show that the decoherence is effective as long as the critical wavelength is taken to be not shorter than the Hubble radius. On the other hand, we study the classical limit for scalar-tensorial models in two dimensions. We consider different couplings between the dilaton and the scalar field. We discuss the Hawking radiation process and, from an exact evaluation of the influence functional, we study the conditions by which decoherence ensures the validity of the semiclassical approximation in cosmological metrics. Finally we consider four dimensional models with massive scalar fields, arbitrary coupled to the geometry. We compute the Einstein-Langevin equations in order to study the effect of the fluctuations induced by the quantum fields on the classical geometry.

Effects of termite activities on coarse woody debris decomposition in an intact lowland mixed dipterocarp forest of Brunei Darussalam

NASA Astrophysics Data System (ADS)

Lee, S.; Kim, S.; Roh, Y.; Son, Y.

2016-12-01

Tropical forests play a critical role in mitigating climate change, because they sequester carbon more than any other terrestrial ecosystems. In addition, coarse woody debris is one of the main carbon storages, accounting for 10 - 40% of the tropical forest carbon. Carbon in coarse woody debris is released by various activities of organisms, and particularly termite's feeding activities are known to be a main process in tropical forests. Therefore, investigating the effects of termite activities on coarse woody debris decomposition is important to understanding carbon cycles of tropical forests. This study was conducted in an intact lowland mixed dipterocarp forest (MDF) of Brunei Darussalam, and three main MDF tree species (Dillenia beccariana, Macaranga bancana, and Elateriospermum tapos) were selected. Coarse woody debris samples of both 10 cm diameter and length were prepared, and half of samples were covered twice with nylon net (mesh size 1.5 mm × 1.5 mm) to prevent termite's approach. Three permanent plots were installed in January, 2015 and 36 samples per plot (3 species × 2 treatments × 6 replicates) were placed at the soil surface. Weights of each sample were recorded at initial time, and weighed again at an interval of 6 months until July, 2016. On average, uncovered and covered samples lost 32.4 % and 20.0 % of their initial weights, respectively. Weight loss percentage was highest in uncovered samples of M. bancana (43.8 %), and lowest in covered samples of E. tapos (14.7 %). Two-way ANOVA showed that the effects of the tree species and the termite exclusion treatment on coarse woody debris decomposition were statistically significant (P < 0.001). Also the interaction between the tree species and the termite exclusion treatment was significant (P < 0.001). The results reveal that termite activities promote the coarse woody debris decomposition and they influence differently along the tree species. In addition, as a result of repeated ANOVA, weight loss rates were accelerated over time and this time-acceleration effects were significantly different among the tree species (P < 0.05) and the termite exclusion treatment (P< 0.001). * Supported by research grants from the National Research Foundation of Korea (R1D1A1A01) * Supported by BK21Plus Eco-Leader Education Center.

Ion composition of coarse and fine particles in Iasi, north-eastern Romania: Implications for aerosols chemistry in the area

NASA Astrophysics Data System (ADS)

Arsene, Cecilia; Olariu, Romeo Iulian; Zarmpas, Pavlos; Kanakidou, Maria; Mihalopoulos, Nikolaos

2011-02-01

Atmospheric loadings of the aerosols coarse (particles of AED > 1.5 μm) and fine fractions (particles of AED < 1.5 μm) were determined in Iasi, north-eastern Romania from January 2007 to March 2008. Concentrations of water soluble ions (SO 42-, NO 3-, Cl -, C 2O 42-, NH 4+, K +, Na +, Ca 2+ and Mg 2+) were measured using ion chromatography (IC). In the coarse particles, calcium and carbonate are the main ionic constituents (˜65%), whereas in the fine particles SO 42-, NO 3-, Cl - and NH 4+ are the most abundant. Temperature and relative humidity (RH) associated with increased concentrations of specific ions might be the main factors controlling the aerosol chemistry at the investigated site. From August 2007 to March 2008 high RH (as high as 80% for about 82% of the investigated period) was prevailing in Iasi and the collected particles were expected to have deliquesced and form an internal mixture. We found that in fine particles ammonium nitrate (NH 4NO 3) is important especially under conditions of NH 4+/SO 42- ratio higher than 1.5 and high RH (RH above deliquescence of NH 4Cl, NH 4NO 3 and (NH 4) 2SO 4). At the investigated site large ammonium artifacts may occur due to inter-particle interaction especially under favorable meteorological conditions. A methodology for estimating the artifact free ambient ammonium concentration is proposed for filter pack sampling data of deliquesced particles. Nitrate and sulfate ions in coarse particles are probably formed via reactions of nitric and sulfuric acid with calcium carbonate and sodium chloride which during specific seasons are abundant at the investigated site. In the fine mode sulfate concentration maximized during summer (due to enhanced photochemistry) and winter (due to high concentration of SO 2 emitted from coal burning). Natural contributions, dust or sea-salt related, prevail mainly in the coarse particles. From May 2007 to August 2007, when air masses originated mainly from Black Sea, in the coarse particles an nss-Cl/Na ratio of 1.11 was measured. Elevated levels of chloride in fine particles have been attributed to waste burning in the proximity of the investigated site or to NaCl salt widely spread on roads during winter. Considering the importance of atmospheric aerosols, this study may constitute a reference point for Eastern Europe.

PaLaCe: A Coarse-Grain Protein Model for Studying Mechanical Properties.

PubMed

Pasi, Marco; Lavery, Richard; Ceres, Nicoletta

2013-01-08

We present a coarse-grain protein model PaLaCe (Pasi-Lavery-Ceres) that has been developed principally to allow fast computational studies of protein mechanics and to clarify the links between mechanics and function. PaLaCe uses a two-tier protein representation with one to three pseudoatoms representing each amino acid for the main nonbonded interactions, combined with atomic-scale peptide groups and some side chain atoms to allow the explicit representation of backbone hydrogen bonds and to simplify the treatment of bonded interactions. The PaLaCe force field is composed of physics-based terms, parametrized using Boltzmann inversion of conformational probability distributions derived from a protein structure data set, and iteratively refined to reproduce the experimental distributions. PaLaCe has been implemented in the MMTK simulation package and can be used for energy minimization, normal mode calculations, and molecular or stochastic dynamics. We present simulations with PaLaCe that test its ability to maintain stable structures for folded proteins, reproduce their dynamic fluctuations, and correctly model large-scale, force-induced conformational changes.

Comparative short-term inhalation toxicity of five organic diketopyrrolopyrrole pigments and two inorganic iron-oxide-based pigments

PubMed Central

Hofmann, Thomas; Ma-Hock, Lan; Strauss, Volker; Treumann, Silke; Rey Moreno, Maria; Neubauer, Nicole; Wohlleben, Wendel; Gröters, Sibylle; Wiench, Karin; Veith, Ulrich; Teubner, Wera; van Ravenzwaay, Bennard; Landsiedel, Robert

2016-01-01

Abstract Diketopyrrolopyrroles (DPP) are a relatively new class of organic high-performance pigments. The present inhalation and particle characterization studies were performed to compare the effects of five DPP-based pigments (coarse and fine Pigment Red 254, coarse and fine meta-chloro DPP isomer and one form of mixed chlorinated DPP isomers) and compare it to coarse and fine inorganic Pigment Red 101. Wistar rats were exposed head-nose to atmospheres of the respective materials for 6 h/day on 5 consecutive days. Target concentrations were 30 mg/m3 as high dose for all compounds and selected based occupational exposure limits for respirable nuisance dust. Toxicity was determined after end of exposure and after 3-week recovery using broncho-alveolar lavage fluid (BALF) and microscopic examinations of the entire respiratory tract. Mixed chlorinated DPP isomers and coarse meta-chloro DPP isomer caused marginal changes in BALF, consisting of slight increases of polymorphonuclear neutrophils, and in case of coarse meta-chloro DPP increased MCP-1 and osteopontin levels. Mixed chlorinated DPP isomers, Pigment Red 254, and meta-chloro DPP caused pigment deposits and phagocytosis by alveolar macrophages, slight hypertrophy/hyperplasia of the bronchioles and alveolar ducts, but without evidence of inflammation. In contrast, only pigment deposition and pigment phagocytosis were observed after exposure to Pigment Red 101. All pigments were tolerated well and caused only marginal effects in BALF or no effects at all. Only minor effects were seen on the lung by microscopic examination. There was no evidence of systemic inflammation based on acute-phase protein levels in blood. PMID:27387137

Multiscale virtual particle based elastic network model (MVP-ENM) for normal mode analysis of large-sized biomolecules.

PubMed

Xia, Kelin

2017-12-20

In this paper, a multiscale virtual particle based elastic network model (MVP-ENM) is proposed for the normal mode analysis of large-sized biomolecules. The multiscale virtual particle (MVP) model is proposed for the discretization of biomolecular density data. With this model, large-sized biomolecular structures can be coarse-grained into virtual particles such that a balance between model accuracy and computational cost can be achieved. An elastic network is constructed by assuming "connections" between virtual particles. The connection is described by a special harmonic potential function, which considers the influence from both the mass distributions and distance relations of the virtual particles. Two independent models, i.e., the multiscale virtual particle based Gaussian network model (MVP-GNM) and the multiscale virtual particle based anisotropic network model (MVP-ANM), are proposed. It has been found that in the Debye-Waller factor (B-factor) prediction, the results from our MVP-GNM with a high resolution are as good as the ones from GNM. Even with low resolutions, our MVP-GNM can still capture the global behavior of the B-factor very well with mismatches predominantly from the regions with large B-factor values. Further, it has been demonstrated that the low-frequency eigenmodes from our MVP-ANM are highly consistent with the ones from ANM even with very low resolutions and a coarse grid. Finally, the great advantage of MVP-ANM model for large-sized biomolecules has been demonstrated by using two poliovirus virus structures. The paper ends with a conclusion.

Analysis of the Impact of Major Dust Events on the Aerosols Characteristics over Saudi Arabia

NASA Astrophysics Data System (ADS)

Farahat, Ashraf; El-Askary, Hesham; Al-Shaibani, Abdulaziz; Hariri, Mustafa M.

2015-04-01

The Kingdom of Saudi Arabia is a major source of atmospheric dust. Frequent dust storms blow up and significantly affect human activities, airports and citizens' health. Aerosols optical and physical characteristics are influenced by major dust storms outbreaks. In this, paper, ground based AERONET measurements are integrated with space-borne sensors, namely MODIS and CALIPSO to analyze aerosols' characteristics during March - May of 2009 where a massive dust storm blew up and caused a widespread heavy atmospheric dust load over Saudi Arabia and the same period during 2010, where less dust activities were reported. The MODIS Deep Blue AOD analysis showed similar aerosols pattern over the land, however a substantial variance in aerosol loading during March - May 2009 compared with the same period in 2010 was observed. The angstrom exponent analysis showed that the majority of aerosol measurements in 2009 and 2010 are dominated by coarse-mode particles with angstrom exponent < 0.5. Detailed analysis of aerosol optical properties shows significant influence of coarse mode particles in the enhanced aerosol loading in 2009. The volume depolarization rations (VDR) derived from CALIPSO backscattering measurements is used to find latitudinal profile of mean aerosol optical depth to indicate the type of particles and to discriminate spherical aerosols with non-spherical particles. Acknowledgement The authors would like to acknowledge the support provided by the King Abdel Aziz City for Science & Technology (KACST) for funding this work under grant No. (MT-32-76). The support provided by the Deanship of Research at King Fahd University of Petroleum & Minerals (KFUPM) is gratefully acknowledged.

The 1845 Hekla eruption: Grain-size characteristics of a tephra layer

NASA Astrophysics Data System (ADS)

Gudnason, Jonas; Thordarson, Thor; Houghton, Bruce F.; Larsen, Gudrun

2018-01-01

The 1845 eruption is commonly viewed as a typical Hekla eruption. It is a key event in the eruptive history of the volcano, as it is one of the best documented Hekla eruptions, in terms of contemporary accounts and observations. The eruption started on 2 September 1845 with an intense, hour long explosive Plinian phase that passed into effusive activity, ending on the 16 March 1846. The amount of tephra produced in the opening phase was 0.13 km3/7.5 × 1010 kg. The total grain-size distribution of the deposit is bimodal with a dominant coarse mode at - 2.5 φ (5.6 mm) and a broad finer mode at 3 to 4.5 φ (0.125 to 0.045 mm). At individual sites, the grain-size distribution of the tephra from the Plinian opening phase is also commonly (not always) bimodal. Deconvolved grain-size distributions exhibit distinctly different sedimentation patterns of the coarse and fine subpopulations. The lapilli-dominated subpopulation fines rapidly with transport, while the ash-dominated subpopulation shows less changes with distance, indicating premature sedimentation of fines by aggregation from the 1845 volcanic plume. Tephra deposition was to the ESE of the volcano from a 19 km (a.s.l.) high eruption plume. The plume front travelled at speeds of 16-19 m s- 1. Reports of ash deposition onto ships near the Faroe and Shetland Islands, 700 to 1100 km away from Hekla, demonstrate that even moderate-sized Hekla eruptions can affect very large parts of European air-space.

Chemical Characterization of Ambient Coarse Particulate Matter in Rural Areas of Arizona Impacted by Significant Population Growth

EPA Science Inventory

Characterization of PMc is critical to the understanding of recently observed adverse health effects (e.g., asthma, reduced cardiac variability, etc) from coarse particles in ambient air. PMc mass an (PMc, particles between PM2.5 and PM10) in a rural area of increasing populati...

Effects of Particle Size on the Shear Behavior of Coarse Grained Soils Reinforced with Geogrid.

PubMed

Kim, Daehyeon; Ha, Sungwoo

2014-02-07

In order to design civil structures that are supported by soils, the shear strength parameters of soils are required. Due to the large particle size of coarse-grained soils, large direct shear tests should be performed. In this study, large direct shear tests on three types of coarse grained soils (4.5 mm, 7.9 mm, and 15.9 mm) were performed to evaluate the effects of particle size on the shear behavior of coarse grained soils with/without geogrid reinforcements. Based on the direct shear test results, it was found that, in the case of no-reinforcement, the larger the maximum particle size became, the larger the friction angle was. Compared with the no-reinforcement case, the cases reinforced with either soft geogrid or stiff geogrid have smaller friction angles. The cohesion of the soil reinforced with stiff geogrid was larger than that of the soil reinforced with soft geogrid. The difference in the shear strength occurs because the case with a stiff geogrid has more soil to geogrid contact area, leading to the reduction in interlocking between soil particles.

Kelp, cobbles, and currents: Biologic reduction of coarse grain entrainment stress

USGS Publications Warehouse

Masteller, Claire C; Finnegan, Noah J; Warrick, Jonathan; Miller, Ian M.

2015-01-01

Models quantifying the onset of sediment motion do not typically account for the effect of biotic processes because they are difficult to isolate and quantify in relation to physical processes. Here we investigate an example of the interaction of kelp (Order Laminariales) and coarse sediment transport in the coastal zone, where it is possible to directly quantify and test its effect. Kelp is ubiquitous along rocky coastlines and the impact on ecosystems has been well studied. We develop a physical model to explore the reduction in critical shear stress of large cobbles colonized by Nereocystis luetkeana, or bull kelp. Observations of coarse sediment motion at a site in the Strait of Juan de Fuca (northwest United States–Canada boundary channel) confirm the model prediction and show that kelp reduces the critical stress required for transport of a given grain size by as much as 92%, enabling annual coarse sediment transport rates comparable to those of fluvial systems. We demonstrate that biology is fundamental to the physical processes that shape the coastal zone in this setting.

Exploiting protein flexibility to predict the location of allosteric sites

PubMed Central

2012-01-01

Background Allostery is one of the most powerful and common ways of regulation of protein activity. However, for most allosteric proteins identified to date the mechanistic details of allosteric modulation are not yet well understood. Uncovering common mechanistic patterns underlying allostery would allow not only a better academic understanding of the phenomena, but it would also streamline the design of novel therapeutic solutions. This relatively unexplored therapeutic potential and the putative advantages of allosteric drugs over classical active-site inhibitors fuel the attention allosteric-drug research is receiving at present. A first step to harness the regulatory potential and versatility of allosteric sites, in the context of drug-discovery and design, would be to detect or predict their presence and location. In this article, we describe a simple computational approach, based on the effect allosteric ligands exert on protein flexibility upon binding, to predict the existence and position of allosteric sites on a given protein structure. Results By querying the literature and a recently available database of allosteric sites, we gathered 213 allosteric proteins with structural information that we further filtered into a non-redundant set of 91 proteins. We performed normal-mode analysis and observed significant changes in protein flexibility upon allosteric-ligand binding in 70% of the cases. These results agree with the current view that allosteric mechanisms are in many cases governed by changes in protein dynamics caused by ligand binding. Furthermore, we implemented an approach that achieves 65% positive predictive value in identifying allosteric sites within the set of predicted cavities of a protein (stricter parameters set, 0.22 sensitivity), by combining the current analysis on dynamics with previous results on structural conservation of allosteric sites. We also analyzed four biological examples in detail, revealing that this simple coarse-grained methodology is able to capture the effects triggered by allosteric ligands already described in the literature. Conclusions We introduce a simple computational approach to predict the presence and position of allosteric sites in a protein based on the analysis of changes in protein normal modes upon the binding of a coarse-grained ligand at predicted cavities. Its performance has been demonstrated using a newly curated non-redundant set of 91 proteins with reported allosteric properties. The software developed in this work is available upon request from the authors. PMID:23095452

Exploiting protein flexibility to predict the location of allosteric sites.

PubMed

Panjkovich, Alejandro; Daura, Xavier

2012-10-25

Allostery is one of the most powerful and common ways of regulation of protein activity. However, for most allosteric proteins identified to date the mechanistic details of allosteric modulation are not yet well understood. Uncovering common mechanistic patterns underlying allostery would allow not only a better academic understanding of the phenomena, but it would also streamline the design of novel therapeutic solutions. This relatively unexplored therapeutic potential and the putative advantages of allosteric drugs over classical active-site inhibitors fuel the attention allosteric-drug research is receiving at present. A first step to harness the regulatory potential and versatility of allosteric sites, in the context of drug-discovery and design, would be to detect or predict their presence and location. In this article, we describe a simple computational approach, based on the effect allosteric ligands exert on protein flexibility upon binding, to predict the existence and position of allosteric sites on a given protein structure. By querying the literature and a recently available database of allosteric sites, we gathered 213 allosteric proteins with structural information that we further filtered into a non-redundant set of 91 proteins. We performed normal-mode analysis and observed significant changes in protein flexibility upon allosteric-ligand binding in 70% of the cases. These results agree with the current view that allosteric mechanisms are in many cases governed by changes in protein dynamics caused by ligand binding. Furthermore, we implemented an approach that achieves 65% positive predictive value in identifying allosteric sites within the set of predicted cavities of a protein (stricter parameters set, 0.22 sensitivity), by combining the current analysis on dynamics with previous results on structural conservation of allosteric sites. We also analyzed four biological examples in detail, revealing that this simple coarse-grained methodology is able to capture the effects triggered by allosteric ligands already described in the literature. We introduce a simple computational approach to predict the presence and position of allosteric sites in a protein based on the analysis of changes in protein normal modes upon the binding of a coarse-grained ligand at predicted cavities. Its performance has been demonstrated using a newly curated non-redundant set of 91 proteins with reported allosteric properties. The software developed in this work is available upon request from the authors.

Diet structure, butyric acid, and fermentable carbohydrates influence growth performance, gut morphology, and cecal fermentation characteristics in broilers.

PubMed

Qaisrani, S N; van Krimpen, M M; Kwakkel, R P; Verstegen, M W A; Hendriks, W H

2015-09-01

An experiment with 288 male (Ross 308) 1-d-old broilers was conducted to test the hypothesis that a coarse diet supplemented with butyric acid (BA) and fermentable carbohydrates (FC) improves performance of broilers with a poorly digestible protein source. The interaction effects of diet structure (fine or coarse), FC supplementation (with or without), and BA supplementation (with or without) in a poorly digestible diet based on rapeseed meal (RSM) were tested in a factorial arrangement of 8 (2×2×2) dietary treatments. The coarseness of the diet affected feed intake (FI) (P<0.001), BW gain (P=0.001), and the feed conversion ratio (FCR) (P=0.001) positively. Broilers fed the coarse diets had, on average, 14% heavier gizzards and 11, 7, 5, and 6% lower relative empty weights of the crop, duodenum, jejunum, and ileum, respectively, compared with those fed the fine diets. Dietary coarseness resulted in, on average, 6% greater ileal protein digestibility, 20% lower gizzard pH, 19% greater villus height, 18% lower crypt depth, and 23% reduced cecal branched chain fatty acids (BCFA) compared with chickens fed the fine diets. Broilers fed BA-supplemented diets had an improved FCR (P=0.004) and decreased crypt depth (P<0.001) compared with those fed diets without BA. Fermentable carbohydrate supplementation did not influence growth performance, gut development, or contents of total BCFA and total biogenic amines in the cecal digesta (P>0.05). Supplementation with FC, however, decreased the cecal concentration of spermine by approximately 31% compared with broilers fed diets without FC (P=0.002). In conclusion, feeding a coarse diet supplemented with BA improved performance of broilers fed a diet containing a poorly digestible protein source. The negative effects of a poorly digestible protein source can thus be partly counterbalanced by coarse grinding and BA supplementation in the diet. © The Author 2015. Published by Oxford University Press on behalf of Poultry Science Association.

Diet structure, butyric acid, and fermentable carbohydrates influence growth performance, gut morphology, and cecal fermentation characteristics in broilers

PubMed Central

Qaisrani, S. N.; van Krimpen, M. M.; Kwakkel, R. P.; Verstegen, M. W. A.; Hendriks, W. H.

2015-01-01

An experiment with 288 male (Ross 308) 1-d-old broilers was conducted to test the hypothesis that a coarse diet supplemented with butyric acid (BA) and fermentable carbohydrates (FC) improves performance of broilers with a poorly digestible protein source. The interaction effects of diet structure (fine or coarse), FC supplementation (with or without), and BA supplementation (with or without) in a poorly digestible diet based on rapeseed meal (RSM) were tested in a factorial arrangement of 8 (2 × 2 × 2) dietary treatments. The coarseness of the diet affected feed intake (FI) (P < 0.001), BW gain (P = 0.001), and the feed conversion ratio (FCR) (P = 0.001) positively. Broilers fed the coarse diets had, on average, 14% heavier gizzards and 11, 7, 5, and 6% lower relative empty weights of the crop, duodenum, jejunum, and ileum, respectively, compared with those fed the fine diets. Dietary coarseness resulted in, on average, 6% greater ileal protein digestibility, 20% lower gizzard pH, 19% greater villus height, 18% lower crypt depth, and 23% reduced cecal branched chain fatty acids (BCFA) compared with chickens fed the fine diets. Broilers fed BA-supplemented diets had an improved FCR (P = 0.004) and decreased crypt depth (P < 0.001) compared with those fed diets without BA. Fermentable carbohydrate supplementation did not influence growth performance, gut development, or contents of total BCFA and total biogenic amines in the cecal digesta (P > 0.05). Supplementation with FC, however, decreased the cecal concentration of spermine by approximately 31% compared with broilers fed diets without FC (P = 0.002). In conclusion, feeding a coarse diet supplemented with BA improved performance of broilers fed a diet containing a poorly digestible protein source. The negative effects of a poorly digestible protein source can thus be partly counterbalanced by coarse grinding and BA supplementation in the diet. PMID:26175052

A stochastic-geometric model of soil variation in Pleistocene patterned ground

NASA Astrophysics Data System (ADS)

Lark, Murray; Meerschman, Eef; Van Meirvenne, Marc

2013-04-01

In this paper we examine the spatial variability of soil in parent material with complex spatial structure which arises from complex non-linear geomorphic processes. We show that this variability can be better-modelled by a stochastic-geometric model than by a standard Gaussian random field. The benefits of the new model are seen in the reproduction of features of the target variable which influence processes like water movement and pollutant dispersal. Complex non-linear processes in the soil give rise to properties with non-Gaussian distributions. Even under a transformation to approximate marginal normality, such variables may have a more complex spatial structure than the Gaussian random field model of geostatistics can accommodate. In particular the extent to which extreme values of the variable are connected in spatially coherent regions may be misrepresented. As a result, for example, geostatistical simulation generally fails to reproduce the pathways for preferential flow in an environment where coarse infill of former fluvial channels or coarse alluvium of braided streams creates pathways for rapid movement of water. Multiple point geostatistics has been developed to deal with this problem. Multiple point methods proceed by sampling from a set of training images which can be assumed to reproduce the non-Gaussian behaviour of the target variable. The challenge is to identify appropriate sources of such images. In this paper we consider a mode of soil variation in which the soil varies continuously, exhibiting short-range lateral trends induced by local effects of the factors of soil formation which vary across the region of interest in an unpredictable way. The trends in soil variation are therefore only apparent locally, and the soil variation at regional scale appears random. We propose a stochastic-geometric model for this mode of soil variation called the Continuous Local Trend (CLT) model. We consider a case study of soil formed in relict patterned ground with pronounced lateral textural variations arising from the presence of infilled ice-wedges of Pleistocene origin. We show how knowledge of the pedogenetic processes in this environment, along with some simple descriptive statistics, can be used to select and fit a CLT model for the apparent electrical conductivity (ECa) of the soil. We use the model to simulate realizations of the CLT process, and compare these with realizations of a fitted Gaussian random field. We show how statistics that summarize the spatial coherence of regions with small values of ECa, which are expected to have coarse texture and so larger saturated hydraulic conductivity, are better reproduced by the CLT model than by the Gaussian random field. This suggests that the CLT model could be used to generate an unlimited supply of training images to allow multiple point geostatistical simulation or prediction of this or similar variables.

Oxidative Potential of ambient particulate matter in Athens, Greece.

NASA Astrophysics Data System (ADS)

Paraskevopoulou, Despina; Bougiatioti, Aikaterini; Fang, Ting; Liakakou, Eleni; Weber, Rodney; Nenes, Athanasios; Mihalopoulos, Nikolaos

2017-04-01

Exposure of populations to airborne particulate matter (PM) is a leading cause of premature death worldwide. Oxidative stress resulting from exposure of chemical species present in PM is a mechanism thought to cause adverse health effects. Apart from radicals present in aerosol, species that can catalytically deplete the antioxidant buffering capacity of cells, called Oxidative Potential (OP), are thought to be particularly toxic. The variability of OP over location, particle age, source and environmental conditions is virtually unknown for most populated regions of the world. Motivated by this, we have built and deployed one of the first operational measurements of OP in Europe at the National Observatory of Athens site in downtown Athens, Greece. OP for fine and coarse mode is measured using a semi-automated dithiothreitol (DTT) assay developed at the Georgia Institute of Technology; the assay measures the oxidation rate of DTT by water-soluble aerosol constituents, and simulates the rate at which the same compounds would deplete antioxidants in-vivo. The DTT oxidation rate per unit volume of air (water-soluble "DTT activity") and aerosol size class (fine, coarse) are used as a measure of aerosol toxicity. We present continuous (24hr average) OP measurements in downtown Athens from July 2016 to January 2017, conducted through quartz fiber filter analysis. The dataset covers a broad range of aerosol sources (pollution from Europe, regional and local biomass burning, dust, marine aerosol, biogenic aerosol) and meteorological conditions. The daily water-soluble DTT activity ranges between 0.02-0.81 nmolmin-1 m-3 (averaging at 0.24 nmolmin-1 m-3) for fine aerosol and between 0.01-0.52 nmolmin-1 m-3 (averaging at 0.08 nmolmin-1 m-3) for coarse particulate matter, indicating that water-soluble fine mode aerosol components possess a significant fraction of the OP. The seasonal variability demonstrates a higher DTT activity during the coldest period of the year for both aerosol fractions; correlation analysis with aerosol tracers provides insights on the relative importance of each aerosol source. We find that OP study shows a reasonable correlation of DTT activity with brown carbon (BrC) (R2=0.47) that ameliorates when BrC derived from wood burning (BrCwb) is taken into consideration (R2=0.56). Wood burning is widely used for domestic heating during wintertime in Greece in place of fuel oil and natural gas since the 2012 economic crisis, so the high OP levels associated with this particular source may exacerbate the health impacts of PM inhalation during periods of intense wood burning. Further attribution of OP with aerosol tracers is then used to quantify the drivers of OP on a seasonal basis.

iMODS: internal coordinates normal mode analysis server.

PubMed

López-Blanco, José Ramón; Aliaga, José I; Quintana-Ortí, Enrique S; Chacón, Pablo

2014-07-01

Normal mode analysis (NMA) in internal (dihedral) coordinates naturally reproduces the collective functional motions of biological macromolecules. iMODS facilitates the exploration of such modes and generates feasible transition pathways between two homologous structures, even with large macromolecules. The distinctive internal coordinate formulation improves the efficiency of NMA and extends its applicability while implicitly maintaining stereochemistry. Vibrational analysis, motion animations and morphing trajectories can be easily carried out at different resolution scales almost interactively. The server is versatile; non-specialists can rapidly characterize potential conformational changes, whereas advanced users can customize the model resolution with multiple coarse-grained atomic representations and elastic network potentials. iMODS supports advanced visualization capabilities for illustrating collective motions, including an improved affine-model-based arrow representation of domain dynamics. The generated all-heavy-atoms conformations can be used to introduce flexibility for more advanced modeling or sampling strategies. The server is free and open to all users with no login requirement at http://imods.chaconlab.org. © The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research.

Estimation of atmospheric columnar organic matter (OM) mass concentration from remote sensing measurements of aerosol spectral refractive indices

NASA Astrophysics Data System (ADS)

Zhang, Ying; Li, Zhengqiang; Sun, Yele; Lv, Yang; Xie, Yisong

2018-04-01

Aerosols have adverse effects on human health and air quality, changing Earth's energy balance and lead to climate change. The components of aerosol are important because of the different spectral characteristics. Based on the low hygroscopic and high scattering properties of organic matter (OM) in fine modal atmospheric aerosols, we develop an inversion algorithm using remote sensing to obtain aerosol components including black carbon (BC), organic matter (OM), ammonium nitrate-like (AN), dust-like (DU) components and aerosol water content (AW). In the algorithm, the microphysical characteristics (i.e. volume distribution and complex refractive index) of particulates are preliminarily separated to fine and coarse modes, and then aerosol components are retrieved using bimodal parameters. We execute the algorithm using remote sensing measurements of sun-sky radiometer at AERONET site (Beijing RADI) in a period from October of 2014 to January of 2015. The results show a reasonable distribution of aerosol components and a good fit for spectral feature calculations. The mean OM mass concentration in atmospheric column is account for 14.93% of the total and 56.34% of dry and fine-mode aerosol, being a fairly good correlation (R = 0.56) with the in situ observations near the surface layer.

Real-Time Nonlocal Means-Based Despeckling.

PubMed

Breivik, Lars Hofsoy; Snare, Sten Roar; Steen, Erik Normann; Solberg, Anne H Schistad

2017-06-01

In this paper, we propose a multiscale nonlocal means-based despeckling method for medical ultrasound. The multiscale approach leads to large computational savings and improves despeckling results over single-scale iterative approaches. We present two variants of the method. The first, denoted multiscale nonlocal means (MNLM), yields uniform robust filtering of speckle both in structured and homogeneous regions. The second, denoted unnormalized MNLM (UMNLM), is more conservative in regions of structure assuring minimal disruption of salient image details. Due to the popularity of anisotropic diffusion-based methods in the despeckling literature, we review the connection between anisotropic diffusion and iterative variants of NLM. These iterative variants in turn relate to our multiscale variant. As part of our evaluation, we conduct a simulation study making use of ground truth phantoms generated from clinical B-mode ultrasound images. We evaluate our method against a set of popular methods from the despeckling literature on both fine and coarse speckle noise. In terms of computational efficiency, our method outperforms the other considered methods. Quantitatively on simulations and on a tissue-mimicking phantom, our method is found to be competitive with the state-of-the-art. On clinical B-mode images, our method is found to effectively smooth speckle while preserving low-contrast and highly localized salient image detail.

Plutonium isotopes offer an alternative approach to establishing chronological profiles in coarse sediments

NASA Astrophysics Data System (ADS)

Pondell, C.; Kuehl, S. A.; Canuel, E. A.

2016-12-01

There are several methodologies used to determine chronologies for sediments deposited within the past 100 years, including 210Pb and 137Cs radioisotopes and organic and inorganic contaminants. These techniques are quite effective in fine sediments, which generally have a high affinity for metals and organic compounds. However, the application of these chronological tools becomes limited in systems where coarse sediments accumulate. Englebright Lake is an impoundment in northern California where sediment accumulation is characterized by a combination of fine and coarse sediments. This combination of sediment grain size complicated chronological analysis using the more traditional 137Cs chronological approach. This study established a chronology of these sediments using 239+240Pu isotopes. While most of the 249+240Pu activity was measured in the fine grain size fraction (<63 microns), up to 25% of the plutonium activity was detected in the coarse size fractions of sediments from Englebright Lake. Profiles of 239+240Pu were similar to available 137Cs profiles, verifying the application of plutonium isotopes for determining sediment chronologies and expanding the established geochronology for Englebright Lake sediments. This study of sediment accumulation in Englebright Lake demonstrates the application of plutonium isotopes in establishing chronologies in coarse sediments and highlights the potential for plutonium to offer new insights into patterns of coarse sediment accumulation.

High-Resolution Coarse-Grained Modeling Using Oriented Coarse-Grained Sites.

PubMed

Haxton, Thomas K

2015-03-10

We introduce a method to bring nearly atomistic resolution to coarse-grained models, and we apply the method to proteins. Using a small number of coarse-grained sites (about one per eight atoms) but assigning an independent three-dimensional orientation to each site, we preferentially integrate out stiff degrees of freedom (bond lengths and angles, as well as dihedral angles in rings) that are accurately approximated by their average values, while retaining soft degrees of freedom (unconstrained dihedral angles) mostly responsible for conformational variability. We demonstrate that our scheme retains nearly atomistic resolution by mapping all experimental protein configurations in the Protein Data Bank onto coarse-grained configurations and then analytically backmapping those configurations back to all-atom configurations. This roundtrip mapping throws away all information associated with the eliminated (stiff) degrees of freedom except for their average values, which we use to construct optimal backmapping functions. Despite the 4:1 reduction in the number of degrees of freedom, we find that heavy atoms move only 0.051 Å on average during the roundtrip mapping, while hydrogens move 0.179 Å on average, an unprecedented combination of efficiency and accuracy among coarse-grained protein models. We discuss the advantages of such a high-resolution model for parametrizing effective interactions and accurately calculating observables through direct or multiscale simulations.

Mechanical behavior of a Y-TZP ceramic for monolithic restorations: effect of grinding and low-temperature aging.

PubMed

Pereira, G K R; Silvestri, T; Camargo, R; Rippe, M P; Amaral, M; Kleverlaan, C J; Valandro, L F

2016-06-01

This study aimed to investigate the effects of grinding with diamond burs and low-temperature aging on the mechanical behavior (biaxial flexural strength and structural reliability), surface topography, and phase transformation of a Y-TZP ceramic for monolithic dental restorations. Disc-shaped specimens (Zirlux FC, Ivoclar Vivadent) were manufactured according to ISO 6872 (2008) and divided in accordance with two factors: "grinding - 3 levels" and "LTD - 2 levels". Grinding was performed using a contra-angle handpiece under constant water-cooling with different grit-sizes (extra-fine and coarse diamond burs). LTD was simulated in an autoclave at 134°C, under a pressure of 2 bar, over a period of 20h. Surface topography analysis showed an increase in roughness based on surface treatment grit-size (Coarse>Xfine>Ctrl), LTD did not influence roughness values. Both grinding and LTD promoted an increase in the amount of m-phase, although different susceptibilities to degradation were observed. According to existing literature the increase of m-phase content is a direct indicative of Y-TZP degradation. Weibull analysis showed an increase in characteristic strength after grinding (Coarse=Xfine>Ctrl), while for LTD, distinct effects were observed (Ctrl

Advanced Shock Position Control for Mode Transition in a Turbine Based Combined Cycle Engine Inlet Model

NASA Technical Reports Server (NTRS)

Csank, Jeffrey T.; Stueber, Thomas J.

2013-01-01

A dual flow-path inlet system is being tested to evaluate methodologies for a Turbine Based Combined Cycle (TBCC) propulsion system to perform a controlled inlet mode transition. Prior to experimental testing, simulation models are used to test, debug, and validate potential control algorithms. One simulation package being used for testing is the High Mach Transient Engine Cycle Code simulation, known as HiTECC. This paper discusses the closed loop control system, which utilizes a shock location sensor to improve inlet performance and operability. Even though the shock location feedback has a coarse resolution, the feedback allows for a reduction in steady state error and, in some cases, better performance than with previous proposed pressure ratio based methods. This paper demonstrates the design and benefit with the implementation of a proportional-integral controller, an H-Infinity based controller, and a disturbance observer based controller.

Global Dynamics of Proteins: Bridging Between Structure and Function

PubMed Central

Bahar, Ivet; Lezon, Timothy R.; Yang, Lee-Wei; Eyal, Eran

2010-01-01

Biomolecular systems possess unique, structure-encoded dynamic properties that underlie their biological functions. Recent studies indicate that these dynamic properties are determined to a large extent by the topology of native contacts. In recent years, elastic network models used in conjunction with normal mode analyses have proven to be useful for elucidating the collective dynamics intrinsically accessible under native state conditions, including in particular the global modes of motions that are robustly defined by the overall architecture. With increasing availability of structural data for well-studied proteins in different forms (liganded, complexed, or free), there is increasing evidence in support of the correspondence between functional changes in structures observed in experiments and the global motions predicted by these coarse-grained analyses. These observed correlations suggest that computational methods may be advantageously employed for assessing functional changes in structure and allosteric mechanisms intrinsically favored by the native fold. PMID:20192781

Global dynamics of proteins: bridging between structure and function.

PubMed

Bahar, Ivet; Lezon, Timothy R; Yang, Lee-Wei; Eyal, Eran

2010-01-01

Biomolecular systems possess unique, structure-encoded dynamic properties that underlie their biological functions. Recent studies indicate that these dynamic properties are determined to a large extent by the topology of native contacts. In recent years, elastic network models used in conjunction with normal mode analyses have proven to be useful for elucidating the collective dynamics intrinsically accessible under native state conditions, including in particular the global modes of motions that are robustly defined by the overall architecture. With increasing availability of structural data for well-studied proteins in different forms (liganded, complexed, or free), there is increasing evidence in support of the correspondence between functional changes in structures observed in experiments and the global motions predicted by these coarse-grained analyses. These observed correlations suggest that computational methods may be advantageously employed for assessing functional changes in structure and allosteric mechanisms intrinsically favored by the native fold.

Power-Aware Compiler Controllable Chip Multiprocessor

NASA Astrophysics Data System (ADS)

Shikano, Hiroaki; Shirako, Jun; Wada, Yasutaka; Kimura, Keiji; Kasahara, Hironori

A power-aware compiler controllable chip multiprocessor (CMP) is presented and its performance and power consumption are evaluated with the optimally scheduled advanced multiprocessor (OSCAR) parallelizing compiler. The CMP is equipped with power control registers that change clock frequency and power supply voltage to functional units including processor cores, memories, and an interconnection network. The OSCAR compiler carries out coarse-grain task parallelization of programs and reduces power consumption using architectural power control support and the compiler's power saving scheme. The performance evaluation shows that MPEG-2 encoding on the proposed CMP with four CPUs results in 82.6% power reduction in real-time execution mode with a deadline constraint on its sequential execution time. Furthermore, MP3 encoding on a heterogeneous CMP with four CPUs and four accelerators results in 53.9% power reduction at 21.1-fold speed-up in performance against its sequential execution in the fastest execution mode.

Volcanic ash observed over Poland, April 2010

NASA Astrophysics Data System (ADS)

Pietruczuk, Aleksander; Krzyścin, Janusz; Jarosławski, Janusz; Podgórski, Jerzy

2010-05-01

We present analyses of the results of the ground-based measurements of the aerosols at Belsk - Central Geophysical Observatory Institute of Geophysics Polish Academy of Sciences (IGF PAS) after eruption of Eyjafjallajokull volcano. The lidar and Sun-photometric result are compared to model simulations by the Norwegian Institute of Meteorology (NIM), Oslo, Norway. Our measurements show presence of aerosol layers in free troposphere mainly 16 -17 April and 23 April when presence of ash cloud is predicted by the model. However, contribution of that layers to aerosol optical depth (AOD) is rather weak. Variability of AOD during measurements period is small and does not exceed overall mean for April. Aerosol microphysical properties, like size distribution, measured after eruption is typical for advection of clear air form northern Europe. Small fine mode is observed during whole period and only 16 and 17 Aril small increase of coarse mode was found.

Large-amplitude nonlinear normal modes of the discrete sine lattices.

PubMed

Smirnov, Valeri V; Manevitch, Leonid I

2017-02-01

We present an analytical description of the large-amplitude stationary oscillations of the finite discrete system of harmonically coupled pendulums without any restrictions on their amplitudes (excluding a vicinity of π). Although this model has numerous applications in different fields of physics, it was studied earlier in the infinite limit only. The discrete chain with a finite length can be considered as a well analytical analog of the coarse-grain models of flexible polymers in the molecular dynamics simulations. The developed approach allows to find the dispersion relations for arbitrary amplitudes of the nonlinear normal modes. We emphasize that the long-wavelength approximation, which is described by well-known sine-Gordon equation, leads to an inadequate zone structure for the amplitudes of about π/2 even if the chain is long enough. An extremely complex zone structure at the large amplitudes corresponds to multiple resonances between nonlinear normal modes even with strongly different wave numbers. Due to the complexity of the dispersion relations the modes with shorter wavelengths may have smaller frequencies. The stability of the nonlinear normal modes under condition of the resonant interaction are discussed. It is shown that this interaction of the modes in the vicinity of the long wavelength edge of the spectrum leads to the localization of the oscillations. The thresholds of instability and localization are determined explicitly. The numerical simulation of the dynamics of a finite-length chain is in a good agreement with obtained analytical predictions.

Predictors of coarse particulate matter and associated endotoxin concentrations in residential environments

NASA Astrophysics Data System (ADS)

Bari, Md. Aynul; MacNeill, Morgan; Kindzierski, Warren B.; Wallace, Lance; Héroux, Marie-Ève; Wheeler, Amanda J.

2014-08-01

Exposure to coarse particulate matter (PM), i.e., particles with an aerodynamic diameter between 2.5 and 10 μm (PM10-2.5), is of increasing interest due to the potential for health effects including asthma, allergy and respiratory symptoms. Limited information is available on indoor and outdoor coarse PM and associated endotoxin exposures. Seven consecutive 24-h samples of indoor and outdoor coarse PM were collected during winter and summer 2010 using Harvard Coarse Impactors in a total of 74 Edmonton homes where no reported smoking took place. Coarse PM filters were subsequently analyzed for endotoxin content. Data were also collected on indoor and outdoor temperature, relative humidity, air exchange rate, housing characteristics and occupants' activities. During winter, outdoor concentrations of coarse PM (median = 6.7 μg/m3, interquartile range, IQR = 3.4-12 μg/m3) were found to be higher than indoor concentrations (median 3.4 μg/m3, IQR = 1.6-5.7 μg/m3); while summer levels of indoor and outdoor concentrations were similar (median 4.5 μg/m3, IQR = 2.3-6.8 μg/m3, and median 4.7 μg/m3, IQR = 2.1-7.9 μg/m3, respectively). Similar predictors were identified for indoor coarse PM in both seasons and included corresponding outdoor coarse PM concentrations, whether vacuuming, sweeping or dusting was performed during the sampling period, and number of occupants in the home. Winter indoor coarse PM predictors also included the number of dogs and indoor endotoxin concentrations. Summer median endotoxin concentrations (indoor: 0.41 EU/m3, outdoor: 0.64 EU/m3) were 4-fold higher than winter concentrations (indoor: 0.12 EU/m3, outdoor: 0.16 EU/m3). Other than outdoor endotoxin concentrations, indoor endotoxin concentration predictors for both seasons were different. Winter endotoxin predictors also included presence of furry pets and whether the vacuum had a high efficiency particulate air (HEPA) filter. Summer endotoxin predictors were problems with mice in the previous 12 months and mean indoor relative humidity levels.

Effects of debris-flow composition on runout and erosion

NASA Astrophysics Data System (ADS)

Haas, T. D.; Kleinhans, M. G.

2016-12-01

Predicting debris-flow runout is of major importance for hazard mitigation. Apart from topography and volume, runout depends on debris-flow composition (i.e., particle-size distribution and water content), but how is poorly understood. Moreover, debris flows can grow greatly in size by entrainment of bed material, enhancing their volume and thereby runout and hazardous impact. Debris-flow erosion rates also depend on debris-flow composition, but the relation between the two is largely unexplored. Composition thus strongly affects the dynamics of debris flows. We experimentally investigate the effects of composition on debris-flow runout and erosion. We find a clear optimum in the relations of runout with coarse-material fraction and clay fraction. Increasing coarse material concentration leads to larger runout. However, excess coarse material results in a large accumulation of coarse debris at the flow front and enhances diffusivity, increasing frontal friction and decreasing runout. Increasing clay content initially enhances runout, but too much clay leads to very viscous flows, reducing runout. We further find that debris-flow runout depends at least as much on composition as on topography. In general, erosion depth increases with basal shear stress in our experiments, while there is no correlation with grain collisional stress. There are substantial differences in the scour caused by different types of debris flows. Mean and maximum erosion depths generally become larger with increasing water fraction and grain size and decrease with increasing clay content. However, the erodibility of the very coarse-grained experimental debris flows is unrelated to basal shear stress. This relates to the relatively large influence of grain-collisional stress to the total bed stress in these flows (30-50%). The relative effect of grain-collisional stress is low in the other experimental debris flows (<5%) causing erosion to be largely controlled by basal shear stress. These results show that the erosive behaviour of debris flows may change from basal-shear stress dominated to grain-collisional stress dominated in increasingly coarse-grained debris flows. In short, this study improves our understanding of the effects of debris-flow composition on runout and erosion.

Coarse-grained models using local-density potentials optimized with the relative entropy: Application to implicit solvation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sanyal, Tanmoy; Shell, M. Scott, E-mail: shell@engineering.ucsb.edu

Bottom-up multiscale techniques are frequently used to develop coarse-grained (CG) models for simulations at extended length and time scales but are often limited by a compromise between computational efficiency and accuracy. The conventional approach to CG nonbonded interactions uses pair potentials which, while computationally efficient, can neglect the inherently multibody contributions of the local environment of a site to its energy, due to degrees of freedom that were coarse-grained out. This effect often causes the CG potential to depend strongly on the overall system density, composition, or other properties, which limits its transferability to states other than the one atmore » which it was parameterized. Here, we propose to incorporate multibody effects into CG potentials through additional nonbonded terms, beyond pair interactions, that depend in a mean-field manner on local densities of different atomic species. This approach is analogous to embedded atom and bond-order models that seek to capture multibody electronic effects in metallic systems. We show that the relative entropy coarse-graining framework offers a systematic route to parameterizing such local density potentials. We then characterize this approach in the development of implicit solvation strategies for interactions between model hydrophobes in an aqueous environment.« less

Common factors drive disease and coarse woody debris dynamics in forests impacted by sudden oak death

Treesearch

Richard C. Cobb; Maggie N. Chan; Ross K. Meentemeyer; David M. Rizzo

2011-01-01

Disease ecology has made important steps in describing how epidemiological processes control the impact of pathogens on populations and communities but fewer field or theoretical studies address disease effects at the ecosystem level. We demonstrate that the same epidemiological mechanisms drive disease intensity and coarse woody debris (CWD) dynamics...

Diet of southern toads (Bufo terrestris) in loblolly pine (Pinus taeda) stands subject to coarse woody debris manipulations

Treesearch

Kurtis R. Moseley; Steven B. Castleberry; James L. Hanula; W. Mark Ford

2004-01-01

In the southeastern United States, coarse woody debris (CWD) typically harbors high densities of invertebrates. However, its importance as a foraging substrate for southeastern amphibians is relatively unknown. We examined effects of CWD manipulations on diet composition of southern toads (Bufo tmrestns) in upland loblolly pine (Pinus taeda) stands...

Experimental evaluation of several key factors affecting root biomass estimation by 1500 MHz ground penetrating radar

Treesearch

John Bain; Frank Day; John Butnor

2017-01-01

Accurate quantification of coarse roots without disturbance represents a gap in our understanding of belowground ecology. Ground penetrating radar (GPR) has shown significant promise for coarse root detection and measurement, however root orientation relative to scanning transect direction, the difficulty identifying dead root mass, and the effects of root shadowing...

Remote Sensing of Aerosol using MODIS, MODIS+CALIPSO and with the AEROSAT Concept

NASA Technical Reports Server (NTRS)

Kaufman, Yoram J.

2002-01-01

In the talk I shall review the MODIS use of spectral information to derive aerosol size distribution, optical thickness and reflected spectral flux. The accuracy and validation of the MODIS products will be discussed. A few applications will be shown: inversion of combined MODIS+lidar data, aerosol Anthropogenic direct forcing, and dust deposition in the Atlantic Ocean. I shall also discuss the aerosol information that MODIS is measuring: real ref index, single scattering albedo, size of fine and coarse modes, and describe the AEROSAT concept that uses bright desert and glint to derive aerosol absorption.

Effect of brewing technique and particle size of the ground coffee on sensory profiling of brewed Dampit robusta coffee

NASA Astrophysics Data System (ADS)

Fibrianto, K.; Febryana, Y. R.; Wulandari, E. S.

2018-03-01

This study aimed to assess the effect of different brewing techniques with the use of appropriate particle size standard of Apresiocoffee cafe (Category 1) compared to the difference brewing techniques with the use of the same particle size (coarse) (Category 2) of the sensory attributes Dampit robusta coffee. Rate-All-That-Apply (RATA) method was applied in this study, and the data was analysed by ANOVA General Linier Model (GLM) on Minitab-16. The influence of brewing techniques (tubruk, French-press, drips, syphon) and type of particle size ground coffee (fine, medium, coarse) were sensorially observed. The result showed that only two attributes, including bitter taste, and astringent/rough-mouth-feel were affected by brewing techniques (p-value <0.05) as observed for brewed coarse coffee powder.

Primary and Aggregate Size Distributions of PM in Tail Pipe Emissions form Diesel Engines

NASA Astrophysics Data System (ADS)

Arai, Masataka; Amagai, Kenji; Nakaji, Takayuki; Hayashi, Shinji

Particulate matter (PM) emission exhausted from diesel engine should be reduced to keep the clean air environment. PM emission was considered that it consisted of coarse and aggregate particles, and nuclei-mode particles of which diameter was less than 50nm. However the detail characteristics about these particles of the PM were still unknown and they were needed for more physically accurate measurement and more effective reduction of exhaust PM emission. In this study, the size distributions of solid particles in PM emission were reported. PMs in the tail-pipe emission were sampled from three type diesel engines. Sampled PM was chemically treated to separate the solid carbon fraction from other fractions such as soluble organic fraction (SOF). The electron microscopic and optical-manual size measurement procedures were used to determine the size distribution of primary particles those were formed through coagulation process from nuclei-mode particles and consisted in aggregate particles. The centrifugal sedimentation method was applied to measure the Stokes diameter of dry-soot. Aerodynamic diameters of nano and aggregate particles were measured with scanning mobility particle sizer (SMPS). The peak aggregate diameters detected by SMPS were fallen in the same size regime as the Stokes diameter of dry-soot. Both of primary and Stokes diameters of dry-soot decreased with increases of engine speed and excess air ratio. Also, the effects of fuel properties and engine types on primary and aggregate particle diameters were discussed.

Structural properties of thiophenes investigated with simulations of a coarse-grained model

NASA Astrophysics Data System (ADS)

Luettmer-Strathmann, Jutta; Almutairi, Amani

Thiophenes have important applications in organic electronics, energy conversion, and storage. The interfacial layer of an organic semiconductor in contact with a metal electrode has important effects on the performance of thin-film devices. However, the structure of this layer is not easy to model. In recent work, we developed a coarse-grained model for alpha-oligothiophenes in the bulk and near gold surfaces. We describe the molecules as linear chains of bonded, discotic particles with Gay-Berne potential interactions between non-bonded ellipsoids. In this work, we investigate structural properties of thiophenes with simulations of our coarse-grained model.

Effect of heterogeneity and anisotropy related to the construction method on transfer processes in waste rock piles.

PubMed

Lahmira, Belkacem; Lefebvre, René; Aubertin, Michel; Bussière, Bruno

2016-01-01

Waste rock piles producing acid mine drainage (AMD) are partially saturated systems involving multiphase (gas and liquid) flow and coupled transfer processes. Their internal structure and heterogeneous properties are inherited from their wide-ranging material grain sizes, their modes of deposition, and the underlying topography. This paper aims at assessing the effect of physical heterogeneity and anisotropy of waste rock piles on the physical processes involved in the generation of AMD. Generic waste rock pile conditions were represented with the numerical simulator TOUGH AMD based on those found at the Doyon mine waste rock pile (Canada). Models included four randomly distributed material types (coarse, intermediate, fine and very fine-grained). The term "randomly" as used in this study means that the vertical profile and spatial distribution of materials in waste rock piles (internal structure) defy stratigraphy principles applicable to natural sediments (superposition and continuity). The materials have different permeability and capillary properties, covering the typical range of materials found in waste rock piles. Anisotropy with a larger horizontal than vertical permeability was used to represent the effect of pile construction by benches, while the construction by end-dumping was presumed to induce a higher vertical than horizontal permeability. Results show that infiltrated precipitation preferentially flows in fine-grained materials, which remain almost saturated, whereas gas flows preferentially through the most permeable coarse materials, which have higher volumetric gas saturation. Anisotropy, which depends on pile construction methods, often controls global gas flow paths. Construction by benches favours lateral air entry close to the pile slope, whereas end-dumping leads to air entry from the surface to the interior of the pile by secondary gas convection cells. These results can be useful to construct and rehabilitate waste rock piles to minimize AMD, while controlling gas flow and oxygen supply. Copyright © 2015 Elsevier B.V. All rights reserved.

The effect of debris-flow composition on runout distance

NASA Astrophysics Data System (ADS)

de Haas, Tjalling; Braat, Lisanne; Leuven, Jasper; Lokhorst, Ivar; Kleinhans, Maarten

2015-04-01

Estimating runout distance is of major importance for the assessment and mitigation of debris-flow hazards. Debris-flow runout distance depends on debris-flow composition and topography, but state-of-the-art runout prediction methods are mainly based on topographical parameters and debris-flow volume, while composition is generally neglected or incorporated in empirical constants. Here we experimentally investigated the effect of debris-flow composition and topography on runout distance. We created the first small-scale experimental debris flows with self-formed levees, distinct lobes and morphology and texture accurately resembling natural debris flows. In general, the effect of debris-flow composition on runout distance was larger than the effect of topography. Enhancing channel slope and width, outflow plain slope, debris-flow size and water fraction leads to an increase in runout distance. However, runout distance shows an optimum relation with coarse-material and clay fraction. An increase in coarse-material fraction leads to larger runout distances by increased grain collisional forces and more effective levee formation, but too much coarse debris causes a large accumulation of coarse debris at the flow front, enhancing friction and decreasing runout. An increase in clay fraction initially enlarges the volume and viscosity of the interstitial fluid, liquefying the flow and enhancing runout, while a further increase leads to very viscous flows with high yield strength, reducing runout. These results highlight the importance and further need of research on the relation between debris-flow composition and runout distance. Our experiments further provide valuable insight on the effects of debris-flow composition on depositional mechanisms and deposit morphology.

Processing, Structural Characterization and Comparative Studies on Uniaxial Tensile Properties of a New Type of Porous Twisted Wire Material

PubMed Central

Wu, Fei; Zhou, Zhaoyao; Duan, Liuyang; Xiao, Zhiyu

2015-01-01

A self-developed rotary multi-cutter device cuts stainless steel wire ropes into segments to fabricate twisted wires. Stainless steel porous twisted wire materials (PTWMs) with a spatial composite intertexture structure are produced by the compaction and subsequent vacuum solid-phase sintering of twisted wires. The stainless steel PTWMs show two types of typical uniaxial tensile failure modes, i.e., a 45° angle fracture mode and an auxetic failure mode (the PTWMs expand along the direction perpendicular to the tension). The effects of the sintering parameters, porosities, wire diameters, and sampling direction on the tensile properties of the PTWMs are carefully investigated. By increasing the sintering temperature from 1130 °C to 1330 °C, the tensile strength of the PTWMs with 70% target porosity increased from 7.7 MPa to 28.6 MPa and the total failure goes down to 50%. When increasing the sintering time from 90 min to 150 min, the tensile strength increases from 12.4 MPa to 19.1 MPa and the total failure elongation drops to 78.6%. The tensile strength of the PTWMs increases from 28.9 MPa to 112.7 MPa with decreasing porosity from 69.5% to 46.0%, and the total failure elongation also increases from 14.8% to 40.7%. The tensile strength and the failure strain of the PTWMs with fine wires are higher than those of the PTWMs with coarse wires under the same porosity. Sampling direction has a small influence on the tensile properties of the PTWMs. PMID:28793526

Effect of Stress Triaxiality on the Flow and Fracture of Mg Alloy AZ31

NASA Astrophysics Data System (ADS)

Kondori, Babak; Benzerga, A. Amine

2014-07-01

The microscopic damage mechanisms operating in a hot-rolled magnesium alloy AZ31B are investigated under both uniaxial and controlled triaxial loadings. Their connection to macroscopic fracture strains and fracture mode (normal vs shear) is elucidated using postmortem fractography, interrupted tests, and microscopic analysis. The fracture locus (strain-to-failure vs stress triaxiality) exhibits a maximum at moderate triaxiality, and the strain-to-failure is found to be greater in notched specimens than in initially smooth ones. A transition from twinning-induced fracture under uniaxial loading to microvoid coalescence fracture under triaxial loading is evidenced. It is argued that this transition accounts in part for the observed greater ductility in notched bars. The evolution of plastic anisotropy with stress triaxiality is also investigated. It is inferred that anisotropic plasticity at a macroscopic scale suffices to account for the observed transition in the fracture mode from flat (triaxial loading) to shear-like (uniaxial loading). Damage is found to initiate at second-phase particles and deformation twins. Fracture surfaces of broken specimens exhibit granular morphology, coarse splits, twin-sized crack traces, as well as shallow and deep dimples, in proportions that depend on the overall stress triaxiality and fracture mode. An important finding is that AZ31B has a greater tolerance to ductile damage accumulation than has been believed thus far, based on the fracture behavior in uniaxial specimens. Another finding, common to both tension and compression, is the increase in volumetric strain, the microscopic origins of which remain to be elucidated.

Processing, Structural Characterization and Comparative Studies on Uniaxial Tensile Properties of a New Type of Porous Twisted Wire Material.

PubMed

Wu, Fei; Zhou, Zhaoyao; Duan, Liuyang; Xiao, Zhiyu

2015-08-27

A self-developed rotary multi-cutter device cuts stainless steel wire ropes into segments to fabricate twisted wires. Stainless steel porous twisted wire materials (PTWMs) with a spatial composite intertexture structure are produced by the compaction and subsequent vacuum solid-phase sintering of twisted wires. The stainless steel PTWMs show two types of typical uniaxial tensile failure modes, i.e. , a 45° angle fracture mode and an auxetic failure mode (the PTWMs expand along the direction perpendicular to the tension). The effects of the sintering parameters, porosities, wire diameters, and sampling direction on the tensile properties of the PTWMs are carefully investigated. By increasing the sintering temperature from 1130 °C to 1330 °C, the tensile strength of the PTWMs with 70% target porosity increased from 7.7 MPa to 28.6 MPa and the total failure goes down to 50%. When increasing the sintering time from 90 min to 150 min, the tensile strength increases from 12.4 MPa to 19.1 MPa and the total failure elongation drops to 78.6%. The tensile strength of the PTWMs increases from 28.9 MPa to 112.7 MPa with decreasing porosity from 69.5% to 46.0%, and the total failure elongation also increases from 14.8% to 40.7%. The tensile strength and the failure strain of the PTWMs with fine wires are higher than those of the PTWMs with coarse wires under the same porosity. Sampling direction has a small influence on the tensile properties of the PTWMs.

Coarse-grained incompressible magnetohydrodynamics: Analyzing the turbulent cascades

DOE PAGES

Aluie, Hussein

2017-02-21

Here, we formulate a coarse-graining approach to the dynamics of magnetohydrodynamic (MHD) fluids at a continuum of length-scales. In this methodology, effective equations are derived for the observable velocity and magnetic fields spatially-averaged at an arbitrary scale of resolution. The microscopic equations for the bare velocity and magnetic fields are renormalized by coarse-graining to yield macroscopic effective equations that contain both a subscale stress and a subscale electromotive force (EMF) generated by nonlinear interaction of eliminated fields and plasma motions. At large coarse-graining length-scales, the direct dissipation of invariants by microscopic mechanisms (such as molecular viscosity and Spitzer resistivity) ismore » shown to be negligible. The balance at large scales is dominated instead by the subscale nonlinear terms, which can transfer invariants across scales, and are interpreted in terms of work concepts for energy and in terms of topological flux-linkage for the two helicities. An important application of this approach is to MHD turbulence, where the coarse-graining length ℓ lies in the inertial cascade range. We show that in the case of sufficiently rough velocity and/or magnetic fields, the nonlinear inter-scale transfer need not vanish and can persist to arbitrarily small scales. Although closed expressions are not available for subscale stress and subscale EMF, we derive rigorous upper bounds on the effective dissipation they produce in terms of scaling exponents of the velocity and magnetic fields. These bounds provide exact constraints on phenomenological theories of MHD turbulence in order to allow the nonlinear cascade of energy and cross-helicity. On the other hand, we show that the forward cascade of magnetic helicity to asymptotically small scales is impossible unless 3rd-order moments of either velocity or magnetic field become infinite.« less

A two-level approach to large mixed-integer programs with application to cogeneration in energy-efficient buildings

DOE PAGES

Lin, Fu; Leyffer, Sven; Munson, Todd

2016-04-12

We study a two-stage mixed-integer linear program (MILP) with more than 1 million binary variables in the second stage. We develop a two-level approach by constructing a semi-coarse model that coarsens with respect to variables and a coarse model that coarsens with respect to both variables and constraints. We coarsen binary variables by selecting a small number of prespecified on/off profiles. We aggregate constraints by partitioning them into groups and taking convex combination over each group. With an appropriate choice of coarsened profiles, the semi-coarse model is guaranteed to find a feasible solution of the original problem and hence providesmore » an upper bound on the optimal solution. We show that solving a sequence of coarse models converges to the same upper bound with proven finite steps. This is achieved by adding violated constraints to coarse models until all constraints in the semi-coarse model are satisfied. We demonstrate the effectiveness of our approach in cogeneration for buildings. Here, the coarsened models allow us to obtain good approximate solutions at a fraction of the time required by solving the original problem. Extensive numerical experiments show that the two-level approach scales to large problems that are beyond the capacity of state-of-the-art commercial MILP solvers.« less

A two-level approach to large mixed-integer programs with application to cogeneration in energy-efficient buildings

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lin, Fu; Leyffer, Sven; Munson, Todd

We study a two-stage mixed-integer linear program (MILP) with more than 1 million binary variables in the second stage. We develop a two-level approach by constructing a semi-coarse model that coarsens with respect to variables and a coarse model that coarsens with respect to both variables and constraints. We coarsen binary variables by selecting a small number of prespecified on/off profiles. We aggregate constraints by partitioning them into groups and taking convex combination over each group. With an appropriate choice of coarsened profiles, the semi-coarse model is guaranteed to find a feasible solution of the original problem and hence providesmore » an upper bound on the optimal solution. We show that solving a sequence of coarse models converges to the same upper bound with proven finite steps. This is achieved by adding violated constraints to coarse models until all constraints in the semi-coarse model are satisfied. We demonstrate the effectiveness of our approach in cogeneration for buildings. Here, the coarsened models allow us to obtain good approximate solutions at a fraction of the time required by solving the original problem. Extensive numerical experiments show that the two-level approach scales to large problems that are beyond the capacity of state-of-the-art commercial MILP solvers.« less

40 CFR Table F-5 to Subpart F of... - Estimated Mass Concentration Measurement of PM2.5 for Idealized “Typical” Coarse Aerosol Size...

Code of Federal Regulations, 2011 CFR

2011-07-01

... 40 Protection of Environment 5 2011-07-01 2011-07-01 false Estimated Mass Concentration... 53—Estimated Mass Concentration Measurement of PM2.5 for Idealized “Typical” Coarse Aerosol Size Distribution Particle Aerodynamic Diameter (µm) Test Sampler Fractional Sampling Effectiveness Interval Mass...

40 CFR Table F-5 to Subpart F of... - Estimated Mass Concentration Measurement of PM2.5 for Idealized “Typical” Coarse Aerosol Size...

Code of Federal Regulations, 2010 CFR

2010-07-01

... 40 Protection of Environment 5 2010-07-01 2010-07-01 false Estimated Mass Concentration... 53—Estimated Mass Concentration Measurement of PM2.5 for Idealized “Typical” Coarse Aerosol Size Distribution Particle Aerodynamic Diameter (µm) Test Sampler Fractional Sampling Effectiveness Interval Mass...

Prescribed fire effects on field-derived and simulated forest carbon stocks over time

Treesearch

Nicole M. Vaillant; Alicia L. Reiner; Erin K. Noonan-Wright

2013-01-01

To better understand the impact of prescribed fire on carbon stocks, we quantified aboveground and belowground carbon stocks within five pools (live trees and coarse roots, dead trees and coarse roots, live understory vegetation, down woody debris, and litter and duff) and potential carbon emissions from a simulated wildfire before and up to 8 years after prescribed...

Effects of Oil Palm Shell Coarse Aggregate Species on High Strength Lightweight Concrete

PubMed Central

Yew, Ming Kun; Bin Mahmud, Hilmi; Ang, Bee Chin; Yew, Ming Chian

2014-01-01

The objective of this study was to investigate the effects of different species of oil palm shell (OPS) coarse aggregates on the properties of high strength lightweight concrete (HSLWC). Original and crushed OPS coarse aggregates of different species and age categories were investigated in this study. The research focused on two OPS species (dura and tenera), in which the coarse aggregates were taken from oil palm trees of the following age categories (3–5, 6–9, and 10–15 years old). The results showed that the workability and dry density of the oil palm shell concrete (OPSC) increase with an increase in age category of OPS species. The compressive strength of specimen CD3 increases significantly compared to specimen CT3 by 21.8%. The maximum achievable 28-day and 90-day compressive strength is 54 and 56 MPa, respectively, which is within the range for 10–15-year-old crushed dura OPS. The water absorption was determined to be within the range for good concrete for the different species of OPSC. In addition, the ultrasonic pulse velocity (UPV) results showed that the OPS HSLWC attain good condition at the age of 3 days. PMID:24982946

Capillary wave Hamiltonian for the Landau-Ginzburg-Wilson density functional

NASA Astrophysics Data System (ADS)

Chacón, Enrique; Tarazona, Pedro

2016-06-01

We study the link between the density functional (DF) formalism and the capillary wave theory (CWT) for liquid surfaces, focused on the Landau-Ginzburg-Wilson (LGW) model, or square gradient DF expansion, with a symmetric double parabola free energy, which has been extensively used in theoretical studies of this problem. We show the equivalence between the non-local DF results of Parry and coworkers and the direct evaluation of the mean square fluctuations of the intrinsic surface, as is done in the intrinsic sampling method for computer simulations. The definition of effective wave-vector dependent surface tensions is reviewed and we obtain new proposals for the LGW model. The surface weight proposed by Blokhuis and the surface mode analysis proposed by Stecki provide consistent and optimal effective definitions for the extended CWT Hamiltonian associated to the DF model. A non-local, or coarse-grained, definition of the intrinsic surface provides the missing element to get the mesoscopic surface Hamiltonian from the molecular DF description, as had been proposed a long time ago by Dietrich and coworkers.

Capillary wave Hamiltonian for the Landau-Ginzburg-Wilson density functional.

PubMed

Chacón, Enrique; Tarazona, Pedro

2016-06-22

We study the link between the density functional (DF) formalism and the capillary wave theory (CWT) for liquid surfaces, focused on the Landau-Ginzburg-Wilson (LGW) model, or square gradient DF expansion, with a symmetric double parabola free energy, which has been extensively used in theoretical studies of this problem. We show the equivalence between the non-local DF results of Parry and coworkers and the direct evaluation of the mean square fluctuations of the intrinsic surface, as is done in the intrinsic sampling method for computer simulations. The definition of effective wave-vector dependent surface tensions is reviewed and we obtain new proposals for the LGW model. The surface weight proposed by Blokhuis and the surface mode analysis proposed by Stecki provide consistent and optimal effective definitions for the extended CWT Hamiltonian associated to the DF model. A non-local, or coarse-grained, definition of the intrinsic surface provides the missing element to get the mesoscopic surface Hamiltonian from the molecular DF description, as had been proposed a long time ago by Dietrich and coworkers.

Strengthening of Aluminum Alloy 2219 by Thermo-mechanical Treatment

NASA Astrophysics Data System (ADS)

Li, Xifeng; Lei, Kun; Song, Peng; Liu, Xinqin; Zhang, Fei; Li, Jianfei; Chen, Jun

2015-10-01

Strengthening of aluminum alloy 2219 by thermo-mechanical treatment has been compared with artificial aging. Three simple deformation modes including pre-stretching, compression, and rolling have been used in thermo-mechanical treatment. The tensile strength, elongation, fracture feature, and precipitated phase have been investigated. The results show that the strengthening effect of thermo-mechanical treatment is better than the one of artificial aging. Especially, the yield strength significantly increases with a small decrease of elongation. When the specimen is pre-stretched to 8.0%, the yield strength reaches 385.0 MPa and increases by 22.2% in comparison to the one obtained in aging condition. The maximum tensile strength of 472.4 MPa is achieved with 4.0% thickness reduction by compression. The fracture morphology reveals locally ductile and brittle failure mechanism, while the coarse second-phase particles distribute on the fracture surface. The intermediate phases θ″ or θ' orthogonally precipitate in the matrix after thermo-mechanical treatment. As compared to artificial aging, the cold plastic deformation increases distribution homogeneity and the volume fraction of θ'' or θ' precipitates. These result in a better strengthening effect.

The influence of super-horizon scales on cosmological observables generated during inflation

NASA Astrophysics Data System (ADS)

Matarrese, Sabino; Musso, Marcello A.; Riotto, Antonio

2004-05-01

Using the techniques of out-of-equilibrium field theory, we study the influence on properties of cosmological perturbations generated during inflation on observable scales coming from fluctuations corresponding today to scales much bigger than the present Hubble radius. We write the effective action for the coarse grained inflaton perturbations, integrating out the sub-horizon modes, which manifest themselves as a coloured noise and lead to memory effects. Using the simple model of a scalar field with cubic self-interactions evolving in a fixed de Sitter background, we evaluate the two- and three-point correlation function on observable scales. Our basic procedure shows that perturbations do preserve some memory of the super-horizon scale dynamics, in the form of scale dependent imprints in the statistical moments. In particular, we find a blue tilt of the power spectrum on large scales, in agreement with the recent results of the WMAP collaboration which show a suppression of the lower multipoles in the cosmic microwave background anisotropies, and a substantial enhancement of the intrinsic non-Gaussianity on large scales.

Coarse-grained simulations of cis- and trans-polybutadiene: A bottom-up approach

NASA Astrophysics Data System (ADS)

Lemarchand, Claire A.; Couty, Marc; Rousseau, Bernard

2017-02-01

We apply the dissipative particle dynamics strategy proposed by Hijón et al. [Faraday Discuss. 144, 301-322 (2010)] and based on an exact derivation of the generalized Langevin equation to cis- and trans-1,4-polybutadiene. We prove that it is able to reproduce not only the structural but also the dynamical properties of these polymers without any fitting parameter. A systematic study of the effect of the level of coarse-graining is done on cis-1,4-polybutadiene. We show that as the level of coarse-graining increases, the dynamical properties are better and better reproduced while the structural properties deviate more and more from those calculated in molecular dynamics (MD) simulations. We suggest two reasons for this behavior: the Markovian approximation is better satisfied as the level of coarse-graining increases, while the pair-wise approximation neglects important contributions due to the relative orientation of the beads at large levels of coarse-graining. Finally, we highlight a possible limit of the Markovian approximation: the fact that in constrained simulations, in which the centers-of-mass of the beads are kept constant, the bead rotational dynamics become extremely slow.

Mechanical Properties of Lightweight Concrete Using Recycled Cement-Sand Brick as Coarse Aggregates Replacement

NASA Astrophysics Data System (ADS)

Joohari, Ilya; Farhani Ishak, Nor; Amin, Norliyati Mohd

2018-03-01

This paper presents the result of replacing natural course aggregate with recycled cement-sand brick (CSB) towards the mechanical properties of concrete. Natural aggregates were used in this study as a control sample to compare with recycled coarse aggregates. This study was also carried to determine the optimum proportion of coarse aggregates replacement to produce lightweight concrete. Besides, this study was conducted to observe the crack and its behaviour development during the mechanical testing. Through this study, four types of concrete mixed were prepared, which were the control sample, 25%, 50% and 75% replacement of CSB. The test conducted to determine the effectiveness of recycled CSB as coarse aggregates replacement in this study were slump test, density measurement, compression test, and flexural test and. The strength of concrete was tested at 7 days and 28 days of curing. From the results obtained, the optimum proportion which produced the highest strength is 25% replacement of recycled CSB. The compressive and flexural strength has decreased by 10%-12% and 4%-34% respectively compared to the control sample. The presence of recycled coarse aggregates in sample has decreased the density of concrete by 0.8%-3% compared to the control sample.

Effects of debris flow composition on runout, depositional mechanisms, and deposit morphology in laboratory experiments

NASA Astrophysics Data System (ADS)

Haas, Tjalling; Braat, Lisanne; Leuven, Jasper R. F. W.; Lokhorst, Ivar R.; Kleinhans, Maarten G.

2015-09-01

Predicting debris flow runout is of major importance for hazard mitigation. Apart from topography and volume, runout distance and area depends on debris flow composition and rheology, but how is poorly understood. We experimentally investigated effects of composition on debris flow runout, depositional mechanisms, and deposit geometry. The small-scale experimental debris flows were largely similar to natural debris flows in terms of flow behavior, deposit morphology, grain size sorting, channel width-depth ratio, and runout. Deposit geometry (lobe thickness and width) in our experimental debris flows is largely determined by composition, while the effects of initial conditions of topography (i.e., outflow plain slope and channel slope and width) and volume are negligible. We find a clear optimum in the relations of runout with coarse-material fraction and clay fraction. Increasing coarse-material concentration leads to larger runout. However, excess coarse material results in a large accumulation of coarse debris at the flow front and enhances diffusivity, increasing frontal friction and decreasing runout. Increasing clay content initially enhances runout, but too much clay leads to very viscous flows, reducing runout. Runout increases with channel slope and width, outflow plain slope, debris flow volume, and water fraction. These results imply that debris flow runout depends at least as much on composition as on topography. This study improves understanding of the effects of debris flow composition on runout and may aid future debris flow hazard assessments.

Indoor/outdoor relationships of quasi-ultrafine, accumulation and coarse mode particles in school environments in Barcelona: chemical composition and sources

NASA Astrophysics Data System (ADS)

Viana, M.; Rivas, I.; Querol, X.; Alastuey, A.; Sunyer, J.; Álvarez-Pedrerol, M.; Bouso, L.; Sioutas, C.

2013-12-01

The mass concentration, chemical composition and sources of quasi-ultrafine (quasi-UFP, PM0.25), accumulation (PM0.25-2.5) and coarse mode (PM2.5-10) particles were determined in indoor and outdoor air at 39 schools in Barcelona (Spain). Quasi-UFP mass concentrations measured (25.6 μg m-3 outdoors, 23.4 μg m-3 indoors) are significantly higher than those reported in other studies, and characterised by higher carbonaceous and mineral matter contents and a lower proportion of secondary inorganic ions. Results suggest that quasi-UFPs in Barcelona are affected by local sources in the schools, mainly human activity (e.g. organic material from textiles, etc.; contributing 23-46% to total quasi-UFP mass) and playgrounds (in the form of mineral matter, contributing about 9% to the quasi-UFP mass). The particle size distribution of toxicologically relevant metals and major aerosol components was characterised, displaying bimodal size distributions for most elements and components, and a unimodal distribution for inorganic salts (ammonium nitrate and sulphate) and elemental carbon (EC). Regarding metals, Ni and Cr were partitioned mainly in quasi-UFPs and could thus be of interest for epidemiological studies, given their high redox properties. Children exposure to quasi-UFP mass and chemical species was assessed by comparing the concentrations measured at urban background and traffic areas schools. Finally, three main indoor sources across all size fractions were identified by assessing indoor/outdoor ratios (I/O) of PM species used as their tracers: human activity (organic material), cleaning products, paints and plastics (Cl- source), and a metallic mixed source (comprising combinations of Cu, Zn, Co, Cd, Pb, As, V and Cr).

Changing Characteristics of convective storms: Results from a continental-scale convection-permitting climate simulations

NASA Astrophysics Data System (ADS)

Prein, A. F.; Ikeda, K.; Liu, C.; Bullock, R.; Rasmussen, R.

2016-12-01

Convective storms are causing extremes such as flooding, landslides, and wind gusts and are related to the development of tornadoes and hail. Convective storms are also the dominant source of summer precipitation in most regions of the Contiguous United States. So far little is known about how convective storms might change due to global warming. This is mainly because of the coarse grid spacing of state-of-the-art climate models that are not able to resolve deep convection explicitly. Instead, coarse resolution models rely on convective parameterization schemes that are a major source of errors and uncertainties in climate change projections. Convection-permitting climate simulations, with grid-spacings smaller than 4 km, show significant improvements in the simulation of convective storms by representing deep convection explicitly. Here we use a pair of 13-year long current and future convection-permitting climate simulations that cover large parts of North America. We use the Method for Object-Based Diagnostic Evaluation (MODE) that incorporates the time dimension (MODE-TD) to analyze the model performance in reproducing storm features in the current climate and to investigate their potential future changes. We show that the model is able to accurately reproduce the main characteristics of convective storms in the present climate. The comparison with the future climate simulation shows that convective storms significantly increase in frequency, intensity, and size. Furthermore, they are projected to move slower which could result in a substantial increase in convective storm-related hazards such as flash floods, debris flows, and landslides. Some regions, such as the North Atlantic, might experience a regime shift that leads to significantly stronger storms that are unrepresented in the current climate.

Interaction of human synovial phospholipase A2 with mixed lipid bilayers: a coarse-grain and all-atom molecular dynamics simulation study.

PubMed

Qin, Shan-Shan; Yu, Yang-Xin; Li, Qi-Kai; Yu, Zhi-Wu

2013-02-26

Human secreted phospholipase A2s have been shown to promote inflammation in mammals by catalyzing the first step of the arachidonic acid pathway by breaking down phospholipids, producing fatty acids, including arachidonic acid. They bind to the membrane water interface to access their phospholipid substrates from the membrane. Their binding modes on membrane surfaces are regulated by diverse factors, including membrane charge, fluidity, and heterogeneity. The influence of these factors on the binding modes of the enzymes is not well understood. Here we have studied several human synovial phospholipase A2 (hs-PLA2)/mixed bilayer systems through a combined coarse-grain and all-atom molecular dynamics simulation. It was found that hydrophobic residues Leu2, Val3, Ala18, Leu19, Phe23, Gly30, and Phe63 that form the edge of the entrance of the hydrophobic binding pocket in hs-PLA2 tend to penetrate into the hydrophobic area of lipid bilayers, and more than half of the total amino acid residues make contact with the lipid headgroups. Each enzyme molecule forms 19-38 hydrogen bonds with the bilayer to which it binds, most of which are with the phosphate groups. Analysis of the root-mean-square deviation (rmsd) shows that residues Val30-Thr40, Tyr66-Gln80, and Lys107-Arg118 have relatively large rmsds during all-atom molecular dynamics simulations, in accordance with the observation of an enlarged entrance region of the hydrophobic binding pocket. The amino acid sequences forming the entrance of the binding pocket prefer to interact with lipid molecules that are more fluid or negatively charged, and the opening of the binding pocket would be larger when the lipid components are more fluid.

The dating and interpretation of a Mode 1 site in the Luangwa Valley, Zambia.

PubMed

Barham, Lawrence; Phillips, William M; Maher, Barbara A; Karloukovski, Vassil; Duller, Geoff A T; Jain, Mayank; Wintle, Ann G

2011-05-01

Flake based assemblages (Mode 1) comprise the earliest stone technologies known, with well-dated Oldowan sites occurring in eastern Africa between ~2.6-1.7 Ma, and in less securely dated contexts in central, southern and northern Africa. Our understanding of the spread and local development of this technology outside East Africa remains hampered by the lack of reliable numerical dating techniques applicable to non-volcanic deposits. This study applied the still relatively new technique of cosmogenic nuclide burial dating ((10)Be/(26)Al) to calculate burial ages for fluvial gravels containing Mode 1 artefacts in the Luangwa Valley, Zambia. The Manzi River, a tributary of the Luangwa River, has exposed a 4.7 m deep section of fluvial sands with discontinuous but stratified gravel layers bearing Mode 1, possibly Oldowan, artefacts in the basal layers. An unconformity divides the Manzi section, separating Mode 1 deposits from overlying gravels containing Mode 3 (Middle Stone Age) artefacts. No diagnostic Mode 2 (Acheulean) artefacts were found. Cosmogenic nuclide burial dating was attempted for the basal gravels as well as exposure ages for the upper Mode 3 gravels, but was unsuccessful. The complex depositional history of the site prevented the calculation of reliable age models. A relative chronology for the full Manzi sequence was constructed, however, from the magnetostratigraphy of the deposit (N>R>N sequence). Isothermal thermoluminescence (ITL) dating of the upper Mode 3 layers also provided consistent results (~78 ka). A coarse but chronologically coherent sequence now exists for the Manzi section with the unconformity separating probable mid- or early Pleistocene deposits below from late Pleistocene deposits above. The results suggest Mode 1 technology in the Luangwa Valley may post-date the Oldowan in eastern and southern Africa. The dating programme has contributed to a clearer understanding of the geomorphological processes that have shaped the valley and structured its archaeological record. Copyright © 2010 Elsevier Ltd. All rights reserved.

The dating and interpretation of a Mode 1 site in the Luangwa Valley, Zambia

USGS Publications Warehouse

Barham, L.; Phillips, W.M.; Maher, B.A.; Karloukovski, V.; Duller, G.A.T.; Jain, M.; Wintle, A.G.

2011-01-01

Flake based assemblages (Mode 1) comprise the earliest stone technologies known, with well-dated Oldowan sites occurring in eastern Africa between ??? 2.6-1.7 Ma, and in less securely dated contexts in central, southern and northern Africa. Our understanding of the spread and local development of this technology outside East Africa remains hampered by the lack of reliable numerical dating techniques applicable to non-volcanic deposits. This study applied the still relatively new technique of cosmogenic nuclide burial dating (10Be/26Al) to calculate burial ages for fluvial gravels containing Mode 1 artefacts in the Luangwa Valley, Zambia. The Manzi River, a tributary of the Luangwa River, has exposed a 4.7 m deep section of fluvial sands with discontinuous but stratified gravel layers bearing Mode 1, possibly Oldowan, artefacts in the basal layers. An unconformity divides the Manzi section, separating Mode 1 deposits from overlying gravels containing Mode 3 (Middle Stone Age) artefacts. No diagnostic Mode 2 (Acheulean) artefacts were found. Cosmogenic nuclide burial dating was attempted for the basal gravels as well as exposure ages for the upper Mode 3 gravels, but was unsuccessful. The complex depositional history of the site prevented the calculation of reliable age models. A relative chronology for the full Manzi sequence was constructed, however, from the magnetostratigraphy of the deposit (N>R>N sequence). Isothermal thermoluminescence (ITL) dating of the upper Mode 3 layers also provided consistent results (???78 ka). A coarse but chronologically coherent sequence now exists for the Manzi section with the unconformity separating probable mid- or early Pleistocene deposits below from late Pleistocene deposits above. The results suggest Mode 1 technology in the Luangwa Valley may post-date the Oldowan in eastern and southern Africa. The dating programme has contributed to a clearer understanding of the geomorphological processes that have shaped the valley and structured its archaeological record. ?? 2010 Elsevier Ltd.

Lubrication by Diamond and Diamondlike Carbon Coatings

NASA Technical Reports Server (NTRS)

Miyoshi, Kazuhisa

1997-01-01

Regardless of environment (ultrahigh vacuum, humid air, dry nitrogen, or water), ion-beam-deposited diamondlike carbon (DLC) and nitrogen-ion-implanted, chemical-vapor-deposited (CVD) diamond films had low steady-state coefficients of friction (less than 0.1) and low wear rates (less than or equal to 10(exp -6)cu mm/N(dot)m). These films can be used as effective wear-resistant, self-lubricating coatings regardless of environment. On the other hand, as-deposited, fine-grain CVD diamond films; polished, coarse-grain CVD diamond films; and polished and then fluorinated, coarse-grain CVD diamond films can be used as effective wear-resistant, self-lubricating coatings in humid air, in dry nitrogen, and in water, but they had a high coefficient of friction and a high wear rate in ultrahigh vacuum. The polished, coarse-grain CVD diamond film revealed an extremely low wear rate, far less than 10(exp 10) cu mm/N(dot)m, in water.

Crowding with detection and coarse discrimination of simple visual features.

PubMed

Põder, Endel

2008-04-24

Some recent studies have suggested that there are actually no crowding effects with detection and coarse discrimination of simple visual features. The present study tests the generality of this idea. A target Gabor patch, surrounded by either 2 or 6 flanker Gabors, was presented briefly at 4 deg eccentricity of the visual field. Each Gabor patch was oriented either vertically or horizontally (selected randomly). Observers' task was either to detect the presence of the target (presented with probability 0.5) or to identify the orientation of the target. The target-flanker distance was varied. Results were similar for the two tasks but different for 2 and 6 flankers. The idea that feature detection and coarse discrimination are immune to crowding may be valid for the two-flanker condition only. With six flankers, a normal crowding effect was observed. It is suggested that the complexity of the full pattern (target plus flankers) could explain the difference.

Multiblob coarse-graining for mixtures of long polymers and soft colloids

NASA Astrophysics Data System (ADS)

Locatelli, Emanuele; Capone, Barbara; Likos, Christos N.

2016-11-01

Soft nanocomposites represent both a theoretical and an experimental challenge due to the high number of the microscopic constituents that strongly influence the behaviour of the systems. An effective theoretical description of such systems invokes a reduction of the degrees of freedom to be analysed, hence requiring the introduction of an efficient, quantitative, coarse-grained description. We here report on a novel coarse graining approach based on a set of transferable potentials that quantitatively reproduces properties of mixtures of linear and star-shaped homopolymeric nanocomposites. By renormalizing groups of monomers into a single effective potential between a f-functional star polymer and an homopolymer of length N0, and through a scaling argument, it will be shown how a substantial reduction of the to degrees of freedom allows for a full quantitative description of the system. Our methodology is tested upon full monomer simulations for systems of different molecular weight, proving its full predictive potential.

On the predictability of event boundaries in discourse: An ERP investigation.

PubMed

Delogu, Francesca; Drenhaus, Heiner; Crocker, Matthew W

2018-02-01

When reading a text describing an everyday activity, comprehenders build a model of the situation described that includes prior knowledge of the entities, locations, and sequences of actions that typically occur within the event. Previous work has demonstrated that such knowledge guides the processing of incoming information by making event boundaries more or less expected. In the present ERP study, we investigated whether comprehenders' expectations about event boundaries are influenced by how elaborately common events are described in the context. Participants read short stories in which a common activity (e.g., washing the dishes) was described either in brief or in an elaborate manner. The final sentence contained a target word referring to a more predictable action marking a fine event boundary (e.g., drying) or a less predictable action, marking a coarse event boundary (e.g., jogging). The results revealed a larger N400 effect for coarse event boundaries compared to fine event boundaries, but no interaction with description length. Between 600 and 1000 ms, however, elaborate contexts elicited a larger frontal positivity compared to brief contexts. This effect was largely driven by less predictable targets, marking coarse event boundaries. We interpret the P600 effect as indexing the updating of the situation model at event boundaries, consistent with Event Segmentation Theory (EST). The updating process is more demanding with coarse event boundaries, which presumably require the construction of a new situation model.

The Effect of Debris-Flow Composition on Runout Distance

NASA Astrophysics Data System (ADS)

Haas, T. D.; Braat, L.; Leuven, J.; Lokhorst, I.; Kleinhans, M. G.

2014-12-01

Estimating runout distance is of major importance for the assessment and mitigation of debris-flow hazards. Debris-flow runout distance depends on debris-flow composition and topography, but state-of-the-art runout prediction methods are mainly based on topographical parameters and debris-flow volume, while composition is generally neglected or incorporated in empirical constants. Here we experimentally investigated the effect of debris-flow composition and topography on runout distance. We created the first small-scale experimental debris flows with self-formed levees, distinct lobes and morphology and texture accurately resembling natural debris flows. In general, debris-flow composition had a larger effect on runout distance than topography. Enhancing channel slope and width, outflow plain slope, debris-flow size and water fraction leads to an increase in runout distance. However, runout distance shows an optimum relation with coarse-material and clay fraction. An increase in coarse-material fraction leads to larger runout distances by increased grain collisional forces and more effective levee formation, but too much coarse debris causes a large accumulation of coarse debris at the flow front, enhancing friction and decreasing runout. An increase in clay fraction initially enlarges the volume and viscosity of the interstitial fluid, liquefying the flow and enhancing runout, while a further increase leads to very viscous flows with high yield strength, reducing runout. These results highlight the importance and further need of research on the relation between debris-flow composition and runout distance. Our experiments further provide valuable insight on the effects of debris-flow composition on depositional mechanisms and deposit morphology.

VERSATILE AEROSOL CONCENTRATION ENRICHMENT SYSTEM (VACES) FOR SIMULTANEOUS IN VIVO AND IN VITRO EVALUATION OF TOXIC EFFECTS OF ULTRAFINE, FINE AND COARSE AMBIENT PARTICLES. PART I: DEVELOPMENT AND LABORATORY CHARACTERIZATION. (R827352C001)

EPA Science Inventory

This study presents the development and bench-testing of a versatile aerosol concentration enrichment system (VACES) capable of simultaneously concentrating ambient particles of the coarse, fine and ultrafine size fractions for conducting in vivo and in vitro studies. The VACE...

Effect of elevated CO2 on coarse-root biomass in Florida scrub detected by ground-penetrating radar

Treesearch

Daniel B. Stover; Frank P. Day; John R Butnor; Bert G. Drake

2007-01-01

Growth and distribution of coarse roots in time and space represent a gap in our understanding of belowground ecology. Large roots may play a critical role in carbon sequestration belowground. Using ground-penetrating radar (GPR), we quantified coarseroot biomass from an open-top chamber experiment in a scrub-oak ecosystem at Kennedy Space Center, Florida, USA. GPR...

Impacts of prescribed fire frequency on coarse woody debris volume, decomposition and termite activity in the longleaf pine flatwoods of Florida

Treesearch

James L. Hanula; Michael D. Ulyshen; Dale D. Wade

2012-01-01

Abstract: Longleaf pine (Pinus palustris) ecosystems have been reduced dramatically throughout their range. Prescribed burning is considered the best way to restore and maintain plant communities associated with longleaf pine, but little is known about its effects on coarse woody debris and associated organisms. We conducted a 5-year study on the...

Effects of augmentation of coarse particulate organic matter on metabolism and nutrient retention in hyporheic sediments

Treesearch

C.L. Crenshaw; H.M. Valett; J.R. Webster

2002-01-01

1. Metabolic and biogeochemical processes in hyporheic zones may depend on inputs of coarse particulate organic matter. Our research focused on how differing quantity and quality of organic matter affects metabolism and nutrient retention in the hyporheic zone of a first-order Appalachian stream. 2. Sixteen plots were established on a tributary of Hugh White Creek, NC...

Peculiar Traits of Coarse AP (Briefing Charts)

DTIC Science & Technology

2014-12-01

coarse AP Bircumshaw, Newman Active centers are sources of AP decomposition gases AP low temperature decomposition (LTD) Most unstable AP particles ...delay before coarse AP ejection *Coarse AP particle flame retardancy 19 Air Force Research Laboratory Distribution A: Approved for public release...distribution unlimited. PA clearance #. Combustion bomb trials 2 AP phase change may enable coarse particle breakage Fractured coarse AP ejection agrees

Seasonal dynamics of coarse atmospheric particulate matter between 2.5 μm and 80 μm in Beijing and the impact of 2008 Olympic Games

NASA Astrophysics Data System (ADS)

Norra, Stefan; Yu, Yang; Dietze, Volker; Schleicher, Nina; Fricker, Mathieu; Kaminski, Uwe; Chen, Yuan; Stüben, Doris; Cen, Kuang

2016-01-01

Beijing is well known as a megacity facing severe atmospheric pollution problems. One very important kind of pollution is the high amount of particles in Beijing's atmosphere. Numerous studies investigated the dynamics of fine particles smaller 10 μm. Less information is available on the coarse particle fraction larger 10 μm, although geogenic dusts, which often are composed by those coarser particles, frequently affect the air quality in Beijing. Therefore, systematic sampling and analysis of size fractionated particulate matter between 2.5 and 80 μm was performed in Beijing from April 2005 till October 2009. Atmospheric particles were collected in the North-West of Beijing using a cost-effective passive sampling method called Sigma-2. Altogether, 200 weeks could be analysed and assessed. Concentrations and size distribution of atmospheric coarse particles were determined by automated microscopic single particle analysis. Seasonal variability of the total mass of different size fractions was identified as follows: spring > winter > autumn > summer. High concentrations of transparent mineral particles indicate the activity of geogenic sources in spring and winter time, due to asian dust events and resuspension of soil from local bare land during dry and windy periods. The percentage of opaque particle components differs seasonally with relatively high values in winter, confirming combustion of fossil fuels for heating purposes as a predominant pollution source in this season. The influence of meteorological conditions on concentrations and size distribution of atmospheric particulate matter between 2.5 and 80 μm is demonstrated for the whole sampling period. Lowest pollution by coarse aerosols occurred during the period of the 2008 Olympic Summer Games. A general trend of decreasing total coarse particle mass concentrations was observed. Due to frequently observed high total coarse particle mass concentrations of several 100 μg·m-³ it is strongly recommended to enhance research and observation regarding these air pollutants to gain a better understanding of their dynamics, health effects, well being impacts on Beijing inhabitants and the effectiveness of mitigation measures.

An analytical coarse-graining method which preserves the free energy, structural correlations, and thermodynamic state of polymer melts from the atomistic to the mesoscale.

PubMed

McCarty, J; Clark, A J; Copperman, J; Guenza, M G

2014-05-28

Structural and thermodynamic consistency of coarse-graining models across multiple length scales is essential for the predictive role of multi-scale modeling and molecular dynamic simulations that use mesoscale descriptions. Our approach is a coarse-grained model based on integral equation theory, which can represent polymer chains at variable levels of chemical details. The model is analytical and depends on molecular and thermodynamic parameters of the system under study, as well as on the direct correlation function in the k → 0 limit, c0. A numerical solution to the PRISM integral equations is used to determine c0, by adjusting the value of the effective hard sphere diameter, dHS, to agree with the predicted equation of state. This single quantity parameterizes the coarse-grained potential, which is used to perform mesoscale simulations that are directly compared with atomistic-level simulations of the same system. We test our coarse-graining formalism by comparing structural correlations, isothermal compressibility, equation of state, Helmholtz and Gibbs free energies, and potential energy and entropy using both united atom and coarse-grained descriptions. We find quantitative agreement between the analytical formalism for the thermodynamic properties, and the results of Molecular Dynamics simulations, independent of the chosen level of representation. In the mesoscale description, the potential energy of the soft-particle interaction becomes a free energy in the coarse-grained coordinates which preserves the excess free energy from an ideal gas across all levels of description. The structural consistency between the united-atom and mesoscale descriptions means the relative entropy between descriptions has been minimized without any variational optimization parameters. The approach is general and applicable to any polymeric system in different thermodynamic conditions.

Deformation Behavior of a Coarse-Grained Mg-8Al-1.5Ca-0.2Sr Magnesium Alloy at Elevated Temperatures

NASA Astrophysics Data System (ADS)

Lou, Yan; Liu, Xiao

2018-02-01

The compression tests were carried out on a coarse-grained Mg-8Al-1.5Ca-0.2Sr magnesium alloy samples at temperatures from 300 to 450 °C and strain rates from 0.001 to 10 s-1. The flow stress curves were analyzed using the double-differentiation method, and double minima were detected on the flow curves. The first set of minima is shown to identify the critical strain for twinning, while the second set indicates the critical strain for the initiation of dynamic recrystallization (DRX). Twin variant selection was numerically identified by comprehensive analysis of the Schmid factors for different deformation modes and the accommodation strains imposed on neighboring grains. It was found that twinning is initiated before DRX. Dynamic recrystallization volume increases with strain rate at a given deformation temperature. At high strain rate, various twin variants are activated to accommodate deformation, leading to the formation of twin intersections and high DRX volume. Fully dynamic recrystallized structure can be obtained at both high and low strain rates due to the high mobility of the grain and twin boundaries at the temperature of 400 °C.

Construction of a coarse-grain quasi-classical trajectory method. II. Comparison against the direct molecular simulation method

NASA Astrophysics Data System (ADS)

Macdonald, R. L.; Grover, M. S.; Schwartzentruber, T. E.; Panesi, M.

2018-02-01

This work presents the analysis of non-equilibrium energy transfer and dissociation of nitrogen molecules (N2(g+1Σ) ) using two different approaches: the direct molecular simulation (DMS) method and the coarse-grain quasi-classical trajectory (CG-QCT) method. The two methods are used to study thermochemical relaxation in a zero-dimensional isochoric and isothermal reactor in which the nitrogen molecules are heated to several thousand degrees Kelvin, forcing the system into strong non-equilibrium. The analysis considers thermochemical relaxation for temperatures ranging from 10 000 to 25 000 K. Both methods make use of the same potential energy surface for the N2(g+1Σ ) -N2(g+1Σ ) system taken from the NASA Ames quantum chemistry database. Within the CG-QCT method, the rovibrational energy levels of the electronic ground state of the nitrogen molecule are lumped into a reduced number of bins. Two different grouping strategies are used: the more conventional vibrational-based grouping, widely used in the literature, and energy-based grouping. The analysis of both the internal state populations and concentration profiles show excellent agreement between the energy-based grouping and the DMS solutions. During the energy transfer process, discrepancies arise between the energy-based grouping and DMS solution due to the increased importance of mode separation for low energy states. By contrast, the vibrational grouping, traditionally considered state-of-the-art, captures well the behavior of the energy relaxation but fails to consistently predict the dissociation process. The deficiency of the vibrational grouping model is due to the assumption of strict mode separation and equilibrium of rotational energy states. These assumptions result in errors predicting the energy contribution to dissociation from the rotational and vibrational modes, with rotational energy actually contributing 30%-40% of the energy required to dissociate a molecule. This work confirms the findings discussed in Paper I [R. L. Macdonald et al., J. Chem. Phys. 148, 054309 (2018)], which underlines the importance of rotational energy to the dissociation process, and demonstrates that an accurate non-equilibrium chemistry model must accurately predict the deviation of rovibrational distribution from equilibrium.

Construction of a coarse-grain quasi-classical trajectory method. II. Comparison against the direct molecular simulation method.

PubMed

Macdonald, R L; Grover, M S; Schwartzentruber, T E; Panesi, M

2018-02-07

This work presents the analysis of non-equilibrium energy transfer and dissociation of nitrogen molecules (N 2 (Σg+1)) using two different approaches: the direct molecular simulation (DMS) method and the coarse-grain quasi-classical trajectory (CG-QCT) method. The two methods are used to study thermochemical relaxation in a zero-dimensional isochoric and isothermal reactor in which the nitrogen molecules are heated to several thousand degrees Kelvin, forcing the system into strong non-equilibrium. The analysis considers thermochemical relaxation for temperatures ranging from 10 000 to 25 000 K. Both methods make use of the same potential energy surface for the N 2 (Σg+1)-N 2 (Σg+1) system taken from the NASA Ames quantum chemistry database. Within the CG-QCT method, the rovibrational energy levels of the electronic ground state of the nitrogen molecule are lumped into a reduced number of bins. Two different grouping strategies are used: the more conventional vibrational-based grouping, widely used in the literature, and energy-based grouping. The analysis of both the internal state populations and concentration profiles show excellent agreement between the energy-based grouping and the DMS solutions. During the energy transfer process, discrepancies arise between the energy-based grouping and DMS solution due to the increased importance of mode separation for low energy states. By contrast, the vibrational grouping, traditionally considered state-of-the-art, captures well the behavior of the energy relaxation but fails to consistently predict the dissociation process. The deficiency of the vibrational grouping model is due to the assumption of strict mode separation and equilibrium of rotational energy states. These assumptions result in errors predicting the energy contribution to dissociation from the rotational and vibrational modes, with rotational energy actually contributing 30%-40% of the energy required to dissociate a molecule. This work confirms the findings discussed in Paper I [R. L. Macdonald et al., J. Chem. Phys. 148, 054309 (2018)], which underlines the importance of rotational energy to the dissociation process, and demonstrates that an accurate non-equilibrium chemistry model must accurately predict the deviation of rovibrational distribution from equilibrium.

The effective colloid interaction in the Asakura-Oosawa model. Assessment of non-pairwise terms from the virial expansion.

PubMed

Santos, Andrés; López de Haro, Mariano; Fiumara, Giacomo; Saija, Franz

2015-06-14

The relevance of neglecting three- and four-body interactions in the coarse-grained version of the Asakura-Oosawa model is examined. A mapping between the first few virial coefficients of the binary nonadditive hard-sphere mixture representative of this model and those arising from the coarse-grained (pairwise) depletion potential approximation allows for a quantitative evaluation of the effect of such interactions. This turns out to be especially important for large size ratios and large reservoir polymer packing fractions.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Enciso, Marta, E-mail: m.enciso@latrobe.edu.au; Schütte, Christof, E-mail: schuette@zib.de; Zuse Institute Berlin, Berlin

We employ a recently developed coarse-grained model for peptides and proteins where the effect of pH is automatically included. We explore the effect of pH in the aggregation process of the amyloidogenic peptide KTVIIE and two related sequences, using three different pH environments. Simulations using large systems (24 peptides chains per box) allow us to describe the formation of realistic peptide aggregates. We evaluate the thermodynamic and kinetic implications of changes in sequence and pH upon peptide aggregation, and we discuss how a minimalistic coarse-grained model can account for these details.

Multi-scale dynamics and relaxation of a tethered membrane in a solvent by Monte Carlo simulations

NASA Astrophysics Data System (ADS)

Pandey, Ras; Anderson, Kelly; Farmer, Barry

2006-03-01

A tethered membrane modeled by a flexible sheet dissipates entropy as it wrinkles and crumples. Nodes of a coarse grained membrane are connected via multiple pathways for dynamical modes to propagate. We consider a sheet with nodes connected by fluctuating bonds on a cubic lattice. The empty lattice sites constitute an effective solvent medium via node-solvent interaction. Each node execute its stochastic motion with the Metropolis algorithm subject to bond fluctuations, excluded volume constraints, and interaction energy. Dynamics and conformation of the sheet are examined at a low and a high temperature with attractive and repulsive node-node interactions for the contrast in an attractive solvent medium. Variations of the mean square displacement of the center node of the sheet and that of its center of mass with the time steps are examined in detail which show different power-law motion from short to long time regimes. Relaxation of the gyration radius and scaling of its asymptotic value with the molecular weight are examined.

Influence of Mineral Dust On New Particle Formation and Growth: A Model Study of Heterogeneous Nucleation

NASA Astrophysics Data System (ADS)

Korhonen, H.; Kulmala, M.; Lauri, A.

Analyses of nucleation events have emphasized the importance of pre-existing par- ticles in new particle formation. When coarse mode aerosol is present, it typically dominates the condensation sink for trace gases and thus inhibits the onset of nucle- ation. A monodisperse aerosol dynamical box model is applied to investigate the effect of soluble coated mineral dust particles on new particle formation. The model in- cludes ternary H2SO4­H2O­NH3 nucleation, multicomponent condensation, coagu- lation and dry deposition. As the soluble coating can significantly change the ability of dust particles to serve as a condensation sink for condensable vapours, different mech- anisms of coating, including heterogeneous nucleation of sulphuric acid, are consid- ered. Preliminary results show that the presence of micron sized soluble coated dust par- ticles can even at relatively low concentrations prevent homogeneous nucleation or growth of nucleated particles to detectable size of 3 nm. Furthermore, critical conden- sation sinks obtained by model simulations correspond to measured sinks.

iMODFIT: efficient and robust flexible fitting based on vibrational analysis in internal coordinates.

PubMed

Lopéz-Blanco, José Ramón; Chacón, Pablo

2013-11-01

Here, we employed the collective motions extracted from Normal Mode Analysis (NMA) in internal coordinates (torsional space) for the flexible fitting of atomic-resolution structures into electron microscopy (EM) density maps. The proposed methodology was validated using a benchmark of simulated cases, highlighting its robustness over the full range of EM resolutions and even over coarse-grained representations. A systematic comparison with other methods further showcased the advantages of this proposed methodology, especially at medium to lower resolutions. Using this method, computational costs and potential overfitting problems are naturally reduced by constraining the search in low-frequency NMA space, where covalent geometry is implicitly maintained. This method also effectively captures the macromolecular changes of a representative set of experimental test cases. We believe that this novel approach will extend the currently available EM hybrid methods to the atomic-level interpretation of large conformational changes and their functional implications. Copyright © 2013 Elsevier Inc. All rights reserved.

Dynamic allostery of protein alpha helical coiled-coils

PubMed Central

Hawkins, Rhoda J; McLeish, Tom C.B

2005-01-01

Alpha helical coiled-coils appear in many important allosteric proteins such as the dynein molecular motor and bacteria chemotaxis transmembrane receptors. As a mechanism for transmitting the information of ligand binding to a distant site across an allosteric protein, an alternative to conformational change in the mean static structure is an induced change in the pattern of the internal dynamics of the protein. We explore how ligand binding may change the intramolecular vibrational free energy of a coiled-coil, using parameterized coarse-grained models, treating the case of dynein in detail. The models predict that coupling of slide, bend and twist modes of the coiled-coil transmits an allosteric free energy of ∼2kBT, consistent with experimental results. A further prediction is a quantitative increase in the effective stiffness of the coiled-coil without any change in inherent flexibility of the individual helices. The model provides a possible and experimentally testable mechanism for transmission of information through the alpha helical coiled-coil of dynein. PMID:16849225

The grain-size lineup: A test of a novel eyewitness identification procedure.

PubMed

Horry, Ruth; Brewer, Neil; Weber, Nathan

2016-04-01

When making a memorial judgment, respondents can regulate their accuracy by adjusting the precision, or grain size, of their responses. In many circumstances, coarse-grained responses are less informative, but more likely to be accurate, than fine-grained responses. This study describes a novel eyewitness identification procedure, the grain-size lineup, in which participants eliminated any number of individuals from the lineup, creating a choice set of variable size. A decision was considered to be fine-grained if no more than 1 individual was left in the choice set or coarse-grained if more than 1 individual was left in the choice set. Participants (N = 384) watched 2 high-quality or low-quality videotaped mock crimes and then completed 4 standard simultaneous lineups or 4 grain-size lineups (2 target-present and 2 target-absent). There was some evidence of strategic regulation of grain size, as the most difficult lineup was associated with a greater proportion of coarse-grained responses than the other lineups. However, the grain-size lineup did not outperform the standard simultaneous lineup. Fine-grained suspect identifications were no more diagnostic than suspect identifications from standard lineups, whereas coarse-grained suspect identifications carried little probative value. Participants were generally reluctant to provide coarse-grained responses, which may have hampered the utility of the procedure. For a grain-size approach to be useful, participants may need to be trained or instructed to use the coarse-grained option effectively. (c) 2016 APA, all rights reserved).

Model reduction for agent-based social simulation: coarse-graining a civil violence model.

PubMed

Zou, Yu; Fonoberov, Vladimir A; Fonoberova, Maria; Mezic, Igor; Kevrekidis, Ioannis G

2012-06-01

Agent-based modeling (ABM) constitutes a powerful computational tool for the exploration of phenomena involving emergent dynamic behavior in the social sciences. This paper demonstrates a computer-assisted approach that bridges the significant gap between the single-agent microscopic level and the macroscopic (coarse-grained population) level, where fundamental questions must be rationally answered and policies guiding the emergent dynamics devised. Our approach will be illustrated through an agent-based model of civil violence. This spatiotemporally varying ABM incorporates interactions between a heterogeneous population of citizens [active (insurgent), inactive, or jailed] and a population of police officers. Detailed simulations exhibit an equilibrium punctuated by periods of social upheavals. We show how to effectively reduce the agent-based dynamics to a stochastic model with only two coarse-grained degrees of freedom: the number of jailed citizens and the number of active ones. The coarse-grained model captures the ABM dynamics while drastically reducing the computation time (by a factor of approximately 20).

Model reduction for agent-based social simulation: Coarse-graining a civil violence model

NASA Astrophysics Data System (ADS)

Zou, Yu; Fonoberov, Vladimir A.; Fonoberova, Maria; Mezic, Igor; Kevrekidis, Ioannis G.

2012-06-01

Agent-based modeling (ABM) constitutes a powerful computational tool for the exploration of phenomena involving emergent dynamic behavior in the social sciences. This paper demonstrates a computer-assisted approach that bridges the significant gap between the single-agent microscopic level and the macroscopic (coarse-grained population) level, where fundamental questions must be rationally answered and policies guiding the emergent dynamics devised. Our approach will be illustrated through an agent-based model of civil violence. This spatiotemporally varying ABM incorporates interactions between a heterogeneous population of citizens [active (insurgent), inactive, or jailed] and a population of police officers. Detailed simulations exhibit an equilibrium punctuated by periods of social upheavals. We show how to effectively reduce the agent-based dynamics to a stochastic model with only two coarse-grained degrees of freedom: the number of jailed citizens and the number of active ones. The coarse-grained model captures the ABM dynamics while drastically reducing the computation time (by a factor of approximately 20).

Design and test of a hybrid foot force sensing and GPS system for richer user mobility activity recognition.

PubMed

Zhang, Zelun; Poslad, Stefan

2013-11-01

Wearable and accompanied sensors and devices are increasingly being used for user activity recognition. However, typical GPS-based and accelerometer-based (ACC) methods face three main challenges: a low recognition accuracy; a coarse recognition capability, i.e., they cannot recognise both human posture (during travelling) and transportation mode simultaneously, and a relatively high computational complexity. Here, a new GPS and Foot-Force (GPS + FF) sensor method is proposed to overcome these challenges that leverages a set of wearable FF sensors in combination with GPS, e.g., in a mobile phone. User mobility activities that can be recognised include both daily user postures and common transportation modes: sitting, standing, walking, cycling, bus passenger, car passenger (including private cars and taxis) and car driver. The novelty of this work is that our approach provides a more comprehensive recognition capability in terms of reliably recognising both human posture and transportation mode simultaneously during travel. In addition, by comparing the new GPS + FF method with both an ACC method (62% accuracy) and a GPS + ACC based method (70% accuracy) as baseline methods, it obtains a higher accuracy (95%) with less computational complexity, when tested on a dataset obtained from ten individuals.

Steam and air co-injection in removing residual TCE in unsaturated layered sandy porous media.

PubMed

Peng, Sheng; Wang, Ning; Chen, Jiajun

2013-10-01

Steam and air co-injection is a promising technique for volatile and semi-volatile organic contaminant remediation in heterogeneous porous media. In this study, removal of trichloroethene (TCE) with steam-air co-injection was investigated through a series of 2D sandbox experiments with different layered sand structures, and through numerical simulations. The results show that a layered structure with coarse sand, in which steam and air convection are relatively rapid, resulted in a higher removal rate and a larger removal ratio than those observed in an experiment using finer sand; however, the difference was not significant, and the removal ratios from three experiments ranged from 85% to 94%. Slight downward movement of TCE was observed for Experiment 1 (TCE initially in a fine sand zone encased in a coarse sand), while no such movement was observed for Experiment 2 (TCE initially in two fine sand layers encased in a coarse sand) or 3 (TCE initially in a silty sand zone encased in a coarse sand). Simulations show accumulation of TCE at the interface of the layered sands, which indicates a capillary barrier effect in restraining the downward movement of TCE. This effect is illustrated further by a numerical experiment with homogeneous coarse sand, in which continuous downward TCE movement to the bottom of the sandbox was simulated. Another numerical experiment with higher water saturation was also conducted. The results illustrate a complicated influence of water saturation on TCE removal in a layered sand structure. Published by Elsevier B.V.

Effect of forest harvesting best management practices on coarse woody debris distribution in stream and riparian zones in three Appalachian watersheds

Treesearch

J. M. McClure; R. K. Kolka; A. White

2004-01-01

The distribution of coarse woody debris (CWD) was analyzed in three Appalachian watersheds in eastern Kentucky, eighteen years after harvest. The three watersheds included an unharvested control (Control), a second watershed with best management practices (BMPs) applied that included a 15.2 m unharvested zone near the stream (BMP watershed), and a third watershed that...

Modeling the effect of dune sorting on the river long profile

NASA Astrophysics Data System (ADS)

Blom, A.

2012-12-01

River dunes, which occur in low slope sand bed and sand-gravel bed rivers, generally show a downward coarsening pattern due to grain flows down their avalanche lee faces. These grain flows cause coarse particles to preferentially deposit at lower elevations of the lee face, while fines show a preference for its upper elevations. Before considering the effect of this dune sorting mechanism on the river long profile, let us first have a look at some general trends along the river profile. Tributaries increasing the river's water discharge in streamwise direction also cause a streamwise increase in flow depth. As under subcritical conditions mean dune height generally increases with increasing flow depth, the dune height shows a streamwise increase, as well. This means that also the standard deviation of bedform height increases in streamwise direction, as in earlier work it was found that the standard deviation of bedform height linearly increases with an increasing mean value of bedform height. As a result of this streamwise increase in standard deviation of dune height, the above-mentioned dune sorting then results in a loss of coarse particles to the lower elevations of the bed that are less and even rarely exposed to the flow. This loss of coarse particles to lower elevations thus increases the rate of fining in streamwise direction. As finer material is more easily transported downstream than coarser material, a smaller bed slope is required to transport the same amount of sediment downstream. This means that dune sorting adds to river profile concavity, compared to the combined effect of abrasion, selective transport and tributaries. A Hirano-type mass conservation model is presented that deals with dune sorting. The model includes two active layers: a bedform layer representing the sediment in the bedforms and a coarse layer representing the coarse and less mobile sediment underneath migrating bedforms. The exposure of the coarse layer is governed by the rate of sediment supply from upstream. By definition the sum of the exposure of both layers equals unity. The model accounts for vertical sediment fluxes due to grain flows down the bedform lee face and the formation of a less mobile coarse layer. The model with its vertical sediment fluxes is validated against earlier flume experiments. It deals well with the transition between a plane bed and a bedform-dominated bed. Applying the model to field scale confirms that dune sorting increases river profile concavity.

Seasonal variation of fine- and coarse-mode nitrates and related aerosols over East Asia: synergetic observations and chemical transport model analysis

NASA Astrophysics Data System (ADS)

Uno, Itsushi; Osada, Kazuo; Yumimoto, Keiya; Wang, Zhe; Itahashi, Syuichi; Pan, Xiaole; Hara, Yukari; Kanaya, Yugo; Yamamoto, Shigekazu; Fairlie, Thomas Duncan

2017-11-01

We analyzed long-term fine- and coarse-mode synergetic observations of nitrate and related aerosols (SO42-, NO3-, NH4+, Na+, Ca2+) at Fukuoka (33.52° N, 130.47° E) from August 2014 to October 2015. A Goddard Earth Observing System chemical transport model (GEOS-Chem) including dust and sea salt acid uptake processes was used to assess the observed seasonal variation and the impact of long-range transport (LRT) from the Asian continent. For fine aerosols (fSO42-, fNO3-, and fNH4+), numerical results explained the seasonal changes, and a sensitivity analysis excluding Japanese domestic emissions clarified the LRT fraction at Fukuoka (85 % for fSO42-, 47 % for fNO3-, 73 % for fNH4+). Observational data confirmed that coarse NO3- (cNO3-) made up the largest proportion (i.e., 40-55 %) of the total nitrate (defined as the sum of fNO3-, cNO3-, and HNO3) during the winter, while HNO3 gas constituted approximately 40 % of the total nitrate in summer and fNO3- peaked during the winter. Large-scale dust-nitrate (mainly cNO3-) outflow from China to Fukuoka was confirmed during all dust events that occurred between January and June. The modeled cNO3- was in good agreement with observations between July and November (mainly coming from sea salt NO3-). During the winter, however, the model underestimated cNO3- levels compared to the observed levels. The reason for this underestimation was examined statistically using multiple regression analysis (MRA). We used cNa+, nss-cCa2+, and cNH4+ as independent variables to describe the observed cNO3- levels; these variables were considered representative of sea salt cNO3-, dust cNO3-, and cNO3- accompanied by cNH4+), respectively. The MRA results explained the observed seasonal changes in dust cNO3- and indicated that the dust-acid uptake scheme reproduced the observed dust-nitrate levels even in winter. The annual average contributions of each component were 43 % (sea salt cNO3-), 19 % (dust cNO3-), and 38 % (cNH4+ term). The MRA dust-cNO3- component had a high value during the dust season, and the sea salt component made a large contribution throughout the year. During the winter, cNH4+ term made a large contribution. The model did not include aerosol microphysical processes (such as condensation and coagulation between the fine anthropogenic aerosols NO3- and SO42- and coarse particles), and our results suggest that inclusion of aerosol microphysical processes is critical when studying observed cNO3- formation, especially in winter.

Disentangling the drivers of coarse woody debris behavior and carbon gas emissions during fire

NASA Astrophysics Data System (ADS)

Zhao, Weiwei; van der Werf, Guido R.; van Logtestijn, Richard S. P.; van Hal, Jurgen R.; Cornelissen, Johannes H. C.

2016-04-01

The turnover of coarse woody debris, a key terrestrial carbon pool, plays fundamental roles in global carbon cycling. Biological decomposition and fire are two main fates for dead wood turnover. Compared to slow decomposition, fire rapidly transfers organic carbon from the earth surface to the atmosphere. Both a-biotic environmental factors and biotic wood properties determine coarse wood combustion and thereby its carbon gas emissions during fire. Moisture is a key inhibitory environmental factor for fire. The properties of dead wood strongly affect how it burns either directly or indirectly through interacting with moisture. Coarse wood properties vary between plant species and between various decay stages. Moreover, if we put a piece of dead wood in the context of a forest fuel bed, the soil and wood contact might also greatly affect their fire behavior. Using controlled laboratory burns, we disentangled the effects of all these driving factors: tree species (one gymnosperms needle-leaf species, three angiosperms broad-leaf species), wood decay stages (freshly dead, middle decayed, very strongly decayed), moisture content (air-dried, 30% moisture content in mass), and soil-wood contact (on versus 3cm above the ground surface) on dead wood flammability and carbon gas efflux (CO2 and CO released in grams) during fire. Wood density was measured for all coarse wood samples used in our experiment. We found that compared to other drivers, wood decay stages have predominant positive effects on coarse wood combustion (for wood mass burned, R2=0.72 when air-dried and R2=0.52 at 30% moisture content) and associated carbon gas emissions (for CO2andCO (g) released, R2=0.55 when air-dried and R2=0.42 at 30% moisture content) during fire. Thus, wood decay accelerates wood combustion and its CO2 and CO emissions during fire, which can be mainly attributed to the decreasing wood density (for wood mass burned, R2=0.91 when air-dried and R2=0.63 at 30% moisture content) as wood becomes more decomposed. Our results provide quantitative experimental evidence for how several key abiotic and biotic factors, especially moisture content and the key underlying trait wood density, as well as their interactions, together drive coarse wood carbon turnover through fire. Our experimental data on coarse wood behavior and gas efflux during fire will help to improve the predictive power of global vegetation climate models on dead wood turnover and its feedback to climate.

Application of a coarse-grained model for DNA to homo- and heterogeneous melting equilibria

NASA Astrophysics Data System (ADS)

Tito, Nicholas B.; Stubbs, John M.

2010-01-01

Configurational-bias Monte Carlo simulations were carried out on deoxyribonucleic acid (DNA) decamers using a coarse-grained molecular model. The effects of single mutations on the melting transition were investigated as were heterogeneous systems with immobilization of one strand on a surface, both with and without a spacer. The destabilizing effect of an internal mutation is attributed to a lack of cooperativity, which acts through a hydrogen bonding nucleotide's restriction of the conformational freedom of neighboring bases. A surface-oligomer spacer is necessary for duplex stability with the destabilizing effect of the surface coinciding with the volume it excludes.

Geochemical, Sulfur Isotopic Characteristics and Source Contributions of Size-Aggregated Aerosols Collected in Baring Head, New Zealand.

NASA Astrophysics Data System (ADS)

Li, J.; Michalski, G. M.; Davy, P.; Harvey, M.; Wilkins, B. P.; Katzman, T. L.

2017-12-01

Sulfate aerosols are critical to the climate, human health, and the hydrological cycle in the atmosphere, yet the sources of sulfate in aerosols are not completely understood. In this work, we evaluated the sources of sulfate in size-aggregated aerosols from the Southern Pacific Ocean and the land of New Zealand using geochemical and isotopic analyses. Aerosols were collected at Baring Head, New Zealand between 6/30/15 to 8/4/16 using two collectors, one only collects Southern Pacific Ocean derived aerosols (open-ocean collector), the other collects aerosols from both the ocean and the land (all-direction collector). Each collector is equipped with two filters to sample size-aggregated aerosols (fine aerosols: <0.5 um and coarse aerosols: 0.5-10 um). Our results show that fine and coarse aerosols show distinctive sulfate sources: sulfate in fine aerosols is a mixture of sea-salt sulfate ( 30%) and Non-Sea-Salt sulfate (NSS-SO42-, 70%), while coarse aerosols are dominated by sea-salt sulfate. However, some NSS-SO42- was also observed in coarse aerosols collected in summer, suggesting the presence of accumulation mode NSS-SO42- aerosols, which is possibly due to high summer biogenic DMS flux. The sources of sulfur in NSS-SO42- could be further determined by their d34S values. DMS emission is likely the sole sulfur source in the open-ocean collector as it shows constant DMS-like d34S signatures (15-18‰) throughout the year. Meanwhile, the d34S of NSS-SO42- in the all-direction collector display a seasonal trend: summer time d34S values are higher and DMS-like (15-18‰), indicating DMS emission is the dominant sulfur source; winter time d34S values are lower ( 6-12‰), therefore the sulfur is likely sourced from both DMS emission and terrestrial S input with low d34S values, such as volcanic activities, fossil fuel and wood burning.

Catching ghosts with a coarse net: use and abuse of spatial sampling data in detecting synchronization

PubMed Central

2017-01-01

Synchronization of population dynamics in different habitats is a frequently observed phenomenon. A common mathematical tool to reveal synchronization is the (cross)correlation coefficient between time courses of values of the population size of a given species where the population size is evaluated from spatial sampling data. The corresponding sampling net or grid is often coarse, i.e. it does not resolve all details of the spatial configuration, and the evaluation error—i.e. the difference between the true value of the population size and its estimated value—can be considerable. We show that this estimation error can make the value of the correlation coefficient very inaccurate or even irrelevant. We consider several population models to show that the value of the correlation coefficient calculated on a coarse sampling grid rarely exceeds 0.5, even if the true value is close to 1, so that the synchronization is effectively lost. We also observe ‘ghost synchronization’ when the correlation coefficient calculated on a coarse sampling grid is close to 1 but in reality the dynamics are not correlated. Finally, we suggest a simple test to check the sampling grid coarseness and hence to distinguish between the true and artifactual values of the correlation coefficient. PMID:28202589

Coarse-grained Simulations of Conformational Changes in Multidrug Resistance Transporters

NASA Astrophysics Data System (ADS)

Jewel, S. M. Yead; Dutta, Prashanta; Liu, Jin

2016-11-01

The overexpression of multidrug resistance (MDR) systems on the gram negative bacteria causes serious problems for treatment of bacterial infectious diseases. The system effectively pumps the antibiotic drugs out of the bacterial cells. During the pumping process one of the MDR components, AcrB undergoes a series of large-scale conformational changes which are responsible for drug recognition, binding and expelling. All-atom simulations are unable to capture those conformational changes because of computational cost. Here, we implement a hybrid coarse-grained force field that couples the united-atom protein models with the coarse-grained MARTINI water/lipid, to investigate the proton-dependent conformational changes of AcrB. The simulation results in early stage ( 100 ns) of proton-dependent conformational changes agree with all-atom simulations, validating the coarse-grained model. The coarse-grained force field allows us to explore the process in microsecond simulations. Starting from the crystal structures of Access(A)/Binding(B)/Extrusion(E) monomers in AcrB, we find that deprotonation of Asp407 and Asp408 in monomer E causes a series of large-scale conformational changes from ABE to AAA in absence of drug molecules, which is consistent with experimental findings. This work is supported by NIH Grant: 1R01GM122081-01.

The Effects of Propellant Slosh Dynamics on the Solar Dynamics Observatory

NASA Technical Reports Server (NTRS)

Mason, Paul; Starin, Scott R.

2011-01-01

The Solar Dynamics Observatory (SDO) mission, which is part of the Living With a Star program, was successfully launched and deployed from its Atlas V launch vehicle on February 11, 2010. SDO is an Explorer-class mission now operating in a geosynchronous orbit (GEO). The basic mission is to observe the Sun for a very high percentage of the 5-year mission (10-year goal) with long stretches of uninterrupted observations and with constant, high-data-rate transmission to a dedicated ground station located in White Sands, New Mexico. A significant portion of SDO's launch mass was propellant, contained in two large tanks. To ensure performance with this level of propellant, a slosh analysis was performed. This paper provides an overview of the SDO slosh analysis, the on-orbit experience, and the lessons learned. SDO is a three-axis controlled, single fault tolerant spacecraft. The attitude sensor complement includes sixteen coarse Sun sensors, a digital Sun sensor, three two-axis inertial reference units, two star trackers, and four guide telescopes. Attitude actuation is performed either using four reaction wheels or eight thrusters, depending on the control mode, along with single main engine which nominally provides velocity-change thrust. The attitude control software has five nominal control modes: three wheel-based modes and two thruster-based modes. A wheel-based Safehold running in the Attitude Control Electronics (ACE) box improves the robustness of the system as a whole. All six modes are designed on the same basic proportional-integral-derivative attitude error structure, with more robust modes setting their integral gains to zero. To achieve and maintain a geosynchronous orbit for a 2974-kilogram spacecraft in a cost effective manner, the SDO team designed a high-efficiency propulsive system. This bi-propellant design includes a 100-pound-force main engine and eight 5-pound-force attitude control thrusters. The main engine provides high specific impulse for the maneuvers to attain GEO, while the smaller Attitude Control System (ACS) thrusters manage the disturbance torques of the larger main engine and provide the capability for much smaller orbit adjustment burns. SDO's large solar profile produces a large solar torque disturbance and momentum buildup. This buildup drives the frequency of momentum unloads via ACS thrusters. SDO requires 1409 kilograms (which is approximately half the launch mass) of propellant to achieve and maintain the GEO orbit while performing the momentum unloads for 10 years.

Correlation-coefficient-based fast template matching through partial elimination.

PubMed

Mahmood, Arif; Khan, Sohaib

2012-04-01

Partial computation elimination techniques are often used for fast template matching. At a particular search location, computations are prematurely terminated as soon as it is found that this location cannot compete with an already known best match location. Due to the nonmonotonic growth pattern of the correlation-based similarity measures, partial computation elimination techniques have been traditionally considered inapplicable to speed up these measures. In this paper, we show that partial elimination techniques may be applied to a correlation coefficient by using a monotonic formulation, and we propose basic-mode and extended-mode partial correlation elimination algorithms for fast template matching. The basic-mode algorithm is more efficient on small template sizes, whereas the extended mode is faster on medium and larger templates. We also propose a strategy to decide which algorithm to use for a given data set. To achieve a high speedup, elimination algorithms require an initial guess of the peak correlation value. We propose two initialization schemes including a coarse-to-fine scheme for larger templates and a two-stage technique for small- and medium-sized templates. Our proposed algorithms are exact, i.e., having exhaustive equivalent accuracy, and are compared with the existing fast techniques using real image data sets on a wide variety of template sizes. While the actual speedups are data dependent, in most cases, our proposed algorithms have been found to be significantly faster than the other algorithms.

A methodology for evaluating detection performance of ultrasonic array imaging algorithms for coarse-grained materials.

PubMed

Van Pamel, Anton; Brett, Colin R; Lowe, Michael J S

2014-12-01

Improving the ultrasound inspection capability for coarse-grained metals remains of longstanding interest and is expected to become increasingly important for next-generation electricity power plants. Conventional ultrasonic A-, B-, and C-scans have been found to suffer from strong background noise caused by grain scattering, which can severely limit the detection of defects. However, in recent years, array probes and full matrix capture (FMC) imaging algorithms have unlocked exciting possibilities for improvements. To improve and compare these algorithms, we must rely on robust methodologies to quantify their performance. This article proposes such a methodology to evaluate the detection performance of imaging algorithms. For illustration, the methodology is applied to some example data using three FMC imaging algorithms; total focusing method (TFM), phase-coherent imaging (PCI), and decomposition of the time-reversal operator with multiple scattering filter (DORT MSF). However, it is important to note that this is solely to illustrate the methodology; this article does not attempt the broader investigation of different cases that would be needed to compare the performance of these algorithms in general. The methodology considers the statistics of detection, presenting the detection performance as probability of detection (POD) and probability of false alarm (PFA). A test sample of coarse-grained nickel super alloy, manufactured to represent materials used for future power plant components and containing some simple artificial defects, is used to illustrate the method on the candidate algorithms. The data are captured in pulse-echo mode using 64-element array probes at center frequencies of 1 and 5 MHz. In this particular case, it turns out that all three algorithms are shown to perform very similarly when comparing their flaw detection capabilities.

Research on the method of improving the accuracy of CMM (coordinate measuring machine) testing aspheric surface

NASA Astrophysics Data System (ADS)

Cong, Wang; Xu, Lingdi; Li, Ang

2017-10-01

Large aspheric surface which have the deviation with spherical surface are being used widely in various of optical systems. Compared with spherical surface, Large aspheric surfaces have lots of advantages, such as improving image quality, correcting aberration, expanding field of view, increasing the effective distance and make the optical system compact, lightweight. Especially, with the rapid development of space optics, space sensor resolution is required higher and viewing angle is requred larger. Aspheric surface will become one of the essential components in the optical system. After finishing Aspheric coarse Grinding surface profile error is about Tens of microns[1].In order to achieve the final requirement of surface accuracy,the aspheric surface must be quickly modified, high precision testing is the basement of rapid convergence of the surface error . There many methods on aspheric surface detection[2], Geometric ray detection, hartmann detection, ronchi text, knifeedge method, direct profile test, interferometry, while all of them have their disadvantage[6]. In recent years the measure of the aspheric surface become one of the import factors which are restricting the aspheric surface processing development. A two meter caliber industrial CMM coordinate measuring machine is avaiable, but it has many drawbacks such as large detection error and low repeatability precision in the measurement of aspheric surface coarse grinding , which seriously affects the convergence efficiency during the aspherical mirror processing. To solve those problems, this paper presents an effective error control, calibration and removal method by calibration mirror position of the real-time monitoring and other effective means of error control, calibration and removal by probe correction and the measurement mode selection method to measure the point distribution program development. This method verified by real engineer examples, this method increases the original industrial-grade coordinate system nominal measurement accuracy PV value of 7 microns to 4microns, Which effectively improves the grinding efficiency of aspheric mirrors and verifies the correctness of the method. This paper also investigates the error detection and operation control method, the error calibration of the CMM and the random error calibration of the CMM .

Regularized Stokeslet representations for the flow around a human sperm

NASA Astrophysics Data System (ADS)

Ishimoto, Kenta; Gadelha, Hermes; Gaffney, Eamonn; Smith, David; Kirkman-Brown, Jackson

2017-11-01

The sperm flagellum does not simply push the sperm. We have established a new theoretical scheme for the dimensional reduction of swimming sperm dynamics, via high-frame-rate digital microscopy of a swimming human sperm cell. This has allowed the reconstruction of the flagellar waveform as a limit cycle in a phase space of PCA modes. With this waveform, boundary element numerical simulation has successfully captured fine-scale sperm swimming trajectories. Further analyses on the flow field around the cell has also demonstrated a pusher-type time-averaged flow, though the instantaneous flow field can temporarily vary in a more complicated manner - even pulling the sperm. Applying PCA to the flow field, we have further found that a small number of PCA modes explain the temporal patterns of the flow, whose core features are well approximated by a few regularized Stokeslets. Such representations provide a methodology for coarse-graining the time-dependent flow around a human sperm and other flagellar microorganisms for use in developing population level models that retain individual cell dynamics.

Gene regulatory networks: a coarse-grained, equation-free approach to multiscale computation.

PubMed

Erban, Radek; Kevrekidis, Ioannis G; Adalsteinsson, David; Elston, Timothy C

2006-02-28

We present computer-assisted methods for analyzing stochastic models of gene regulatory networks. The main idea that underlies this equation-free analysis is the design and execution of appropriately initialized short bursts of stochastic simulations; the results of these are processed to estimate coarse-grained quantities of interest, such as mesoscopic transport coefficients. In particular, using a simple model of a genetic toggle switch, we illustrate the computation of an effective free energy Phi and of a state-dependent effective diffusion coefficient D that characterize an unavailable effective Fokker-Planck equation. Additionally we illustrate the linking of equation-free techniques with continuation methods for performing a form of stochastic "bifurcation analysis"; estimation of mean switching times in the case of a bistable switch is also implemented in this equation-free context. The accuracy of our methods is tested by direct comparison with long-time stochastic simulations. This type of equation-free analysis appears to be a promising approach to computing features of the long-time, coarse-grained behavior of certain classes of complex stochastic models of gene regulatory networks, circumventing the need for long Monte Carlo simulations.

Advancing Understanding of the Role of Belowground Processes in Terrestrial Carbon Sinks trhrough Ground-Penetrating Radar. Final Report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Day, Frank P.

2015-02-06

Coarse roots play a significant role in belowground carbon cycling and will likely play an increasingly crucial role in belowground carbon sequestration as atmospheric CO 2 levels continue to rise, yet they are one of the most difficult ecosystem parameters to quantify. Despite promising results with ground-penetrating radar (GPR) as a nondestructive method of quantifying biomass of coarse roots, this application of GPR is in its infancy and neither the complete potential nor limitations of the technology have been fully evaluated. The primary goals and questions of this study fell into four groups: (1) GPR methods: Can GPR detect changemore » in root biomass over time, differentiate live roots from dead roots, differentiate between coarse roots, fine roots bundled together, and a fine root mat, remain effective with varied soil moisture, and detect shadowed roots (roots hidden below larger roots); (2) CO 2 enrichment study at Kennedy Space Center in Brevard County, Florida: Are there post-fire legacy effects of CO 2 fertilization on plant carbon pools following the end of CO 2application ? (3) Disney Wilderness Study: What is the overall coarse root biomass and potential for belowground carbon storage in a restored longleaf pine flatwoods system? Can GPR effectively quantify coarse roots in soils that are wetter than the previous sites and that have a high percentage of saw palmetto rhizomes present? (4) Can GPR accurately represent root architecture in a three-dimensional model? When the user is familiar with the equipment and software in a setting that minimizes unsuitable conditions, GPR is a relatively precise, non-destructive, useful tool for estimating coarse root biomass. However, there are a number of cautions and guidelines that should be followed to minimize inaccuracies or situations that are untenable for GPR use. GPR appears to be precise as it routinely predicts highly similar values for a given area across multiple scanning events; however, it appears to lack sufficient accuracy at small scales. Knowledge of soil conditions and their effects on GPR wave propagation and reception are paramount for the collection of useful data. Strong familiarity with the software and equipment is both important and necessary for GPR use in estimating coarse root biomass. GPR must be utilized at low soil moisture levels in order to accurately represent existing coarse root structures. Our results from Disney Wilderness Preserve highlight the need for a strong understanding of the limitations of GPR, specifically knowledge of root structures (saw palmetto rhizomes) or environmental factors (low moisture content) that may hinder its application within a given system. The 3D modeling of course roots with GPR appears quite promising, as it has become more accurate and precise as the software has advanced and become more robust, but there is still a need for more precision before it will likely be able to model anything more than simple root systems comprised mostly of large diameter roots. Our results from Kennedy Space Center suggest that there are legacy effects from CO 2 fertilization in the form of more root mass providing a greater capacity for aboveground plant regrowth following fire, even 7 years after treatment ended.« less

The size distribution and origin of elements bound to ambient particles: a case study of a Polish urban area.

PubMed

Rogula-Kozłowska, Wioletta; Majewski, Grzegorz; Czechowski, Piotr Oskar

2015-05-01

Ambient particulate matter (PM) was sampled in Zabrze (southern Poland) in the heating period of 2009. It was investigated for distribution of its mass and of the masses of its 18 component elements (S, Cl, K, Ca, Cr, Mn, Fe, Ni, Cu, Zn, Ge, As, Br, Sr, Cd, Sb, Ba, and Pb) among 13 PM size fractions. In the paper, the distribution modality of and the correlations between the ambient concentrations of these elements are discussed and interpreted in terms of the source apportionment of PM emissions. By weight, S, Cl, K, Ca, Cr, Mn, Fe, Ni, Cu, Zn, Ge, As, Br, Sr, Cd, Sb, Ba, and Pb were 10% of coarse and 9% of ultrafine particles. The collective mass of these elements was no more than 3.5 % of the mass of the particles with the aerodynamic diameter D p between 0.4 and 1.0 μm (PM₀.₄₋₁), whose ambient mass concentration was the highest. The PM mass size distribution for the sampling period is bimodal; it has the accumulation and coarse modes. The coarse particles were probably of the mineral/soil origin (characteristic elements: Ca, Fe, Sr, and Ba), being re-suspended polluted soil or road dust (characteristic elements: Ca, Fe, Sr, Ba, S, K, Cr, Cu, Zn, Br, Sb, Pb). The maxima of the density functions (modes) of the concentration distributions with respect to particle size of PM-bound S, Cl, K, Cu, Zn, Ge, Br, Cd, Sb, and Pb within the D p interval from 0.108 to 1.6 μm (accumulation PM particles) indicate the emissions from furnaces and road traffic. The distributions of PM-bound As, Mn, Ba, and Sr concentrations have their modes within D p ≤ 0.108 μm (nucleation PM particles), indicating the emissions from high-temperature processes (industrial sources or car engines). In this work, principal component analysis (PCA) is applied separately to each of the 13 fraction-related sets of the concentrations of the 18 PM-bound elements, and further, the fractions are grouped by their origin using cluster analysis (CA) applied to the 13 fraction-related first principal components (PC1). Four distinct groups of the PM fractions are identified: (PM₁.₆₋₂.₅, PM₂.₅₋₄.₄,), (PM₀.₀₃₋₀.₀₆, PM₀.₁₀₈₋₀.₁₇), (PM₀.₀₆₋₀.₁₀₈, PM₀.₁₇₋₀.₂₆, PM₀.₂₆₋₀.₄, PM₀.₄₋₀.₆₅, PM₀.₆₅₋₁, PM₁₋₁.₆), and (PM₄.₄₋₆.₈, PM₆.₈₋₁₀, PM>₁₀). The PM sources attributed to these groups by using PCA followed by CA are roughly the same as the sources from the apportionment done by analyzing the modality of the mass size distributions.

Effect of aerosol microphysical properties on polarization of skylight: sensitivity study and measurements.

PubMed

Boesche, Eyk; Stammes, Piet; Ruhtz, Thomas; Preusker, Réne; Fischer, Juergen

2006-12-01

We analyze the sensitivity of the degree of linear polarization in the Sun's principal plane as a function of aerosol microphysical parameters: the real and imaginary parts of the refractive index, the median radius and geometric standard deviation of the bimodal size distribution (both fine and coarse modes), and the relative number weight of the fine mode at a wavelength of 675 nm. We use Mie theory for single-scattering simulations and the doubling-adding method with the inclusion of polarization for multiple scattering. It is shown that the behavior of the degree of linear polarization is highly sensitive to both the small mode of the bimodal size distribution and the real part of the refractive index of aerosols, as well as to the aerosol optical thickness; whereas not all parameters influence the polarization equally. A classification of the importance of the input parameters is given. This sensitivity study is applied to an analysis of ground-based polarization measurements. For the passive remote sensing of microphysical and optical properties of aerosols, a ground-based spectral polarization measuring system was built, which aims to measure the Stokes parameters I, Q, and U in the visible (from 410 to 789 nm) and near-infrared (from 674 to 995 nm) spectral range with a spectral resolution of 7 nm in the visible and 2.4 nm in the near infrared. We compare polarization measurements taken with radiative transfer simulations under both clear- and hazy-sky conditions in an urban area (Cabauw, The Netherlands, 51.58 degrees N, 4.56 degrees E). Conclusions about the microphysical properties of aerosol are drawn from the comparison.

Statistical physics of modulated phases in nematic liquid crystals

NASA Astrophysics Data System (ADS)

Shamid, Shaikh M.

Nematic liquid crystals are the state of the matter in which there is no positional order like crystals but it has orientational order of the constituent molecules. In the conventional nematics, the long axes of the rod-like molecules tend to align up or down uniformly along a director n. If the constituent molecules are chiral, they tend to form a modulated structure in one of the space dimensions. They are called the chiral nematics. If the chirality is strong enough we get the modulated structures in all three dimensions called the chiral blue phase. On the other hand, if the molecules are achiral, but an additional polar dipole is attached to the molecules, they also tend to form a modulated structure. In these types of materials we observe an important physical effect called flexoelectric effect, in which the polar order is linearly coupled to the director gradients. This dissertation work presents analytical and simulation studies of that modulated structures using the flexoelectric mechanism. Classic work by R. B. Meyer and further studies by I. Dozov predicted two possible structures, known as twist-bend and splay-bend. One of these predictions, the twist-bend phase, has recently been identified in experiments on bent-shaped liquid crystals. In this recently discovered twist-bend nematic phase the modulation is along one of the space dimensions. If this flexoelectric coupling is strong enough, in addition to twist-bend and splay-bend, here we predict the formation of polar analog of chiral blue phases (in both 2D and 3D) made of achiral polar liquid crystal materials by using Elastic continuum theory-based numerical calculations and computer simulations. This dissertation work also presents the coarse-grained theory of twist-bend phase. This theory predicts normal modes of fluctuation in both sides of nematic to twist-bend transition, which then compared with light scattering experiments. Macroscopic elastic and electric properties of twist-bend nematics can be realized using this coarse-grained description.

The fine scale physical attributes of coarse woody debris and effects of surrounding stand structure on its utilization by ants (Hymenoptera: Formicidae) in British Columbia, Canada

Treesearch

Robert J. Higgins; B. Staffan Lindgren

2006-01-01

Coarse woody debris (CWD) is increasingly recognized in Canada for its contribution toward biodiversity. It is a particularly vital resource in subboreal forests as nesting habitat for ants (Formicidae). Wood, which has low specific heat, provides a thermally favorable environment in this cool climate. Ants contribute to the physical breakdown of wood, and colonies are...

Effects of mineral dust on global atmospheric nitrate concentrations

NASA Astrophysics Data System (ADS)

Karydis, V. A.; Tsimpidi, A. P.; Pozzer, A.; Astitha, M.; Lelieveld, J.

2016-02-01

This study assesses the chemical composition and global aerosol load of the major inorganic aerosol components, focusing on mineral dust and aerosol nitrate. The mineral dust aerosol components (i.e., Ca2+, Mg2+, K+, Na+) and their emissions are included in the ECHAM5/MESSy Atmospheric Chemistry model (EMAC). Gas/aerosol partitioning is simulated using the ISORROPIA-II thermodynamic equilibrium model that considers K+, Ca2+, Mg2+, NH4+, Na+, SO42-, NO3-, Cl-, and H2O aerosol components. Emissions of mineral dust are calculated online by taking into account the soil particle size distribution and chemical composition of different deserts worldwide. Presence of metallic ions can substantially affect the nitrate partitioning into the aerosol phase due to thermodynamic interactions. The model simulates highest fine aerosol nitrate concentration over urban and industrialized areas (1-3 µg m-3), while coarse aerosol nitrate is highest close to deserts (1-4 µg m-3). The influence of mineral dust on nitrate formation extends across southern Europe, western USA, and northeastern China. The tropospheric burden of aerosol nitrate increases by 44 % when considering interactions of nitrate with mineral dust. The calculated global average nitrate aerosol concentration near the surface increases by 36 %, while the coarse- and fine-mode concentrations of nitrate increase by 53 and 21 %, respectively. Other inorganic aerosol components are affected by reactive dust components as well (e.g., the tropospheric burden of chloride increases by 9 %, ammonium decreases by 41 %, and sulfate increases by 7 %). Sensitivity tests show that nitrate aerosol is most sensitive to the chemical composition of the emitted mineral dust, followed by the soil size distribution of dust particles, the magnitude of the mineral dust emissions, and the aerosol state assumption.

High concentrations of coarse particles emitted from a cattle feeding operation

NASA Astrophysics Data System (ADS)

Hiranuma, N.; Brooks, S. D.; Gramann, J.; Auvermann, B. W.

2011-08-01

Housing roughly 10 million head of cattle in the United States alone, open air cattle feedlots represent a significant but poorly constrained source of atmospheric particles. Here we present a comprehensive characterization of physical and chemical properties of particles emitted from a large representative cattle feedlot in the Southwest United States. In the summer of 2008, measurements and samplings were conducted at the upwind and downwind edges of the facility. A series of far-field measurements and samplings was also conducted 3.5 km north of the facility. Two instruments, a GRIMM Sequential Mobility Particle Sizer (SMPS) and a GRIMM Portable Aerosol Spectrometer (PAS), were used to measure particle size distributions over the range of 0.01 to 25 μm diameter. Raman microspectroscopy was used to determine the chemical composition of particles on a single particle basis. Volume size distributions of dust were dominated by coarse mode particles. Twenty-four hour averaged concentrations of PM10 (particulate matter with a diameter of 10 μm or less) were as high as 1200 μg m-3 during the campaign. The primary constituents of the particulate matter were carbonaceous materials, such as humic acid, water soluble organics, and less soluble fatty acids, including stearic acid and tristearin. A significant fraction of the organic particles was present in internal mixtures with salts. Basic characteristics such as size distribution and composition of agricultural aerosols were found to be different than the properties of those found in urban and semi-urban aerosols. Failing to account for such differences may lead to errors in estimates of aerosol effects on local air quality, visibility, and public health.

Effects of flow scarcity on leaf-litter processing under oceanic climate conditions in calcareous streams.

PubMed

Martínez, Aingeru; Pérez, Javier; Molinero, Jon; Sagarduy, Mikel; Pozo, Jesús

2015-01-15

Although temporary streams represent a high proportion of the total number and length of running waters, historically the study of intermittent streams has received less attention than that of perennial ones. The goal of the present study was to assess the effects of flow cessation on litter decomposition in calcareous streams under oceanic climate conditions. For this, leaf litter of alder was incubated in four streams (S1, S2, S3 and S4) with different flow regimes (S3 and S4 with zero-flow periods) from northern Spain. To distinguish the relative importance and contribution of decomposers and detritivores, fine- and coarse-mesh litter bags were used. We determined processing rates, leaf-C, -N and -P concentrations, invertebrate colonization in coarse bags and benthic invertebrates. Decomposition rates in fine bags were similar among streams. In coarse bags, only one of the intermittent streams, S4, showed a lower rate than that in the other ones as a consequence of lower invertebrate colonization. The material incubated in fine bags presented higher leaf-N and -P concentrations than those in the coarse ones, except in S4, pointing out that the decomposition in this stream was driven mainly by microorganisms. Benthic macroinvertebrate and shredder density and biomass were lower in intermittent streams than those in perennial ones. However, the bags in S3 presented a greater amount of total macroinvertebrates and shredders comparing with the benthos. The most suitable explanation is that the fauna find a food substrate in bags less affected by calcite precipitation, which is common in the streambed at this site. Decomposition rate in coarse bags was positively related to associated shredder biomass. Thus, droughts in streams under oceanic climate conditions affect mainly the macroinvertebrate detritivore activity, although macroinvertebrates may show distinct behavior imposed by the physicochemical properties of water, mainly travertine precipitation, which can override the flow intermittence effects. Copyright © 2014. Published by Elsevier B.V.

The effect of liming on antibacterial and hormone levels in wastewater biosolids.

PubMed

Olszewski, Jennifer M; Lozano, Nuria; Haines, Christine; Rice, Clifford P; Ramirez, Mark; Torrents, Alba

2013-01-01

This study analyzes the effect of liming on levels of triclocarban (TCC), triclosan (TCS), estrone (E1), and progesterone (P), two antimicrobial agents and two natural hormones, respectively. Factors studied include lime particle size, mixing time, and overall lime contact time. The study results suggest that coarse lime may be more active than fine lime due to less interaction with surrounding air. Both TCS and TCC concentrations were lower in coarse limed samples versus unlimed samples and the decrease was a function of time. A similar, but statistically insignificant trend in TCC and TCS levels was observed in fine lime samples with respect to unlimed samples. Liming was also found to decrease apparent E1 levels, with more notable decreases in samples amended with coarse lime. P-levels significantly increased after 1-day of contact time, stabilizing over the next 14 days of the study period. This increase and stabilization of P-levels was attributed to the pH and moisture-driven conversion of more chemically complex steroids into P.

Coarse-Grain Molecular Dynamics Simulations To Investigate the Bulk Viscosity and Critical Micelle Concentration of the Ionic Surfactant Sodium Dodecyl Sulfate (SDS) in Aqueous Solution.

PubMed

Ruiz-Morales, Yosadara; Romero-Martínez, Ascención

2018-04-12

The first critical micelle concentration (CMC) of the ionic surfactant sodium dodecyl sulfate (SDS) in diluted aqueous solution has been determined at room temperature from the investigation of the bulk viscosity, at several concentrations of SDS, by means of coarse-grain molecular dynamics simulations. The coarse-grained model molecules at the mesoscale level are adopted. The bulk viscosity of SDS was calculated at several millimolar concentrations of SDS in water using the MARTINI force field by means of NVT shear Mesocite molecular dynamics. The definition of each bead in the MARTINI force field is established, as well as their radius, volume, and mass. The effect of the size of the simulation box on the obtained CMC has been investigated, as well as the effect of the number of SDS molecules, in the simulations, on the formation of aggregates. The CMC, which was obtained from a graph of the calculated viscosities versus concentration, is in good agreement with the reported experimental data and does not depend on the size of the box used in the simulation. The formation of a spherical micelle-like aggregate is observed, where the dodecyl sulfate tails point inward and the heads point outward the aggregation micelle, in accordance with experimental observations. The advantage of using coarse-grain molecular dynamics is the possibility of treating explicitly charged beads, applying a shear flow for viscosity calculation, and processing much larger spatial and temporal scales than atomistic molecular dynamics can. Furthermore, the CMC of SDS obtained with the coarse-grained model is in much better agreement with the experimental value than the value obtained with atomistic simulations.

The effect of acute exposure to coarse particulate matter air pollution in a rural location on circulating endothelial progenitor cells: results from a randomized controlled study

PubMed Central

Brook, Robert D.; Bard, Robert L.; Kaplan, Mariana J.; Yalavarthi, Srilakshmi; Morishita, Masako; Dvonch, J. Timothy; Wang, Lu; Yang, Hui-yu; Spino, Catherine; Mukherjee, Bhramar; Oral, Elif A.; Sun, Qinghua; Brook, Jeffrey R.; Harkema, Jack; Rajagopalan, Sanjay

2015-01-01

Context Fine particulate matter (PM) air pollution has been associated with alterations in circulating endothelial progenitor cell (EPC) levels, which may be one mechanism whereby exposures promote cardiovascular diseases. However, the impact of coarse PM on EPCs is unknown. Objective We aimed to determine the effect of acute exposure to coarse concentrated ambient particles (CAP) on circulating EPC levels. Methods Thirty-two adults (25.9±6.6 years) were exposed to coarse CAP (76.2±51.5 μgm−3) in a rural location and filtered air (FA) for 2 h in a randomized double-blind crossover study. Peripheral venous blood was collected 2 and 20 h post-exposures for circulating EPC (n=21), white blood cell (n=24) and vascular endothelial growth factor (VEGF) (n=16–19) levels. The changes between exposures were compared by matched Wilcoxon signed-rank tests. Results Circulating EPC levels were elevated 2 [108.29 (6.24–249.71) EPC mL−1; median (25th–75th percentiles), p=0.052] and 20 h [106.86 (52.91–278.35) EPC mL−1, p=0.008] post-CAP exposure compared to the same time points following FA [38.47 (0.00–84.83) and 50.16 (0.00–104.79) EPC mL−1]. VEGF and white blood cell (WBC) levels did not differ between exposures. Conclusions Brief inhalation of coarse PM from a rural location elicited an increase in EPCs that persisted for at least 20 h. The underlying mechanism responsible may reflect a systemic reaction to an acute “endothelial injury” and/or a circulating EPC response to sympathetic nervous system activation. PMID:23919441

A general method for the derivation of the functional forms of the effective energy terms in coarse-grained energy functions of polymers. I. Backbone potentials of coarse-grained polypeptide chains

NASA Astrophysics Data System (ADS)

Sieradzan, Adam K.; Makowski, Mariusz; Augustynowicz, Antoni; Liwo, Adam

2017-03-01

A general and systematic method for the derivation of the functional expressions for the effective energy terms in coarse-grained force fields of polymer chains is proposed. The method is based on the expansion of the potential of mean force of the system studied in the cluster-cumulant series and expanding the all-atom energy in the Taylor series in the squares of interatomic distances about the squares of the distances between coarse-grained centers, to obtain approximate analytical expressions for the cluster cumulants. The primary degrees of freedom to average about are the angles for collective rotation of the atoms contained in the coarse-grained interaction sites about the respective virtual-bond axes. The approach has been applied to the revision of the virtual-bond-angle, virtual-bond-torsional, and backbone-local-and-electrostatic correlation potentials for the UNited RESidue (UNRES) model of polypeptide chains, demonstrating the strong dependence of the torsional and correlation potentials on virtual-bond angles, not considered in the current UNRES. The theoretical considerations are illustrated with the potentials calculated from the ab initio potential-energy surface of terminally blocked alanine by numerical integration and with the statistical potentials derived from known protein structures. The revised torsional potentials correctly indicate that virtual-bond angles close to 90° result in the preference for the turn and helical structures, while large virtual-bond angles result in the preference for polyproline II and extended backbone geometry. The revised correlation potentials correctly reproduce the preference for the formation of β-sheet structures for large values of virtual-bond angles and for the formation of α-helical structures for virtual-bond angles close to 90°.

Characterizing and contrasting instream and riparian coarse wood in western Montana basins

Treesearch

Michael K. Young; Ethan A. Mace; Eric T. Ziegler; Elaine K. Sutherland

2006-01-01

The importance of coarse wood to aquatic biota and stream channel structure is widely recognized, yet characterizations of large-scale patterns in coarse wood dimensions and loads are rare. To address these issues, we censused instream coarse wood ( 2 m long and 10 cm minimum diameter) and sampled riparian coarse wood and channel characteristics in and along 13 streams...

Ambient measurements of biological aerosol particles near Killarney, Ireland: a comparison between real-time fluorescence and microscopy techniques

NASA Astrophysics Data System (ADS)

Healy, D. A.; Huffman, J. A.; O'Connor, D. J.; Pöhlker, C.; Pöschl, U.; Sodeau, J. R.

2014-08-01

Primary biological aerosol particles (PBAPs) can contribute significantly to the coarse particle burden in many environments. PBAPs can thus influence climate and precipitation systems as cloud nuclei and can spread disease to humans, animals, and plants. Measurement data and techniques for PBAPs in natural environments at high time- and size resolution are, however, sparse, and so large uncertainties remain in the role that biological particles play in the Earth system. In this study two commercial real-time fluorescence particle sensors and a Sporewatch single-stage particle impactor were operated continuously from 2 August to 2 September 2010 at a rural sampling location in Killarney National Park in southwestern Ireland. A cascade impactor was operated periodically to collect size-resolved particles during exemplary periods. Here we report the first ambient comparison of a waveband integrated bioaerosol sensor (WIBS-4) with a ultraviolet aerodynamic particle sizer (UV-APS) and also compare these real-time fluorescence techniques with results of fluorescence and optical microscopy of impacted samples. Both real-time instruments showed qualitatively similar behavior, with increased fluorescent bioparticle concentrations at night, when relative humidity was highest and temperature was lowest. The fluorescent particle number from the FL3 channel of the WIBS-4 and from the UV-APS were strongly correlated and dominated by a 3 μm mode in the particle size distribution. The WIBS FL2 channel exhibited particle modes at approx. 1 and 3 μm, and each was correlated with the concentration of fungal spores commonly observed in air samples collected at the site (ascospores, basidiospores, Ganoderma spp.). The WIBS FL1 channel exhibited variable multimodal distributions turning into a broad featureless single mode after averaging, and exhibited poor correlation with fungal spore concentrations, which may be due to the detection of bacterial and non-biological fluorescent particles. Cladosporium spp., which are among the most abundant fungal spores in many terrestrial environments, were not correlated with any of the real-time fluorescence channels, suggesting that the real-time fluorescence instruments are relatively insensitive to PBAP classes with dark, highly absorptive cell walls. Fluorescence microscopy images of cascade impactor plates showed large numbers of coarse-mode particles consistent with the morphology and weak fluorescence expected of sea salt. Some of these particles were attached to biological cells, suggesting that a marine source influenced the PBAPs observed at the site and that the ocean may be an important contributor to PBAP loadings in coastal environments.

Ambient measurements of biological aerosol particles near Killarney, Ireland: a comparison between real-time fluorescence and microscopy techniques

NASA Astrophysics Data System (ADS)

Healy, D. A.; Huffman, J. A.; O'Connor, D. J.; Pöhlker, C.; Pöschl, U.; Sodeau, J. R.

2014-02-01

Primary biological aerosol particles (PBAP) can contribute significantly to the coarse particle burden in many environments, may thus influence climate and precipitation systems as cloud nuclei, and can spread disease to humans, animals, and plants. Measurements of PBAP in natural environments taken at high time- and size- resolution are, however, sparse and so large uncertainties remain in the role that biological particles play in the Earth system. In this study two commercial real-time fluorescence particle sensors and a Sporewatch single-stage particle impactor were operated continuously from 2 August to 2 September 2010 at a rural sampling location in Killarney National Park in south western Ireland. A cascade impactor was operated periodically to collect size-resolved particles during exemplary periods. Here we report the first ambient comparison of the waveband integrated bioaerosol sensor (WIBS-4) with the ultraviolet aerodynamic particle sizer (UV-APS) and also compare these real-time fluorescence techniques with results of fluorescence and optical microscopy of impacted samples. Both real-time instruments showed qualitatively similar behaviour, with increased fluorescent bioparticle concentrations at night when relative humidity was highest and temperature was lowest. The fluorescent particle number from the FL3 channel of the WIBS-4 and from the UV-APS were strongly correlated and dominated by a 3 μm mode in the particle size distribution. The WIBS FL2 channel exhibited particle modes at approx. 1 and 3 μm, and each were correlated with the concentration of fungal spores commonly observed in air samples collected at the site (ascospores, basidiospores, Ganoderma spp.). The WIBS FL1 channel exhibited variable multi-modal distributions turning into a broad featureless single mode after averaging and exhibited poor correlation with fungal spore concentrations, which may be due to the detection of bacterial and non-biological fluorescent particles. Cladosporium spp., which are among the most abundant fungal spores in many terrestrial environments, were not correlated with any of the real-time fluorescence channels, suggesting that the real-time fluorescence instruments are insensitive to PBAP classes with dark, highly absorptive cell walls. Fluorescence microscopy images of cascade impactor plates showed large numbers of coarse mode particles consistent with the morphology and weak fluorescence expected of sea salt. Some of these particles were attached to biological cells, suggesting that a marine source influenced the PBAP observed at the site and that the ocean may be an important contributor to PBAP loadings in coastal environments.

Investigation of protein folding by coarse-grained molecular dynamics with the UNRES force field.

PubMed

Maisuradze, Gia G; Senet, Patrick; Czaplewski, Cezary; Liwo, Adam; Scheraga, Harold A

2010-04-08

Coarse-grained molecular dynamics simulations offer a dramatic extension of the time-scale of simulations compared to all-atom approaches. In this article, we describe the use of the physics-based united-residue (UNRES) force field, developed in our laboratory, in protein-structure simulations. We demonstrate that this force field offers about a 4000-times extension of the simulation time scale; this feature arises both from averaging out the fast-moving degrees of freedom and reduction of the cost of energy and force calculations compared to all-atom approaches with explicit solvent. With massively parallel computers, microsecond folding simulation times of proteins containing about 1000 residues can be obtained in days. A straightforward application of canonical UNRES/MD simulations, demonstrated with the example of the N-terminal part of the B-domain of staphylococcal protein A (PDB code: 1BDD, a three-alpha-helix bundle), discerns the folding mechanism and determines kinetic parameters by parallel simulations of several hundred or more trajectories. Use of generalized-ensemble techniques, of which the multiplexed replica exchange method proved to be the most effective, enables us to compute thermodynamics of folding and carry out fully physics-based prediction of protein structure, in which the predicted structure is determined as a mean over the most populated ensemble below the folding-transition temperature. By using principal component analysis of the UNRES folding trajectories of the formin-binding protein WW domain (PDB code: 1E0L; a three-stranded antiparallel beta-sheet) and 1BDD, we identified representative structures along the folding pathways and demonstrated that only a few (low-indexed) principal components can capture the main structural features of a protein-folding trajectory; the potentials of mean force calculated along these essential modes exhibit multiple minima, as opposed to those along the remaining modes that are unimodal. In addition, a comparison between the structures that are representative of the minima in the free-energy profile along the essential collective coordinates of protein folding (computed by principal component analysis) and the free-energy profile projected along the virtual-bond dihedral angles gamma of the backbone revealed the key residues involved in the transitions between the different basins of the folding free-energy profile, in agreement with existing experimental data for 1E0L .

Effect of dietary fiber and diet particle size on nutrient digestibility and gastrointestinal secretory function in growing pigs.

PubMed

Saqui-Salces, M; Luo, Z; Urriola, P E; Kerr, B J; Shurson, G C

2017-06-01

Reduction of diet particle size (PS) increases feed efficiency due to an increase in the apparent total tract (ATTD) of GE. However, other effects of PS on the gut secretory function are not known. Therefore, the objective of this experiment was to measure the effect of diet composition (DC) and PS on nutrient digestibility, gastrointestinal hormones, total bile acids (TBA), total cholesterol and glucose concentrations in plasma of finishing pigs ( = 8/diet). Pigs were fed finely (374 ± 29 µm) or coarsely (631 ± 35 µm) ground corn-soybean meal (CSB), CSB + 35% corn dried distillers' grains with solubles (DDGS), and CSB with 21% soybean hulls (SBH) diets for 49 d. Diet composition, nutrient digestibility, along with fasting plasma concentrations of gastrin, insulin, glucagon-like peptide-1 (GLP-1), glucose-dependent insulinotropic peptide (GIP), TBA, cholesterol, and glucose were measured. Fine ground diets had greater ( < 0.05) ATTD of GE as well as greater ( < 0.05) ME than coarse ground diets independent on the DC. Fine ground diets also had greater ( < 0.05) ATTD of DM, N, ether extract, and NDF, independent of DC. A decrease in PS also caused an increase ( < 0.05) in ATTD of N, K, and S, but it did not affect ATTD of Ca, P, or Na. The DC and PS affected plasma gastrin, insulin and TBA but not GIP, GLP-1, glucose, and cholesterol. Gastrin concentration was greater ( < 0.05) in pigs fed coarse DDGS compared with feeding coarse CSB and SBH diets. Insulin concentration of pigs fed CSB was greater ( < 0.01) in pigs fed fine compared with coarse DDGS, and was greater ( < 0.05) in coarse compared with fine SBH diets. Pigs fed DDGS had greater ( < 0.05) TBA than those fed SBH and fine CSB diets. Gastrin, insulin, TBA and cholesterol tended ( < 0.10), or correlated ( < 0.05) with P, K and Fe intake. Insulin, TBA, and cholesterol were correlated ( < 0.05) with Na and S intake. In conclusion, a decrease in diet PS increases the ATTD of nutrients independently of DC, while mineral intake affects gastrointestinal secretion of hormones with potential metabolic impacts. Plasma insulin and glucose concentrations were correlated with DM intake, and glucose was associated with lipid and protein intake. Diet energy, nutrient digestibility, and plasma gastrin, insulin and TBA concentrations were affected by DC and PS.

Intermittent particle distribution in synthetic free-surface turbulent flows.

PubMed

Ducasse, Lauris; Pumir, Alain

2008-06-01

Tracer particles on the surface of a turbulent flow have a very intermittent distribution. This preferential concentration effect is studied in a two-dimensional synthetic compressible flow, both in the inertial (self-similar) and in the dissipative (smooth) range of scales, as a function of the compressibility C . The second moment of the concentration coarse grained over a scale r , n_{r};{2} , behaves as a power law in both the inertial and the dissipative ranges of scale, with two different exponents. The shapes of the probability distribution functions of the coarse-grained density n_{r} vary as a function of scale r and of compressibility C through the combination C/r;{kappa} (kappa approximately 0.5) , corresponding to the compressibility, coarse grained over a domain of scale r , averaged over Lagrangian trajectories.

Enhancing the Electrochemical Behavior of Pure Copper by Cyclic Potentiodynamic Passivation: A Comparison between Coarse- and Nano-Grained Pure Copper

NASA Astrophysics Data System (ADS)

Fattah-alhosseini, Arash; Imantalab, Omid; Attarzadeh, Farid Reza

2016-10-01

Electrochemical behavior of coarse- and nano-grained pure copper were modified and improved to a large extent by the application of cyclic potentiodynamic passivation. The efficacy of this method was evaluated on the basis of grain size which is of great importance in corrosion studies. In this study, the eight passes of accumulative roll bonding process at room temperature were successfully performed to produce nano-grained pure copper. Transmission electron microscopy image indicated that the average grain size reached below 100 nm after eight passes. On the basis of cyclic voltammetry and also the electrochemical tests performed after that, it was revealed that cyclic potentiodynamic passivation had a significant improving effect on the passive behavior of both coarse- and nano-grained samples. In addition, a superior behavior of nano-grained sample in comparison to coarse-grained one was distinguished by its smaller cyclic voltammogram loops, nobler free potentials, larger capacitive arcs in the Nyquist plots, and less charge carrier densities within the passive film.

Optimal Parameter Design of Coarse Alignment for Fiber Optic Gyro Inertial Navigation System.

PubMed

Lu, Baofeng; Wang, Qiuying; Yu, Chunmei; Gao, Wei

2015-06-25

Two different coarse alignment algorithms for Fiber Optic Gyro (FOG) Inertial Navigation System (INS) based on inertial reference frame are discussed in this paper. Both of them are based on gravity vector integration, therefore, the performance of these algorithms is determined by integration time. In previous works, integration time is selected by experience. In order to give a criterion for the selection process, and make the selection of the integration time more accurate, optimal parameter design of these algorithms for FOG INS is performed in this paper. The design process is accomplished based on the analysis of the error characteristics of these two coarse alignment algorithms. Moreover, this analysis and optimal parameter design allow us to make an adequate selection of the most accurate algorithm for FOG INS according to the actual operational conditions. The analysis and simulation results show that the parameter provided by this work is the optimal value, and indicate that in different operational conditions, the coarse alignment algorithms adopted for FOG INS are different in order to achieve better performance. Lastly, the experiment results validate the effectiveness of the proposed algorithm.

Bioremoval of trivalent chromium using Bacillus biofilms through continuous flow reactor.

PubMed

Sundar, K; Sadiq, I Mohammed; Mukherjee, Amitava; Chandrasekaran, N

2011-11-30

Present study deals with the applicability of bacterial biofilms for the bioremoval of trivalent chromium from tannery effluents. A continuous flow reactor was designed for the development of biofilms on different substrates like glass beads, pebbles and coarse sand. The parameters for the continuous flow reactor were 20 ml/min flow rate at 30°C, pH4. Biofilm biomass on the substrates was in the following sequence: coarse sand>pebbles>glass beads (4.8 × 10(7), 4.5 × 10(7) and 3.5 × 10(5)CFU/cm(2)), which was confirmed by CLSM. Biofilms developed using consortium of Bacillus subtilis and Bacillus cereus on coarse sand had more surface area and was able to remove 98% of Cr(III), SEM-EDX proved 92.60% Cr(III) adsorption on biofilms supported by coarse sand. Utilization of Bacillus biofilms for effective bioremoval of Cr(III) from chrome tanning effluent could be a better option for tannery industry, especially during post chrome tanning operation. Copyright © 2011 Elsevier B.V. All rights reserved.

Systematic and simulation-free coarse graining of homopolymer melts: a relative-entropy-based study.

PubMed

Yang, Delian; Wang, Qiang

2015-09-28

We applied the systematic and simulation-free strategy proposed in our previous work (D. Yang and Q. Wang, J. Chem. Phys., 2015, 142, 054905) to the relative-entropy-based (RE-based) coarse graining of homopolymer melts. RE-based coarse graining provides a quantitative measure of the coarse-graining performance and can be used to select the appropriate analytic functional forms of the pair potentials between coarse-grained (CG) segments, which are more convenient to use than the tabulated (numerical) CG potentials obtained from structure-based coarse graining. In our general coarse-graining strategy for homopolymer melts using the RE framework proposed here, the bonding and non-bonded CG potentials are coupled and need to be solved simultaneously. Taking the hard-core Gaussian thread model (K. S. Schweizer and J. G. Curro, Chem. Phys., 1990, 149, 105) as the original system, we performed RE-based coarse graining using the polymer reference interaction site model theory under the assumption that the intrachain segment pair correlation functions of CG systems are the same as those in the original system, which de-couples the bonding and non-bonded CG potentials and simplifies our calculations (that is, we only calculated the latter). We compared the performance of various analytic functional forms of non-bonded CG pair potential and closures for CG systems in RE-based coarse graining, as well as the structural and thermodynamic properties of original and CG systems at various coarse-graining levels. Our results obtained from RE-based coarse graining are also compared with those from structure-based coarse graining.

New Aerosol Models for the Retrieval of Aerosol Optical Thickness and Normalized Water-Leaving Radiances from the SeaWiFS and MODIS Sensors Over Coastal Regions and Open Oceans

NASA Technical Reports Server (NTRS)

Ahmad, Ziauddin; Franz, Bryan A.; McClain, Charles R.; Kwiatkowska, Ewa J.; Werdell, Jeremy; Shettle, Eric P.; Holben, Brent N.

2010-01-01

We describe the development of a new suite of aerosol models for the retrieval of atmospheric and oceanic optical properties from the SeaWiFs and MODIS sensors, including aerosol optical thickness (tau), angstrom coefficient (alpha), and water-leaving radiance (L(sub w)). The new aerosol models are derived from Aerosol Robotic Network (AERONET) observations and have bimodal lognormal distributions that are narrower than previous models used by the Ocean Biology Processing Group. We analyzed AERONET data over open ocean and coastal regions and found that the seasonal variability in the modal radii, particularly in the coastal region, was related to the relative humidity, These findings were incorporated into the models by making the modal radii, as well as the refractive indices, explicitly dependent on relative humidity, From those findings, we constructed a new suite of aerosol models. We considered eight relative humidity values (30%, 50%, 70%, 75%, 80%, 85%, 90%. and 95%) and, for each relative humidity value, we constructed ten distributions by varying the fine-mode fraction from zero to 1. In all. 80 distributions (8Rh x 10 fine-mode fractions) were created to process the satellite data. We. also assumed that the coarse-mode particles were nonabsorbing (sea salt) and that all observed absorptions were entirely due to fine-mode particles. The composition of fine mode was varied to ensure that the new models exhibited the same spectral dependence of single scattering albedo as observed in the AERONET data,

Characterization of microstructure of A508III/309L/308L weld and oxide films formed in deaerated high-temperature water

NASA Astrophysics Data System (ADS)

Xiong, Qi; Li, Hongjuan; Lu, Zhanpeng; Chen, Junjie; Xiao, Qian; Ma, Jiarong; Ru, Xiangkun

2018-01-01

The microstructure of A508III/309L/308L weld clad and the properties of the oxide films formed in simulated pressurized water reactor primary water at 290 °C were characterized. The A508III heat-affected zone (HAZ) consisted primarily of a decarburization zone with ferrite near the fusion line and a following pearlite structure with fine grains. A high hardness region in the HAZ could be the result of C-enrichment. M23C6 and M7C3 precipitates were observed in element transition zone. 308L stainless steel (SS) containing ∼ 12% ferrites exhibited both ferritic-austenitic solidification mode (FA mode, δ→γ) and austenitic-ferritic solidification mode (AF mode, γ→δ), whereas 309L SS containing ∼ 9% ferrites exhibited only FA mode. The A508III surface oxide film was mainly Fe3O4 in deaerated high-temperature water. The coarse grain zone covered with few oxide particles was different from other types of film on the other region of HAZ and the bulk zone. More pitting appears on 309L SS after immersion in deaerated high-temperature water due to the dissolution of inclusions. SS surface oxide films consisted primarily of spinels. The oxide film on SS was divided into two layers. Ni was concentrated mainly at the oxide/substrate interface. The oxide film formed on 309L was thicker than that on the 308L. The ferrite in the stainless steel could improve the oxidation resistance.

Experimental and modeling study of chloride ingress into concrete and reinforcement corrosion initiation

NASA Astrophysics Data System (ADS)

Yu, Hui

Effects of reinforcement and coarse aggregate on chloride ingression into concrete and reinforcement corrosion initiation have been studied with experimental and modeling (finite element method) analyses. Once specimens were fabricated and exposed to a chloride solution, various experimental techniques were employed to determine the effect of reinforcement and coarse aggregate on time-to-corrosion and chloride ingress and concentration at corrosion locations. Model analyses were performed to verify and explain the experimental results. Based upon the results, it was determined that unexpectedly higher chloride concentrations were present on the top of the rebar trace than that to the side at the same depth and an inverse concentration gradient (increasing [ Cl-] with increasing depth) occurred near the top of rebars. Also, coarse aggregate volume profile in close proximity to the rebar and spatial distribution of these aggregates, in conjunction with the physical obstruction afforded by reinforcement to chloride flow, complicates concrete sampling for Cl- intended to define the critical concentration of this species to initiate corrosion. Modeling analyses that considered cover thickness, chloride threshold concentration, reinforcement size and shape, and coarse aggregate type and percolation confirmed the experimental findings. The results, at least in part, account for the relatively wide spread in chloride corrosion threshold values reported in the literature and illustrate that more consistent chloride threshold concentrations can be acquired from mortar or paste specimens than from concrete ones.

A Modeling Approach to Global Land Surface Monitoring with Low Resolution Satellite Imaging

NASA Technical Reports Server (NTRS)

Hlavka, Christine A.; Dungan, Jennifer; Livingston, Gerry P.; Gore, Warren J. (Technical Monitor)

1998-01-01

The effects of changing land use/land cover on global climate and ecosystems due to greenhouse gas emissions and changing energy and nutrient exchange rates are being addressed by federal programs such as NASA's Mission to Planet Earth (MTPE) and by international efforts such as the International Geosphere-Biosphere Program (IGBP). The quantification of these effects depends on accurate estimates of the global extent of critical land cover types such as fire scars in tropical savannas and ponds in Arctic tundra. To address the requirement for accurate areal estimates, methods for producing regional to global maps with satellite imagery are being developed. The only practical way to produce maps over large regions of the globe is with data of coarse spatial resolution, such as Advanced Very High Resolution Radiometer (AVHRR) weather satellite imagery at 1.1 km resolution or European Remote-Sensing Satellite (ERS) radar imagery at 100 m resolution. The accuracy of pixel counts as areal estimates is in doubt, especially for highly fragmented cover types such as fire scars and ponds. Efforts to improve areal estimates from coarse resolution maps have involved regression of apparent area from coarse data versus that from fine resolution in sample areas, but it has proven difficult to acquire sufficient fine scale data to develop the regression. A method for computing accurate estimates from coarse resolution maps using little or no fine data is therefore needed.

Effect of Composition and Deformation on Coarse-Grained Austenite Transformation in Nb-Mo Microalloyed Steels

NASA Astrophysics Data System (ADS)

Isasti, N.; Jorge-Badiola, D.; Taheri, M. L.; López, B.; Uranga, P.

2011-12-01

Thermomechanical processing of microalloyed steels containing niobium can be performed to obtain deformed austenite prior to transformation. Accelerated cooling can be employed to refine the final microstructure and, consequently, to improve both strength and toughness. This general rule is fulfilled if the transformation occurs on a quite homogeneous austenite microstructure. Nevertheless, the presence of coarse austenite grains before transformation in different industrial processes is a usual source of concern, and regarding toughness, the coarsest high-angle boundary units would determine its final value. Sets of deformation dilatometry tests were carried out using three 0.06 pct Nb microalloyed steels to evaluate the effect of Mo alloying additions (0, 0.16, and 0.31 pct Mo) on final transformation from both recrystallized and unrecrystallized coarse-grained austenite. Continuous cooling transformation (CCT) diagrams were created, and detailed microstructural characterization was achieved through the use of optical microscopy (OM), field emission gun scanning electron microscopy (FEGSEM), and electron backscattered diffraction (EBSD). The resultant microstructures ranged from polygonal ferrite (PF) and pearlite (P) at slow cooling ranges to bainitic ferrite (BF) accompanied by martensite (M) for fast cooling rates. Plastic deformation of the parent austenite accelerated both ferrite and bainite transformation, moving the CCT curves to higher temperatures and shorter times. However, an increase in the final heterogeneity was observed when BF packets were formed, creating coarse high-angle grain boundary units.

3D Microstructure Effects in Ni-YSZ Anodes: Influence of TPB Lengths on the Electrochemical Performance.

PubMed

Pecho, Omar M; Mai, Andreas; Münch, Beat; Hocker, Thomas; Flatt, Robert J; Holzer, Lorenz

2015-10-21

3D microstructure-performance relationships in Ni-YSZ anodes for electrolyte-supported cells are investigated in terms of the correlation between the triple phase boundary (TPB) length and polarization resistance ( R pol ). Three different Ni-YSZ anodes of varying microstructure are subjected to eight reduction-oxidation (redox) cycles at 950 °C. In general the TPB lengths correlate with anode performance . However, the quantitative results also show that there is no simplistic relationship between TPB and R pol . The degradation mechanism strongly depends on the initial microstructure. Finer microstructures exhibit lower degradation rates of TPB and R pol . In fine microstructures, TPB loss is found to be due to Ni coarsening, while in coarse microstructures reduction of active TPB results mainly from loss of YSZ percolation. The latter is attributed to weak bottlenecks associated with lower sintering activity of the coarse YSZ. The coarse anode suffers from complete loss of YSZ connectivity and associated drop of TPB active by 93%. Surprisingly, this severe microstructure degradation did not lead to electrochemical failure. Mechanistic scenarios are discussed for different anode microstructures. These scenarios are based on a model for coupled charge transfer and transport, which allows using TPB and effective properties as input. The mechanistic scenarios describe the microstructure influence on current distributions, which explains the observed complex relationship between TPB lengths and anode performances. The observed loss of YSZ percolation in the coarse anode is not detrimental because the electrochemical activity is concentrated in a narrow active layer. The anode performance can be predicted reliably if the volume-averaged properties (TPB active , effective ionic conductivity) are corrected for the so-called short-range effect, which is particularly important in cases with a narrow active layer.

Effects of Coarse Legacy Sediment on Rivers of the Ozark Plateaus and Implications for Native Mussel Fauna

NASA Astrophysics Data System (ADS)

Erwin, S. O.; Jacobson, R. B.; Eric, A. B.; Jones, J. C.; Anderson, B. W.

2015-12-01

Perturbations to sediment regimes due to anthropogenic activities may have long lasting effects, especially in systems dominated by coarse sediment where travel times are relatively long. Effectively evaluating management alternatives requires understanding the future trajectory of river response at both the river network and reach scales. The Ozark Plateaus physiographic province is a montane region in the interior US composed primarily of Paleozoic sedimentary rock. Historic land-use practices around the turn of the last century accelerated delivery of coarse sediment to river channels. Effects of this legacy sediment persist in two national parks, Ozark National Scenic Riverways, MO and Buffalo National River, AR, and are of special concern for management of native mussel fauna. These species require stable habitat, yet they occupy inherently dynamic environments: alluvial rivers. At the river-network scale, analysis of historical data reveals the signature of sediment waves moving through river networks in the Ozarks. Channel planform alternates between relatively stable, straight reaches, and wider, multithread reaches which have been more dynamic over the past several decades. These alternate planform configurations route and store sediment differently, and translate into different patterns of bed stability at the reach scale, which in turn affects the distribution and availability of habitat for native biota. Geomorphic mapping and hydrodynamic modeling reveal the complex relations between planform (in)stability, flow dynamics, bed mobility, and aquatic habitat in systems responding to increased sediment supply. Reaches that have a more dynamic planform may provide more hydraulic refugia and habitat heterogeneity compared to stable, homogeneous reaches. This research provides new insights that may inform management of sediment and mussel habitat in rivers subject to coarse legacy sediment.

3D Microstructure Effects in Ni-YSZ Anodes: Influence of TPB Lengths on the Electrochemical Performance

PubMed Central

Pecho, Omar M.; Mai, Andreas; Münch, Beat; Hocker, Thomas; Flatt, Robert J.; Holzer, Lorenz

2015-01-01

3D microstructure-performance relationships in Ni-YSZ anodes for electrolyte-supported cells are investigated in terms of the correlation between the triple phase boundary (TPB) length and polarization resistance (Rpol). Three different Ni-YSZ anodes of varying microstructure are subjected to eight reduction-oxidation (redox) cycles at 950 °C. In general the TPB lengths correlate with anode performance. However, the quantitative results also show that there is no simplistic relationship between TPB and Rpol. The degradation mechanism strongly depends on the initial microstructure. Finer microstructures exhibit lower degradation rates of TPB and Rpol. In fine microstructures, TPB loss is found to be due to Ni coarsening, while in coarse microstructures reduction of active TPB results mainly from loss of YSZ percolation. The latter is attributed to weak bottlenecks associated with lower sintering activity of the coarse YSZ. The coarse anode suffers from complete loss of YSZ connectivity and associated drop of TPBactive by 93%. Surprisingly, this severe microstructure degradation did not lead to electrochemical failure. Mechanistic scenarios are discussed for different anode microstructures. These scenarios are based on a model for coupled charge transfer and transport, which allows using TPB and effective properties as input. The mechanistic scenarios describe the microstructure influence on current distributions, which explains the observed complex relationship between TPB lengths and anode performances. The observed loss of YSZ percolation in the coarse anode is not detrimental because the electrochemical activity is concentrated in a narrow active layer. The anode performance can be predicted reliably if the volume-averaged properties (TPBactive, effective ionic conductivity) are corrected for the so-called short-range effect, which is particularly important in cases with a narrow active layer. PMID:28793624

Effects of microstructure on inverse fracture occurring during drop-weight tear testing of high-toughness X70 pipeline steels

NASA Astrophysics Data System (ADS)

Hwang, Byoungchul; Kim, Yang Gon; Lee, Sunghak; Kim, Nack J.; Yoo, Jang Yong

2005-02-01

The effects of microstructure on inverse fracture occurring in the hammer-impacted region were analyzed after conducting a drop-weight tear test (DWTT) on high-toughness pipeline steels. Three kinds of steels were fabricated by varying the alloying elements, and their microstructures were varied by the rolling conditions. The pressed-notch (PN) or chevron-notch (CN) DWTT and Charpy V-notch (CVN) impact tests were conducted on the rolled steel specimens, and the results were discussed in comparison with the data obtained from CVN tests of prestrained specimens. In the hammer-impacted region of the DWTT specimens, abnormal inverse fracture having a cleavage fracture mode appeared, and the inverse fracture area correlated well with the upper-shelf energy (USE) obtained from the CVN test and with the grain size. The steel specimens having a higher USE or having coarse polygonal ferrite tended to have a larger inverse fracture area than those having a lower USE or having fine acicular ferrite. This was because steels having a higher impact absorption energy required higher energy for fracture initiation and propagation during the DWTT. These results were confirmed by the CVN data of prestrained steel specimens.

The Effect of Ca Content on the Microstructure, Hardness and Tensile Properties of AZ81 Mg Cast Alloy

NASA Astrophysics Data System (ADS)

Allameh, S. H.; Emamy, M.

2017-05-01

The effects of various Ca contents (0.1-4 wt.%) on the microstructure and tensile properties of AZ81 magnesium alloy were investigated with the contribution of an analytical method. Ca addition (up to 1.0 wt.%) refined the alloy microstructure but further addition of Ca resulted in a coarse structure and introduced large dendrites within the grains. The changes in the microstructures revealed that Al4Ca, Al2Ca, τ-Mg32(A1,Zn)49 and ɛ-MgZn intermetallics are formed in the alloy as a result of Ca addition and Al consumption. The assessment of tensile properties of AZ81-1.0 wt.%Ca alloy showed the optimum values of yield strength and ultimate tensile strength, while AZ81-0.7 wt.%Ca alloy showed maximum elongation. The reduction in tensile properties of the cast alloy by the addition of more Ca was attributed to grain coarsening and evolution of a network of intermetallic compounds. FF study of tensile fractured surfaces indicated that Ca addition encourages brittle mode of fracture propagating through precipitated intermetallics in the structure.

Sediment transport in the Snake and Clearwater rivers in the vicinity of Lewiston, Idaho

USGS Publications Warehouse

Jones, Michael L.; Seitz, Harold R.

1980-01-01

During the period 1972-79, the bedload in the Clearwater River ranged from about 50,000 tons (45,000 metric tons) per year in 1972 and 1974 to about 1,000 tons (910 metric tons) per year in the drought years of 1973 and 1977. Suspended-sediment load at the same location ranged from about 1,000,000 tons (910,000 metric tons) per year to about 50,000 tons (45,000 metric tons) per year for the same respective years. In the Snake River, bedload ranged from about 200,000 tons (180,000 metric tons) per year for 1972 and 1974 to about 10,000 tons (9,100 metric tons) per year in 1973; bedload was too low for determination in 1977. Suspended-sediment load ranged from about 5,000,000 tons (4,500,000 metric tons) per year in 1974 to about 50,000 tons (45,000 metric tons) per year in 1977. Bedload thus ranged from about 2 to 10 percent of suspended load and average about 5 percent. For either river, bedload particle size was bimodal. Modes were in the medium- to coarse-sand range and in the very coarse-gravel range. Suspended-sediment particle size was generally finer than sand.

Primary and secondary dimer interfaces of the fibroblast growth factor receptor 3 transmembrane domain: characterization via multiscale molecular dynamics simulations.

PubMed

Reddy, Tyler; Manrique, Santiago; Buyan, Amanda; Hall, Benjamin A; Chetwynd, Alan; Sansom, Mark S P

2014-01-21

Receptor tyrosine kinases are single-pass membrane proteins that form dimers within the membrane. The interactions of their transmembrane domains (TMDs) play a key role in dimerization and signaling. Fibroblast growth factor receptor 3 (FGFR3) is of interest as a G380R mutation in its TMD is the underlying cause of ~99% of the cases of achondroplasia, the most common form of human dwarfism. The structural consequences of this mutation remain uncertain: the mutation shifts the position of the TMD relative to the lipid bilayer but does not alter the association free energy. We have combined coarse-grained and all-atom molecular dynamics simulations to study the dimerization of wild-type, heterodimer, and mutant FGFR3 TMDs. The simulations reveal that the helices pack together in the dimer to form a flexible interface. The primary packing mode is mediated by a Gx3G motif. There is also a secondary dimer interface that is more highly populated in heterodimer and mutant configurations that may feature in the molecular mechanism of pathology. Both coarse-grained and atomistic simulations reveal a significant shift of the G380R mutant dimer TMD relative to the bilayer to allow interactions of the arginine side chain with lipid headgroup phosphates.

Primary and Secondary Dimer Interfaces of the FGFR3 Transmembrane Domain: Characterization via Multiscale Molecular Dynamics Simulations

PubMed Central

Reddy, Tyler; Manrique, Santiago; Buyan, Amanda; Hall, Benjamin A.; Chetwynd, Alan; Sansom, Mark S.P.

2016-01-01

Receptor tyrosine kinases are single pass membrane proteins which form dimers within the membrane. The interactions of their transmembrane domains (TMDs) play a key role in dimerization and signaling. The fibroblast growth factor receptor 3 (FGFR3) is of interest as a G380R mutation in its TMD is the underlying cause of ~99% of cases of achondroplasia, the most common form of human dwarfism. The structural consequences of this mutation remain uncertain: the mutation shifts the position relative of the TMD relative to the lipid bilayer but does not alter the association free energy. We have combined coarse-grained and all-atom molecular dynamics simulations to study the dimerization of wild-type, heterodimer, and mutant FGFR3 TMDs. The simulations reveal that the helices pack together in the dimer to form a flexible interface. The primary packing mode is mediated by a Gx3G motif. There is also a secondary dimer interface which is more highly populated in heterodimer and mutant configurations which may feature in the molecular mechanism of pathology. Both coarse-grained and atomistic simulations reveal a significant shift of the G380R mutant dimer TMD relative to the bilayer so as to enable interactions of the arginine sidechain with lipid head group phosphates. PMID:24397339

Lidar-Radiometer Inversion Code (LIRIC) for the Retrieval of Vertical Aerosol Properties from Combined Lidar Radiometer Data: Development and Distribution in EARLINET

NASA Technical Reports Server (NTRS)

Chaikovsky, A.; Dubovik, O.; Holben, Brent N.; Bril, A.; Goloub, P.; Tanre, D.; Pappalardo, G.; Wandinger, U.; Chaikovskaya, L.; Denisov, S.;

Coarse-Grained Clustering Dynamics of Heterogeneously Coupled Neurons.

PubMed

Moon, Sung Joon; Cook, Katherine A; Rajendran, Karthikeyan; Kevrekidis, Ioannis G; Cisternas, Jaime; Laing, Carlo R

2015-12-01

The formation of oscillating phase clusters in a network of identical Hodgkin-Huxley neurons is studied, along with their dynamic behavior. The neurons are synaptically coupled in an all-to-all manner, yet the synaptic coupling characteristic time is heterogeneous across the connections. In a network of N neurons where this heterogeneity is characterized by a prescribed random variable, the oscillatory single-cluster state can transition-through [Formula: see text] (possibly perturbed) period-doubling and subsequent bifurcations-to a variety of multiple-cluster states. The clustering dynamic behavior is computationally studied both at the detailed and the coarse-grained levels, and a numerical approach that can enable studying the coarse-grained dynamics in a network of arbitrarily large size is suggested. Among a number of cluster states formed, double clusters, composed of nearly equal sub-network sizes are seen to be stable; interestingly, the heterogeneity parameter in each of the double-cluster components tends to be consistent with the random variable over the entire network: Given a double-cluster state, permuting the dynamical variables of the neurons can lead to a combinatorially large number of different, yet similar "fine" states that appear practically identical at the coarse-grained level. For weak heterogeneity we find that correlations rapidly develop, within each cluster, between the neuron's "identity" (its own value of the heterogeneity parameter) and its dynamical state. For single- and double-cluster states we demonstrate an effective coarse-graining approach that uses the Polynomial Chaos expansion to succinctly describe the dynamics by these quickly established "identity-state" correlations. This coarse-graining approach is utilized, within the equation-free framework, to perform efficient computations of the neuron ensemble dynamics.

Texture coarseness responsive neurons and their mapping in layer 2–3 of the rat barrel cortex in vivo

PubMed Central

Garion, Liora; Dubin, Uri; Rubin, Yoav; Khateb, Mohamed; Schiller, Yitzhak; Azouz, Rony; Schiller, Jackie

2014-01-01

Texture discrimination is a fundamental function of somatosensory systems, yet the manner by which texture is coded and spatially represented in the barrel cortex are largely unknown. Using in vivo two-photon calcium imaging in the rat barrel cortex during artificial whisking against different surface coarseness or controlled passive whisker vibrations simulating different coarseness, we show that layer 2–3 neurons within barrel boundaries differentially respond to specific texture coarsenesses, while only a minority of neurons responded monotonically with increased or decreased surface coarseness. Neurons with similar preferred texture coarseness were spatially clustered. Multi-contact single unit recordings showed a vertical columnar organization of texture coarseness preference in layer 2–3. These findings indicate that layer 2–3 neurons perform high hierarchical processing of tactile information, with surface coarseness embodied by distinct neuronal subpopulations that are spatially mapped onto the barrel cortex. DOI: http://dx.doi.org/10.7554/eLife.03405.001 PMID:25233151

Anharmonic Normal Mode Analysis of Elastic Network Model Improves the Modeling of Atomic Fluctuations in Protein Crystal Structures

PubMed Central

Zheng, Wenjun

2010-01-01

Abstract Protein conformational dynamics, despite its significant anharmonicity, has been widely explored by normal mode analysis (NMA) based on atomic or coarse-grained potential functions. To account for the anharmonic aspects of protein dynamics, this study proposes, and has performed, an anharmonic NMA (ANMA) based on the Cα-only elastic network models, which assume elastic interactions between pairs of residues whose Cα atoms or heavy atoms are within a cutoff distance. The key step of ANMA is to sample an anharmonic potential function along the directions of eigenvectors of the lowest normal modes to determine the mean-squared fluctuations along these directions. ANMA was evaluated based on the modeling of anisotropic displacement parameters (ADPs) from a list of 83 high-resolution protein crystal structures. Significant improvement was found in the modeling of ADPs by ANMA compared with standard NMA. Further improvement in the modeling of ADPs is attained if the interactions between a protein and its crystalline environment are taken into account. In addition, this study has determined the optimal cutoff distances for ADP modeling based on elastic network models, and these agree well with the peaks of the statistical distributions of distances between Cα atoms or heavy atoms derived from a large set of protein crystal structures. PMID:20550915

Design and Test of a Hybrid Foot Force Sensing and GPS System for Richer User Mobility Activity Recognition

PubMed Central

Zhang, Zelun; Poslad, Stefan

2013-01-01

Wearable and accompanied sensors and devices are increasingly being used for user activity recognition. However, typical GPS-based and accelerometer-based (ACC) methods face three main challenges: a low recognition accuracy; a coarse recognition capability, i.e., they cannot recognise both human posture (during travelling) and transportation mode simultaneously, and a relatively high computational complexity. Here, a new GPS and Foot-Force (GPS + FF) sensor method is proposed to overcome these challenges that leverages a set of wearable FF sensors in combination with GPS, e.g., in a mobile phone. User mobility activities that can be recognised include both daily user postures and common transportation modes: sitting, standing, walking, cycling, bus passenger, car passenger (including private cars and taxis) and car driver. The novelty of this work is that our approach provides a more comprehensive recognition capability in terms of reliably recognising both human posture and transportation mode simultaneously during travel. In addition, by comparing the new GPS + FF method with both an ACC method (62% accuracy) and a GPS + ACC based method (70% accuracy) as baseline methods, it obtains a higher accuracy (95%) with less computational complexity, when tested on a dataset obtained from ten individuals. PMID:24189333

A theory for protein dynamics: Global anisotropy and a normal mode approach to local complexity

NASA Astrophysics Data System (ADS)

Copperman, Jeremy; Romano, Pablo; Guenza, Marina

2014-03-01

We propose a novel Langevin equation description for the dynamics of biological macromolecules by projecting the solvent and all atomic degrees of freedom onto a set of coarse-grained sites at the single residue level. We utilize a multi-scale approach where molecular dynamic simulations are performed to obtain equilibrium structural correlations input to a modified Rouse-Zimm description which can be solved analytically. The normal mode solution provides a minimal basis set to account for important properties of biological polymers such as the anisotropic global structure, and internal motion on a complex free-energy surface. This multi-scale modeling method predicts the dynamics of both global rotational diffusion and constrained internal motion from the picosecond to the nanosecond regime, and is quantitative when compared to both simulation trajectory and NMR relaxation times. Utilizing non-equilibrium sampling techniques and an explicit treatment of the free-energy barriers in the mode coordinates, the model is extended to include biologically important fluctuations in the microsecond regime, such as bubble and fork formation in nucleic acids, and protein domain motion. This work supported by the NSF under the Graduate STEM Fellows in K-12 Education (GK-12) program, grant DGE-0742540 and NSF grant DMR-0804145, computational support from XSEDE and ACISS.

Anomalous waterlike behavior in spherically-symmetric water models optimized with the relative entropy.

PubMed

Chaimovich, Aviel; Shell, M Scott

2009-03-28

Recent efforts have attempted to understand many of liquid water's anomalous properties in terms of effective spherically-symmetric pairwise molecular interactions entailing two characteristic length scales (so-called "core-softened" potentials). In this work, we examine the extent to which such simple descriptions of water are representative of the true underlying interactions by extracting coarse-grained potential functions that are optimized to reproduce the behavior of an all-atom model. To perform this optimization, we use a novel procedure based upon minimizing the relative entropy, a quantity that measures the extent to which a coarse-grained configurational ensemble overlaps with a reference all-atom one. We show that the optimized spherically-symmetric water models exhibit notable variations with the state conditions at which they were optimized, reflecting in particular the shifting accessibility of networked hydrogen bonding interactions. Moreover, we find that water's density and diffusivity anomalies are only reproduced when the effective coarse-grained potentials are allowed to vary with state. Our results therefore suggest that no state-independent spherically-symmetric potential can fully capture the interactions responsible for water's unique behavior; rather, the particular way in which the effective interactions vary with temperature and density contributes significantly to anomalous properties.

Transferable Coarse-Grained Models for Ionic Liquids.

PubMed

Wang, Yanting; Feng, Shulu; Voth, Gregory A

2009-04-14

The effective force coarse-graining (EF-CG) method was applied to the imidazolium-based nitrate ionic liquids with various alkyl side-chain lengths. The nonbonded EF-CG forces for the ionic liquid with a short side chain were extended to generate the nonbonded forces for the ionic liquids with longer side chains. The EF-CG force fields for the ionic liquids exhibit very good transferability between different systems at various temperatures and are suitable for investigating the mesoscopic structural properties of this class of ionic liquids. The good additivity and ease of manipulation of the EF-CG force fields can allow for an inverse design methodology of ionic liquids at the coarse-grained level. With the EF-CG force field, the molecular dynamics (MD) simulation at a very large scale has been performed to check the significance of finite size effects on the structural properties. From these MD simulation results, it can be concluded that the finite size effect on the phenomenon of ionic liquid spatial heterogeneity (Wang, Y.; Voth, G. A. J. Am. Chem. Soc. 2005, 127, 12192) is small and that this phenomenon is indeed a nanostructural behavior which leads to the experimentally observed mesoscopic heterogeneous structure of ionic liquids.

The decomposition of fine and coarse roots: their global patterns and controlling factors

PubMed Central

Zhang, Xinyue; Wang, Wei

2015-01-01

Fine root decomposition represents a large carbon (C) cost to plants, and serves as a potential soil C source, as well as a substantial proportion of net primary productivity. Coarse roots differ markedly from fine roots in morphology, nutrient concentrations, functions, and decomposition mechanisms. Still poorly understood is whether a consistent global pattern exists between the decomposition of fine (<2 mm root diameter) and coarse (≥2 mm) roots. A comprehensive terrestrial root decomposition dataset, including 530 observations from 71 sampling sites, was thus used to compare global patterns of decomposition of fine and coarse roots. Fine roots decomposed significantly faster than coarse roots in middle latitude areas, but their decomposition in low latitude regions was not significantly different from that of coarse roots. Coarse root decomposition showed more dependence on climate, especially mean annual temperature (MAT), than did fine roots. Initial litter lignin content was the most important predictor of fine root decomposition, while lignin to nitrogen ratios, MAT, and mean annual precipitation were the most important predictors of coarse root decomposition. Our study emphasizes the necessity of separating fine roots and coarse roots when predicting the response of belowground C release to future climate changes. PMID:25942391

Relationships between forest fine and coarse woody debris carbon stocks across latitudinal gradients in the United States as an indicator of climate change effects

Treesearch

C.W. Woodall; G.C. Liknes

2008-01-01

Coarse and fine woody materials (CWD and FWD) are substantial forest ecosystem carbon (C) stocks. There is a lack of understanding how these detritus C stocks may respond to climate change. This study used a nation-wide inventory of CWD and FWD in the United States to examine how these C stocks vary by latitude. Results indicate that the highest CWD and FWD C stocks...

In situ studies on radiation tolerance of nanotwinned Cu

DOE PAGES

Chen, Y.; Li, J.; Yu, K. Y.; ...

2016-03-31

We investigate the radiation response of nanotwinned Cu by using in situ Kr ion irradiation technique inside a transmission electron microscope. In comparison with coarse grained Cu, nanotwinned Cu exhibits smaller defect size and lower defect density. In situ studies also show that twin boundaries effectively remove a large number of defect clusters. The life time of defect clusters in nanotwinned Cu is very different from that in its coarse grained counterpart. This study provides further evidence on twin-boundary enabled radiation tolerance in nanotwinned metals.

Coarse Grid CFD for underresolved simulation

NASA Astrophysics Data System (ADS)

Class, Andreas G.; Viellieber, Mathias O.; Himmel, Steffen R.

2010-11-01

CFD simulation of the complete reactor core of a nuclear power plant requires exceedingly huge computational resources so that this crude power approach has not been pursued yet. The traditional approach is 1D subchannel analysis employing calibrated transport models. Coarse grid CFD is an attractive alternative technique based on strongly under-resolved CFD and the inviscid Euler equations. Obviously, using inviscid equations and coarse grids does not resolve all the physics requiring additional volumetric source terms modelling viscosity and other sub-grid effects. The source terms are implemented via correlations derived from fully resolved representative simulations which can be tabulated or computed on the fly. The technique is demonstrated for a Carnot diffusor and a wire-wrap fuel assembly [1]. [4pt] [1] Himmel, S.R. phd thesis, Stuttgart University, Germany 2009, http://bibliothek.fzk.de/zb/berichte/FZKA7468.pdf

Comparison of corrosion behavior between coarse grained and nano/ultrafine grained alloy 690

NASA Astrophysics Data System (ADS)

Jinlong, Lv; Tongxiang, Liang; Chen, Wang; Ting, Guo

2016-01-01

The effect of grain refinement on corrosion resistance of alloy 690 was investigated. The electron work function value of coarse grained alloy 690 was higher than that of nano/ultrafine grained one. The grain refinement reduced the electron work function of alloy 690. The passive films formed on coarse grained and nano/ultrafine grained alloy 690 in borate buffer solution were studied by potentiodynamic curves and electrochemical impedance spectroscopy and X-ray photoelectron spectroscopy. The results showed that the grain refinement improved corrosion resistance of alloy 690. This was attributed to the fact that grain refinement promoted the enrichment of Cr2O3 and inhibited Cr(OH)3 in the passive film. More Cr2O3 in passive film could significantly improve the corrosion resistance of the nano/ultrafine grained alloy 690.

Short-range, overpressure-driven methane migration in coarse-grained gas hydrate reservoirs

DOE PAGES

Nole, Michael; Daigle, Hugh; Cook, Ann E.; ...

2016-08-31

Two methane migration mechanisms have been proposed for coarse-grained gas hydrate reservoirs: short-range diffusive gas migration and long-range advective fluid transport from depth. Herein we demonstrate that short-range fluid flow due to overpressure in marine sediments is a significant additional methane transport mechanism that allows hydrate to precipitate in large quantities in thick, coarse-grained hydrate reservoirs. Two-dimensional simulations demonstrate that this migration mechanism, short-range advective transport, can supply significant amounts of dissolved gas and is unencumbered by limitations of the other two end-member mechanisms. Here, short-range advective migration can increase the amount of methane delivered to sands as compared tomore » the slow process of diffusion, yet it is not necessarily limited by effective porosity reduction as is typical of updip advection from a deep source.« less

Short-range, overpressure-driven methane migration in coarse-grained gas hydrate reservoirs

DOE Office of Scientific and Technical Information (OSTI.GOV)

Nole, Michael; Daigle, Hugh; Cook, Ann E.

Two methane migration mechanisms have been proposed for coarse-grained gas hydrate reservoirs: short-range diffusive gas migration and long-range advective fluid transport from depth. Herein we demonstrate that short-range fluid flow due to overpressure in marine sediments is a significant additional methane transport mechanism that allows hydrate to precipitate in large quantities in thick, coarse-grained hydrate reservoirs. Two-dimensional simulations demonstrate that this migration mechanism, short-range advective transport, can supply significant amounts of dissolved gas and is unencumbered by limitations of the other two end-member mechanisms. Here, short-range advective migration can increase the amount of methane delivered to sands as compared tomore » the slow process of diffusion, yet it is not necessarily limited by effective porosity reduction as is typical of updip advection from a deep source.« less

Influence of vegetation and gravel mesh on the tertiary treatment of wastewater from a cosmetics industry.

PubMed

Vlyssides, Apostolos G; Mai, Sofia T H; Barampouti, Elli Maria P; Loukakis, Haralampos N

2009-07-01

To estimate the influence of gravel mesh (fine and coarse) and vegetation (Phragmites and Arundo) on the efficiency of a reed bed, a pilot plant was included after the wastewater treatment plant of a cosmetic industry treatment system according to a 22 factorial experimental design. The maximum biochemical oxygen demand (BOD5), chemical oxygen demand (COD) and total phosphorous (TP) reduction was observed in the reactor, where Phragmites and fine gravel were used. In the reactor with Phragmites and coarse gravel, the maximum total Kjeldahl nitrogen (TKN) and total suspended solids (TSS) reduction was observed. The maximum total solids reduction was measured in the reed bed, which was filled with Arundo and coarse gravel. Conclusively, the treatment of a cosmetic industry's wastewater by reed beds as a tertiary treatment method is quite effective.

Aerosol Transport to the Greenland Summit Site, June, 2003 to August 2004

NASA Astrophysics Data System (ADS)

Cahill, T. A.; Cliff, S. S.; Jimenez-Cruz, M. P.; Portnoff, L.; Perry, K.; McConnell, J.; Burkhart, J.; Bales, R. C.

2004-12-01

With the resumption of year-round staffing of the Summit Greenland Environmental Observatory (GEOSummit) in 2003, we were able to sample aerosols year round by size (8 size modes), time (3 hr to 24 hr), and composition (mass, optical attenuation, and elements H, Na to Mo, plus lead) for association with particulate layers in snow, firn and ice. Sampling was accomplished using a 10 L/min slotted 8-stage rotating drum impactor (DELTA 8 DRUM, http://delta.ucdavis.edu)in the clean sector 0.5 km upwind from the main camp pollution sources. The air intake was approximately 2m above the snow surface. The rotation rate of the DRUM was slowed to 0.5 mm/day, allowing continuous sampling for 48 weeks with 12-hr time resolution on a single set of lightly greased 480 ?g/cm2 Mylar substrates. Early results show transport of relatively coarse (12 to 5 ?m aerodynamic diameter) soil aerosols to the site in spring, 2003, in well -defined plumes of 1- to 2-day duration. Trajectory analysis shows potential Asian sources. Sulfur-containing aerosols, also seen in plumes of short duration, occur in two size modes, a typical accumulation mode aerosol (0.75?0.34 ?m) and a very fine aerosol mode ( 0.34?0.09 ?m), the latter likely stratospheric in origin. We wish to acknowledge the excellent on-site support of the GEOSummit staff, including M. Lewis, R. Abbott, B. Torrison, and K. Hess, and T. Wood.

On the Effect of Sphere-Overlap on Super Coarse-Grained Models of Protein Assemblies

NASA Astrophysics Data System (ADS)

Degiacomi, Matteo T.

2018-05-01

Ion mobility mass spectrometry (IM/MS) can provide structural information on intact protein complexes. Such data, including connectivity and collision cross sections (CCS) of assemblies' subunits, can in turn be used as a guide to produce representative super coarse-grained models. These models are constituted by ensembles of overlapping spheres, each representing a protein subunit. A model is considered plausible if the CCS and sphere-overlap levels of its subunits fall within predetermined confidence intervals. While the first is determined by experimental error, the latter is based on a statistical analysis on a range of protein dimers. Here, we first propose a new expression to describe the overlap between two spheres. Then we analyze the effect of specific overlap cutoff choices on the precision and accuracy of super coarse-grained models. Finally, we propose a method to determine overlap cutoff levels on a per-case scenario, based on collected CCS data, and show that it can be applied to the characterization of the assembly topology of symmetrical homo-multimers. [Figure not available: see fulltext.

Effect of water content and flour particle size on gluten-free bread quality and digestibility.

PubMed

de la Hera, Esther; Rosell, Cristina M; Gomez, Manuel

2014-05-15

The impact of dough hydration level and particle size distribution of the rice flour on the gluten free bread quality and in vitro starch hydrolysis was studied. Rice flour was fractionated in fine and coarse parts and mixed with different amounts of water (70%, 90% and 110% hydration levels) and the rest of ingredients used for making gluten free bread. A larger bread specific volume was obtained when coarser fraction and great dough hydration (90-110%) were combined. The crumb texture improved when increasing dough hydration, although that effect was more pronounced when breads were obtained from a fine fraction. The estimated glycaemic index was higher in breads with higher hydration (90-110%). Slowly digestible starch (SDS) and resistant starch (RS) increased in the coarse flour breads. The coarse fraction complemented with a great dough hydration (90-110%) was the most suitable combination for developing rice bread when considering the bread volume and crumb texture. However, the lowest dough hydration limited starch gelatinization and hindered the in vitro starch digestibility. Copyright © 2013 Elsevier Ltd. All rights reserved.

Characterization of coarse particulate matter in school gyms.

PubMed

Braniš, Martin; Šafránek, Jiří

2011-05-01

We investigated the mass concentration, mineral composition and morphology of particles resuspended by children during scheduled physical education in urban, suburban and rural elementary school gyms in Prague (Czech Republic). Cascade impactors were deployed to sample the particulate matter. Two fractions of coarse particulate matter (PM(10-2.5) and PM(2.5-1.0)) were characterized by gravimetry, energy dispersive X-ray spectrometry and scanning electron microscopy. Two indicators of human activity, the number of exercising children and the number of physical education hours, were also recorded. Lower mass concentrations of coarse particulate matter were recorded outdoors (average PM(10-2.5) 4.1-7.4 μg m(-3) and PM(2.5-1.0) 2.0-3.3 μg m(-3)) than indoors (average PM(10-2.5) 13.6-26.7 μg m(-3) and PM(2.5-1.0) 3.7-7.4 μg m(-3)). The indoor concentrations of coarse aerosol were elevated during days with scheduled physical education with an average indoor-outdoor (I/O) ratio of 2.5-16.3 for the PM(10-2.5) and 1.4-4.8 for the PM(2.5-1.0) values. Under extreme conditions, the I/O ratios reached 180 (PM(10-2.5)) and 19.1 (PM(2.5-1.0)). The multiple regression analysis based on the number of students and outdoor coarse PM as independent variables showed that the main predictor of the indoor coarse PM concentrations is the number of students in the gym. The effect of outdoor coarse PM was weak and inconsistent. The regression models for the three schools explained 60-70% of the particular dataset variability. X-ray spectrometry revealed 6 main groups of minerals contributing to resuspended indoor dust. The most abundant particles were those of crustal origin composed of Si, Al, O and Ca. Scanning electron microscopy showed that, in addition to numerous inorganic particles, various types of fibers and particularly skin scales make up the main part of the resuspended dust in the gyms. In conclusion, school gyms were found to be indoor microenvironments with high concentrations of coarse particulate matter, which can contribute to increased short-term inhalation exposure of exercising children. Copyright © 2011 Elsevier Inc. All rights reserved.

Coarse-graining using the relative entropy and simplex-based optimization methods in VOTCA

NASA Astrophysics Data System (ADS)

Rühle, Victor; Jochum, Mara; Koschke, Konstantin; Aluru, N. R.; Kremer, Kurt; Mashayak, S. Y.; Junghans, Christoph

2014-03-01

Coarse-grained (CG) simulations are an important tool to investigate systems on larger time and length scales. Several methods for systematic coarse-graining were developed, varying in complexity and the property of interest. Thus, the question arises which method best suits a specific class of system and desired application. The Versatile Object-oriented Toolkit for Coarse-graining Applications (VOTCA) provides a uniform platform for coarse-graining methods and allows for their direct comparison. We present recent advances of VOTCA, namely the implementation of the relative entropy method and downhill simplex optimization for coarse-graining. The methods are illustrated by coarse-graining SPC/E bulk water and a water-methanol mixture. Both CG models reproduce the pair distributions accurately. SYM is supported by AFOSR under grant 11157642 and by NSF under grant 1264282. CJ was supported in part by the NSF PHY11-25915 at KITP. K. Koschke acknowledges funding by the Nestle Research Center.

Aerosol physical and chemical properties retrieved from ground-based remote sensing measurements during heavy haze days in Beijing winter

NASA Astrophysics Data System (ADS)

Li, Z.; Gu, X.; Wang, L.; Li, D.; Xie, Y.; Li, K.; Dubovik, O.; Schuster, G.; Goloub, P.; Zhang, Y.; Li, L.; Ma, Y.; Xu, H.

2013-10-01

With the increase in economic development over the past thirty years, many large cities in eastern and southwestern China are experiencing increased haze events and atmospheric pollution, causing significant impacts on the regional environment and even climate. However, knowledge on the aerosol physical and chemical properties in heavy haze conditions is still insufficient. In this study, two winter heavy haze events in Beijing that occurred in 2011 and 2012 were selected and investigated by using the ground-based remote sensing measurements. We used a CIMEL CE318 sun-sky radiometer to retrieve haze aerosol optical, physical and chemical properties, including aerosol optical depth (AOD), size distribution, complex refractive indices and aerosol fractions identified as black carbon (BC), brown carbon (BrC), mineral dust (DU), ammonium sulfate-like (AS) components and aerosol water content (AW). The retrieval results from a total of five haze days showed that the aerosol loading and properties during the two winter haze events were comparable. Therefore, average heavy haze property parameters were drawn to present a research case for future studies. The average AOD is about 3.0 at 440 nm, and the Ångström exponent is 1.3 from 440 to 870 nm. The fine-mode AOD is 2.8 corresponding to a fine-mode fraction of 0.93. The coarse particles occupied a considerable volume fraction of the bimodal size distribution in winter haze events, with the mean particle radius of 0.21 and 2.9 μm for the fine and coarse modes respectively. The real part of the refractive indices exhibited a relatively flat spectral behavior with an average value of 1.48 from 440 to 1020 nm. The imaginary part showed spectral variation, with the value at 440 nm (about 0.013) higher than the other three wavelengths (about 0.008 at 675 nm). The aerosol composition retrieval results showed that volume fractions of BC, BrC, DU, AS and AW are 1, 2, 49, 15 and 33%, respectively, on average for the investigated haze events. The preliminary uncertainty estimation and comparison of these remote sensing results with in situ BC and PM2.5 measurements are also presented in the paper.

A decade of infrared versus visible AOD analysis within the dust belt

NASA Astrophysics Data System (ADS)

Capelle, Virginie; Chédin, Alain; Pondrom, Marc; Crevoisier, Cyril; Armante, Raymond; Crépeau, Laurent; Scott, Noëlle

2017-04-01

Aerosols represent one of the dominant uncertainties in radiative forcing, partly because of their very high spatiotemporal variability, a still insufficient knowledge of their microphysical and optical properties, or of their vertical distribution. A better understanding and forecasting of their impact on climate therefore requires precise observations of dust emission and transport. Observations from space offer a good opportunity to follow, day by day and at high spatial resolution, dust evolution at global scale and over long time series. In this context, infrared observations, by allowing retrieving simultaneously dust optical depth (AOD) as well as the mean dust layer altitude, daytime and nighttime, over oceans and over continents, in particular over desert, appears highly complementary to observations in the visible. In this study, a decade of infrared observations (Metop-A/IASI and AIRS/AQUA) has been processed pixel by pixel, using a "Look-Up-Table" (LUT) physical approach. The retrieved infrared 10µm coarse-mode AOD is compared with the Spectral Deconvolution Algorithm (SDA) 500nm coarse mode AOD observed at 50 ground-based Aerosol RObotic NETwork (AERONET) sites located within the dust belt. Analyzing their brings into evidence an important geographical variability. Lowest values are found close to dust sources ( 0.45 for the Sahel or Arabian Peninsula, 0.6-0.7 for the Northern part of Africa or India), whereas the ratio increases for transported dust with values of 0.9-1 for the Caribbean and for the Mediterranean basin. This variability is interpreted as a marker of clays abundance, and might be linked to the dust particle illite to kaolinite ratio, a recognized tracer of dust sources and transport. More generally, it suggests that the difference between the radiative impact of dust aerosols in the visible and in the infrared depends on the type of particles observed. This highlights the importance of taking into account the specificity of the infrared when considering the role of mineral dust on the Earth's energy budget.

Source apportionment of aerosol particles at a European air pollution hot spot using particle number size distributions and chemical composition.

PubMed

Leoni, Cecilia; Pokorná, Petra; Hovorka, Jan; Masiol, Mauro; Topinka, Jan; Zhao, Yongjing; Křůmal, Kamil; Cliff, Steven; Mikuška, Pavel; Hopke, Philip K

2018-03-01

Ostrava in the Moravian-Silesian region (Czech Republic) is a European air pollution hot spot for airborne particulate matter (PM), polycyclic aromatic hydrocarbons (PAHs), and ultrafine particles (UFPs). Air pollution source apportionment is essential for implementation of successful abatement strategies. UFPs or nanoparticles of diameter <100 nm exhibit the highest deposition efficiency in human lungs. To permit apportionment of PM sources at the hot-spot including nanoparticles, Positive Matrix Factorization (PMF) was applied to highly time resolved particle number size distributions (NSD, 14 nm-10 μm) and PM 0.09-1.15 chemical composition. Diurnal patterns, meteorological variables, gaseous pollutants, organic markers, and associations between the NSD factors and chemical composition factors were used to identify the pollution sources. The PMF on the NSD reveals two factors in the ultrafine size range: industrial UFPs (28%, number mode diameter - NMD 45 nm), industrial/fresh road traffic nanoparticles (26%, NMD 26 nm); three factors in the accumulation size range: urban background (24%, NMD 93 nm), coal burning (14%, volume mode diameter - VMD 0.5 μm), regional pollution (3%, VMD 0.8 μm) and one factor in the coarse size range: industrial coarse particles/road dust (2%, VMD 5 μm). The PMF analysis of PM 0.09-1.15 revealed four factors: SIA/CC/BB (52%), road dust (18%), sinter/steel (16%), iron production (16%). The factors in the ultrafine size range resolved with NSD have a positive correlation with sinter/steel production and iron production factors resolved with chemical composition. Coal combustion factor resolved with NSD has moderate correlation with SIA/CC/BB factor. The organic markers homohopanes correlate with coal combustion and the levoglucosan correlates with urban background. The PMF applications to NSD and chemical composition datasets are complementary. PAHs in PM 1 were found to be associated with coal combustion factor. Copyright © 2017 Elsevier Ltd. All rights reserved.

Probing the structural dynamics of the CRISPR-Cas9 RNA-guided DNA-cleavage system by coarse-grained modeling.

PubMed

Zheng, Wenjun

2017-02-01

In the adaptive immune systems of many bacteria and archaea, the Cas9 endonuclease forms a complex with specific guide/scaffold RNA to identify and cleave complementary target sequences in foreign DNA. This DNA targeting machinery has been exploited in numerous applications of genome editing and transcription control. However, the molecular mechanism of the Cas9 system is still obscure. Recently, high-resolution structures have been solved for Cas9 in different structural forms (e.g., unbound forms, RNA-bound binary complexes, and RNA-DNA-bound tertiary complexes, corresponding to an inactive state, a pre-target-bound state, and a cleavage-competent or product state), which offered key structural insights to the Cas9 mechanism. To further probe the structural dynamics of Cas9 interacting with RNA and DNA at the amino-acid level of details, we have performed systematic coarse-grained modeling using an elastic network model and related analyses. Our normal mode analysis predicted a few key modes of collective motions that capture the observed conformational changes featuring large domain motions triggered by binding of RNA and DNA. Our flexibility analysis identified specific regions with high or low flexibility that coincide with key functional sites (such as DNA/RNA-binding sites, nuclease cleavage sites, and key hinges). We also identified a small set of hotspot residues that control the energetics of functional motions, which overlap with known functional sites and offer promising targets for future mutagenesis efforts to improve the specificity of Cas9. Finally, we modeled the conformational transitions of Cas9 from the unbound form to the binary complex and then the tertiary complex, and predicted a distinct sequence of domain motions. In sum, our findings have offered rich structural and dynamic details relevant to the Cas9 machinery, and will guide future investigation and engineering of the Cas9 systems. Proteins 2017; 85:342-353. © 2016 Wiley Periodicals, Inc. © 2016 Wiley Periodicals, Inc.

Experimental Simulations of Methane Gas Migration through Water-Saturated Sediment Cores

NASA Astrophysics Data System (ADS)

Choi, J.; Seol, Y.; Rosenbaum, E. J.

2010-12-01

Previous numerical simulations (Jaines and Juanes, 2009) showed that modes of gas migration would mainly be determined by grain size; capillary invasion preferably occurring in coarse-grained sediments vs. fracturing dominantly in fine-grained sediments. This study was intended to experimentally simulate preferential modes of gas migration in various water-saturated sediment cores. The cores compacted in the laboratory include a silica sand core (mean size of 180 μm), a silica silt core (1.7 μm), and a kaolin clay core (1.0 μm). Methane gas was injected into the core placed within an x-ray-transparent pressure vessel, which was under continuous x-ray computed tomography (CT) scanning with controlled radial (σr), axial (σa), and pore pressures (P). The CT image analysis reveals that, under the radial effective stress (σr') of 0.69 MPa and the axial effective stress (σa') of 1.31 MPa, fracturings by methane gas injection occur in both silt and clay cores. Fracturing initiates at the capillary pressure (Pc) of ~ 0.41 MPa and ~ 2.41 MPa for silt and clay cores, respectively. Fracturing appears as irregular fracture-networks consisting of nearly invisibly-fine multiple fractures, longitudinally-oriented round tube-shape conduits, or fine fractures branching off from the large conduits. However, for the sand core, only capillary invasion was observed at or above 0.034 MPa of capillary pressure under the confining pressure condition of σr' = 1.38 MPa and σa' = 2.62 MPa. Compared to the numerical predictions under similar confining pressure conditions, fracturing occurs with relatively larger grain sizes, which may result from lower grain-contact compression and friction caused by loose compaction and flexible lateral boundary employed in the experiment.

Multi-site characterization of tropical aerosols: Implications for regional radiative forcing

NASA Astrophysics Data System (ADS)

Sumit, Kumar; Devara, P. C. S.; Manoj, M. G.

2012-03-01

A land campaign, as a part of the Indian Space Research Organization-Geosphere Biosphere Program (ISRO-GBP), has been organized using a suit of instruments like AERONET (Aerosol Robotic Network) Sun/Sky sunphotometer, Microtops-II (MICROprocessor-controlled Total Ozone Portable Spectrometer), short-wave pyranometer from December 1, 2006 to April 30, 2007, over five locations (Ahmedabad, Pune, Sinhgad, Trivandrum and Gadanki) representing different environments. The dominance of different aerosol types such as biomass burning, urban/industrial pollution, marine origin and desert-dust particles is expected at these five sites. In all locations, significant day-to-day variability in AOD and Ångström exponent is observed. The Ångström exponent exhibits its lowest values over semi-arid region (Ahmedabad) 0.4-0.7, while it is around 1.8 at rural site (Gadanki). The retrieved volume size distributions for Pune, Ahmedabad and Trivandrum are found to be bimodal with varying concentration of each mode. Interesting feature of this observation is, very low coarse-mode volume concentration observed at Trivandrum even though observations were made about 300 m from the coast. The synergy of results from these complementary measurements is reflected in the computed regional aerosol radiative forcing and heating rates. We have used a radiative transfer model (SBDART) to examine the variations of aerosol direct radiative effect (ADRE) and heating rates to give an overall estimation of the effect on climate. The ADRE, over different measurement sites, at short wavelength is found to be negative at the surface in the range of - 18 to - 59 W m - 2 , and TOA forcing values varied from + 0.9 to - 8 W m - 2 .

Coarse woody debris: Managing benefits and fire hazard in the recovering forest

Treesearch

James K. Brown; Elizabeth D. Reinhardt; Kylie A. Kramer

2003-01-01

Management of coarse woody debris following fire requires consideration of its positive and negative values. The ecological benefits of coarse woody debris and fire hazard considerations are summarized. This paper presents recommendations for desired ranges of coarse woody debris. Example simulations illustrate changes in debris over time and with varying management....

Coarse-graining errors and numerical optimization using a relative entropy framework

NASA Astrophysics Data System (ADS)

Chaimovich, Aviel; Shell, M. Scott

2011-03-01

The ability to generate accurate coarse-grained models from reference fully atomic (or otherwise "first-principles") ones has become an important component in modeling the behavior of complex molecular systems with large length and time scales. We recently proposed a novel coarse-graining approach based upon variational minimization of a configuration-space functional called the relative entropy, Srel, that measures the information lost upon coarse-graining. Here, we develop a broad theoretical framework for this methodology and numerical strategies for its use in practical coarse-graining settings. In particular, we show that the relative entropy offers tight control over the errors due to coarse-graining in arbitrary microscopic properties, and suggests a systematic approach to reducing them. We also describe fundamental connections between this optimization methodology and other coarse-graining strategies like inverse Monte Carlo, force matching, energy matching, and variational mean-field theory. We suggest several new numerical approaches to its minimization that provide new coarse-graining strategies. Finally, we demonstrate the application of these theoretical considerations and algorithms to a simple, instructive system and characterize convergence and errors within the relative entropy framework.

Effect of degree of cutting of leek on physicochemical characteristics of Greek traditional sausages.

PubMed

Papastamatiou, F; Gerasopoulos, D; Siomos, A; Bloukas, J G

2007-04-01

Fresh-cut leek is one of the principal ingredients of Greek traditional sausages. In this study the effect of the degree of cutting of leek on the physicochemical traits of Greek traditional sausages was investigated. Leek was cut to three different degrees (coarse, medium and fine), before being mixed with meat, salt and seasonings; the mixture was placed in natural casings and stored for six days at 15-18°C. Sausages lost about 25% of their initial weight by the end of storage. While pH decreased in all treatments, it was significantly more so (to pH 4.1) in sausages with fine-cut leek, from as early as the second day of storage. During storage all sausages showed a decrease in lightness and a change in colour from yellow to red. The internal atmosphere of the sausages with fine-cut leek showed peak CO(2) concentrations of 30% while those with coarse and medium-cut leek showed peak CO(2) concentrations of 20% by day one of storage and equibrated to 5%. Ethylene in the internal atmosphere of sausages with fine and medium-cut leek peaked by day one at 5.5μll(-1) but to only 2μll(-1) for those with coarse-cut leek. Sausage nitrate content and antioxidant capacity did not show major differences between treatments. Fine-cut leek contributed to sausage stability and quality more rapidly than medium or coarse-cut leek.

Dust episodes in Beirut and their effect on the chemical composition of coarse and fine particulate matter.

PubMed

Jaafar, Malek; Baalbaki, Rima; Mrad, Raya; Daher, Nancy; Shihadeh, Alan; Sioutas, Constantinos; Saliba, Najat A

2014-10-15

Particles captured during dust episodes in Beirut originated from both the African and Arabian deserts. This particular air mixture showed an increase, over non-dust episodes, in particle volume distribution which was mostly noticed for particles ranging in sizes between 2.25 and 5 μm. It also resulted in an increase in average mass concentration by 48.5% and 14.6%, for the coarse and fine fractions, respectively. Chemical analysis of major aerosol components accounted for 93% of fine PM and 71% of coarse PM. Crustal material (CM) dominated the coarse PM fraction, contributing to 39 ± 15% of the total mass. Sea salt (SS) (11 ± 10%) and secondary ions (SI) (11 ± 7%) were the second most abundant elements. In the fine fraction, SI (36 ± 14%) were the most abundant PM constituent, followed by organic matter (OM) (33 ± 7%) and CM (13 ± 2%). Enrichment factors (EF) and correlation coefficients show that biogenic and anthropogenic sources contribute to the elemental composition of particles during dust episodes. This study emphasizes on the role played by the long-range transport of aerosols in changing the chemical composition of the organic and inorganic constituents of urban coarse and fine PM. The chemical reactions between aged urban and dust aerosols are enhanced during transport, leading to the formation of organo-nitrogenated and -sulfonated compounds. Their oligomeric morphologies are further confirmed by SEM-EDX measurements. Copyright © 2014 Elsevier B.V. All rights reserved.

Cyclic Behavior of Low Rise Concrete Shear Walls Containing Recycled Coarse and Fine Aggregates.

PubMed

Qiao, Qiyun; Cao, Wanlin; Qian, Zhiwei; Li, Xiangyu; Zhang, Wenwen; Liu, Wenchao

2017-12-07

In this study, the cyclic behaviors of low rise concrete shear walls using recycled coarse or fine aggregates were investigated. Eight low rise Recycled Aggregates Concrete (RAC) shear wall specimens were designed and tested under a cyclic loading. The following parameters were varied: replacement percentages of recycled coarse or fine aggregates, reinforcement ratio, axial force ratio and X-shaped rebars brace. The failure characteristics, hysteretic behavior, strength and deformation capacity, strain characteristics and stiffness were studied. Test results showed that the using of the Recycled Coarse Aggregates (RCA) and its replacement ratio had almost no influence on the mechanical behavior of the shear wall; however, the using of Recycled Fine Aggregates (RFA) had a certain influence on the ductility of the shear wall. When the reinforcement ratio increased, the strength and ductility also increased. By increasing the axial force ratio, the strength increased but the ductility decreased significantly. The encased brace had a significant effect on enhancing the RAC shear walls. The experimental maximum strengths were evaluated with existing design codes, it was indicated that the strength evaluation of the low rise RAC shear walls can follow the existing design codes of the conventional concrete shear walls.

Where Does Wood Most Effectively Enhance Storage? Network-Scale Distribution of Sediment and Organic Matter Stored by Instream Wood

NASA Astrophysics Data System (ADS)

Pfeiffer, Andrew; Wohl, Ellen

2018-01-01

We used 48 reach-scale measurements of large wood and wood-associated sediment and coarse particulate organic matter (CPOM) storage within an 80 km2 catchment to examine spatial patterns of storage relative to stream order. Wood, sediment, and CPOM are not distributed uniformly across the drainage basin. Third- and fourth-order streams (23% of total stream length) disproportionately store wood and coarse and fine sediments: 55% of total wood volume, 78% of coarse sediment, and 49% of fine sediment, respectively. Fourth-order streams store 0.8 m3 of coarse sediment and 0.2 m3 of fine sediment per cubic meter of wood. CPOM storage is highest in first-order streams (60% of storage in 47% of total network stream length). First-order streams can store up to 0.3 m3 of CPOM for each cubic meter of wood. Logjams in third- and fourth-order reaches are primary sediment storage agents, whereas roots in small streams may be more important for storage of CPOM. We propose the large wood particulate storage index to quantify average volume of sediment or CPOM stored by a cubic meter of wood.

Oil-water interfaces with surfactants: A systematic approach to determine coarse-grained model parameters

NASA Astrophysics Data System (ADS)

Vu, Tuan V.; Papavassiliou, Dimitrios V.

2018-05-01

In order to investigate the interfacial region between oil and water with the presence of surfactants using coarse-grained computations, both the interaction between different components of the system and the number of surfactant molecules present at the interface play an important role. However, in many prior studies, the amount of surfactants used was chosen rather arbitrarily. In this work, a systematic approach to develop coarse-grained models for anionic surfactants (such as sodium dodecyl sulfate) and nonionic surfactants (such as octaethylene glycol monododecyl ether) in oil-water interfaces is presented. The key is to place the theoretically calculated number of surfactant molecules on the interface at the critical micelle concentration. Based on this approach, the molecular description of surfactants and the effects of various interaction parameters on the interfacial tension are investigated. The results indicate that the interfacial tension is affected mostly by the head-water and tail-oil interaction. Even though the procedure presented herein is used with dissipative particle dynamics models, it can be applied for other coarse-grained methods to obtain the appropriate set of parameters (or force fields) to describe the surfactant behavior on the oil-water interface.

Coarse-sediment bands on the inner shelf of southern Monterey Bay, California

USGS Publications Warehouse

Hunter, R.E.; Dingler, J.R.; Anima, R.J.; Richmond, B.M.

1988-01-01

Bands of coarse sand that trend parallel to the shore, unlike the approximately shore-normal bands found in many inner shelf areas, occur in southern Monterey Bay at water depths of 10-20 m, less than 1 km from the shore. The bands are 20-100 m wide and alternate with bands of fine sand that are of similar width. The coarse-sand bands are as much as 1 m lower than the adjacent fine-sand bands, which have margins inclined at angles of about 20??. The mean grain sizes of the coarse and fine sand are in the range of 0.354-1.0 mm and 0.125-0.354 mm, respectively. Wave ripples that average about 1 m in spacing always occur in the coarse-sand bands. Over a period of 3 yrs, the individual bands moved irregularly and changed in shape, as demonstrated by repeated sidescan sonar surveys and by the monitoring of rods jetted into the sea floor. However, the overall pattern and distribution of the bands remained essentially unchanged. Cores, 0.5-1.0 m long, taken in coarse-sand bands contain 0.2-0.5 m of coarse sand overlying fine sand or interbedded fine and coarse sand. Cores from fine-sand bands have at least one thin coarse sand layer at about the depth of the adjacent coarse-sand band. None of the cores revealed a thick deposit of coarse sand. The shore-parallel bands are of unknown origin. Their origin is especially puzzling because approximately shore-normal bands are present in parts of the study area and immediately to the north. ?? 1988.

How severe plastic deformation at cryogenic temperature affects strength, fatigue, and impact behaviour of grade 2 titanium

NASA Astrophysics Data System (ADS)

Mendes, Anibal; Kliauga, Andrea M.; Ferrante, Maurizio; Sordi, Vitor L.

2014-08-01

Samples of grade 2 Ti were processed by Equal Channel Angular Pressing (ECAP), either isolated or followed by further deformation by rolling at room temperature and at 170 K. The main interest of the present work was the evaluation of the effect of cryogenic rolling on tensile strength, fatigue limit and Charpy impact absorbed energy. Results show a progressive improvement of strength and endurance limit in the following order: ECAP; ECAP followed by room temperature rolling and ECAP followed by cryogenic rolling. From the examination of the fatigued samples a ductile fracture mode was inferred in all cases; also, the sample processed by cryogenic rolling showed very small and shallow dimples and a small fracture zone, confirming the agency of strength on the fatigue behaviour. The Charpy impact energy followed a similar pattern, with the exception that ECAP produced only a small improvement over the coarse-grained material. Motives for the efficiency of cryogenic deformation by rolling are the reduced grain size and the association of strength and ductility. The production of favourable deformation textures must also be considered.

Exact Theory of Compressible Fluid Turbulence

NASA Astrophysics Data System (ADS)

Drivas, Theodore; Eyink, Gregory

2017-11-01

We obtain exact results for compressible turbulence with any equation of state, using coarse-graining/filtering. We find two mechanisms of turbulent kinetic energy dissipation: scale-local energy cascade and ``pressure-work defect'', or pressure-work at viscous scales exceeding that in the inertial-range. Planar shocks in an ideal gas dissipate all kinetic energy by pressure-work defect, but the effect is omitted by standard LES modeling of pressure-dilatation. We also obtain a novel inverse cascade of thermodynamic entropy, injected by microscopic entropy production, cascaded upscale, and removed by large-scale cooling. This nonlinear process is missed by the Kovasznay linear mode decomposition, treating entropy as a passive scalar. For small Mach number we recover the incompressible ``negentropy cascade'' predicted by Obukhov. We derive exact Kolmogorov 4/5th-type laws for energy and entropy cascades, constraining scaling exponents of velocity, density, and internal energy to sub-Kolmogorov values. Although precise exponents and detailed physics are Mach-dependent, our exact results hold at all Mach numbers. Flow realizations at infinite Reynolds are ``dissipative weak solutions'' of compressible Euler equations, similarly as Onsager proposed for incompressible turbulence.

Modulating laser intensity profile ellipticity for microstructural control during metal additive manufacturing

DOE Office of Scientific and Technical Information (OSTI.GOV)

Roehling, Tien T.; Wu, Sheldon S. Q.; Khairallah, Saad A.

Additively manufactured (AM) metals are often highly textured, containing large columnar grains that initiate epitaxially under steep temperature gradients and rapid solidification conditions. These unique microstructures partially account for the massive property disparity existing between AM and conventionally processed alloys. Although equiaxed grains are desirable for isotropic mechanical behavior, the columnar-to-equiaxed transition remains difficult to predict for conventional solidification processes, and much more so for AM. In this study, the effects of laser intensity profile ellipticity on melt track macrostructures and microstructures were studied in 316L stainless steel. Experimental results were supported by temperature gradients and melt velocities simulated usingmore » the ALE3D multi-physics code. As a general trend, columnar grains preferentially formed with increasing laser power and scan speed for all beam profiles. However, when conduction mode laser heating occurs, scan parameters that result in coarse columnar microstructures using Gaussian profiles produce equiaxed or mixed equiaxed-columnar microstructures using elliptical profiles. Furthermore, by modulating spatial laser intensity profiles on the fly, site-specific microstructures and properties can be directly engineered into additively manufactured parts.« less

A conditional stochastic weather generator for seasonal to multi-decadal simulations

NASA Astrophysics Data System (ADS)

Verdin, Andrew; Rajagopalan, Balaji; Kleiber, William; Podestá, Guillermo; Bert, Federico

2018-01-01

We present the application of a parametric stochastic weather generator within a nonstationary context, enabling simulations of weather sequences conditioned on interannual and multi-decadal trends. The generalized linear model framework of the weather generator allows any number of covariates to be included, such as large-scale climate indices, local climate information, seasonal precipitation and temperature, among others. Here we focus on the Salado A basin of the Argentine Pampas as a case study, but the methodology is portable to any region. We include domain-averaged (e.g., areal) seasonal total precipitation and mean maximum and minimum temperatures as covariates for conditional simulation. Areal covariates are motivated by a principal component analysis that indicates the seasonal spatial average is the dominant mode of variability across the domain. We find this modification to be effective in capturing the nonstationarity prevalent in interseasonal precipitation and temperature data. We further illustrate the ability of this weather generator to act as a spatiotemporal downscaler of seasonal forecasts and multidecadal projections, both of which are generally of coarse resolution.

Modulating laser intensity profile ellipticity for microstructural control during metal additive manufacturing

DOE PAGES

Roehling, Tien T.; Wu, Sheldon S. Q.; Khairallah, Saad A.; ...

2017-02-12

Additively manufactured (AM) metals are often highly textured, containing large columnar grains that initiate epitaxially under steep temperature gradients and rapid solidification conditions. These unique microstructures partially account for the massive property disparity existing between AM and conventionally processed alloys. Although equiaxed grains are desirable for isotropic mechanical behavior, the columnar-to-equiaxed transition remains difficult to predict for conventional solidification processes, and much more so for AM. In this study, the effects of laser intensity profile ellipticity on melt track macrostructures and microstructures were studied in 316L stainless steel. Experimental results were supported by temperature gradients and melt velocities simulated usingmore » the ALE3D multi-physics code. As a general trend, columnar grains preferentially formed with increasing laser power and scan speed for all beam profiles. However, when conduction mode laser heating occurs, scan parameters that result in coarse columnar microstructures using Gaussian profiles produce equiaxed or mixed equiaxed-columnar microstructures using elliptical profiles. Furthermore, by modulating spatial laser intensity profiles on the fly, site-specific microstructures and properties can be directly engineered into additively manufactured parts.« less