46 CFR 58.30-10 - Hydraulic fluid.

Code of Federal Regulations, 2014 CFR

2014-10-01

... 46 Shipping 2 2014-10-01 2014-10-01 false Hydraulic fluid. 58.30-10 Section 58.30-10 Shipping COAST GUARD, DEPARTMENT OF HOMELAND SECURITY (CONTINUED) MARINE ENGINEERING MAIN AND AUXILIARY MACHINERY....03-1), Cleveland “Open Cup” test method. (c) The chemical and physical properties of the hydraulic...

46 CFR 58.30-10 - Hydraulic fluid.

Code of Federal Regulations, 2010 CFR

2010-10-01

... 46 Shipping 2 2010-10-01 2010-10-01 false Hydraulic fluid. 58.30-10 Section 58.30-10 Shipping COAST GUARD, DEPARTMENT OF HOMELAND SECURITY (CONTINUED) MARINE ENGINEERING MAIN AND AUXILIARY MACHINERY....03-1), Cleveland “Open Cup” test method. (c) The chemical and physical properties of the hydraulic...

46 CFR 58.30-10 - Hydraulic fluid.

Code of Federal Regulations, 2013 CFR

2013-10-01

... 46 Shipping 2 2013-10-01 2013-10-01 false Hydraulic fluid. 58.30-10 Section 58.30-10 Shipping COAST GUARD, DEPARTMENT OF HOMELAND SECURITY (CONTINUED) MARINE ENGINEERING MAIN AND AUXILIARY MACHINERY....03-1), Cleveland “Open Cup” test method. (c) The chemical and physical properties of the hydraulic...

46 CFR 58.30-10 - Hydraulic fluid.

Code of Federal Regulations, 2012 CFR

2012-10-01

... 46 Shipping 2 2012-10-01 2012-10-01 false Hydraulic fluid. 58.30-10 Section 58.30-10 Shipping COAST GUARD, DEPARTMENT OF HOMELAND SECURITY (CONTINUED) MARINE ENGINEERING MAIN AND AUXILIARY MACHINERY....03-1), Cleveland “Open Cup” test method. (c) The chemical and physical properties of the hydraulic...

46 CFR 58.30-10 - Hydraulic fluid.

Code of Federal Regulations, 2011 CFR

2011-10-01

... 46 Shipping 2 2011-10-01 2011-10-01 false Hydraulic fluid. 58.30-10 Section 58.30-10 Shipping COAST GUARD, DEPARTMENT OF HOMELAND SECURITY (CONTINUED) MARINE ENGINEERING MAIN AND AUXILIARY MACHINERY....03-1), Cleveland “Open Cup” test method. (c) The chemical and physical properties of the hydraulic...

46 CFR 52.01-35 - Auxiliary, donkey, fired thermal fluid heater, and heating boilers.

Code of Federal Regulations, 2011 CFR

2011-10-01

... 46 Shipping 2 2011-10-01 2011-10-01 false Auxiliary, donkey, fired thermal fluid heater, and heating boilers. 52.01-35 Section 52.01-35 Shipping COAST GUARD, DEPARTMENT OF HOMELAND SECURITY (CONTINUED) MARINE ENGINEERING POWER BOILERS General Requirements § 52.01-35 Auxiliary, donkey, fired thermal...

46 CFR 52.01-35 - Auxiliary, donkey, fired thermal fluid heater, and heating boilers.

Code of Federal Regulations, 2014 CFR

2014-10-01

... 46 Shipping 2 2014-10-01 2014-10-01 false Auxiliary, donkey, fired thermal fluid heater, and heating boilers. 52.01-35 Section 52.01-35 Shipping COAST GUARD, DEPARTMENT OF HOMELAND SECURITY (CONTINUED) MARINE ENGINEERING POWER BOILERS General Requirements § 52.01-35 Auxiliary, donkey, fired thermal...

46 CFR 52.01-35 - Auxiliary, donkey, fired thermal fluid heater, and heating boilers.

Code of Federal Regulations, 2012 CFR

2012-10-01

... 46 Shipping 2 2012-10-01 2012-10-01 false Auxiliary, donkey, fired thermal fluid heater, and heating boilers. 52.01-35 Section 52.01-35 Shipping COAST GUARD, DEPARTMENT OF HOMELAND SECURITY (CONTINUED) MARINE ENGINEERING POWER BOILERS General Requirements § 52.01-35 Auxiliary, donkey, fired thermal...

46 CFR 52.01-35 - Auxiliary, donkey, fired thermal fluid heater, and heating boilers.

Code of Federal Regulations, 2013 CFR

2013-10-01

... 46 Shipping 2 2013-10-01 2013-10-01 false Auxiliary, donkey, fired thermal fluid heater, and heating boilers. 52.01-35 Section 52.01-35 Shipping COAST GUARD, DEPARTMENT OF HOMELAND SECURITY (CONTINUED) MARINE ENGINEERING POWER BOILERS General Requirements § 52.01-35 Auxiliary, donkey, fired thermal...

46 CFR 52.01-35 - Auxiliary, donkey, fired thermal fluid heater, and heating boilers.

Code of Federal Regulations, 2010 CFR

2010-10-01

... heating boilers. 52.01-35 Section 52.01-35 Shipping COAST GUARD, DEPARTMENT OF HOMELAND SECURITY (CONTINUED) MARINE ENGINEERING POWER BOILERS General Requirements § 52.01-35 Auxiliary, donkey, fired thermal fluid heater, and heating boilers. (a) To determine the appropriate part of the regulations where...

Evidence of regional subsidence and associated interior wetland loss induced by hydrocarbon production, Gulf Coast region, USA

USGS Publications Warehouse

Morton, R.A.; Bernier, J.C.; Barras, J.A.

2006-01-01

Analysis of remote images, elevation surveys, stratigraphic cross-sections, and hydrocarbon production data demonstrates that extensive areas of wetland loss in the northern Gulf Coast region of the United States were associated with large-volume fluid production from mature petroleum fields. Interior wetland losses at many sites in coastal Louisiana and Texas are attributed largely to accelerated land subsidence and fault reactivation induced by decreased reservoir pressures as a result of rapid or prolonged extraction of gas, oil, and associated brines. Evidence that moderately-deep hydrocarbon production has induced land-surface subsidence and reactivated faults that intersect the surface include: (1) close temporal and spatial correlation of fluid production with surficial changes including rapid subsidence of wetland sediments near producing fields, (2) measurable offsets of shallow strata across the zones of wetland loss, (3) large reductions in subsurface pressures where subsidence rates are high, (4) coincidence of orientation and direction of displacement between surface fault traces and faults that bound the reservoirs, and (5) accelerated subsidence rates near producing fields compared to subsidence rates in surrounding areas or compared to geological rates of subsidence. Based on historical trends, subsidence rates in the Gulf Coast region near producing fields most likely will decrease in the future because most petroleum fields are nearly depleted. Alternatively, continued extraction of conventional energy resources as well as potential production of alternative energy resources (geopressured-geothermal fluids) in the Gulf Coast region could increase subsidence and land losses and also contribute to inundation of areas of higher elevation. ?? Springer-Verlag 2006.

Structure and functional characteristics of the meiofauna community in highly unstable intertidal mudbanks in Suriname and French Guiana (North Atlantic coast of South America)

NASA Astrophysics Data System (ADS)

Christine, Dupuy; Hien, Nguyen Thanh; David, Mizrahi; Jérôme, Jourde; Martine, Bréret; Hélène, Agogué; Laureen, Beaugeard; Pierrick, Bocher

2015-11-01

The North Atlantic coast of South America is influenced by the Amazon River. This coast is considered the muddiest in the world due to the enormous suspended sediment input from the Amazon River. The mobility of the sediment imposes a geomorphological dynamic with a rapid change of shoreline and fast alternation of facies types of the sediment. This study first describes the spatial and functional structure of meiofauna communities of highly unstable intertidal flats along coasts of French Guiana and Suriname in relation to environmental variables. Six sampling sites, composed mainly of muddy sediment, were located 700 km (Kourou) to 1200 km (Nickerie) from the mouth of the Amazon River. The granulometry, chlorophyll a biomass, prokaryote abundance, percentage of organic matter, meiofauna abundance and feeding guilds of nematodes in sediment stations were independent of the distance of the Amazon River mouth and likely were more influenced by the local dynamism of migration of mudbanks. Meiofauna was not more abundant when the sediment was dominated by the finest sediment particles and also when chlorophyll a and prokaryotes, potential prey of meiofauna, were greater. However, as a percentage, small nematodes (biomass of 0.07±0.001 μg ind-1), which are mainly epigrowth-feeders, were more abundant in very fluid mud. Local granulometry and organic matter content appeared to be driving factors of the size structure and functional characteristics of nematodes. Despite the high instability of mudflats, chlorophyll a biomass and meiofauna abundance always tended to be higher toward other world areas. No foraminifera among the six stations of the study were found. Very fluid mud with physical instability of sediment caused a large perturbation to the settlement of meiofauna; the least amounts of chlorophyll a biomass and prokaryotic and meiofauna abundances were found there. Thus, the probable mobility of sediment may select for smaller meiobenthic organisms, mainly epigrowth-feeders nematodes, and disturb the larger organisms in the sediment, and, therefore, they would not permit the settlement of the foraminifera. In addition, no non-permanent meiofauna largely was found in the sediment.

Dynamical Systems Analysis Of Transport In Flows Defined As Data Sets: Contaminant Control On The Coast Of Florida And Criteria For Warm Rings In The North Atlantic

NASA Astrophysics Data System (ADS)

Lekien, F.; Coulliette, C.

In this talk we will briefly describe the dynamical systems framework for Lagrangian transport. In particular, we will show how dynamical systems theory can now be uti- lized in the context of "real" problems, such as those derived from remote sensing observations or the input of a large scale numerical model. We will illustrate these ideas by two examples. Study of fluid transport near the Atlantic coast of Florida us- ing a velocity field observed experimentally from high frequency radar measurements reveals that dynamical systems theory can be used to reduce contaminant density in coastal areas. We also study intergyre transport in a quasigeostrophic model of the North Atlantic. We investigate the structure of eddies detaching from the Gulf Stream and prove that in a double gyre structure cyclonic rings cannot contain fluid from the other gyre. Only anticyclonic rings can contain "foreign" fluid coming from another gyre. This explains many phenomenons, such as why counter-clockwise rings South of the Gulf Stream contain colder fluid advected directly from the northern gyre, which has been illustrated in many observational studies.

77 FR 5493 - Southwest Fisheries Science Center; Public Meeting

Federal Register 2010, 2011, 2012, 2013, 2014

2012-02-03

... review of the Collaborative Optically-assisted Acoustic Survey Technique (COAST) by the Center for...: (858) 546-7170. SUPPLEMENTARY INFORMATION: The COAST uses high-precision acoustic sampling to... distributions. Thus, the COAST combines information from acoustic and optical sampling to obtain relatively...

Pockmarks off Big Sur, California

USGS Publications Warehouse

Paull, C.; Ussler, W.; Maher, N.; Greene, H. Gary; Rehder, G.; Lorenson, T.; Lee, H.

2002-01-01

A pockmark field was discovered during EM-300 multi-beam bathymetric surveys on the lower continental slope off the Big Sur coast of California. The field contains ??? 1500 pockmarks which are between 130 and 260 m in diameter, and typically are 8-12 m deep located within a 560 km2 area. To investigate the origin of these features, piston cores were collected from both the interior and the flanks of the pockmarks, and remotely operated vehicle observation (ROV) video and sampling transects were conducted which passed through 19 of the pockmarks. The water column within and above the pockmarks was sampled for methane concentration. Piston cores and ROV collected push cores show that the pockmark field is composed of monotonous fine silts and clays and the cores within the pockmarks are indistinguishable from those outside the pockmarks. No evidence for either sediment winnowing or diagenetic alteration suggestive of fluid venting was obtained. 14C measurements of the organic carbon in the sediments indicate continuous sedimentation throughout the time resolution of the radiocarbon technique ( ??? 45000 yr BP), with a sedimentation rate of ??? 10 cm per 1000 yr both within and between the pockmarks. Concentrations of methane, dissolved inorganic carbon, sulfate, chloride, and ammonium in pore water extracted from within the cores are generally similar in composition to seawater and show little change with depth, suggesting low biogeochemical activity. These pore water chemical gradients indicate that neither significant accumulations of gas are likely to exist in the shallow subsurface ( ??? 100 m) nor is active fluid advection occurring within the sampled sediments. Taken together the data indicate that these pockmarks are more than 45000 yr old, are presently inactive, and contain no indications of earlier fluid or gas venting events. ?? 2002 Elsevier Science B.V. All rights reserved.

Geochemical characteristics and K-Ar ages of rare-metal bearing pegmatites from the Birimian of southeastern Ghana

USGS Publications Warehouse

Chalokwu, C.I.; Ghazi, M.A.; Foord, E.E.

1997-01-01

The pegmatite-aplite rocks at Mankwadzi (Ejisimanku Hills) in southeastern Ghana are part of the pegmatite district that extends from Cape Coast to Winneba along the Atlantic coastline. The pegmatites are associated with the Cape Coast granite complex and were intruded during the waning phase of the Eburnian Orogeny (???2.0 Ga). Three muscovite separates from pegmatite give K-Ar retention ages of 1909 ?? 13 Ma, 1965 ?? 13 Ma and 2019 ?? 14 Ma. A biotite separate from granite yields a K-Ar age of 1907 ?? 13 Ma. These ages are similar to K-Ar dates previously reported for the Cape Coast granites, indicating that the granites and pegmatites are coeval and probably genetically linked. The pegmatites are enriched in Li, Be, Nb and Sn and considerably impoverished in Rb, Th, Y and REEs. Microscopic examination of quartz from the pegmatites shows a large number of low salinity fluid inclusions that can be divided into two types: (1) one-phase liquid or gas-filled inclusions; and (2) two-phase liquid-vapour inclusions, with the vapour occupying 2-5% of the volume. The homogenisation temperature of the fluid inclusions clusters between 129 and 144??C. These homogenisation temperatures lead to an inferred entrapment temperature of ???300??C at a pressure of ???2.5 kbar, which is estimated for the metamorphism of host hornblende schists. The pegmatite fluid inclusions are interpreted as being secondary to the quartz hosts. ?? 1997 Elsevier Science Limited.

Economic impacts of anthropogenic activities on coastlines of the United States

USGS Publications Warehouse

Magoon, Orville T.; Williams, S. Jeffress; Lent, Linda K.; Richmond, James A.; Treadwell, Donald D.; Douglass, Scott L.; Edge, Billy L.; Ewing, Lesley C.; Pratt, Anthony P.

2004-01-01

Anthropogenic activities primarily impact coasts by reducing sediment inputs, altering sediment transport processes, and accelerating sediment losses to the offshore. These activities include: sand and gravel extraction, navigation and shore protection works; non-structural shoreline management strategies such as beach nourishment, sand by-passing and beach scraping, dams and flood control works; channel and inlet dredging; subsidence caused by fluid extraction and reduction of carbonate beach material. Although many of these activities have improved the quality of life, they also have had unintended effects on the coast. The issues that arise from human alterations of the coast are common to many coastal regions around the world; this paper draws from several areas of the United States to present an overview and provisional assessment of the economic consequences of anthropogenic activities along the Pacific coast.

Toxoplasma gondii in stranded marine mammals from the North Sea and Eastern Atlantic Ocean: Findings and diagnostic difficulties.

PubMed

van de Velde, Norbert; Devleesschauwer, Brecht; Leopold, Mardik; Begeman, Lineke; IJsseldijk, Lonneke; Hiemstra, Sjoukje; IJzer, Jooske; Brownlow, Andrew; Davison, Nicholas; Haelters, Jan; Jauniaux, Thierry; Siebert, Ursula; Dorny, Pierre; De Craeye, Stéphane

2016-10-30

The occurrence of the zoonotic protozoan parasite Toxoplasma gondii in marine mammals remains a poorly understood phenomenon. In this study, samples from 589 marine mammal species and 34 European otters (Lutra lutra), stranded on the coasts of Scotland, Belgium, France, The Netherlands and Germany, were tested for the presence of T. gondii. Brain samples were analysed by polymerase chain reaction (PCR) for detection of parasite DNA. Blood and muscle fluid samples were tested for specific antibodies using a modified agglutination test (MAT), a commercial multi-species enzyme-linked immunosorbent assay (ELISA) and an immunofluorescence assay (IFA). Out of 193 animals tested by PCR, only two harbour porpoise (Phocoena phocoena) cerebrum samples, obtained from animals stranded on the Dutch coast, tested positive. The serological results showed a wide variation depending on the test used. Using a cut-off value of 1/40 dilution in MAT, 141 out of 292 animals (41%) were positive. Using IFA, 30 out of 244 tested samples (12%) were positive at a 1/50 dilution. The commercial ELISA yielded 7% positives with a cut-off of the sample-to-positive (S/P) ratio≥50; and 12% when the cut-off was set at S/P ratio≥20. The high number of positives in MAT may be an overestimation due to the high degree of haemolysis of the samples and/or the presence of lipids. The ELISA results could be an underestimation due to the use of a multispecies conjugate. Our results confirm the presence of T. gondii in marine mammals in The Netherlands and show exposure to the parasite in both the North Sea and the Eastern Atlantic Ocean. We also highlight the limitations of the tests used to diagnose T. gondii in stranded marine mammals. Copyright © 2016 Elsevier B.V. All rights reserved.

First report of Perkinsus beihaiensis in Crassostrea madrasensis from the Indian subcontinent.

PubMed

Sanil, N K; Suja, G; Lijo, J; Vijayan, K K

2012-04-26

Protozoan parasites of the genus Perkinsus are considered important pathogens responsible for mass mortalities in many wild and farmed bivalve populations. The present study was initiated to screen populations of the Indian edible oyster Crassostrea madrasensis, a promising candidate for aquaculture along the Indian coasts, for the presence of Perkinsus spp. The study reports the presence of P. beihaiensis for the first time in C. madrasensis populations from the Indian subcontinent and south Asia. Samples collected from the east and west coasts of India were subjected to Ray's fluid thioglycollate medium (RFTM) culture and histology which indicated the presence of Perkinsus spp. PCR screening of the tissues using specific primers amplified the product specific to the genus Perkinsus. The taxonomic affinities of the parasites were determined by sequencing both internal transcribed spacer (ITS) and actin genes followed by basic local alignment search tool (BLAST) analysis. Analysis based on the ITS sequences showed 98 to 100% identity to Perkinsus spp. (P. beihaiensis and Brazilian Perkinsus sp.). The pairwise genetic distance values and phylogenetic analysis confirmed that 2 of the present samples belonged to the P. beihaiensis clade while the other 4 showed close affinities with the Brazilian Perkinsus sp. clade. The genetic divergence data, close affinity with the Brazilian Perkinsus sp., and co-existence with P. beihaiensis in the same host species in the same habitat show that the remaining 4 samples exhibit some degree of variation from P. beihaiensis. As expected, the sequencing of actin genes did not show any divergence among the samples studied. They probably could be intraspecific variants of P. beihaiensis having a separate lineage in the process of evolution.

Observed salinity changes in the Alappuzha mud bank, southwest coast of India and its implication to hypothesis of mudbank formation

NASA Astrophysics Data System (ADS)

Muraleedharan, K. R.; Dinesh Kumar, P. K.; Prasanna Kumar, S.; Srijith, B.; John, Sebin; Naveen Kumar, K. R.

2017-04-01

Alappuzha mud bank draws special attention among the twenty-mud bank locations reported along the Kerala coast by its remoteness from riverine sources. Among several hypotheses proposed for the formation of mud bank, the subterranean hypothesis was most accepted because of the occurrence of low salinity in the bottom layers. The present study provides evidence to show that occurrence of low salinity waters near the bottom in the mud bank region is an artifact of measuring technique employed for the measurement of salinity. The usual technique of conductivity based salinity determination completely fails in the presence of water laden with high amount of suspended sediment. Laboratory experiments were conducted to determine the response of electrode and conductivity cell sensor types to determine the salinity using a range of suspended sediment in the water column. Actual sediment samples from the mud bank region were utilized for the above studies. Based on field observations and experiments, we conclude that the low salinity was the manifestation of the presence highly turbid fluid mud formation in the mud bank region rather than the influence of fresh water.

Systems and methods for separating particles and/or substances from a sample fluid

DOEpatents

Mariella, Jr., Raymond P.; Dougherty, George M.; Dzenitis, John M.; Miles, Robin R.; Clague, David S.

2016-11-01

Systems and methods for separating particles and/or toxins from a sample fluid. A method according to one embodiment comprises simultaneously passing a sample fluid and a buffer fluid through a chamber such that a fluidic interface is formed between the sample fluid and the buffer fluid as the fluids pass through the chamber, the sample fluid having particles of interest therein; applying a force to the fluids for urging the particles of interest to pass through the interface into the buffer fluid; and substantially separating the buffer fluid from the sample fluid.

Radon in unconventional natural gas from gulf coast geopressured-geothermal reservoirs

USGS Publications Warehouse

Kraemer, T.F.

1986-01-01

Radon-222 has been measured in natural gas produced from experimental geopressured-geothermal test wells. Comparison with published data suggests that while radon activity of this unconventional natural gas resource is higher than conventional gas produced in the gulf coast, it is within the range found for conventional gas produced throughout the U.S. A method of predicting the likely radon activity of this unconventional gas is described on the basis of the data presented, methane solubility, and known or assumed reservoir conditions of temperature, fluid pressure, and formation water salinity.

Ball assisted device for analytical surface sampling

DOEpatents

ElNaggar, Mariam S; Van Berkel, Gary J; Covey, Thomas R

2015-11-03

A system for sampling a surface includes a sampling probe having a housing and a socket, and a rolling sampling sphere within the socket. The housing has a sampling fluid supply conduit and a sampling fluid exhaust conduit. The sampling fluid supply conduit supplies sampling fluid to the sampling sphere. The sampling fluid exhaust conduit has an inlet opening for receiving sampling fluid carried from the surface by the sampling sphere. A surface sampling probe and a method for sampling a surface are also disclosed.

The geochemistry of fluids from an active shallow submarine hydrothermal system: Milos island, Hellenic Volcanic Arc

NASA Astrophysics Data System (ADS)

Valsami-Jones, E.; Baltatzis, E.; Bailey, E. H.; Boyce, A. J.; Alexander, J. L.; Magganas, A.; Anderson, L.; Waldron, S.; Ragnarsdottir, K. V.

2005-10-01

Geothermal activity in the Aegean island of Milos (Greece), associated with island-arc volcanism, is abundant both on-and off-shore. Hydrothermal fluids venting from several sites, mainly shallow submarine (up to 10 m), but also just above seawater level in one locality, were sampled over four summer field seasons. Some of the discharging fluids are associated with the formation of hydrothermal edifices. Overall, the main characteristics of the hydrothermal fluids are low pH and variable chlorinity. The lowest recorded pH was 1.7, and chlorinity ranged from 0.1 to 2.5 times that of seawater. The highest fluid temperatures recorded on site were 115 °C. Two main types of fluids were identified: low-chlorinity fluids containing low concentrations of alkalis (potassium, lithium, sodium) and calcium, and high concentrations of silica and sulphate; and high-chlorinity fluids containing high concentrations of alkalis and calcium, and lower concentrations of silica and sulphate. The type locality of the high-chlorinity fluids is shallow submarine in Palaeochori, near the east end of the south coast of the island, whereas the type locality of the low-chlorinity fluids is a cave to the west of Palaeochori. The two fluid types are therefore often referred to as "submarine" and "cave" fluids respectively. Both fluid types had low magnesium and high metal concentrations but were otherwise consistently different from each other. The low-chlorinity fluids had the highest cobalt, nickel, aluminium, iron and chromium (up to 1.6 μM, 3.6 μM, 1586 μM, 936 μM and 3.0 μM, respectively) and the high-chlorinity fluids had the highest zinc, cadmium, manganese and lead (up to 4.1 μM, 1.0 μM, 230 μM and 32 μM, respectively). Geochemical modelling suggests that metals in the former are likely to have been transported as sulphate species or free ions and in the latter as chloride species or free ions. Isotopic values for both water types range between δD -12 to 33‰ and δ 18O 1.2 to 4.6‰. The range of fluid compositions and isotopic contents indicates a complex history of evolution for the system. Both types of fluids appear to be derived from seawater and thus are likely to represent end members of a single fluid phase that underwent phase separation at depth.

Determination of organochlorine pesticide concentrations in flathead mullet (Mugil cephalus) caught from the western Black Sea coast of Turkey.

PubMed

Bozcaarmutlu, Azra; Turna, Sema; Sapmaz, Canan; Yenisoy-Karakaş, Serpil

2014-12-01

The objective of this study was to determine the levels of 14 organochlorine pesticides (OCPs) in flathead mullet (Mugil cephalus) caught from the western Black Sea coast of Turkey. The fish samples were caught from five different locations of the western Black Sea coast of Turkey in August 2009. Organochlorine pesticides were extracted from the liver tissues, and then the levels of OCPs were measured using gas chromatography with an electron capture detector. Organochlorine pesticides were detected in all locations. The levels of total OCPs in fish samples ranged between 0.224 and 1.103 μg g(-1) dry weight in the western Black Sea coast of Turkey. DDT, beta-HCH, and endosulfan I were the dominant OCPs in the fish samples. The levels of DDT in fish samples ranged between 0.081 and 0.186 μg g(-1) dry weight. The levels of total HCH in fish samples ranged between 0.007 and 0.376 μg g(-1) dry weight in the western Black Sea coast of Turkey. Although the usage of OCPs was banned in Turkey, the results of this study clearly indicated the presence of OCPs in the western Black Sea coast of Turkey and exposure of living organisms to these chemicals.

Composition, Alteration, and Texture of Fault-Related Rocks from Safod Core and Surface Outcrop Analogs: Evidence for Deformation Processes and Fluid-Rock Interactions

NASA Astrophysics Data System (ADS)

Bradbury, Kelly K.; Davis, Colter R.; Shervais, John W.; Janecke, Susanne U.; Evans, James P.

2015-05-01

We examine the fine-scale variations in mineralogical composition, geochemical alteration, and texture of the fault-related rocks from the Phase 3 whole-rock core sampled between 3,187.4 and 3,301.4 m measured depth within the San Andreas Fault Observatory at Depth (SAFOD) borehole near Parkfield, California. This work provides insight into the physical and chemical properties, structural architecture, and fluid-rock interactions associated with the actively deforming traces of the San Andreas Fault zone at depth. Exhumed outcrops within the SAF system comprised of serpentinite-bearing protolith are examined for comparison at San Simeon, Goat Rock State Park, and Nelson Creek, California. In the Phase 3 SAFOD drillcore samples, the fault-related rocks consist of multiple juxtaposed lenses of sheared, foliated siltstone and shale with block-in-matrix fabric, black cataclasite to ultracataclasite, and sheared serpentinite-bearing, finely foliated fault gouge. Meters-wide zones of sheared rock and fault gouge correlate to the sites of active borehole casing deformation and are characterized by scaly clay fabric with multiple discrete slip surfaces or anastomosing shear zones that surround conglobulated or rounded clasts of compacted clay and/or serpentinite. The fine gouge matrix is composed of Mg-rich clays and serpentine minerals (saponite ± palygorskite, and lizardite ± chrysotile). Whole-rock geochemistry data show increases in Fe-, Mg-, Ni-, and Cr-oxides and hydroxides, Fe-sulfides, and C-rich material, with a total organic content of >1 % locally in the fault-related rocks. The faults sampled in the field are composed of meters-thick zones of cohesive to non-cohesive, serpentinite-bearing foliated clay gouge and black fine-grained fault rock derived from sheared Franciscan Formation or serpentinized Coast Range Ophiolite. X-ray diffraction of outcrop samples shows that the foliated clay gouge is composed primarily of saponite and serpentinite, with localized increases in Ni- and Cr-oxides and C-rich material over several meters. Mesoscopic and microscopic textures and deformation mechanisms interpreted from the outcrop sites are remarkably similar to those observed in the SAFOD core. Micro-scale to meso-scale fabrics observed in the SAFOD core exhibit textural characteristics that are common in deformed serpentinites and are often attributed to aseismic deformation with episodic seismic slip. The mineralogy and whole-rock geochemistry results indicate that the fault zone experienced transient fluid-rock interactions with fluids of varying chemical composition, including evidence for highly reducing, hydrocarbon-bearing fluids.

Metabolic and Physiological Characteristics of Novel Cultivars from Serpentinite Seep Fluids

NASA Astrophysics Data System (ADS)

Nelson, B.; Chowdhury, S.; Brazelton, W. J.; Schrenk, M. O.

2011-12-01

Subsurface waters associated with the alteration of ultramafic rocks become highly reducing and alkaline through a process known as serpentinization. As habitat, these fluids are in many ways metabolically constraining but can provide sufficient energy for chemolithotrophy. As part of an ongoing effort to characterize these communities, heterotrophic enrichment cultures and anaerobic microcosms were initiated with alkaline waters found at three geographically and geochemically distinct sites of active serpentinization. These include the Northern Apennine ophiolite in the Ligurian region of Italy, the Tablelands ophiolite at Gros Morne National Park, Canada and the Coast Range ophiolite at McLaughlin Natural Reserve, California. Enrichment cultures at pH 11 yielded numerous isolates related to Proteobacteria and Firmicutes, some of which are closely related to other cultivars from high pH and subsurface environments. Anaerobic water samples were amended with combinations of electron donors (hydrogen, complex organics, acetate) and acceptors (ferric iron, sulfate) in a block design. After several weeks of incubation, DNA was extracted from cell concentrations and community differences were compared by TRFLP. Of particular interest is the isolation of a putative iron reducing Firmicute from samples enriched with complex organic compounds and ferric citrate. Ongoing studies are aimed at characterizing the physiology of these isolates. These data provide important insights into the metabolic potential of serpentinite subsurface ecosystems, and are a complement to culture-independent genomic analyses.

Physical Properties Data for Rock Salt

DTIC Science & Technology

1981-01-01

11 M ineralogy and Petrology ..................................................... 14 Fluid Inclusions...14 1.4. Mineralog and Petrology ........................................................... 14...StatesGulfCoast arealso poorly known. Most oil- before it is no longer considered to be halite is a subject- well drilling is terminated when the salt beds are

Microbial Metabolism in Serpentinite Fluids

NASA Astrophysics Data System (ADS)

Crespo-Medina, M.; Brazelton, W. J.; Twing, K. I.; Kubo, M.; Hoehler, T. M.; Schrenk, M. O.

2013-12-01

Serpentinization is the process in which ultramafic rocks, characteristic of the upper mantle, react with water liberating mantle carbon and reducing power to potenially support chemosynthetic microbial communities. These communities may be important mediators of carbon and energy exchange between the deep Earth and the surface biosphere. Our work focuses on the Coast Range Ophiolite Microbial Observatory (CROMO) in Northern California where subsurface fluids are accessible through a series of wells. Preliminary analyses indicate that the highly basic fluids (pH 9-12) have low microbial diversity, but there is limited knowledge about the metabolic capabilities of these communties. Metagenomic data from similar serpentine environments [1] have identified Betaproteobacteria belonging to the order Burkholderiales and Gram-positive bacteria from the order Clostridiales as key components of the serpentine microbiome. In an effort to better characterize the microbial community, metabolism, and geochemistry at CROMO, fluids from two representative wells (N08B and CSWold) were sampled during recent field campaigns. Geochemical characterization of the fluids includes measurements of dissolved gases (H2, CO, CH4), dissolved inorganic and organic carbon, volatile fatty acids, and nutrients. The wells selected can be differentiated in that N08B had higher pH (10-11), lower dissolved oxygen, and cell counts ranging from 105-106 cells mL-1 of fluid, with an abundance of the betaproteobacterium Hydrogenophaga. In contrast, fluids from CSWold have slightly lower pH (9-9.5), DO, and conductivity, as well as higher TDN and TDP. CSWold fluid is also characterized for having lower cell counts (~103 cells mL-1) and an abundance of Dethiobacter, a taxon within the phylum Clostridiales. Microcosm experiments were conducted with the purpose of monitoring carbon fixation, methanotrophy and metabolism of small organic compounds, such as acetate and formate, while tracing changes in fluid chemistry and microbial community composition. These experiments are expected to provide insight into the biogeochemical dynamics of the serpentinite subsurface at CROMO and represent a first step for developing metatranscriptomic and RNA-based Stable Isotope Probing (RNA-SIP) experiments to trace microbial activity at this site. [1] Brazelton et al. (2012) Frontiers in Microbiology 2:268

Using Image Analysis to Explore Changes In Bacterial Mat Coverage at the Base of a Hydrothermal Vent within the Caldera of Axial Seamount

NASA Astrophysics Data System (ADS)

Knuth, F.; Crone, T. J.; Marburg, A.

2017-12-01

The Ocean Observatories Initiative's (OOI) Cabled Array is delivering real-time high-definition video data from an HD video camera (CAMHD), installed at the Mushroom hydrothermal vent in the ASHES hydrothermal vent field within the caldera of Axial Seamount, an active submarine volcano located approximately 450 kilometers off the coast of Washington at a depth of 1,542 m. Every three hours the camera pans, zooms and focuses in on nine distinct scenes of scientific interest across the vent, producing 14-minute-long videos during each run. This standardized video sampling routine enables scientists to programmatically analyze the content of the video using automated image analysis techniques. Each scene-specific time series dataset can service a wide range of scientific investigations, including the estimation of bacterial flux into the system by quantifying chemosynthetic bacterial clusters (floc) present in the water column, relating periodicity in hydrothermal vent fluid flow to earth tides, measuring vent chimney growth in response to changing hydrothermal fluid flow rates, or mapping the patterns of fauna colonization, distribution and composition across the vent over time. We are currently investigating the seventh scene in the sampling routine, focused on the bacterial mat covering the seafloor at the base of the vent. We quantify the change in bacterial mat coverage over time using image analysis techniques, and examine the relationship between mat coverage, fluid flow processes, episodic chimney collapse events, and other processes observed by Cabled Array instrumentation. This analysis is being conducted using cloud-enabled computer vision processing techniques, programmatic image analysis, and time-lapse video data collected over the course of the first CAMHD deployment, from November 2015 to July 2016.

Gas-water-rock interactions in Frio Formation following CO2 injection: Implications for the storage of greenhouse gases in sedimentary basins

USGS Publications Warehouse

Kharaka, Yousif K.; Cole, David R.; Hovorka, Susan D.; Gunter, W.D.; Knauss, Kevin G.; Freifeild, Barry M.

2006-01-01

To investigate the potential for the geologic storage of CO2 in saline sedimentary aquifers, 1600 t of CO2 were injected at 1500 m depth into a 24-m-thick sandstone section of the Frio Formation, a regional brine and oil reservoir in the U.S. Gulf Coast. Fluid samples obtained from the injection and observation wells before CO2 injection showed a Na-Ca-Cl–type brine with 93,000 mg/L total dissolved solids (TDS) at near saturation with CH4 at reservoir conditions. Following CO2 breakthrough, samples showed sharp drops in pH (6.5–5.7), pronounced increases in alkalinity (100–3000 mg/L as HCO3) and Fe (30–1100 mg/L), and significant shifts in the isotopic compositions of H2O, dissolved inorganic carbon (DIC), and CH4. Geochemical modeling indicates that brine pH would have dropped lower but for the buffering by dissolution of carbonate and iron oxyhydroxides. This rapid dissolution of carbonate and other minerals could ultimately create pathways in the rock seals or well cements for CO2 and brine leakage. Dissolution of minerals, especially iron oxyhydroxides, could mobilize toxic trace metals and, where residual oil or suitable organics are present, the injected CO2 could also mobilize toxic organic compounds. Environmental impacts could be major if large brine volumes with mobilized toxic metals and organics migrated into potable groundwater. The δ18O values for brine and CO2 samples indicate that supercritical CO2 comprises ∼50% of pore-fluid volume ∼6 mo after the end of injection. Postinjection sampling, coupled with geochemical modeling, indicates that the brine gradually will return to its preinjection composition.

On-Track Testing as a Validation Method of Computational Fluid Dynamic Simulations of a Formula SAE Vehicle

NASA Astrophysics Data System (ADS)

Weingart, Robert

This thesis is about the validation of a computational fluid dynamics simulation of a ground vehicle by means of a low-budget coast-down test. The vehicle is built to the standards of the 2014 Formula SAE rules. It is equipped with large wings in the front and rear of the car; the vertical loads on the tires are measured by specifically calibrated shock potentiometers. The coast-down test was performed on a runway of a local airport and is used to determine vehicle specific coefficients such as drag, downforce, aerodynamic balance, and rolling resistance for different aerodynamic setups. The test results are then compared to the respective simulated results. The drag deviates about 5% from the simulated to the measured results. The downforce numbers show a deviation up to 18% respectively. Moreover, a sensitivity analysis of inlet velocities, ride heights, and pitch angles was performed with the help of the computational simulation.

Fire History in Coast Redwood Stands in San Mateo County Parks and Jasper Ridge, Santa Cruz Mountains

Treesearch

Scott L. Stephens; Danny L. Fry

2007-01-01

Fire regimes in coast redwood forests in the northeastern Santa Cruz Mountains were determined by ring counts from 46 coast redwood stumps and live trees. The earliest recorded fire from two live samples was in 1615 and the last fire recorded was in 1884, although samples were not crossdated. For all sites combined, the mean fire return interval (FRI) was 12.0 years;...

Fluid sampling tool

DOEpatents

Garcia, Anthony R.; Johnston, Roger G.; Martinez, Ronald K.

2000-01-01

A fluid-sampling tool for obtaining a fluid sample from a container. When used in combination with a rotatable drill, the tool bores a hole into a container wall, withdraws a fluid sample from the container, and seals the borehole. The tool collects fluid sample without exposing the operator or the environment to the fluid or to wall shavings from the container.

Fluid sampling system for a nuclear reactor

DOEpatents

Lau, Louis K.; Alper, Naum I.

1994-01-01

A system of extracting fluid samples, either liquid or gas, from the interior of a nuclear reactor containment utilizes a jet pump. To extract the sample fluid, a nonradioactive motive fluid is forced through the inlet and discharge ports of a jet pump located outside the containment, creating a suction that draws the sample fluid from the containment through a sample conduit connected to the pump suction port. The mixture of motive fluid and sample fluid is discharged through a return conduit to the interior of the containment. The jet pump and means for removing a portion of the sample fluid from the sample conduit can be located in a shielded sample grab station located next to the containment. A non-nuclear grade active pump can be located outside the grab sampling station and the containment to pump the nonradioactive motive fluid through the jet pump.

Fluid sampling system for a nuclear reactor

DOEpatents

Lau, L.K.; Alper, N.I.

1994-11-22

A system of extracting fluid samples, either liquid or gas, from the interior of a nuclear reactor containment utilizes a jet pump. To extract the sample fluid, a nonradioactive motive fluid is forced through the inlet and discharge ports of a jet pump located outside the containment, creating a suction that draws the sample fluid from the containment through a sample conduit connected to the pump suction port. The mixture of motive fluid and sample fluid is discharged through a return conduit to the interior of the containment. The jet pump and means for removing a portion of the sample fluid from the sample conduit can be located in a shielded sample grab station located next to the containment. A non-nuclear grade active pump can be located outside the grab sampling station and the containment to pump the nonradioactive motive fluid through the jet pump. 1 fig.

Petrogenesis of Franciscan Complex and Coast Range Ophiolite Serpentinites in northern California

NASA Astrophysics Data System (ADS)

Eldam, R.; Barnes, J.; Lee, C.; Errico, J. C.; Loewy, S. L.; Cisneros, M.

2012-12-01

Franciscan Complex serpentinites have been interpreted as eroded pieces of the overriding Coast Range Ophiolite (CRO), off-scraped pieces of the subducting oceanic plate, and as sedimentary serpentinites (e.g., Wakabayashi, 2004); however, most of these interpretations are based on tectonic models and field relationships. Here we present bulk rock major and trace element geochemistry, pyroxene and spinel geochemistry, and stable isotope data (O, H, Cl) for serpentinite samples with the goal of determining protolith origin and subsequent serpentinizing fluid sources of several metasomatized Franciscan and CRO ultramafic rocks in order to decipher the tectonic setting of serpentinization. We focused on serpentinite bodies found in the Franciscan Complex (west of Cuesta Ridge; south of San Francisco; Tiburon Peninsula; Healdsburg) (n = 12). Three samples from Cuesta Ridge (CRO) were also analyzed for comparison. All samples are >~95% serpentinized and consist of lizardite +/- chrysotile. Relict grains are rarely preserved. Franciscan serpentinites (Tiburon Peninsula, west of Cuesta Ridge) show positive-sloped REE patterns. This depletion in LREE is typical of abyssal peridotites. Relict clinopyroxenes from Tiburon Peninsula have high HREE concentrations, also supporting an abyssal origin. 2 of the 3 samples from the Cuesta Ridge show flat REE patterns; whereas, one is U-shaped. This enrichment in LREE is similar to forearc peridotites. Spinels from Cuesta Ridge have Cr# > 0.60 also implying a forearc setting; whereas, Franciscan localities have typically have lower Cr# (0.21 to 0.51). All samples show remarkable positive Ce and Y anomalies. We speculate that these anomalies may be due to interaction with ferromanganese nodules and crusts (also high in Ce and Y) on the seafloor prior to subduction. Cuesta Ridge samples have δ18O values between +6.0 to +6.6‰. Franciscan serpentinites (except those south of San Francisco) have δ18O values of +5.4 to +7.9‰. These δ18O values are similar to typical oceanic serpentinites and likely represent low-T seawater hydration on the seafloor. δD values of all samples are extremely low (-107 to -90‰) and likely result from post-serpentinization, post-emplacement interaction with meteoric water at low temperature. Samples south of San Francisco lie on the San Andreas fault and have high δ18O values (+7.2 to +9.5‰) and low δD values (-107 to -104‰) likely due to low-T interaction with meteoric water at high fluid-rock ratios. Most of the serpentinites (12 of the 15) have δ37Cl values between +0.2 and +0.9‰, typical values for serpentinites formed by interaction with seawater. Based on bulk rock geochemistry and pyroxene and spinel compositions, serpentinites located within the Franciscan Complex have geochemical characteristics of abyssal peridotites; whereas, those from Cuesta Ridge are more chemically heterogeneous with most having affinity to forearc peridotites. All stable isotope geochemistry indicates seafloor serpentinization by seawater. Wakabayashi, J., 2004, International Geology Review, 46, 1103-1118.

Neurobrucellosis in Stranded Dolphins, Costa Rica

PubMed Central

Hernández-Mora, Gabriela; González-Barrientos, Rocío; Morales, Juan-Alberto; Chaves-Olarte, Esteban; Guzmán-Verri, Caterina; Baquero-Calvo, Elías; De-Miguel, María-Jesús; Marín, Clara-María; Blasco, José-María

2008-01-01

Ten striped dolphins, Stenella coeruleoalba, stranded along the Costa Rican Pacific coast, had meningoencephalitis and antibodies against Brucella spp. Brucella ceti was isolated from cerebrospinal fluid of 6 dolphins and 1 fetus. S. coeruleoalba constitutes a highly susceptible host and a potential reservoir for B. ceti transmission. PMID:18760012

46 CFR 56.30-3 - Piping joints (reproduces 110).

Code of Federal Regulations, 2011 CFR

2011-10-01

... 46 Shipping 2 2011-10-01 2011-10-01 false Piping joints (reproduces 110). 56.30-3 Section 56.30-3 Shipping COAST GUARD, DEPARTMENT OF HOMELAND SECURITY (CONTINUED) MARINE ENGINEERING PIPING SYSTEMS AND... joint tightness, mechanical strength and the nature of the fluid handled. ...

46 CFR 56.30-3 - Piping joints (reproduces 110).

Code of Federal Regulations, 2013 CFR

2013-10-01

... 46 Shipping 2 2013-10-01 2013-10-01 false Piping joints (reproduces 110). 56.30-3 Section 56.30-3 Shipping COAST GUARD, DEPARTMENT OF HOMELAND SECURITY (CONTINUED) MARINE ENGINEERING PIPING SYSTEMS AND... joint tightness, mechanical strength and the nature of the fluid handled. ...

46 CFR 56.30-3 - Piping joints (reproduces 110).

Code of Federal Regulations, 2010 CFR

2010-10-01

... 46 Shipping 2 2010-10-01 2010-10-01 false Piping joints (reproduces 110). 56.30-3 Section 56.30-3 Shipping COAST GUARD, DEPARTMENT OF HOMELAND SECURITY (CONTINUED) MARINE ENGINEERING PIPING SYSTEMS AND... joint tightness, mechanical strength and the nature of the fluid handled. ...

46 CFR 56.30-3 - Piping joints (reproduces 110).

Code of Federal Regulations, 2012 CFR

2012-10-01

... 46 Shipping 2 2012-10-01 2012-10-01 false Piping joints (reproduces 110). 56.30-3 Section 56.30-3 Shipping COAST GUARD, DEPARTMENT OF HOMELAND SECURITY (CONTINUED) MARINE ENGINEERING PIPING SYSTEMS AND... joint tightness, mechanical strength and the nature of the fluid handled. ...

46 CFR 56.30-3 - Piping joints (reproduces 110).

Code of Federal Regulations, 2014 CFR

2014-10-01

... 46 Shipping 2 2014-10-01 2014-10-01 false Piping joints (reproduces 110). 56.30-3 Section 56.30-3 Shipping COAST GUARD, DEPARTMENT OF HOMELAND SECURITY (CONTINUED) MARINE ENGINEERING PIPING SYSTEMS AND... joint tightness, mechanical strength and the nature of the fluid handled. ...

46 CFR 56.15-5 - Fluid-conditioner fittings.

Code of Federal Regulations, 2010 CFR

2010-10-01

... Class I, I-L, and II-L systems receiving ship motion dynamic analysis and nondestructive examination. For Class I, I-L, or II-L systems not receiving ship motion dynamic analysis and nondestructive... Shipping COAST GUARD, DEPARTMENT OF HOMELAND SECURITY (CONTINUED) MARINE ENGINEERING PIPING SYSTEMS AND...

Carbonate cements indicate channeled fluid flow along a zone of vertical faults at the deformation front of the Cascadia accretionary wedge (northwest U.S. coast)

NASA Astrophysics Data System (ADS)

Sample, James C.; Reid, Mary R.; Tols, Harold J.; Moore, J. Casey

1993-06-01

To understand the relation between fluid seeps and structures, sedimentary rocks were collected with the DSRV Alvin from a vertical fault zone that transects the deformation front of the Cascadia accretionary wedge. The rocks contained diagenetic carbonate cement that was precipitated from fluids expelled during accretion. Carbon, oxygen, and strontium isotope data are consistent with a fluid source at >2 km depth. Most carbon isotopes range from -1‰ to -25‰ (PDB [Peedee belemnitel] standard) consistent with a thermogenic methane source. Oxygen isotopes show extreme 18O depletions (-4‰ to -13‰ PDB) that are consistent with precipitation from fluids with temperatures as high as 100 °C. 87Sr/86Sr values of 0.70975 to 0.71279 may be due to strontium in fluids derived from clay-rich parts of the stratigraphic section. The ubiquity of carbonate precipitates and the isotope data indicate that the vertical fault zone is an efficient conduit for fluid dewatering from deep levels of the accretionary wedge.

46 CFR 61.30-10 - Hydrostatic test.

Code of Federal Regulations, 2012 CFR

2012-10-01

... 46 Shipping 2 2012-10-01 2012-10-01 false Hydrostatic test. 61.30-10 Section 61.30-10 Shipping COAST GUARD, DEPARTMENT OF HOMELAND SECURITY (CONTINUED) MARINE ENGINEERING PERIODIC TESTS AND INSPECTIONS Tests and Inspections of Fired Thermal Fluid Heaters § 61.30-10 Hydrostatic test. All new...

Genetic signature analysis of Perkinsus marinus in Mexico suggests possible translocation from the Atlantic Ocean to the Pacific coast of Mexico.

PubMed

Ek-Huchim, Juan Pablo; Aguirre-Macedo, Ma Leopoldina; Améndola-Pimenta, Monica; Vidal-Martínez, Victor Manuel; Pérez-Vega, Juan Antonio; Simá-Alvarez, Raúl; Jiménez-García, Isabel; Zamora-Bustillos, Roberto; Rodríguez-Canul, Rossanna

2017-08-02

The protozoan Perkinsus marinus (Mackin, Owen & Collier) Levine, 1978 causes perkinsosis in the American oyster Crassostrea virginica Gmelin, 1791. This pathogen is present in cultured C. virginica from the Gulf of Mexico and has been reported recently in Saccostrea palmula (Carpenter, 1857), Crassostrea corteziensis (Hertlein, 1951) and Crassostrea gigas (Thunberg, 1793) from the Mexican Pacific coast. Transportation of fresh oysters for human consumption and repopulation could be implicated in the transmission and dissemination of this parasite across the Mexican Pacific coast. The aim of this study was two-fold. First, we evaluated the P. marinus infection parameters by PCR and RFTM (Ray's fluid thioglycollate medium) in C. virginica from four major lagoons (Términos Lagoon, Campeche; Carmen-Pajonal-Machona Lagoon complex, Tabasco; Mandinga Lagoon, Veracruz; and La Pesca Lagoon, Tamaulipas) from the Gulf of Mexico. Secondly, we used DNA sequence analyses of the ribosomal non-transcribed spacer (rNTS) region of P. marinus to determine the possible translocation of this species from the Gulf of Mexico to the Mexican Pacific coast. Perkinsus marinus prevalence by PCR was 57.7% (338 out of 586 oysters) and 38.2% (224 out of 586 oysters) by RFTM. The highest prevalence was observed in the Carmen-Pajonal-Machona Lagoon complex in the state of Tabasco (73% by PCR and 58% by RFTM) and the estimated weighted prevalence (WP) was less than 1.0 in the four lagoons. Ten unique rDNA-NTS sequences of P. marinus [termed herein the "P. marinus (Pm) haplotype"] were identified in the Gulf of Mexico sample. They shared 96-100% similarity with 18 rDNA-NTS sequences from the GenBank database which were derived from 16 Mexican Pacific coast infections and two sequences from the USA. The phylogenetic tree and the haplotype network showed that the P. marinus rDNA-NTS sequences from Mexico were distant from the rDNA-NTS sequences of P. marinus reported from the USA. The ten rDNA-NTS sequences described herein were restricted to specific locations displaying different geographical connections within the Gulf of Mexico; the Carmen-Pajonal-Machona Pm1 haplotype from the state of Tabasco shared a cluster with P. marinus isolates reported from the Mexican Pacific coast. The rDNA-NTS sequences of P. marinus from the state of Tabasco shared high similarity with the reference rDNA-NTS sequences from the Mexican Pacific coast. The high similarity suggests a transfer of oysters infected with P. marinus from the Mexican part of the Gulf of Mexico into the Mexican Pacific coast.

Method of absorbance correction in a spectroscopic heating value sensor

DOEpatents

Saveliev, Alexei; Jangale, Vilas Vyankatrao; Zelepouga, Sergeui; Pratapas, John

2013-09-17

A method and apparatus for absorbance correction in a spectroscopic heating value sensor in which a reference light intensity measurement is made on a non-absorbing reference fluid, a light intensity measurement is made on a sample fluid, and a measured light absorbance of the sample fluid is determined. A corrective light intensity measurement at a non-absorbing wavelength of the sample fluid is made on the sample fluid from which an absorbance correction factor is determined. The absorbance correction factor is then applied to the measured light absorbance of the sample fluid to arrive at a true or accurate absorbance for the sample fluid.

Fluid sampling device

NASA Technical Reports Server (NTRS)

Studenick, D. K. (Inventor)

1977-01-01

An inlet leak is described for sampling gases, more specifically, for selectively sampling multiple fluids. This fluid sampling device includes a support frame. A plurality of fluid inlet devices extend through the support frame and each of the fluid inlet devices include a longitudinal aperture. An opening device that is responsive to a control signal selectively opens the aperture to allow fluid passage. A closing device that is responsive to another control signal selectively closes the aperture for terminating further fluid flow.

Mid-Atlantic Microtidal Barrier Coast Classification.

DTIC Science & Technology

1983-05-01

subregions A through F. APPENDIX A. BIGDAT data file for the 800 sample sites along the coast, and strike-parallel plots of this data. i C 4 FLIST OF FIGURES...from this data set as follows: 1) BIGDAT - the entire coast at 1-km intervals, including areas peripheral to inlets and capes (n - 800); 2) INLETR2 - the...in Table 5. The Entire Coast at 1-km Intervals ( BIGDAT and fINLETRZ Correlation analysis of the 15 variables for the entire coast at 1-km intervals

Polycyclic aromatic hydrocarbon (PAHs) and hopanes in stranded tar-balls on the coasts of Peninsular Malaysia: applications of biomarkers for identifying sources of oil pollution.

PubMed

Zakaria, M P; Okuda, T; Takada, H

2001-12-01

Malaysian coasts are subjected to various threats of petroleum pollution including routine and accidental oil spill from tankers, spillage of crude oils from inland and off-shore oil fields, and run-off from land-based human activities. Due to its strategic location, the Straits of Malacca serves as a major shipping lane. This paper expands the utility of biomarker compounds, hopanes, in identifying the source of tar-balls stranded on Malaysian coasts. 20 tar-ball samples collected from the east and west coast were analyzed for hopanes and polycyclic aromatic hydrocarbons (PAHs). Four of the 13 tar-ball samples collected from the west coast of Peninsular Malaysia were identified as the Middle East crude oil (MECO) based on their biomarker signatures, suggesting tanker-derived sources significantly contributing the petroleum pollution in the Straits of Malacca. The tar-balls found on the east coast seem to originate from the offshore oil platforms in the South China Sea. The presence of South East Asian crude oil (SEACO) tar-balls on the west coast carry several plausible explanations. Some of the tar-balls could have been transported via sea currents from the east coast. The tankers carrying SEACO to other countries could have accidentally spilt the oil as well. Furthermore, discharge of tank washings and ballast water from the tankers were suggested based on the abundance in higher molecular weight n-alkanes and the absence of unresolved complex mixture (UCM) in the tar-ball samples. The other possibilities are that the tar-balls may have been originated from the Sumatran oil fields and spillage of domestic oil from oil refineries in Port Dickson and Malacca. The results of PAHs analysis suggest that all the tar-ball samples have undergone various extent of weathering through evaporation, dissolution and photooxidation.

46 CFR 58.30-40 - Plans.

Code of Federal Regulations, 2010 CFR

2010-10-01

... 46 Shipping 2 2010-10-01 2010-10-01 false Plans. 58.30-40 Section 58.30-40 Shipping COAST GUARD... SYSTEMS Fluid Power and Control Systems § 58.30-40 Plans. (a) Diagrammatic plans and lists of materials... installed on the vessel. Plan submission must be in accordance with subpart 50.20 of this subchapter and...

Compendium of marine luminescence signatures, part 2 (appendix C)

NASA Technical Reports Server (NTRS)

Hornig, A. W.; Eastwood, D.

1973-01-01

Chlorophyll and Gelbstoff excitation and emission spectra of sea water samples are assembled according to geographic sites from the Atlantic and Gulf coasts, the west coast, and a location north of Hawaii. Data were taken by fluorescent spectrophotometer and include also laboratory algal cultures for comparison with the sea water samples.

Sampling device for withdrawing a representative sample from single and multi-phase flows

DOEpatents

Apley, Walter J.; Cliff, William C.; Creer, James M.

1984-01-01

A fluid stream sampling device has been developed for the purpose of obtaining a representative sample from a single or multi-phase fluid flow. This objective is carried out by means of a probe which may be inserted into the fluid stream. Individual samples are withdrawn from the fluid flow by sampling ports with particular spacings, and the sampling parts are coupled to various analytical systems for characterization of the physical, thermal, and chemical properties of the fluid flow as a whole and also individually.

Fluid transport container

DOEpatents

DeRoos, Bradley G.; Downing, Jr., John P.; Neal, Michael P.

1995-01-01

An improved fluid container for the transport, collection, and dispensing of a sample fluid that maintains the fluid integrity relative to the conditions of the location at which it is taken. More specifically, the invention is a fluid sample transport container that utilizes a fitment for both penetrating and sealing a storage container under controlled conditions. Additionally, the invention allows for the periodic withdrawal of portions of the sample fluid without contamination or intermixing from the environment surrounding the sample container.

Submarine paleoseismology based on turbidite records.

PubMed

Goldfinger, Chris

2011-01-01

Many of the largest earthquakes are generated at subduction zones or other plate boundary fault systems near enough to the coast that marine environments may record evidence of them. During and shortly after large earthquakes in the coastal and marine environments, a spectrum of evidence may be left behind, mirroring onshore paleoseismic evidence. Shaking or displacement of the seafloor can trigger processes such as turbidity currents, submarine landslides, tsunami (which may be recorded both onshore and offshore), and soft-sediment deformation. Marine sites may also share evidence of fault scarps, colluvial wedges, offset features, and liquefaction or fluid expulsion with their onshore counterparts. This article reviews the use of submarine turbidite deposits for paleoseismology, focuses on the dating and correlation techniques used to establish stratigraphic continuity of marine deposits, and outlines criteria for distinguishing earthquake deposits and the strategies used to acquire suitable samples and data for marine paleoseismology.

Offline solid phase microextraction sampling system

DOEpatents

Harvey, Chris A.

2008-12-16

An offline solid phase microextraction (SPME) sampling apparatus for enabling SPME samples to be taken a number of times from a previously collected fluid sample (e.g. sample atmosphere) stored in a fused silica lined bottle which keeps volatile organics in the fluid sample stable for weeks at a time. The offline SPME sampling apparatus has a hollow body surrounding a sampling chamber, with multiple ports through which a portion of a previously collected fluid sample may be (a) released into the sampling chamber, (b) SPME sampled to collect analytes for subsequent GC analysis, and (c) flushed/purged using a fluidically connected vacuum source and purging fluid source to prepare the sampling chamber for additional SPME samplings of the same original fluid sample, such as may have been collected in situ from a headspace.

Oral fluid vs. Urine Analysis to Monitor Synthetic Cannabinoids and Classic Drugs Recent Exposure

PubMed Central

Blandino, Vincent; Wetzel, Jillian; Kim, Jiyoung; Haxhi, Petrit; Curtis, Richard; Concheiro, Marta

2018-01-01

Background Urine is a common biological sample to monitor recent drug exposure, and oral fluid is an alternative matrix of increasing interest in clinical and forensic toxicology. Limited data are available about oral fluid vs. urine drug disposition, especially for synthetic cannabinoids. Objective To compare urine and oral fluid as biological matrices to monitor recent drug exposure among HIV-infected homeless individuals. Methods Seventy matched urine and oral fluid samples were collected from 13 participants. Cannabis, amphetamines, benzodiazepines, cocaine and opiates were analyzed in urine by the enzyme-multiplied-immunoassay-technique and in oral fluid by liquid chromatography tandem mass spectrometry (LC-MSMS). Eleven synthetic cannabinoids were analyzed in urine and in oral fluid by LC-MSMS. Results Five oral fluid samples were positive for AB-FUBINACA. In urine, 4 samples tested positive for synthetic cannabinoids PB-22, 5-Fluoro-PB-22, AB-FUBINACA, and metabolites UR-144 5-pentanoic acid and UR-144 4-hydroxypentyl. In only one case, oral fluid and urine results matched, both specimens being AB-FUBINACA positive. For cannabis, 40 samples tested positive in urine and 30 in oral fluid (85.7% match). For cocaine, 37 urine and 52 oral fluid samples were positive (75.7% match). Twenty-four urine samples were positive for opiates, and 25 in oral fluid (81.4% match). For benzodiazepines, 23 samples were positive in urine and 25 in oral fluid (85.7% match). Conclusion/Discussion These results offer new information about drugs disposition between urine and oral fluid. Oral fluid is a good alternative matrix to urine for monitoring cannabis, cocaine, opiates and benzodiazepines recent use; however, synthetic cannabinoids showed mixed results. PMID:29173162

Oral Fluid vs. Urine Analysis to Monitor Synthetic Cannabinoids and Classic Drugs Recent Exposure.

PubMed

Blandino, Vincent; Wetzel, Jillian; Kim, Jiyoung; Haxhi, Petrit; Curtis, Richard; Concheiro, Marta

2017-01-01

Urine is a common biological sample to monitor recent drug exposure, and oral fluid is an alternative matrix of increasing interest in clinical and forensic toxicology. Limited data are available about oral fluid vs. urine drug disposition, especially for synthetic cannabinoids. To compare urine and oral fluid as biological matrices to monitor recent drug exposure among HIV-infected homeless individuals. Seventy matched urine and oral fluid samples were collected from 13 participants. Cannabis, amphetamines, benzodiazepines, cocaine and opiates were analyzed in urine by the enzyme-multipliedimmunoassay- technique and in oral fluid by liquid chromatography tandem mass spectrometry (LCMSMS). Eleven synthetic cannabinoids were analyzed in urine and in oral fluid by LC-MSMS. Five oral fluid samples were positive for AB-FUBINACA. In urine, 4 samples tested positive for synthetic cannabinoids PB-22, 5-Fluoro-PB-22, AB-FUBINACA, and metabolites UR-144 5-pentanoic acid and UR-144 4-hydroxypentyl. In only one case, oral fluid and urine results matched, both specimens being AB-FUBINACA positive. For cannabis, 40 samples tested positive in urine and 30 in oral fluid (85.7% match). For cocaine, 37 urine and 52 oral fluid samples were positive (75.7% match). Twenty-four urine samples were positive for opiates, and 25 in oral fluid (81.4% match). For benzodiazepines, 23 samples were positive in urine and 25 in oral fluid (85.7% match). These results offer new information about drugs disposition between urine and oral fluid. Oral fluid is a good alternative matrix to urine for monitoring cannabis, cocaine, opiates and benzodiazepines recent use; however, synthetic cannabinoids showed mixed results. Copyright© Bentham Science Publishers; For any queries, please email at epub@benthamscience.org.

Distribution and quantity of microplastic on sandy beaches along the northern coast of Taiwan.

PubMed

Kunz, Alexander; Walther, Bruno A; Löwemark, Ludvig; Lee, Yao-Chang

2016-10-15

Plastic pollution is now ubiquitous in the world's oceans, and studies have shown macroplastic and microplastic pollution of beaches in several East Asian countries. However, to our knowledge, no study of microplastic pollution has been conducted in Taiwan yet. Therefore, we collected sand samples from four beaches along the northern coast of Taiwan in 2015 and extracted microplastic particles using a saturated NaCl solution. Microplastic particles were identified using synchrotron-based FTIR spectroscopy. We recovered 4 to 532 particles from eight 0.0125m(3) samples, with a total of 1097 particles weighing 0.771g. A negative trend between the size of the particles and their numbers was documented. We thus established that microplastic pollution was ubiquitous along Taiwan's northern coast. Future research should more comprehensively sample beaches around the entirety of Taiwan's coast, and special emphasis should be placed on identifying different sources and movements of microplastic. Copyright © 2016 Elsevier Ltd. All rights reserved.

Use of vitamin B12 in joint lavage for determination of dilution factors of canine synovial fluid.

PubMed

de Bruin, Tanya; de Rooster, Hilde; van Bree, Henri; Cox, Eric

2005-11-01

To test a modified saline (0.9% NaCl) solution joint washing (lavage) technique that includes the use of vitamin B12 as an internal marker for the evaluation of synovial fluid dilution in lavage samples from canine joints. 9 plasma samples obtained from blood samples of 9 healthy dogs and 9 synovial fluid samples aspirated from stifle joints of 9 cadaveric dogs. Photometric absorbances of 25% vitamin B12 solution, canine synovial fluid, and canine plasma were measured in a spectrophotometer to establish an optimal wavelength for analysis. Canine synovial fluid and plasma samples were mixed with the 25% vitamin B12 solution to obtain 1%, 3%, 5%, 10%, 20%, and 50% solutions of synovial fluid or plasma. Diluted synovial fluid and plasma samples were used to simulate joint lavage samples and to examine the possible interference of these substances (synovial fluid or plasma) with the absorbance of the 25% vitamin B12 solution in photometric analysis. The optimal wavelength was found to be at 550 nm. Canine synovial fluid and plasma samples did not interfere with the absorbance measurements of the 25% vitamin B12 solution up to a 50% dilution of plasma or synovial fluid. The modified saline solution joint lavage method with the use of a 25% vitamin B12 solution as an internal standard provides an accurate and reliable technique for the evaluation of synovial fluid dilution in lavage samples from canine joints.

Sporting Good Lubricants

NASA Technical Reports Server (NTRS)

1997-01-01

Sun Coast Chemicals was originally contracted by Lockheed Martin Space Operations to formulate a spray lubricant free of environmental drawbacks for the Mobile Launch Platform used to haul the Space Shuttle from the Kennedy Space Center Vehicle Assembly Building to a launch pad. From this work, Sun Coast introduced Train Track Lubricant, Penetrating Spray Lube, and Biodegradable Hydraulic Fluid. Based on the original lubricant work, two more products have also been introduced. First, the X-1R Super Gun Cleaner and Lubricant protects guns from rust and corrosion caused by environmental conditions. Second, the X-1R Tackle Pack, endorsed by both fresh and saltwater guides and certain reel manufacturers, penetrates, cleans, reduces friction, lubricates, and provides extra protection against rust and corrosion.

Water-quality assessment of the Trinity River basin, Texas : ground-water quality of the Trinity, Carrizo-Wilcox, and Gulf Coast aquifers, February-August 1994

USGS Publications Warehouse

Reutter, David C.; Dunn, David D.

2000-01-01

Ground-water samples were collected from wells in the outcrops of the Trinity, Carrizo-Wilcox, and Gulf Coast aquifers during February-August 1994 to determine the quality of ground water in the three major aquifers in the Trinity River Basin study unit, Texas. These samples were collected and analyzed for selected properties, nutrients, major inorganic constituents, trace elements, pesticides, dissolved organic carbon, total phenols, methylene blue active substances, and volatile organic compounds as part of the U.S. Geological Survey National Water-Quality Assessment Program. Quality-control practices included the collection and analysis of blank, duplicate, and spiked samples. Samples were collected from 12 shallow wells (150 feet or less) and from 12 deep wells (greater than 150 feet) in the Trinity aquifer, 11 shallow wells and 12 deep wells in the Carrizo-Wilcox aquifer, and 14 shallow wells and 10 deep wells in the Gulf Coast aquifer. The three aquifers had similar water chemistries-calcium was the dominant cation and bicarbonate the dominant anion. Statistical tests relating well depths to concentrations of nutrients and major inorganic constituents indicated correlations between well depth and concentrations of ammonia nitrogen, nitrite plus nitrate nitrogen, bicarbonate, sodium, and dissolved solids in the Carrizo-Wilcox aquifer and between well depth and concentrations of sulfate in the Gulf Coast aquifer. The tests indicated no significant correlations for the Trinity aquifer. Concentrations of dissolved solids were larger than the secondary maximum contaminant level of 500 milligrams per liter established for drinking water by the U.S. Environmental Protection Agency in 12 wells in the Trinity aquifer, 4 wells in the Carrizo-Wilcox aquifer, and 6 wells in the Gulf Coast aquifer. Iron concentrations were larger than the secondary maximum contaminant level of 300 micrograms per liter in at least 3 samples from each aquifer, and manganese concentrations were larger than the secondary maximum contaminant level of 50 micrograms per liter in at least 2 samples from each aquifer. The pesticides atrazine, deethylatrazine, and pp'-DDE were detected in at least one sample from each aquifer. Diazinon was detected in 11 Trinity aquifer samples and 4 Carrizo-Wilcox aquifer samples. Each aquifer had one detection of a volatile organic compound-benzene in the Trinity aquifer, trichlorofluoromethane in the Carrizo-Wilcox aquifer, and trichloromethane in the Gulf Coast aquifer.

Infectivity and transmission of Xylella fastidiosa Salento strain by Philaenus spumarius L. (Hemiptera: Aphrophoridae) in Apulia, Italy

USDA-ARS?s Scientific Manuscript database

Discovery of X. fastidiosa from olive trees with “Olive quick decline syndrome" (OQDS) in October 2013 on the western coast of the Salento Peninsula prompted an immediate search for insect vectors of the bacterium. The dominant xylem-fluid feeding hemipteran collected in olive orchards was the meado...

46 CFR 61.30-20 - Automatic control and safety tests.

Code of Federal Regulations, 2012 CFR

2012-10-01

... 46 Shipping 2 2012-10-01 2012-10-01 false Automatic control and safety tests. 61.30-20 Section 61.30-20 Shipping COAST GUARD, DEPARTMENT OF HOMELAND SECURITY (CONTINUED) MARINE ENGINEERING PERIODIC TESTS AND INSPECTIONS Tests and Inspections of Fired Thermal Fluid Heaters § 61.30-20 Automatic control and safety tests. Operational tests and check...

A deep sea Hydrothermal Vent Bio-sampler for large volume in-situ filtration of hydrothermal vent fluids

NASA Technical Reports Server (NTRS)

Behar, Alberto; Matthews, Jaret; Venkateswaran, Kasthuri; Bruckner, James; Basic, Goran; So, Edmond; Rivadeneyra, Cesar

2005-01-01

This paper provides a physical description of the current system, as well as a summary of the preliminary tests conducted in 2005: a pressure chamber test, a dive test in a 30 foot dive pool, and a dive operation at a hydrothermal vent off the northern coast of Iceland.

Influence of water temperature and salinity on Vibrio vulnificus in Northern Gulf and Atlantic Coast oysters (Crassostrea virginica).

PubMed

Motes, M L; DePaola, A; Cook, D W; Veazey, J E; Hunsucker, J C; Garthright, W E; Blodgett, R J; Chirtel, S J

1998-04-01

This study investigated the temperature and salinity parameters associated with waters and oysters linked to food-borne Vibrio vulnificus infections. V. vulnificus was enumerated in oysters collected at three northern Gulf Coast sites and two Atlantic Coast sites from July 1994 through September 1995. Two of these sites, Black Bay, La., and Apalachicola Bay, Fla., are the source of the majority of the oysters implicated in V. vulnificus cases. Oysters in all Gulf Coast sites exhibited a similar seasonal distribution of V. vulnificus: a consistently large number (median concentration, 2,300 organisms [most probable number] per g of oyster meat) from May through October followed by a gradual reduction during November and December to < or = 10 per g, where it remained from January through mid-March, and a sharp increase in late March and April to summer levels. V. vulnificus was undetectable (< 3 per g) in oysters from the North and South Carolina sites for most of the year. An exception occurred when a late-summer flood caused a drop in salinity in the North Carolina estuary, apparently causing V. vulnificus numbers to increase briefly to Gulf Coast levels. At Gulf Coast sites, V. vulnificus numbers increased with water temperatures up to 26 degrees C and were constant at higher temperatures. High V. vulnificus levels (> 10(3) per g) were typically found in oysters from intermediate salinities (5 to 25 ppt). Smaller V. vulnificus numbers (< 10(2) per g) were found at salinities above 28 ppt, typical of Atlantic Coast sites. On 11 occasions oysters were sampled at times and locations near the source of oysters implicated in 13 V. vulnificus cases; the V. vulnificus levels and environmental parameters associated with these samples were consistent with those of other study samples collected from the Gulf Coast from April through November. These findings suggest that the hazard of V. vulnificus infection is not limited to brief periods of unusual abundance of V. vulnificus in Gulf Coast oysters or to environmental conditions that are unusual to Gulf Coast estuaries.

Influence of Water Temperature and Salinity on Vibrio vulnificus in Northern Gulf and Atlantic Coast Oysters (Crassostrea virginica)

PubMed Central

Motes, M. L.; DePaola, A.; Cook, D. W.; Veazey, J. E.; Hunsucker, J. C.; Garthright, W. E.; Blodgett, R. J.; Chirtel, S. J.

1998-01-01

This study investigated the temperature and salinity parameters associated with waters and oysters linked to food-borne Vibrio vulnificus infections. V. vulnificus was enumerated in oysters collected at three northern Gulf Coast sites and two Atlantic Coast sites from July 1994 through September 1995. Two of these sites, Black Bay, La., and Apalachicola Bay, Fla., are the source of the majority of the oysters implicated in V. vulnificus cases. Oysters in all Gulf Coast sites exhibited a similar seasonal distribution of V. vulnificus: a consistently large number (median concentration, 2,300 organisms [most probable number] per g of oyster meat) from May through October followed by a gradual reduction during November and December to ≤10 per g, where it remained from January through mid-March, and a sharp increase in late March and April to summer levels. V. vulnificus was undetectable (<3 per g) in oysters from the North and South Carolina sites for most of the year. An exception occurred when a late-summer flood caused a drop in salinity in the North Carolina estuary, apparently causing V. vulnificus numbers to increase briefly to Gulf Coast levels. At Gulf Coast sites, V. vulnificus numbers increased with water temperatures up to 26°C and were constant at higher temperatures. High V. vulnificus levels (>103 per g) were typically found in oysters from intermediate salinities (5 to 25 ppt). Smaller V. vulnificus numbers (<102 per g) were found at salinities above 28 ppt, typical of Atlantic Coast sites. On 11 occasions oysters were sampled at times and locations near the source of oysters implicated in 13 V. vulnificus cases; the V. vulnificus levels and environmental parameters associated with these samples were consistent with those of other study samples collected from the Gulf Coast from April through November. These findings suggest that the hazard of V. vulnificus infection is not limited to brief periods of unusual abundance of V. vulnificus in Gulf Coast oysters or to environmental conditions that are unusual to Gulf Coast estuaries. PMID:9546182

Mud Banks along the southwest coast of India are not too muddy for plankton.

PubMed

Jyothibabu, R; Balachandran, K K; Jagadeesan, L; Karnan, C; Arunpandi, N; Naqvi, S W A; Pandiyarajan, R S

2018-02-07

Considering Alappuzha Mud Bank in the southern Kerala coast as a typical case of biologically productive Mud Banks that form along the southwest coast of India during the Southwest Monsoon (June - September), the present study addresses several pertinent missing links between the physical environment in Mud Banks and their influence on plankton stock. This study showed that very strong coastal upwelling prevails in the entire study domain during the Southwest Monsoon, which manifests itself in the form of significantly cool, hypoxic and nitrate-rich waters surfacing near the coast. The upwelled water persisting throughout the Southwest Monsoon period was found to have fuelled the exceptionally high phytoplankton stock in the entire study area, including the Mud Bank region. Having accepted that Mud Banks are special because of the calm sea surface conditions and relatively high turbidity level in the water column around them, the present study showed that except at points close to the sea bottom, turbidity level in the Alappuzha Mud Bank was below the critical level to inhibit the plankton stock. The suspended sediments that form in the Mud Bank occasionally could be attributed to the disturbance of the bottom fluid muddy layer and their vertical spurts.

Optimal probes for withdrawal of uncontaminated fluid samples

NASA Astrophysics Data System (ADS)

Sherwood, J. D.

2005-08-01

Withdrawal of fluid by a composite probe pushed against the face z =0 of a porous half-space z >0 is modeled assuming incompressible Darcy flow. The probe is circular, of radius a, with an inner sampling section of radius αa and a concentric outer guard probe αa βa is saturated with fluid 2; the two fluids have the same viscosity. It is assumed that the interface between the two fluids is sharp and remains so as it moves through the rock. The pressure in the probe is lower than that of the pore fluid in the rock, so that the fluid interface is convected with the fluids towards the probe. This idealized axisymmetric problem is solved numerically, and it is shown that an analysis based on far-field spherical flow towards a point sink is a good approximation when the nondimensional depth of fluid 1 is large, i.e., β ≫1. The inner sampling probe eventually produces pure fluid 2, and this technique has been proposed for sampling pore fluids in rock surrounding an oil well [A. Hrametz, C. Gardner, M. Wais, and M. Proett, U.S. Patent No. 6,301,959 B1 (16 October 2001)]. Fluid 1 is drilling fluid filtrate, which has displaced the original pore fluid (fluid 2), a pure sample of which is required. The time required to collect an uncontaminated sample of original pore fluid can be minimized by a suitable choice of the probe geometry α [J. Sherwood, J. Fitzgerald and B. Hill, U.S. Patent No. 6,719,049 B2 (13 April 2004)]. It is shown that the optimal choice of α depends on the depth of filtrate invasion β and the volume of sample required.

An evaluation of the natural radioactivity in Andaman beach sand samples of Thailand after the 2004 tsunami.

PubMed

Malain, D; Regan, P H; Bradley, D A; Matthews, M; Al-Sulaiti, H A; Santawamaitre, T

2012-08-01

Following the 2004 'Boxing day' tsunami, a determination has been made of the activity concentrations of (226)Ra, (232)Th and (40)K in beach sand samples which have been collected from various locations along the Andaman coast of the Thai peninsula. Use has been made of a HPGe detector-based, low-background gamma-ray counting system. The natural radioactivity levels of (226)Ra, (232)Th and (40)K measured from these samples was found to lie in the range 1.6-52.5, 0.3-73.9 and 2.8-1111.9Bq/kg respectively for the west coast and 3.5-83.1, 4.5-42.0, and 9.6-1376 Bq/kg respectively for the east coast. The radioactivity concentrations of (226)Ra, (232)Th and (40)K along the Andaman coast are comparable to that of the east coast, which was not exposed to the tsunami. The corresponding annual effective dose varies from 1.6-105.9 μSv/y with a mean value of 59.1 ± 0.3 μSv/y, significantly lower than the worldwide average as reported by United Nations Scientific Committee on the Effects of Atomic Radiation (UNSCEAR) (2000). Copyright © 2012 Elsevier Ltd. All rights reserved.

Myxosporean parasites of Ceratomyxa merlangi and Myxidium gadi in whiting Merlangius merlangus: a comparative epizootiological analysis based on samples from two localities off southern and northern coasts of the Black Sea.

PubMed

Özer, A; Yurakhno, V; Öztürk, T; Kornyychuk, Y M

2017-09-01

Totally 690 and 423 whiting Merlangius merlangus samples were collected from two localities off Southern (Sinop) and Northern coasts (Balaklava Bay) of the Black Sea, respectively, and examined for myxosporeans in the period from May 2011 to March 2014. Ceratomyxa merlangi and Myxidium gadi were the only myxosporean parasites identified in the content of gall bladder and their infection indices of prevalence (%) and intensity were calculated for length classes and sex of fish as well as for the seasons at both sampling localities. Overall infection prevalence of C. merlangi was 22.6% in Sinop and 27.9% in Balaklava samples while those values of M. gadi were 18.4% and 28.6% in Sinop and Balaklava samples, respectively. Both parasite species were also found to be co-existed in whiting samples. This is the first comprehensive epizootiological study yielded comparable data on C. merlangi and M. gadi infections in whiting in the southern and northern coasts of the Black Sea.

75 FR 16002 - Drawbridge Operation Regulation; Chehalis River, Aberdeen, WA, Schedule Change

Federal Register 2010, 2011, 2012, 2013, 2014

2010-03-31

...: March 11, 2010. G.T. Blore, Rear Admiral, U.S. Coast Guard, Commander, Thirteenth Coast Guard District... standards (e.g., specifications of materials, performance, design, or operation; test methods; sampling...

46 CFR 58.30-15 - Pipe, tubing, valves, fittings, pumps, and motors.

Code of Federal Regulations, 2014 CFR

2014-10-01

... 46 Shipping 2 2014-10-01 2014-10-01 false Pipe, tubing, valves, fittings, pumps, and motors. 58.30-15 Section 58.30-15 Shipping COAST GUARD, DEPARTMENT OF HOMELAND SECURITY (CONTINUED) MARINE ENGINEERING MAIN AND AUXILIARY MACHINERY AND RELATED SYSTEMS Fluid Power and Control Systems § 58.30-15 Pipe, tubing, valves, fittings, pumps, and motors. ...

Fluid permeability measurement system and method

DOEpatents

Hallman, Jr., Russell Louis; Renner, Michael John [Oak Ridge, TN

2008-02-05

A system for measuring the permeance of a material. The permeability of the material may also be derived. The system provides a liquid or high concentration fluid bath on one side of a material test sample, and a gas flow across the opposing side of the material test sample. The mass flow rate of permeated fluid as a fraction of the combined mass flow rate of gas and permeated fluid is used to calculate the permeance of the material. The material test sample may be a sheet, a tube, or a solid shape. Operational test conditions may be varied, including concentration of the fluid, temperature of the fluid, strain profile of the material test sample, and differential pressure across the material test sample.

The Influence of Predisposing, Enabling and Need Factors on Condom Use in Ivory Coast

ERIC Educational Resources Information Center

Ngamini Ngui, Andre

2010-01-01

The main objective of this study was to identify key determinants of condom use in Ivory Coast. Data stem from Ivory Coast Demographic Health Survey (DHS) conducted by ORC Macro in 2005 among a representative sample of 9,686 persons aged 15 - 49. Following the behavioral model, we use logistic regression to assess the effect of predisposing,…

Selectivity enhancement in photoacoustic gas analysis via phase-sensitive detection at high modulation frequency

NASA Technical Reports Server (NTRS)

Kosterev, Anatoliy (Inventor)

2010-01-01

A method for detecting a target fluid in a fluid sample comprising a first fluid and the target fluid using photoacoustic spectroscopy (PAS), comprises a) providing a light source configured to introduce an optical signal having at least one wavelength into the fluid sample; b) modulating the optical signal at a desired modulation frequency such that the optical signal generates an acoustic signal in the fluid sample; c) measuring the acoustic signal in a resonant acoustic detector; and d) using the phase of the acoustic signal to detect the presence of the target fluid.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Crozat, G.; Domergue, J.L.; Bogui, V.

Atmospheric aerosols were sampled on filters to the air near ground level over the Ivory Coast and the Gulf of Guinea. Several elements were measured of filters by neutron activation and gamma spectrometry. Correlation thats applied to these elements allow them to be classified in groups of common origin. Study of the sampling collected over the Ivory Coast, along a''North- South'' axis, showed an increase of the concentrations of the terrestrial elements, as one passes from the coast to the north of the country. However, no particular increase of the concentrations was observed, to ground level air, when passing frommore » one side of the intertropical front to the other. In the air above the land, concentrations of marine aerosols decrease from the coast forth, especially near it. Daily variations may be noticed for all the elements The experiments performed in marthe atmosphere, over the Guif of Guinea, show that a high number of the elements measured are of terrestrial origin. (UK)« less

Groundwater environmental tracer data collected from the Chicot, Evangeline, and Jasper aquifers in Montgomery County and adjacent counties, Texas, 2008

USGS Publications Warehouse

Oden, Timothy D.

2011-01-01

The Gulf Coast aquifer system is the primary water supply for Montgomery County in southeastern Texas, including part of the Houston metropolitan area and the cities of Magnolia, Conroe, and The Woodlands Township, Texas. The U.S. Geological Survey, in cooperation with the Lone Star Groundwater Conservation District, collected environmental tracer data in the Gulf Coast aquifer system, primarily in Montgomery County. Forty existing groundwater wells screened in the Gulf Coast aquifer system were selected for sampling in Montgomery County (38 wells), Waller County (1 well), and Walker County (1 well). Groundwater-quality samples, physicochemical properties, and water-level data were collected once from each of the 40 wells during March-September 2008. Groundwater-quality samples were analyzed for dissolved gases and the environmental tracers sulfur hexafluoride, chlorofluorocarbons, tritium, helium-4, and helium-3/tritium. Water samples were collected and processed onsite using methods designed to minimize changes to the water-sample chemistry or contamination from the atmosphere. Replicate samples for quality assurance and quality control were collected with each environmental sample. Well-construction information and environmental tracer data for March-September 2008 are presented.

Population Genetic Structure and Demographic History of Atrina pectinata Based on Mitochondrial DNA and Microsatellite Markers

PubMed Central

Xue, Dong-Xiu; Wang, Hai-Yan; Zhang, Tao; Liu, Jin-Xian

2014-01-01

The pen shell, Atrina pectinata, is one of the commercial bivalves in East Asia and thought to be recently affected by anthropogenic pressure (habitat destruction and/or fishing pressure). Information on its population genetic structure is crucial for the conservation of A. pectinata. Considering its long pelagic larval duration and iteroparity with high fecundity, the genetic structure for A. pectinata could be expected to be weak at a fine scale. However, the unusual oceanography in the coasts of China and Korea suggests potential for restricted dispersal of pelagic larvae and geographical differentiation. In addition, environmental changes associated with Pleistocene sea level fluctuations on the East China Sea continental shelf may also have strongly influenced historical population demography and genetic diversity of marine organisms. Here, partial sequences of the mitochondrial Cytochrome c oxidase subunit I (COI) gene and seven microsatellite loci were used to estimate population genetic structure and demographic history of seven samples from Northern China coast and one sample from North Korea coast. Despite high levels of genetic diversity within samples, there was no genetic differentiation among samples from Northern China coast and low but significant genetic differentiation between some of the Chinese samples and the North Korean sample. A late Pleistocene population expansion, probably after the Last Glacial Maximum, was also demonstrated for A. pectinata samples. No recent genetic bottleneck was detected in any of the eight samples. We concluded that both historical recolonization (through population range expansion and demographic expansion in the late Pleistocene) and current gene flow (through larval dispersal) were responsible for the weak level of genetic structure detected in A. pectinata. PMID:24789175

Detection of Classical swine fever virus infection by individual oral fluid of pigs following experimental inoculation.

PubMed

Petrini, Stefano; Pierini, Ilaria; Giammarioli, Monica; Feliziani, Francesco; De Mia, Gian Mario

2017-03-01

We evaluated the use of oral fluid as an alternative to serum samples for Classical swine fever virus (CSFV) detection. Individual oral fluid and serum samples were collected at different times post-infection from pigs that were experimentally inoculated with CSFV Alfort 187 strain. We found no evidence of CSFV neutralizing antibodies in swine oral fluid samples under our experimental conditions. In contrast, real-time reverse transcription-polymerase chain reaction could detect CSFV nucleic acid from the oral fluid as early as 8 d postinfection, which also coincided with the time of initial detection in blood samples. The probability of CSFV detection in oral fluid was identical or even higher than in the corresponding blood sample. Our results support the feasibility of using this sampling method for CSFV genome detection, which may represent an additional cost-effective tool for CSF control.

Determination of the Landau Lifshitz damping parameter of composite magnetic fluids

NASA Astrophysics Data System (ADS)

Fannin, P. C.; Malaescu, I.; Marin, C. N.

2007-01-01

Measurements of the frequency dependent, complex magnetic susceptibility, χ(ω)= χ‧( ω)- iχ″( ω), in the GHz range, are used to investigate the effect which the mixing of two different magnetic fluids has on the value of the damping parameter, α, of the Landau-Lifshitz equation. The magnetic fluid samples investigated in this study were three kerosene-based magnetic fluids, stabilised with oleic acid, denoted as MF1, MF2 and MF3. Sample MF1 was a magnetic fluid with Mn 0.6Fe 0.4Fe 2O 4 particles, sample MF2 was a magnetic fluid with Ni 0.4Zn 0.6Fe 2O 4 particles and sample MF3 was a composite magnetic fluid obtained by mixing a part of sample MF1 with a part of sample MF2, in proportion of 1:1. The experimental results revealed that the value of the damping parameter of the composite sample (sample MF3) is between the α values obtained for its constituents (samples MF1 and MF2). Based on the superposition principle, which states that the susceptibility of a magnetic fluid sample is a superposition of individual contributions of the magnetic particles, a theoretical model is proposed. The experimental results are shown to be in close agreement with the theoretical results. This result is potentially useful in the design of microwave-operating materials, in that it enables one to determine a particular value of damping parameter.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Duran, S.; Gueray, R. T.; Yalcin, C.

In this study, 137Cs specific activities were measured in surface soil samples collected from undisturbed areas over the eastern part of the Black Sea coast line of Turkey, between Trabzon and Hopa, in August 2004 and January 2005. A total number of 41 surface soil samples were counted using an HpGe spectrometer system. The results indicate that 137Cs levels show a large variation over the coast ranging between 10 Bq/kg and 1000 Bq/kg. The soil activities are generally higher in the eastern part of the coast. Exposure rates above the ground surface due to 137Cs activity in soil estimated tomore » vary between 0.1mR/s and 9 mR/s.« less

FLUID SELECTING APPARATUS

DOEpatents

Stinson, W.J.

1958-09-16

A valve designed to selectively sample fluids from a number of sources is described. The valve comprises a rotatable operating lever connected through a bellows seal to a rotatable assembly containing a needle valve, bearings, and a rotational lock. The needle valve is connected through a flexible tube to the sample fluid outlet. By rotating the lever the needle valve is placed over . one of several fluid sources and locked in position so that the fluid is traasferred through the flexible tubing and outlet to a remote sampling system. The fluids from the nonselected sources are exhausted to a waste line. This valve constitutes a simple, dependable means of selecting a sample from one of several scurces.

Probability of detecting Porcine reproductive and respiratory syndrome virus infection using pen-based swine oral fluid specimens as a function of within-pen prevalence.

PubMed

Olsen, Chris; Wang, Chong; Christopher-Hennings, Jane; Doolittle, Kent; Harmon, Karen M; Abate, Sarah; Kittawornrat, Apisit; Lizano, Sergio; Main, Rodger; Nelson, Eric A; Otterson, Tracy; Panyasing, Yaowalak; Rademacher, Chris; Rauh, Rolf; Shah, Rohan; Zimmerman, Jeffrey

2013-05-01

Pen-based oral fluid sampling has proven to be an efficient method for surveillance of infectious diseases in swine populations. To better interpret diagnostic results, the performance of oral fluid assays (antibody- and nucleic acid-based) must be established for pen-based oral fluid samples. Therefore, the objective of the current study was to determine the probability of detecting Porcine reproductive and respiratory syndrome virus (PRRSV) infection in pen-based oral fluid samples from pens of known PRRSV prevalence. In 1 commercial swine barn, 25 pens were assigned to 1 of 5 levels of PRRSV prevalence (0%, 4%, 12%, 20%, or 36%) by placing a fixed number (0, 1, 3, 5, or 9) of PRRSV-positive pigs (14 days post PRRSV modified live virus vaccination) in each pen. Prior to placement of the vaccinated pigs, 1 oral fluid sample was collected from each pen. Thereafter, 5 oral fluid samples were collected from each pen, for a total of 150 samples. To confirm individual pig PRRSV status, serum samples from the PRRSV-negative pigs (n = 535) and the PRRSV vaccinated pigs (n = 90) were tested for PRRSV antibodies and PRRSV RNA. The 150 pen-based oral fluid samples were assayed for PRRSV antibody and PRRSV RNA at 6 laboratories. Among the 100 samples from pens containing ≥1 positive pig (≥4% prevalence) and tested at the 6 laboratories, the mean positivity was 62% for PRRSV RNA and 61% for PRRSV antibody. These results support the use of pen-based oral fluid sampling for PRRSV surveillance in commercial pig populations.

Geochemistry of tectonically expelled fluids from the northern Coast ranges, Rumsey Hills, California, USA

USGS Publications Warehouse

Davisson, M.L.; Presser, T.S.; Criss, R.E.

1994-01-01

Tectonic compression has created abnormally high pressure on deep basinal fluids causing their expulsion from areally exposed Upper Cretaceous rock along the eastern margin of the California Coast ranges. The fluids emerge as near-neutral, perennial sodium chloride springs at high elevations with flow rates as high as 10 L per min. Higher spring discharges are more common around the exposure of a west-vergent fault propagation fold axis. Spring waters range from ~1000 to 27,000 mg/L TDS. The least saline water (??18O = -7.5???) closely represents local meteoric water that mixes with saline fluid (??18O = +5.3???) and forms a slope of ~3.5 on a ??D vs. ??18O plot. A Na (125 to 8000 mg/L) vs. Cl (150 to 17,000 mg/L) plot shows a linear dilution trend that extends close to, but below, the values for modern seawater. Calcium (75-3000 mg/L) is considerably enriched relative to seawater and forms a nonlinear trend with chloride. In detail, the "Na deficit," defined by the difference between the measured Na content and the Na concentration on a hypothetical seawater dilution line, is approximately balanced by the Ca excess, similarly defined by the seawater dilution line. This relationship strongly suggests that the fluid is diluted seawater that is being modified by active albitization of plagioclase at different depths. Simultaneous B and 18O enrichment of the fluids, accompanied by deuterium depletion, further suggest that the seawater modification is influenced by clay diagenesis. Bicarbonate and SiO2 concentrations show an inverse correlation with Cl, with most waters being saturated or slightly oversaturated with calcite and quartz at the discharge temperatures. Some freshwater springs with near-meteoric stable isotope values may represent mixing of young groundwater from perched aquifers, but in many cases, the freshwater springs emerge along the same structures and have the same perennial nature as the saline fluids, and expulsion of an older fresh groundwater component that is under abnormal fluid pressures cannot be ruled out. Basinal fluids elsewhere commonly show dilution trends with local meteoric water, and in the case of the Rumsey Hills, some of the dilute saline waters may indicate deep penetration of meteoric water (> 1 km) in the Pleistocene before the latest tectonic uplift. Geothermometry of the spring waters (maximum ~90??C) suggest an origin from as deep as 4.0 km. This depth is consistent with the depth of the core of a fault propagation anticline below the surface of the Rumsey Hills developed by active internal deformation of an east-tapering wedge beneath the southwestern Sacramento Valley. Active tectonic compression causes near-lithostatic fluid pressures in the shallow subsurface below the Rumsey Hills and volume strain within the core of the anticline that results in upward expulsion of the saline fluids from the indicated depths. ?? 1994.

Convectively driven PCR thermal-cycling

DOEpatents

Benett, William J.; Richards, James B.; Milanovich, Fred P.

2003-07-01

A polymerase chain reaction system provides an upper temperature zone and a lower temperature zone in a fluid sample. Channels set up convection cells in the fluid sample and move the fluid sample repeatedly through the upper and lower temperature zone creating thermal cycling.

Microfluidics apparatus and methods for use thereof

DOEpatents

Peeters, John P.; Wiggins, Thomas; Ghosh, Madhushree; Bottomley, Lawrence A.; Seminara, Salvatore; Hu, Zhiyu; Seeley, Timothy; Kossek, Sebastian

2005-08-09

A microfluidics device includes a plurality of interaction cells and fluid control means including i) means for providing to the interaction cells a preparation fluid, and ii) means for providing to the interaction cells a sample fluid, wherein each interaction cell receives a different sample fluid. A plurality of microcantilevers may be disposed in each of the interaction cells, wherein each of the plurality of microcantilevers configured to deflect in response to an interaction involving a component of the sample fluid.

Effects of non-aqueous fluids cuttings discharge from exploratory drilling activities on the deep-sea macrobenthic communities

NASA Astrophysics Data System (ADS)

Santos, M. F. L.; Lana, P. C.; Silva, J.; Fachel, J. G.; Pulgati, F. H.

2009-01-01

This paper assesses the effects of non-aqueous fluids (NAFs-type III) cuttings discharge from exploratory drilling activities on deep-sea macrobenthic communities in the Campos Basin, off the southeastern Brazilian coast, Rio de Janeiro State. One hundred and fifty nine sediment samples were taken with a 0.25 m 2 box corer at a depth of 902 m on three monitoring cruises: first cruise—before drilling (April 2001), second cruise—after drilling (July 2001), and third cruise—one year after drilling (July 2002). The results indicated no significant changes in values of density, number of families and functional groups related to drilling activities in the reference area (2500 m distance), and biological variations may be result from the natural variability of the fauna. Evidence indicates that drilling activities led to measurable effects on the community structure related to NAF cuttings discharge but were limited to a 500 m radius from the drilling well. Such effects were much more evident at isolated sites in the impact area (WBF and WBF+NAF areas) and are characterized as localized impacts. One year after drilling, a recolonization was observed, with the probable recovery of the macrobenthic community in most of the study area; only at part of the WBF+NAF area (stations 05, 24 and 36) was the community still undergoing recovery.

Shipboard Programs: A Coast-to-Coast Sampler.

ERIC Educational Resources Information Center

Landscroener, Barbara, Ed.

1982-01-01

Describes marine education programs in five states which provide participants with onboard ship experiences including sailing, sampling, and collecting in different marine environments. Includes public and higher education programs in Connecticut, Massachusetts, Florida, and California and the National Oceanic and Atmospheric Administration's Corp…

System and method for measuring permeability of materials

DOEpatents

Hallman, Jr., Russell Louis; Renner, Michael John

2013-07-09

Systems and methods are provided for measuring the permeance of a material. The permeability of the material may also be derived. Systems typically provide a liquid or high concentration fluid bath on one side of a material test sample, and a gas flow across the opposing side of the material test sample. The mass flow rate of permeated fluid as a fraction of the combined mass flow rate of gas and permeated fluid is used to calculate the permeance of the material. The material test sample may be a sheet, a tube, or a solid shape. Operational test conditions may be varied, including concentration of the fluid, temperature of the fluid, strain profile of the material test sample, and differential pressure across the material test sample.

Material permeance measurement system and method

DOEpatents

Hallman, Jr., Russell Louis; Renner, Michael John [Oak Ridge, TN

2012-05-08

A system for measuring the permeance of a material. The permeability of the material may also be derived. The system provides a liquid or high concentration fluid bath on one side of a material test sample, and a gas flow across the opposing side of the material test sample. The mass flow rate of permeated fluid as a fraction of the combined mass flow rate of gas and permeated fluid is used to calculate the permeance of the material. The material test sample may be a sheet, a tube, or a solid shape. Operational test conditions may be varied, including concentration of the fluid, temperature of the fluid, strain profile of the material test sample, and differential pressure across the material test sample.

Influenza A Virus Surveillance Based on Pre-Weaning Piglet Oral Fluid Samples.

PubMed

Panyasing, Y; Goodell, C; Kittawornrat, A; Wang, C; Levis, I; Desfresne, L; Rauh, R; Gauger, P C; Zhang, J; Lin, X; Azeem, S; Ghorbani-Nezami, S; Yoon, K-J; Zimmerman, J

2016-10-01

Influenza A virus (IAV) surveillance using pre-weaning oral fluid samples from litters of piglets was evaluated in four ˜12 500 sow and IAV-vaccinated, breeding herds. Oral fluid samples were collected from 600 litters and serum samples from their dams at weaning. Litter oral fluid samples were tested for IAV by virus isolation, quantitative reverse transcription-polymerase chain reaction (qRT-PCR), RT-PCR subtyping and sequencing. Commercial nucleoprotein (NP) enzyme-linked immunosorbent assay (ELISA) kits and NP isotype-specific assays (IgM, IgA and IgG) were used to characterize NP antibody in litter oral fluid and sow serum. All litter oral fluid specimens (n = 600) were negative by virus isolation. Twenty-five oral fluid samples (25/600 = 4.2%) were qRT-PCR positive based on screening (Laboratory 1) and confirmatory testing (Laboratory 2). No hemagglutinin (HA) and neuraminidase (NA) gene sequences were obtained, but matrix (M) gene sequences were obtained for all qRT-PCR-positive samples submitted for sequencing (n = 18). Genetic analysis revealed that all M genes sequences were identical (GenBank accession no. KF487544) and belonged to the triple reassortant influenza A virus M gene (TRIG M) previously identified in swine. The proportion of IgM- and IgA-positive samples was significantly higher in sow serum and litter oral fluid samples, respectively (P < 0.01). Consistent with the extensive use of IAV vaccine, no difference was detected in the proportion of IgG- and blocking ELISA-positive sow serum and litter oral fluids. This study supported the use of oral fluid sampling as a means of conducting IAV surveillance in pig populations and demonstrated the inapparent circulation of IAV in piglets. Future work on IAV oral fluid diagnostics should focus on improved procedures for virus isolation, subtyping and sequencing of HA and NA genes. The role of antibody in IAV surveillance remains to be elucidated, but longitudinal assessment of specific antibody has the potential to provide information regarding patterns of infection, vaccination status and herd immunity. © 2014 Blackwell Verlag GmbH.

Fluid pressure responses for a Devil's Slide-like system: problem formulation and simulation

USGS Publications Warehouse

Thomas, Matthew A.; Loague, Keith; Voss, Clifford I.

2015-01-01

This study employs a hydrogeologic simulation approach to investigate subsurface fluid pressures for a landslide-prone section of the central California, USA, coast known as Devil's Slide. Understanding the relative changes in subsurface fluid pressures is important for systems, such as Devil's Slide, where slope creep can be interrupted by episodic slip events. Surface mapping, exploratory core, tunnel excavation records, and dip meter data were leveraged to conceptualize the parameter space for three-dimensional (3D) Devil's Slide-like simulations. Field observations (i.e. seepage meter, water retention, and infiltration experiments; well records; and piezometric data) and groundwater flow simulation (i.e. one-dimensional vertical, transient, and variably saturated) were used to design the boundary conditions for 3D Devil's Slide-like problems. Twenty-four simulations of steady-state saturated subsurface flow were conducted in a concept-development mode. Recharge, heterogeneity, and anisotropy are shown to increase fluid pressures for failure-prone locations by up to 18.1, 4.5, and 1.8% respectively. Previous estimates of slope stability, driven by simple water balances, are significantly improved upon with the fluid pressures reported here. The results, for a Devil's Slide-like system, provide a foundation for future investigations

Analysis of cannabis in oral fluid specimens by GC-MS with automatic SPE.

PubMed

Choi, Hyeyoung; Baeck, Seungkyung; Kim, Eunmi; Lee, Sooyeun; Jang, Moonhee; Lee, Juseon; Choi, Hwakyung; Chung, Heesun

2009-12-01

Methamphetamine (MA) is the most commonly abused drug in Korea, followed by cannabis. Traditionally, MA analysis is carried out on both urine and hair samples and cannabis analysis in urine samples only. Despite the fact that oral fluid has become increasingly popular as an alternative specimen in the field of driving under the influence of drugs (DUID) and work place drug testing, its application has not been expanded to drug analysis in Korea. Oral fluid is easy to collect and handle and can provide an indication of recent drug abuse. In this study, we present an analytical method using GC-MS to determine tetrahydrocannabinol (THC) and its main metabolite 11-nor-delta9-tetrahydrocannabinol-9-carboxylic acid (THC-COOH) in oral fluid. The validated method was applied to oral fluid samples collected from drug abuse suspects and the results were compared with those in urine. The stability of THC and THC-COOH in oral fluid stored in different containers was also investigated. Oral fluid specimens from 12 drug abuse suspects, submitted by the police, were collected by direct expectoration. The samples were screened with microplate ELISA. For confirmation they were extracted using automated SPE with mixed-mode cation exchange cartridge, derivatized and analyzed by GC-MS using selective ion monitoring (SIM). The concentrations ofTHC and THC-COOH in oral fluid showed a large variation and the results from oral fluid and urine samples from cannabis abusers did not show any correlation. Thus, detailed information about time interval between drug use and sample collection is needed to interpret the oral fluid results properly. In addition, further investigation about the detection time window ofTHC and THC-COOH in oral fluid is required to substitute oral fluid for urine in drug testing.

Containers and systems for the measurement of radioactive gases and related methods

DOEpatents

Mann, Nicholas R; Watrous, Matthew G; Oertel, Christopher P; McGrath, Christopher A

2017-06-20

Containers for a fluid sample containing a radionuclide for measurement of radiation from the radionuclide include an outer shell having one or more ports between an interior and an exterior of the outer shell, and an inner shell secured to the outer shell. The inner shell includes a detector receptacle sized for at least partial insertion into the outer shell. The inner shell and outer shell together at least partially define a fluid sample space. The outer shell and inner shell are configured for maintaining an operating pressure within the fluid sample space of at least about 1000 psi. Systems for measuring radioactivity in a fluid include such a container and a radiation detector received at least partially within the detector receptacle. Methods of measuring radioactivity in a fluid sample include maintaining a pressure of a fluid sample within a Marinelli-type container at least at about 1000 psi.

Surface sampling concentration and reaction probe with controller to adjust sampling position

DOEpatents

Van Berkel, Gary J.; ElNaggar, Mariam S.

2016-07-19

A method of analyzing a chemical composition of a specimen is described. The method can include providing a probe comprising an outer capillary tube and an inner capillary tube disposed co-axially within the outer capillary tube, where the inner and outer capillary tubes define a solvent capillary and a sampling capillary in fluid communication with one another at a distal end of the probe; contacting a target site on a surface of a specimen with a solvent in fluid communication with the probe; maintaining a plug volume proximate a solvent-specimen interface, wherein the plug volume is in fluid communication with the probe; draining plug sampling fluid from the plug volume through the sampling capillary; and analyzing a chemical composition of the plug sampling fluid with an analytical instrument. A system for performing the method is also described.

Assessment of trace metal pollution in sediments and intertidal fauna at the coast of Cameroon.

PubMed

Ngeve, Magdalene N; Leermakers, Martine; Elskens, Marc; Kochzius, Marc

2015-06-01

Coastal systems act as a boundary between land and sea. Therefore, assessing pollutant concentrations at the coast will provide information on the impact that land-based anthropogenic activities have on marine ecosystems. Sediment and fauna samples from 13 stations along the whole coast of Cameroon were analyzed to assess the level of trace metal pollution in sediments and intertidal fauna. Sediments showed enrichment of As, Cd, Co, Cr, Cu, Fe, Mn, Ni, Pb, V, and Zn. However, pollution of greater concern was observed for Cd, Cr, Cu, Ni, and Zn at the northern stations. Some sites recorded trace metal levels higher than recommended in sediment quality guidelines. Species diversity was low, and high bioaccumulation of trace metals was observed in biological samples. Some edible gastropod species accumulated trace metals above the safety limits of the World Health Organization, European Medicine Agency, and the US Environment Protection Agency. Although industrial pollution is significant along Cameroon's coast, natural pollution from the volcano Mount Cameroon is also of concern.

Pressure solution and microfracturing in primary oil migration, Upper Cretaceous Austin Chalk, Texas Gulf Coast

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chanchani, J.; Berg, R.R.; Lee, C.I.

1996-09-01

The Upper Cretaceous Austin Chalk is a well known source rock and fractured reservoir in the Gulf Coast. Production is mainly from tectonic fractures, and the mechanism by which oil migrated from the matrix into the fractures is poorly understood. Microfracturing due to oil generation offers a possible explanation for the mechanism of the primary migration of oil in the Austin Chalk. Petrographic study shows that the major components of the primary migration system are the solution seams and the associated microfractures. Pressure solution is manifest as centimeter to millimeter-scale solution seams and smaller microseams. The solution seams are compositesmore » formed by the superposition of the smaller microseams. A significant amount of organic matter was concentrated in the seams along with other insoluble residue. Swarms of horizontal microfractures, many of them filled with calcite and other residue, are associated with the seams. Vertical, tectonic fractures that constitute the reservoir porosity, intersect the solution seams. Pressure solution concentrated organic matter within the solution seams and oil was generated there. It is postulated that the accompanying increase in fluid volume raised the pore pressures and fractured the rock. The newly created microfractures were avenues for migration of fluids from the seams, perhaps by microfracture propagation.« less

U.S. Geological survey program on toxic waste--ground-water contamination; proceedings of the Second technical meeting, Cape Cod, Massachusetts, October 21-25, 1985

USGS Publications Warehouse

Ragone, S.E.

1988-01-01

This study characterizes the clay minerals in sediments associated with a plume of creosote-contaminated groundwater. The plume of contaminated groundwater near Pensacola, FL, is in shallow, permeable, Miocene to Holocene quartz sand and flows southward toward Pensacola Bay. Clay-size fractions were separated from 41 cores, chiefly split-spoon samples at 13 drill sites. The most striking feature of the chemical analyses of the clay fractions from uncontaminated site 2 and contaminated sites 4,5,6, and 7 is the variability of iron oxide (species in some samples as Fe2O3); total iron oxide abundance is lowest (2.5%) in uncontaminated sample 2-40, but is > 4.5% (4.5 to 8.5%) in the remaining assemblages. One feature suggesting interaction between the indigenous clays and the waste plume is the presence of nontronite-rich smectite. Nontronite commonly has been identified as the product of hydrothermal alteration and deep-sea weathering of submarine basalts; it is not a common constituent of Cenozoic Gulf Coast sediments. At the Pensacola site, relatively abundant nontronitic smectite is confined to contaminated sands or associated muds; it is least abundant or absent in sands and muds peripheral to the waste plume. The geochemistry of the waste plume, its substantial dissolved, (chiefly ferrous iron), mildly acidic (pH 5-6), and low redox composition, provides an environment similar to that previously determined for the low-temperature synthesis of nontronite. Data from clay-size fractions confirm conclusions that neoformed pyrite in some grain coatings occurs in an assemblage with excess iron over that required in the pyrite. Continuing studies to evaluate these tentative conclusions include: (1) chemical analysis of clay fractions from remaining sites to further examine the apparent relation between iron content and abundance of nontronitic smectite; (2) clay separation and analysis, and pore fluid extraction (squeezing or ultracentrifugation) and analysis from a continuous core through the mud lens to determine pore fluid composition (presence or absence of waste fluid), and character of associated clay minerals; and (3) clay separation and analysis in both permeable sands and the intervening mud lens that are clearly outside the limits of the waste plume to further document the effects of the plume. (See also W90-00022) (Lantz-PTT)

Accessing SAFOD data products: Downhole measurements, physical samples and long-term monitoring

NASA Astrophysics Data System (ADS)

Weiland, C.; Zoback, M.; Hickman, S. H.; Ellsworth, W. L.

2005-12-01

Many different types of data were collected during SAFOD Phases 1 and 2 (2004-2005) as part of the National Science Foundation's EarthScope program as well as from the SAFOD Pilot Hole, drilled in 2002 and funded by the International Continental Drilling Program (ICDP). Both SAFOD and the SAFOD Pilot Hole are being conducted as a close collaboration between NSF, the U.S. Geological Survey and the ICDP. SAFOD data products include cuttings, core and fluid samples; borehole geophysical measurements; and strain, tilt, and seismic recordings from the multilevel SAFOD borehole monitoring instruments. As with all elements of EarthScope, these data (and samples) are openly available to members of the scientific and educational communities. This paper presents the acquisition, storage and distribution plan for SAFOD data products. Washed and unwashed drill cuttings and mud samples were collected during Phases 1 and 2, along with three spot cores at depths of 1.5, 2.5, and 3.1 km. A total of 52 side-wall cores were also collected in the open-hole interval between 2.5 and 3.1 km depth. The primary coring effort will occur during Phase 3 (2007), when we will continuously core up to four, 250-m-long multilaterals directly within and adjacent to the San Andreas Fault Zone. Drill cuttings, core, and fluid samples from all three Phases of SAFOD drilling are being curated under carefully controlled conditions at the Integrated Ocean Drilling Program (IODP) Gulf Coast Repository in College Station, Texas. Photos of all physical samples and a downloadable sample request form are available on the ICDP website (http://www.icdp-online.de/sites/sanandreas/index/index.html). A suite of downhole geophysical measurements was conducted during the first two Phases of SAFOD drilling, as well as during drilling of the SAFOD Pilot Hole. These data include density, resistivity, porosity, seismic and borehole image logs and are also available via the ICDP website. The SAFOD monitoring program includes fiber-optic strain, tilt, seismic and fluid-pressure recording instruments. Seismic data from the Pilot Hole array are now available in SEED format from the Northern California Earthquake Data Center (http://quake.geo.berkeley.edu/safod/). The strain and tilt instruments are still undergoing testing and quality assurance, and these data will be available through the same web site as soon as possible. Lastly, two terabytes of unprocessed (SEG-2 format) data from a two-week deployment of an 80-level seismic array during April/May 2005 by Paulsson Geophysical Services, Inc. are now available via the IRIS data center (http://www.iris.edu/data/data.htm). Drilling parameters include real-time descriptions of drill cuttings mineralogy, drilling mud properties, and mechanical data related to the drilling process and are available via the ICDP web site. Current status reports on SAFOD drilling, borehole measurements, sampling, and monitoring instrumentation will continue to be available from the EarthScope web site (http://www.earthscope.org).

Experimental Evidence of Volcanic Earthquakes Induced by Different Fluid Types

NASA Astrophysics Data System (ADS)

Clarke, J. A.; Adam, L.; Sarout, J.; van Wijk, K.; Dautriat, J. D.; Kennedy, B.

2017-12-01

Low Frequency volcanic seismicity has long been associated with resonance in fluid-filled cracks or conduits driven by pressure perturbations at depth. In volcano monitoring, fluid movement, fracturing and the conduit geometry are interpreted based on field observations, laboratory experiments, and numerical models. Fluids in a volcanic environment include gasses, brine and magmas with different viscosities. Magma viscosity is a key influence on eruptive behaviour. For example, increasing magma viscosity is known to favour explosive eruptions. How different fluids affect volcano seismicity is not well understood. Here, we explore the effects of fluid type on volcano seismic signals. Frequency content in the signal, frequency of the events, source mechanism and quality factor are studied. We simulate volcano tectonic (fracturing) and volcano seismic (fluid movement) signatures in a controlled laboratory environment using a range of rock samples, fluid types and pressure conditions. The viscosity of the fluids spans six orders of magnitude, representing realistic volcanic fluids. Microseismicity is generated by venting pressurised fluids through pre-generated fracture networks in cylindrical rock core samples and detected by an array of 18 ultrasonic transducers. We fracture samples of two lithologies: 1) low porosity impermeable granite samples and 2) a permeable volcanic ash tuff sample. Permeability and porosity in the granites are due to a fracture network, while in the tuff a high porosity matrix ( 40 %) and a fracture network interact. The fluids used are nitrogen gas, water, and mixtures of water and glycerol. We generate and detect a myriad of seismic event types, some of which resemble well-known families of volcano-tectonic, low-frequency, hybrid and tremor-type seismicity. Samples with fluids of lower density and viscosity generate a higher number of seismic events. We will present an integrated analysis of the event types, frequency content, source locations and mechanisms. In addition, we explore the importance of seismic wave attenuation by studying the relationship between wave path and event frequency content.

Population genetics features for persistent, but transient, Botryllus schlosseri (Urochordata) congregations in a central Californian marina.

PubMed

Karahan, Arzu; Douek, Jacob; Paz, Guy; Rinkevich, Baruch

2016-08-01

The colonial tunicate Botryllus schlosseri is a globally distributed, invasive ascidian that has colonized the Californian coasts of the USA during the mid-late 1940s and has, since the late 1980s, spread north to Washington. This study analyzes the population genetic characteristics of transient populations residing at the Elkhorn Yacht-Club (EYC), in central California (seven sessions, 1996-2008), which suffered periodic catastrophes caused by episodic fresh-water floods and a single sampling session (in the year 2001) of five West-Coast populations using the mtDNA COI gene and five microsatellite markers. EYC microsatellite results were further compared with the closely situated but persistent population of the Santa Cruz Harbor (SCH) to understand the impact on EYC population regeneration processes after the 2005-flood catastrophe. All microsatellites were highly polymorphic, revealing a large number of unique alleles at different sampling dates. Whereas pairwise θ did not reveal significant differences between the EYC time-series samplings, the overall θ was significant, as it was between all the 2001 West Coast populations. The most likely cluster number was 3 for the EYC samples whereas two K values were obtained (2 and 5) for the 2001 samples. Tajima's D and Fu's/Fs tests did not reject the null hypothesis for COI neutral evolution, except for in the EYC-2000, 2007 and two 2001 samplings. The wide geographical range of the analyses has indicated that following the EYC 2005-flood catastrophe, newcomers could have originated from neighboring populations, from deep-water colonies that may have escaped the 2005 low salinity event, or less expectedly, from far away West-Coast populations, while revealing that the SCH population is the most probable source for the EYC population. Copyright © 2016 Elsevier Inc. All rights reserved.

Porcine reproductive and respiratory syndrome virus (PRRSV) surveillance using pre-weaning oral fluid samples detects circulation of wild-type PRRSV.

PubMed

Kittawornrat, Apisit; Panyasing, Yaowalak; Goodell, Christa; Wang, Chong; Gauger, Phillip; Harmon, Karen; Rauh, Rolf; Desfresne, Luc; Levis, Ian; Zimmerman, Jeffrey

2014-01-31

Oral fluid samples collected from litters of piglets (n=600) one day prior to weaning were evaluated as a method to surveil for porcine reproductive and respiratory syndrome virus (PRRSV) infections in four sow herds of approximately 12,500 sow each. Serum samples from the litters' dam (n=600) were included for comparison. All four herds were endemically infected with PRRSV and all sows had been vaccinated ≥ 2 times with PRRSV modified-live virus vaccines. After all specimens had been collected, samples were randomized and assayed by PRRSV real-time reverse transcription polymerase chain reaction (RT-qPCR) and four PRRSV antibody ELISA assays (IgM, IgA, IgG, and Commercial Kit). All sow serum samples were negative by PRRSV RT-qPCR, but 9 of 600 oral fluid samples tested positive at two laboratories. Open reading frame 5 (ORF5) sequencing of 2 of the 9 positive oral fluid samples identified wild-type viruses as the source of the infection. A comparison of antibody responses in RT-qPCR positive vs. negative oral fluid samples showed significantly higher IgG S/P ratios in RT-qPCR-positive oral fluid samples (mean S/P 3.46 vs. 2.36; p=0.02). Likewise, sow serum samples from RT-qPCR-positive litter oral fluid samples showed significantly higher serum IgG (mean S/P 1.73 vs. 0.98; p<0.001) and Commercial Kit (mean S/P 1.97 vs. 0.98; p<0.001) S/P ratios. Overall, the study showed that pre-weaning litter oral fluid samples could provide an efficient and sensitive approach to surveil for PRRSV in infected, vaccinated, or presumed-negative pig breeding herds. Copyright © 2014 Elsevier B.V. All rights reserved.

Measurement of Clozapine, Norclozapine, and Amisulpride in Plasma and in Oral Fluid Obtained Using 2 Different Sampling Systems.

PubMed

Fisher, Danielle S; Beyer, Chad; van Schalkwyk, Gerrit; Seedat, Soraya; Flanagan, Robert J

2017-04-01

There is a poor correlation between total concentrations of proton-accepting compounds (most basic drugs) in unstimulated oral fluid and in plasma. The aim of this study was to compare clozapine, norclozapine, and amisulpride concentrations in plasma and in oral fluid collected using commercially available collection devices [Thermo Fisher Scientific Oral-Eze and Greiner Bio-One (GBO)]. Oral-Eze and GBO samples and plasma were collected in that order from patients prescribed clozapine. Analyte concentrations were measured by liquid chromatography-tandem mass spectrometry. There were 112 participants [96 men, aged (median, range) 47 (21-65) years and 16 women, aged 44 (21-65) years]: 74 participants provided 2 sets of samples and 7 provided 3 sets (overall 2 GBO samples not collected). Twenty-three patients were co-prescribed amisulpride, of whom 17 provided 2 sets of samples and 1 provided 3 sets. The median (range) oral fluid within the GBO samples was 52 (13%-86%). Nonadherence to clozapine was identified in all 3 samples in one instance. After correction for oral fluid content, analyte concentrations in the GBO and Oral-Eze samples were poorly correlated with plasma clozapine and norclozapine (R = 0.57-0.63) and plasma amisulpride (R = 0.65-0.72). Analyte concentrations in the 2 sets of oral fluid samples were likewise poorly correlated (R = 0.68-0.84). Mean (SD) plasma clozapine and norclozapine were 0.60 (0.46) and 0.25 (0.21) mg/L, respectively. Mean clozapine and norclozapine concentrations in the 2 sets of oral fluid samples were similar to those in plasma (0.9-1.8 times higher), that is, approximately 2- to 3-fold higher than those in unstimulated oral fluid. The mean (±SD) amisulpride concentrations (microgram per liter) in plasma (446 ± 297) and in the Oral-Eze samples (501 ± 461) were comparable and much higher than those in the GBO samples (233 ± 318). Oral fluid collected using either the GBO system or the Oral-Eze system cannot be used for quantitative clozapine and/or amisulpride therapeutic drug monitoring.

Oral fluid samples used for PRRSV acclimatization program and sow performance monitoring in endemic PRRS-positive farms.

PubMed

Woonwong, Yonlayong; Kedkovid, Roongtham; Arunorat, Jirapat; Sirisereewan, Chaitawat; Nedumpun, Teerawut; Poonsuk, Korakrit; Panyasing, Yaowalak; Poolperm, Pariwat; Boonsoongnern, Alongkot; Thanawongnuwech, Roongroje

2018-02-01

An effective gilt acclimatization program is one of the most important management strategies for controlling porcine reproductive and respiratory syndrome virus (PRRSV) infection. Recently, oral fluid samples have been used as alternative diagnostic samples for various swine diseases. This study utilized oral fluids for PRRSV monitoring during the gilt acclimatization period in PRRSV endemic farms. The study was performed in two selected commercial breeding herds (farm A and farm B). PRRSV RNA and PRRSV-specific antibodies were monitored using oral fluid and serum samples. Sow performance parameters related to PRRSV infection were recorded and assessed. After PRRSV exposure during acclimatization, viral RNA was demonstrated in oral fluids from 1 to 10 weeks post-exposure (WPE). PRRSV RNA was detected in serum at 1 and 4 WPE in farm A and at 1, 4, 8, and 12 WPE in farm B. Prolonged viremia of gilts from farm B was possibly due to re-infection (within the herd) and later, reproductive problems were found in the breeding herd. The correlation of PRRSV RNA concentration in oral fluids and serum was evident. The S/P ratio values of PRRSV antibodies in oral fluid samples were higher and had similar patterns of antibody responses to the serum samples. The results suggest that the use of oral fluid samples for PRRSV monitoring during gilt acclimatization in endemic farms is effective, convenient, practical, and economical and would be most beneficial when used with other parameters.

Magnetic particle translation as a surrogate measure for synovial fluid mechanics.

PubMed

Shah, Yash Y; Maldonado-Camargo, Lorena; Patel, Neal S; Biedrzycki, Adam H; Yarmola, Elena G; Dobson, Jon; Rinaldi, Carlos; Allen, Kyle D

2017-07-26

The mechanics of synovial fluid vary with disease progression, but are difficult to quantify quickly in a clinical setting due to small sample volumes. In this study, a novel technique to measure synovial fluid mechanics using magnetic nanoparticles is introduced. Briefly, microspheres embedded with superparamagnetic iron oxide nanoparticles, termed magnetic particles, are distributed through a 100μL synovial fluid sample. Then, a permanent magnet inside a protective sheath is inserted into the synovial fluid sample. Magnetic particles translate toward the permanent magnet and the percentage of magnetic particles collected by the magnet in a given time can be related to synovial fluid viscosity. To validate this relationship, magnetic particle translation was demonstrated in three phases. First, magnetic particle translation was assessed in glycerol solutions with known viscosities, demonstrating that as fluid viscosity increased, magnetic particle translation decreased. Next, the relationship between magnetic particle translation and synovial fluid viscosity was assessed using bovine synovial fluid that was progressively degenerated via ultrasonication. Here, particle collection in a given amount of time increased as fluid degenerated, demonstrating that the relationship between particle collection and fluid mechanics holds in non-Newtonian synovial fluid. Finally, magnetic particle translation was used to assess differences between healthy and OA affected joints in equine synovial fluid. Here, particle collection in a given time was higher in OA joints relative to healthy horses (p<0.001). Combined, these data demonstrate potential viability of magnetic particle translation in a clinical setting to evaluate synovial fluid mechanics in limited volumes of synovial fluid sample. Copyright © 2017 Elsevier Ltd. All rights reserved.

Density of total and pathogenic (tdh+) Vibrio parahaemolyticus in Atlantic and Gulf coast molluscan shellfish at harvest.

PubMed

Cook, David W; Bowers, John C; DePaola, Angelo

2002-12-01

The densities of total and pathogenic Vibrio parahaemolyticus in 671 samples of molluscan shellfish harvested in 1999 and 2000 from 14 sites in seven Gulf and Atlantic coast states were determined at 2-week intervals over a period of 12 to 16 months in each state. Changes in V. parahaemolyticus densities in shellfish between harvest and sample analysis were minimized with time and temperature controls. Densities were measured by direct plating techniques, and gene probes were used for identification. Total and pathogenic V. parahaemolyticus organisms were identified with probes for the thermolabile direct hemolysin (tlh) gene and the thermostable direct hemolysin (tdh) gene, respectively. An enrichment procedure involving 25 g of shellfish was also used for the recovery of pathogenic V. parahaemolyticus. The densities of V. parahaemolyticus in shellfish from all harvest sites were positively correlated with water temperature. Shellfish from the Gulf Coast typically had higher densities of V. parahaemolyticus than did shellfish harvested from the North Atlantic or mid-Atlantic coast. Vibrio parahaemolyticus counts exceeded 1,000 CFU/g for only 5% of all samples. Pathogenic (tdh+) V. parahaemolyticus was detected in approximately 6% of all samples by both procedures, and 61.5% of populations in the positive samples from the direct plating procedure were at the lower limit of detection (10 CFU/g). The frequency of detection of pathogenic V. parahaemolyticus was significantly related to water temperature and to the density of total V. parahaemolyticus. The failure to detect pathogenic V. parahaemolyticus in shellfish more frequently was attributed to the low numbers and uneven distribution of the organism.

Seaweeds from the Portuguese coast: A potential food resource?

NASA Astrophysics Data System (ADS)

Soares, C.; Machado, S.; Vieira, E. F.; Morais, S.; Teles, M. T.; Correia, M.; Carvalho, A.; Domingues, V. F.; Ramalhosa, M. J.; Delerue-Matos, C.; Antunes, F.

2017-09-01

The Portuguese coast presents a large amount of potentially edible seaweeds that are underexploited. The identification of different macroalgae species and their availability in the northern and central coast of the continental territory was assessed. The nutritional value of seaweeds is discussed based on a literature review (when available) focused on data for species collected in Portugal with the aim to define the most important nutritional parameters that should be characterized in the samples. Possible health concerns related with the presence of contaminants are also considered.

Surface sampling concentration and reaction probe

DOEpatents

Van Berkel, Gary J; Elnaggar, Mariam S

2013-07-16

A method of analyzing a chemical composition of a specimen is described. The method can include providing a probe comprising an outer capillary tube and an inner capillary tube disposed co-axially within the outer capillary tube, where the inner and outer capillary tubes define a solvent capillary and a sampling capillary in fluid communication with one another at a distal end of the probe; contacting a target site on a surface of a specimen with a solvent in fluid communication with the probe; maintaining a plug volume proximate a solvent-specimen interface, wherein the plug volume is in fluid communication with the probe; draining plug sampling fluid from the plug volume through the sampling capillary; and analyzing a chemical composition of the plug sampling fluid with an analytical instrument. A system for performing the method is also described.

Occurrence and spatial distribution of chemical contaminants in edible fish species collected from UK and proximate marine waters.

PubMed

Fernandes, A R; Mortimer, D; Holmes, M; Rose, M; Zhihua, L; Huang, X; Smith, F; Panton, S; Marshall, L

2018-05-01

The occurrence of a range of regulated and emerging organic environmental contaminants was investigated in 182 samples of edible marine fish sampled mainly from UK marine regions, but extending northerly to the coast of Norway and south to the Algarve. These species (sprats, mackerel, turbot, halibut, herring, grey mullet, sea bass, grey mullet, sardines, etc.) are among those considered to be at the highest risk of contamination with regulated contaminants such as polychlorinated dibenzo-p-dioxins and dibenzofurans (PCDD/Fs, dioxins), and polychlorinated biphenyls (PCBs), but the occurrence of polybrominated diphenylethers (PBDEs) and polybrominated biphenyls (PBBs) was also investigated. Sub-sets of samples (50-75) were also analysed for emerging contaminants: polychlorinated naphthalenes (PCNs), polybrominated and mixed halogenated dibenzo-p-dioxins, dibenzofurans and biphenyls (PBDD/Fs, PXDD/Fs and PXBs) and perfluoroalkyl substances (PFAS). Contaminant occurrence varied with species and location, but all measured contaminants were detected, with sprats, sea bass, sardines, mackerel, and herring showing higher tissue concentrations. The concentrations of the different contaminants in the various samples were mapped utilising the GPS coordinate data of the capture locations to visualise spatial distribution levels. In terms of catch location, fish sampled from the coasts of southern Britain, north-western France and the Irish Sea appeared to contain proportionately higher levels of some contaminants - e.g. samples from the Irish Sea tended to show higher PCN concentrations, whereas higher levels of PCBs were observed in some fish sampled off the coasts of northern France. Similarly, samples of mullet from the southeast coast of UK showed much higher concentrations of BDE-99 than the other regions. In terms of occurrence trends, PCDD/F and PCB concentrations show a modest decline over the last decade but where limited background data is available for emerging contaminants, there is no evidence of downward trends. Copyright © 2018 Elsevier Ltd. All rights reserved.

Coastal Atmosphere and Sea Time Series (CoASTS)

NASA Technical Reports Server (NTRS)

Hooker, Stanford B. (Editor); Firestone, Elaine R. (Editor); Zibordi, Giuseppe; Berthon, Jean-Francoise; Doyle, John P.; Grossi, Stefania; vanderLinde, Dirk; Targa, Cristina; Alberotanza, Luigi; McClain, Charles R. (Technical Monitor)

2002-01-01

The Coastal Atmosphere and Sea Time Series (CoASTS) Project aimed at supporting ocean color research and applications, from 1995 up to the time of publication of this document, has ensured the collection of a comprehensive atmospheric and marine data set from an oceanographic tower located in the northern Adriatic Sea. The instruments and the measurement methodologies used to gather quantities relevant for bio-optical modeling and for the calibration and validation of ocean color sensors, are described. Particular emphasis is placed on four items: (1) the evaluation of perturbation effects in radiometric data (i.e., tower-shading, instrument self-shading, and bottom effects); (2) the intercomparison of seawater absorption coefficients from in situ measurements and from laboratory spectrometric analysis on discrete samples; (3) the intercomparison of two filter techniques for in vivo measurement of particulate absorption coefficients; and (4) the analysis of repeatability and reproducibility of the most relevant laboratory measurements carried out on seawater samples (i.e., particulate and yellow substance absorption coefficients, and pigment and total suspended matter concentrations). Sample data are also presented and discussed to illustrate the typical features characterizing the CoASTS measurement site in view of supporting the suitability of the CoASTS data set for bio-optical modeling and ocean color calibration and validation.

The search for and analysis of direct samples of early Solar System aqueous fluids.

PubMed

Zolensky, Michael E; Bodnar, Robert J; Yurimoto, Hisayoshi; Itoh, Shoichi; Fries, Marc; Steele, Andrew; Chan, Queenie H-S; Tsuchiyama, Akira; Kebukawa, Yoko; Ito, Motoo

2017-05-28

We describe the current state of the search for direct, surviving samples of early, inner Solar System fluids-fluid inclusions in meteorites. Meteoritic aqueous fluid inclusions are not rare, but they are very tiny and their characterization is at the state of the art for most analytical techniques. Meteoritic fluid inclusions offer us a unique opportunity to study early Solar System brines in the laboratory. Inclusion-by-inclusion analyses of the trapped fluids in carefully selected samples will, in the immediate future, provide us detailed information on the evolution of fluids as they interacted with anhydrous solid materials. Thus, real data can replace calculated fluid compositions in thermochemical calculations of the evolution of water and aqueous reactions in comets, asteroids, moons and the terrestrial planets.This article is part of the themed issue 'The origin, history and role of water in the evolution of the inner Solar System'. © 2017 The Author(s).

Giardia and Cryptosporidium in cetaceans on the European Atlantic coast.

PubMed

Reboredo-Fernández, Aurora; Ares-Mazás, Elvira; Martínez-Cedeira, José A; Romero-Suances, Rafael; Cacciò, Simone M; Gómez-Couso, Hipólito

2015-02-01

The occurrence of Giardia and Cryptosporidium was investigated in cetacean specimens stranded on the northwestern coast of Spain (European Atlantic coast) by analysis of 65 samples of large intestine from eight species. The parasites were identified by direct immunofluorescence antibody test (IFAT) and by PCR amplification of the β-giardin gene, the ITS1-5.8S-ITS2 region and the SSU-rDNA gene of Giardia and the SSU-rDNA gene of Cryptosporidium. Giardia and Cryptosporidium were detected in 7 (10.8 %) and 9 samples (13.8 %), respectively. In two samples, co-infection with both parasites was observed. Giardia duodenalis assemblages A, C, D and F, and Cryptosporidium parvum were identified. This is the first report of G. duodenalis in Balaenoptera acutorostrata, Kogia breviceps and Stenella coeruleoalba and also the first report of Cryptosporidium sp. in B. acutorostrata and of C. parvum in S. coeruleoalba and Tursiops truncatus. These results extend the known host range of these waterborne enteroparasites.

Concentrations of Heavy Metals in Sardinella gibbosa (Bleeker, 1849) from the Coast of Balochistan, Pakistan.

PubMed

Ahmed, Quratulan; Benzer, Semra; Elahi, Naeema; Ali, Qadeer Mohammad

2015-08-01

The concentrations of cadmium, iron, lead, manganese, nickel, and zinc in muscle tissue samples taken from Goldstripe sardinella (Sardinella gibbosa Bleeker, 1849) caught off the coast of Balochistan, Pakistan, in 2009 were determined. The samples were analyzed using a Perkin Elmer AAnalyst 700 flame atomic absorption spectrophotometer. The mean Cd, Fe, Mn, Ni, Pb, and Zn concentrations in the muscle samples were 0.65±0.05 µg g(-1), 23.39±1.97 µg g(-1), 4.35±0.22 µg g(-1), 0.61±0.07 µg g(-1), 0.39±0.04 µg g(-1), and 6.59±0.33 µg g(-1), respectively. The Cd, Fe, Pb, and Zn concentrations did not exceed the regulatory limits, but the Mn concentrations were high enough to potentially pose health risks to humans consuming S. gibbosa. Therefore, the Mn concentrations in S. gibbosa from the Balochistan coast should be monitored regularly.

Gulf of Mexico and Atlantic coast sea level change

NASA Astrophysics Data System (ADS)

Douglas, Bruce C.

Twentieth-century relative sea level rise shows considerable variability along the U.S. East and Gulf coasts. Local rates of rise lie in the range of about 1.5 to more than 4 mm per year for records from Key West, Florida, to New York City. Rates of sea level rise in the Gulf of Mexico can be much higher. In Texas and Louisiana, long-term water levels are rising up to about 10 mm per year. This is having disastrous consequences in the form of wetlands loss in the region, estimated to be as much as 65 km2 per year in the Mississippi Delta area of Louisiana alone. Beach erosion is also significant along both the Gulf and Atlantic coasts, resulting in ever-increasing exposure of fixed structures to the damaging impacts of storms. The especially high rates of sea level rise in Louisiana and Texas are a result of their particular geomorphology, and anthropogenic alterations in the form of sediment diversion and withdrawal of underground fluids. The average long-term local rate of sea level rise on the rest of the U.S. East and Gulf coasts when corrected for glacial isostatic adjustment is about 2 mm per year, in conformity with 20th century global sea level rise. U.S. East and Gulf coast tide gauge records also have regionally coherent low frequency (decadal and longer) variations that need to be understood because of their impact on wetlands loss, and to enable accurate determination of long-term trends of sea level rise.

Boiling point measurement of a small amount of brake fluid by thermocouple and its application.

PubMed

Mogami, Kazunari

2002-09-01

This study describes a new method for measuring the boiling point of a small amount of brake fluid using a thermocouple and a pear shaped flask. The boiling point of brake fluid was directly measured with an accuracy that was within approximately 3 C of that determined by the Japanese Industrial Standards method, even though the sample volume was only a few milliliters. The method was applied to measure the boiling points of brake fluid samples from automobiles. It was clear that the boiling points of brake fluid from some automobiles dropped to approximately 140 C from about 230 C, and that one of the samples from the wheel cylinder was approximately 45 C lower than brake fluid from the reserve tank. It is essential to take samples from the wheel cylinder, as this is most easily subjected to heating.

Self-referencing remote optical probe

DOEpatents

O'Rourke, Patrick E.; Prather, William S.; Livingston, Ronald R.

1991-01-01

A probe for remote spectrometric measurements of fluid samples having a hollow probe body with a sliding reflective plug therein and a lens at one end, ports for admitting and expelling the fluid sample and a means for moving the reflector so that reference measurement can be made with the reflector in a first position near the lens and a sample measurement can be made with the reflector away from the lens and the fluid sample between the reflector and the lens. Comparison of the two measurements will yield the composition of the fluid sample. The probe is preferably used for remote measurements and light is carried to and from the probe via fiber optic cables.

Self-referencing remote optical probe

DOEpatents

O'Rourke, P.E.; Prather, W.S.; Livingston, R.R.

1991-08-13

A probe is described for remote spectrometric measurements of fluid samples having a hollow probe body with a sliding reflective plug therein and a lens at one end, ports for admitting and expelling the fluid sample and a means for moving the reflector so that reference measurement can be made with the reflector in a first position near the lens and a sample measurement can be made with the reflector away from the lens and the fluid sample between the reflector and the lens. Comparison of the two measurements will yield the composition of the fluid sample. The probe is preferably used for remote measurements and light is carried to and from the probe via fiber optic cables. 3 figures.

Genesis of Silica-Carbonate Type Mercury Ore Deposits in Coast Range California from Mantle Derived Fluids

NASA Astrophysics Data System (ADS)

Rytuba, J. J.; Kirby, S. H.; Kellner, C. R.

2016-12-01

In the Coast Range of California 51 major mercury (Hg) deposits and numerous smaller Hg occurrences began forming when subduction transitioned to the transpressive continental-transform kinematics of the San Andreas Fault System. The Hg deposits become progressively younger to the north reflecting the change in tectonic environment as the Mendocino Triple Junction moved 400 km northward since the Miocene to its present location in northern California. The silica-carbonate mercury deposits are vein and replacement ore bodies developed within and adjacent to serpentinite that was emplaced along regional faults and altered to an assemblage of silica and carbonate minerals. The initial alteration process consists of the addition of carbonate to the serpentinite followed by introduction of silica into the central core. The peripheral zone of calcite-dolomite veining may extend for several kilometers outward from a mercury deposit. The large Hg deposits formed in structural traps, such as antiformal structures, and the ores locally extend into adjacent clastic metasedimentary rocks. The mineralogy of the primary ores is simple consisting of cinnabar, metacinnabar and elemental Hg. The deposits formed from low-temperature, <120oC, CO2-CH4-H2S-rich fluids. The hydrothermal fluids are consistent with a mantle source water derived from the former forearc during subduction and after the transition to transpressive continental-transform boundary as proposed by Kirby et al. (EPS, 2014). Some of the silica-carbonate Hg deposits are overprinted by younger hot spring type Hg mineralization associated temporally with volcanic vents. These Hg deposits have distinctly different types of alteration and geochemistry and formed in the near surface from meteoric waters.

Detection of Nitrobenzodiazepines and Their 7-Amino Metabolites in Oral Fluid.

PubMed

Vindenes, Vigdis; Strand, Dag Helge; Koksæter, Paul; Gjerde, Hallvard

2016-05-01

Clonazepam, nitrazepam and flunitrazepam are frequently used benzodiazepines, both as prescribed medication and as drugs of abuse. Little is, however, known about how these drugs are excreted in oral fluid. It has been claimed that the parent drugs are more likely to be detected in oral fluid than the 7-amino metabolites. The aim of this study was to investigate whether the parent drugs or the 7-amino metabolites of the nitrobenzodiazepines were most frequently detected in authentic oral fluid samples. Oral fluid samples were collected from patients undergoing opioid maintenance treatment. Cases where clonazepam, nitrazepam, flunitrazepam and/or their metabolites were detected were included. The samples were collected using the Intercept Oral Specimen Collection Device. A cutoff concentration of 1 nM (∼0.3 ng/mL) in oral fluid-buffer mixture was applied for all the substances. A total of 1,001 oral fluid samples were positive for clonazepam and/or 7-aminoclonazepam; both substances were detected in 707 samples, only the parent drug in 64 cases and only the metabolite in 230 cases. For nitrazepam, both substances were detected in 139 samples; only the parent drug in 16 cases and only the metabolite in 56 cases. Flunitrazepam only was not detected in any sample; both substances were detected in one of these cases, and only the metabolite in three cases. This study revealed that 7-amino metabolites were more likely to be detected in oral fluid than the parent drugs. © The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Technical note: A device for obtaining time-integrated samples of ruminal fluid

USGS Publications Warehouse

Corley, R. N.; Murphy, M.R.; Lucena, J.; Panno, S.V.

1999-01-01

A device was adapted to allow for time-integrated sampling of fluid from the rumen via a cannula. The sampler consisted of a cup-shaped ceramic filter positioned in the ventral rumen of a cannulated cow and attached to a tube through which fluid entering the filter was removed continuously using a peristaltic pump. Rate of ruminal fluid removal using the device was monitored over two 36-h periods (at 6-h intervals) and was not affected (P > .05) by time, indicating that the system was not susceptible to clogging during this period. Two cows having ad libitum access to a totally mixed ration were used in a split-block design to evaluate the utility of the system for obtaining time-integrated samples of ruminal fluid. Ruminal fluid VFA concentration and pattern in samples collected in two replicated 8-h periods by the time-integrated sampler (at 1-h intervals) were compared with composite samples collected using a conventional suction-strainer device (at 30-min intervals). Each 8-h collection period started 2 h before or 6 h after feeding. Results indicated that total VFA concentration was not affected (P > .05) by the sampling method. Volatile fatty acid patterns were likewise unaffected (P > .05) except that acetate was 2.5% higher (P < .05) in samples collected 2 h before feeding and valerate was 5% higher (P < .05) in samples collected 6 h after feeding by the suction-strainer device. Although significant, these differences were not considered physiologically important. We concluded that use of the ceramic filter improved the sampling of ruminal fluid by simplifying the technique and allowing time-integrated samples to be obtained.

Prevalence of Salmonella spp. and thermophilic Campylobacter spp. in the small Asian mongoose (Herpestes javanicus) in Barbados, West Indies.

PubMed

Rhynd, Kamara J R; Leighton, Patrick A; Elcock, David A; Whitehall, Pamela J; Rycroft, Andrew; Macgregor, Shaheed K

2014-12-01

From April to July 2005, rectal swabs were collected from 48 free-ranging small Asian mongooses (Herpestes javanicus) on the east and south coasts of Barbados and analyzed for Salmonella and Campylobacter spp. Salmonella was recovered in 21.12% (7/33) of mongooses at the east-coast site and 26.67% (4/15) at the south-coast site. Four serotypes were isolated: Salmonella enterica serovar Rubislaw, Kentucky, Javiana, and Panama. One east-coast sample of 11 tested for Campylobacter was positive (9.09%). These results indicate that mongooses in Barbados are carriers and shedders of Salmonella and Campylobacter spp. and are a potential wildlife reservoir for these enteropathogens.

Persistence of Coastal Vegetation in Supratidal Zones of Northern China

PubMed Central

Yang, Hongxiao; Chu, Jianmin

2013-01-01

Coastal vegetation comprises a number of coastal specialists and terrestrial generalists. It remains unclear how they persist on disturbed and undisturbed coastal conditions. We tested the hypothesis that coastal specialists may be superior to terrestrial generalists on supratidal zones of coasts, but their superiority can be influenced by human disturbances. Eight separate sandy coasts of the Shandong Peninsula were sampled, representing for disturbed and undisturbed sandy coasts. Plants growing on their supratidal zones were surveyed. On this basis, we compared the relative dominances, niche widths, and commonness of all species, and also analyzed species diversities of the coasts. Coastal specialists were found to be more common and widespread on supratidal zones of the sandy coasts than terrestrial generalists haphazardly invading from hinterlands. Coastal specialists exhibited lower Sørensen dissimilarities than terrestrial generalists among the coasts. Tourist trampling seemed more detrimental than pond fishery to coastal vegetation. Relative to terrestrial generalists, coastal specialists responded to human disturbances more deterministically, with steady decreases in species diversities. These evidences verify that coastal specialists are intrinsically superior to terrestrial generalists on supratidal zones of coasts, especially of undisturbed coasts, because their dispersal among coasts adapts well to local storm surge regime. They also validate that human disturbances can depress the superiority of coastal specialists, partly by inducing invasion of terrestrial generalists. PMID:24224026

Genetic Variation of 17 Wild Yellow Perch Populations from the Midwest and East Coast Analyzed Via Microsatellites

USDA-ARS?s Scientific Manuscript database

We used microsatellite loci, including seven newly developed by us, to analyze the population genetic structure of wild yellow perch Perca flavescens from 17 sampling areas in the Upper Midwest and East Coast of the United States. Our results revealed greater genetic differentiation and finer-scale ...

76 FR 30825 - Special Local Regulation; Olympia Harbor Days Tug Boat Races, Budd Inlet, WA

Federal Register 2010, 2011, 2012, 2013, 2014

2011-05-27

..., 2011. G.T. Blore, Rear Admiral, U.S. Coast Guard Commander, Thirteenth Coast Guard District. [FR Doc... standards (e.g., specifications of materials, performance, design, or operation; test methods; sampling..., paragraph (34)(g.) of the Instruction. This rule involves tug boat racing by various classes of tugboats in...

Maritime Route Delineation using AIS Data from the Atlantic Coast of the US

DOE Office of Scientific and Technical Information (OSTI.GOV)

Breithaupt, Stephen A.; Copping, Andrea; Tagestad, Jerry

2016-09-28

This study examines maritime routes between ports along the Atlantic coast of the US, utilising Automated Identification System (AIS) data for the years 2010 through 2012. The delineation of vessel routes conducted in this study was motivated by development planned for offshore Wind Energy Areas (WEAs) along the Atlantic coast of the US and the need to evaluate the effect of these development areas on commercial shipping. To this end, available AIS data were processed to generate commercial vessel tracks for individual vessels, though cargo vessels are the focus in this study. The individual vessel tracks were sampled at transectsmore » placed along the Atlantic coast. The transect samples were analysed and partitioned by voyages between Atlantic ports to facilitate computation of vessel routes between ports. The route boundary analysis utilised a definition from UK guidance in which routes' boundaries encompassed 95% of the vessel traffic between ports. In addition to delineating route boundaries, we found multi-modal transverse distributions of vessels for well-travelled routes, which indicated preference for lanes of travel within the delineated routes.« less

Lead and cadmium concentrations in seawater and algae of the Tunisian coast.

PubMed

El Ati-Hellal, M; Hedhili, A; Hellal, F; Boujlel, K; Dachraoui, M; Bousnina, M; Ghorbel, H; Ndhif, M

2005-01-01

Both lead and cadmium are toxic trace metals, even in very weak concentrations. The aim of this study was to estimate lead and cadmium pollution in various sites of the Tunisian coast and to verify the possibility of modification of the algae bioconcentration power according to water physico-chemical conditions. Our study concerned 99 samples of algae and 99 samples of seawater, taken in different sites of the Tunisian littoral. The analysis was realized by atomic absorption spectrophotometry (oven graphite). In algae, Sfax site presented the highest concentrations of lead when Sousse site showed the lowest ones. In seawater, the most amounts of lead were observed in Bizerte, Mahdia and Sfax sites, and those of cadmium in Bizerte and Medenine coasts. Bizerte's coast seems to be the most exposed zone to pollution. Indeed, the intensification of sea traffic may take place on this pollution because hydrocarbons derived from petroleum contain some tetraethylic lead characterised by its great toxicity. Sousse's region is the least polluted zone; it might be due to the development of tourism and a strict regulation of pollution in this district.

Evaluating Oral Fluid as a Screening Tool for Lead Poisoning.

PubMed

Gardner, Sher Lynn; Geller, Robert J; Hannigan, Robyn; Sun, Yu; Mangla, Anil

2016-11-01

Screening for lead poisoning is necessary in young children, but obtaining the needed blood sample is unpleasant and sometimes very difficult. Use of an alternative screening method that is less unpleasant and less difficult would likely help to increase the percent of children receiving screening. To evaluate the correlation of oral fluid and blood lead in a clinical setting, and to ascertain the acceptability and feasibility of obtaining oral fluid from a young child in the clinical setting. Oral fluid samples were collected from a convenience sample of 431 children aged 6 months to 5 years already due to receive a blood lead test in a primary care clinic. Blood lead results obtained at the same time were available for 407 children. The results of the two tests were compared with the blood lead test considered to be the "gold standard". Data analysis used Pearson correlations, scatter plots, linear regression, ANOVA and Bland-Altman analysis. 431 patients had oral fluid samples available for analysis, and 407 patients had blood samples available. Patients who had both blood concentrations <5 µg/dL and oral fluid values below the screening cutoff value were 223, while eight had both blood concentrations ≥ 5 µg/dL and oral fluid values above the screening threshold. Elevated oral fluid but blood lead values less than the value recommended for further intervention occurred in 176; no patients had elevated blood lead values with below-intervention oral fluid values. The negative predictive value of an oral fluid lead below the screening cutoff value was 100%. The use of oral fluid to screen for elevated body burdens of lead instead of the usual blood lead sample is feasible with a negative predictive value of 100%, while eliminating the need for blood for lead screening in more than half of these children. © The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Influence of storage conditions on aluminum concentrations in serum, dialysis fluid, urine, and tap water.

PubMed

Wilhelm, M; Ohnesorge, F K

1990-01-01

The influence of storage temperature, vessel type, and treatment on alterations of aluminum (Al) concentrations in serum, urine, and dialysis fluid samples was studied at three different concentrations for each sample over an 18-month period. Furthermore, the influence of acidification on Al levels in tap water, urine, and dialysis fluid samples was studied over a four-month period. Al was measured by atomic absorption spectrometry. Sample storage in glass vessels was unsuitable, whereas only minor alterations of Al levels were observed with storage in polypropylene tubes, polystyrene tubes, and Monovettes. By using appropriate plastic containers, acid washing of the vessels showed no improvement. Frozen storage was superior compared with 4 degrees C, whereas storage at -80 degrees C offered no advantage compared with storage at -20 degrees C. Acidification of tap water samples was necessary to stabilize Al levels during storage. No striking effect of acidification on Al levels in urine and dialysis fluid samples was found. It is concluded that longterm storage of serum, urine, tap water, and dialysis fluid samples is possible if appropriate conditions are used.

Geographic variation in polychorinated biphenyl and organochlorine pesticide concentrations in the blubber of bottlenose dolphins from the US Atlantic coast.

PubMed

Hansen, Larry J; Schwacke, Lori H; Mitchum, Greg B; Hohn, Aleta A; Wells, Randall S; Zolman, Eric S; Fair, Patricia A

2004-02-05

Concentrations of polychorinated biphenyls (PCBs) and other organochlorine contaminants (OCs) were measured in blubber collected from live bottlenose dolphins (Tursiops truncatus) at three sites along the United States Atlantic coast. Dolphins were sampled via surgical biopsy during capture-release studies near Charleston, South Carolina and Beaufort, North Carolina. Additional animals were sampled using remote biopsy techniques in estuarine waters near Charleston and from the Indian River Lagoon, Florida. Overall concentrations of major contaminant groups were found to vary between sites and mean concentrations of most OCs from male dolphins in the Indian River Lagoon were less than half of those measured from Charleston and Beaufort males. Geometric mean total PCB concentrations were 30, 27 and 14 microg/g lipid for male dolphins sampled in Beaufort, Charleston and the Indian River Lagoon, respectively. Significant variation related to sex- and age-class, as well as geographic sampling location, was seen in the PCB congener profiles. The measured PCB concentrations, although lower than those reported for stranded animals from the 1987/1988 epizootic along the United States mid-Atlantic coast, are sufficiently high to warrant concern for the health of dolphins from the sampled populations, particularly the animals near Charleston and Beaufort.

Detection of Enteric Viruses in Shellfish from the Norwegian Coast

PubMed Central

Myrmel, M.; Berg, E. M. M.; Rimstad, E.; Grinde, B.

2004-01-01

Common blue mussels (Mytilus edulis), horse mussels (Modiolus modiolus), and flat oysters (Ostrea edulis) obtained from various harvesting and commercial production sites along the Norwegian coast were screened for the presence of norovirus by a real-time reverse transcription (RT)-nested PCR assay and for possible indicators of fecal contamination, i.e., for F-specific RNA bacteriophages (F-RNA phages) by plaque assay and for human adenoviruses and human circoviruses by nested PCR assay. The aims were to obtain relevant information for assessing the risk of transmission of enteric viruses by shellfish and to investigate the potential of various indicator viruses in routine screening. Noroviruses were detected in 6.8% of the samples, and the indicators were detected in 23.8% (F-RNA phages), 18.6% (adenoviruses), and 8.0% (circoviruses) of the samples. A seasonal variation was observed, with the exception of circoviruses, with more positive samples in the winter. A positive correlation was found between F-RNA phages and noroviruses. However, F-RNA phages were present in only 43% of the norovirus-positive samples. The results show that mussels from the Norwegian coast can constitute a risk of infection with enteric viruses and that routine testing of samples may be justified. Advantages and disadvantages of various options for screening are discussed. PMID:15128518

Sulfur Metabolizing Microbes Dominate Microbial Communities in Andesite-Hosted Shallow-Sea Hydrothermal Systems

PubMed Central

Zhang, Yao; Zhao, Zihao; Chen, Chen-Tung Arthur; Tang, Kai; Su, Jianqiang; Jiao, Nianzhi

2012-01-01

To determine microbial community composition, community spatial structure and possible key microbial processes in the shallow-sea hydrothermal vent systems off NE Taiwan’s coast, we examined the bacterial and archaeal communities of four samples collected from the water column extending over a redoxocline gradient of a yellow and four from a white hydrothermal vent. Ribosomal tag pyrosequencing based on DNA and RNA showed statistically significant differences between the bacterial and archaeal communities of the different hydrothermal plumes. The bacterial and archaeal communities from the white hydrothermal plume were dominated by sulfur-reducing Nautilia and Thermococcus, whereas the yellow hydrothermal plume and the surface water were dominated by sulfide-oxidizing Thiomicrospira and Euryarchaeota Marine Group II, respectively. Canonical correspondence analyses indicate that methane (CH4) concentration was the only statistically significant variable that explains all community cluster patterns. However, the results of pyrosequencing showed an essential absence of methanogens and methanotrophs at the two vent fields, suggesting that CH4 was less tied to microbial processes in this shallow-sea hydrothermal system. We speculated that mixing between hydrothermal fluids and the sea or meteoric water leads to distinctly different CH4 concentrations and redox niches between the yellow and white vents, consequently influencing the distribution patterns of the free-living Bacteria and Archaea. We concluded that sulfur-reducing and sulfide-oxidizing chemolithoautotrophs accounted for most of the primary biomass synthesis and that microbial sulfur metabolism fueled microbial energy flow and element cycling in the shallow hydrothermal systems off the coast of NE Taiwan. PMID:22970260

Sulfur metabolizing microbes dominate microbial communities in Andesite-hosted shallow-sea hydrothermal systems.

PubMed

Zhang, Yao; Zhao, Zihao; Chen, Chen-Tung Arthur; Tang, Kai; Su, Jianqiang; Jiao, Nianzhi

2012-01-01

To determine microbial community composition, community spatial structure and possible key microbial processes in the shallow-sea hydrothermal vent systems off NE Taiwan's coast, we examined the bacterial and archaeal communities of four samples collected from the water column extending over a redoxocline gradient of a yellow and four from a white hydrothermal vent. Ribosomal tag pyrosequencing based on DNA and RNA showed statistically significant differences between the bacterial and archaeal communities of the different hydrothermal plumes. The bacterial and archaeal communities from the white hydrothermal plume were dominated by sulfur-reducing Nautilia and Thermococcus, whereas the yellow hydrothermal plume and the surface water were dominated by sulfide-oxidizing Thiomicrospira and Euryarchaeota Marine Group II, respectively. Canonical correspondence analyses indicate that methane (CH(4)) concentration was the only statistically significant variable that explains all community cluster patterns. However, the results of pyrosequencing showed an essential absence of methanogens and methanotrophs at the two vent fields, suggesting that CH(4) was less tied to microbial processes in this shallow-sea hydrothermal system. We speculated that mixing between hydrothermal fluids and the sea or meteoric water leads to distinctly different CH(4) concentrations and redox niches between the yellow and white vents, consequently influencing the distribution patterns of the free-living Bacteria and Archaea. We concluded that sulfur-reducing and sulfide-oxidizing chemolithoautotrophs accounted for most of the primary biomass synthesis and that microbial sulfur metabolism fueled microbial energy flow and element cycling in the shallow hydrothermal systems off the coast of NE Taiwan.

[Discrimination of varieties of brake fluid using visual-near infrared spectra].

PubMed

Jiang, Lu-lu; Tan, Li-hong; Qiu, Zheng-jun; Lu, Jiang-feng; He, Yong

2008-06-01

A new method was developed to fast discriminate brands of brake fluid by means of visual-near infrared spectroscopy. Five different brands of brake fluid were analyzed using a handheld near infrared spectrograph, manufactured by ASD Company, and 60 samples were gotten from each brand of brake fluid. The samples data were pretreated using average smoothing and standard normal variable method, and then analyzed using principal component analysis (PCA). A 2-dimensional plot was drawn based on the first and the second principal components, and the plot indicated that the clustering characteristic of different brake fluid is distinct. The foregoing 6 principal components were taken as input variable, and the band of brake fluid as output variable to build the discriminate model by stepwise discriminant analysis method. Two hundred twenty five samples selected randomly were used to create the model, and the rest 75 samples to verify the model. The result showed that the distinguishing rate was 94.67%, indicating that the method proposed in this paper has good performance in classification and discrimination. It provides a new way to fast discriminate different brands of brake fluid.

Method of and apparatus for determining the similarity of a biological analyte from a model constructed from known biological fluids

DOEpatents

Robinson, Mark R.; Ward, Kenneth J.; Eaton, Robert P.; Haaland, David M.

1990-01-01

The characteristics of a biological fluid sample having an analyte are determined from a model constructed from plural known biological fluid samples. The model is a function of the concentration of materials in the known fluid samples as a function of absorption of wideband infrared energy. The wideband infrared energy is coupled to the analyte containing sample so there is differential absorption of the infrared energy as a function of the wavelength of the wideband infrared energy incident on the analyte containing sample. The differential absorption causes intensity variations of the infrared energy incident on the analyte containing sample as a function of sample wavelength of the energy, and concentration of the unknown analyte is determined from the thus-derived intensity variations of the infrared energy as a function of wavelength from the model absorption versus wavelength function.

Well fluid isolation and sample apparatus and method

DOEpatents

Schalla, Ronald; Smith, Ronald M.; Hall, Stephen H.; Smart, John E.

1995-01-01

The present invention specifically permits purging and/or sampling of a well but only removing, at most, about 25% of the fluid volume compared to conventional methods and, at a minimum, removing none of the fluid volume from the well. The invention is an isolation assembly that is inserted into the well. The isolation assembly is designed so that only a volume of fluid between the outside diameter of the isolation assembly and the inside diameter of the well over a fluid column height from the bottom of the well to the top of the active portion (lower annulus) is removed. A seal may be positioned above the active portion thereby sealing the well and preventing any mixing or contamination of inlet fluid with fluid above the packer. Purged well fluid is stored in a riser above the packer. Ports in the wall of the isolation assembly permit purging and sampling of the lower annulus along the height of the active portion.

Thermal conductivity enhancement and sedimentation reduction of magnetorheological fluids with nano-sized Cu and Al additives

NASA Astrophysics Data System (ADS)

Rahim, M. S. A.; Ismail, I.; Choi, S. B.; Azmi, W. H.; Aqida, S. N.

2017-11-01

This work presents enhanced material characteristics of smart magnetorheological (MR) fluids by utilizing nano-sized metal particles. Especially, enhancement of thermal conductivity and reduction of sedimentation rate of MR fluids those are crucial properties for applications of MR fluids are focussed. In order to achieve this goal, a series of MR fluid samples are prepared using carbonyl iron particles (CIP) and hydraulic oil, and adding nano-sized particles of copper (Cu), aluminium (Al), and fumed silica (SiO2). Subsequently, the thermal conductivity is measured by the thermal property analyser and the sedimentation of MR fluids is measured using glass tubes without any excitation for a long time. The measured thermal conductivity is then compared with theoretical models such as Maxwell model at various CIP concentrations. In addition, in order to show the effectiveness of MR fluids synthesized in this work, the thermal conductivity of MRF-132DG which is commercially available is measured and compared with those of the prepared samples. It is observed that the thermal conductivity of the samples is much better than MRF-132DG showing the 148% increment with 40 vol% of the magnetic particles. It is also observed that the sedimentation rate of the prepared MR fluid samples is less than that of MRF-132DG showing 9% reduction with 40 vol% of the magnetic particles. The mixture optimized sample with high conductivity and low sedimentation was also obtained. The magnetization of the sample recorded an enhancement of 70.5% when compared to MRF-132DG. Furthermore, the shear yield stress of the sample were also increased with and without the influence of magnetic field.

Microsatellite variation in Donax trunculus from the Iberian Peninsula, with particular attention to Galician estuaries (NW Spain)

NASA Astrophysics Data System (ADS)

Nantón, A.; Arias-Pérez, A.; Freire, R.; Fernández-Pérez, J.; Nóvoa, S.; Méndez, J.

2017-10-01

Genetic variation and population structure information is essential for conservation and stock management policies. The wedge clam Donax trunculus is an important fishing resource in the Iberian Peninsula and in some areas, such as the northwestern Spain, wild stocks have decreased greatly. Despite this, information is mainly from the southwestern Atlantic to the northwestern Mediterranean of the Iberian Peninsula. In this study, fifteen microsatellite loci were examined at 17 localities along the Iberian Peninsula to characterize its genetic diversity and population structure. Particular attention was paid to the northwestern Atlantic area, and to test if the pattern previously described for this species is confirmed when localities distributed across the Atlantic coast are included and different microsatellite markers are used. All localities displayed similar allelic richness values and heterozygosity levels but when genetic diversity levels were compared among groups of localities, tests were significant and samples from the northwestern area (Galicia) showed the lowest values. The analysis of population structure indicated that localities from the Atlantic coast are genetically homogeneous although some samples showed significant pairwise Fst values. These values were low and Bayesian analysis of genetic differentiation did not show a consistent structure along the Atlantic coast of the Iberian Peninsula. However, Atlantic samples were genetically different from those located in Mediterranean coast, which may be explained by the existence of the Almeria-Oran front. Moreover, Fuengirola, locality situated in the Alboran Sea between the Strait of Gibraltar and Mediterranean Sea, showed significant differences from all remaining localities included in the study. Overall, the data showed the existence of genetic homogeneity along the Atlantic coast of the Iberian Peninsula and support the three management units (Atlantic Ocean, the Alboran Sea and the northwestern Mediterranean) previously described in this species. Reduced diversity in the northwestern Spain samples could be related to the exploitation of this resource.

An Investigation of Potential Uses of Animals in Coast Guard Operations

DTIC Science & Technology

1981-06-01

wellhead assembly ("Christmas tree") which Is a series of valves, controls and connections designed to regulate the flow of fluids from the -well...personnel reconnaissance. 9 0 Infrared emitters have been designed and tested for locating patrol and sentry dogs at night.91 Finally, in Project...principle of operant conditioning is "shaping" or the method of successive approximations. In order to design a completely new -3 -83- Si . behavior

Refinement of Regional Distance Seismic Moment Tensor and Uncertainty Analysis for Source-Type Identification

DTIC Science & Technology

2014-09-02

release; distribution is unlimited. rock zone which provides a pathway for formation fluids, natural gas and crude oil from deeper strata that are... southeast Louisiana (Figure 21). It is a part of the Gulf Coast salt basin which exhibits many salt structures formed by upward flow of sedimentary salt...primarily, evaporites) on account of low density of salt and overburden pressures caused by younger sedimentary deposits (Beckman and Williamson, 1990

Trace level detection of analytes using artificial olfactometry

NASA Technical Reports Server (NTRS)

Lewis, Nathan S. (Inventor); Severin, Erik J. (Inventor); Wong, Bernard (Inventor)

2002-01-01

The present invention provides a device for detecting the presence of an analyte, such as for example, a lightweight device, including: a sample chamber having a fluid inlet port for the influx of the analyte; a fluid concentrator in flow communication with the sample chamber wherein the fluid concentrator has an absorbent material capable of absorbing the analyte and capable of desorbing a concentrated analyte; and an array of sensors in fluid communication with the concentrated analyte to be released from the fluid concentrator.

Hydraulic Fracturing Fluid Analysis for Regulatory Parameters - A Progress Report

EPA Pesticide Factsheets

This presentation is a progress report on the analysis of Hydraulic Fracturing Fluids for regulatory compounds outlined in the various US EPA methodologies. Fracturing fluids vary significantly in consistency and viscosity prior to fracturing. Due to the nature of the fluids the analytical challenges will have to be addressed. This presentation also outlines the sampling issues associated with the collection of dissolved gas samples.

Apparatus and method for nanoflow liquid jet and serial femtosecond x-ray protein crystallography

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bogan, Michael J.; Laksmono, Hartawan; Sierra, Raymond G.

Techniques for nanoflow serial femtosecond x-ray protein crystallography include providing a sample fluid by mixing a plurality of a first target of interest with a carrier fluid and injecting the sample fluid into a vacuum chamber at a rate less than about 4 microliters per minute. In some embodiments, the carrier fluid has a viscosity greater than about 3 centipoise.

Evaluation of Fluid Absorbency of Retraction Cords after Immersing in Two Retraction Medicaments - An In-vitro Study.

PubMed

Vishnubhotla, Gautam; Basapogu, Sreeramulu; Karnati, Rajeev Kumar Reddy; Dasari, Pradeep Prabhu; Thommandru, Mani Victor; Bethu, Mohana Bindu

2016-11-01

Dry retraction cords help to displace the gingiva and also to absorb the gingival crevicular fluid and saliva to maintain a dry field. When used along with medicaments whether these medicaments help to improve the absorption of fluid or affect the fluid absorption by decreasing the efficiency of the retraction cord is unknown. The aim of the study was to know the effect of various medicaments on the fluid absorbency of the retraction cords and also, to know whether the thickness of the retraction cords influences it's fluid absorbency. A total of 90 samples of 5cm length retraction cords were taken. Cords were divided into 30 samples for each cord thickness of 0, 1 and 2. Of these 30 samples, 10 samples were used to measure dry weight (Group I), 10 samples were immersed in 15.5% ferric sulfate (Group II) and remaining 10 samples were immersed in 10% aluminium chloride (Group III) for a period of 20 minutes. The excess medicament was removed by blotting paper. Initial weight was recorded. Following this, five cords from each group were immersed in plasma solution and remaining in artificial saliva for 10 minutes. Then these were taken out and measured. The amount of the fluid absorbed was determined by subtracting the weight before fluid immersion (weight after immersion in test medicament) from the weight after fluid immersion (weight after immersion in plasma or artificial saliva). The study was analyzed through one-way ANOVA and Bonferroni post-hoc comparisons for pair wise differences. When immersed in medicaments, there is a significant difference in absorption of fluids (artificial saliva and plasma) between the untreated dry cord and cord treated with 15.5% ferric sulfate (p<0.05). But, there was no significant difference in fluid absorption between the dry untreated cord and cord treated with 10% aluminum chloride and between cords treated with 15.5% ferric sulfate and 10% aluminum chloride. Ferric sulfate (15.5%) is a better medicament for absorption of fluid.

Comparison of microdialysis sampling perfusion fluid components on the foreign body reaction in rat subcutaneous tissue.

PubMed

Keeler, Geoffrey D; Durdik, Jeannine M; Stenken, Julie A

2014-06-16

Microdialysis sampling is a commonly used technique for collecting solutes from the extracellular space of tissues in laboratory animals and humans. Large molecular weight solutes can be collected using high molecular weight cutoff (MWCO) membranes (100kDa or greater). High MWCO membranes require addition of high molecular weight dextrans or albumin to the perfusion fluid to prevent fluid loss via ultrafiltration. While these perfusion fluid additives are commonly used during microdialysis sampling, the tissue response to the loss of these compounds across the membrane is poorly understood. Tissue reactions to implanted microdialysis sampling probes containing different microdialysis perfusion fluids were compared over a 7-day time period in rats. The base perfusion fluid was Ringer's solution supplemented with either bovine serum albumin (BSA), rat serum albumin (RSA), Dextran-70, or Dextran-500. A significant inflammatory response to Dextran-70 was observed. No differences in the tissue response between BSA and RSA were observed. Among these agents, the BSA, RSA, and Dextran-500 produced a significantly reduced inflammatory response compared to the Dextran-70. This work demonstrates that use of Dextran-70 in microdialysis sampling perfusion fluids should be eliminated and replaced with Dextran-500 or other alternatives. Copyright © 2013 Elsevier B.V. All rights reserved.

Single nucleotide polymorphisms in native South American Atlantic coast populations of smooth shelled mussels: hybridization with invasive European Mytilus galloprovincialis.

PubMed

Zbawicka, Małgorzata; Trucco, María I; Wenne, Roman

2018-02-22

Throughout the world, harvesting of mussels Mytilus spp. is based on the exploitation of natural populations and aquaculture. Aquaculture activities include transfers of spat and live adult mussels between various geographic locations, which may result in large-scale changes in the world distribution of Mytilus taxa. Mytilus taxa are morphologically similar and difficult to distinguish. In spite of much research on taxonomy, evolution and geographic distribution, the native Mytilus taxa of the Southern Hemisphere are poorly understood. Recently, single nucleotide polymorphisms (SNPs) have been used to clarify the taxonomic status of populations of smooth shelled mussels from the Pacific coast of South America. In this paper, we used a set of SNPs to characterize, for the first time, populations of smooth shelled mussels Mytilus from the Atlantic coast of South America. Mytilus spp. samples were collected from eastern South America. Six reference samples from the Northern Hemisphere were used: Mytilus edulis from USA and Northern Ireland, Mytilus trossulus from Canada, and Mytilus galloprovincialis from Spain and Italy. Two other reference samples from the Southern Hemisphere were included: M. galloprovincialis from New Zealand and Mytilus chilensis from Chile. Fifty-five SNPs were successfully genotyped, of which 51 were polymorphic. Population genetic analyses using the STRUCTURE program revealed the clustering of eight populations from Argentina (Mytilus platensis) and the clustering of the sample from Ushuaia with M. chilensis from Chile. All individuals in the Puerto Madryn (Argentina) sample were identified as M. platensis × M. galloprovincialis F2 (88.89%) hybrids, except one that was classified as Mediterranean M. galloprovincialis. No F1 hybrids were observed. We demonstrate that M. platensis (or Mytilus edulis platensis) and M. chilensis are distinct native taxa in South America, which indicates that the evolutionary histories of Mytilus taxa along the Atlantic and Pacific coasts differ. M. platensis is endangered by hybridization with M. galloprovincialis that was introduced from Europe into the Puerto Madryn area in Argentina, presumably by accidental introduction via ship traffic. We confirm the occurrence of a native M. chilensis population in southern Argentina on the coast of Patagonia.

Possible maternal offloading of metals in the plasma, uterine and capsule fluid of pregnant ragged-tooth sharks (Carcharias taurus) on the east coast of South Africa.

PubMed

Naidoo, Kristina; Chuturgoon, Anil; Cliff, Geremy; Singh, Sanil; Ellis, Megan; Otway, Nicholas; Vosloo, Andre; Gregory, Michael

2017-07-01

We studied the possible metal offloading onto the progeny of three pregnant female ragged-tooth sharks (Carcharias taurus) (C. taurus). The presences of five metals, i.e. aluminium (Al), arsenic (As), cadmium (Cd), lead (Pb) and selenium (Se) were validated by mass spectrometry in the maternal plasma as well as the intracapsular and uterine fluids (UF) in which embryos develop. Metals were ranked in a decreasing concentration as follows: Plasma: As > Al > Se > Pb > Cd; ICF: As > Se > Al > Cd > Pb and UF: As > Se > Al > Cd > Pb. As was present in the highest concentration in all three sharks. Al, Pb and Cd were found to be the highest within the plasma, while concentrations of Se were similar in all three fluids. These results indicate that C. taurus embryos are exposed to metals during early development, but the impact of this exposure remains unknown. To the best of our knowledge, this is the first investigation to confirm the presence of metals in the fluids that surround the developing C. taurus embryos, a species that is already listed as vulnerable.

Sampling guidelines for oral fluid-based surveys of group-housed animals.

PubMed

Rotolo, Marisa L; Sun, Yaxuan; Wang, Chong; Giménez-Lirola, Luis; Baum, David H; Gauger, Phillip C; Harmon, Karen M; Hoogland, Marlin; Main, Rodger; Zimmerman, Jeffrey J

2017-09-01

Formulas and software for calculating sample size for surveys based on individual animal samples are readily available. However, sample size formulas are not available for oral fluids and other aggregate samples that are increasingly used in production settings. Therefore, the objective of this study was to develop sampling guidelines for oral fluid-based porcine reproductive and respiratory syndrome virus (PRRSV) surveys in commercial swine farms. Oral fluid samples were collected in 9 weekly samplings from all pens in 3 barns on one production site beginning shortly after placement of weaned pigs. Samples (n=972) were tested by real-time reverse-transcription PCR (RT-rtPCR) and the binary results analyzed using a piecewise exponential survival model for interval-censored, time-to-event data with misclassification. Thereafter, simulation studies were used to study the barn-level probability of PRRSV detection as a function of sample size, sample allocation (simple random sampling vs fixed spatial sampling), assay diagnostic sensitivity and specificity, and pen-level prevalence. These studies provided estimates of the probability of detection by sample size and within-barn prevalence. Detection using fixed spatial sampling was as good as, or better than, simple random sampling. Sampling multiple barns on a site increased the probability of detection with the number of barns sampled. These results are relevant to PRRSV control or elimination projects at the herd, regional, or national levels, but the results are also broadly applicable to contagious pathogens of swine for which oral fluid tests of equivalent performance are available. Copyright © 2017 The Authors. Published by Elsevier B.V. All rights reserved.

First occurrence of Caprella scaura Templeton, 1836 (Crustacea: Amphipoda) on off-coast fish farm cages in the Mediterranean Sea

NASA Astrophysics Data System (ADS)

Fernandez-Gonzalez, V.; Sanchez-Jerez, P.

2014-03-01

The non-indigenous caprellid Caprella scaura Templeton, 1836, native to the western Indian Ocean, was firstly recorded in the Mediterranean Sea in 1994, and all Mediterranean populations discovered to date are related to shoreline areas. A total of ten fish farms were sampled off the coasts of Spain (4), Italy (1), Croatia (2), Greece (1) and Malta (2). This is the first time that C. scaura has been reported from off-coast areas. Reproducing populations have been detected in fouling communities of three tuna farms off the coast of Croatia and Malta, which also signifies the first confirmed record of this species in both countries. The occurrence of successfully established and thriving populations of C. scaura Templeton, 1836 at floating off-coast fish farms underlines the importance of these structures as stepping stones in the species.

PREDICTING BENTHIC STRESS IN RELATION TO SEDIMENT CONTAMINATION FROM INTEGRATED ASSESSMENTS ALONG THE U.S. ATLANTIC AND GULF OF MEXICO COASTS

EPA Science Inventory

Matching data on sediment contaminants and macroinfauna from 1,349 samples collected in estuaries along the U.S. Atlantic and Gulf of Mexico coasts were used to estimate risks of bioeffects from multiple-contaminant exposure. Sediment contamination was expressed as the mean ratio...

Long-term trends in coast live oak and tanoak stands affected by Phytophthora ramorum canker (Sudden Oak Death)

Treesearch

Tedmund J. Swiecki; Elizabeth Bernhardt

2010-01-01

Permanent plots were established in 2000 to examine how tree and site factors affect risk of Phytophthora ramorum stem canker (sudden oak death [SOD]) and determine how affected stands change over time due to disease. P. ramorum canker was prevalent in the sampled coast live oak (Quercus agrifolia) or...

Rangewide Genetic Variation in Coast Redwood Populations at a Chloroplast Microsatellite Locus

Treesearch

Chris Brinegar

2012-01-01

Old growth and second growth populations of coast redwood (Sequoia sempervirens) were sampled at 10 locations throughout its range and analyzed at a highly variable chloroplast microsatellite locus. Very low FST values indicated that there was no significant genetic differentiation between adjacent old growth and second growth populations at each location. Genetic...

Selected results from LLNL-Hughes RAR for West Coast Scotland Experiment 1992

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lehman, S.K.; Johnston, B.; Twogood, R.

1993-01-05

The joint US-UK 1992 West Coast Scotland Experiment (WCSEX) was held in the Sound of Sleat from June 6 to 25. The LLNL-Hughes team fielded a fully polarimetric X-band hill-side real aperture radar to collect internal wave wake data. We present here a sample data set of the best radar runs.

Randomised prospective study compares efficacy of five different stomach tubes for rumen fluid sampling in dairy cows.

PubMed

Steiner, S; Neidl, A; Linhart, N; Tichy, A; Gasteiner, J; Gallob, K; Baumgartner, W; Wittek, T

2015-01-10

The objective of the study was to compare the performance of five types of stomach tubes for rumen fluid sampling. Rumen fluid was sampled in rumen fistulated cows assigned to a 5×5 Latin square study design. The pH values of samples taken by stomach tubes and via fistulas were measured; the results were compared with indwelling sensor measurements. The practicability of the stomach tubes for regular use was tested in the field. Rumen fluid samples were obtained rapidly. Volumes for transfaunation could be obtained. The pH-values of samples taken with the four out of the five tubes (Dirksen, Geishauser, tube 4 and a simple water hose used with a gag) did not show significant differences to samples taken via rumen fistulas. Mean differences ranged between -0.02 and +0.09. Samples taken with tube 4 and the water hose showed also no significant differences to pH-sensor measurements. This study demonstrates that stomach tubes are suitable for rumen fluid sampling. Tube 4 seems to be the best probe for work in the field. It was well tolerated by the animals, saliva contamination is negligible. We, therefore, conclude that the evaluation of rumen acid base status in the field is possible. British Veterinary Association.

Mortality of sea lions along the central California coast linked to a toxic diatom bloom.

PubMed

Scholin, C A; Gulland, F; Doucette, G J; Benson, S; Busman, M; Chavez, F P; Cordaro, J; DeLong, R; De Vogelaere, A; Harvey, J; Haulena, M; Lefebvre, K; Lipscomb, T; Loscutoff, S; Lowenstine, L J; Marin, R; Miller, P E; McLellan, W A; Moeller, P D; Powell, C L; Rowles, T; Silvagni, P; Silver, M; Spraker, T; Trainer, V; Van Dolah, F M

2000-01-06

Over 400 California sea lions (Zalophus californianus) died and many others displayed signs of neurological dysfunction along the central California coast during May and June 1998. A bloom of Pseudo-nitzschia australis (diatom) was observed in the Monterey Bay region during the same period. This bloom was associated with production of domoic acid (DA), a neurotoxin that was also detected in planktivorous fish, including the northern anchovy (Engraulis mordax), and in sea lion body fluids. These and other concurrent observations demonstrate the trophic transfer of DA resulting in marine mammal mortality. In contrast to fish, blue mussels (Mytilus edulus) collected during the DA outbreak contained no DA or only trace amounts. Such findings reveal that monitoring of mussel toxicity alone does not necessarily provide adequate warning of DA entering the food web at levels sufficient to harm marine wildlife and perhaps humans.

Hg concentrations in fish from coastal waters of California and Western North America

USGS Publications Warehouse

Davis, Jay; Ross, John; Bezalel, Shira; Sim, Lawrence; Bonnema, Autumn; Ichikawa, Gary; Heim, Wes; Schiff, Kenneth C; Eagles-Smith, Collin A.; Ackerman, Joshua T.

2016-01-01

The State of California conducted an extensive and systematic survey of mercury (Hg) in fish from the California coast in 2009 and 2010. The California survey sampled 3483 fish representing 46 species at 68 locations, and demonstrated that methylHg in fish presents a widespread exposure risk to fish consumers. Most of the locations sampled (37 of 68) had a species with an average concentration above 0.3 μg/g wet weight (ww), and 10 locations an average above 1.0 μg/g ww. The recent and robust dataset from California provided a basis for a broader examination of spatial and temporal patterns in fish Hg in coastal waters of Western North America. There is a striking lack of data in publicly accessible databases on Hg and other contaminants in coastal fish. An assessment of the raw data from these databases suggested the presence of relatively high concentrations along the California coast and in Puget Sound, and relatively low concentrations along the coasts of Alaska and Oregon, and the outer coast of Washington. The dataset suggests that Hg concentrations of public health concern can be observed at any location on the coast of Western North America where long-lived predator species are sampled. Output from a linear mixed-effects model resembled the spatial pattern observed for the raw data and suggested, based on the limited dataset, a lack of trend in fish Hg over the nearly 30-year period covered by the dataset. Expanded and continued monitoring, accompanied by rigorous data management procedures, would be of great value in characterizing methylHg exposure, and tracking changes in contamination of coastal fish in response to possible increases in atmospheric Hg emissions in Asia, climate change, and terrestrial Hg control efforts in coastal watersheds.

Detection of porcine reproductive and respiratory syndrome virus (PRRSV) and influenza A virus (IAV) in oral fluid of pigs.

PubMed

Biernacka, Kinga; Karbowiak, Paweł; Wróbel, Paweł; Charęza, Tomasz; Czopowicz, Michał; Balka, Gyula; Goodell, Christa; Rauh, Rolf; Stadejek, Tomasz

2016-12-01

Recently oral fluid has become a novel sample type for pathogen nucleic acid and antibody detection, as it is easy to obtain with non-invasive procedures. The objective of the study was to analyze porcine reproductive and respiratory syndrome virus (PRRSV) and influenza A virus (IAV) circulation in growing pigs from three Polish production farms, using Real Time PCR and ELISA testing of oral fluid and serum. Oral fluids were collected every 2weeks, in the same 3-4 pens of pigs aged between 5 and 17weeks. Additionally, blood samples were collected every 4weeks from 4 pigs corresponding to the same pens as oral fluid and tested for the presence of PRRSV nucleic acid (pooled by 4) and antibodies. In farm A no PRRSV circulation was detected and only maternal antibodies were present. In farm B and farm C antibodies to PRRSV in serum and oral fluid were detected in most samples. In farm B PRRSV Type 1 was detected in 80.9% of oral fluid samples and in 58.3% of serum pools, and in farm C in 92.8% of oral fluid samples and 75% serum pools. Striking differences were observed between different pens in PRRSV detection patterns. In farms B and C ORF5 sequence analysis showed the presence of wild type strains which were about 84-85% identical to the modified live vaccine used. In all three farms two waves of IAV shedding with oral fluid were detected, in weaners and fatteners. Copyright © 2016 Elsevier Ltd. All rights reserved.

Boiling-induced formation of colloidal gold in black smoker hydrothermal fluids

USGS Publications Warehouse

Gartman, Amy; Hannington, Mark; Jamieson, John W.; Peterkin, Ben; Garbe-Schönberg, Dieter; Findlay, Alyssa J; Fuchs, Sebastian; Kwasnitschka, Tom

2017-01-01

Gold colloids occur in black smoker fluids from the Niua South hydrothermal vent field, Lau Basin (South Pacific Ocean), confirming the long-standing hypothesis that gold may undergo colloidal transport in hydrothermal fluids. Six black smoker vents, varying in temperature from 250 °C to 325 °C, were sampled; the 325 °C vent was boiling at the time of sampling and the 250 °C fluids were diffusely venting. Native gold particles ranging from <50 nm to 2 µm were identified in 4 of the fluid samples and were also observed to precipitate on the sampler during collection from the boiling vent. Total gold concentrations (dissolved and particulate) in the fluid samples range from 1.6 to 5.4 nM in the high-temperature, focused flow vents. Although the gold concentrations in the focused flow fluids are relatively high, they are lower than potential solubilities prior to boiling and indicate that precipitation was boiling induced, with sulfide lost upon boiling to exsolution and metal sulfide formation. Gold concentrations reach 26.7 nM in the 250 °C diffuse flow sample, and abundant native gold particles were also found in the fluids and associated sulfide chimney and are interpreted to be a product of colloid accumulation and growth following initial precipitation upon boiling. These results indicate that colloid-driven precipitation as a result of boiling, the persistence of colloids after boiling, and the accumulation of colloids in diffuse flow fluids are important mechanisms for the enrichment of gold in seafloor hydrothermal systems.

New Lubricants Protect Machines and the Environment

NASA Technical Reports Server (NTRS)

2007-01-01

In 1994, NASA and Lockheed Martin Space Operations commissioned Sun Coast Chemicals of Daytona Inc to develop a new type of lubricant that would be safe for the environment and help "grease the wheels" of the shuttle-bearing launcher platform. Founded in 1989, Sun Coast Chemicals is known amongst the racing circuit for effective lubricants that help overcome engine and transmission problems related to heat and wear damage. In a matter of weeks, Sun Coast Chemical produced the biodegradable, high-performance X-1R Crawler Track Lube. In 1996, Sun Coast Chemical determined there was a market for this new development, and introduced three derivative products, Train Track Lubricant, Penetrating Spray Lubricant, and Biodegradable Hydraulic Fluid, and then quickly followed with a gun lubricant/cleaner and a fishing rod and reel lubricant. Just recently, Sun Coast introduced the X-1R Corporation, which folds the high-performance, environmentally safe benefits into a full line of standard automotive and specially formulated racing products. The entire X-1R automotive product line has stood up to rigorous testing by groups such as the American Society of Mechanical Engineers, the Swedish National Testing and Research Institute, the Department of Mechanical Engineering at Oakland University (Rochester, Michigan), and Morgan-McClure Motorsports (Abingdon, Virginia). The X-1R Corporation also markets "handy packs" for simple jobs around the house, consisting of a multi-purpose, multi-use lubricant and grease. In 2003, The X-1R Corporation teamed up with Philadelphia-based Penn Tackle Manufacturing Co., a leading manufacturer of fishing tackle since 1932, to jointly develop and market a line of advanced lubrication products for saltwater and freshwater anglers

Trace element levels in mollusks from clean and polluted coastal marine sites in the Mediterranean, Red and North Seas

NASA Astrophysics Data System (ADS)

Herut, Barak; Kress, Nurit; Shefer, Edna; Hornung, Hava

1999-12-01

The trace element contamination levels in mollusks were evaluated for different marine coastal sites in the Mediterranean (Israeli coast), Red (Israeli coast) and North (German coast) Seas. Three bivalve species (Mactra corallina, Donax sp, and Mytilus edulis) and two gastropod species (Patella sp.and Cellana rota) were sampled at polluted and relatively clean sites, and their soft tissue analyzed for Hg, Cd, Zn, Cu, Mn and Fe concentrations. Representative samples were screened for organic contaminants [(DDE), polychlorinated biphenyls PCBs and polycyclic aromatic hydrocarbons (PAHs)] which exhibited very low concentrations at all sites. In the Red Sea, the gastropod C. rota showed low levels of Hg (below detection limit) and similar Cd concentrations at all the examined sites, while other trace elements (Cu, Zn, Mn, Fe) were slightly enriched at the northern beach stations. Along the Mediterranean coast of Israel, Hg and Zn were enriched in two bivalves (M. corallina and Donax sp.) from Haifa Bay, both species undergoing a long-term decrease in Hg based on previous studies. Significant Cd and Zn enrichment was detected in Patella sp. from the Kishon River estuary at the southern part of Haifa Bay. In general, Patella sp. and Donax sp. specimens from Haifa Bay exhibited higher levels of Cd compared to other sites along the Israeli Mediterranean coast, attributed to the enrichment of Cd in suspended particulate matter. Along the German coast (North Sea) M. edulis exhibited higher concentrations of Hg and Cd at the Elbe and Eider estuaries, but with levels below those found in polluted sites elsewhere.

Comparative evaluation of serum, FTA filter-dried blood and oral fluid as sample material for PRRSV diagnostics by RT-qPCR in a small-scale experimental study.

PubMed

Steinrigl, Adolf; Revilla-Fernández, Sandra; Wodak, Eveline; Schmoll, Friedrich; Sattler, Tatjana

2014-01-01

Recently, research into alternative sample materials, such as oral fluid or filter-dried blood has been intensified, in order to facilitate cost-effective and animal-friendly sampling of individuals or groups of pigs for diagnostic purposes. The objective of this study was to compare the sensitivity of porcine reproductive and respiratory syndrome virus (PRRSV)-RNA detection by reverse transcription quantitative real-time PCR (RT-qPCR) in serum, FTA filter-dried blood and oral fluid sampled from individual pigs. Ten PRRSV negative pigs were injected with an EU-type PRRSV live vaccine. Blood and oral fluid samples were taken from each pig before, and 4, 7, 14 and 21 days after vaccination. All samples were then analyzed by PRRSV RT-qPCR. In serum, eight often pigs tested RT-qPCR positive at different time points post infection. Absolute quantification showed low serum PRRSV-RNA loads in most samples. In comparison to serum, sensitivity of PRRSV-RNA detection was strongly reduced in matched FTA filter-dried blood and in oral fluid from the same pigs. These results indicate that with low PRRSV-RNA loads the diagnostic sensitivity of PRRSV-RNA detection by RT-qPCR achieved with serum is currently unmatched by either FTA filter-dried blood or oral fluid.

Evaluation of different fluids for detection of Clostridium perfringens type D epsilon toxin in sheep with experimental enterotoxemia.

PubMed

Layana, Jorge E; Fernandez Miyakawa, Mariano E; Uzal, Francisco A

2006-08-01

Enterotoxemia caused by Clostridium perfringens type D is a highly lethal disease of sheep, goats and other ruminants. The diagnosis of this condition is usually confirmed by detection of epsilon toxin, a major exotoxin produced by C. perfringens types B and D, in the intestinal content of affected animals. It has been suggested that other body fluids can also be used for detection of epsilon toxin. This study was performed to evaluate the usefulness of intestinal content versus other body fluids in detecting epsilon toxin in cases of sheep enterotoxemia. Samples of duodenal, ileal and colon contents, pericardial and abdominal fluids, aqueous humor and urine from 15 sheep with experimentally induced enterotoxemia, were analysed for epsilon toxin using a capture ELISA. Epsilon toxin was detected in 92% of the samples of ileal content, 64% of the samples of duodenal content, 57% of the samples of colon content and in 7% of the samples of pericardial fluid and aqueous humor. No epsilon toxin was found in samples of abdominal fluid or urine from the animals with enterotoxemia or in any samples from six clinically healthy sheep used as negative controls. The results of this study indicate that with the diagnostic capture ELISA used, intestinal content (preferably ileum) should be used for C. perfringens type D epsilon toxin detection in suspected cases of sheep enterotoxemia.

Carbonate Sediment Deposits on the Reef Front Around Oahu, Hawaii

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hampton, M A.; Blay, Charles T.; Murray, Christopher J.

2004-06-01

Large sediment deposits on the reef front around Oahu are a possible resource for replenishing eroded beaches. High-resolution subbottom profiles clearly depict the deposits in three study areas: Kailua Bay off the windward coast, Makua to Kahe Point off the leeward coast, and Camp Erdman to Waimea off the north coast. Most of the sediment is in water depths between 20 and 100 m, resting on submerged shelves created during lowstands of sea level. The mapped deposits have a volume of about 400 million cubic meters in water depths less than 100 m, being thickest off the mouth of channelsmore » carved into the modern insular shelf, from which most of the sediment issues. Vibracore samples contain various amounts of sediment of similar size to the sand on Oahu beaches, with the most compatible prospects located off Makaha, Haleiwa, and Camp Erdman and the least compatible ones located in Kailua Bay. Laboratory tests show a positive correlation of abrasion with Halimeda content; samples from Kailua Bay suffered high amounts of attrition but others were comparable to tested beach samples.« less

Prevalence of Salmonella among waterfowl along the Texas Gulf coast.

PubMed

Grigar, M K; Cummings, K J; Rankin, S C

2017-12-01

Migratory waterfowl may play a role in the ecology and transmission of zoonotic pathogens, given their ability to travel long distances and their use of varied habitats. Our objectives were to estimate the prevalence of Salmonella among waterfowl along the Texas Gulf coast and to characterize the isolates. Faecal samples were collected from hunter-harvested waterfowl at four wildlife management areas from September through November, 2016. Standard bacteriologic culture methods were used to isolate Salmonella from samples, and isolates were characterized by serotyping and anti-microbial susceptibility testing. The apparent prevalence of faecal Salmonella shedding was 0.5% (2/375). Serotypes identified were Thompson and Braenderup, and both isolates were susceptible to all anti-microbial agents tested. Although faecal contamination of agricultural fields or surface waters could serve as a potential source of zoonotic Salmonella transmission, waterfowl along the Gulf coast during the fall hunting season appear to pose minimal risk. © 2017 Blackwell Verlag GmbH.

Capillary electrophoresis-electrochemical detection microchip device and supporting circuits

DOEpatents

Jackson, Douglas J [New Albany, IN; Roussel, Jr., Thomas J.; Crain, Mark M [Georgetown, IN; Baldwin, Richard P [Louisville, KY; Keynton, Robert S [Louisville, KY; Naber, John F [Prospect, KY; Walsh, Kevin M [Louisville, KY; Edelen, John G [Versailles, KY

2008-03-18

The present invention is a capillary electrophoresis device, comprising a substrate; a first channel in the substrate, and having a buffer arm and a detection arm; a second channel in the substrate intersecting the first channel, and having a sample arm and a waste arm; a buffer reservoir in fluid communication with the buffer arm; a waste reservoir in fluid communication with the waste arm; a sample reservoir in fluid communication with the sample arm; and a detection reservoir in fluid communication with the detection arm. The detection arm and the buffer arm are of substantially equal length.

Methods and compositions for rapid thermal cycling

DOEpatents

Beer, Neil Reginald; Benett, William J.; Frank, James M.; Deotte, Joshua R.; Spadaccini, Christopher

2015-10-27

The rapid thermal cycling of a material is targeted. A microfluidic heat exchanger with an internal porous medium is coupled to tanks containing cold fluid and hot fluid. Fluid flows alternately from the cold tank and the hot tank into the porous medium, cooling and heating samples contained in the microfluidic heat exchanger's sample wells. A valve may be coupled to the tanks and a pump, and switching the position of the valve may switch the source and direction of fluid flowing through the porous medium. A controller may control the switching of valve positions based on the temperature of the samples and determined temperature thresholds. A sample tray for containing samples to be thermally cycled may be used in conjunction with the thermal cycling system. A surface or internal electrical heater may aid in heating the samples, or may replace the necessity for the hot tank.

Methods and compositions for rapid thermal cycling

DOE Office of Scientific and Technical Information (OSTI.GOV)

Beer, Neil Reginald; Benett, William J.; Frank, James M.

The rapid thermal cycling of a material is targeted. A microfluidic heat exchanger with an internal porous medium is coupled to tanks containing cold fluid and hot fluid. Fluid flows alternately from the cold tank and the hot tank into the porous medium, cooling and heating samples contained in the microfluidic heat exchanger's sample wells. A valve may be coupled to the tanks and a pump, and switching the position of the valve may switch the source and direction of fluid flowing through the porous medium. A controller may control the switching of valve positions based on the temperature ofmore » the samples and determined temperature thresholds. A sample tray for containing samples to be thermally cycled may be used in conjunction with the thermal cycling system. A surface or internal electrical heater may aid in heating the samples, or may replace the necessity for the hot tank.« less

Validation and Comparison of Two Sampling Methods to Assess Dermal Exposure to Drilling Fluids and Crude Oil

PubMed Central

Galea, Karen S.; McGonagle, Carolyn; Sleeuwenhoek, Anne; Todd, David; Jiménez, Araceli Sánchez

2014-01-01

Dermal exposure to drilling fluids and crude oil is an exposure route of concern. However, there have been no published studies describing sampling methods or reporting dermal exposure measurements. We describe a study that aimed to evaluate a wipe sampling method to assess dermal exposure to an oil-based drilling fluid and crude oil, as well as to investigate the feasibility of using an interception cotton glove sampler for exposure on the hands/wrists. A direct comparison of the wipe and interception methods was also completed using pigs’ trotters as a surrogate for human skin and a direct surface contact exposure scenario. Overall, acceptable recovery and sampling efficiencies were reported for both methods, and both methods had satisfactory storage stability at 1 and 7 days, although there appeared to be some loss over 14 days. The methods’ comparison study revealed significantly higher removal of both fluids from the metal surface with the glove samples compared with the wipe samples (on average 2.5 times higher). Both evaluated sampling methods were found to be suitable for assessing dermal exposure to oil-based drilling fluids and crude oil; however, the comparison study clearly illustrates that glove samplers may overestimate the amount of fluid transferred to the skin. Further comparison of the two dermal sampling methods using additional exposure situations such as immersion or deposition, as well as a field evaluation, is warranted to confirm their appropriateness and suitability in the working environment. PMID:24598941

Effects of fluid-rock interactions on faulting within active fault zones - evidence from fault rock samples retrieved from international drilling projects

NASA Astrophysics Data System (ADS)

Janssen, C.; Wirth, R.; Kienast, M.; Yabe, Y.; Sulem, J.; Dresen, G. H.

2015-12-01

Chemical and mechanical effects of fluids influence the fault mechanical behavior. We analyzed fresh fault rocks from several scientific drilling projects to study the effects of fluids on fault strength. For example, in drill core samples on a rupture plane of an Mw 2.2 earthquake in a deep gold mine in South Africa the main shock occurred on a preexisting plane of weakness that was formed by fluid-rock interaction (magnesiohornblende was intensively altered to chlinochlore). The plane acted as conduit for hydrothermal fluids at some time in the past. The chemical influence of fluids on mineralogical alteration and geomechanical processes in fault core samples from SAFOD (San Andreas Fault Observatory at Depth) is visible in pronounced dissolution-precipitation processes (stylolites, solution seams) as well as in the formation of new phases. Detrital quartz and feldspar grains are partially dissolved and replaced by authigenic illite-smectite (I-S) mixed-layer clay minerals. Transmission Electron Microscopy (TEM) imaging of these grains reveals that the alteration processes and healing were initiated within pores and small intra-grain fissures. Newly formed phyllosilicates growing into open pore spaces likely reduced the fluid permeability. The mechanical influence of fluids is indicated by TEM observations, which document open pores that formed in-situ in the gouge material during or after deformation. Pores were possibly filled with formation water and/or hydrothermal fluids suggesting elevated fluid pressure preventing pore collapse. Fluid-driven healing of fractures in samples from SAFOD and the DGLab Gulf of Corinth project is visible in cementation. Cathodoluminescence microscopy (CL) reveals different generations of calcite veins. Differences in CL-colors suggest repeated infiltration of fluids with different chemical composition from varying sources (formation and meteoric water).

CTP (Cochlin-tomoprotein) detection in the profuse fluid leakage (gusher) from cochleostomy.

PubMed

Ikezono, Tetsuo; Sugizaki, Kazuki; Shindo, Susumu; Sekiguchi, Satomi; Pawankar, Ruby; Baba, Shunkichi; Yagi, Toshiaki

2010-08-01

By testing 125 samples, we confirmed that Cochlin-tomoprotein (CTP) is present in the perilymph, not in cerebrospinal fluid (CSF). Perilymph and CSF exist in two distinct compartments, even in the case of a malformed inner ear with a bony defect in the lamina cribrosa, as described here. Cochleostomy might have suddenly decreased the perilymph pressure, allowing the influx of CSF into the inner ear resulting in profuse fluid leakage, first perilymph then CSF. The first purpose of this study was to further confirm the specificity of the perilymph-specific protein CTP that we reported recently. Secondly, we assessed the nature of the fluid leakage from the cochleostomy using the CTP detection test. A standardized CTP detection test was performed on 65 perilymph and 60 CSF samples. Samples of profuse fluid leakage collected from cochleostomy during cochlear implantation surgery of one patient with branchio-oto-renal (BOR) syndrome were also tested by the CTP detection test. CTP was detected in 60 of 65 perilymph samples but not in any of the CSF samples. The leaked fluid was shown to contain CTP, i.e. perilymph, at the outset, and then the CTP detection signals gradually disappeared as time elapsed.

Lysimeter apparatus

DOEpatents

Clark, Don T.; Erickson, Eugene E.; Casper, William L.; Everett, David M.; Hubbell, Joel M.; Sisson, James B.

2005-09-06

A suction lysimeter for sampling subsurface liquids includes a lysimeter casing having a drive portion, a reservoir portion, and a tip portion, the tip portion including a membrane through which subsurface liquids may be sampled; a fluid conduit coupled in fluid flowing relation relative to the membrane, and which in operation facilitates the delivery of the sampled subsurface liquids from the membrane to the reservoir portion; and a plurality of tubes coupled in fluid flowing relation relative to the reservoir portion, the tubes in operation facilitating delivery of the sampled subsurface liquids from the reservoir portion for testing. A method of sampling subsurface liquids comprises using this lysimeter.

Supercritical fluid extraction and direct fluid injection mass spectrometry for the determination of trichothecene mycotoxins in wheat samples

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kalinoski, H.T.; Udseth, H.R.; Wright, B.W.

1986-10-01

The application of on-line supercritical fluid extraction with chemical ionization mass spectrometry and collision induced dissociation tandem mass spectrometry for the rapid identification of parts-per-million levels of several trichothecene mycotoxins is demonstrated. Supercritical carbon dioxide is shown to allow identification of mycotoxins with minimum sample handling in complex natural matrices (e.g., wheat). Tandem mass spectrometry techniques are employed for unambiguous identification of compounds of varying polarity, and false positives from isobaric compounds are avoided. Capillary column supercritical fluid chromatography-mass spectrometry of a supercritical fluid extract of the same sample was also performed and detection limits in the parts-per-billion range appearmore » feasible.« less

Determination of 137Cs and 60Co pollution in the area of the Laguna Verde Nuclear Power Plant, Mexico.

PubMed

Salas Mar, Bernardo

2015-11-01

The project 'Radiological Analysis of Environmental Samples in the Gulf of Mexico and the coast of Quintana Roo', had the aim of identifying and quantifying anthropogenic radionuclides in environmental samples consisting of silt, sand and sea water. This paper presents the results of the radiological analysis of these samples, which was made in the multichannel system for gamma spectrometry with hyperpure germanium detector in the Laboratory of Radiological Analysis of Environmental Samples, located at the Physics Department, Faculty of Sciences, of the Autonomous National University of Mexico (UNAM). The sampled points are along the coast of the contiguous states of Tamaulipas, Veracruz, Tabasco, Campeche, Yucatan and Quintana Roo. This paper presents the qualitative and quantitative concentrations of the main identified anthropogenic radionuclides (60)Co and (137)Cs. © The Author 2015. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Biochemical composition of fluids for amnioinfusion during fetoscopy.

PubMed

Adama van Scheltema, P N; In't Anker, P S; Vereecken, A; Vandenbussche, F P H A; Deprest, J A; Devlieger, R

2008-01-01

To evaluate which of the commercially available solutions is best suited for amnioinfusion during fetoscopy, based on resemblance with the biochemical properties of amniotic fluid. Amniotic fluid samples from 10 pregnancies were studied. Specimens were obtained from 5 pathologic pregnancies (of which 3 were complicated by polyhydramnios) and 5 uncomplicated pregnancies. The concentrations of sodium, potassium, chloride, bicarbonate, calcium, glucose, osmolality, pH, total protein content and albumin were determined in each sample. A literature search (PubMed, Embase) was performed to identify commercially available fluids used for amnioinfusion in clinical practice. The composition of these infusion solutions was compared to the amniotic fluid samples mentioned above. We identified two different electrolyte solutions used in clinical practice for amnioinfusion. We identified four additional commercially available solutions that could potentially be used for amnioinfusion. Most of these infusion solutions differ considerably from midtrimester amniotic fluid samples both in electrolyte composition and pH, with the most striking difference in the latter. Lactated Ringer's solution approximates amniotic fluid the closest for both electrolyte composition and pH. This infusion solution seems to be the most suitable choice for amnioinfusion during fetoscopy. (c) 2008 S. Karger AG, Basel.

Massive sulfide metallogenesis at a late Mesozoic sediment-covered spreading axis: Evidence from the Franciscan complex and contemporary analogues

USGS Publications Warehouse

Koski, Randolph A.; Lamons, Roberta C.; Dumoulin, Julie A.; Bouse, Robin M.

1993-01-01

The Island Mountain deposit, an anomalous massive sulfide in the Central belt of the Franciscan subduction complex, northern California Coast Ranges, formed during hydrothermal activity in a sediment-dominated paleo-sea-floor environment. Although the base of the massive sulfide is juxtaposed against a 500-m-wide melange band, its gradational upper contact within a coherent sequence of sandstone, siltstone, and mudstone indicates that hydrothermal activity was concurrent with turbidite deposition. Accumulations of sulfide breccia and clastic sulfide were produced by mass wasting of the sulfide mound prior to burial by turbidites. The bulk composition of sulfide samples (pyrrhotite rich; high Cu, As, and Au contents; radiogenic Pb isotope ratios) is consistent with a hydrothermal system dominated by fluid-sediment interaction. On the basis of a comparison with possible contemporary tectonic analogues at the southern Gorda Ridge and the Chile margin triple junction, we propose that massive sulfide mineralization in the Central belt of the Franciscan complex resulted from hydrothermal activity at a late Mesozoic sediment-covered ridge axis prior to collision with the North American plate.

Massive sulfide metallogenesis at a late Mesozoic sediment-covered spreading axis: Evidence from the Franciscan complex and contemporary analogues

NASA Astrophysics Data System (ADS)

Koski, Randolph A.; Lamons, Roberta C.; Dumoulin, Julie A.; Bouse, Robin M.

1993-02-01

The Island Mountain deposit, an anomalous massive sulfide in the Central belt of the Franciscan subduction complex, northern California Coast Ranges, formed during hydrothermal activity in a sediment-dominated paleo-sea-floor environment. Although the base of the massive sulfide is juxtaposed against a 500-m-wide melange band, its gradational upper contact within a coherent sequence of sandstone, siltstone, and mudstone indicates that hydrothermal activity was concurrent with turbidite deposition. Accumulations of sulfide breccia and clastic sulfide were produced by mass wasting of the sulfide mound prior to burial by turbidites. The bulk composition of sulfide samples (pyrrhotite rich; high Cu, As, and Au contents; radiogenic Pb isotope ratios) is consistent with a hydrothermal system dominated by fluid-sediment interaction. On the basis of a comparison with possible contemporary tectonic analogues at the southern Gorda Ridge and the Chile margin triple junction, we propose that massive sulfide mineralization in the Central belt of the Franciscan complex resulted from hydrothermal activity at a late Mesozoic sediment-covered ridge axis prior to collision with the North American plate.

Gas-water-rock interactions in sedimentary basins: CO2 sequestration in the Frio Formation, Texas, USA

USGS Publications Warehouse

Kharaka, Y.K.; Cole, D.R.; Thordsen, J.J.; Kakouros, E.; Nance, H.S.

2006-01-01

To investigate the potential for the geologic storage of CO2 in saline sedimentary aquifers, 1600??ton of CO2 were injected at ???1500 m depth into a 24-m sandstone section of the Frio Formation - a regional reservoir in the US Gulf Coast. Fluid samples obtained from the injection and observation wells before, during and after CO2 injection show a Na-Ca-Cl type brine with 93,000??mg/L TDS and near saturation of CH4 at reservoir conditions. As injected CO2 gas reached the observation well, results showed sharp drops in pH (6.5 to 5.7), pronounced increases in alkalinity (100 to 3000??mg/L as HCO3) and Fe (30 to 1100??mg/L), and significant shifts in the isotopic compositions of H2O and DIC. Geochemical modeling indicates that brine pH would have dropped lower, but for buffering by dissolution of calcite and Fe oxyhydroxides. Post-injection results show the brine gradually returning to its pre-injection composition. ?? 2006 Elsevier B.V. All rights reserved.

Preparation and electrical properties of oil-based magnetic fluids

NASA Astrophysics Data System (ADS)

Sartoratto, P. P. C.; Neto, A. V. S.; Lima, E. C. D.; Rodrigues de Sá, A. L. C.; Morais, P. C.

2005-05-01

This paper describes an improvement in the preparation of magnetic fluids for electrical transformers. The samples are based on surface-coated maghemite nanoparticles dispersed in transformer insulating oil. Colloidal stability at 90°C was higher for oleate-grafted maghemite-based magnetic fluid, whereas decanoate and dodecanoate-grafted samples were very unstable. Electrical properties were evaluated for samples containing 0.80%-0.0040% maghemite volume fractions. Relative permittivity varied from 8.8 to 2.1 and the minimum value of the loss factor was 12% for the most diluted sample. The resistivity falls in the range of 0.7-2.5×1010Ωm, whereas the ac dielectric strength varied from 70to79kV. These physical characteristics reveal remarkable step forward in the properties of the magnetic fluid samples and may result in better operation of electrical transformers.

Metabolic profiling of body fluids and multivariate data analysis.

PubMed

Trezzi, Jean-Pierre; Jäger, Christian; Galozzi, Sara; Barkovits, Katalin; Marcus, Katrin; Mollenhauer, Brit; Hiller, Karsten

2017-01-01

Metabolome analyses of body fluids are challenging due pre-analytical variations, such as pre-processing delay and temperature, and constant dynamical changes of biochemical processes within the samples. Therefore, proper sample handling starting from the time of collection up to the analysis is crucial to obtain high quality samples and reproducible results. A metabolomics analysis is divided into 4 main steps: 1) Sample collection, 2) Metabolite extraction, 3) Data acquisition and 4) Data analysis. Here, we describe a protocol for gas chromatography coupled to mass spectrometry (GC-MS) based metabolic analysis for biological matrices, especially body fluids. This protocol can be applied on blood serum/plasma, saliva and cerebrospinal fluid (CSF) samples of humans and other vertebrates. It covers sample collection, sample pre-processing, metabolite extraction, GC-MS measurement and guidelines for the subsequent data analysis. Advantages of this protocol include: •Robust and reproducible metabolomics results, taking into account pre-analytical variations that may occur during the sampling process•Small sample volume required•Rapid and cost-effective processing of biological samples•Logistic regression based determination of biomarker signatures for in-depth data analysis.

Passive injection control for microfluidic systems

DOEpatents

Paul, Phillip H.; Arnold, Don W.; Neyer, David W.

2004-12-21

Apparatus for eliminating siphoning, "dead" regions, and fluid concentration gradients in microscale analytical devices. In its most basic embodiment, the present invention affords passive injection control for both electric field-driven and pressure-driven systems by providing additional fluid flow channels or auxiliary channels disposed on either side of a sample separation column. The auxiliary channels are sized such that volumetric fluid flow rate through these channels, while sufficient to move the sample away from the sample injection region in a timely fashion, is less than that through the sample separation channel or chromatograph.

Portable Medical Diagnosis Instrument

NASA Technical Reports Server (NTRS)

Coleman, Matthew A. (Inventor); Straume, Tore (Inventor); Loftus, David J. (Inventor); Li, Jing (Inventor); Singh, Anup K. (Inventor); Davis, Cristina E. (Inventor)

2017-01-01

A system that integrates several technologies into a single, portable medical diagnostic apparatus for analyzing a sample body fluid (liquid and/or gas): (1) a mechanism to capture airborne microdroplets and to separate the body fluid into a first fluid component (primarily gas) and a second fluid component (primarily liquid); (2) a volatilizer to convert a portion of the second fluid component into a third fluid component that is primarily a gas; (3) a functionalized nanostructure (NS) array configured to receive, identify, and estimate concentration of at least one constituent in the first and/or third fluid components; (4) a miniaturized differential mobility spectrometer (DMS) module; and (5) a biomarker sensor, to detect volatile and non-volatile molecules in a sample fluid, which may contain one or more components of blood, breath, perspiration, saliva, and urine.

Well purge and sample apparatus and method

DOEpatents

Schalla, Ronald; Smith, Ronald M.; Hall, Stephen H.; Smart, John E.; Gustafson, Gregg S.

1995-01-01

The present invention specifically permits purging and/or sampling of a well but only removing, at most, about 25% of the fluid volume compared to conventional methods and, at a minimum, removing none of the fluid volume from the well. The invention is an isolation assembly with a packer, pump and exhaust, that is inserted into the well. The isolation assembly is designed so that only a volume of fluid between the outside diameter of the isolation assembly and the inside diameter of the well over a fluid column height from the bottom of the well to the top of the active portion (lower annulus) is removed. The packer is positioned above the active portion thereby sealing the well and preventing any mixing or contamination of inlet fluid with fluid above the packer. Ports in the wall of the isolation assembly permit purging and sampling of the lower annulus along the height of the active portion.

Well purge and sample apparatus and method

DOEpatents

Schalla, R.; Smith, R.M.; Hall, S.H.; Smart, J.E.; Gustafson, G.S.

1995-10-24

The present invention specifically permits purging and/or sampling of a well but only removing, at most, about 25% of the fluid volume compared to conventional methods and, at a minimum, removing none of the fluid volume from the well. The invention is an isolation assembly with a packer, pump and exhaust, that is inserted into the well. The isolation assembly is designed so that only a volume of fluid between the outside diameter of the isolation assembly and the inside diameter of the well over a fluid column height from the bottom of the well to the top of the active portion (lower annulus) is removed. The packer is positioned above the active portion thereby sealing the well and preventing any mixing or contamination of inlet fluid with fluid above the packer. Ports in the wall of the isolation assembly permit purging and sampling of the lower annulus along the height of the active portion. 8 figs.

Optical analysis of suspended particles in the cerebrospinal fluid obtained by puncture from patients diagnosed with the disorders of cerebrospinal fluid (CSF) circulation

NASA Astrophysics Data System (ADS)

Staroń, Waldemar; Herbowski, Leszek; Gurgul, Henryk

2007-04-01

The goal of the work was to determine the values of cumulative parameters of the cerebrospinal fluid. Values of the parameters characterise statistical cerebrospinal fluid obtained by puncture from the patients diagnosed due to suspicion of normotensive hydrocephalus. The cerebrospinal fluid taken by puncture for the routine examinations carried out at the patients suspected of normotensive hydrocephalus was analysed. In the paper there are presented results of examinations of several dozens of puncture samples of the cerebrospinal fluid coming from various patients. Each sample was examined under the microscope and photographed in 20 randomly chosen places. On the basis of analysis of the pictures showing the area of 100 x 100μm, the selected cumulative parameters such as count, numerical density, field area and field perimeter were determined for each sample. Then the average value of the parameters was determined as well.

Avifauna associated with early growth vegetation on clearcuts in the Oregon coast ranges.

Treesearch

Michael L. Morrison; E. Charles Meslow

1983-01-01

This paper provides estimates of bird density, diversity, and evenness on 13 clearcut units of the Siuslaw National Forest in the Coast Ranges of Oregon, sampled during 1979,1980, and 1981. Total density of nesting birds ranged from 322 to 588 per 40.5 hectares (100 acres); there were 15 to 19 species nesting on each site.

Timber resource statistics for the North Coast resource area of California 1994.

Treesearch

Karen L. Waddell; Patricia M. Bassett

1996-01-01

This report is a summary of timber resource statistics for the North Coast Resource Area of California, which includes Del Norte, Humboldt, Mendocino, and Sonoma Counties. Data were collected by the Pacific Northwest Research Station as part of a State-wide multi-resource inventory. The inventory sampled private and public lands except reserved areas and National...

Challenges Pre-School Teachers Face in the Implementation of the Early Childhood Curriculum in the Cape Coast Metropolis

ERIC Educational Resources Information Center

Ntumi, Simon

2016-01-01

The study examined the challenges that pre-school teachers encounter in the implementation of the early childhood curriculum; exploring teaching methods employed by pre-schools teachers in the Cape Coast Metropolis. The study employed descriptive survey as the research design. A convenient sample of 62 pre-school teachers were selected from a…

Diversity of pulsed field gel electrophoresis pulsotypes, serovars and antibiotic resistance among Salmonella isolates from wild amphibians and reptiles in the California central coast

USDA-ARS?s Scientific Manuscript database

A survey of cold-blooded vertebrates and associated surface waters in a produce-growing region on the Central California Coast was done between May and September, 2011 to determine the diversity of Salmonella strains in these habitats and individuals. Samples from 460 amphibians and reptiles and 119...

'Pygmy' old-growth redwood characteristics on an edaphic ecotone in Mendocino County, California

Treesearch

Will Russell; Suzie. Woolhouse

2012-01-01

The 'pygmy forest' is a specialized community that is adapted to highly acidic, hydrophobic, nutrient deprived soils, and exists in pockets within the coast redwood forest in Mendocino County. While coast redwood is known as an exceptionally tall tree, stunted trees exhibit unusual growth-forms on pygmy soils. We used a stratified random sampling procedure to...

Self-filling and self-purging apparatus for detecting spontaneous radiation from substances in fluids

DOEpatents

Larson, I. Lauren; Chiles, Marion M.; Miller, V. Clint

1993-01-01

Disclosed herein is a radiation detector providing for the in situ automatic sampling of fluids containing substances emitting radiation, especially Cerenkov radiation. The detector permits sampling within well casings and is self-purging such that no additional provisions must be established for the storage and disposal of contaminated fluids.

Clinical utility of capillary polymerase chain reaction for diagnosis of Cytomegalovirus pneumonia.

PubMed

Honda, J; Yonemitsu, J; Kitajima, H; Yosida, N; Fumirori, T; Oizumi, K

2001-01-01

The purpose of this retrospective study was to assess the diagnostic efficacy of CMV DNA detection by capillary PCR in patients with interstitial pneumonia. Of 882 samples taken from 363 patients, 317 were obtained from sputum, 94 from BAL fluid, 291 from blood and 180 from urine. PCR for CMV was positive in 58 samples (6.6%), with positive detection for 6.9% of sputum, 10.6% of BAL fluid, 4.1% of blood and 7.8% of urine samples. CMV pneumonia was diagnosed retrospectively in 34 (9.4%) of the 363 patients by demonstration of CMV antigen-positive cytomegalic inclusion bodies in lung tissue sections. The positive and negative predictive values were 100% (10/10) and 98.8% (83/84) for the BAL fluid samples and 95.5% (21/22) and 99.7% (294/295) for the sputum samples, respectively. Clinical sensitivity and specificity were 90.9% (10/11) and 100% (83/83) for the BAL fluid samples and 95.5% (21/22) and 99.7% (294/295) for the sputum samples, respectively. However, the blood and urine samples showed poor clinical sensitivity and low positive predictive values. We suggest that the use of capillary PCR for BAL fluid and sputum samples is very useful for diagnosing CMV pneumonia in patients with interstitial pneumonia in whom CMV pneumonia is suspected.

Splay fault branching from the Hikurangi subduction shear zone: Implications for slow slip and fluid flow

NASA Astrophysics Data System (ADS)

Plaza-Faverola, A.; Henrys, S.; Pecher, I.; Wallace, L.; Klaeschen, D.

2016-12-01

Prestack depth migration data across the Hikurangi margin, East Coast of the North Island, New Zealand, are used to derive subducting slab geometry, upper crustal structure, and seismic velocities resolved to ˜14 km depth. We investigate the potential relationship between the crustal architecture, fluid migration, and short-term geodetically determined slow slip events. The subduction interface is a shallow dipping thrust at <7 km depth near the trench and steps down to 14 km depth along an ˜18 km long ramp, beneath Porangahau Ridge. This apparent step in the décollement is associated with splay fault branching and coincides with a zone of maximum slip (90 mm) inferred on the subduction interface during slow slip events in June and July 2011. A low-velocity zone beneath the plate interface, updip of the plate interface ramp, is interpreted as fluid-rich overpressured sediments capped with a low permeability condensed layer of chalk and interbedded mudstones. Fluid-rich sediments have been imbricated by splay faults in a region that coincides with the step down in the décollement from the top of subducting sediments to the oceanic crust and contribute to spatial variation in frictional properties of the plate interface that may promote slow slip behavior in the region. Further, transient fluid migration along splay faults at Porangahau Ridge may signify stress changes during slow slip.

Potential ballast water transfer of organisms from the west to the east coast of India: Insights through on board sampling

NASA Astrophysics Data System (ADS)

Desai, Dattesh V.; Narale, Dhiraj; Khandeparker, Lidita; Anil, Arga Chandrashekar

2018-03-01

The possibility of translocation of organisms via ship's ballast water (BW) during a voyage from Hazira on the west coast to Visakhapatnam on the east coast of India was assessed. Samples of BW during the voyage and discharge and sediment collected subsequent to discharge of BW were collected and analyzed for different abiotic and biotic components. It was observed that the salinity did not change, whereas temperature and pH of BW increased marginally during the voyage. A marginal increase in the dissolved oxygen is observed during rough-very rough sea conditions. A sharp decline in the phytoplankton and zooplankton abundance observed in the initial ballast tank sample compared to natural seawater indicates the impact of ballast water pumping on the plankton community. Changes in the sea state during the voyage (slight-moderate to rough-very rough) resulted in a higher sediment suspension rate and suspended particulate matter and this coincided with higher bacterial abundance followed by increase in phytoplankton. An increase in the phytoplankton abundance in the discharge water could be attributed to the inoculum from the sediment. The abundance of zooplankton decreased from the start till the end of the voyage, with high numbers of dead zooplankton in the discharge sample.

Sub-seafloor Processes and the Composition of Diffuse Hydrothermal Fluids

NASA Astrophysics Data System (ADS)

Butterfield, D. A.; Lilley, M. D.; Huber, J. A.; Baross, J. A.

2002-12-01

High-temperature water/rock reactions create the primary hydrothermal fluids that are diluted with cool, "crustal seawater" to produce low-temperature, diffuse hydrothermal vent fluids. By knowing the composition of each of the components that combine to produce diffuse fluids, one can compare the composition of calculated mixtures with the composition of sampled fluids, and thereby infer what chemical constituents have been affected by processes other than simple conservative mixing. Although there is always uncertainty in the composition of fluids from the sub-seafloor, some processes are significant enough to alter diffuse fluid compositions from the expected conservative mixtures of hot,primary fluid and "crustal seawater." When hydrothermal vents with a wide range of temperature are sampled, processes occurring in different thermal and chemical environments potentially can be discerned. At Axial Volcano (AV) on the Juan de Fuca ridge, methane clearly is produced in warm sub-seafloor environments at temperatures of ~ 100° or less. Based on culturing and phylogenetic analysis from the same water samples at AV, hyperthermophilic methanogens are present in water samples taken from vents ranging in temperature from 15 to 78° C. Ratios of hydrogen sulfide to pseudo-conservative tracers (dissolved silica or heat) at AV decrease when primary fluids are highly diluted with oxygenated seawater. Phylogenetic signatures of microbes closely related to sulfide-oxidizers are present in these same fluids. Hydrogen sulfide oxidation represents the dominant source of energy for chemosynthesis at AV, as in most hydrothermal systems, but a relatively small proportion of the total hydrogen sulfide available is actually oxidized, except at the very lowest temperatures.

Understanding Copper Isotope Behavior in the High Temperature Magmatic-Hydrothermal Porphyry Environment

NASA Astrophysics Data System (ADS)

Gregory, Melissa J.; Mathur, Ryan

2017-11-01

Copper stable isotope geochemistry has the potential to constrain aspects of ore deposit formation once variations in the isotopic data can be related to the physiochemical conditions during metal deposition. This study presents Cu isotope ratios for samples from the Pebble porphyry Cu-Au-Mo deposit in Alaska. The δ65Cu values for hypogene copper sulfides range from -2.09‰ to 1.11‰ and show linear correlations with the δ18O isotope ratios calculated for the fluid in equilibrium with the hydrothermal alteration minerals in each sample. Samples with sodic-potassic, potassic, and illite alteration display a negative linear correlation between the Cu and O isotope results. This suggests that fractionation of Cu isotopes between the fluid and precipitating chalcopyrite is positive as the hydrothermal fluid is evolving from magmatic to mixed magmatic-meteoric compositions. Samples with advanced argillic alteration display a weak positive linear correlation between Cu and O isotope results consistent with small negative fluid-chalcopyrite Cu isotope fractionation during fluid evolution. The hydrothermal fluids that formed sodic-potassic, potassic, and illite alteration likely transported Cu as CuHS0. Hydrothermal fluids that resulted in advanced argillic alteration likely transport Cu as CuCl2-. The pH conditions also control Cu isotope fractionation, consistent with previous experimental work. Larger fractionation factors were found between fluids and chalcopyrite precipitating under neutral conditions contrasting with small fractionation factors calculated between fluids and chalcopyrite precipitating under acidic conditions. Therefore, this study proposes that hydrothermal fluid compositions and pH conditions are related to Cu isotope variations in high temperature magmatic-hydrothermal deposits.

Development and field application of a 6-bottle serial gas-tight fluid sampler for collecting seafloor cold seep and hydrothermal vent fluids with autonomous operation capability

NASA Astrophysics Data System (ADS)

Wu, S.; Ding, K.; Yang, C.; Seyfried, W. E., Jr.; Tan, C.; Schaen, A. T.; Luhmann, A. J.

2014-12-01

A 6-bottle serial gas-tight sampler (so-called "six-shooter") was developed for application with deep-sea vent fluids. The new device is composed of a custom-made 6-channel valve manifold and six sampling bottles which are circularly distributed around the valve manifold. Each valve channel consists of a high-pressure titanium cartridge valve and a motor-driven actuator. A sampling snorkel is connected to the inlet of the manifold that delivers the incoming fluid to different bottles. Each sampling bottle has a 160 ml-volume chamber and an accumulator chamber inside where compressed nitrogen is used to maintain the sample at near in-situ pressure. An electronics chamber that is located at the center of the sampler is used to carry out all sampling operations, autonomously, if desired. The sampler is of a compact circular configuration with a diameter of 26 cm and a length of 54 cm. During the SVC cruise AT 26-12, the sampler was deployed by DSV2 Alvin at a cold seep site MC036 with a depth of 1090 m in the Gulf of Mexico. The sampler collected fluid samples automatically following the tidal cycle to monitor the potential impact of the tide cycle on the fluid chemistry of cold seep in a period of two day. During the cruise AT 26-17, the sampler was used with newly upgraded DSV2 Alvin three times at the hydrothermal vent sites along Axial Seamount and Main Endeavor Field on Juan de Fuca Ridge. During a 4-day deployment at Anemone diffuse site (Axial Caldera), the sampler was set to work in an autonomous mode to collect fluid samples according to the preset interval. During other dives, the sampler was manually controlled via ICL (Inductively Coupled Link) communication through the hull. Gas-tight fluid samples were collected from different hydrothermal vents with temperatures between 267 ℃ and 335 ℃ at the depth up to 2200 m. The field results indicate unique advantages of the design. It can be deployed in extended time period with remote operation or working autonomously taking gas-tight fluid samples. If used with HOV or ROV, it will reduce basket space occupation and ICL communication cables compared to traditional single-bottle gas-tight samplers. This time serial gas-tight fluid sampler will be further developed into a 36 bottle system for remote operation with seafloor cabled observatory.

Development of Proxies for Vent Fluid Trace Metal Concentrations and pH through Study of Sulfide Chimney Linings

NASA Astrophysics Data System (ADS)

Evans, G. N.; Tivey, M. K.; Seewald, J.; Rouxel, O. J.; Monteleone, B.

2016-12-01

Analyses of trace elements (Ag, As, Co, Mn, and Zn) hosted in the chalcopyrite linings of `black smoker' chimneys using secondary ion mass spectrometry (SIMS) have been combined with data for trace metal concentrations in corresponding vent fluids to investigate fluid-mineral partitioning of trace elements. Goals of this research include development of proxies for fluid chemistry based on mineral trace element content. The use of SIMS allows for the measurement of trace elements below the detection limits of electron microprobe and at the necessary spatial resolution (20 microns) to examine fine-grained and mixed-mineral samples. Results indicate that the chalcopyrite linings of many `black smoker' chimneys are homogeneous with respect to Ag, Mn, Co, and Zn. Minerals picked from samples exhibiting homogeneity with respect to specific elements were dissolved and analyzed by solution inductively coupled plasma mass spectrometry (ICP-MS) for use as working standards. Results also document a strong correlation between the Ag content of chalcopyrite and the Ag:Cu ratio of the corresponding hydrothermal fluid. This supports systematic partitioning of Ag into chalcopyrite as a substitute for Cu, providing a proxy for fluid Ag concentration. Additionally, the Ag content of chalcopyrite correlates with fluid pH, particularly at pH>3, and thus represents an effective proxy for fluid pH. Application of these proxies to chimney samples provides an opportunity to better identify hydrothermal conditions even when fluids have not been sampled, or not fully analyzed.

Messenger RNA biomarker signatures for forensic body fluid identification revealed by targeted RNA sequencing.

PubMed

Hanson, E; Ingold, S; Haas, C; Ballantyne, J

2018-05-01

The recovery of a DNA profile from the perpetrator or victim in criminal investigations can provide valuable 'source level' information for investigators. However, a DNA profile does not reveal the circumstances by which biological material was transferred. Some contextual information can be obtained by a determination of the tissue or fluid source of origin of the biological material as it is potentially indicative of some behavioral activity on behalf of the individual that resulted in its transfer from the body. Here, we sought to improve upon established RNA based methods for body fluid identification by developing a targeted multiplexed next generation mRNA sequencing assay comprising a panel of approximately equal sized gene amplicons. The multiplexed biomarker panel includes several highly specific gene targets with the necessary specificity to definitively identify most forensically relevant biological fluids and tissues (blood, semen, saliva, vaginal secretions, menstrual blood and skin). In developing the biomarker panel we evaluated 66 gene targets, with a progressive iteration of testing target combinations that exhibited optimal sensitivity and specificity using a training set of forensically relevant body fluid samples. The current assay comprises 33 targets: 6 blood, 6 semen, 6 saliva, 4 vaginal secretions, 5 menstrual blood and 6 skin markers. We demonstrate the sensitivity and specificity of the assay and the ability to identify body fluids in single source and admixed stains. A 16 sample blind test was carried out by one lab with samples provided by the other participating lab. The blinded lab correctly identified the body fluids present in 15 of the samples with the major component identified in the 16th. Various classification methods are being investigated to permit inference of the body fluid/tissue in dried physiological stains. These include the percentage of reads in a sample that are due to each of the 6 tissues/body fluids tested and inter-sample differential gene expression revealed by agglomerative hierarchical clustering. Copyright © 2018 Elsevier B.V. All rights reserved.

Optimization of Machining Parameters of Milling Operation by Application of Semi-synthetic oil based Nano cutting Fluids

NASA Astrophysics Data System (ADS)

Giri Prasad, M. J.; Abhishek Raaj, A. S.; Rishi Kumar, R.; Gladson, Frank; M, Gautham

2016-09-01

The present study is concerned with resolving the problems pertaining to the conventional cutting fluids. Two samples of nano cutting fluids were prepared by dispersing 0.01 vol% of MWCNTs and a mixture of 0.01 vol% of MWCNTs and 0.01 vol% of nano ZnO in the soluble oil. The thermophysical properties such as the kinematic viscosity, density, flash point and the tribological properties of the prepared nano cutting fluid samples were experimentally investigated and were compared with those of plain soluble oil. In addition to this, a milling process was carried by varying the process parameters and by application of different samples of cutting fluids and an attempt was made to determine optimal cutting condition using the Taguchi optimization technique.

Graphene nanoplatelets as high-performance filtration control material in water-based drilling fluids

NASA Astrophysics Data System (ADS)

Ridha, Syahrir; Ibrahim, Arif; Shahari, Radzi; Fonna, Syarizal

2018-05-01

The main objective of this work is to evaluate the effectiveness of graphene nanoplatelets (GNP) as filtration control materials in water based drilling fluids. Three (3) general samples of water based drilling fluids were prepared including basic potassium chloride (KCl) drilling fluids, nanosilica (NS) drilling fluids and GNP drilling fluids. Several concentrations of NS and GNP were dispersed in controlled formulations of water based drilling fluids. Standard API filtration tests were carried out for comparison purposes as well as High Temperature High Pressure (HTHP) filtration tests at 150 °F (∼66 °C), 250 °F (∼121 °C) and 350 °F (∼177 °C) at a fixed 500 (∼3.45MPa) psi to study the filtration trend as a function of temperature. Mud cake samples from several tests were selectively chosen and analyzed under Field Emission Scanning Electron Microscope (FESEM) for its morphology. Results from this work show that nanoparticle concentrations play a factor in filtration ability of colloid materials in water based drilling fluids when studied at elevated temperature. Low temperature filtration, however, shows only small differences in volume in all the drilling fluid samples. 0.1 ppb concentrations of GNP reduced the fluid loss of 350 °F by 4.6 mL as compared to the similar concentration of NS drilling fluids.

Microfluidic method for measuring viscosity using images from smartphone

NASA Astrophysics Data System (ADS)

Kim, Sooyeong; Kim, Kyung Chun; Yeom, Eunseop

2018-05-01

The viscosity of a fluid is the most important characteristic in fluid rheology. Many microfluidic devices have been proposed for easily measuring the fluid viscosity of small samples. A hybrid system consisting of a smartphone and microfluidic device can offer a mobile laboratory for performing a wide range of detection and analysis functions related to healthcare. In this study, a new mobile sensing method based on a microfluidic device was proposed for fluid viscosity measurements. By separately delivering sample and reference fluids into the two inlets of a Y-shaped microfluidic device, an interfacial line is induced at downstream of the device. Because the interfacial width (W) between the sample and reference fluid flows was determined by their pressure ratio, the viscosity (μ) of the sample could be estimated by measuring the interfacial width. To distinguish the interfacial width of a sample, optical images of the flows at downstream of the Y-shaped microfluidic device were acquired using a smartphone. To check the measurement accuracy of the proposed method, the viscosities of glycerol mixtures were compared with those measured by a conventional viscometer. The proposed technique was applied to monitor the variations in blood and oil samples depending on storage or rancidity. We expect that this mobile sensing method based on a microfluidic device could be utilized as a viscometer with significant advantages in terms of mobility, ease-of-operation, and data management.

Validation and comparison of two sampling methods to assess dermal exposure to drilling fluids and crude oil.

PubMed

Galea, Karen S; McGonagle, Carolyn; Sleeuwenhoek, Anne; Todd, David; Jiménez, Araceli Sánchez

2014-06-01

Dermal exposure to drilling fluids and crude oil is an exposure route of concern. However, there have been no published studies describing sampling methods or reporting dermal exposure measurements. We describe a study that aimed to evaluate a wipe sampling method to assess dermal exposure to an oil-based drilling fluid and crude oil, as well as to investigate the feasibility of using an interception cotton glove sampler for exposure on the hands/wrists. A direct comparison of the wipe and interception methods was also completed using pigs' trotters as a surrogate for human skin and a direct surface contact exposure scenario. Overall, acceptable recovery and sampling efficiencies were reported for both methods, and both methods had satisfactory storage stability at 1 and 7 days, although there appeared to be some loss over 14 days. The methods' comparison study revealed significantly higher removal of both fluids from the metal surface with the glove samples compared with the wipe samples (on average 2.5 times higher). Both evaluated sampling methods were found to be suitable for assessing dermal exposure to oil-based drilling fluids and crude oil; however, the comparison study clearly illustrates that glove samplers may overestimate the amount of fluid transferred to the skin. Further comparison of the two dermal sampling methods using additional exposure situations such as immersion or deposition, as well as a field evaluation, is warranted to confirm their appropriateness and suitability in the working environment. © The Author 2014. Published by Oxford University Press on behalf of the British Occupational Hygiene Society.

Lysimeter methods and apparatus

DOEpatents

Clark, Don T.; Erickson, Eugene E.; Casper, William L.; Everett, David M.; Hubbell, Joel M.; Sisson, James B.

2004-12-07

A suction lysimeter for sampling subsurface liquids includes a lysimeter casing having a drive portion, a reservoir portion, and a tip portion, the tip portion including a membrane through which subsurface liquids may be sampled; a fluid conduit coupled in fluid flowing relation relative to the membrane, and which in operation facilitates the delivery of the sampled subsurface liquids from the membrane to the reservoir portion; and a plurality of tubes coupled in fluid flowing relation relative to the reservoir portion, the tubes in operation facilitating delivery of the sampled subsurface liquids from the reservoir portion for testing. A method of sampling subsurface liquids comprises using this lysimeter.

Evaluation of a commercial rubella IgM assay for use on oral fluid samples for diagnosis and surveillance of congenital rubella syndrome and postnatal rubella.

PubMed

Vijaylakshmi, P; Muthukkaruppan, V R; Rajasundari, A; Korukluoglu, G; Nigatu, W; L A Warrener; Samuel, D; Brown, D W G

2006-12-01

Clinical diagnosis (surveillance) of rubella is unreliable and laboratory confirmation is essential. Detection of virus specific IgM in serum is the most commonly used method. However, the use of serum necessitates the drawing of blood, either through venipuncture or finger/heel prick, which can be difficult in young babies. Oral fluid samples have proved useful as an alternative, less invasive sample for virus specific IgM detection however until recently no commercial rubella IgM tests were available, restricting the usefulness of this approach. To evaluate the performance of the Microimmune Rubella IgM capture EIA using oral fluid samples from outbreaks as well as in cases of suspected congenital rubella syndrome (CRS). Paired serum and oral fluids were collected from cases during a rubella outbreak in three provinces in Turkey. Matched serum and oral fluid samples were collected from children with suspected CRS in an active surveillance programme at the Aravind Eye Hospital in South India. Serum samples were collected as part of the measles surveillance programme in Ethiopia. On serum samples the sensitivity and specificity of the Microimmune Rubella IgM capture EIA compared to Behring Enzygnost rubella IgM test was 96.9% (62/64; 95% CI 94.2-100%) and 100% (53/53; 95% CI 93.2-100%). On oral fluids compared to matched Behring results on serum the sensitivity was 95.5% (42/44; 95% CI 84.5-99.4%). The sensitivity and specificity of Microimmune Rubella IgM capture EIA on oral fluids from suspected CRS cases compared to serum results using Behring Enzygnost IgM assay was 100% (95% CI 84.5-100%) and 100% (95% CI 95.8-100.0%) respectively. Microimmune Rubella IgM capture EIA has adequate performance for diagnosis and surveillance of rubella in outbreak using either serum or oral fluid specimens.

Fluid sampling tool

DOEpatents

Johnston, Roger G.; Garcia, Anthony R. E.; Martinez, Ronald K.

2001-09-25

The invention includes a rotatable tool for collecting fluid through the wall of a container. The tool includes a fluid collection section with a cylindrical shank having an end portion for drilling a hole in the container wall when the tool is rotated, and a threaded portion for tapping the hole in the container wall. A passageway in the shank in communication with at least one radial inlet hole in the drilling end and an opening at the end of the shank is adapted to receive fluid from the container. The tool also includes a cylindrical chamber affixed to the end of the shank opposite to the drilling portion thereof for receiving and storing fluid passing through the passageway. The tool also includes a flexible, deformable gasket that provides a fluid-tight chamber to confine kerf generated during the drilling and tapping of the hole. The invention also includes a fluid extractor section for extracting fluid samples from the fluid collecting section.

A survey of the occurrence of Bacillus anthracis in North American soils over two long-range transects and within post-Katrina New Orleans

USGS Publications Warehouse

Griffin, Dale W.; Petrosky, Terry; Morman, Suzette A.; Luna, Vicki A.

2009-01-01

Soil samples were collected along a north-south transect extending from Manitoba, Canada, to the US-Mexico border near El Paso, Texas in 2004 (104 samples), a group of sites within New Orleans, Louisiana following Hurricane Katrina in 2005 (19 samples), and a Gulf Coast transect extending from Sulphur, Louisiana, to DeFuniak Springs, Florida, in 2007 (38 samples). Samples were collected from the top 40 cm of soil and were screened for the presence of total Bacillus species and Bacillus anthracis (anthrax), specifically using multiplex-polymerase chain reaction (PCR). Using an assay with a sensitivity of ~170 equivalent colony-forming units (CFU) g-1 field moist soil, the prevalence rate of Bacillus sp./B. anthracis in the north-south transect and the 2005 New Orleans post-Katrina sample set were 20/5% and 26/26%, respectively. Prevalence in the 2007 Gulf Coast sample set using an assay with a sensitivity of ~4 CFU g-1 of soil was 63/0%. Individual transect-set data indicate a positive relation between occurrences of species and soil moisture or soil constituents (i.e., Zn and Cu content). The 2005 New Orleans post-Katrina data indicated that B. anthracis is readily detectable in Gulf Coast soils following flood events. The data also indicated that occurrence, as it relates to soil chemistry, may be confounded by flood-induced dissemination of germinated cells and the mixing of soil constituents for short temporal periods following an event.

A survey of the occurrence of Bacillus anthracis in North American soils over two long-range transects and within post-Katrina New Orleans

USGS Publications Warehouse

Griffin, Dale W.; Petrosky, T.; Morman, S.A.; Luna, V.A.

2009-01-01

Soil samples were collected along a north-south transect extending from Manitoba, Canada, to the US-Mexico border near El Paso, Texas in 2004 (104 samples), a group of sites within New Orleans, Louisiana following Hurricane Katrina in 2005 (19 samples), and a Gulf Coast transect extending from Sulphur, Louisiana, to DeFuniak Springs, Florida, in 2007 (38 samples). Samples were collected from the top 40 cm of soil and were screened for the presence of total Bacillus species and Bacillus anthracis (anthrax), specifically using multiplex-polymerase chain reaction (PCR). Using an assay with a sensitivity of ???170 equivalent colony-forming units (CFU) g-1 field moist soil, the prevalence rate of Bacillus sp./B. anthracis in the north-south transect and the 2005 New Orleans post-Katrina sample set were 20/5% and 26/26%, respectively. Prevalence in the 2007 Gulf Coast sample set using an assay with a sensitivity of ???4 CFU g-1 of soil was 63/0%. Individual transect-set data indicate a positive relation between occurrences of species and soil moisture or soil constituents (i.e., Zn and Cu content). The 2005 New Orleans post-Katrina data indicated that B. anthracis is readily detectable in Gulf Coast soils following flood events. The data also indicated that occurrence, as it relates to soil chemistry, may be confounded by flood-induced dissemination of germinated cells and the mixing of soil constituents for short temporal periods following an event.

Analysis of lipophilic marine biotoxins by liquid chromatography coupled with high-resolution mass spectrometry in seawater from the Catalan Coast.

PubMed

Bosch-Orea, Cristina; Sanchís, Josep; Farré, Marinella; Barceló, Damià

2017-09-01

Marine biotoxins regularly occur along the coast, with several consequences for the environment as well as the food industry. Monitoring of these compounds in seawater is required to assure the safety of marine resources for human consumption, providing a means for forecasting shellfish contamination events. In this study, an analytical method was developed for the detection of ten lipophilic marine biotoxins in seawater: azaspiracids 1, 2, 3, 4 and 5, classified as azaspiracid shellfish poisoning toxins, and pectenotoxin 2, okadaic acid and the related dinophysistoxin 1, yessotoxin and homoyessotoxin, classified as diarrheic shellfish poisoning toxins. The method is based on the application of solid-liquid ultrasound-assisted extraction and solid-phase extraction, followed by high-performance liquid chromatography coupled with high-resolution mass spectrometry. The limits of detection of this method are in the range of nanograms per litre and picograms per litre for most of the compounds, and recoveries range from 20.5% to 97.2%. To validate the effectiveness of this method, 36 samples of surface water from open coastal areas and marinas located along the Catalan coast on the Mediterranean Sea were collected and analysed. Eighty-eight per cent of these samples exhibited okadaic acid in particulate and aqueous phases in concentrations ranging from 0.11 to 560 μg/g and from 2.1 to 1780 ng/L respectively. Samples from open coastal areas exhibited higher concentrations of okadaic acid in particulate material, whereas in samples collected in sportive ports, the particulate material exhibited lower levels than the aqueous phase. Graphical Abstract Biotoxins investigated in seawater of the Catalan coast.

Membrane materials for storing biological samples intended for comparative nanotoxicological testing

NASA Astrophysics Data System (ADS)

Metelkin, A.; Kuznetsov, D.; Kolesnikov, E.; Chuprunov, K.; Kondakov, S.; Osipov, A.; Samsonova, J.

2015-11-01

The study is aimed at identifying the samples of most promising membrane materials for storing dry specimens of biological fluids (Dried Blood Spots, DBS technology). Existing sampling systems using cellulose fiber filter paper have a number of drawbacks such as uneven distribution of the sample spot, dependence of the spot spreading area on the individual biosample properties, incomplete washing-off of the sample due to partially inconvertible sorption of blood components on cellulose fibers, etc. Samples of membrane materials based on cellulose, polymers and glass fiber with applied biosamples were studied using methods of scanning electron microscopy, FT-IR spectroscopy and surface-wetting measurement. It was discovered that cellulose-based membrane materials sorb components of biological fluids inside their structure, while membranes based on glass fiber display almost no interaction with the samples and biological fluid components dry to films in the membrane pores between the structural fibers. This characteristic, together with the fact that membrane materials based on glass fiber possess sufficient strength, high wetting properties and good storage capacity, attests them as promising material for dry samples of biological fluids storage systems.

Determination of As concentration in earthworm coelomic fluid extracts by total-reflection X-ray fluorescence spectrometry

NASA Astrophysics Data System (ADS)

Allegretta, Ignazio; Porfido, Carlo; Panzarino, Onofrio; Fontanella, Maria Chiara; Beone, Gian Maria; Spagnuolo, Matteo; Terzano, Roberto

2017-04-01

Earthworms are often used as sentinel organisms to study As bioavailability in polluted soils. Arsenic in earthworms is mainly sequestrated in the coelomic fluids whose As content can therefore be used to asses As bioavalability. In this work, a method for determining As concentration in coelomic fluid extracts using total-reflection X-ray fluorescence spectrometry (TXRF) is presented. For this purpose coelomic fluid extracts from earthworms living in three polluted soils and one non-polluted (control) soil have been collected and analysed. A very simple sample preparation was implemented, consisting of a dilution of the extracts with polyvinyl alcohol (PVA) using a 1:8 ratio and dropwise deposition of the sample on the reflector. A detection limit of 0.2 μg/l and quantification limit of 0.6 μg/l was obtained in the diluted samples, corresponding to 2 μg/l and 6 μg/l in the coelomic fluid extracts, respectively. This allowed to quantify As concentration in coelomic fluids extracted from earthworms living in soils polluted with As at concentrations higher than 20 mg/kg (considered as a pollution threshold for agricultural soils). The TXRF method has been validated by comparison with As concentrations in standards and by analysing the same samples by ICP-MS, after acid digestion of the sample. The low limit of detection, the proven reliability of the method and the little sample preparation make TXRF a suitable, cost-efficient and "green" technique for the analysis of As in earthworm coelomic fluid extracts for bioavailability studies.

Evolution of strength and physical properties of carbonate and ultramafic rocks under hydrothermal conditions

NASA Astrophysics Data System (ADS)

Lisabeth, Harrison Paul

Interaction of rocks with fluids can significantly change mineral assemblage and structure. This so-called hydrothermal alteration is ubiquitous in the Earth's crust. Though the behavior of hydrothermally altered rocks can have planet-scale consequences, such as facilitating oceanic spreading along slow ridge segments and recycling volatiles into the mantle at subduction zones, the mechanisms involved in the hydrothermal alteration are often microscopic. Fluid-rock interactions take place where the fluid and rock meet. Fluid distribution, flux rate and reactive surface area control the efficiency and extent of hydrothermal alteration. Fluid-rock interactions, such as dissolution, precipitation and fluid mediated fracture and frictional sliding lead to changes in porosity and pore structure that feed back into the hydraulic and mechanical behavior of the bulk rock. Examining the nature of this highly coupled system involves coordinating observations of the mineralogy and structure of naturally altered rocks and laboratory investigation of the fine scale mechanisms of transformation under controlled conditions. In this study, I focus on fluid-rock interactions involving two common lithologies, carbonates and ultramafics, in order to elucidate the coupling between mechanical, hydraulic and chemical processes in these rocks. I perform constant strain-rate triaxial deformation and constant-stress creep tests on several suites of samples while monitoring the evolution of sample strain, permeability and physical properties. Subsequent microstructures are analyzed using optical and scanning electron microscopy. This work yields laboratory-based constraints on the extent and mechanisms of water weakening in carbonates and carbonation reactions in ultramafic rocks. I find that inundation with pore fluid thereby reducing permeability. This effect is sensitive to pore fluid saturation with respect to calcium carbonate. Fluid inundation weakens dunites as well. The addition of carbon dioxide to pore fluid enhances compaction and partial recovery of strength compared to pure water samples. Enhanced compaction in CO2-rich fluid samples is not accompanied by enhanced permeability reduction. Analysis of sample microstructures indicates that precipitation of carbonates along fracture surfaces is responsible for the partial restrengthening and channelized dissolution of olivine is responsible for permeability maintenance.

Maritime climate influence on chaparral composition and diversity in the coast range of central California.

PubMed

Vasey, Michael C; Parker, V Thomas; Holl, Karen D; Loik, Michael E; Hiatt, Seth

2014-09-01

We investigated the hypothesis that maritime climatic factors associated with summer fog and low cloud stratus (summer marine layer) help explain the compositional diversity of chaparral in the coast range of central California. We randomly sampled chaparral species composition in 0.1-hectare plots along a coast-to-interior gradient. For each plot, climatic variables were estimated and soil samples were analyzed. We used Cluster Analysis and Principle Components Analysis to objectively categorize plots into climate zone groups. Climate variables, vegetation composition and various diversity measures were compared across climate zone groups using ANOVA and nonmetric multidimensional scaling. Differences in climatic variables that relate to summer moisture availability and winter freeze events explained the majority of variance in measured conditions and coincided with three chaparral assemblages: maritime (lowland coast where the summer marine layer was strongest), transition (upland coast with mild summer marine layer influence and greater winter precipitation), and interior sites that generally lacked late summer water availability from either source. Species turnover (β-diversity) was higher among maritime and transition sites than interior sites. Coastal chaparral differs from interior chaparral in having a higher obligate seeder to facultative seeder (resprouter) ratio and by being dominated by various Arctostaphylos species as opposed to the interior dominant, Adenostoma fasciculatum. The maritime climate influence along the California central coast is associated with patterns of woody plant composition and β-diversity among sites. Summer fog in coastal lowlands and higher winter precipitation in coastal uplands combine to lower late dry season water deficit in coastal chaparral and contribute to longer fire return intervals that are associated with obligate seeders and more local endemism. Soil nutrients are comparatively less important in explaining plant community composition, but heterogeneous azonal soils contribute to local endemism and promote isolated chaparral patches within the dominant forest vegetation along the coast.

Identifying the source of tar balls deposited along the beaches of Goa in 2013 and comparing with historical data collected along the West Coast of India.

PubMed

Suneel, V; Vethamony, P; Naik, B G; Krishna, M S; Jadhav, Lakshmikant

2015-09-15

Deposition of oil residues, also known as tar balls, is a seasonal phenomenon, and it occurs only in the southwest monsoon season along the west coast of India. This has become a serious environmental issue, as Goa is a global tourist destination. The present work aims at identifying the source oil of the tar balls that consistently depositing along the Goa coast using multi-marker fingerprint technique. In this context, the tar ball samples collected in May 2013 from 9 beaches of Goa coast and crude oils from different oil fields and grounded ship were subject to multi-marker analyses such as n-alkanes, pentacyclic terpanes, regular steranes, compound specific isotope analysis (CSIA) and principle component analysis (PCA). The n-alkane weathering index shows that samples have been weathered to various degrees, and the status of weathering is moderate. Since the international tanker route passes closer to the west coast of India (WCI), it is generally presumed that tanker wash is the source of the tar balls. We found that 2010/2011 tar balls are as tanker wash, but the present study demonstrates that the Bombay High (BH) oil fields can also contribute to oil contamination (tar balls) along ≈ 650 km stretch of the WCI, running from Gujarat in the north to Goa in the south. The simulated trajectories show that all the particles released in April traveled in the southeast direction, and by May, they reached the Goa coast with the influence of circulation of Indian monsoon system. Copyright © 2015 Elsevier B.V. All rights reserved.

Fluid Inclusion Gas Analysis

DOE Data Explorer

Dilley, Lorie

2013-01-01

Fluid inclusion gas analysis for wells in various geothermal areas. Analyses used in developing fluid inclusion stratigraphy for wells and defining fluids across the geothermal fields. Each sample has mass spectrum counts for 180 chemical species.

Perilymph sampling from the cochlear apex: a reliable method to obtain higher purity perilymph samples from scala tympani.

PubMed

Salt, Alec N; Hale, Shane A; Plonkte, Stefan K R

2006-05-15

Measurements of drug levels in the fluids of the inner ear are required to establish kinetic parameters and to determine the influence of specific local delivery protocols. For most substances, this requires cochlear fluids samples to be obtained for analysis. When auditory function is of primary interest, the drug level in the perilymph of scala tympani (ST) is most relevant, since drug in this scala has ready access to the auditory sensory cells. In many prior studies, ST perilymph samples have been obtained from the basal turn, either by aspiration through the round window membrane (RWM) or through an opening in the bony wall. A number of studies have demonstrated that such samples are likely to be contaminated with cerebrospinal fluid (CSF). CSF enters the basal turn of ST through the cochlear aqueduct when the bony capsule is perforated or when fluid is aspirated. The degree of sample contamination has, however, not been widely appreciated. Recent studies have shown that perilymph samples taken through the round window membrane are highly contaminated with CSF, with samples greater than 2microL in volume containing more CSF than perilymph. In spite of this knowledge, many groups continue to sample from the base of the cochlea, as it is a well-established method. We have developed an alternative, technically simple method to increase the proportion of ST perilymph in a fluid sample. The sample is taken from the apex of the cochlea, a site that is distant from the cochlear aqueduct. A previous problem with sampling through a perforation in the bone was that the native perilymph rapidly leaked out driven by CSF pressure and was lost to the middle ear space. We therefore developed a procedure to collect all the fluid that emerged from the perforated apex after perforation. We evaluated the method using a marker ion trimethylphenylammonium (TMPA). TMPA was applied to the perilymph of guinea pigs either by RW irrigation or by microinjection into the apical turn. The TMPA concentration of the fluid sample was compared with that measured in perilymph prior to taking the sample using a TMPA-selective microelectrode sealed into ST. Data were interpreted with a finite element model of the cochlear fluids that was used to simulate each aspect of the experiment. The correction of sample concentration back to the perilymph concentration prior to sampling can be performed based on the known ST volume (4.7microL in the guinea pig) and the sample volume. A more precise correction requires some knowledge of the profile of drug distribution along the cochlear prior to sampling. This method of sampling from the apex is technically simple and provides a larger sample volume with a greater proportion of perilymph compared to sampling through the RW.

Perilymph Sampling from the Cochlear Apex: A Reliable Method to Obtain Higher Purity Perilymph Samples from Scala Tympani

PubMed Central

Salt, Alec N.; Hale, Shane A.; Plontke, Stefan K. R.

2006-01-01

Measurements of drug levels in the fluids of the inner ear are required to establish kinetic parameters and to determine the influence of specific local delivery protocols. For most substances, this requires cochlear fluids samples to be obtained for analysis. When auditory function is of primary interest, the drug level in the perilymph of scala tympani (ST) is most relevant, since drug in this scala has ready access to the auditory sensory cells. In many prior studies, ST perilymph samples have been obtained from the basal turn, either by aspiration through the round window membrane (RWM) or through an opening in the bony wall. A number of studies have demonstrated that such samples are likely to be contaminated with cerebrospinal fluid (CSF). CSF enters the basal turn of ST through the cochlear aqueduct when the bony capsule is perforated or when fluid is aspirated. The degree of sample contamination has, however, not been widely appreciated. Recent studies have shown that perilymph samples taken through the round window membrane are highly contaminated with CSF, with samples greater than 2 μL in volume containing more CSF than perilymph. In spite of this knowledge, many groups continue to sample from the base of the cochlea, as it is a well-established method. We have developed an alternative, technically simple method to increase the proportion of ST perilymph in a fluid sample. The sample is taken from the apex of the cochlea, a site that is distant from the cochlear aqueduct. A previous problem with sampling through a perforation in the bone was that the native perilymph rapidly leaked out driven by CSF pressure and was lost to the middle ear space. We therefore developed a procedure to collect all the fluid that emerged from the perforated apex after perforation. We evaluated the method using a marker ion trimethylphenylammonium (TMPA). TMPA was applied to the perilymph of guinea pigs either by RW irrigation or by microinjection into the apical turn. The TMPA concentration of the fluid sample was compared with that measured in perilymph prior to taking the sample using a TMPA-selective microelectrode sealed into ST. Data were interpreted with a finite element model of the cochlear fluids that was used to simulate each aspect of the experiment. The correction of sample concentration back to the perilymph concentration prior to sampling can be performed based on the known ST volume (4.7 μL in the guinea pig) and the sample volume. A more precise correction requires some knowledge of the profile of drug distribution along the cochlear prior to sampling. This method of sampling from the apex is technically simple and provides a larger sample volume with a greater proportion of perilymph compared to sampling through the RW. PMID:16310856

Trace level detection of analytes using artificial olfactometry

NASA Technical Reports Server (NTRS)

Wong, Bernard (Inventor); Lewis, Nathan S. (Inventor); Severin, Erik J. (Inventor)

2001-01-01

The present invention provides a device for detecting the presence of an analyte, wherein said analyte is a microorganism marker gas. The device comprises a sample chamber having a fluid inlet port for the influx of the microorganism marker gas; a fluid concentrator in flow communication with the sample chamber, wherein the fluid concentrator has an absorbent material capable of absorbing the microorganism marker gas and thereafter releasing a concentrated microorganism marker gas; and an array of sensors in fluid communication with the concentrated microorganism marker gas. The sensor array detects and identifies the marker gas upon its release from fluid concentrate.

THE EFFECT OF RATE OF GLAND FUNCTION ON PAROTID FLUID URIC ACID LEVELS.

DTIC Science & Technology

Paired parotid fluid samples were collected without exogenous stimulation and at 5 different gustation-induced rates of flow. Enzymatic uric acid...diminished as flow rate increased. It is suggested that parotid fluid samples for uric acid analysis should be collected at flow rates of 0.7 ml./min. or more. (Author)

Fogwater Chemistry and Air Quality in the Texas-Louisiana Gulf Coast Corridor

NASA Astrophysics Data System (ADS)

Kommalapati, R. R.; Raja, S.; Ravikrishna, R.; Murugesan, K.; Collett, J. L.; Valsaraj, K.

2007-05-01

The presence of fog water in polluted atmosphere can influence atmospheric chemistry and air quality. The study of interactions between fog water and atmospheric gases and aerosols are very important in understanding the atmospheric fate of the pollutants. In this Study several air samples and fogwater samples were collected in the heavily industrialized area of Gulf Coast corridor( Houston, TX and Baton Rouge, LA). A total of 32 fogwater samples were collected, comprising of nine fog events in Baton Rouge (Nov 2004 to Feb 2005) and two fog events in Houston (Feb, 2006), during the fog sampling campaigns. These samples were analyzed for pH, total and dissolved carbon, major inorganic ions, organic acids, and aromatics, aldehydes, VOCs, and linear alkanes organic compounds. Fogwater samples collected in Houston show clear influence of marine and anthropogenic environment, while Baton Rouge samples reveal a relatively less polluted environment. Also, a time series observation of air samples indicated that fog event at the monitoring site impacted the air concentrations of the pollutants. This is attributed to presence of surface active organic matter in fog water.

Direct observation of the evolution of a seafloor 'black smoker' from vapor to brine

USGS Publications Warehouse

Von Damm, Karen L.; Buttermore, L.G.; Oosting, S.E.; Bray, A.M.; Fornari, D.J.; Lilley, M.D.; Shanks, Wayne C.

1997-01-01

A single hydrothermal vent, 'F' vent, occurring on very young crust at 9??16.8???N, East Pacific Rise, was sampled in 1991 and 1994. In 1991, at the measured temperature of 388??C and seafloor pressure of 258 bar, the fluids from this vent were on the two-phase curve for seawater. These fluids were very low in chlorinity and other dissolved species, and high in gases compared to seawater and most sampled seafloor hydrothermal vent fluids. In 1994, when this vent was next sampled, it had cooled to 351??C and was venting fluids ???1.5 times seawater chlorinity. This is the first reported example of a single seafloor hydrothermal vent evolving from vapor to brine. The 1991 and 1994 fluids sampled from this vent are compositionally conjugate pairs to one another. These results support the hypothesis that vapor-phase fluids vent in the early period following a volcanic eruption, and that the liquid-phase brines are stored within the oceanic crust, and vent at a later time, in this case 3 years. These results demonstrate that the venting of brines can occur in the same location, in fact from the same sulfide edifice, where the vapor-phase fluids vented previously.

The Relationships of Racial Identity and Gender Role Conflict to Self-Esteem of Asian American Undergraduate Men

ERIC Educational Resources Information Center

Shek, Yen Ling; McEwen, Marylu K.

2012-01-01

This study was conducted using a sample of Asian American male college students (N = 173) from one east coast public, research institution and one west coast public, research institution to explore the relationships of racial identity and gender role conflict with self-esteem. The study employed the People of Color Racial Identity Attitudes Scale,…

Stress and Coping Strategies among Distance Education Students at the University of Cape Coast, Ghana

ERIC Educational Resources Information Center

Kwaah, Christopher Yaw; Essilfie, Gabriel

2017-01-01

This study was designed to identify the causes of stress and coping strategies adopted among distance education students at the College of Distance Education in the University of Cape Coast. A total of 332 diploma and post-diploma final year students in 2014/2015 academic year were selected from two study centers using random sampling procedure to…

Avian Influenza in Wild Birds, Central Coast of Peru

PubMed Central

Blazes, David L.; Icochea, Eliana; Gonzalez, Rosa I.; Kochel, Tadeusz; Tinoco, Yeny; Sovero, Merly M.; Lindstrom, Stephen; Shu, Bo; Klimov, Alexander; Gonzalez, Armando E.; Montgomery, Joel M.

2009-01-01

To determine genotypes of avian influenza virus circulating among wild birds in South America, we collected and tested environmental fecal samples from birds along the coast of Peru, June 2006–December 2007. The 9 isolates recovered represented 4 low-pathogenicity avian influenza strains: subtypes H3N8, H4N5, H10N9, and H13N2. PMID:19523296

Diet of some spring migrant landbirds on the Caribbean coast of Costa Rica

Treesearch

Jared D. Wolfe

2009-01-01

Spring dietary patterns of migrants in tropical latitudes are largely unknown. Here I present diet data derived from an analysis of fecal samples for six migrant landbird species during spring migration along the Caribbean coast of Costa Rica. High levels of insectivory were detected for all six species captured. The nature of the data presented is discussed in light...

Health Hazard Evaluation Report HETA 83-107-1574, Dana Corporation, Fort Wayne, Indiana

DOE Office of Scientific and Technical Information (OSTI.GOV)

Parrish, R.G.; Wallingford, K.M.

1985-04-01

Environmental and breathing-zone samples of cutting fluids and oils were analyzed at Dana Corporation, Fort Wayne, Indiana in May, 1983. The survey was requested by a company representative to evaluate the cause of dermatitis among machine-tool operators. A cutting fluid used at the facility was thought to be the cause of the dermatitis. Medical questionnaires were administered to 95 workers. Company dispensary records were reviewed. N-nitrosodimethylamine and triethanolamine were detected in new and used cutting fluid samples. Nickel, chromium, and zinc were detected in a sample of used cutting oil residue. Chloromethyl-phenol was found in two cutting fluid mix samples.more » The authors conclude that a health hazard exists at the facility. The skin problems appear to be related to exposure to cutting fluids and solvents in general, rather than a specific agent. Recommendations include using protective clothing, using waterless hand cleaners instead of solvents, and avoiding contact with chlorothene.« less

Method and apparatus for detecting gem-polyhalogenated hydrocarbons

DOEpatents

Anderson, deceased, William G.; Anderson, legal representative, Johanna S.

1990-01-01

A method and optrode for detecting gem polyhalogenated hydrocarbons in a sample fluid based on a single phase Fujiwara reaction as provided. The method comprises contacting a reaction mixture with a sample fluid which contains the gem-polyhalogenated hydrocarbons. The reaction mixture comprises an aqueous solution of pyridine or derivative thereof and a hindered nitrogen base. Upon contact a fluorescent and/or chromgenic reaction product forms whose fluorescence and/or absorbance is related to the concentration of gem-polyhalogenated hydrocarbons in the sample fluid.

Trace Gas Measurements Along the South Korean Coast Aboard the Jangmok During KOCOA

NASA Astrophysics Data System (ADS)

Erickson, M.; Stauffer, R. M.; Thompson, A. M.; Flynn, J. H., III

2017-12-01

The University of Houston deployed four instruments aboard the Jangmok during the KOrean Coastal water Ocean & Atmosphere (KOCOA) project to quantify O3, NOx, CO, and SO2 along the South Korea coast. The study explores influences of China pollution transport, estimation of the East Asia O3 background, comparisons with ground, ship, and airborne based measurements, and potential source regions along the coast. The Jangmok sailed from May 20 to June 5, 2016 from Ulsan on the east coast traversing along the southern coast to Bigeum in the west. The ship docked each night and measurements were collected only while the vessel was at sea. Sampling was divided into three profiles: anchored, drifting, and transits. Measurements while anchored and drifting provide good temporal data in a small area while transit data provide spatial coverage. The combination of sampling profiles give a better understanding of pollutants over the open water around southern Korea. A few case studies address pollutant transport from China, exploration of the relatively high East Asia O3 background, and coastal emissions along the Jangmok route and ports. The KOCOA project was conducted at the same time as the KORUS project, which provides a number of measurement platforms to compare observations. The Onnuri vessel was sailing as part of the KORUS-OC, while KORUS-AQ included a number of NIER monitoring sites and aircraft measurements. While a number of factors limited close proximity measurements with the other platforms, comparisons were explored where applicable.

Comparison of oral fluid collection methods for the molecular detection of hepatitis B virus.

PubMed

Portilho, M M; Mendonça, Acf; Marques, V A; Nabuco, L C; Villela-Nogueira, C A; Ivantes, Cap; Lewis-Ximenez, L L; Lampe, E; Villar, L M

2017-11-01

This study aims to compare the efficiency of four oral fluid collection methods (Salivette, FTA Card, spitting and DNA-Sal) to detect HBV DNA by qualitative PCR. Seventy-four individuals (32 HBV reactive and 42 with no HBV markers) donated serum and oral fluid. In-house qualitative PCR to detect HBV was used for both samples and commercial quantitative PCR for serum. HBV DNA was detected in all serum samples from HBV-infected individuals, and it was not detected in control group. HBV DNA from HBV group was detected in 17 samples collected with Salivette device, 16 samples collected by FTA Card device, 16 samples collected from spitting and 13 samples collected by DNA-Sal device. Samples that corresponded to a higher viral load in their paired serum sample could be detected using all oral fluid collection methods, but Salivette collection device yielded the largest numbers of positive samples and had a wide range of viral load that was detected. It was possible to detect HBV DNA using all devices tested, but higher number of positive samples was observed when samples were collected using Salivette device, which shows high concordance to viral load observed in the paired serum samples. © 2017 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd. All rights reserved.

Mechanical Weakening during Fluid Injection in Critically Stressed Sandstones with Acoustic Monitoring

NASA Astrophysics Data System (ADS)

David, C.; Dautriat, J. D.; Sarout, J.; Macault, R.; Bertauld, D.

2014-12-01

Water weakening is a well-known phenomenon which can lead to subsidence during the production of hydrocarbon reservoirs. The example of the Ekofisk oil field in the North Sea has been well documented for years. In order to assess water weakening effects in reservoir rocks, previous studies have focused on changes in the failure envelopes derived from mechanical tests conducted on rocks saturated either with water or with inert fluids. However, little attention has been paid so far on the mechanical behaviour during the fluid injection stage, like in enhanced oil recovery operations. We studied the effect of fluid injection on the mechanical behaviour of Sherwood sandstone, a weakly-consolidated sandstone sampled at Ladram Bay in UK. In order to highlight possible weakening effects, water and inert oil have been injected into critically-loaded samples to assess their effect on strength and elastic properties and to derive the acoustic signature of the saturation front for each fluid. The specimens were instrumented with 16 ultrasonic P-wave transducers for both passive and active acoustic monitoring during fluid injection and loading. After conducting standard triaxial tests on three samples saturated with air, water and oil respectively, mechanical creep tests were conducted on dry samples loaded at 80% of the compressive strength of the dry rock. While these conditions are kept constant, a fluid is injected at the bottom end of the sample with a low back pressure (0.5 MPa) to minimize effective stress variations during injection. Both water and oil were used as the injected pore fluid in two experiments. As soon as the fluids start to flow into the samples, creep is taking place with a much higher strain rate for water injection compared to oil injection. A transition from secondary creep to tertiary creep is observed in the water injection test whereas in the oil injection test no significant creep acceleration is observed after one pore volume of oil was injected. The most remarkable difference is that water injection induces mechanical instability and failure, whereas oil injection does not. This was confirmed by the analysis of acoustic emissions activity and post-mortem sample imaging using CT scan. Contrasting evolutions of the P wave velocity during the fluid front propagation were also observed in both experiments.

Microbial diversity within Juan de Fuca ridge basement fluids sampled from oceanic borehole observatories

NASA Astrophysics Data System (ADS)

Jungbluth, S.; Bowers, R.; Lin, H.; Hsieh, C.; Cowen, J. P.; Rappé, M.

2012-12-01

Three generations of sampling and instrumentation platforms known as Circulation Obviation Retrofit Kit (CORK) observatories affixed to Ocean Drilling Program (ODP) and Integrated Ocean Drilling Program (IODP) boreholes are providing unrivaled access to fluids originating from 1.2-3.5 million-years (Myr) old basaltic crust of the eastern flank of the Juan de Fuca ridge. Borehole fluid samples obtained via a custom seafloor fluid pumping and sampling system coupled to CORK continuous fluid delivery lines are yielding critical insights into the biogeochemistry and nature of microbial life inhabiting the sediment-covered basement environment. Direct microscopic enumeration revealed microbial cell abundances that are 2-41% of overlying bottom seawater. Snapshots of basement fluid microbial diversity and community structure have been obtained through small subunit ribosomal RNA (SSU rRNA) gene cloning and sequencing from five boreholes that access a range of basement ages and temperatures at the sediment-basement interface. SSU rRNA gene clones were derived from four different CORK installations (1026B, 1301A, 1362A, and 1362B) accessing relatively warmer (65°C) and older (3.5 Myr) ridge flank, and one location (1025C) accessing relatively cooler (39°C) and younger (1.2 Myr) ridge flank, revealing that warmer basement fluids had higher microbial diversity. A sampling time-series collected from borehole 1301A has revealed a microbial community that is temporally variable, with the dominant lineages changing between years. Each of the five boreholes sampled contained a unique microbial assemblage, however, common members are found from both cultivated and uncultivated lineages within the archaeal and bacterial domains, including meso- and thermophilic microbial lineages involved with sulfur cycling (e.g Thiomicrospira, Sulfurimonas, Desulfocapsa, Desulfobulbus). In addition, borehole fluid environmental gene clones were also closely related to uncultivated lineages recovered from both terrestrial and marine hydrothermal systems (e.g. Candidatus Desulforudis, Candidate Phylum OP8) as well as globally distributed marine sediments (e.g. Miscellaneous Crenarchaeotic Group, JTB35). This analysis provides a framework for future research investigating the evolutionary and functional diversity, population genetics, and activity of the poorly understood habitat. These ongoing sampling expeditions greatly benefit from improvements to both CORK observatories and evolving sampling equipment including microbiologically-friendly materials and dependable access to pristine fluids from the ocean crust.

One-carbon (bio ?) Geochemistry in Subsurface Waters of the Serpentinizing Coast Range Ophiolite

NASA Technical Reports Server (NTRS)

Hoehler, Tori M.; Mccollom, Tom; Schrenk, Matt; Cardace, Dawn

2011-01-01

Serpentinization - the aqueous alteration of ultramafic rocks - typically imparts a highly reducing and alkaline character to the reacting fluids. In turn, these can influence the speciation and potential for metabolism of one-carbon compounds in the system. We examined the aqueous geochemistry and assessed the biological potential of one-carbon compounds in the subsurface of the McLaughlin Natural Reserve (Coast Range Ophiolite, California, USA). Fluids from wells sunk at depths of 25-90 meters have pH values ranging from 9.7 to 11.5 and dissolved inorganic carbon (DIC concentrations) generally below 60 micromolar. Methane is present at concentrations up to 1.3 millimolar (approximately one-atmosphere saturation), and hydrogen concentrations are below 15 nanomolar, suggesting active consumption of H2 and production of CH4. However, methane production from CO2 is thermodynamically unfavorable under these conditions. Additionally, the speciation of DIC predominantly into carbonate at these high pH values creates a problem of carbon availability for any organisms that require CO2 (or bicarbonate) for catabolism or anabolism. A potential alternative is carbon monoxide, which is present in these waters at concentrations 2000-fold higher than equilibrium with atmospheric CO. CO is utilized in a variety of metabolisms, including methanogenesis, and bioavailability is not adversely affected by pH-dependent speciation (as for DIC). Methanogenesis from CO under in situ conditions is thermodynamically favorable and would satisfy biological energy requirements with respect to both Gibbs Energy yield and power.

Neutrophil Extracellular Traps in the Amniotic Cavity of Women with Intra-Amniotic Infection: A New Mechanism of Host Defense.

PubMed

Gomez-Lopez, Nardhy; Romero, Roberto; Xu, Yi; Miller, Derek; Unkel, Ronald; Shaman, Majid; Jacques, Suzanne M; Panaitescu, Bogdan; Garcia-Flores, Valeria; Hassan, Sonia S

2017-08-01

Neutrophil extracellular traps (NETs) control microbial infections through their antimicrobial activities attributed to DNA, histones, granules, and cytoplasmic proteins (eg, elastase). Intra-amniotic infection is characterized by the influx of neutrophils into the amniotic cavity; therefore, the aim of this study was to determine whether amniotic fluid neutrophils form NETs in this inflammatory process. Amniotic fluid samples from women with intra-amniotic infection (n = 15) were stained for bacteria detection using fluorescent dyes. Amniotic fluid neutrophils were purified by filtration. As controls, neutrophils from maternal blood samples (n = 3) were isolated by density gradients. Isolated neutrophils were plated onto glass cover slips for culture with and without 100 nM of phorbol-12-myristate-13-acetate (PMA). NET formation was assessed by 4',6-diamidino-2-phenylindole (DAPI) staining and scanning electron microscopy. Different stages of NET formation were visualized using antibodies against elastase and histone H3, in combination with DAPI staining, by confocal microscopy. Finally, maternal or neonatal neutrophils were added to amniotic fluid samples from women without intra-amniotic infection (n = 4), and NET formation was evaluated by DAPI staining. (1) NETs were present in the amniotic fluid of women with intra-amniotic infection; (2) all of the amniotic fluid samples had detectable live and dead bacteria associated with the presence of NETs; (3) in contrast to neutrophils from the maternal circulation, amniotic fluid neutrophils did not require PMA stimulation to form NETs; (4) different stages of NET formation were observed by co-localizing elastase, histone H3, and DNA in amniotic fluid neutrophils; and (5) neither maternal nor neonatal neutrophils form NETs in the amniotic fluid of women without intra-amniotic infection. NETs are detectable in the amniotic fluid of women with intra-amniotic infection.

Total nucleated cell and leukocyte differential counts in canine pleural and peritoneal fluid and equine synovial fluid samples: comparison of automated and manual methods.

PubMed

Brudvig, Jean M; Swenson, Cheryl L

2015-12-01

Rapid and precise measurement of total and differential nucleated cell counts is a crucial diagnostic component of cavitary and synovial fluid analyses. The objectives of this study included (1) evaluation of reliability and precision of canine and equine fluid total nucleated cell count (TNCC) determined by the benchtop Abaxis VetScan HM5, in comparison with the automated reference instruments ADVIA 120 and the scil Vet abc, respectively, and (2) comparison of automated with manual canine differential nucleated cell counts. The TNCC and differential counts in canine pleural and peritoneal, and equine synovial fluids were determined on the Abaxis VetScan HM5 and compared with the ADVIA 120 and Vet abc analyzer, respectively. Statistical analyses included correlation, least squares fit linear regression, Passing-Bablok regression, and Bland-Altman difference plots. In addition, precision of the total cell count generated by the VetScan HM5 was determined. Agreement was excellent without significant constant or proportional bias for canine cavitary fluid TNCC. Automated and manual differential counts had R(2)  < .5 for individual cell types (least squares fit linear regression). Equine synovial fluid TNCC agreed but with some bias due to the VetScan HM5 overestimating TNCC compared to the Vet abc. Intra-assay precision of the VetScan HM5 in 3 fluid samples was 2-31%. The Abaxis VetScan HM5 provided rapid, reliable TNCC for canine and equine fluid samples. The differential nucleated cell count should be verified microscopically as counts from the VetScan HM5 and also from the ADVIA 120 were often incorrect in canine fluid samples. © 2015 American Society for Veterinary Clinical Pathology.

Determination of TBT in water and sediment samples along the Argentine Atlantic coast.

PubMed

de Waisbaum, R G; Rodriguez, C; Nudelman, N Sbarbati

2010-11-01

Cases of imposex have been reported for some organisms living in areas of the Argentine Atlantic coast. Since this is one of the known effects of the anti-fouling agent tributyltin (TBT), quantitative determinations of organotins in samples of water and sediments collected from sites along the Argentine coast were carried out. Severe cases of imposex were first reported for two gastropod species living in the Mar del Plata area, and determinations of TBT in samples collected from this site gave extremely high values and showed a close correlation between the degree of imposex and TBT concentration. Recent investigations in the area have shown a significant decrease. Surveys were also conducted in sites that exhibit highly irregular coastal profiles to examine the relevance of physical environments. Alarming concentrations of TBT were determined in most of the sites where heavy boat traffic and/or marine activities occur, demonstrating the urgent need for regulations to avoid further input of TBT. Reports from other sites in South America reveal that this should be a subject of regional concern in order to avoid severe damage to the biodiversity of regional marine organisms.

Helium isotopes in matrix pore fluids from SAFOD drill core samples suggest mantle fluids cannot be responsible for fault weakening

NASA Astrophysics Data System (ADS)

Ali, S.; Stute, M.; Torgersen, T.; Winckler, G.

2008-12-01

To quantify fluid flow in the San Andreas Fault (SAF) (and since direct fracture fluid sampling of the fault zone was not available), we have adapted a method to extract rare gases from matrix fluids of whole rocks by diffusion. Helium was measured on drill core samples obtained from 3054 m (Pacific Plate) to 3990 m (North American Plate) through the San Andreas Fault Zone (SAFZ) ~3300 m during SAFOD Phases I (2004), II (2005), III (2007). Samples were typically collected as 2.54 cm diameter subcores drilled into the ends of the cores, or from the core catcher and drillcore fragments within <2hr after core recovery. The samples were placed into ultra high vacuum stainless steel containers, flushed with ultra high purity nitrogen and immediately evacuated. Helium isotopes of the extracted matrix pore fluids and the solid matrix were determined by mass spectrometery at LDEO. Matrix porefluid 3He/4He ratios are ~0.4 - 0.5xRa (Ra: atmospheric 3He/4He = 1.384 x 10-6) in the Pacific Plate, increasing toward the SAFZ, while pore fluids in the North American Plate have a 3He/4He range of 0.7-0.9Ra, increasing away from the SAFZ (consistent with results from mud gas samples (Wiersberg and Erzinger, 2007) and direct fluid samples (Kennedy et al., 2007)). Helium isotope ratios of the solid matrix are less than 0.06Ra across the SAF in samples from both the North American and the Pacific plates, thereby excluding the host matrix as source for the enhanced isotopic signature. If the system is assumed to be in steady state, then the flux of mantle helium must be from the North American Plate to the Pacific plate. The steeper gradient in the Pacific Plate relative to the North American plate is consistent with a porosity corrected effective diffusivity. The source for this mantle helium in the North American Plate is likely related to a low crustal conductivity zone identified by magnetotelluric signals (Becken et al., 2008) that provides a channel for transport of mantle helium within brittle crust under high strain rates (Kennedy et al., 2007). The helium isotope gradients suggest that fault weakening by mantle-derived fluid pressure is unlikely. More likely, mantle fluids "bleed" into the North American plate below seismogenic depths and are transported across the fault by nonseismic, diffusive processes.

Turbulent acidic jets and plumes injected into an alkaline environment

NASA Astrophysics Data System (ADS)

Ulpre, Hendrik

2012-11-01

The characteristics of a strong acidic turbulent jet or plume injected into an alkaline environment comprising of a weak/strong base are examined theoretically and experimentally. A chemistry model is developed to understand how the pH of a fluid parcel of monoprotic acid changes as it is diluted and reacts with the ambient fluid. A standard fluid model, based on a top-hat model for acid concentration and velocity is used to express how the dilution of acid varies with distance from the point of discharge. These models are applied to estimate the point of neutralisation and the travel time with distance within the jet/plume. An experimental study was undertaken to test the theoretical results. These experiments involved injecting jets or vertical plumes of dilute nitric acid into a large tank containing a variety of base salts dissolved in water. The injected fluid contained litmus indicator dye which showed a change in colour from red to blue close to the point of neutralisation. In order to obtain a range of neutralisation distances, additional basic salts were added to the water to increase its pH buffering capacity. The results are applied to discuss the environmental implications of an acidic jet/plume injected into the sea off the South East coast of Great Britain.

Helium measurements of pore fluids obtained from the San Andreas Fault Observatory at Depth (SAFOD, USA) drill cores

NASA Astrophysics Data System (ADS)

Ali, S.; Stute, M.; Torgersen, T.; Winckler, G.; Kennedy, B. M.

2011-02-01

4He accumulated in fluids is a well established geochemical tracer used to study crustal fluid dynamics. Direct fluid samples are not always collectable; therefore, a method to extract rare gases from matrix fluids of whole rocks by diffusion has been adapted. Helium was measured on matrix fluids extracted from sandstones and mudstones recovered during the San Andreas Fault Observatory at Depth (SAFOD) drilling in California, USA. Samples were typically collected as subcores or from drillcore fragments. Helium concentration and isotope ratios were measured 4-6 times on each sample, and indicate a bulk 4He diffusion coefficient of 3.5 ± 1.3 × 10-8 cm2 s-1 at 21°C, compared to previously published diffusion coefficients of 1.2 × 10-18 cm2 s-1 (21°C) to 3.0 × 10-15 cm2 s-1 (150°C) in the sands and clays. Correcting the diffusion coefficient of 4Hewater for matrix porosity (˜3%) and tortuosity (˜6-13) produces effective diffusion coefficients of 1 × 10-8 cm2 s-1 (21°C) and 1 × 10-7 (120°C), effectively isolating pore fluid 4He from the 4He contained in the rock matrix. Model calculations indicate that <6% of helium initially dissolved in pore fluids was lost during the sampling process. Complete and quantitative extraction of the pore fluids provide minimum in situ porosity values for sandstones 2.8 ± 0.4% (SD, n = 4) and mudstones 3.1 ± 0.8% (SD, n = 4).

The partitioning of Fe, Ni, Cu, Pt, and Au between sulfide, metal, and fluid phases: A pilot study

NASA Astrophysics Data System (ADS)

Ballhaus, C.; Ryan, C. G.; Mernagh, T. P.; Green, D. H.

1994-01-01

This paper describes new experimental and analytical techniques to study element partitioning behavior between crystalline material and a late- to post-magmatic fluid phase. Samples of the fluid phase are isolated at experimental run conditions as synthetic fluid in quartz. Individual fluid inclusions are later analyzed for dissolved metals using Proton Induced X-ray Emission (PIXE). Back reactions between fluid and solid phases during quenching are prevented because the fluid is isolated at the experimental pressure, temperature ( P, T) conditions before quenching occurs. The technique is applied to study the partitioning of chalcophile elements (Fe, Ni, Cu, Pt and Au) between sulfide phases, metal alloys and supercritical SiO 2-NaCl-saturated H2O ± CH4- CO2- H2S fluids. Synthetic Ni-Cu-rich monosulfide solid solution (mss) doped with PtS or Au is packed in a quartz capsule and, together with a hydrogen buffer capsule and compounds to generate a fluid phase, welded shut in an outer Pt or Au metal capsule. The fluid phase is generated by combustion and reaction of various C-H-O fluid components during heating. Depending on capsule material and sample composition, the run products consist of platiniferous or auriferous mss, Pt-Fe, or ( Au, Cu) alloy phases, PtS, Fe 3O 4, sometimes a Cu-rich sulfide melt, and a fluid phase. Samples of the fluid are trapped in the walls of the quartz sample capsule as polyphase fluid inclusions. All phases are now available for analysis: fluid speciation is analyzed by piercing the outer metal capsule under vacuum and feeding the released fluid into a mass spectrometer. Phases and components within fluid inclusions are identified with Raman spectroscopy. Platinum and gold in solid solution in mss are determined with a CAMECA SX50 electron microanalyser. Metal contents trapped in selected fluid inclusions are determined quantitatively by in situ analysis with a proton microprobe using PIXE and a correction procedure specifically developed for quantitative fluid inclusion analysis. Initial results of metal solubilities in the fluid are as follows. Iron decreases from above 6,000 ppm under reduced conditions in the presence of H 2S in the fluid, to less than 1,000 ppm if hematite is stable in the crystalline run product. Copper and gold concentrations in the fluid range from about 600 to over 1200 and from 150 to about 270 ppm, respectively. The solubilities of these two metals in NaCl-saturated fluids are apparently independent of fluid speciations covered here. Nickel is mostly below detection limit (<10 ppm) and apparently poorly soluble in high-temperature fluid phases. Platinum concentrations in fluid inclusions are highly variable even among fluid inclusions of single runs, possibly because Pt tends to form multi-atom complexes in fluid phases.

Annotated checklist of the decapod crustaceans of the Gulf of Oman, northwestern Indian Ocean.

PubMed

Naderloo, Reza; Ebrahimnezhad, Saeed; Sari, Alireza

2015-10-09

The decapod crustaceans of the Gulf of Oman have been documented based on the published literature and new sampling along the Iranian coast between 2005 and 2015. A total of 121 species were collected along the Iranian coast, of which 43 are new records for the Gulf of Oman. The Decapoda of the Gulf is currently represented by 258 species belonging to five infraorders: Axiidea, Achelata, Anomura, Brachyura, and Caridea. Brachyura, with 176 species, are the best represented group, followed by Anomura and Caridea with 42 and 17 species, respectively. The least diverse groups are Achelata, with five species, and Axiidea, with three. On the basis of the available information, the northern (Iranian) coast with 189 species is more diverse than the southern (United Arab Emirates and Oman) coast with 134 species.

Comparative Assessment of Conventional Papanicolaou and Modified Ultrafast Papanicolaou Stains in Fine Needle Aspiration Samples and Body Fluids.

PubMed

Arul, P; Eniya, S; Pushparaj, Magesh; Masilamani, Suresh; Kanmani, P; Lingasamy, C

2018-01-01

Conventional Papanicolaou (Pap) stain has undergone many modifications; of these, ultrafast Pap stain is the most popular as it shortens the turnaround time of reporting. Application of modified ultrafast Pap (MUFP) stain in the evaluation of fine needle aspiration (FNA) samples and body fluids are scanty. To evaluate the utility of MUFP stain in various FNA samples and body fluids and compare the findings with those of conventional Pap stain. In this cross-sectional study, two wet-fixed and two airdried smears from each sample [301 samples (255 FNA samples and 46 body fluids)] were prepared and stained by the conventional Pap and MUFP stains, respectively. Concordant and discordant rate was calculated. Quality index (QI) of MUFP stain was assessed by background, overall staining, cell morphology, and nuclear characteristics. MUFP-stained smears were also categorized into excellent, good, and fair. The concordance rate for MUFP stain was 100%. QI of MUFP stain for breast, thyroid, lymph node, soft tissue, salivary gland, and body fluids was 0.9, 0.93, 0.95, 1, 0.94, and 1, respectively. Excellent quality of stain was noted in 53.2% and good in 24.6% of the cases allowing easy diagnosis. In 22.2% of fair cases, diagnosis was possible with some difficulties. Our study concluded that MUFP stain could be considered as a rapid and reliable diagnostic tool and can be applied on a regular basis in FNA samples and body fluids to offer immediate diagnosis. However, caution should be taken while reporting certain MUFP-stained smears to avoid over/under diagnosis.

Direct laboratory observation of fluid distribution and its influence on acoustic properties of patchy saturated rocks

NASA Astrophysics Data System (ADS)

Lebedev, M.; Clennell, B.; Pervukhina, M.; Shulakova, V.; Mueller, T.; Gurevich, B.

2009-04-01

Porous rocks in hydrocarbon reservoirs are often saturated with a mixture of two or more fluids. Interpretation of exploration seismograms requires understanding of the relationship between distribution of the fluids patches and acoustic properties of rocks. The sizes of patches as well as their distribution affect significantly the seismic response. If the size of the fluid patch is smaller than the diffusion wavelength then pressure equilibration is achieved and the bulk modulus of the rock saturated with a mixture is defined by the Gassmann equations (Gassmann, 1951) with the saturation-weighted average of the fluid bulk modulus given by Wood's law (Wood, 1955, Mavko et al., 1998). If the fluid patch size is much larger than the diffusion wavelength then there is no pressure communication between different patches. In this case, fluid-flow effects can be neglected and the overall rock may be considered equivalent to an elastic composite material consisting of homogeneous parts whose properties are given by Gassmann theory with Hill's equation for the bulk modulus (Hill, 1963, Mavko et al., 1998). At intermediate values of fluid saturation the velocity-saturation relationship is significantly affected by the fluid patch distribution. In order to get an improved understanding of factors influencing the patch distribution and the resulting seismic wave response we performed simultaneous measurements of P-wave velocities and rock sample CT imaging. The CT imaging allows us to map the fluid distribution inside rock sample during saturation (water imbibition). We compare the experimental results with theoretical predictions. In this paper we will present results of simultaneous measurements of longitudinal wave velocities and imaging mapping of fluid distribution inside rock sample during sample saturation. We will report results of two kinds of experiments: "dynamic" and "quasi static" saturation. In both experiments Casino Cores Otway Basin sandstone, Australia core samples (38 mm in diameter, approximately 60 mm long) were dried in oven under reduced pressure. In dynamic saturation experiments, samples were jacketed in the experimental cell, made from transparent for X-radiation material (PMMA). Distillate water was injected into the sample from the one side. Fluid distribution in such "dynamic" experiment: both spatial and time dependant was measured using X-ray Computer Tomograph (CT) with resolution 0.2 x 0.2 x 1 mm3. Velocities (Vp, and Vs) at ultrasonic frequency of 1 MHz, were measured in the direction perpendicular to initial direction of the fluid flow injection. Sample saturation was estimated from the CT results. In "quasi static" experiments samples were saturated during long period of time (over 2 weeks) to achieve uniform distribution of liquid inside the sample. Saturation was determined by measurement of the weight of water fraction. All experiments were performed at laboratory environments at temperature 25 C. Ultrasonic velocities and fluid saturations were measured simultaneously during water injection into sandstone core samples. The experimental results obtained on low-permeability samples show that at low saturation values the velocity-saturation dependence can be described by the Gassmann-Wood relationship. However, with increasing saturation a sharp increase of P-wave velocity is observed, eventually approaching the Gassmann-Hill relationship. We connect the characteristics of the transition behavior of the velocity-saturation relationships to the increasing size of the patches inside the rock sample. In particular, we show that for relatively large fluid injection rate this transition occurs at smaller degrees of saturation as compared with high injection rate. We model the experimental data using the so-called White model (Toms 2007) that assumes fluid patch distribution as a periodic assemblage of concentric spheres. We can observe reasonable agreement between experimental results and theoretical predictions of White's model. The results illustrate the non-unique relationships between saturation and velocity in sandstones dependent on texture and fluid displacement history: fuller understanding of these phenomena is needed for accurate assessment of time lapse seismic measurements, be they for oil and gas recovery or for CO2 disposal purposes. Gassmann, F., 1951, Elastic waves through a packing of spheres. Geophysics 16, 673-685; Mavko, G., T. Mukerji, and J. Dvorkin, 1998, The Rock Physics Handbook: Tools for seismic analysis in porous media: Cambridge University Press. Wood, A. W., 1955, A Textbook of Sound, The MacMillan Co., New York, 360 pp. Hill, R., 1963, Elastic properties of reinforced solids: some theoretical principles. J. Mech. Phys. Solids, 11, 357-372. Hill, R., 1952, The elastic behavior of crystalline aggregates. Proc. Physical Soc., London, A65, 349-354. J. Toms, T.M. Mueller, B. Gurevich, 2007 Seismic attenuation in porous rocks with random patchy saturation. Geophysical Prospecting, 55, 671-678.

Influence of Sampling on the Determination of Warfarin and Warfarin Alcohols in Oral Fluid

PubMed Central

Lomonaco, Tommaso; Ghimenti, Silvia; Piga, Isabella; Biagini, Denise; Onor, Massimo; Fuoco, Roger; Di Francesco, Fabio

2014-01-01

Background and Objective The determination of warfarin, RS/SR- and RR/SS-warfarin alcohols in oral fluid may offer additional information to the INR assay. This study aimed to establish an optimized sampling technique providing the best correlation between the oral fluid and the unbound plasma concentrations of these compounds. Materials and Methods Samples of non-stimulated and stimulated oral fluid, and blood were collected from 14 patients undergoing warfarin therapy. After acidification, analytes were extracted with a dichloromethane/hexane mixture and determined by HPLC with fluorescence detection. Plasma samples were also ultrafiltered for the determination of the unbound fraction. The chromatographic separation was carried out in isocratic conditions with a phosphate buffer/methanol mobile phase on a C-18 reversed-phase column. The absence of interfering compounds was verified by HPLC-ESI-Q-TOF. Results Stimulation generally increased the oral fluid pH to values close to blood pH in about 6 minutes. The concentration of warfarin and RS/SR-warfarin alcohols in oral fluid followed the same trend, whereas the concentration of RR/SS-warfarin alcohols was not affected. Six minute stimulation with chewing gum followed by collection with a polyester swab was the best sampling procedure, with a good repeatability (RSD <10%) and relatively low inter-subject variability (RSD  = 30%) of the oral fluid to plasma ratio. This procedure provided strong correlations between the measured oral fluid and unbound plasma concentration of warfarin (r  =  0.92, p <0.001) and RS/SR-warfarin alcohols (r  =  0.84, p <0.001), as well as between stimulated oral fluid and total plasma concentration of warfarin (r  =  0.78, p <0.001) and RS/SR-warfarin alcohols (r  =  0.81, p <0.001). Conclusion The very good correlation between oral fluid and unbound plasma concentration of warfarin and RS/SR-warfarin alcohols suggests that oral fluid analysis could provide clinically useful information for the monitoring of anticoagulant therapy, complementary to the INR assay. PMID:25478864

Detection time for THC in oral fluid after frequent cannabis smoking.

PubMed

Andås, Hilde T; Krabseth, Hege-Merete; Enger, Asle; Marcussen, Bjarne N; Haneborg, An-Magritt; Christophersen, Asbjørg S; Vindenes, Vigdis; Øiestad, Elisabeth L

2014-12-01

The use of oral fluid for detecting drugs of abuse has become increasingly more frequent. Few studies have, however, investigated the detection times for drugs of abuse in oral fluid, compared with that of in urine or in blood. Cannabis is the world's most widely used drug of abuse, and the detection times for cannabis, in different types of matrixes, are therefore important information to the laboratories or institutions performing and evaluating drugs of abuse analyses. It is well known that frequent use of high dosages of cannabis, for longer periods of time, might lead to prolonged detection times for THC-COOH in urine. Cannabis intake is detected in oral fluid as THC, and a positive finding is considered to be a result of recent smoking, although some studies have already reported longer detection times. The aim of this study was to investigate the detection time for THC in oral fluid, collected from drug addicts admitted for detoxification. Findings in oral fluid were compared with findings in urine, among 26 patients admitted to a closed detoxification unit. The study, being the first in doing so, describes the concentration-time profiles for THC in oral fluid among chronic cannabis users, during monitored abstinence, using the Intercept collection kit. The study also includes the concentration-time profiles for creatinine-corrected THC-COOH ratios in urine samples, included to monitor for the possibility of new intakes. THC was detected in oral fluid collected from 11 of the 26 patients in the study. The elimination curves for THC in oral fluid revealed that negative samples could be interspersed among positive samples several days after cessation, whereas the THC-COOH concentrations in urine were decreasing. THC was, in this study, detected in oral fluid for up to 8 days after admission. The study shows that frequent use of high dosages of cannabis may lead to prolonged detection times, and that positive samples can be interspersed among negative samples. These results are of great importance when THC results from oral fluid analyses are to be interpreted.

Nanopipettes: probes for local sample analysis.

PubMed

Saha-Shah, Anumita; Weber, Anna E; Karty, Jonathan A; Ray, Steven J; Hieftje, Gary M; Baker, Lane A

2015-06-01

Nanopipettes (pipettes with diameters <1 μm) were explored as pressure-driven fluid manipulation tools for sampling nanoliter volumes of fluids. The fundamental behavior of fluids confined in the narrow channels of the nanopipette shank was studied to optimize sampling volume and probe geometry. This method was utilized to collect nanoliter volumes (<10 nL) of sample from single Allium cepa cells and live Drosophila melanogaster first instar larvae. Matrix assisted laser desorption/ionization-mass spectrometry (MALDI-MS) was utilized to characterize the collected sample. The use of nanopipettes for surface sampling of mouse brain tissue sections was also explored. Lipid analyses were performed on mouse brain tissues with spatial resolution of sampling as small as 50 μm. Nanopipettes were shown to be a versatile tool that will find further application in studies of sample heterogeneity and population analysis for a wide range of samples.

46 CFR 160.055-7 - Sampling, tests, and inspections.

Code of Federal Regulations, 2011 CFR

2011-10-01

... 46 Shipping 6 2011-10-01 2011-10-01 false Sampling, tests, and inspections. 160.055-7 Section 160.055-7 Shipping COAST GUARD, DEPARTMENT OF HOMELAND SECURITY (CONTINUED) EQUIPMENT, CONSTRUCTION, AND... and Child, for Merchant Vessels § 160.055-7 Sampling, tests, and inspections. (a) Production tests and...

46 CFR 160.005-5 - Sampling, tests, and inspections.

Code of Federal Regulations, 2010 CFR

2010-10-01

... 46 Shipping 6 2010-10-01 2010-10-01 false Sampling, tests, and inspections. 160.005-5 Section 160.005-5 Shipping COAST GUARD, DEPARTMENT OF HOMELAND SECURITY (CONTINUED) EQUIPMENT, CONSTRUCTION, AND... (Jacket Type), Models 52 and 56 § 160.005-5 Sampling, tests, and inspections. (a) Production tests and...

46 CFR 160.055-7 - Sampling, tests, and inspections.

Code of Federal Regulations, 2010 CFR

2010-10-01

... 46 Shipping 6 2010-10-01 2010-10-01 false Sampling, tests, and inspections. 160.055-7 Section 160.055-7 Shipping COAST GUARD, DEPARTMENT OF HOMELAND SECURITY (CONTINUED) EQUIPMENT, CONSTRUCTION, AND... and Child, for Merchant Vessels § 160.055-7 Sampling, tests, and inspections. (a) Production tests and...

46 CFR 160.002-5 - Sampling, tests, and inspections.

Code of Federal Regulations, 2011 CFR

2011-10-01

... 46 Shipping 6 2011-10-01 2011-10-01 false Sampling, tests, and inspections. 160.002-5 Section 160.002-5 Shipping COAST GUARD, DEPARTMENT OF HOMELAND SECURITY (CONTINUED) EQUIPMENT, CONSTRUCTION, AND... Type), Models 3 and 5 § 160.002-5 Sampling, tests, and inspections. (a) Production tests and...

46 CFR 161.006-5 - Sampling, inspections and tests.

Code of Federal Regulations, 2011 CFR

2011-10-01

... 46 Shipping 6 2011-10-01 2011-10-01 false Sampling, inspections and tests. 161.006-5 Section 161.006-5 Shipping COAST GUARD, DEPARTMENT OF HOMELAND SECURITY (CONTINUED) EQUIPMENT, CONSTRUCTION, AND... Vessels § 161.006-5 Sampling, inspections and tests. (a) General. Motor lifeboat searchlights specified by...

46 CFR 160.002-5 - Sampling, tests, and inspections.

Code of Federal Regulations, 2010 CFR

2010-10-01

... 46 Shipping 6 2010-10-01 2010-10-01 false Sampling, tests, and inspections. 160.002-5 Section 160.002-5 Shipping COAST GUARD, DEPARTMENT OF HOMELAND SECURITY (CONTINUED) EQUIPMENT, CONSTRUCTION, AND... Type), Models 3 and 5 § 160.002-5 Sampling, tests, and inspections. (a) Production tests and...

46 CFR 161.006-5 - Sampling, inspections and tests.

Code of Federal Regulations, 2010 CFR

2010-10-01

... 46 Shipping 6 2010-10-01 2010-10-01 false Sampling, inspections and tests. 161.006-5 Section 161.006-5 Shipping COAST GUARD, DEPARTMENT OF HOMELAND SECURITY (CONTINUED) EQUIPMENT, CONSTRUCTION, AND... Vessels § 161.006-5 Sampling, inspections and tests. (a) General. Motor lifeboat searchlights specified by...

46 CFR 160.005-5 - Sampling, tests, and inspections.

Code of Federal Regulations, 2011 CFR

2011-10-01

... 46 Shipping 6 2011-10-01 2011-10-01 false Sampling, tests, and inspections. 160.005-5 Section 160.005-5 Shipping COAST GUARD, DEPARTMENT OF HOMELAND SECURITY (CONTINUED) EQUIPMENT, CONSTRUCTION, AND... (Jacket Type), Models 52 and 56 § 160.005-5 Sampling, tests, and inspections. (a) Production tests and...

A MORE COST-EFFECTIVE EMAP-ESTUARIES BENTHIC MACROFAUNAL SAMPLING PROTOCOL

EPA Science Inventory

The standard benthic macrofaunal sampling protocol in the U.S. Environmental Protection Agency's Pacific Coast Environmental Monitoring and Assessment Program (EMAP) is to collect a minimum of 30 random benthic samples per reporting unit (e.g., estuary) using a 0.1 m2 grab and to...

Detection of influenza A virus nucleoprotein antibodies in oral fluid specimens from pigs infected under experimental conditions using a blocking ELISA.

PubMed

Panyasing, Y; Goodell, C K; Wang, C; Kittawornrat, A; Prickett, J R; Schwartz, K J; Ballagi, A; Lizano, S; Zimmerman, J J

2014-04-01

In commercial swine populations, influenza is an important component of the porcine respiratory disease complex (PRDC) and a pathogen with major economic impact. Previously, a commercial blocking ELISA (FlockChek(™) Avian Influenza Virus MultiS-Screen(®) Antibody Test Kit, IDEXX Laboratories, Inc., Westbrook, ME, USA) designed to detect influenza A nucleoprotein (NP) antibodies in avian serum was shown to accurately detect NP antibodies in swine serum. The purpose of this study was to determine whether this assay could detect NP antibodies in swine oral fluid samples. Initially, the procedure for performing the NP-blocking ELISA on oral fluid was modified from the serum testing protocol by changing sample dilution, sample volume, incubation time and incubation temperature. The detection of NP antibody was then evaluated using pen-based oral fluid samples (n = 182) from pigs inoculated with either influenza A virus subtype H1N1 or H3N2 under experimental conditions and followed for 42 days post inoculation (DPI). NP antibodies in oral fluid were detected from DPI 7 to 42 in all inoculated groups, that is, the mean sample-to-negative (S/N) ratio of influenza-inoculated pigs was significantly different (P < 0.0001) from uninoculated controls (unvaccinated or vaccinated-uninoculated groups) through this period. Oral fluid versus serum S/N ratios from the same pen showed a correlation of 0.796 (Pearson's correlation coefficient, P < 0.0001). The results showed that oral fluid samples from influenza virus-infected pigs contained detectable levels of NP antibodies for ≥42 DPI. Future research will be required to determine whether this approach could be used to monitor the circulation of influenza virus in commercial pig populations. © 2012 Blackwell Verlag GmbH.

POP levels in blue crab (Callinectes sapidus) and edible fish from the eastern Mediterranean coast.

PubMed

Tekin, Serkan; Pazi, Idil

2017-01-01

Organochlorinated pesticides and Aroclors were measured in the muscle of two edible fish species (gray mullet, sea bream) and blue crab, collected from eastern Mediterranean coast in 2013. The concentration of organochlorinated pesticides (OCPs) and Aroclors in biota samples which were collected at six sites ranged from 1.0-8.6 and 9-47.5 ng g -1 wet weight, respectively. Total DDT concentrations in seafood samples were compared to tolerance level established by the US Food and Drug Administration (FDA); the concentrations were detected below the tolerence level. Health risk assessment was conducted related to the consumption of chemically contaminated seafood. The estimated daily intake of OCPs calculated by using the estimated daily fish consumption in Turkey was far below the acceptable daily intake as established by FAO/WHO. Our data indicated that consumption of blue crab, gray mullet, and sea bream collected from the Mediterranean coast of Turkey could pose "no risk" for human health in terms of OCPs.

Avian influenza virus antibodies in Pacific Coast Red Knots (Calidris canutus rufa)

USGS Publications Warehouse

Johnson, James A.; DeCicco, Lucas H.; Ruthrauff, Daniel R.; Krauss, Scott; Hall, Jeffrey S.

2014-01-01

Prevalence of avian influenza virus (AIV) antibodies in the western Atlantic subspecies of Red Knot (Calidris canutus rufa) is among the highest for any shorebird. To assess whether the frequency of detection of AIV antibodies is high for the species in general or restricted only to C. c. rufa, we sampled the northeastern Pacific Coast subspecies of Red Knot (Calidris canutus roselaari) breeding in northwestern Alaska. Antibodies were detected in 90% of adults and none of the chicks sampled. Viral shedding was not detected in adults or chicks. These results suggest a predisposition of Red Knots to AIV infection. High antibody titers to subtypes H3 and H4 were detected, whereas low to intermediate antibody levels were found for subtypes H10 and H11. These four subtypes have previously been detected in shorebirds at Delaware Bay (at the border of New Jersey and Delaware) and in waterfowl along the Pacific Coast of North America.

Natural radionuclides tracing in marine surface waters along the northern coast of Oman Sea by combining the radioactivity analysis, oceanic currents and the SWAN model results.

PubMed

Zare, Mohammad Reza; Mostajaboddavati, Mojtaba; Kamali, Mahdi; Tari, Marziyeh; Mosayebi, Sanaz; Mortazavi, Mohammad Seddigh

2015-03-15

This study aims to establish a managed sampling plan for rapid estimate of natural radio-nuclides diffusion in the northern coast of the Oman Sea. First, the natural radioactivity analysis in 36 high volume surface water samples was carried out using a portable high-resolution gamma-ray spectrometry. Second, the oceanic currents in the northern coast were investigated. Then, the third generation spectral SWAN model was utilized to simulate wave parameters. Direction of natural radioactivity propagation was coupled with the preferable wave vectors and oceanic currents direction that face to any marine pollution, these last two factors will contribute to increase or decrease of pollution in each grid. The results were indicated that the natural radioactivity concentration between the grids 8600 and 8604 is gathered in the grid 8600 and between the grids 8605 and 8608 is propagated toward middle part of Oman Sea. Copyright © 2014 Elsevier Ltd. All rights reserved.

Exposure of fluid milk to LED light negatively affects consumer perception and alters underlying sensory properties.

PubMed

Martin, Nicole; Carey, Nancy; Murphy, Steven; Kent, David; Bang, Jae; Stubbs, Tim; Wiedmann, Martin; Dando, Robin

2016-06-01

Fluid milk consumption per capita in the United States has been steadily declining since the 1940s. Many factors have contributed to this decline, including the increasing consumption of carbonated beverages and bottled water. To meet the challenge of stemming the decline in consumption of fluid milk, the dairy industry must take a systematic approach to identifying and correcting for factors that negatively affect consumers' perception of fluid milk quality. To that end, samples of fluid milk were evaluated to identify factors, with a particular focus on light-emitting diode (LED) light exposure, which negatively affect the perceived sensory quality of milk, and to quantify their relative effect on the consumer's experience. Fluid milk samples were sourced from 3 processing facilities with varying microbial postprocessing contamination patterns based on historical testing. The effect of fat content, light exposure, age, and microbiological content were assayed across 23 samples of fluid milk, via consumer, descriptive sensory, and instrumental analyses. Most notably, light exposure resulted in a broad negative reaction from consumers, more so than samples with microbiological contamination exceeding 20,000 cfu/mL on days approaching code. The predominant implication of the study is that a component of paramount importance in ensuring the success of the dairy industry would be to protect fluid milk from all sources of light exposure, from processing plant to consumer. Copyright © 2016 American Dairy Science Association. Published by Elsevier Inc. All rights reserved.

Segmentation of plate coupling, fate of subduction fluids, and modes of arc magmatism in Cascadia, inferred from magnetotelluric resistivity

USGS Publications Warehouse

Wannamaker, Philip E.; Evans, Rob L.; Bedrosian, Paul A.; Unsworth, Martyn J.; Maris, Virginie; McGary, R. Shane

2014-01-01

Five magnetotelluric (MT) profiles have been acquired across the Cascadia subduction system and transformed using 2-D and 3-D nonlinear inversion to yield electrical resistivity cross sections to depths of ∼200 km. Distinct changes in plate coupling, subduction fluid evolution, and modes of arc magmatism along the length of Cascadia are clearly expressed in the resistivity structure. Relatively high resistivities under the coasts of northern and southern Cascadia correlate with elevated degrees of inferred plate locking, and suggest fluid- and sediment-deficient conditions. In contrast, the north-central Oregon coastal structure is quite conductive from the plate interface to shallow depths offshore, correlating with poor plate locking and the possible presence of subducted sediments. Low-resistivity fluidized zones develop at slab depths of 35–40 km starting ∼100 km west of the arc on all profiles, and are interpreted to represent prograde metamorphic fluid release from the subducting slab. The fluids rise to forearc Moho levels, and sometimes shallower, as the arc is approached. The zones begin close to clusters of low-frequency earthquakes, suggesting fluid controls on the transition to steady sliding. Under the northern and southern Cascadia arc segments, low upper mantle resistivities are consistent with flux melting above the slab plus possible deep convective backarc upwelling toward the arc. In central Cascadia, extensional deformation is interpreted to segregate upper mantle melts leading to underplating and low resistivities at Moho to lower crustal levels below the arc and nearby backarc. The low- to high-temperature mantle wedge transition lies slightly trenchward of the arc.

Using CHEMTAX to evaluate seasonal and interannual dynamics of the phytoplankton community off the South-west coast of Portugal

NASA Astrophysics Data System (ADS)

Goela, P. C.; Danchenko, S.; Icely, J. D.; Lubian, L. M.; Cristina, S.; Newton, A.

2014-12-01

CHEMTAX was used to assess the relative contribution of the main phytoplankton classes to the total concentration of Chlorophyll a (Chl a) from the waters off SW coast of Portugal. Sampling campaigns were carried out during all seasons from 2008 to 2012, at three stations located 2, 10 and 18 km from the coast. Samples were taken from the surface, mid-Secchi and Secchi depth, for the determination of Chl a and other phytoplanktonic pigments by HPLC. Supporting data were also obtained including dissolved inorganic nutrients, salinity, transparency, temperature and upwelling indices. The CHEMTAX results were also related to microscopy counts and also spectral analysis of absorption of other samples from the same sampling campaigns. The pigment results showed that diatoms dominated from early spring to summer, coinciding with upwelling conditions, while cryptophytes, prymnesiophytes and prasinophytes dominated in autumn and winter, coinciding with seasonal stratification. Although the contribution of cyanobacteria to total Chl a was generally low, there were occasional sampling campaigns where it was exceptionally high, but these appeared not to be related to upwelling. Dinoflagellates and chrysophytes were minority groups although the pigment marker peridinin that was used to distinguish dinoflagellates was not adequate for distinguishing all the members of this group. CHEMTAX was particularly useful for discriminating between the smaller (0-20 μm) classes of the microplankton that could not be easily identified by microscopy.

Rare earth element behavior during groundwater – seawater mixing along the Kona Coast of Hawaii

USGS Publications Warehouse

Johannesson, Karen H.; Palmore, C. Dianne; Fackrell, Joseph; Prouty, Nancy G.; Swarzenski, Peter W.; Chevis, Darren A.; Telfeyan, Katherine; White, Christopher D.; Burdige, David J.

2017-01-01

Groundwater and seawater samples were collected from nearshore wells and offshore along the Kona Coast of the Big Island of Hawaii to investigate rare earth element (REE) behavior in local subterranean estuaries. Previous investigations showed that submarine groundwater discharge (SGD) is the predominant flux of terrestrial waters to the coastal ocean along the arid Kona Coast of Hawaii. Groundwater and seawater samples were filtered through 0.45 μm and 0.02 μm pore-size filters to evaluate the importance of colloidal and soluble (i.e., truly dissolved ionic species and/or low molecular weight [LMW] colloids) fractions of the REEs in the local subterranean estuaries. Mixing experiments using groundwater collected immediately down gradient from a wastewater treatment facility (WWTF) proximal to the Kaloko-Hanokohau National Historic Park, and more “pristine” groundwater from a well constructed in a lava tube at Kiholo Bay, were mixed with local seawater to study the effect of solution composition (i.e., pH, salinity) on the concentrations and fractionation behavior of the REEs as groundwater mixes with seawater in Kona Coast subterranean estuaries. The mixed waters were also filtered through 0.45 or 0.02 μm filters to ascertain the behavior of colloidal and soluble fractions of the REEs across the salinity gradient in each mixing experiment. Concentrations of the REEs were statistically identical (two-tailed Student t-test, 95% confidence) between the sequentially filtered sample aliquots, indicating that the REEs occur as dissolved ionic species and/or LMW colloids in Kona Coast groundwaters. The mixing experiments revealed that the REEs are released to solution from suspended particles or colloids when Kona Coast groundwater waters mix with local seawater. The order of release that accompanies increasing pH and salinity follows light REE (LREE) > middle REE (MREE) > heavy REE (HREE). Release of REEs in the mixing experiments is driven by decreases in the free metal ion activity in solution and the concomitant increase in the amount of each REE that occurs in solution as dicarbonato complexes [i.e., Ln(CO3)2-] as pH increases across the salinity gradient. Input-normalized REE patterns of Kona Coast groundwater and coastal seawater are nearly identical and relatively flat compared to North Pacific seawater, indicating that SGD is the chief source of these trace elements to the ocean along the Kona Coast. Additionally, REE concentrations of the coastal seawater are between 10 and 50 times higher than previously reported open-ocean seawater values from the North Pacific, further demonstrating the importance of SGD fluxes of REEs to these coastal waters. Taken together, these observations indicate that large-scale removal of REEs, which characterizes the behavior of REEs in the low salinity reaches of many surface estuaries, is not a feature of the subterranean estuary along the Kona Coast. A large positive gadolinium (Gd) anomaly characterizes groundwater from the vicinity of the WWTF. The positive Gd anomaly can be traced to the coastal ocean, providing further evidence of the impact of SGD on the coastal waters. Estimates of the SGD fluxes of the REEs to the coastal ocean along the Kona Coast (i.e., 1.3 – 2.6 mmol Nd day-1) are similar to recent estimates of SGD fluxes of REEs along Florida’s east coast and to Rhode Island Sound, all of which points to the importance of SGD as significant flux of REEs to the coastal ocean.

Rare earth element behavior during groundwater–seawater mixing along the Kona Coast of Hawaii

DOE PAGES

Johannesson, Karen H.; Palmore, C. Dianne; Fackrell, Joseph; ...

2016-11-14

Groundwater and seawater samples were collected from nearshore wells and offshore along the Kona Coast of the Big Island of Hawaii to investigate rare earth element (REE) behavior in local subterranean estuaries. Previously we saw that submarine groundwater discharge (SGD) is the predominant flux of terrestrial waters to the coastal ocean along the arid Kona Coast of Hawaii. Groundwater and seawater samples were filtered through 0.45 μm and 0.02 μm pore-size filters to evaluate the importance of colloidal and soluble (i.e., truly dissolved ionic species and/or low molecular weight [LMW] colloids) fractions of the REEs in the local subterranean estuaries.more » Mixing experiments using groundwater collected immediately down gradient from a wastewater treatment facility (WWTF) proximal to the Kaloko-Hanokohau National Historic Park, and more “pristine” groundwater from a well constructed in a lava tube at Kiholo Bay, were conducted with local seawater to study the effect of solution composition (i.e., pH, salinity) on the concentrations and fractionation behavior of the REEs as groundwater mixes with seawater in Kona Coast subterranean estuaries. The mixed waters were also filtered through 0.45 or 0.02 μm filters to ascertain the behavior of colloidal and soluble fractions of the REEs across the salinity gradient in each mixing experiment. Concentrations of the REEs were statistically identical (two-tailed Student t-test, 95% confidence) between the sequentially filtered sample aliquots, indicating that the REEs occur as dissolved ionic species and/or LMW colloids in Kona Coast groundwaters. The mixing experiments revealed that the REEs are released to solution from suspended particles or colloids when Kona Coast groundwater waters mix with local seawater. The order of release that accompanies increasing pH and salinity follows light REE (LREE) > middle REE (MREE) > heavy REE (HREE). Release of REEs in the mixing experiments is driven by decreases in the free metal ion activity in solution and the concomitant increase in the amount of each REE that occurs in solution as dicarbonato complexes [i.e., Ln(CO 3) 2 -] as pH increases across the salinity gradient. Input-normalized REE patterns of Kona Coast groundwater and coastal seawater are nearly identical and relatively flat compared to North Pacific seawater, indicating that SGD is the chief source of these trace elements to the ocean along the Kona Coast. Additionally, REE concentrations of the coastal seawater are between 10 and 50 times higher than previously reported open-ocean seawater values from the North Pacific, further demonstrating the importance of SGD fluxes of REEs to these coastal waters. Altogether, these observations indicate that large-scale removal of REEs, which characterizes the behavior of REEs in the low salinity reaches of many surface estuaries, is not a feature of the subterranean estuary along the Kona Coast. A large positive gadolinium (Gd) anomaly characterizes groundwater from the vicinity of the WWTF. The positive Gd anomaly can be traced to the coastal ocean, providing further evidence of the impact of SGD on the coastal waters. Estimates of the SGD fluxes of the REEs to the coastal ocean along the Kona Coast (i.e., 1.3–2.6 mmol Nd day -1) are similar to recent estimates of SGD fluxes of REEs along Florida’s east coast and to Rhode Island Sound, all of which points to the importance of SGD as significant flux of REEs to the coastal ocean.« less

Rare earth element behavior during groundwater–seawater mixing along the Kona Coast of Hawaii

DOE Office of Scientific and Technical Information (OSTI.GOV)

Johannesson, Karen H.; Palmore, C. Dianne; Fackrell, Joseph

Groundwater and seawater samples were collected from nearshore wells and offshore along the Kona Coast of the Big Island of Hawaii to investigate rare earth element (REE) behavior in local subterranean estuaries. Previously we saw that submarine groundwater discharge (SGD) is the predominant flux of terrestrial waters to the coastal ocean along the arid Kona Coast of Hawaii. Groundwater and seawater samples were filtered through 0.45 μm and 0.02 μm pore-size filters to evaluate the importance of colloidal and soluble (i.e., truly dissolved ionic species and/or low molecular weight [LMW] colloids) fractions of the REEs in the local subterranean estuaries.more » Mixing experiments using groundwater collected immediately down gradient from a wastewater treatment facility (WWTF) proximal to the Kaloko-Hanokohau National Historic Park, and more “pristine” groundwater from a well constructed in a lava tube at Kiholo Bay, were conducted with local seawater to study the effect of solution composition (i.e., pH, salinity) on the concentrations and fractionation behavior of the REEs as groundwater mixes with seawater in Kona Coast subterranean estuaries. The mixed waters were also filtered through 0.45 or 0.02 μm filters to ascertain the behavior of colloidal and soluble fractions of the REEs across the salinity gradient in each mixing experiment. Concentrations of the REEs were statistically identical (two-tailed Student t-test, 95% confidence) between the sequentially filtered sample aliquots, indicating that the REEs occur as dissolved ionic species and/or LMW colloids in Kona Coast groundwaters. The mixing experiments revealed that the REEs are released to solution from suspended particles or colloids when Kona Coast groundwater waters mix with local seawater. The order of release that accompanies increasing pH and salinity follows light REE (LREE) > middle REE (MREE) > heavy REE (HREE). Release of REEs in the mixing experiments is driven by decreases in the free metal ion activity in solution and the concomitant increase in the amount of each REE that occurs in solution as dicarbonato complexes [i.e., Ln(CO 3) 2 -] as pH increases across the salinity gradient. Input-normalized REE patterns of Kona Coast groundwater and coastal seawater are nearly identical and relatively flat compared to North Pacific seawater, indicating that SGD is the chief source of these trace elements to the ocean along the Kona Coast. Additionally, REE concentrations of the coastal seawater are between 10 and 50 times higher than previously reported open-ocean seawater values from the North Pacific, further demonstrating the importance of SGD fluxes of REEs to these coastal waters. Altogether, these observations indicate that large-scale removal of REEs, which characterizes the behavior of REEs in the low salinity reaches of many surface estuaries, is not a feature of the subterranean estuary along the Kona Coast. A large positive gadolinium (Gd) anomaly characterizes groundwater from the vicinity of the WWTF. The positive Gd anomaly can be traced to the coastal ocean, providing further evidence of the impact of SGD on the coastal waters. Estimates of the SGD fluxes of the REEs to the coastal ocean along the Kona Coast (i.e., 1.3–2.6 mmol Nd day -1) are similar to recent estimates of SGD fluxes of REEs along Florida’s east coast and to Rhode Island Sound, all of which points to the importance of SGD as significant flux of REEs to the coastal ocean.« less

76 FR 11334 - Safety Zone; Soil Sampling; Chicago River, Chicago, IL

Federal Register 2010, 2011, 2012, 2013, 2014

2011-03-02

...-AA00 Safety Zone; Soil Sampling; Chicago River, Chicago, IL AGENCY: Coast Guard, DHS. ACTION: Temporary... North Branch of the Chicago River due to soil sampling in this area. This temporary safety zone is... soil sampling efforts. DATES: This rule is effective from 7 a.m. on March 1, 2011, until 5 p.m. on...

46 CFR 153.935a - Storage of cargo samples.

Code of Federal Regulations, 2014 CFR

2014-10-01

... 46 Shipping 5 2014-10-01 2014-10-01 false Storage of cargo samples. 153.935a Section 153.935a Shipping COAST GUARD, DEPARTMENT OF HOMELAND SECURITY (CONTINUED) CERTAIN BULK DANGEROUS CARGOES SHIPS... § 153.935a Storage of cargo samples. (a) The master shall make sure that any cargo samples are stored in...

The effect of the pore-fluid factor on strength and failure mechanism of Wilkeson sandstone

NASA Astrophysics Data System (ADS)

Kätker, A. K.; Rempe, M.; Renner, J.

2016-12-01

The effective stress law, σn,eff = σn - αpf, is a central tool in analysing phenomena related to hydromechanical coupling, such as fluid-induced seismicity or aftershock activity. The effective-stress coefficient α assumes different values for specific physical properties and may deviate from 1. The limited number of studies suggest that brittle compressive strength obeys an effective-stress law when effective drainage is achieved. Yet, open questions remain regarding, e.g., the role of the loading path. We performed suites of triaxial compression tests on samples of Wilkeson sandstone at a range of pore-fluid pressures but identical effective confining pressure (60, 100, and 120 MPa) maintaining the pore-fluid factor λ = pf / pc constant (0.05, 0.2, 0.4, 0.55) during the isostatic loading stage to ensure uniform loading paths. Samples were shortened with a strain rate of 4×10-7 s-1 yielding drained conditions. All tests were terminated at a total axial strain of 4.5% for comparability of microstructures. The tests also included continuous permeability determination and ultrasonic p-wave-velocity measurements to monitor microstructural evolution. Results from experiments conducted at peff = 100 MPa show that dry samples exhibit a higher peak strength and brittle failure while water-saturated samples tend to deform at lower stress by cataclastic flow indicating physico-chemical weakening. Regardless of pore-fluid factor, the saturated experiments exhibit similar peak and residual strength. Differences in failure mechanism (degree of macroscopic localization) and volumetric strain evolution are however noticed, albeit without systematic relation to pore-fluid factor. Microstructure analyses by optical and scanning electron microscopy revealed an evolution from localized shear zones in dry experiments and experiments with a low pore-fluid factor to rather distributed cataclastic flow for experiments with high pore fluid factors. Yet, mechanical and structural differences observed so far may result from sample-to-sample variability and the proximity of the experimental conditions to the brittle-ductile transition.

The Evolving Medical and Veterinary Importance of the Gulf Coast tick (Acari: Ixodidae).

PubMed

Paddock, Christopher D; Goddard, Jerome

2015-03-01

Amblyomma maculatum Koch (the Gulf Coast tick) is a three-host, ixodid tick that is distributed throughout much of the southeastern and south-central United States, as well as several countries throughout Central and South America. A considerable amount of scientific literature followed the original description of A. maculatum in 1844; nonetheless, the Gulf Coast tick was not recognized as a vector of any known pathogen of animals or humans for >150 years. It is now identified as the principal vector of Hepatozoon americanum, the agent responsible for American canine hepatozoonosis, and Rickettsia parkeri, the cause of an emerging, eschar-associated spotted fever group rickettsiosis identified throughout much of the Western Hemisphere. Coincident with these discoveries has been recognition that the geographical distribution of A. maculatum in the United States is far more extensive than described 70 yr ago, supporting the idea that range and abundance of certain tick species, particularly those with diverse host preferences, are not fixed in time or space, and may change over relatively short intervals. Renewed interest in the Gulf Coast tick reinforces the notion that the perceived importance of a particular tick species to human or animal health can be relatively fluid, and may shift dramatically with changes in the distribution and abundance of the arthropod, its vertebrate hosts, or the microbial agents that transit among these organisms. Published by Oxford University Press on behalf of Entomological Society of America 2015. This work is written by US Government employees and is in the public domain in the US.

Monitoring 137Cs and 134Cs at marine coasts in Indonesia between 2011 and 2013.

PubMed

Suseno, Heny; Prihatiningsih, Wahyu Retno

2014-11-15

Environmental samples (seawater, sediments and biota) were collected along the eastern and western Indonesian coasts between 2011 and 2013 to anticipate the possible impacts of the Fukushima radioactive releases in Indonesia. On the eastern coasts (south and north Sulawesi), the (137)Cs concentrations in the seawater and sediments were 0.12-0.32 Bq m(-3) and 0.10-1.03 Bq kg(-1), respectively. On the western coasts (West Sumatra, Bangka Island, North Java, South Java and Madura island), the (137)Cs concentrations in the seawater and sediments were 0.12-0.66 Bq m(-3) and 0.19-1.64 Bq kg(-1), respectively. In general, the (137)Cs concentrations in the fish from several Indonesian coasts were

COLDEX-86: Fluid and Electrolyte Changes during Prolonged Cold Water Immersion

DTIC Science & Technology

1990-12-01

4 Urine and blood collections .................. ..................... 5 Sample processing and biochemical analyses...and decaffeinated tea and coffee. Ingestion of fluids was encouraged. After completing the immersion, 16 oz of warm apple or cranberry juice was...day. Sample processing and biochemical analyses. Blood samples (25 ml) were drawn from an antecubital vein with minimum stasis. Each sample was divided

Extended Detection of Amphetamine and Methamphetamine in Oral Fluid.

PubMed

Andås, Hilde T; Enger, Asle; Øiestad, Åse Marit L; Vindenes, Vigdis; Christophersen, Asbjørg S; Huestis, Marilyn A; Øiestad, Elisabeth L

2016-02-01

Amphetamine and methamphetamine are popular drugs of abuse worldwide and are important components of drug monitoring programs. Windows of detection for amphetamine and methamphetamine in oral fluid after high doses have not been investigated. Repeated high-dose ingestions are likely to cause positive samples for extended periods. Common routes of administration of amphetamine/methamphetamine in Norway are oral intake or injection. The aim of this study was to investigate windows of detection for amphetamine and methamphetamine in oral fluid from drug addicts under sustained abstinence during detoxification. Twenty-five patients admitted to a closed detoxification unit were included in this study. Oral fluid samples were collected daily in the morning and evening, and urine every morning for 10 days. A blood sample was drawn during the first 5 days after admission if the patient consented. Oral fluid results were compared with urine results to determine whether a new ingestion occurred. Oral fluid was collected with the Intercept oral fluid collection device. In-house cutoff concentrations for amphetamine and methamphetamine were 6.8 and 7.5 mcg/L, respectively, in oral fluid, and 135 and 149 mcg/L, respectively, in urine. Amphetamines were detected in 11 oral fluid, 5 urine, and 2 blood specimens from 25 patients. Patients self-reported amphetamines intake of up to 0.5-2 g daily. Windows of detection for amphetamine and methamphetamine in oral fluid were up to 8 days, longer than in urine at the applied cutoff values. These data confirm that oral fluid is a viable alternative to urine for monitoring amphetamine abuse, and that these substances might be detected in oral fluid for at least 1 week after ingestion of high doses. Such long detection times were, as far as we are aware, never reported previously for oral fluid amphetamines.

Forensic discrimination of vaginal epithelia by DNA methylation analysis through pyrosequencing.

PubMed

Antunes, Joana; Silva, Deborah S B S; Balamurugan, Kuppareddi; Duncan, George; Alho, Clarice S; McCord, Bruce

2016-10-01

The accurate identification of body fluids from crime scenes can aid in the discrimination between criminal and innocent intent. This research aimed to determine if the levels of DNA methylation in the locus PFN3A could be used to discriminate vaginal epithelia from other body fluids. In this work we bisulfite-modified and amplified DNA samples from blood, saliva, semen, and vaginal epithelia using primers for PFN3A. Through pyrosequencing we were able to show that vaginal epithelia present distinct methylation levels when compared to other body fluids. Mixtures of different body fluids present methylation values that correlate with single-source body fluid samples and the primers for PFN3A are specific for primates. This report successfully demonstrated that the analysis of methylation in the PFN3A locus can be used for vaginal epithelia discrimination in forensic samples. © 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Electromagnetic imaging the of the Pacific-North American plate boundary in central California, USA

NASA Astrophysics Data System (ADS)

Wheelock, B. D.; Constable, S.; Key, K. W.

2010-12-01

The continental margin of central California lies adjacent to a segment of the San Andreas fault (SAF) that exhibits a transition between locked behavior south of the town of Cholame, and freely slipping (creeping) behavior north of the town of Parkfield. Recent reports of non-volcanic tremor (NVT) near the town of Cholame represent the first observation of NVT in a strike-slip environment. Dense clusters of tremor episodes located at the northern limit of the locked section of the SAF were found to originate within the ductile lower crust at depths between 15 and 30~km, and have been interpreted as evidence of high pore fluid pressure. An excess of fluids in this region is likely given its history of subduction, which transports large quantities of water into the forearc crust and mantle. We present a study that uses deep electromagnetic imaging methods to estimate the abundance and distribution of pore fluids at depths associated with non-volcanic tremor. This study extends a previously collected terrestrial profile of magnetotelluric (MT) data (Becken et al. 2008, Geophysical Journal International) into the offshore environment. We deployed 21 seafloor instruments that collected controlled-source electromagnetic (CSEM) and MT data in a line extending from the coast near Morro Bay, across the continental shelf, and out onto the Pacific plate. The marine MT data results in apparent resistivity and phase estimates at periods between 1~s and 20,000~s, sufficient for probing the upper 100~km of regional conductivity. A significant coast effect, marked by asymptotic behavior in the TE mode of the MT responses, is observed at the deep water sites. This necessitates accurate bathymetry modeling when inverting. The CSEM transmitter was towed by all receivers broadcasting a compact broadband binary waveform with a 0.25~Hz fundamental frequency. The controlled-source signal is observed above the noisefloor at source-receiver offsets up to 6~km, which provides constraints on the conductivity structure of the upper 3~km of the crust. By extending the preceding line of terrestrial MT measurements to the west, we are able to constrain any differences in crust and mantle conductivity associated with the transition across the continental boundary. Furthermore, we address whether the deeply-sourced fluids migrating into the root of the SAF identified in Becken et al. (2008) are related to the fossil subduction zone. Inversion of this combined data set aims to detect the source region of these deep fluids, put constraints on their abundance, and further reveal any pathways by which they may reach the San Andreas fault.

Calibrating Geochemical Proxies in an Aragonite Stalagmite from the West Coast of India

NASA Astrophysics Data System (ADS)

Kaushal, N.; Henderson, G. M.; Yadava, M. G.; Ramesh, R.

2016-12-01

The Indian Monsoon is a major component of the global climatic system. Reconstruction of its past behaviour from stalagmites could be a powerful approach to understand its operation in varied climate states. Such records from the west coast would be valuable for the information they might impart about rainfall intensity and composition as air-masses first move onto the continent from the Arabian Sea, providing important constraints for other sites further inland. Carbonate rocks are sparse on the west coast, however, limiting availability of potential stalagmite sites. Here we report δ18O, δ13C and trace element analyses on the only stalagmite so far reported from the west coast. The sample grew from 1666 to 1997 AD in north Karnataka and is formed of aragonite, rather than calcite which is more commonly used for speleothem paleoclimate reconstruction. We aim to assess the use of aragonite geochemistry for paleoclimate reconstruction in general, and the rainfall at this particular site. Findings include: 1) Carbonate forming in the cave today appears to be in oxygen-isotope equilibrium, but the stalagmite has a kinetic overprint which is influenced by the slope of the growing surface of the sample. This local control on δ18O makes its use for reconstruction challenging. 2) Trace element measurements may provide more robust indicators of local paleoclimate. 3) High resolution sampling of 11 annual growth layers capture a strong seasonal record controlled by prior aragonite precipitation (PAP). PAP, similar to PCP, is a promising proxy for seasonal dryness or seasonal change in the partial pressure of carbon dioxide in this cave.

Temporal variations in (134)Cs and (137)Cs concentrations in seawater along the Shimokita Peninsula and the northern Sanriku coast in northeastern Japan, one year after the Fukushima Dai-ichi Nuclear Power Plant accident.

PubMed

Kofuji, Hisaki; Inoue, Mutsuo

2013-10-01

Ninety-six seawater samples were collected between May 2011 and March 2012 at 6 sites along the Shimokita Peninsula and the northern Sanriku coast, 250-450 km north of the Fukushima Dai-ichi Nuclear Power Plant (FDNPP). Cesium-134 and (137)Cs concentrations were determined by low-background γ-spectrometry. During May-June 2011, (134)Cs and (137)Cs concentrations in surface waters decreased from 1.0-2.8 to 0.7-1.5 mBq/L and from 2.1-3.9 to 1.9-3.0 mBq/L, respectively. These decreases were due to diffusion and advection in the ocean after atmospheric input of the FDNPP-derived radionuclides. However, in July-August 2011, the concentrations of both radionuclides in the water samples collected on the Pacific side of the Shimokita Peninsula and the northern Sanriku coast exhibited 30-50-fold increases (∼40 mBq/L for (134)Cs and ∼50 mBq/L for (137)Cs) over concentrations observed at these sampling sites in June 2011 in contrast to the gradual decreases in the concentrations on the Tsugaru Strait side of the Shimokita Peninsula. These results suggest that radiocesium-contaminated waters offshore in the Pacific Ocean were transported to coastal regions along the Pacific side of the Shimokita Peninsula and the northern Sanriku coast by ocean currents. Copyright © 2013 Elsevier Ltd. All rights reserved.

EFFECT OF URICOSURIC DRUG ADMINISTRATION ON URIC ACID LEVELS IN UNSTIMULATED PAROTID FLUID.

DTIC Science & Technology

Parotid fluid was collected twice daily without exogenous stimulation from 6 healthy young adult males, both before and during a 5-day period of...was found in parotid fluid uric acid concentration and uric acid secretion rate. The mean for serum uric acid decreased from 5.40 to 2.06 mg./100 ml...and parotid fluid uric acid concentration fell from 10.16 to 4.23 mg./100 ml. (morning samples) and 7.29 to 3.90 mg./100 ml. (afternoon samples). (Author)

Sample processor for chemical analysis

NASA Technical Reports Server (NTRS)

Boettger, Heinz G. (Inventor)

1980-01-01

An apparatus is provided which can process numerous samples that must be chemically analyzed by the application of fluids such as liquid reagents, solvents and purge gases, as well as the application of dumps for receiving the applied fluid after they pass across the sample, in a manner that permits numerous samples to be processed in a relatively short time and with minimal manpower. The processor includes a rotor which can hold numerous cartridges containing inert or adsorbent material for holding samples, and a pair of stators on opposite sides of the rotor. The stators form stations spaced along the path of the cartridges which lie in the rotor, and each station can include an aperture in one stator through which a fluid can be applied to a cartridge resting at that station, and an aperture in the other stator which can receive the fluid which has passed through the cartridge. The stators are sealed to the ends of the cartridges lying on the rotor, to thereby isolate the stations from one another.

Goal-Directed Fluid Resuscitation Protocol Based on Arterial Waveform Analysis of Major Burn Patients in a Mass Burn Casualty.

PubMed

Chiao, Hao-Yu; Chou, Chang-Yi; Tzeng, Yuan-Sheng; Wang, Chih-Hsin; Chen, Shyi-Gen; Dai, Niann-Tzyy

2018-02-01

Adequate fluid titration during the initial resuscitation period of major burn patients is crucial. This study aimed to evaluate the feasibility and efficacy of a goal-directed fluid resuscitation protocol that used hourly urine output plus the arterial waveform analysis FloTrac (Edwards LifeSciences, Irvine, Calif) system for major burns to avoid fluid overload. We conducted a retrospective cohort study of 43 major burn patients at the Tri-Service General Hospital after the Formosa Fun Coast Dust Explosion on June 27, 2015. Because of the limited capacity of intensive care units (ICUs), 23 intubated patients were transferred from the burn wards or emergency department to the ICU within 24 hours. Fluid administration was adjusted to achieve a urine output of 30 to 50 mL/h, cardiac index greater than 2.5 L/min/m, and stroke volume variation (SVV) less than 12%. The hourly crystalloid fluid infusion rate was titrated based on SVV and hourly urine output. Of the 23 critically burned patients admitted to the ICU, 13 patients who followed the goal-directed fluid resuscitation protocol within 12 hours postburn were included in the analysis. The mean age (years) was 21.8, and the mean total body surface area (TBSA) burned (%) was 68.0. The mean Revised Baux score was 106.8. All patients sustained inhalation injury. The fluid volumes administered to patients in the first 24 hours and the second 24 hours (mL/kg/% total body surface area) were 3.62 ± 1.23 and 2.89 ± 0.79, respectively. The urine outputs in the first 24 hours and the second 24 hours (mL/kg/h) were 1.13 ± 0.66 and 1.53 ± 0.87, respectively. All patients achieved the established goals within 32 hours postburn. In-hospital mortality rate was 0%. The SVV-based goal-directed fluid resuscitation protocol leads to less unnecessary fluid administration during the early resuscitation phase. Clinicians can efficaciously manage the dynamic body fluid changes in major burn patients under the guidance of the protocol.

Eukaryote-Made Thermostable DNA Polymerase Enables Rapid PCR-Based Detection of Mycoplasma, Ureaplasma and Other Bacteria in the Amniotic Fluid of Preterm Labor Cases.

PubMed

Ueno, Tomohiro; Niimi, Hideki; Yoneda, Noriko; Yoneda, Satoshi; Mori, Masashi; Tabata, Homare; Minami, Hiroshi; Saito, Shigeru; Kitajima, Isao

2015-01-01

Intra-amniotic infection has long been recognized as the leading cause of preterm delivery. Microbial culture is the gold standard for the detection of intra-amniotic infection, but several days are required, and many bacterial species in the amniotic fluid are difficult to cultivate. We developed a novel nested-PCR-based assay for detecting Mycoplasma, Ureaplasma, other bacteria and fungi in amniotic fluid samples within three hours of sample collection. To detect prokaryotes, eukaryote-made thermostable DNA polymerase, which is free from bacterial DNA contamination, is used in combination with bacterial universal primers. In contrast, to detect eukaryotes, conventional bacterially-made thermostable DNA polymerase is used in combination with fungal universal primers. To assess the validity of the PCR assay, we compared the PCR and conventional culture results using 300 amniotic fluid samples. Based on the detection level (positive and negative), 93.3% (280/300) of Mycoplasma, 94.3% (283/300) of Ureaplasma, 89.3% (268/300) of other bacteria and 99.7% (299/300) of fungi matched the culture results. Meanwhile, concerning the detection of bacteria other than Mycoplasma and Ureaplasma, 228 samples were negative according to the PCR method, 98.2% (224/228) of which were also negative based on the culture method. Employing the devised primer sets, mixed amniotic fluid infections of Mycoplasma, Ureaplasma and/or other bacteria could be clearly distinguished. In addition, we also attempted to compare the relative abundance in 28 amniotic fluid samples with mixed infection, and judged dominance by comparing the Ct values of quantitative real-time PCR. We developed a novel PCR assay for the rapid detection of Mycoplasma, Ureaplasma, other bacteria and fungi in amniotic fluid samples. This assay can also be applied to accurately diagnose the absence of bacteria in samples. We believe that this assay will positively contribute to the treatment of intra-amniotic infection and the prevention of preterm delivery.

Eukaryote-Made Thermostable DNA Polymerase Enables Rapid PCR-Based Detection of Mycoplasma, Ureaplasma and Other Bacteria in the Amniotic Fluid of Preterm Labor Cases

PubMed Central

Yoneda, Noriko; Yoneda, Satoshi; Mori, Masashi; Tabata, Homare; Minami, Hiroshi; Saito, Shigeru; Kitajima, Isao

2015-01-01

Background Intra-amniotic infection has long been recognized as the leading cause of preterm delivery. Microbial culture is the gold standard for the detection of intra-amniotic infection, but several days are required, and many bacterial species in the amniotic fluid are difficult to cultivate. Methods We developed a novel nested-PCR-based assay for detecting Mycoplasma, Ureaplasma, other bacteria and fungi in amniotic fluid samples within three hours of sample collection. To detect prokaryotes, eukaryote-made thermostable DNA polymerase, which is free from bacterial DNA contamination, is used in combination with bacterial universal primers. In contrast, to detect eukaryotes, conventional bacterially-made thermostable DNA polymerase is used in combination with fungal universal primers. To assess the validity of the PCR assay, we compared the PCR and conventional culture results using 300 amniotic fluid samples. Results Based on the detection level (positive and negative), 93.3% (280/300) of Mycoplasma, 94.3% (283/300) of Ureaplasma, 89.3% (268/300) of other bacteria and 99.7% (299/300) of fungi matched the culture results. Meanwhile, concerning the detection of bacteria other than Mycoplasma and Ureaplasma, 228 samples were negative according to the PCR method, 98.2% (224/228) of which were also negative based on the culture method. Employing the devised primer sets, mixed amniotic fluid infections of Mycoplasma, Ureaplasma and/or other bacteria could be clearly distinguished. In addition, we also attempted to compare the relative abundance in 28 amniotic fluid samples with mixed infection, and judged dominance by comparing the Ct values of quantitative real-time PCR. Conclusions We developed a novel PCR assay for the rapid detection of Mycoplasma, Ureaplasma, other bacteria and fungi in amniotic fluid samples. This assay can also be applied to accurately diagnose the absence of bacteria in samples. We believe that this assay will positively contribute to the treatment of intra-amniotic infection and the prevention of preterm delivery. PMID:26042418

Monitoring Fluid Flow in Fractured Carbonate Rocks Using Seismic Measurements

NASA Astrophysics Data System (ADS)

Li, W.; Pyrak-Nolte, L. J.

2008-12-01

The physical properties of carbonate rock are strongly influenced by the rock fabric which depends on the depositional environment, diagenetic and tectonic processes. The most common form of heterogeneity is layering caused by a variation in porosity among layers and within layers. The variation in porosity among layers leads to anisotropic behavior in the hydraulic, mechanical and seismic properties of carbonate rocks. We present the results of a laboratory study to examine the effect of fabric-controlled layering on fluid flow and seismic wave propagation through intact and fractured carbonate rock. Experiments were performed on cubic samples of Austin Chalk Cordova Cream. Samples AC1, AC5 and AC6 are cubic samples that measure 100 mm on edge. The samples were sealed and contained three inlet and three outlet ports for fluid invasion experiments. Two orthogonal seismic arrays were used to record both compressional and shear wave transmission through intact and fractured samples. The arrays used piezoelectric contact transducers with a central frequency 1.0 MHz. Between the two arrays, sixteen sources and sixteen receivers were used. Seismic measurements were made on the samples as a function of stress and during fluid saturation. The location of the invading fluid front as a function of time was monitored by using the peak-to-peak amplitude of the transmitted signals. The front was assumed to be between a source-receiver pair when the signal amplitude decreased by 50% over the initial value. The hydraulic gradient was parallel and perpendicular to the layers for AC5 and AC6, respectively. Sample AC1 was fractured and flow ports were established on the edges of the fracture plane. The weakly directed fabric controlled the rate at which fluid flowed through the samples. From the seismic data on AC6, the fluid first spread vertically along a layer before flowing across the layers. For AC6, it took the fluid two and half hours to flow between the inlet and the outlet across the layers. However, for AC5, the water flowed quickly along the layers and crossed the entire sample in one and a half hours. From the seismic data on fractured sample AC1, the water initially took more than 15 hours to transverse the sample though portions of the fracture were invaded after two hours. No water was produced at the outlet over a 15 hour period. Upon inspection, chemical precipitation was observed along the fracture plane and fracture- matrix interaction controlled the saturation of the matrix. Seismic monitoring of the fluid-front during saturation indicates that fine bedding affects the hydraulic properties of the sample while geochemical interactions in fractures affect fracture-matrix communication. Acknowledgments: The authors wish to acknowledge support of this work by the Geosciences Research Program, Office of Basic Energy Sciences US Department of Energy (DEFG02-97ER14785 08) and by Exxon Mobil Upstream Research Company.

Optimization of MR fluid Yield stress using Taguchi Method and Response Surface Methodology Techniques

NASA Astrophysics Data System (ADS)

Mangal, S. K.; Sharma, Vivek

2018-02-01

Magneto rheological fluids belong to a class of smart materials whose rheological characteristics such as yield stress, viscosity etc. changes in the presence of applied magnetic field. In this paper, optimization of MR fluid constituents is obtained with on-state yield stress as response parameter. For this, 18 samples of MR fluids are prepared using L-18 Orthogonal Array. These samples are experimentally tested on a developed & fabricated electromagnet setup. It has been found that the yield stress of MR fluid mainly depends on the volume fraction of the iron particles and type of carrier fluid used in it. The optimal combination of the input parameters for the fluid are found to be as Mineral oil with a volume percentage of 67%, iron powder of 300 mesh size with a volume percentage of 32%, oleic acid with a volume percentage of 0.5% and tetra-methyl-ammonium-hydroxide with a volume percentage of 0.7%. This optimal combination of input parameters has given the on-state yield stress as 48.197 kPa numerically. An experimental confirmation test on the optimized MR fluid sample has been then carried out and the response parameter thus obtained has found matching quite well (less than 1% error) with the numerically obtained values.

Fluid sampling tool

DOEpatents

Garcia, Anthony R.; Johnston, Roger G.; Martinez, Ronald K.

1999-05-25

A fluid sampling tool for sampling fluid from a container. The tool has a fluid collecting portion which is drilled into the container wall, thereby affixing it to the wall. The tool may have a fluid extracting section which withdraws fluid collected by the fluid collecting section. The fluid collecting section has a fluted shank with an end configured to drill a hole into a container wall. The shank has a threaded portion for tapping the borehole. The shank is threadably engaged to a cylindrical housing having an inner axial passageway sealed at one end by a septum. A flexible member having a cylindrical portion and a bulbous portion is provided. The housing can be slid into an inner axial passageway in the cylindrical portion and sealed to the flexible member. The bulbous portion has an outer lip defining an opening. The housing is clamped into the chuck of a drill, the lip of the bulbous section is pressed against a container wall until the shank touches the wall, and the user operates the drill. Wall shavings (kerf) are confined in a chamber formed in the bulbous section as it folds when the shank advances inside the container. After sufficient advancement of the shank, an o-ring makes a seal with the container wall.

Fluid sampling tool

DOEpatents

Garcia, A.R.; Johnston, R.G.; Martinez, R.K.

1999-05-25

A fluid sampling tool is described for sampling fluid from a container. The tool has a fluid collecting portion which is drilled into the container wall, thereby affixing it to the wall. The tool may have a fluid extracting section which withdraws fluid collected by the fluid collecting section. The fluid collecting section has a fluted shank with an end configured to drill a hole into a container wall. The shank has a threaded portion for tapping the borehole. The shank is threadably engaged to a cylindrical housing having an inner axial passageway sealed at one end by a septum. A flexible member having a cylindrical portion and a bulbous portion is provided. The housing can be slid into an inner axial passageway in the cylindrical portion and sealed to the flexible member. The bulbous portion has an outer lip defining an opening. The housing is clamped into the chuck of a drill, the lip of the bulbous section is pressed against a container wall until the shank touches the wall, and the user operates the drill. Wall shavings (kerf) are confined in a chamber formed in the bulbous section as it folds when the shank advances inside the container. After sufficient advancement of the shank, an o-ring makes a seal with the container wall. 6 figs.

Acoustic Eaton lens array and its fluid application

NASA Astrophysics Data System (ADS)

Kim, Sang-Hoon; Sy, Pham-Van; Das, Mukunda P.

2017-03-01

A principle of an acoustic Eaton lens array and its application as a removable tsunami wall is proposed theoretically. The lenses are made of expandable rubber pillars or balloons and create a stop-band by rotating the incoming tsunami wave and reduce the pressure by canceling each other. The diameter of each lens is larger than the wavelength of the tsunami near the coast, that is, order of a kilometer. The impedance matching on the border of the lenses results in a little reflection. Before a tsunami, the balloons are buried underground in shallow water near the coast in folded or rounded form. Upon sounding of the tsunami alarm, water and air are pumped into the pillars, which expand and erect the wall above the sea level within a few hours. After the tsunami, the water and air are released from the pillars, which are then buried underground for reuse. Electricity is used to power the entire process. A numerical simulation with a linear tsunami model was carried out.

Fallon, Nevada FORGE Fluid Geochemistry

DOE Data Explorer

Blankenship, Doug; Ayling, Bridget

2018-03-13

Fluid geochemistry analysis for wells supporting the Fallon FORGE project. Samples were collected from geothermal wells using standard geothermal water sampling techniques, including filtration and acidification of the cation sample to pH < 2 prior to geochemical analysis. Analyses after 2005 were done in reputable commercial laboratories that follow standard protocols for aqueous chemistry analysis.

Perilymph composition in scala tympani of the cochlea: influence of cerebrospinal fluid.

PubMed

Hara, A; Salt, A N; Thalmann, R

1989-11-01

A commonly used technique to obtain cochlear perilymph for analysis has been the aspiration of samples through the round window membrane. The present study has investigated the influence of the volume withdrawn on sample composition in the guinea pig. Samples of less than 200 nl in volume taken through the round window showed relatively high glycine content, comparable to the level found in samples taken from scala vestibuli. If larger volumes are withdrawn, lower glycine levels are observed. This is consistent with cerebrospinal fluid (having a low glycine content) being drawn into scala tympani through the cochlear aqueduct and contaminating the sample. The existence of a concentration difference for glycine between scala tympani perilymph and cerebrospinal fluid suggests the physiologic communication across the cochlear aqueduct is relatively small in this species. The observation of considerable exchange between cerebrospinal fluid and perilymph, as reported in some studies, is more likely to be an artifact of the experimental procedures, rather than of physiologic significance. Alternative sampling procedures have been evaluated which allow larger volumes of uncontaminated scala tympani perilymph to be collected.

Method and apparatus for probing relative volume fractions

DOEpatents

Jandrasits, Walter G.; Kikta, Thomas J.

1998-01-01

A relative volume fraction probe particularly for use in a multiphase fluid system includes two parallel conductive paths defining therebetween a sample zone within the system. A generating unit generates time varying electrical signals which are inserted into one of the two parallel conductive paths. A time domain reflectometer receives the time varying electrical signals returned by the second of the two parallel conductive paths and, responsive thereto, outputs a curve of impedance versus distance. An analysis unit then calculates the area under the curve, subtracts the calculated area from an area produced when the sample zone consists entirely of material of a first fluid phase, and divides this calculated difference by the difference between an area produced when the sample zone consists entirely of material of the first fluid phase and an area produced when the sample zone consists entirely of material of a second fluid phase. The result is the volume fraction.

Method and apparatus for probing relative volume fractions

DOEpatents

Jandrasits, W.G.; Kikta, T.J.

1998-03-17

A relative volume fraction probe particularly for use in a multiphase fluid system includes two parallel conductive paths defining therebetween a sample zone within the system. A generating unit generates time varying electrical signals which are inserted into one of the two parallel conductive paths. A time domain reflectometer receives the time varying electrical signals returned by the second of the two parallel conductive paths and, responsive thereto, outputs a curve of impedance versus distance. An analysis unit then calculates the area under the curve, subtracts the calculated area from an area produced when the sample zone consists entirely of material of a first fluid phase, and divides this calculated difference by the difference between an area produced when the sample zone consists entirely of material of the first fluid phase and an area produced when the sample zone consists entirely of material of a second fluid phase. The result is the volume fraction. 9 figs.

Flat-plate solar-array project. Experimental process system development unit for producing semiconductor-grade silicon using the silane-to-silicon process

NASA Technical Reports Server (NTRS)

1981-01-01

The engineering design, fabrication, assembly, operation, economic analysis, and process support R and D for an Experimental Process System Development Unit (EPSDU) are reported. About 95% of purchased equipment is received and will be reshipped to the West Coast location. The Data Collection System is completed. In the area of melting/consolidation, to the system using silicon powder transfer, melting and shotting on a pseudocontinuous basis is demonstrated. It is proposed to continue the very promising fluid bed work.

Comparison of sample preparation techniques and data analysis for the LC-MS/MS-based identification of proteins in human follicular fluid.

PubMed

Lehmann, Roland; Schmidt, André; Pastuschek, Jana; Müller, Mario M; Fritzsche, Andreas; Dieterle, Stefan; Greb, Robert R; Markert, Udo R; Slevogt, Hortense

2018-06-25

The proteomic analysis of complex body fluids by liquid chromatography tandem mass spectrometry (LC-MS/MS) analysis requires the selection of suitable sample preparation techniques and optimal parameter settings in data analysis software packages to obtain reliable results. Proteomic analysis of follicular fluid, as a representative of a complex body fluid similar to serum or plasma, is difficult as it contains a vast amount of high abundant proteins and a variety of proteins with different concentrations. However, the accessibility of this complex body fluid for LC-MS/MS analysis is an opportunity to gain insights into the status, the composition of fertility-relevant proteins including immunological factors or for the discovery of new diagnostic and prognostic markers for, for example, the treatment of infertility. In this study, we compared different sample preparation methods (FASP, eFASP and in-solution digestion) and three different data analysis software packages (Proteome Discoverer with SEQUEST, Mascot and MaxQuant with Andromeda) combined with semi- and full-tryptic databank search options to obtain a maximum coverage of the follicular fluid proteome. We found that the most comprehensive proteome coverage is achieved by the eFASP sample preparation method using SDS in the initial denaturing step and the SEQUEST-based semi-tryptic data analysis. In conclusion, we have developed a fractionation-free methodical workflow for in depth LC-MS/MS-based analysis for the standardized investigation of human follicle fluid as an important representative of a complex body fluid. Taken together, we were able to identify a total of 1392 proteins in follicular fluid. © 2018 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

Use of proteomic analysis to determine the protein constituents of synovial fluid samples from the stifle joints of dogs with and without osteoarthritis secondary to cranial cruciate ligament rupture.

PubMed

Shahid, Muhammad; Manchi, George; Brunnberg, Leo; Raila, Jens

2018-04-01

OBJECTIVE To use proteomic analysis to determine the protein constituents of synovial fluid samples from the stifle joints of dogs with and without osteoarthritis secondary to cranial cruciate ligament rupture (CCLR). ANIMALS 12 dogs with clinically normal stifle joints (controls) and 16 dogs with osteoarthritis secondary to CCLR. PROCEDURES A synovial fluid sample was obtained from all dogs. Synovial fluid total protein concentration was determined by the Bradford assay. Proteins were separated by use of a 1-D SDS-PAGE to detect protein bands that differed between dogs with and without osteoarthritis. Those protein bands then underwent trypsin digestion and were analyzed by matrix-assisted laser desorption-ionization time-of-flight mass spectrometry, the results of which were compared with a curated protein sequence database for protein identification. One of the most frequently identified proteins, apoprotein (apo) A-I, was then quantified in all synovial fluid samples by use of a competitive-inhibition ELISA. Results were compared between dogs with and without osteoarthritis. RESULTS Median synovial fluid total protein and apo A-I concentrations for dogs with osteoarthritis were significantly greater than those for control dogs. The most abundant proteins identified in the synovial fluid were albumin and apo A-I. CONCLUSIONS AND CLINICAL RELEVANCE Results indicated that quantification of synovial fluid total protein and apo A-I concentrations might facilitate diagnosis of osteoarthritis secondary to CCLR in dogs. Further research and validation of synovial fluid apo A-I concentration as a biomarker for osteoarthritis in dogs are necessary before it can be recommended for clinical use.

Liquid and gel electrodes for transverse free flow electrophoresis

DOEpatents

Jung, Byoungsok; Rose, Klint A; Shusteff, Maxim; Persat, Alexandre; Santiago, Juan

2015-04-07

The present invention provides a mechanism for separating or isolating charged particles under the influence of an electric field without metal electrodes being in direct contact with the sample solution. The metal electrodes normally in contact with the sample are replaced with high conductivity fluid electrodes situated parallel and adjacent to the sample. When the fluid electrodes transmit the electric field across the sample, particles within the sample migrate according to their electrophoretic mobility.

Effects of geodynamic setting on the redox state of fluids released by subducted mantle lithosphere

NASA Astrophysics Data System (ADS)

Evans, K. A.; Reddy, S. M.; Tomkins, A. G.; Crossley, R. J.; Frost, B. R.

2017-05-01

Magnetite breakdown during subduction of serpentinised ultramafic rocks may produce oxidised fluids that oxidise the deep Earth and/or the sub-arc mantle, either via direct transport of ferric iron, or via redox reactions between ferric iron and other elements, such as sulfur. However, so far, there is no consensus on the oxidation state of fluids released during subduction of ultramafic rocks, or the factors that control this oxidation state. Subducted samples from a magma-poor rifted margin and a supra-subduction zone geodynamic setting were compared to examine evidence of changes in opaque phase assemblage and ferric iron content as a consequence of subduction, and as a function of geodynamic setting. Thermodynamic calculations in the system Fe-Ni-O-H-S and Fe-Ni-O-S at the pressures and temperatures of interest were used to constrain oxygen activities and fluid compositions. Samples from New Caledonia, which exemplify supra-subduction zone mantle, contain awaruite (FeNi3) and equilibrated with hydrogen-bearing fluids at oxygen activity less than the FMQ (fayalite-magnetite-quartz) buffer. In contrast, samples from the Zermatt Saas Zone ophiolite, Western Alps, which are thought to represent mantle from a subducted magma-poor rifted margin, contain magnetite plus sulfur-rich phases such as pyrite (FeS2), and are inferred to have equilibrated with hydrogen-poor fluids at oxygen activity greater than FMQ. This major difference is independent of differences in subduction pressure-temperature conditions, variation in peridotite protolith composition, or the nature of adjacent units. We propose that the Zermatt Saas Zone samples would have undergone more complete serpentinisation prior to subduction than the supra-subduction zone (SSZ) New Caledonian samples. This difference explains the different fluid compositions, because incompletely serpentinised rocks containing olivine and brucite retain or evolve awaruite-bearing assemblages that buffer fluid compositions to high hydrogen activity (aH2). Ultramafic rocks are associated with two distinctly different fluid compositions during pre-subduction and subduction serpentinisation. Initially, while olivine is in equilibrium with infiltrating fluid, mineral assemblages that include awaruite in the rocks buffer fluids to H2-bearing, low aO2 compositions. Deserpentinisation of incompletely serpentinised rocks in which awaruite is present also produces H2-bearing fluids. Once awaruite is exhausted, H2-poor, high aO2 fluids co-exist with awaruite-absent assemblages, and deserpentinisation of such rocks would produce H2O-rich fluids. Thus, deserpentinisation of ultramafic rocks could produce either hydrogen-bearing fluids that could infiltrate and reduce the sub-arc mantle, or more oxidised fluids, which could transfer redox budget to other geochemical reservoirs such as the sub-arc mantle. Therefore, the redox contribution of subducted ultramafic rocks to the deep Earth and sub-arc mantle depends on the extent of protolith serpentinisation. Pre-subduction settings that promote extensive serpentinisation by oxidised fluids at high fluid:rock ratios in open systems, such as slow and ultraslow spreading ridges, transform faults, oceanic core complexes, and exhumed mantle at rifted continental margins, may produce more oxidised fluids than those associated with less pervasive serpentinisation and fluids that may be rock-buffered to a reduced state.

Investigations of attitudes towards offshore wind farm development in ireland: their implications towards future development of the industry

NASA Astrophysics Data System (ADS)

Melia, Aidan

This current research investigates what the attitudes of Irish people are towards the development of offshore wind farms in Ireland. Using a qualitative approach, a questionnaire is carefully designed and distributed among a sample population from three coastal communities. One is located on the west coast and two on the east coast. The two locations on the east coast have an involvement in offshore wind farms. One of the locations plays host to Ireland's only offshore wind farm, while there are plans in place for an offshore wind farm at the other location. The results from the questionnaires are analyzed with regard to the respondent's proximity to the coast, their age, their gender and their educational levels. This analysis results in a number of conclusions being generated. Overall, it is found that there is a strong support among the respondents for the development of offshore wind farms in Ireland.

Gastric fluid versus amniotic fluid analysis for the identification of intra-amniotic infection due to Ureaplasma species

PubMed Central

Kim, Sun Min; Romero, Roberto; Lee, JoonHo; Chaemsaithong, Piya; Docheva, Nikolina; Yoon, Bo Hyun

2017-01-01

Objective Early neonatal sepsis is often due to intra-amniotic infection. The stomach of the neonate contains fluid swallowed before and during delivery. The presence of bacteria as well as neutrophils detected by culture or Gram stain in the gastric fluid during the first day of life is suggestive of exposure to bacteria or inflammation. We undertook this study to determine the relationship between gastric fluid analysis and amniotic fluid obtained by transabdominal amniocentesis in the detection of Ureaplasma species, the most frequent microorganisms responsible for intra-amniotic infection. Materials and Methods The study population consisted of 100 singleton pregnant women who delivered preterm neonates (<35weeks) within 7 days of amniocentesis. Gastric fluid of newborns was obtained by nasogastric intubation on the day of birth. Amniotic fluid and gastric fluid were cultured for genital Mycoplasmas and polymerase chain reaction (PCR) for Ureaplasma species was performed. Intra-amniotic inflammation was defined as an elevated amniotic fluid matrix metalloproteinase-8 concentration (> 23ng/mL). Results 1) Ureaplasma species were detected by culture or PCR in 18% (18/100) of amniotic fluid samples and in 5% (5/100) of gastric fluid samples; 2) among the amniotic fluid cases positive for Ureaplasma species, these microorganisms were identified in 27.8% (5/18) of gastric fluid samples; 3) none of the cases negative for Ureaplasma species in the amniotic fluid were found to be positive for these microorganisms in the gastric fluid; 4) patients with amniotic fluid positive for Ureaplasma species but with gastric fluid negative for these microorganisms had a significantly higher rate of intra-amniotic inflammation, acute histologic chorioamnionitis, and neonatal death than those with both amniotic fluid and gastric fluid negative for Ureaplasma species; and 5) no significant differences were observed in the rate of intra-amniotic inflammation, acute histologic chorioamnionitis, and neonatal death between patients with amniotic fluid positive for Ureaplasma species but with gastric fluid negative for these microorganisms and those with both amniotic fluid and gastric fluid positive for Ureaplasma species. Conclusions Gastric fluid analysis has 100% specificity in the identification of intra-amniotic infection with Ureaplasma species. However the detection of Ureaplasma species by culture or PCR in the gastric fluid of neonates at birth did not identify these microorganisms in two-thirds of cases with microbial invasion of the amniotic cavity. Thus, amniotic fluid analysis is superior to that of gastric fluid in the identification of intra-amniotic infection. PMID:26631980

Gastric fluid versus amniotic fluid analysis for the identification of intra-amniotic infection due to Ureaplasma species.

PubMed

Kim, Sun Min; Romero, Roberto; Lee, JoonHo; Chaemsaithong, Piya; Docheva, Nikolina; Yoon, Bo Hyun

2016-01-01

Early neonatal sepsis is often due to intra-amniotic infection. The stomach of the neonate contains fluid swallowed before and during delivery. The presence of bacteria as well as neutrophils detected by culture or Gram stain of the gastric fluid during the first day of life is suggestive of exposure to bacteria or inflammation. We undertook this study to determine the relationship between gastric fluid analysis and amniotic fluid obtained by transabdominal amniocentesis in the detection of Ureaplasma species, the most frequent microorganisms responsible for intra-amniotic infection. The study population consisted of 100 singleton pregnant women who delivered preterm neonates (<35 weeks) within 7 days of amniocentesis. Gastric fluid of newborns was obtained by nasogastric intubation on the day of birth. Amniotic fluid and gastric fluid were cultured for genital Mycoplasmas, and polymerase chain reaction (PCR) for Ureaplasma species was performed. Intra-amniotic inflammation was defined as an elevated amniotic fluid matrix metalloproteinase-8 concentration (>23 ng/mL). (1) Ureaplasma species were detected by culture or PCR in 18% (18/100) of amniotic fluid samples and in 5% (5/100) of gastric fluid samples; (2) among the amniotic fluid cases positive for Ureaplasma species, these microorganisms were identified in 27.8% (5/18) of gastric fluid samples; (3) none of the cases negative for Ureaplasma species in the amniotic fluid were found to be positive for these microorganisms in the gastric fluid; (4) patients with amniotic fluid positive for Ureaplasma species but with gastric fluid negative for these microorganisms had a significantly higher rate of intra-amniotic inflammation, acute histologic chorioamnionitis, and neonatal death than those with both amniotic fluid and gastric fluid negative for Ureaplasma species; and (5) no significant differences were observed in the rate of intra-amniotic inflammation, acute histologic chorioamnionitis, and neonatal death between patients with amniotic fluid positive for Ureaplasma species but with gastric fluid negative for these microorganisms and those with both amniotic fluid and gastric fluid positive for Ureaplasma species. Gastric fluid analysis has 100% specificity in the identification of intra-amniotic infection with Ureaplasma species. However, the detection of Ureaplasma species by culture or PCR in the gastric fluid of neonates at birth did not identify these microorganisms in two-thirds of cases with microbial invasion of the amniotic cavity. Thus, amniotic fluid analysis is superior to that of gastric fluid in the identification of intra-amniotic infection.

Laboratory Investigation of the Effect of Water-Saturation on Seismic Wave Dispersion in Carbonates

NASA Astrophysics Data System (ADS)

Li, W.; Pyrak-Nolte, L. J.

2009-12-01

In subsurface rock, fluid content changes with time through natural causes or because of human interactions, such as extraction or sequestration of fluids. The ability to monitor, seismically, fluid migration in the subsurface requires an understanding of the effects that the degree of saturation and spatial distribution of fluids have on wave propagation in rock. In this study, we find that the seismic dispersion of a dry carbonate rock can be masked by saturating the sample. We used a laboratory mini-seismic array to monitor fluid invasion and withdrawal in a carbonate rock with fabric-controlled layering. Experiments were performed on prismatic samples of Austin Chalk measuring 50mm x 50mm x 100mm. The epoxy-sealed samples contained an inlet and an outlet port to enable fluid invasion/withdrawal along the long axis of the sample. Water was infused and withdrawn from the sample at a rate of 1ml/hr. The mini-seismic array consisted of a set of 12 piezoelectric contact transducers, each with a central frequency 1.0 MHz. Three compressional wave source-receiver pairs and three shear wave source-receiver pairs were used to probe along the length of the sample prior to invasion and during invasion and withdrawal of water from the sample. A pressure transducer was used to record the fluid pressure simultaneously with the full transmitted wave forms every 15-30 minutes. A wavelet analysis determined the effect of fluid invasion on velocity dispersion. We observed that the compressional wave dispersion was more sensitive to changes in saturation than the shear wave dispersion. When the sample was unsaturated, the high frequency components of the compressional wave (1.2MHz to 2MHz) had lower velocities (~ 2750m/s) than the low frequency components, which decrease monotonically from 2890 m/s for 0.2MHz to 1.2 MHz. As water infused the sample, the dispersion weakened. When the sample as fully saturated, the compressional wave velocity was frequency independent. The functional form of the dependence of the shear wave velocity on frequency is relatively constant with fluid saturation, but the magnitude of the velocity decreased (~35 m/s) with increasing saturation. From theoretical calculations, the shear modulus increased during water invasion and was independent of frequency. However, the changes in the Young’s modulus with water invasion depended on the frequency of observation. When 46.5ml was infused into the sample, the Young’s modulus interpreted from the high-frequency components (wavelength from 1.43mm to 2.4mm) increased 70%, while the modulus from the low-frequency components (wavelengths vary from 1.4cm to 3.4mm) increased between 20% and 55%. Interpreting seismic data to determine fluid saturation in rock with fabric-controlled layering requires an understanding of the seismic dispersion properties of the rock in addition to the ability of fluids on alter or mask the dispersion. Acknowledgments: The authors wish to acknowledge support of this work by the Geosciences Research Program, Office of Basic Energy Sciences US Department of Energy (DEFG02-97ER14785 08), by Exxon Mobil Upstream Research Company and the GeoMathematical Imaging Group at Purdue University.

A MORE COST-EFFECTIVE EMAP-W BENTHIC MACROFAUNAL SAMPLE UNIT

EPA Science Inventory

The standard EPA West Coast Environmental Monitoring and Assessment Program (EMAP-W) benthic macrofaunal sampling protocol is to collect 30-50 random benthic samples per reporting unit (e.g., estuary, region) using a 0.1 m2 grab and to sort out macrofauna using a 1.0 mm mesh scre...

Occurrence of alkylphenols and bisphenol A in wild mussel samples from the Spanish Atlantic coast and Bay of Biscay.

PubMed

Salgueiro-González, N; Turnes-Carou, I; Viñas, L; Besada, V; Muniategui-Lorenzo, S; López-Mahía, P; Prada-Rodríguez, D

2016-05-15

Wild mussels (Mytilus galloprovincialis) were selected as bioindicators of chemical pollution to evaluate the occurrence and spatial distribution of five endocrine disrupting compounds in the Spanish Atlantic coast and Bay of Biscay. A total of 24 samples were collected in May, 2011 and analysed by selective pressurized liquid extraction followed by liquid chromatography tandem mass spectrometry determination. Branched alkylphenols (4-tert-octylphenol and nonylphenol) were determined in more than 90% of the analysed samples whereas the presence of linear alkylphenols (4-n-octylphenol and 4-n-nonylphenol) was scarcely detected (<12% of the samples). Wastewater treatment plants discharges and nautical, fishing and shipping activities were considered the primary sources of contamination by alkylphenols. Bisphenol A was found in 16% of the analysed samples associated to punctual industrial discharges. A total endocrine disrupting compound (alkylphenols and bisphenol A) average concentration of 604ngg(-1) dw was calculated and nonylphenol was the main contributor in almost all sampling points. Copyright © 2016 Elsevier Ltd. All rights reserved.

Stimuli Responsive/Rheoreversible Hydraulic Fracturing Fluids for Enhanced Geothermal Energy Production (Part II)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bonneville, Alain; Jung, Hun Bok; Shao, Hongbo

We have used an environmentally friendly and recyclable hydraulic fracturing fluid - diluted aqueous solutions of polyallylamine or PAA – for reservoir stimulation in Enhanced Geothermal System (EGS). This fluid undergoes a controlled and large volume expansion with a simultaneous increase in viscosity triggered by CO2 at EGS temperatures. We are presenting here the results of laboratory-scale hydraulic fracturing experiment using the fluid on small cylindrical rock cores (1.59 cm in diameter and 5.08 cm in length) from the Coso geothermal field in California. Rock samples consisted of Mesozoic diorite metamorphosed to greenschist facies. The experiments were conducted on 5more » samples for realistic ranges of pressures (up to 275 bar) and temperatures (up to 210 °C) for both the rock samples and the injected fluid. After fracturing, cores were subjected to a CO2 leakage test, injection of KI solution, and X-ray microtomography (XMT) scanning to examine the formation and distribution of fractures. The design and conduct of these experiments will be presented and discussed in details. Based on the obtained XMT images, Computational Fluid Dynamics (CFD) simulations were then performed to visualize hydraulic fractures and compute the bulk permeability. OpenFOAM (OpenCFD Ltd., Reading, UK), was used to solve the steady state simulation. The flow predictions, based upon the laminar, 3-D, incompressible Navier-Stokes equations for fluid mass and momentum, show the remarkable stimulation of the permeability in the core samples and demonstrate the efficiency of such a CO2 triggered fluid in EGS.« less

Selected results from LLNL-Hughes RAR for West Coast Scotland Experiment 1991

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lehman, S K; Johnston, B; Twogood, R

1993-01-05

The joint US -- UK 1991 West Coast Scotland Experiment (WCSEX) was held in two locations. From July 5 to 12, 1991, in Upper Loch Linnhe, and from July 18 to July 26, 1991, in the Sound of Sleat. The LLNL-Hughes team fielded a fully polarimetric X-band hill-side real aperture radar to collect internal wave wake data. We present here a sample data set of the best radar runs.

Investigation of extractable organic compounds in deep-sea hydrothermal vent fluids along the Mid-Atlantic Ridge

NASA Astrophysics Data System (ADS)

McCollom, Thomas M.; Seewald, Jeffrey S.; German, Christopher R.

2015-05-01

The possibility that deep-sea hydrothermal vents may contain organic compounds produced by abiotic synthesis or by microbial communities living deep beneath the surface has led to numerous studies of the organic composition of vent fluids. Most of these studies have focused on methane and other light hydrocarbons, while the possible occurrence of more complex organic compounds in the fluids has remained largely unstudied. To address this issue, the presence of higher molecular weight organic compounds in deep-sea hydrothermal fluids was assessed at three sites along the Mid-Atlantic Ridge that span a range of temperatures (51 to >360 °C), fluid compositions, and host-rock lithologies (mafic to ultramafic). Samples were obtained at several sites within the Lucky Strike, Rainbow, and Lost City hydrothermal fields. Three methods were employed to extract organic compounds for analysis, including liquid:liquid extraction, cold trapping on the walls of a coil of titanium tubing, and pumping fluids through cartridges filled with solid phase extraction (SPE) sorbents. The only samples to consistently yield high amounts of extractable organic compounds were the warm (51-91 °C), highly alkaline fluids from Lost City, which contained elevated concentrations of C8, C10, and C12n-alkanoic acids and, in some cases, trithiolane, hexadecanol, squalene, and cholesterol. Collectively, the C8-C12 acids can account for about 15% of the total dissolved organic carbon in the Lost City fluids. The even-carbon-number predominance of the alkanoic acids indicates a biological origin, but it is unclear whether these compounds are derived from microbial activity occurring within the hydrothermal chimney proximal to the site of fluid discharge or are transported from deeper within the system. Hydrothermal fluids from the Lucky Strike and Rainbow fields were characterized by an overall scarcity of extractable dissolved organic compounds. Trace amounts of aromatic hydrocarbons including phenanthrenes and benzothiophene were the only compounds that could be identified as indigenous components of these fluids. Although hydrocarbons and fatty acids were observed in some samples, those compounds were likely derived from particulate matter or biomass entrained during fluid collection. In addition, extracts of some fluid samples from the Rainbow field were found to contain an unresolved complex mixture (UCM) of organic compounds. This UCM shared some characteristics with organic matter extracted from bottom seawater, suggesting that the organic matter observed in these samples might represent seawater-derived compounds that had persisted, albeit with partial alteration, during circulation through the hydrothermal system. While there is considerable evidence that Rainbow and Lost City vent fluids contain methane and other light hydrocarbons produced through abiotic reduction of inorganic carbon, we found no evidence for more complex organic compounds with an abiotic origin in the same fluids.

Bronchoscopic culture

MedlinePlus

... a laboratory exam to check a piece of tissue or fluid from the lungs for infection-causing germs. ... Culture - bronchoscopic ... used to get a sample ( biopsy ) of lung tissue or fluid. The sample ... a special dish (culture). It is then watched to see if bacteria ...

Comparison of Polyfluoroalkyl Compound Concentrations in Maternal Serum and Amniotic Fluid: A Pilot Study

PubMed Central

Stein, Cheryl R.; Wolff, Mary S.; Calafat, Antonia M.; Kato, Kayoko; Engel, Stephanie M.

2012-01-01

The extent to which polyfluoroalkyl compounds (PFCs) are detectable in amniotic fluid is unknown. Using paired samples from 28 women, we compared the concentration of 8 PFCs measured in serum, the standard matrix for assessing human exposure, amniotic fluid from routine amniocentesis, and urine. Perfluorooctanoate (PFOA), perfluorononanoate (PFNA), perfluorooctane sulfonate (PFOS), and perfluorohexane sulfonate (PFHxS) were detected in all maternal serum samples. The number of amniotic fluid samples with detectable concentrations differed by PFC (PFOA n=24; PFNA n=10; PFOS n=9; PFHxS n=4). The correlation coefficient between maternal serum and amniotic PFC levels varied considerably by PFC (PFOA ρ=0.64, p<0.001; PFNA ρ=0.05, p=0.9; PFOS ρ=0.76, p=0.01; PFHxS ρ=0.80, p=0.2). Using linear regression, PFOA appeared to be commonly detected in amniotic fluid if the serum concentration exceeded approximately 1.5 ng/mL whereas PFOS was rarely detected in amniotic fluid until the serum concentration was about 5.5 ng/mL. No PFCs were detected in urine. PMID:22613200

Shallow subtidal survey of the Washington outer coast and Olympic National park to determine the distribution, fate, and effects of spilled bunker C fuel oil. Final report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Carney, D.; Kvitek, R.G.

1990-12-01

The report provides an evaluation of the impacts of the bunker C fuel oil spill on the shallow subtidal benthic communities of the Washington coast. The study is designed to provide a subtidal extension of the intertidal investigation performed by Battelle Laboratories. As such, the study sites and many of the methodologies are the same. There are four objectives of the study. They are: (1) to identify and define from existing data, the probable distribution of subtidal deposits along the Washington coast, (2) to document petroleum hydrocarbon contamination in shallow subtidal sediments in the Olympic National Park and along themore » Washington outer coast, (3) to characterize petroleum hydrocarbon contamination in molluscan and other species' tissues of opportunity in subtidal habitats along the Washington outer coast, and (4) to collect the initial faunal and sediment samples required for possible future analyses should oil-spill related hydrocarbons be detected from initial sediment and tissue analyses.« less

Forensic interlaboratory evaluation of the ForFLUID kit for vaginal fluids identification.

PubMed

Giampaoli, Saverio; Alessandrini, Federica; Berti, Andrea; Ripani, Luigi; Choi, Ajin; Crab, Roselien; De Vittori, Elisabetta; Egyed, Balazs; Haas, Cordula; Lee, Hwan Young; Korabecná, Marie; Noel, Fabrice; Podini, Daniele; Tagliabracci, Adriano; Valentini, Alessio; Romano Spica, Vincenzo

2014-01-01

Identification of vaginal fluids is an important step in the process of sexual assaults confirmation. Advances in both microbiology and molecular biology defined technical approaches allowing the discrimination of body fluids. These protocols are based on the identification of specific bacterial communities by microfloraDNA (mfDNA) amplification. A multiplex real time-PCR assay (ForFLUID kit) has been developed for identifying biological fluids and for discrimination among vaginal, oral and fecal samples. In order to test its efficacy and reliability of the assay in the identification of vaginal fluids, an interlaboratory evaluation has been performed on homogeneous vaginal swabs. All the involved laboratories were able to correctly recognize all the vaginal swabs, and no false positives were identified when the assay was applied on non-vaginal samples. The assay represents an useful molecular tool that can be easily adopted by forensic geneticists involved in vaginal fluid identification. Copyright © 2013 Elsevier Ltd and Faculty of Forensic and Legal Medicine. All rights reserved.

Photonic-crystal fiber as a multifunctional optical sensor and sample collector.

PubMed

Konorov, Stanislav; Zheltikov, Aleksei; Scalora, Michael

2005-05-02

Two protocols of optical sensing realized with the same photonic-crystal fiber are compared. In the first protocol, diode-laser radiation is delivered to a sample through the central core of a dual-cladding photonic-crystal fiber with a diameter of a few micrometers, while the large-diameter fiber cladding serves to collect the fluorescent response from the sample and to guide it to a detector in the backward direction. In the second scheme, liquid sample is collected by a microcapillary array in the fiber cladding and is interrogated by laser radiation guided in the fiber modes. For sample fluids with refractive indices exceeding the refractive index of the fiber material, fluid channels in photonic-crystal fibers can guide laser light by total internal reflection, providing an 80% overlap of interrogating radiation with sample fluid.

Performance of polymerase chain reaction for the diagnosis of cystic echinococcosis using serum, urine, and cyst fluid samples

PubMed Central

Chaya, DR; Parija, Subhash Chandra

2014-01-01

Introduction: Cystic echinococcosis (CE) is a chronic zoonosis which presents with variable clinical manifestations. Currently the diagnosis of this disease is based on radiological findings and serological tests which lack specificity. Although antigen detection from the cyst fluid is the most specific, it is seldom done due to the complications involved. Detecting the presence of Echinococcus granulosus specific deoxyribonucleic acid (DNA) by the polymerase chain reaction (PCR) could provide a definitive diagnosis of CE. Materials and Methods: An in-house PCR assay was devised to detect E. granulosus specific DNA in serum, urine and hydatid cyst fluid. The ability of the PCR to detect E. granulosus in the above mentioned samples were observed in comparison with other antigen and antibody detection tests. Results: Serum samples from surgically confirmed patients of CE with ruptured cysts contained the corresponding DNA while the in the majority of cases who had an intact cyst had no DNA of E. granulosus in their serum. DNA of E. granulosus was not found to be excreted in urine. PCR performed equal to antigen detection ELISA while testing hydatid cyst fluid samples. Conclusions: Serum and urine might not serve as useful samples for the molecular diagnosis of cystic echinococcosis. However, PCR can be useful on serum samples to detect ruptured hydatid cysts and on hydatid cyst fluid to confirm the parasitic diagnosis. PMID:24754027

Performance of polymerase chain reaction for the diagnosis of cystic echinococcosis using serum, urine, and cyst fluid samples.

PubMed

Chaya, Dr; Parija, Subhash Chandra

2014-01-01

Cystic echinococcosis (CE) is a chronic zoonosis which presents with variable clinical manifestations. Currently the diagnosis of this disease is based on radiological findings and serological tests which lack specificity. Although antigen detection from the cyst fluid is the most specific, it is seldom done due to the complications involved. Detecting the presence of Echinococcus granulosus specific deoxyribonucleic acid (DNA) by the polymerase chain reaction (PCR) could provide a definitive diagnosis of CE. An in-house PCR assay was devised to detect E. granulosus specific DNA in serum, urine and hydatid cyst fluid. The ability of the PCR to detect E. granulosus in the above mentioned samples were observed in comparison with other antigen and antibody detection tests. Serum samples from surgically confirmed patients of CE with ruptured cysts contained the corresponding DNA while the in the majority of cases who had an intact cyst had no DNA of E. granulosus in their serum. DNA of E. granulosus was not found to be excreted in urine. PCR performed equal to antigen detection ELISA while testing hydatid cyst fluid samples. Serum and urine might not serve as useful samples for the molecular diagnosis of cystic echinococcosis. However, PCR can be useful on serum samples to detect ruptured hydatid cysts and on hydatid cyst fluid to confirm the parasitic diagnosis.

Thermal Efficiency of Lava Tubes of the Pu'u O'o-Kupaianaha Eruption, Kilauea Volcano, Hawaii

NASA Astrophysics Data System (ADS)

Helz, R. T.; Heliker, C.; Hon, K.; Mangan, M. T.

2002-12-01

We have applied glass geothermometry to a suite of very glassy lava samples collected from the upper (pond) and lower (coast) ends of the Episode 48 tube system, throughout the lifetime of the Kupaianaha pond, and also to a small suite of skylight samples collected from various tubes active between 1987 and 1993. The results for the pond-coast pairs are: (1) From November 1986 through January 1988 (15 months), the average change in glass quenching temperature from pond to coast (for 12 pairs) is 12.4°C. The average increase in crystallinity (inferred from observed enrichment of TiO2 and K2O in the coastal glasses) is 11-12% by weight. (2) For the 23 months from February 1988 through November 1989, the average change in inferred quenching temperature (for 25 pairs) is 8.4°C. The average increase in crystallinity is 4-5% by weight. Within this part of the data set, pond and coastal temperatures rise and fall together much of the time, even though these temporal fluctuations are at or below the limit of resolution of glass geothermometry (ΔT < 3 degrees). (3) The minimum difference in temperature for any pond-coast pair is 7°C. Twenty-four (out of 37) pairs have ΔT = 7-9°C, over the three year period. About half of the skylight samples have glass MgO contents consistent with their linear position along the tube system. In other samples, the skylight glasses are displaced to lower MgO contents, suggesting that such samples are not consistently as well-quenched as the pond and littoral spatter samples. For the data from 1992-93, the new tube system was 2 km shorter than the earlier, Kupaianaha-fed tubes. The best-documented ΔT of 6°C for some 1993 samples observed for this 10-km long tube, gives exactly the same temperature decrease with distance (0.6°/km) as the limiting ΔT of 7°C observed for the 12-km Kupaianaha tube systems. This cooling rate may represent the limiting thermal efficiency of tubes of the current Kilauea East Rift eruption.

Nanopipettes: probes for local sample analysis† †Electronic supplementary information (ESI) available. See DOI: 10.1039/c5sc00668f Click here for additional data file.

PubMed Central

Saha-Shah, Anumita; Weber, Anna E.; Karty, Jonathan A.; Ray, Steven J.; Hieftje, Gary M.

2015-01-01

Nanopipettes (pipettes with diameters <1 μm) were explored as pressure-driven fluid manipulation tools for sampling nanoliter volumes of fluids. The fundamental behavior of fluids confined in the narrow channels of the nanopipette shank was studied to optimize sampling volume and probe geometry. This method was utilized to collect nanoliter volumes (<10 nL) of sample from single Allium cepa cells and live Drosophila melanogaster first instar larvae. Matrix assisted laser desorption/ionization-mass spectrometry (MALDI-MS) was utilized to characterize the collected sample. The use of nanopipettes for surface sampling of mouse brain tissue sections was also explored. Lipid analyses were performed on mouse brain tissues with spatial resolution of sampling as small as 50 μm. Nanopipettes were shown to be a versatile tool that will find further application in studies of sample heterogeneity and population analysis for a wide range of samples. PMID:28706697

Simultaneous analysis of psychotropic phenylalkylamines in oral fluid by GC-MS with automated SPE and its application to legal cases.

PubMed

Choi, Hyeyoung; Baeck, Seungkyung; Jang, Moonhee; Lee, Sooyeun; Choi, Hwakyung; Chung, Heesun

2012-02-10

Phenylalkylamine derivatives, such as methamphetamine (MA), amphetamine (AM), 3,4-methylenedioxymethamphetamine (MDMA), 3,4-methylenedioxyamphetamine (MDA), phentermine (PT), fenfluramine (FFA) and phenmetrazine (PM), and ketamine (KT) are widely abused recreational or anorectic drugs in Korea and are regulated under the Controlled Substance Act in Korea. Phenylalkylamines and ketamine analysis is normally performed using both urine and hair samples but there is no established method for the simultaneous analysis of all these phenylalkylamines and ketamine in oral fluids. Oral fluid is easy to collect/handle and can provide an indication of recent drug abuse. In this study, to confirm the presence of phenylalkylamine derivatives and ketamine in oral fluid after screening with an immunoassay, an analytical method using automated solid phase extraction (SPE) and gas chromatography-mass spectrometry (GC-MS) was developed and fully validated according to international guidelines. The applicability of the assay was demonstrated by analyzing of authentic oral fluid samples and the results of oral fluid analysis were compared with those in urine and hair to to evaluate the feasibility of oral fluid in forensic cases. The recovery of phenylalkylamines and ketamine from oral fluid collection devices was also assessed. Oral fluid specimens from 23 drug abuse suspects submitted by the police were collected using Salivette (Sarstedt, Nümbrecht, Germany), Quantisal (Immunalysis, Pomona, CA) or direct expectoration. The samples were screened using a biochip array analyzer (Evidence Investigator, Randox, Antrim, UK). For confirmation, the samples were analyzed by GC-MS in selected-ion monitoring (SIM) mode after extraction using automated SPE (RapidTrace, Zymark, MA, USA) with a mixed-mode cation exchange cartridge (CLEAN SCREEN, 130 mg/3 ml, UCT, PA, USA) and derivatization with trifluoroacetic anhydride (TFA). The results from the immunoassay were consistent with those from GC-MS. Twenty oral fluid samples gave positive results for MA, AM, PT and/or PM among the 23 cases, which gave positive results in urine and/or hair. Although large variations in the MA, AM, PT and PM concentrations were observed in three different specimens, the oral fluid specimen was useful for demonstrating phenylalkylamines and ketamine abuse as an alternative specimen for urine. Copyright © 2011 Elsevier Ireland Ltd. All rights reserved.

Microfluidic device and method for focusing, segmenting, and dispensing of a fluid stream

DOEpatents

Jacobson, Stephen C [Knoxville, TN; Ramsey, J Michael [Knoxville, TN

2008-09-09

A microfluidic device and method for forming and dispensing minute volume segments of a material are described. In accordance with the present invention, a microfluidic device and method are provided for spatially confining the material in a focusing element. The device is also adapted for segmenting the confined material into minute volume segments, and dispensing a volume segment to a waste or collection channel. The device further includes means for driving the respective streams of sample and focusing fluids through respective channels into a chamber, such that the focusing fluid streams spatially confine the sample material. The device may also include additional means for driving a minute volume segment of the spatially confined sample material into a collection channel in fluid communication with the waste reservoir.

Microfluidic device and method for focusing, segmenting, and dispensing of a fluid stream

DOEpatents

Jacobson, Stephen C.; Ramsey, J. Michael

2004-09-14

A microfluidic device for forming and/or dispensing minute volume segments of a material is described. In accordance with one aspect of the present invention, a microfluidic device and method is provided for spatially confining the material in a focusing element. The device is also capable of segmenting the confined material into minute volume segments, and dispensing a volume segment to a waste or collection channel. The device further includes means for driving the respective streams of sample and focusing fluids through respective channels into a chamber, such that the focusing fluid streams spatially confine the sample material. The device may also include additional means for driving a minute volume segment of the spatially confined sample material into a collection channel in fluid communication with the waste reservoir.

Detecting low levels of radionuclides in fluids

DOEpatents

Patch, Keith D.; Morgan, Dean T.

2000-01-01

An apparatus and method for detecting low levels of one or more radionuclides in a fluid sample uses a substrate that includes an ion exchange resin or other sorbent material to collect the radionuclides. A collecting apparatus includes a collecting chamber that exposes the substrate to a measured amount of the fluid sample such that radionuclides in the fluid sample are collected by the ion exchange resin. A drying apparatus, which can include a drying chamber, then dries the substrate. A measuring apparatus measures emissions from radionuclides collected on the substrate. The substrate is positioned in a measuring chamber proximate to a detector, which provides a signal in response to emissions from the radionuclides. Other analysis methods can be used to detect non-radioactive analytes, which can be collected with other types of sorbent materials.

Rope-based oral fluid sampling for early detection of classical swine fever in domestic pigs at group level.

PubMed

Dietze, Klaas; Tucakov, Anna; Engel, Tatjana; Wirtz, Sabine; Depner, Klaus; Globig, Anja; Kammerer, Robert; Mouchantat, Susan

2017-01-05

Non-invasive sampling techniques based on the analysis of oral fluid specimen have gained substantial importance in the field of swine herd management. Methodological advances have a focus on endemic viral diseases in commercial pig production. More recently, these approaches have been adapted to non-invasive sampling of wild boar for transboundary animal disease detection for which these effective population level sampling methods have not been available. In this study, a rope-in-a-bait based oral fluid sampling technique was tested to detect classical swine fever virus nucleic acid shedding from experimentally infected domestic pigs. Separated in two groups treated identically, the course of the infection was slightly differing in terms of onset of the clinical signs and levels of viral ribonucleic acid detection in the blood and oral fluid. The technique was capable of detecting classical swine fever virus nucleic acid as of day 7 post infection coinciding with the first detection in conventional oropharyngeal swab samples from some individual animals. Except for day 7 post infection in the "slower onset group", the chances of classical swine fever virus nucleic acid detection in ropes were identical or higher as compared to the individual sampling. With the provided evidence, non-invasive oral fluid sampling at group level can be considered as additional cost-effective detection tool in classical swine fever prevention and control strategies. The proposed methodology is of particular use in production systems with reduced access to veterinary services such as backyard or scavenging pig production where it can be integrated in feeding or baiting practices.

Pericardial fluid Gram stain

MedlinePlus

... stain To use the sharing features on this page, please enable JavaScript. Pericardial fluid Gram stain is a method of staining a sample of fluid taken from the pericardium. This is the sac surrounding ...

Bacterial adenosine triphosphate as a measure of urinary tract infection

NASA Technical Reports Server (NTRS)

Chappelle, E. W.; Picciolo, G. L.

1971-01-01

Procedure detects and counts bacteria present in urine samples. Method also determines bacterial levels in other aqueous body fluids including lymph fluid, plasma, blood, spinal fluid, saliva and mucous.

Quantitative determination of methamphetamine in oral fluid by liquid-liquid extraction and gas chromatography/mass spectrometry.

PubMed

Bahmanabadi, L; Akhgari, M; Jokar, F; Sadeghi, H B

2017-02-01

Methamphetamine abuse is one of the most medical and social problems many countries face. In spite of the ban on the use of methamphetamine, it is widely available in Iran's drug black market. There are many analytical methods for the detection of methamphetamine in biological specimen. Oral fluid has become a popular specimen to test for the presence of methamphetamine. The purpose of the present study was to develop a method for the extraction and detection of methamphetamine in oral fluid samples using liquid-liquid extraction (LLE) and gas chromatography/mass spectrometry (GC/MS) methods. An analytical study was designed in that blank and 50 authentic oral fluid samples were collected to be first extracted by LLE and subsequently analysed by GC/MS. The method was fully validated and showed an excellent intra- and inter-assay precision (reflex sympathetic dystrophy ˂ 10%) for external quality control samples. Recovery with LLE methods was 96%. Limit of detection and limit of quantitation were 5 and 15 ng/mL, respectively. The method showed high selectivity, no additional peak due to interfering substances in samples was observed. The introduced method was sensitive, accurate and precise enough for the extraction of methamphetamine from oral fluid samples in forensic toxicology laboratories.

Application of Oral Fluid Assays in Support of Mumps, Rubella and Varicella Control Programs.

PubMed

Maple, Peter A C

2015-12-09

Detection of specific viral antibody or nucleic acid produced by infection or immunization, using oral fluid samples, offers increased potential for wider population uptake compared to blood sampling. This methodology is well established for the control of HIV and measles infections, but can also be applied to the control of other vaccine preventable infections, and this review describes the application of oral fluid assays in support of mumps, rubella and varicella national immunization programs. In England and Wales individuals with suspected mumps or rubella, based on clinical presentation, can have an oral fluid swab sample taken for case confirmation. Universal varicella immunization of children has led to a drastic reduction of chickenpox in those countries where it is used; however, in England and Wales such a policy has not been instigated. Consequently, in England and Wales most children have had chickenpox by age 10 years; however, small, but significant, numbers of adults remain susceptible. Targeted varicella zoster virus (VZV) immunization of susceptible adolescents offers the potential to reduce the pool of susceptible adults and oral fluid determination of VZV immunity in adolescents is a potential means of identifying susceptible individuals in need of VZV vaccination. The main application of oral fluid testing is in those circumstances where blood sampling is deemed not necessary, or is undesirable, and when the documented sensitivity and specificity of the oral fluid assay methodology to be used is considered sufficient for the purpose intended.

WHATS-3: An improved flow-through multi-bottle fluid sampler for deep-sea geofluid research

NASA Astrophysics Data System (ADS)

Miyazaki, Junichi; Makabe, Akiko; Matsui, Yohei; Ebina, Naoya; Tsutsumi, Saki; Ishibashi, Jun-ichiro; Chen, Chong; Kaneko, Sho; Takai, Ken; Kawagucci, Shinsuke

2017-06-01

Deep-sea geofluid systems, such as hydrothermal vents and cold seeps, are key to understanding subseafloor environments of Earth. Fluid chemistry, especially, provides crucial information towards elucidating the physical, chemical and biological processes that occur in these ecosystems. To accurately assess fluid and gas properties of deep-sea geofluids, well-designed pressure-tight fluid samplers are indispensable and as such they are important assets of deep-sea geofluid research. Here, the development of a new flow-through, pressure-tight fluid sampler capable of four independent sampling events (two subsamples for liquid and gas analyses from each) is reported. This new sampler, named WHATS-3, is a new addition to the WHATS-series samplers and a major upgrade from the previous WHATS-2 sampler with improvements in sample number, valve operational time, physical robustness, and ease of maintenance. Routine laboratory-based pressure tests proved that it is suitable for operation up to 35 MPa pressure. Successful field tests of the new sampler were also carried out in five hydrothermal fields, two in Indian Ocean and three in Okinawa Trough (max. depth 3,300 m). Relations of Mg and major ion species demonstrated bimodal mixing trends between a hydrothermal fluid and seawater, confirming the high-quality of fluids sampled. The newly developed WHATS-3 sampler is well-balanced in sampling capability, field usability, and maintenance feasibility, and can serve as one of the best geofluid samplers available at present to conduct efficient research of deep-sea geofluid systems.

Fingerprinting of bed sediment in the Tay Estuary, Scotland: an environmental magnetism approach

NASA Astrophysics Data System (ADS)

Jenkins, Pierre A.; Duck, Rob W.; Rowan, John S.; Walden, John

Sediment fingerprinting is commonly used for sediment provenance studies in lakes, rivers and reservoirs and on hillslopes and floodplains. This investigation explores the mixing of terrestrial and marine-derived sediment in the Tay Estuary, Scotland, using mineral magnetic attributes for fingerprinting. Samples representative of the estuary sediments and of four sources (end-members) were subjected to a suite of magnetic susceptibility and remanence measurements. Sediment samples from the beds of the Rivers Tay and Earn represented fluvial inputs while samples from the Angus and Fife coasts represented marine input. Multivariate discriminant and factor analysis showed that the sources could be separated on the basis of six magnetic parameters in a simple multivariate unmixing model to identify source contributions to estuarine bed sediments. Multi-domain magnetite signatures, characteristic of unweathered bedrock, dominate the magnetic measurements. Overall contributions of 3% from the River Earn, 17% from the River Tay, 29% from the Angus coast and 51% from the Fife coast source end-members, demonstrated the present-day regime of marine sediment derivation in the Tay Estuary. However, this conceals considerable spatial variability both along-estuary and in terms of sub-environments, with small-scale variations in sediment provenance reflecting local morphology, particularly areas of channel convergence.

Carbonate sediment deposits on the reef front around Oahu, Hawaii

USGS Publications Warehouse

Hampton, M.A.; Blay, C.T.; Murray, C.J.

2004-01-01

Large sediment deposits on the reff front around Oahu are a possible resource for replenishing eroded beaches. High-resolution subbottom profiles clearly depict the deposits in three study areas: Kailua Bay off the windward coast, Makua to Kahe Point off the leeward coast, and Camp Erdman to Waimea off the north coast. Most of the sediment is in water depths between 20 and 100 m, resting on submerged shelves created during lowstands of sea level. The mapped deposits have a volume of about 4 ?? 108 m3 in water depths less than 100 m, being thickest off the mouth of channels carved into the modern insular shelf, from which most of the sediment issues. Vibracore samples contain various amounts of sediment of similar size to the sand on Oahu beaches, with the most compatible prospects located off Makaha, Haleiwa, and Camp Erdman, and the least compatible ones located in Kailua Bay. Laboratory tests show a positive correlation of abrasion with Halimeda content: samples from Kailua Bay suffered high amounts of attrition, but others were comparable to tested beach samples. The common gray color of the offshore sediment, aesthetically undesirable for sand on popular tourist beaches, was diminished in the laboratory by soaking in heated hydrogen peroxide. ?? Taylor and Francis Inc.

Do blood parasites infect Magellanic penguins (Spheniscus magellanicus) in the wild? Prospective investigation and climatogeographic considerations.

PubMed

Vanstreels, Ralph Eric Thijl; Uhart, Marcela; Rago, Virginia; Hurtado, Renata; Epiphanio, Sabrina; Catão-Dias, José Luiz

2017-04-01

Magellanic penguins (Spheniscus magellanicus) are native to Argentina, Chile and the Falkland Islands. Magellanic penguins are highly susceptible to blood parasites such as the mosquito-borne Plasmodium spp., which have been documented causing high morbidity and mortality in zoos and rehabilitation centres. However, to date no blood parasites have been detected in wild Magellanic penguins, and it is not clear whether this is reflective of their true absence or is instead related to an insufficiency in sampling effort or a failure of the diagnostic methods. We examined blood smears of 284 Magellanic penguins from the Argentinean coast and tested their blood samples with nested polymerase chain reaction tests targeting Haemoproteus, Plasmodium, Leucocytozoon and Babesia. No blood parasites were detected. Analysing the sampling effort of previous studies and the climatogeography of the region, we found there is strong basis to conclude that haemosporidians do not infect wild Magellanic penguins on the Argentinean coast. However, at present it is not possible to determine whether such parasites occur on the Chilean coast and at the Falkland Islands. Furthermore, it is troubling that the northward distribution expansion of Magellanic penguins and the poleward distribution shift of vectors may lead to novel opportunities for the transmission of blood parasites.

Ultraviolet resonance Raman spectroscopy for the detection of cocaine in oral fluid

NASA Astrophysics Data System (ADS)

D'Elia, Valentina; Montalvo, Gemma; Ruiz, Carmen García; Ermolenkov, Vladimir V.; Ahmed, Yasmine; Lednev, Igor K.

2018-01-01

Detecting and quantifying cocaine in oral fluid is of significant importance for practical forensics. Up to date, mainly destructive methods or biochemical tests have been used, while spectroscopic methods were only applied to pretreated samples. In this work, the possibility of using resonance Raman spectroscopy to detect cocaine in oral fluid without pretreating samples was tested. It was found that ultraviolet resonance Raman spectroscopy with 239-nm excitation allows for the detection of cocaine in oral fluid at 10 μg/mL level. Further method development will be needed for reaching the practically useful levels of cocaine detection.

Isotachophoresis system having larger-diameter channels flowing into channels with reduced diameter and with selectable counter-flow

DOEpatents

Mariella, Jr., Raymond P.

2018-03-06

An isotachophoresis system for separating a sample containing particles into discrete packets including a flow channel, the flow channel having a large diameter section and a small diameter section; a negative electrode operably connected to the flow channel; a positive electrode operably connected to the flow channel; a leading carrier fluid in the flow channel; a trailing carrier fluid in the flow channel; and a control for separating the particles in the sample into discrete packets using the leading carrier fluid, the trailing carrier fluid, the large diameter section, and the small diameter section.

Etiology of parapneumonic effusion and pleural empyema in children. The role of conventional and molecular microbiological tests.

PubMed

Krenke, Katarzyna; Sadowy, Ewa; Podsiadły, Edyta; Hryniewicz, Waleria; Demkow, Urszula; Kulus, Marek

2016-07-01

An increasing incidence of parapneumonic effusion and pleural empyema (PPE/PE) has been reported in recent studies. As only few data on etiology of PPE/PE in Central Europe have been reported, we undertook a study on the etiology of PPE/PE in children, using both standard culture and molecular techniques. This prospective study was conducted between June 2011 and December 2013. Consecutive children with PPE/PE complicating community acquired pneumonia, who required diagnostic/therapeutic thoracentesis were included. Blood and pleural fluid samples for microbiological cultures were collected. Molecular methods were applied to identify Streptococcus pneumonia, Haemophilus influenzae, Staphylococcus aureus, Streptococcus pyogenes, Mycoplasma pneumoniae, Chlamydophila pneumoniae, and respiratory viruses in pleural fluid. The study group included 64 children, median age 4 (1-15). Seven of 64 (10.9%) blood cultures and 11 of 64 (17.2%) pleural fluid cultures revealed bacterial growth. The most common bacteria detected was S. pneumoniae (13 blood and pleural fluid samples from 11/64 (17.2%) children). DNA sequences of typical bacteria were found in 29/64 (45.3%) pleural fluid samples. S. pneumoniae was identified in 90% of these samples. The most common serotypes were: serotype 6B in 9/26 (36.6%), 19A in 6/26 (23%), serotype 3 in 3/26 (11.5%), 6A and 23F (both in 2/26 i.e. 7.7%) patients. Molecular methods identified atypical bacteria in 8/58 (13.8%) and respiratory viruses in 12/58 (20.7%) pleural fluid samples. S. pneumoniae, in particular serotype 6B and 19A, is the most common etiologic agent of PPE/PE in Polish children. The use of PCR significantly improves pathogen identification in pleural fluid. Copyright © 2016 Elsevier Ltd. All rights reserved.

Distribution of lithium in the Cordilleran Mantle wedge

NASA Astrophysics Data System (ADS)

Shervais, J. W.; Jean, M. M.; Seitz, H. M.

2015-12-01

Enriched fluid-mobile element (i.e., B, Li, Be) concentrations in peridotites from the Coast Range ophiolite are compelling evidence that this ophiolite originated in a subduction environment. A new method presented in Shervais and Jean (2012) for modeling the fluid enrichment process, represents the total addition of material to the mantle wedge source region and can be applied to any refractory mantle peridotite that has been modified by melt extraction and/or metasomatism. Although the end-result is attributed to an added flux of aqueous fluid or fluid-rich melt phase derived from the subducting slab, in the range of tens of parts per million - the nature and composition of this fluid could not be constrained. To address fluid(s) origins, we have analyzed Li isotopes in bulk rock peridotite and eclogite, and garnet separates, to identify possible sources, and fluid flow mechanisms and pathways. Bulk rock Li abundances of CRO peridotites (δ7Li = -14.3 to 5.5‰; 1.9-7.5 ppm) are indicative of Li addition and δ7Li-values are lighter than normal upper mantle values. However, Li abundances of clino- and orthopyroxene appear to record different processes operating during the CRO-mantle evolution. Low Li abundances in orthopyroxene (<1 ppm) suggest depletion via partial melting, whereas high concentrations in clinopyroxenes (>2 ppm) record subsequent interaction with Li-enriched fluids (or melts). The preferential partitioning of lithium in clinopyroxene could be indicative of a particular metasomatic agent, e.g., fluids from a dehydrating slab. Future in-situ peridotite isotope studies via laser ablation will further elucidate the fractionation of lithium between orthopyroxene, clinopyroxene, and serpentine. To obtain a more complete picture of the slab to arc transfer processes, we also measured eclogites and garnet separates to δ7Li= -18 to 3.5‰ (11.5-32.5 ppm) and δ7Li= 1.9 to 11.7‰ (0.7-3.9 ppm), respectively. In connection with previous studies focused on high-grade metamorphic assemblages within the Franciscan complex, an overall framework exists to reconstruct the Li architecture of the Middle Jurassic-Cordilleran subduction zone.

Quantification of Methylphenidate, Dexamphetamine, and Atomoxetine in Human Serum and Oral Fluid by HPLC With Fluorescence Detection.

PubMed

Stegmann, Benedikt; Dörfelt, Anett; Haen, Ekkehard

2016-02-01

For psychostimulants, a marked individual variability in the dose-response relationship and large differences in plasma concentrations after similar doses are known. Therefore, optimizing the efficacy of these drugs is at present the most promising way to exploit their full pharmacological potential. Moreover, it seems important to examine oral fluid as less invasive biological matrix for its benefit in therapeutic drug monitoring for patients with hyperkinetic disorder. A high-performance liquid chromatography method for quantification of methylphenidate (MPH), dexamphetamine (DXA), and atomoxetine in serum and oral fluid has been developed and validated. The analytical procedure involves liquid-liquid extraction, derivatization with 4-(4,5-diphenyl-1H-imidazol-2-yl)benzoyl chloride as a label and chromatographic separation on a Phenomenex Gemini-NX C18 analytical column using gradient elution with water-acetonitrile. The derivatized analytes were detected at 330 nm (excitation wavelength) and 440 nm (emission wavelength). To examine the oral fluid/serum ratios, oral fluid samples were collected simultaneously to blood samples from patients with hyperkinetic disorder. The method allows quantification of all analytes in serum and oral fluid within 16 minutes under the same or similar conditions. Oral fluid/serum ratios for MPH and DXA were highly variable and showed an accumulation of these drugs in oral fluid. The developed method covers the determination of MPH, DXA, and atomoxetine concentrations in serum and oral fluid after the intake of therapeutic doses. Oral fluid samples are useful for the qualitative detection of MPH and DXA.

Swirl of Clouds over the Pacific

NASA Image and Video Library

2017-12-08

Theodore von Kármán, a Hungarian-American physicist, was the first to describe the physical processes that create long chains of spiral eddies like the one shown above. Known as von Kármán vortices the patterns can form nearly anywhere that fluid flow is disturbed by an object. Since the atmosphere behaves like a fluid, the wing of an airplane, a bridge, even an island can trigger the distinctive phenomenon. On May 22, 2013, the Moderate Resolution Imaging Spectroradiometer (MODIS) on NASA’s Terra satellite captured this natural-color image of cloud vortices behind Isla Socorro, a volcanic island located in the Pacific Ocean. The island, which is located a few hundred kilometers off the west coast of Mexico and the southern tip of Baja California, is part of the Revillagigedo Archipelago. Satellite sensors have spotted von Kármán vortices around the globe, including off of Guadalupe Island, near the coast of Chile, in the Greenland Sea, in the Arctic, and even next to a tropical storm. NASA image courtesy Jeff Schmaltz, LANCE/EOSDIS MODIS Rapid Response Team at NASA GSFC. Caption by Adam Voiland. Instrument: Terra - MODIS More info: 1.usa.gov/14VSDQa Credit: NASA Earth Observatory NASA image use policy. NASA Goddard Space Flight Center enables NASA’s mission through four scientific endeavors: Earth Science, Heliophysics, Solar System Exploration, and Astrophysics. Goddard plays a leading role in NASA’s accomplishments by contributing compelling scientific knowledge to advance the Agency’s mission. Follow us on Twitter Like us on Facebook Find us on Instagram

Cytology exam of pleural fluid

MedlinePlus

... the lungs. This area is called the pleural space. Cytology means the study of cells. ... A sample of fluid from the pleural space is needed. The sample is taken using a procedure called thoracentesis . The procedure is done in the following way: You sit on a ...

ISO 15859 Propellant and Fluid Specifications: A Review and Comparison with Military and NASA Specifications

NASA Technical Reports Server (NTRS)

Greene, Ben; McClure, Mark B.; Baker, David L.

2006-01-01

This work presents an overview of the International Organization for Standardization (ISO) 15859 International Standard for Space Systems Fluid Characteristics, Sampling and Test Methods Parts 1 through 13 issued in June 2004. These standards establish requirements for fluid characteristics, sampling, and test methods for 13 fluids of concern to the propellant community and propellant characterization laboratories: oxygen, hydrogen, nitrogen, helium, nitrogen tetroxide, monomethylhydrazine, hydrazine, kerosene, argon, water, ammonia, carbon dioxide, and breathing air. A comparison of the fluid characteristics, sampling, and test methods required by the ISO standards to the current military and NASA specifications, which are in use at NASA facilities and elsewhere, is presented. Many ISO standards composition limits and other content agree with those found in the applicable parts of NASA SE-S-0073, NASA SSP 30573, military performance standards and details, and Compressed Gas Association (CGA) commodity specifications. The status of a current project managed at NASA Johnson Space Center White Sands Test Facility (WSTF) to rewrite these documents is discussed.

Microplastics in sediments from the littoral zone of the north Tunisian coast (Mediterranean Sea)

NASA Astrophysics Data System (ADS)

Abidli, Sami; Antunes, Joana C.; Ferreira, Joana L.; Lahbib, Youssef; Sobral, Paula; Trigui El Menif, Najoua

2018-05-01

The distribution of microplastics (MPs) was investigated in the sediments of five sampling sites from the northern Tunisian coast during June 2017. MPs were categorized according to type, colour and size. Representative MPs from the five sites were isolated for polymer identification using Fourier Transformed Infrared Spectroscopy in attenuated total reflectance mode (FTIR-ATR). Results showed that MPs were recovered, from all sediment samples, indicating for the first time, their extensive distribution in Tunisian coast. Concentrations varied from 141.20 ± 25.98 to 461.25 ± 29.74 items kg-1 dry weight. Fibres, fragments, Styrofoam®, pellets and films were the types registered in this study. With the exception of Menzel Bourguiba (MB), fibres significantly outnumbered plastic particles followed by fragments, Styrofoam®, films and pellets. The predominant colours are as follows: black > clear > white > red > blue > green for fibres, blue > white > clear > red > green > yellow > black for fragments, blue > white > black > clear for films while only white pellets and Styrofoam® were found. MPs particles ranged from 0.1 to 5 mm in length. A total of three polymer types were identified, polyethylene (PE), polypropylene (PP) and polystyrene (PS). Except for industrial pellets, the presence of MPs is likely due to the degradation of marine plastic debris accumulating in each site. This work provides original data of the presence of MPs in coastal sediments from Northern Tunisian coast.

Frequency and origin of haplotypes associated with the beta-globin gene cluster in individuals with trait and sickle cell anemia in the Atlantic and Pacific coastal regions of Colombia

PubMed Central

Fong, Cristian; Lizarralde-Iragorri, María Alejandra; Rojas-Gallardo, Diana; Barreto, Guillermo

2013-01-01

Sickle cell anemia is a genetic disease with high prevalence in people of African descent. There are five typical haplotypes associated with this disease and the haplotypes associated with the beta-globin gene cluster have been used to establish the origin of African-descendant people in America. In this work, we determined the frequency and the origin of haplotypes associated with hemoglobin S in a sample of individuals with sickle cell anemia (HbSS) and sickle cell hemoglobin trait (HbAS) in coastal regions of Colombia. Blood samples from 71 HbAS and 79 HbSS individuals were obtained. Haplotypes were determined based on the presence of variable restriction sites within the β-globin gene cluster. On the Pacific coast of Colombia the most frequent haplotype was Benin, while on the Atlantic coast Bantu was marginally higher than Benin. Eight atypical haplotypes were observed on both coasts, being more diverse in the Atlantic than in the Pacific region. These results suggest a differential settlement of the coasts, dependent on where slaves were brought from, either from the Gulf of Guinea or from Angola, where the haplotype distributions are similar. Atypical haplotypes probably originated from point mutations that lost or gained a restriction site and/or by recombination events. PMID:24385850

Gamma-emitting radionuclides in the shallow marine sediments off the Sindh coast, Arabian Sea.

PubMed

Akram, M; Qureshi, Riffat M; Ahmad, Nasir; Solaija, Tariq Jamal

2006-01-01

Determination of gamma emitting radionuclides in shallow marine sediments off the Sindh coast has been carried out using a gamma spectrometry technique. The activity concentration measured in various sediment samples off the Sindh coast has been found to vary from 15.93 +/- 5.22 to 30.53 +/- 4.70 Bq kg(-1) for 226Ra, from 11.72 +/- 1.22 to 33.94 +/- 1.86 Bq kg(-1) for 228Ra and from 295.22 +/- 32.83 to 748.47 +/- 28.75 Bq kg(-1) for 40K. The calculated mean values of radium equivalent activity, absorbed dose rate and effective dose are 98 Bq kg(-1), 49 nGy h(-1) and 0.06 mSv y(-1), respectively. No artificial radionuclide was detected in the samples measured from the study area. As no data on radioactivity of the coastal environment of Pakistan are available, the data presented here will serve as baseline information on radionuclide concentration in shallow sea sediments off the Sindh coast. The data will also be useful for tracking pollution inventories from unusual radiological events (if any) in the territorial waters of the study area. Further, the information presented will contribute to modelling of a regional radioactivity database from the perspectives of the International Atomic Energy Agency's Asia-Pacific Marine Radioactivity Database and Global Marine Radioactivity Database.

Volatile organic compound concentrations in the South Coast Air Basin (CA) during the summers of 1995 and 1996

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zielinska, B.; Harshfield, G.; Fujita, E.

1997-12-31

Volatile organic compounds (VOC) were measured in California`s South Coast Air Basin (SoCAB) during the summers of 1995 and 1996 in order to determine the air quality impacts of the introduction in 1996 of California`s Phase 2 reformulated gasoline (RFG). Over 250 canister and 2,4-dinitrophenylhydrazine (DNPH)-impregnated cartridge samples were collected during each sampling campaign at four sampling sites--two source-dominated sites, a downwind receptor site, and a background site. Canister samples were analyzed for methane, speciated volatile hydrocarbons (C{sub 2}-C{sub 12}), carbon monoxide (CO), carbon dioxide (CO{sub 2}), and methyl tert-butyl ether (MTBE). DNPH were analyzed for C{sub 1}-C{sub 7} carbonylmore » compounds. This paper examines the changes in concentrations of C{sub 2}-C{sub 12} hydrocarbons in the SoCAB resulting from the introduction of Phase 2 RFG with particular emphasis on hydrocarbon species that are most affected by the reformulation.« less

Occurrence of Vibrio parahaemolyticus and Vibrio vulnificus in retail raw oysters from the eastern coast of Thailand.

PubMed

Changchai, Nuttawee; Saunjit, Sudarat

2014-05-01

Occurrence, population density and virulence of Vibrio parahaemolyticus and V. vulnificus in 240 retail raw oysters collected monthly between March 2010 and February 2011 from Ang Sila coast, Chon Buri Province, Thailand were determined using most probable number (MPN) multiplex PCR. Multiplex PCR detected V. parahaemolyticus in 219 raw oyster samples, of which 29 samples contained the virulence tdh. MPN values for V. parahaemolyticus and pathogenic strains in most samples ranged from 10 to 10(2) and from 3 to 10 MPN/g, respectively. The presence of V. vulnificus was found in 53 oyster samples in amounts between 10 and 10(2) MPN/g. Of 1,087 V. parahaemolyticus isolates, 14 and 2 isolates carried tdh and virulence trh, respectively but none with both genes. However, none of the presumptive isolates was shown to be V. vulnificus. The detection of pathogenic V. parahaemolyticus and V. vulnificus in raw oysters has rendered high awareness of risk in consumption of raw or undercooked oysters.

Organotins in fish muscle and liver from the Polish coast of the Baltic Sea: Is the total ban successful?

PubMed

Filipkowska, Anna; Złoch, Ilona; Wawrzyniak-Wydrowska, Brygida; Kowalewska, Grażyna

2016-10-15

Muscle and liver tissues of nine fish species were analyzed to assess butyltin and phenyltin contamination. The samples were collected from three basins located in the Southern Baltic Sea coastal zone that each represent different potential for organotin pollution. Maximum total concentrations of butyltin compounds (BTs) in the fish muscles and livers were 715 and 1132ng Sn g(-1) d.w., respectively, whereas triphenyltin (TPhT) was not detected. In the muscle samples, the predominant compound in the sum of butyltins was tributyltin (TBT), while in the liver samples, tributyltin degradation products were found in the majority. The results demonstrate that 6-7years after the implementation of the total ban on harmful organotin use in antifouling paints, butyltins remain present in fishes from the Polish coast of the Baltic Sea. According to the HELCOM recommendation, eight samples exceeded the good environmental status boundary for tributyltin in seafood. Copyright © 2016 Elsevier Ltd. All rights reserved.

SELDI-TOF-MS proteomic profiling of serum, urine, and amniotic fluid in neural tube defects.

PubMed

Liu, Zhenjiang; Yuan, Zhengwei; Zhao, Qun

2014-01-01

Neural tube defects (NTDs) are common birth defects, whose specific biomarkers are needed. The purpose of this pilot study is to determine whether protein profiling in NTD-mothers differ from normal controls using SELDI-TOF-MS. ProteinChip Biomarker System was used to evaluate 82 maternal serum samples, 78 urine samples and 76 amniotic fluid samples. The validity of classification tree was then challenged with a blind test set including another 20 NTD-mothers and 18 controls in serum samples, and another 19 NTD-mothers and 17 controls in urine samples, and another 20 NTD-mothers and 17 controls in amniotic fluid samples. Eight proteins detected in serum samples were up-regulated and four proteins were down-regulated in the NTD group. Four proteins detected in urine samples were up-regulated and one protein was down-regulated in the NTD group. Six proteins detected in amniotic fluid samples were up-regulated and one protein was down-regulated in the NTD group. The classification tree for serum samples separated NTDs from healthy individuals, achieving a sensitivity of 91% and a specificity of 97% in the training set, and achieving a sensitivity of 90% and a specificity of 97% and a positive predictive value of 95% in the test set. The classification tree for urine samples separated NTDs from controls, achieving a sensitivity of 95% and a specificity of 94% in the training set, and achieving a sensitivity of 89% and a specificity of 82% and a positive predictive value of 85% in the test set. The classification tree for amniotic fluid samples separated NTDs from controls, achieving a sensitivity of 93% and a specificity of 89% in the training set, and achieving a sensitivity of 90% and a specificity of 88% and a positive predictive value of 90% in the test set. These suggest that SELDI-TOF-MS is an additional method for NTDs pregnancies detection.

Detection and molecular characterization of Giardia and Cryptosporidium in common dolphins (Delphinus delphis) stranded along the Galician coast (Northwest Spain).

PubMed

Reboredo-Fernández, A; Gómez-Couso, H; Martínez-Cedeira, J A; Cacciò, S M; Ares-Mazás, E

2014-05-28

The ubiquitous protozoan parasites Giardia and Cryptosporidium have been detected from many species of captive and free-living wildlife, representing most mammalian orders. Twenty species of marine mammals have been reported to inhabit Galician waters and the region has one of the highest rates of stranding in Europe. Evidence from stranding, reported by-catches and sightings, suggests that the common dolphin (Delphinus delphis) is the most abundant cetacean on the Galician coast (Northwest Spain). The objective of this study was to detect and molecularly characterize isolates of Giardia and Cryptosporidium obtained from common dolphins stranded in this area. Between 2005 and 2012, sections of large intestine from 133 common dolphins stranded along the Galician coast were collected by the personnel of the Galician Stranding Network (Coordinadora para o Estudo dos Mamíferos Mariños, CEMMA). Using direct immunofluorescence antibody test (IFAT) and PCR amplification and sequencing of the SSU-rDNA, β-giardin genes and the ITS1-5.8S-ITS2 region, Giardia and Cryptosporidium were detected in 8 (6.0%) and 12 samples (9.0%), respectively. In two samples, co-infection by both parasites was observed. The molecular characterization revealed the presence of Giardia duodenalis assemblages A (genotypes A1 and A2) and B and Cryptosporidium parvum in these samples. This constitutes the first study in which the presence of Giardia and Cryptosporidium has been investigated in common dolphins on the European Atlantic coast, and it is also the first report of C. parvum in this host. Our findings indicate that these animals could act as reservoir of these waterborne parasites or could be victims of the contamination originated by anthropogenic activities. Copyright © 2014 Elsevier B.V. All rights reserved.

Metals in Blood and Eggs of Green Sea Turtles (Chelonia mydas) from Nesting Colonies of the Northern Coast of the Sea of Oman.

PubMed

Sinaei, Mahmood; Bolouki, Mehdi

2017-11-01

The green sea turtle (Chelonia mydas) has been a species of global concern for decades. In this study, heavy metals (mercury: Hg; Cadmium: Cd; Lead: Pb; Copper: Cu; and Zinc: Zn) were measured in blood and three egg fraction of green sea turtles nesting on the northern coast of Sea of Oman. Heavy metals concentrations in blood, yolk, albumen, and egg shell ranged between 0.16-36.78, 0.006-33.88, 0.003-4.02, and 0.002-6.85 μg/g (ww), respectively. According to the results, all heavy metals found in blood samples (n = 12) also were detected in the various parts of the eggs (n = 48). Moreover, there were no significant differences between concentrations of heavy metals in different clutches laid in a nesting season. However, Pb concentrations in blood samples significantly increased in later clutches (p < 0.05), whereas Cu concentrations in blood samples exhibit a declining trend (p < 0.05). These results reveal the existence of maternal transfer phenomenon in green sea turtles on the northern coast of Sea of Oman. Results of this study suggest that heavy metals could be one of the factors influencing reductions in fertilization and hatching success. Results also indicate that green sea turtle on the northern coast of Sea of Oman have high capacity in rapid response and detoxification of heavy metals and/or from the low exposure levels of these turtles to the heavy metals. Further research is required concerning the effects of heavy metals on green sea turtles, especially on their possible influence of fetal development of turtles.

Occurrence and transport of total mercury and methyl mercury in the Sacramento River Basin, California

USGS Publications Warehouse

Domagalski, Joseph L.

1999-01-01

Mercury poses a water-quality problem for California's Sacramento River, a large river with a mean annual discharge of over 650 m3/s. This river discharges into the San Francisco Bay, and numerous fish species of the bay and river contain mercury levels high enough to affect human health if consumed. Two possible sources of mercury are the mercury mines in the Coast Ranges and the gold mines in the Sierra Nevada. Mercury was once mined in the Coast Ranges, west of the Sacramento River, and used to process gold in the Sierra Nevada, east of the river. The mineralogy of the Coast Ranges mercury deposits is mainly cinnabar (HgS), but elemental mercury was used to process gold in the Sierra Nevada. Residual mercury from mineral processing in the Sierra Nevada is mainly in elemental form or in association with oxide particles or organic matter and is biologically available. Recent bed-sediment sampling, at sites below large reservoirs, showed elevated levels of total mercury (median concentration 0.28 ??g/g) in every large river (the Feather, Yuba, Bear, and American rivers) draining the Sierra Nevada gold region. Monthly sampling for mercury in unfiltered water shows relatively low concentrations during the nonrainy season in samples collected throughout the Sacramento River Basin, but significantly higher concentrations following storm-water runoff. Measured concentrations, following storm-water runoff, frequently exceeded the state of California standards for the protection of aquatic life. Results from the first year of a 2-year program of sampling for methyl mercury in unfiltered water showed similar median concentrations (0.1 ng/l) at all sampling locations, but with apparent high seasonal concentrations measured during autumn and winter. Methyl mercury concentrations were not significantly higher in rice field runoff water, even though rice production involves the creation of seasonal wetlands: higher rates of methylation are known to occur in stagnant wetland environments that have high dissolved carbon.Mercury poses a water-quality problem for California's Sacramento River, a large river with a mean annual discharge of over 650 m3/s. This river discharges into the San Francisco Bay, and numerous fish species of the bay and river contain mercury levels high enough to affect human health if consumed. Two possible sources of mercury are the mercury mines in the Coast Ranges and the gold mines in the Sierra Nevada. Mercury was once mined in the Coast Ranges, west of the Sacramento River, and used to process gold in the Sierra Nevada east of the river. The mineralogy of the Coast Ranges mercury deposits is mainly cinnabar (HgS), but elemental mercury was used to process gold in the Sierra Nevada. Residual mercury from mineral processing in the Sierra Nevada is mainly in elemental form or in association with oxide particles or organic matter and is biologically available. Recent bed-sediment sampling, at sites below large reservoirs, showed elevated levels of total mercury (median concentration 0.28 ??g/g) in every large river (the Feather, Yuba, Bear, and American rivers) draining the Sierra Nevada gold region. Monthly sampling for mercury in unfiltered water shows relatively low concentrations during the nonrainy season in samples collected throughout the Sacramento River Basin, but significantly higher concentrations following storm-water runoff. Measured concentrations, following storm-water runoff, frequently exceeded the state of California standards for the protection of aquatic life. Results from the first year of a 2-year program of sampling for methyl mercury in unfiltered water showed similar median concentrations (0.1 ng/l) at all sampling locations, but with apparent high seasonal concentrations measured during autumn and winter. Methyl mercury concentrations were not significantly higher in rice field runoff water, even though rice production involves the creation of seasonal wetlands: higher rates of methylation a

Nitrate deposition and preservation in the snowpack along a traverse from coast to the ice sheet summit (Dome A) in East Antarctica

NASA Astrophysics Data System (ADS)

Shi, Guitao; Hastings, Meredith G.; Yu, Jinhai; Ma, Tianming; Hu, Zhengyi; An, Chunlei; Li, Chuanjin; Ma, Hongmei; Jiang, Su; Li, Yuansheng

2018-04-01

Antarctic ice core nitrate (NO3-) can provide a unique record of the atmospheric reactive nitrogen cycle. However, the factors influencing the deposition and preservation of NO3- at the ice sheet surface must first be understood. Therefore, an intensive program of snow and atmospheric sampling was made on a traverse from the coast to the ice sheet summit, Dome A, East Antarctica. Snow samples in this observation include 120 surface snow samples (top ˜ 3 cm), 20 snow pits with depths of 150 to 300 cm, and 6 crystal ice samples (the topmost needle-like layer on Dome A plateau). The main purpose of this investigation is to characterize the distribution pattern and preservation of NO3- concentrations in the snow in different environments. Results show that an increasing trend of NO3- concentrations with distance inland is present in surface snow, and NO3- is extremely enriched in the topmost crystal ice (with a maximum of 16.1 µeq L-1). NO3- concentration profiles for snow pits vary between coastal and inland sites. On the coast, the deposited NO3- was largely preserved, and the archived NO3- fluxes are dominated by snow accumulation. The relationship between the archived NO3- and snow accumulation rate can be depicted well by a linear model, suggesting a homogeneity of atmospheric NO3- levels. It is estimated that dry deposition contributes 27-44 % of the archived NO3- fluxes, and the dry deposition velocity and scavenging ratio for NO3- were relatively constant near the coast. Compared to the coast, the inland snow shows a relatively weak correlation between archived NO3- and snow accumulation, and the archived NO3- fluxes were more dependent on concentration. The relationship between NO3- and coexisting ions (nssSO42-, Na+ and Cl-) was also investigated, and the results show a correlation between nssSO42- (fine aerosol particles) and NO3- in surface snow, while the correlation between NO3- and Na+ (mainly associated with coarse aerosol particles) is not significant. In inland snow, there were no significant relationships found between NO3- and the coexisting ions, suggesting a dominant role of NO3- recycling in determining the concentrations.

Impact of Reservoir Fluid Saturation on Seismic Parameters: Endrod Gas Field, Hungary

NASA Astrophysics Data System (ADS)

El Sayed, Abdel Moktader A.; El Sayed, Nahla A.

2017-12-01

Outlining the reservoir fluid types and saturation is the main object of the present research work. 37 core samples were collected from three different gas bearing zones in the Endrod gas field in Hungary. These samples are belonging to the Miocene and the Upper - Lower Pliocene. These samples were prepared and laboratory measurements were conducted. Compression and shear wave velocity were measured using the Sonic Viewer-170-OYO. The sonic velocities were measured at the frequencies of 63 and 33 kHz for compressional and shear wave respectively. All samples were subjected to complete petrophysical investigations. Sonic velocities and mechanical parameters such as young’s modulus, rigidity, and bulk modulus were measured when samples were saturated by 100%-75%-0% brine water. Several plots have been performed to show the relationship between seismic parameters and saturation percentages. Robust relationships were obtained, showing the impact of fluid saturation on seismic parameters. Seismic velocity, Poisson’s ratio, bulk modulus and rigidity prove to be applicable during hydrocarbon exploration or production stages. Relationships among the measured seismic parameters in gas/water fully and partially saturated samples are useful to outline the fluid type and saturation percentage especially in gas/water transitional zones.

Archaeal Viruses Contribute to the Novel Viral Assemblage Inhabiting Oceanic, Basalt-Hosted Deep Subsurface Crustal Fluids

NASA Astrophysics Data System (ADS)

Nigro, O. D.; Rappe, M. S.; Jungbluth, S.; Lin, H. T.; Steward, G.

2015-12-01

Fluids contained in the basalt-hosted deep subsurface of the world's oceans represent one of the most inaccessible and understudied biospheres on earth. Recent improvements in sampling infrastructure have allowed us to collect large volumes of crustal fluids (~104 L) from Circulation Obviation Retrofit Kits (CORKs) placed in boreholes located on the eastern flank of the Juan de Fuca Ridge (JdFR). We detected viruses within these fluids by TEM and epifluorescence microscopy in samples collected from 2010 to 2014. Viral abundance, determined by epifluorescence counts, indicated that concentrations of viruses in subsurface basement fluids (~105 ml-1) are lower than the overlying seawater, but are higher in abundance than microbial cells in the same samples. Analysis of TEM images revealed distinct viral morphologies (rod and spindle-shaped) that resemble the morphologies of viral families infecting archaea. There are very few, if any, direct observations of these viral morphologies in marine samples, although they have been observed in enrichment cultures and their signature genes detected in metagenomic studies from hydrothermal vents and marine sediments. Analysis of metagenomes from the JdFR crustal fluids revealed sequences with homology to archaeal viruses from the rudiviridae, bicaudaviridae and fuselloviridae. Prokaryotic communities in fluids percolating through the basaltic basement rock of the JdFR flank are distinct from those inhabiting the overlying sediments and seawater. Similarly, our data support the idea that the viral assemblage in these fluids is distinct from viral assemblages in other marine and terrestrial aquatic environments. Our data also suggest that viruses contribute to the mortality of deep subsurface prokaryotes through cell lysis, and viruses may alter the genetic potential of their hosts through the processes of lysogenic conversion and horizontal gene transfer.

Prevalence and relevance of antibodies to type-I and -II collagen in synovial fluid of dogs with cranial cruciate ligament damage.

PubMed

de Rooster, H; Cox, E; van Bree, H

2000-11-01

To measure and compare synovial fluid antibody titers to type-I and -II collagen in stifle joints with instability caused by complete or partial cranial cruciate ligament (CCL) rupture and joints with osteoarthrosis secondary to other pathologic changes in dogs. 82 dogs with diseased stifle joints. Synovial fluid samples were collected from 7 dogs with clinically normal stifles (control group) and 82 dogs with diseased joints (50 stifle joints with complete rupture of the CCL, 20 with partial damage of the CCL, and 12 joints with radiographic signs of osteoarthritis secondary to other arthropathies). Synovial fluid samples were tested for autoantibodies to type-I and -II collagen by an ELISA. In dogs with complete and partial CCL rupture, synovial fluid antibody titers to type-I and -II collagen were significantly increased, compared with control dogs. Forty-eight percent (24/50) of samples from dogs with complete CCL rupture and 35% (7/20) of samples from dogs with partial CCL rupture had antibody titers to type-I collagen that were greater than the mean plus 2 standard deviations of the control group titers. Synovial fluid antibody titers to type-II collagen were high in 40% of the dogs with partial or (8/20) complete (20/50) CCL rupture. Dogs with osteoarthrosis secondary to other pathologic changes had significantly increased synovial fluid antibodies to type-I and -II collagen, compared with control dogs. Increases in autoantibodies to collagen in synovial fluid are not specific for the type of joint disorder. It is unlikely that the anticollagen antibodies play an active role in the initiation of weakening of the CCL.

Investigation of mud density and weighting materials effect on drilling fluid filter cake properties and formation damage

NASA Astrophysics Data System (ADS)

Fattah, K. A.; Lashin, A.

2016-05-01

Drilling fluid density/type is an important factor in drilling and production operations. Most of encountered problems during rotary drilling are related to drilling mud types and weights. This paper aims to investigate the effect of mud weight on filter cake properties and formation damage through two experimental approaches. In the first approach, seven water-based drilling fluid samples with same composition are prepared with different densities (9.0-12.0 lb/gal) and examined to select the optimum mud weight that has less damage. The second approach deals with investigating the possible effect of the different weighting materials (BaSO4 and CaCO3) on filter cake properties. High pressure/high temperature loss tests and Scanning Electron Microscopy (SEM) analyses were carried out on the filter cake (two selected samples). Data analysis has revealed that mud weigh of 9.5 lb/gal has the less reduction in permeability of ceramic disk, among the seven used mud densities. Above 10.5 ppg the effect of the mud weight density on formation damage is stabilized at constant value. Fluids of CaCO3-based weighting material, has less reduction in the porosity (9.14%) and permeability (25%) of the filter disk properties than the BaSO4-based fluid. The produced filter cake porosity increases (from 0.735 to 0.859) with decreasing of fluid density in case of drilling samples of different densities. The filtration loss tests indicated that CaCO3 filter cake porosity (0.52) is less than that of the BaSO4 weighted material (0.814). The thickness of the filter cake of the BaSO4-based fluid is large and can cause some problems. The SEM analysis shows that some major elements do occur on the tested samples (Ca, Al, Si, and Ba), with dominance of Ca on the expense of Ba for the CaCO3 fluid sample and vice versa. The less effect of 9.5 lb/gal mud sample is reflected in the well-produced inter-particle pore structure and relatively crystal size. A general recommendation is given to minimize the future utilization of Barium Sulfate as a drilling fluid.

DATA QUALITY OBJECTIVES FOR SELECTING WASTE SAMPLES FOR THE BENCH STEAM REFORMER TEST

DOE Office of Scientific and Technical Information (OSTI.GOV)

BANNING DL

2010-08-03

This document describes the data quality objectives to select archived samples located at the 222-S Laboratory for Fluid Bed Steam Reformer testing. The type, quantity and quality of the data required to select the samples for Fluid Bed Steam Reformer testing are discussed. In order to maximize the efficiency and minimize the time to treat Hanford tank waste in the Waste Treatment and Immobilization Plant, additional treatment processes may be required. One of the potential treatment processes is the fluid bed steam reformer (FBSR). A determination of the adequacy of the FBSR process to treat Hanford tank waste is required.more » The initial step in determining the adequacy of the FBSR process is to select archived waste samples from the 222-S Laboratory that will be used to test the FBSR process. Analyses of the selected samples will be required to confirm the samples meet the testing criteria.« less

Faunistic survey of Hydromedusae (Cnidaria, Medusozoa) from the coast of Paraná State, Southern Brazil.

PubMed

Nagata, Renato Mitsuo; Júnior, Miodeli Nogueira; Haddad, Maria Angélica

2014-02-26

This study is the first faunistic inventory of hydromedusae from the inner continental shelf of Paraná State. We describe the composition of hydromedusae species, collected with bottom-trawl and Hensen nets, in campaigns carried out from 1997 to 2006. We analyzed 17,797 specimens from 578 samples, and provide descriptions, photographs, and information about the biology of the 22 species found. All species had previous records from the Brazilian coast; however, this is the first record of Bougainvillia frondosa, Ectopleura dumortieri, Cirrholovenia tetranema, Eucheilota maculata, Gossea brachymera, Solmaris corona, and Amphogona apsteini for the coast of Paraná. Most species are typical of tropical and subtropical coastal waters from the South Brazilian Bight. However, Turritopsis nutricula, Niobia dendrotentaculata, Solmaris corona, and Aglaura hemistoma are abundant in oceanic waters, and Olindias sambaquiensis and Solmaris corona are associated with colder waters (<20°C). The current number of species known for the state is 26. Additional collection effort is needed in regions not sampled in this work, such as bays and offshore waters.

Modification of the quality of water injected into Louisiana gulf coast sands: Effects of cation exchange

NASA Astrophysics Data System (ADS)

Hanor, Jeffrey S.

1982-06-01

Interest in artificially recharging selected shallow sands in South Louisiana with fresh water has been stimulated by the desire to retard contamination of municipal groundwater supplies by brackish water, to retard ground subsidence and decrease pumping lifts, and to develop emergency subsurface supplies of potable water for communities dependent on surface waters susceptible to contamination. Results of field experiments, laboratory work, and model calculations demonstrate that ion exchange reactions involving clays dispersed in aquifer sands can be expected to modify significantly the composition of waters injected into Gulf Coast sediments. As little as 0.1 weight percent smectite (montmorillonite) can remove, by exchange with absorbed Na, a significant fraction of the dissolved Ca and Mg present in the injected water. The hardness of the water is thus reduced, which may be a desirable modification in water quality. Exchange occurs as fast as the fluids can be pumped into or out of the aquifer, and the water-softening capacity of the aquifer can be restored by allowing sodium-rich native pore waters to sweep back over the dispersed clays. Each acre of an aquifer 50 feet thick and containing 0.1 wt % smectite could soften half a million gallons of injected Mississippi River water. Many individual Gulf Coast aquifers underlie tens of thousands of acres, and their potential softening capacity is thus enormous. Additional exchange processes involving adjacent aquitard shales presumably will operate over long-term periods. It is possible that Gulf Coast aquifers will be used at some point in the future as processing plants to treat injected water to improve its quality for a variety of municipal and industrial purposes.

Results of a magnetotelluric traverse across western Oregon: crustal resistivity structure and the subduction of the Juan de Fuca plate

NASA Astrophysics Data System (ADS)

Waff, Harve S.; Rygh, John T.; Livelybrooks, Dean W.; Clingman, William W.

1988-02-01

As part of project EMSLAB, we have collected and analysed wideband magnetotelluric data along an east-west transect in western Oregon. Preliminary modelling of the data using one-dimensional inversions based upon rotationally-invariant earth response functions was followed by finite-element two-dimensional modelling. The models produced indicate the presence of an electrical conductor beneath the Oregon Coast Range dipping eastward at 12-18° from a depth of 23-32 km. We believe that this conductor includes the thrust surface of the subducting Juan de Fuca plate and/or adjacent water-saturated rocks. Its high conductance (about 200 S) is thought to be due to one or more of the following mechanisms: (1) sediments subducted atop and with the Juan de Fuca plate, (2) saline fluids produced by dehydration of the former, or (3) seawater contained within subducted oceanic basalts. There is a distinct possibility that the high conductivity is due primarily to the presence of subducted sediments, in contrast with the notion that the subduction of young, buoyant lithosphere retards sediment subduction at this convergent margin. The conductive layer is overlain by relatively resistive rocks presumed to be accreted oceanic lithosphere. Model-determined resistivities for the upper part of the Coast Range section are in good agreement with deep well-log data. A strong electrical contrast appears in the determinant phase pseudosection between the Coast Range and the Willamette Valley suggesting a structural boundary between the two provinces. A surficial conductor is present in the valley to depths of 1-2 km and is due to alluvial fill. Induction arrow data show the geomagnetic coast effect and a smaller effect by the Willamette Valley alluvial fill.

Peritoneal fluid analysis

MedlinePlus

... at fluid that has built up in the space in the abdomen around the internal organs. This area is called the peritoneal space. ... sample of fluid is removed from the peritoneal space using a needle and syringe. Ultrasound is often ...

Hydrodynamic focusing investigation in a micro-flow cytometer.

PubMed

Yang, An-Shik; Hsieh, Wen-Hsin

2007-04-01

Hydrodynamic focusing behavior is characterized by two fluids coflowing at different velocities inside a micro-flow cytometer. In this study, a two-fluid model has been established to describe the flow transport behavior and interaction of sample and sheath fluids. The analysis treats the sample and sheath fluids as two-dimensional, laminar, incompressible, and isothermal. The theoretical model comprises two groups of transient conservation equations of mass and momentum with consideration of the interfacial momentum exchange. The governing equations are solved numerically through an iterative SIMPLEC algorithm to determine the flow properties. Since the ratio of the sheath velocity to the sample velocity varies from 5 to 70, the predicted focusing width and length are in good agreement with the experimental data in the literature. In addition, the present study explored the hydrodynamic focusing flowfield as well as the pressure drop across a micro-flow cytometer and the time needed for the completion of one focusing event in detail. To enhance the understanding of hydrodynamic focusing in the design of cytometers, ten numerical experiments were conducted to examine the effects of the inner nozzle length, inner nozzle exit width, inner nozzle shape, and fluid properties on the width of the focused sample stream.

Investigation of particle lateral migration in sample-sheath flow of viscoelastic fluid and Newtonian fluid.

PubMed

Yuan, Dan; Zhang, Jun; Yan, Sheng; Peng, Gangrou; Zhao, Qianbin; Alici, Gursel; Du, Hejun; Li, Weihua

2016-08-01

In this work, particle lateral migration in sample-sheath flow of viscoelastic fluid and Newtonian fluid was experimentally investigated. The 4.8-μm micro-particles were dispersed in a polyethylene oxide (PEO) viscoelastic solution, and then the solution was injected into a straight rectangular channel with a deionised (DI) water Newtonian sheath flow. Micro-particles suspended in PEO solution migrated laterally to a DI water stream, but migration in the opposite direction from a DI water stream to a PEO solution stream or from one DI water stream to another DI water stream could not be achieved. The lateral migration of particles depends on the viscoelastic properties of the sample fluids. Furthermore, the effects of channel length, flow rate, and PEO concentration were studied. By using viscoelastic sample flow and Newtonian sheath flow, a selective particle lateral migration can be achieved in a simple straight channel, without any external force fields. This particle lateral migration technique could be potentially used in solution exchange fields such as automated cell staining and washing in microfluidic platforms, and holds numerous biomedical applications. © 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Radioactivity concentrations in sediments on the coast of the Iranian province of Khuzestan in the Northern Persian Gulf.

PubMed

Pourahmad, Jalal; Motallebi, Abbasali; Asgharizadeh, Farid; Eskandari, Gholam Reza; Shafaghi, Bijan

2008-10-01

Gamma-ray spectrometric analyses were performed on sediment samples from the coast of Khuzestan province (south west of Iran, neighbor to Iraq and Kuwait) to study the concentration of natural as well as man-made radioactive sources. The coast of Khuzestan, which extends for approximately 400 km is mainly soft areas of mud flats within different ecosystems including river mouth, estuaries, creeps, and small bays. Suspended material from the Iranian rivers including Arvand (Karun), Bahmanshir, Jarrahi, and Zohreh has settled to form these extensive soft areas. Eighty three samples were taken at different points along the coast in undisturbed areas at intervals of about 5 km since Fall 2005 to Winter 2006. Collection was carried out during low-tide, where it was possible to collect sediments from the wet region that was covered by sea water during the high tide. At each of the sample sites, a sampling area of about 1 m(2) was considered. All samples were of a muddy nature, and were left to dry in open air before drying in the oven at 105 degrees C for 2-3 days to remove all water content. The average activity concentration of the radionuclides (226)Ra (30 Bq/Kg), (232)Th (11 Bq/kg), (238)U (18 Bq/kg), and (137)Cs (2.6 Bq/kg) along the shore of Khuzestan reaches are much less than the values commonly assigned as the world average. Nevertheless in case of (40)K which is a long lived naturally occurring radionuclide, the result (481 Bq/kg) was higher than the world average which could be due to a large Kuwaiti oil spill and also fallout and deposition of tremendous amount of fly ashes which resulted from ignited Kuwaiti oil fields during the 2nd Persian Gulf war (1990-91). For man-made (137)Cs and naturally occurring (232)Th, the western and eastern parts of Khuzestan shore showed higher concentrations than the middle part (Khooriat or creeps). For the long lived naturally occurring radionuclide (40)K and Gulf war (238)U (anti armor shells), there were no significant differences (P < 0.05) among the three regions.

Measurements of Mercury in Rain and Fog Water from the Central Coast of California Measurements of Mercury in Rain and Fog Water from the Central Coast of California

NASA Astrophysics Data System (ADS)

Flegal, A. R.; Weiss-Penzias, P. S.; Ortiz, C.; Acosta, P.; Ryan, J. P.; Collett, J. L.

2011-12-01

Mercury (Hg) is a toxic element that can bioaccumulate in higher trophic level aquatic organisms and poses a health risk to humans and wildlife who consume those organisms. This widespread problem is exemplified by a recent survey of game fish from 152 California Lakes, which found that at least one species in 74% of the lakes sampled exceeded the lowest health threshold for methylmercury. The atmosphere is known to be an important pathway for transport of anthropogenic and natural Hg emissions sources. In this study, we investigated wet deposition of Hg through the precipitation of fog and rain water on the Central Coast of California. Fog (or marine stratus) is common on the California Central Coast and is a significant contributor to the hydrologic cycle, yet concentrations of Hg in fog have not previously been measured in this region. Our samples were collected from a small boat in the Monterey Bay, at the harbor in Moss Landing, and from a rooftop on the University of California, Santa Cruz campus, during June - July 2011 using a Caltech Active Strand Cloud Water Collector-2 that has been used previously for collection of Hg samples. Aqueous samples were analyzed for total Hg using EPA method 1631. Rainwater samples were also collected in Santa Cruz between March and June 2011. Hg concentrations ranged from 1-19 ng/L in fog and from 1-3 ng/L in rain. A previous study in Santa Cruz found a wider range of 2-18 ng/L Hg in rain, and previous studies of Hg in fog from the U.S. and Canada reported concentrations of 2-430 ng/L. Thus, our results are consistent with previous findings that Hg concentrations in fog water are at least as high, if not higher than Hg concentrations in rain. This suggests that in environments where fog is an important contributor to total precipitation, like coastal California, a significant fraction of Hg wet deposition may be occurring via fog precipitation.

DNA methylation profiling for a confirmatory test for blood, saliva, semen, vaginal fluid and menstrual blood.

PubMed

Lee, Hwan Young; Jung, Sang-Eun; Lee, Eun Hee; Yang, Woo Ick; Shin, Kyoung-Jin

2016-09-01

The ability to predict the type of tissues or cells from molecular profiles of crime scene samples has important practical implications in forensics. A previously reported multiplex assay using DNA methylation markers could only discriminate between 4 types of body fluids: blood, saliva, semen, and the body fluid which originates from female reproductive organ. In the present study, we selected 15 menstrual blood-specific CpG marker candidates based on analysis of 12 genome-wide DNA methylation profiles of vaginal fluid and menstrual blood. The menstrual blood-specificity of the candidate markers was confirmed by comparison with HumanMethylation450 BeadChip array data obtained for 58 samples including 12 blood, 12 saliva, 12 semen, 3 vaginal fluid, and 19 skin epidermis samples. Among 15CpG marker candidates, 3 were located in the promoter region of the SLC26A10 gene, and 2 of them (cg09696411 and cg18069290) showed high menstrual blood specificity. DNA methylation at the 2CpG markers was further tested by targeted bisulfite sequencing of 461 additional samples including 49 blood, 52 saliva, 34 semen, 125 vaginal fluid, and 201 menstrual blood. Because the 2 markers showed menstrual blood-specific methylation patterns, we modified our previous multiplex methylation SNaPshot reaction to include these 2 markers. In addition, a blood marker cg01543184 with cross reactivity to semen was replaced with cg08792630, and a semen-specific unmethylation marker cg17621389 was removed. The resultant multiplex methylation SNaPshot allowed positive identification of blood, saliva, semen, vaginal fluid and menstrual blood using the 9CpG markers which show a methylation signal only in the target body fluids. Because of the complexity in cell composition, menstrual bloods produced DNA methylation profiles that vary with menstrual cycle and sample collection methods, which are expected to provide more insight into forensic menstrual blood test. Moreover, because the developed multiplex methylation SNaPshot reaction includes the 4CpG markers of which specificities have been confirmed by multiple studies, it will facilitate confirmatory tests for body fluids that are frequently observed in forensic casework. Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.

Geographic Distribution of Leishmania Species in Ecuador Based on the Cytochrome B Gene Sequence Analysis.

PubMed

Kato, Hirotomo; Gomez, Eduardo A; Martini-Robles, Luiggi; Muzzio, Jenny; Velez, Lenin; Calvopiña, Manuel; Romero-Alvarez, Daniel; Mimori, Tatsuyuki; Uezato, Hiroshi; Hashiguchi, Yoshihisa

2016-07-01

A countrywide epidemiological study was performed to elucidate the current geographic distribution of causative species of cutaneous leishmaniasis (CL) in Ecuador by using FTA card-spotted samples and smear slides as DNA sources. Putative Leishmania in 165 samples collected from patients with CL in 16 provinces of Ecuador were examined at the species level based on the cytochrome b gene sequence analysis. Of these, 125 samples were successfully identified as Leishmania (Viannia) guyanensis, L. (V.) braziliensis, L. (V.) naiffi, L. (V.) lainsoni, and L. (Leishmania) mexicana. Two dominant species, L. (V.) guyanensis and L. (V.) braziliensis, were widely distributed in Pacific coast subtropical and Amazonian tropical areas, respectively. Recently reported L. (V.) naiffi and L. (V.) lainsoni were identified in Amazonian areas, and L. (L.) mexicana was identified in an Andean highland area. Importantly, the present study demonstrated that cases of L. (V.) braziliensis infection are increasing in Pacific coast areas.

Environmental quality of Korean coasts as determined by modified Shannon-Wiener evenness proportion.

PubMed

Yoo, Jae-Won; Lee, Yong-Woo; Ruesink, Jennifer L; Lee, Chang-Gun; Kim, Chang-Soo; Park, Mi-Ra; Yoon, Kon-Tak; Hwang, In-Seo; Maeng, Jun-Ho; Rosenberg, Rutger; Hong, Jae-Sang

2010-11-01

The coast of the Korean peninsula experiences a range of human impacts, including pollution, shipping, reclamation, and aquaculture, that have motivated numerous local studies of macrobenthic organisms. In this paper, 1,492 subtidal stations were compiled from 23 studies (areas) to evaluate environmental quality on a broader scale. A common index in biomonitoring, Shannon-Wiener evenness proportion (SEP), could not incorporate azoic or single-species samples. This shortcoming was overcome by developing an inverse function of SEP (ISEP), which was positively correlated with independent measures of water quality available for nine sites and was not biased by the size of the sampling unit. Additionally, at Shihwa Dike, where samples were collected before and after reinstating a tidal connection with the ocean, ISEP values improved over time, as expected. Thus, it is now possible to assign Korean subtidal sites to seven ISEP "grades" and to use their values and trends to guide coastal management.

Geochemistry of High Temperature Vent Fluids in Yellowstone Lake: Dissolved Carbon and Sulfur Concentrations and Isotopic Data

NASA Astrophysics Data System (ADS)

Cino, C.; Seyfried, W. E., Jr.; Tan, C.; Fu, Q.

2017-12-01

Yellowstone National Park is a dynamic environment home to an array of geysers, hot springs, and hydrothermal vents fueled by the underlying continental magmatic intrusion. Yellowstone Lake vent fluids accounts for approximately 10% of the total geothermal flux for all of Yellowstone National Park. Though studying this remote hydrothermal system poses severe challenges, it provides an excellent natural laboratory to research hydrothermal fluids that undergo higher pressure and temperature conditions in an environment largely shielded from atmospheric oxygen. The location of these vents also provides chemistry that is characteristic of fluids deeper in the Yellowstone hydrothermal system. In August 2016, hydrothermal fluids were collected from the Stevenson Island vents in collaboration with the Hydrothermal Dynamics of Yellowstone Lake (HD-YLAKE) project using novel sampling techniques and monitoring instrumentation. The newly built ROV Yogi was deployed to reach the vents in-situ with temperatures in excess of 151oC at 100-120 m depth, equipped with a 12-cylinder isobaric sampler to collect the hydrothermal fluids. Results from geochemical analyses indicate the fluids are rich in gases such as CO2, CH4, and H2S, with sample concentrations of approximately 12 mM, 161 μm, and 2.1 mM respectively. However, lake water mixing with the hydrothermal endmember fluid likely diluted these concentrations in the collected samples. Isotopic analyses indicate CO2 has a δ13C of -6 indicating magmatic origins, however the CH4 resulted in a δ13C of -65 which is in the biological range. This biogenic signature is likely due to the pyrolysis of immature organic matter in the lake bottom sediment, since the high temperatures measured for the fluids would not allow the presence of methanogens. H2S concentrations have not been previously measured for the hydrothermal fluids in Yellowstone Lake, and our vent fluid samples indicate significantly higher H2S concentrations than reported for subaerial vents. The cause of these measured high dissolved H2S concentrations in Yellowstone Lake may result from temperature and/or redox effects.

Microbial life in cold, hydrologically active oceanic crustal fluids

NASA Astrophysics Data System (ADS)

Meyer, J. L.; Jaekel, U.; Girguis, P. R.; Glazer, B. T.; Huber, J. A.

2012-12-01

It is estimated that at least half of Earth's microbial biomass is found in the deep subsurface, yet very little is known about the diversity and functional roles of these microbial communities due to the limited accessibility of subseafloor samples. Ocean crustal fluids, which may have a profound impact on global nutrient cycles given the large volumes of water moving through the crustal aquifer, are particularly difficult to sample. Access to uncontaminated ocean crustal fluids is possible with CORK (Circulation Obviation Retrofit Kit) observatories, installed through the Integrated Ocean Drilling Program (IODP). Here we present the first microbiological characterization of the formation fluids from cold, oxygenated igneous crust at North Pond on the western flank of the Mid Atlantic Ridge. Fluids were collected from two CORKs installed at IODP boreholes 1382A and 1383C and include fluids from three different depth horizons within oceanic crust. Collection of borehole fluids was monitored in situ using an oxygen optode and solid-state voltammetric electrodes. In addition, discrete samples were analyzed on deck using a comparable lab-based system as well as a membrane-inlet mass spectrometer to quantify all dissolved volatiles up to 200 daltons. The instruments were operated in parallel and both in situ and shipboard geochemical measurements point to a highly oxidized fluid, revealing an apparent slight depletion of oxygen in subsurface fluids (~215μM) relative to bottom seawater (~245μM). We were unable to detect reduced hydrocarbons, e.g. methane. Cell counts indicated the presence of roughly 2 x 10^4 cells per ml in all fluid samples, and DNA was extracted and amplified for the identification of both bacterial and archaeal community members. The utilization of ammonia, nitrate, dissolved inorganic carbon, and acetate was measured using stable isotopes, and oxygen consumption was monitored to provide an estimate of the rate of respiration per cell per day. These results provide the first dataset describing the diversity of microbes present in cold, oxygenated ocean crustal fluids and the biogeochemical processes they mediate in the subseafloor.

Determination of paralytic shellfish toxins in shellfish by receptor binding assay: collaborative study.

PubMed

Van Dolah, Frances M; Fire, Spencer E; Leighfield, Tod A; Mikulski, Christina M; Doucette, Gregory J

2012-01-01

A collaborative study was conducted on a microplate format receptor binding assay (RBA) for paralytic e shellfish toxins (PST). The assay quantifies the composite PST toxicity in shellfish samples based on the ability of sample extracts to compete with (3)H saxitoxin (STX) diHCl for binding to voltage-gated sodium channels in a rat brain membrane preparation. Quantification of binding can be carried out using either a microplate or traditional scintillation counter; both end points were included in this study. Nine laboratories from six countries completed the study. One laboratory analyzed the samples using the precolumn oxidation HPLC method (AOAC Method 2005.06) to determine the STX congener composition. Three laboratories performed the mouse bioassay (AOAC Method 959.08). The study focused on the ability of the assay to measure the PST toxicity of samples below, near, or slightly above the regulatory limit of 800 (microg STX diHCl equiv./kg). A total of 21 shellfish homogenates were extracted in 0.1 M HCl, and the extracts were analyzed by RBA in three assays on separate days. Samples included naturally contaminated shellfish samples of different species collected from several geographic regions, which contained varying STX congener profiles due to their exposure to different PST-producing dinoflagellate species or differences in toxin metabolism: blue mussel (Mytilus edulis) from the U.S. east and west coasts, California mussel (Mytilus californianus) from the U.S. west coast, chorito mussel (Mytilus chiliensis) from Chile, green mussel (Perna canaliculus) from New Zealand, Atlantic surf clam (Spisula solidissima) from the U.S. east coast, butter clam (Saxidomus gigantea) from the west coast of the United States, almeja clam (Venus antiqua) from Chile, and Atlantic sea scallop (Plactopecten magellanicus) from the U.S. east coast. All samples were provided as whole animal homogenates, except Atlantic sea scallop and green mussel, from which only the hepatopancreas was homogenized. Among the naturally contaminated samples, five were blind duplicates used for calculation of RSDr. The interlaboratory RSDR of the assay for 21 samples tested in nine laboratories was 33.1%, yielding a HorRat value of 2.0. Removal of results for one laboratory that reported systematically low values resulted in an average RSDR of 28.7% and average HorRat value of 1.8. Intralaboratory RSDr based on five blind duplicate samples tested in separate assays, was 25.1%. RSDr obtained by individual laboratories ranged from 11.8 to 34.9%. Laboratories that are routine users of the assay performed better than nonroutine users, with an average RSDr of 17.1%. Recovery of STX from spiked shellfish homogenates was 88.1-93.3%. Correlation with the mouse bioassay yielded a slope of 1.64 and correlation coefficient (r(2)) of 0.84, while correlation with the precolumn oxidation HPLC method yielded a slope of 1.20 and an r(2) of 0.92. When samples were sorted according to increasing toxin concentration (microg STX diHCl equiv./kg) as assessed by the mouse bioassay, the RBA returned no false negatives relative to the 800 microg STX diHCl equiv./kg regulatory limit for shellfish. Currently, no validated methods other than the mouse bioassay directly measure a composite toxic potency for PST in shellfish. The results of this interlaboratory study demonstrate that the RBA is suitable for the routine determination of PST in shellfish in appropriately equipped laboratories.

Portable Suction Lysimeter

DOEpatents

Hubbell, Joel M.; Sisson, James B.

2004-07-13

A portable lysimeter including a collection vessel having an inflatable bladder and a semi-permeable member assembly at least partially movable in response to inflation of the bladder, a sample conduit in fluid communication with the semi-permeable member and a reservoir in fluid communication with the sample conduit.

Electric field effects on a near-critical fluid in microgravity

NASA Technical Reports Server (NTRS)

Zimmerli, G.; Wilkinson, R. A.; Ferrell, R. A.; Hao, H.; Moldover, M. R.

1994-01-01

The effects of an electric field on a sample of SF6 fluid in the vicinity of the liquid-vapor critical point is studied. The isothermal increase of the density of a near-critical sample as a function of the applied electric field was measured. In agreement with theory, this electrostriction effect diverges near the critical point as the isothermal compressibility diverges. Also as expected, turning on the electric field in the presence of density gradients can induce flow within the fluid, in a way analogous to turning on gravity. These effects were observed in a microgravity environment by using the Critical Point Facility which flew onboard the Space Shuttle Columbia in July 1994 as part of the Second International Microgravity Laboratory Mission. Both visual and interferometric images of two separate sample cells were obtained by means of video downlink. The interferometric images provided quantitative information about the density distribution throughout the sample. The electric field was generated by applying 500 Volts to a fine wire passing through the critical fluid.

Method and apparatus for probing relative volume fractions

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jandrasits, W.G.; Kikta, T.J.

1996-12-31

A relative volume fraction probe particularly for use in a multiphase fluid system includes two parallel conductive paths defining there between a sample zone within the system. A generating unit generates time varying electrical signals which are inserted into one of the two parallel conductive paths. A time domain reflectometer receives the time varying electrical signals returned by the second of the two parallel conductive paths and, responsive thereto, outputs a curve of impedance versus distance. An analysis unit then calculates the area under the curve, subtracts the calculated area from an area produced when the sample zone consists entirelymore » of material of a first fluid phase, and divides this calculated difference by the difference between an area produced when the sample zone consists entirely of material of the first fluid phase and an area produced when the sample zone consists entirely of material of a second fluid phase. The result is the volume fraction.« less

Investigating the Influence of Magmatic Volatile Input and Seawater Entrainment on Vent Deposit Morphology and Composition in Manus Basin (Back-arc) Hydrothermal Systems

NASA Astrophysics Data System (ADS)

Tivey, M.; Bach, W.; Tivey, M.; Seewald, J.; Craddock, P.; Rouxel, O.; Yoerger, D.; Yeats, C.; McConachy, T.; Quigley, M.; Vanko, D.

2006-12-01

In August 2006, hydrothermal activity within the eastern Manus Basin north of Papua New Guinea was investigated using a combination of mapping (SeaBeam from the R/V Melville, near-bottom multi-beam sonar and magnetometer from AUV ABE and ROV Jason-2) and sampling (fluids and solids using ROV Jason-2). Objectives included identifying tectonic/geologic settings, examining interactions of seawater with felsic rocks that constitute the high silica end-member in the range of basement compositions, determining the extent of volatile magmatic inputs into these systems, and examining the evolution of hydrothermal activity through time. At the PACMANUS (Papua New Guinea Australia Canada Manus) area five previously discovered vent fields were mapped and sampled, and a new very active field, Fenway, was located south of the Satanic Mills field. The core of the Fenway field is a 40 m diameter two-tiered mound. A large black smoker complex venting boiling (356C, 172 bar) fluids forms the upper tier, with the lower tier composed of sulfide debris, massive anhydrite-sulfide deposits, and anhydrite sand. At the DESMOS Caldera hyaloclastites and extensive patches of bleached and stained substrate were mapped and sampled, as were diffuse (72C) and focused (119C) acidic fluids with a pH (25C) of 1.0; no sulfide deposits were observed in the area. At the North Su vent field within the SuSu Knolls area even lower pH fluids were sampled (see Seewald et al., this session). Hydrothermal activity includes venting of white sulfur-rich fluids through cracks and sediments, formation of native sulfur flanges, diffuse venting through spires, and black smoker activity (324C). Anhydrite cement is also present. The abundance of massive anhydrite at Fenway and presence of anhydrite cement at North Su is consistent with significant local entrainment and heating of seawater. The extremely low pH (less than 2) of some vent fluids supports previous hypotheses that fluids in this area contain significant input of magmatic volatiles (e.g., Gamo et al. 1997, Geology 25). During the cruise, 104 black, gray, and clear fluids were sampled using gas-tight and major samplers, and 198 vent sulfide deposit, 83 altered substrate, and 43 fresh lava samples were recovered. Geophysical maps and geochemical data for solids and fluids will be used to determine the styles of mixing and reaction occurring beneath the vent fields, estimate subsurface mineral deposition, and investigate the extent to which input of magmatic fluids is occurring within each system.

[Potentially toxic and harmful phytoflagellates from the Mexican Pacific coasts].

PubMed

Bravo-Sierra, Ernesto

2004-09-01

The phytoflagellates are a heterogeneous group of autotrophic, heterotrophic and mixothrophic flagellates of trophic importance in several ecosystems. As in the rest of Latin America, the phytoflagellates that occur in the Mexican Pacific coasts are virtually unknown except for a few records. Their study require complicated collection and analysis methods, a probable cause for the scarce knowledge of this group in tropical and subtropical areas. Material recently collected from various localities along the Mexican Pacific coasts was used to study phytoflagellates, including toxic and potentially toxic species. Plankton samples were treated by gravity and pump filtration, using different methods for fixation and analysis. The phyla Euglenophyta, Heterokontophyta and Haptophyta were found. They occur as plankton in oceanic and shallow coastal waters.

Coastal Online Analysis and Synthesis Tool 2.0 (COAST)

NASA Technical Reports Server (NTRS)

Brown, Richard B.; Navard, Andrew R.; Nguyen, Beth T.

2009-01-01

The Coastal Online Assessment and Synthesis Tool (COAST) 3D geobrowser has been developed to integrate disparate coastal datasets from NASA and other sources into a desktop tool that provides new data visualization and analysis capabilities for coastal researchers, managers, and residents. It is built upon the widely used NASA-developed open source World Wind geobrowser from NASA Ames (Patrick Hogan et al.) .Net and C# version is used for development. It is leveraged off of World Wind community shared code samples and COAST 2.0 enhancement direction is based on Coastal science community feedback and needs assessment (GOMA). The main objective is to empower the user to bring more user-meaningful data into multi-layered, multi-temporal spatial context.

Elastic Dispersion and Attenuation in Fully Saturated Sandstones: Role of Mineral Content, Porosity, and Pressures

NASA Astrophysics Data System (ADS)

Pimienta, Lucas; Borgomano, Jan V. M.; Fortin, Jérôme; Guéguen, Yves

2017-12-01

Because measuring the frequency dependence of elastic properties in the laboratory is a technical challenge, not enough experimental data exist to test the existing theories. We report measurements of three fluid-saturated sandstones over a broad frequency band: Wilkenson, Berea, and Bentheim sandstones. Those sandstones samples, chosen for their variable porosities and mineral content, are saturated by fluids of varying viscosities. The samples elastic response (Young's modulus and Poisson's ratio) and hydraulic response (fluid flow out of the sample) are measured as a function of frequency. Large dispersion and attenuation phenomena are observed over the investigated frequency range. For all samples, the variation at lowest frequency relates to a large fluid flow directly measured out of the rock samples. These are the cause (i.e., fluid flow) and consequence (i.e., dispersion/attenuation) of the transition between drained and undrained regimes. Consistently, the characteristic frequency correlates with permeability for each sandstone. Beyond this frequency, a second variation is observed for all samples, but the rocks behave differently. For Berea sandstone, an onset of dispersion/attenuation is expected from both Young's modulus and Poisson's ratio at highest frequency. For Bentheim and Wilkenson sandstones, however, only Young's modulus shows dispersion/attenuation phenomena. For Wilkenson sandstone, the viscoelastic-like dispersion/attenuation response is interpreted as squirt flow. For Bentheim sandstone, the second effect does not fully follow such response, which could be due to a lower accuracy in the measured attenuation or to the occurence of another physical effect in this rock sample.

Laboratory Evaluation of Remediation Alternatives for U.S. Coast Guard Small Arms Firing Ranges

DTIC Science & Technology

1999-11-01

S) is an immobilization process that involves the mixing of a contaminated soil with a binder material to enhance the physical and chemical...samples were shipped to WES for laboratory analysis. Phase III: Homogenization of the Bulk Samples. Each of the bulk samples was separately mixed to...produce uniform samples for testing. These mixed bulk soil samples were analyzed for metal content. Phase IV: Characterization of the Bulk Soils

Comparison of direct sampling and brochoalveolar lavage for determining active drug concentrations in the pulmonary epithelial lining fluid of calves injected with enrofloxacin or tilmicosin.

PubMed

Foster, D M; Sylvester, H J; Papich, M G

2017-12-01

Antibiotic distribution to interstitial fluid (ISF) and pulmonary epithelial fluid (PELF) was measured and compared to plasma drug concentrations in eight healthy calves. Enrofloxacin (Baytril ® 100) was administered at a dose of 12.5 mg/kg subcutaneously (SC), and tilmicosin (Micotil ® 300) was administered at a dose of 20 mg/kg SC. PELF, sampled by two different methods-bronchoalveolar lavage (BAL) and direct sampling (DS)-plasma, and ISF were collected from each calf and measured for tilmicosin, enrofloxacin and its metabolite ciprofloxacin by HPLC. Pharmacokinetic analysis was performed on the concentrations in each fluid, for each drug. The enrofloxacin/ciprofloxacin concentration as measured by AUC in DS samples was 137 ± 72% higher than in plasma, but in BAL samples, this value was 535 ± 403% (p < .05). The concentrations of tilmicosin in DS and BAL samples exceeded plasma drug concentrations by 567 ± 189% and 776 ± 1138%, respectively. The enrofloxacin/ciprofloxacin concentrations collected by DS were significantly different than those collected by BAL, but the tilmicosin concentrations were not significantly different between the two methods. Concentrations of enrofloxacin/ciprofloxacin exceeded the MIC values for bovine respiratory disease pathogens but tilmicosin did not reach MIC levels for these pathogens in any fluids. © 2017 John Wiley & Sons Ltd.

Search for Fluid Inclusions in a Carbonaceous Chondrite Using a New X-Ray Micro-Tomography Technique Combined with FIB Sampling

NASA Technical Reports Server (NTRS)

Tsuchiyama, A.; Miyake, A.; Zolensky, M. E.; Uesugi, K.; Nakano, T.; Takeuchi, A.; Suzuki, Y.; Yoshida, K.

2014-01-01

Early solar system aqueous fluids are preserved in some H chondrites as aqueous fluid inclusions in halite (e.g., [1]). Although potential fluid inclusions are also expected in carbonaceous chondrites [2], they have not been surely confirmed. In order to search for these fluid inclusions, we have developped a new X-ray micro-tomography technique combined with FIB sampling and applied this techniqu to a carbanaceous chondrite. Experimental: A polished thin section of Sutter's Mill meteorite (CM) was observed with an optical microscope and FE-SEM (JEOL 7001F) for chosing mineral grains of carbonates (mainly calcite) and sulfides (FeS and ZnS) 20-50 microns in typical size, which may have aqueous fluid inclusions. Then, a "house" similar to a cube with a roof (20-30 microns in size) is sampled from the mineral grain by using FIB (FEI Quanta 200 3DS). Then, the house was atached to a thin W-needle by FIB and imaged by a SR-based imaging microtomography system with a Fresnel zone plate at beamline BL47XU, SPring-8, Japan. One sample was imaged at two X-ray energies, 7 and 8 keV, to identify mineral phases (dual-enegy microtomography: [3]). The size of voxel (pixel in 3D) was 50-80 nm, which gave the effective spatial resolution of approx. 200 nm. A terrestrial quartz sample with an aqueous fluid inclusion with a bubble was also examined as a test sample by the same method. Results and discussion: A fluid inclusion of 5-8 microns in quartz was clearly identified in a CT image. A bubble of approx. 4 microns was also identified as refraction contrast although the X-ray absorption difference between fluid and bubble is small. Volumes of the fluid and bubble were obtained from the 3D CT images. Fourteen grains of calcite, two grains of iron sulfide and one grain of (Zn,Fe)S were examined. Ten calcite, one iron sulfide and one (Zn,Fe)S grains have inclusions >1 micron in size (the maximum: approx. 5 microns). The shapes are spherical or irregular. Tiny inclusions (<1 micron) are also present in all the grains examined. These results show that mineral grains have more inclusions than expected from 2D observations. The X-ray absorption of the inclusions shows that they are not solid inclusions. No bubbles were observed inside, indicating that we cannot determine whether they are really aqueous fluids or merely voids. One calcite grain has an inclusion approx. 2 microns in size, which seems to have a bubble and a tiny solid daughter crystal inside (three-phase inclusion). As we know the exact 3D position of the inclusion, we will anlyze the inclusion by SIMS after freezing the sample as has been done for a halite sample [3]. The present technique is useful for finding small inclusions not only in carbonaceous chondrites but also for terrestrial materials.

Peritoneal fluid culture

MedlinePlus

Culture - peritoneal fluid ... sent to the laboratory for Gram stain and culture. The sample is checked to see if bacteria ... The peritoneal fluid culture may be negative, even if you have ... diagnosis of peritonitis is based on other factors, in addition ...

Evidence for CO2-rich fluids in rocks from the type charnockite area near Pallavaram, Tamil Nadu

NASA Technical Reports Server (NTRS)

Hansen, E.; Hunt, W.; Jacob, S. C.; Morden, K.; Reddi, R.; Tacy, P.

1988-01-01

Fluid inclusion and mineral chemistry data was presented for samples from the type charnockite area near Pallavaram (Tamil Nadu, India). The results indicate the presence of a dense CO2 fluid phase, but the data cannot distinguish between influx of this fluid from elsewhere or localized migration of CO2-rich fluids associated with dehydration melting.

Extreme pressure fluid sample transfer pump

DOEpatents

Halverson, Justin E.; Bowman, Wilfred W.

1990-01-01

A transfer pump for samples of fluids at very low or very high pressures comprising a cylinder having a piston sealed with an O-ring, the piston defining forward and back chambers, an inlet and exit port and valve arrangement for the fluid to enter and leave the forward chamber, and a port and valve arrangement in the back chamber for adjusting the pressure across the piston so that the pressure differential across the piston is essentially zero and approximately equal to the pressure of the fluid so that the O-ring seals against leakage of the fluid and the piston can be easily moved, regardless of the pressure of the fluid. The piston may be actuated by a means external to the cylinder with a piston rod extending through a hole in the cylinder sealed with a bellows attached to the piston head and the interior of the back chamber.

Development of a novel method for amniotic fluid stem cell storage.

PubMed

Zavatti, Manuela; Beretti, Francesca; Casciaro, Francesca; Comitini, Giuseppina; Franchi, Fabrizia; Barbieri, Veronica; Bertoni, Laura; De Pol, Anto; La Sala, Giovanni B; Maraldi, Tullia

2017-08-01

Current procedures for collection of human amniotic fluid stem cells (hAFSCs) indicate that cells cultured in a flask for 2 weeks can then be used for research. However, hAFSCs can be retrieved directly from a small amount of amniotic fluid that can be obtained at the time of diagnostic amniocentesis. The aim of this study was to determine whether direct freezing of amniotic fluid cells is able to maintain or improve the potential of a sub-population of stem cells. We compared the potential of the hAFSCs regarding timing of freezing, cells obtained directly from amniotic fluid aspiration (D samples) and cells cultured in a flask before freezing (C samples). Colony-forming-unit ability, proliferation, morphology, stemness-related marker expression, senescence, apoptosis and differentiation potential of C and D samples were compared. hAFSCs isolated from D samples expressed mesenchymal stem cells markers until later passages, had a good proliferation rate and exhibited differentiation capacity similar to hAFSCs of C samples. Interestingly, direct freezing induced a higher concentration of cells positive for pluripotency stem cell markers, without teratoma formation in vivo. This study suggests that minimal processing may be adequate for the banking of amniotic fluid cells, avoiding in vitro passages before the storage and exposure to high oxygen concentration, which affect stem cell properties. This technique might be a cost-effective and reasonable approach to the process of Good Manufacturing Process accreditation for stem-cell banks. Copyright © 2017 International Society for Cellular Therapy. Published by Elsevier Inc. All rights reserved.

Stationary microfluidics: molecular diagnostic assays by moving magnetic beads through non-moving liquids

NASA Astrophysics Data System (ADS)

Becker, Holger; Carstens, Cornelia; Kuhlmeier, Dirk; Sandetskaya, Natalia; Schröter, Nicole; Zilch, Christian; Gärtner, Claudia

2013-03-01

Commonly, microfluidic devices are based on the movement of fluids. For molecular diagnostics assays which often include steps like PCR, this practically always involves a more or less complicated set of external pumps, valves and liquid controls. In the presented paper, we follow a different approach in which the fluid after sample introduction remains stationary and the main bioactive sample molecules are moved through a chain of reaction compartments which contain the different reagents necessary for the assay. The big advantage of this concept is the lack of any external fluid actuation/control. Results on sample carry-over experiments and complete assays will be given.

Solubility of 238U radionuclide from various types of soil in synthetic gastrointestinal fluids using "US in vitro" digestion method

NASA Astrophysics Data System (ADS)

Rashid, Nur Shahidah Abdul; Sarmani, Sukiman; Majid, Amran Ab.; Mohamed, Faizal; Siong, Khoo Kok

2015-04-01

238U radionuclide is a naturally occuring radioactive material that can be found in soil. In this study, the solubility of 238U radionuclide obtained from various types of soil in synthetic gastrointestinal fluids was analysed by "US P in vitro" digestion method. The synthetic gastrointestinal fluids were added to the samples with well-ordered, mixed throughly and incubated according to the human physiology digestive system. The concentration of 238U radionuclide in the solutions extracted from the soil was measured using Induced Coupling Plasma Mass Spectrometer (ICP-MS). The concentration of 238U radionuclide from the soil samples in synthetic gastrointestinal fluids showed different values due to different homogenity of soil types and chemical reaction of 238U radionuclide. In general, the solubility of 238U radionuclide in gastric fluid was higher (0.050 - 0.209 ppm) than gastrointestinal fluids (0.024 - 0.050 ppm). It could be concluded that the US P in vitro digestion method is practicle for estimating the solubility of 238U radionuclide from soil materials and could be useful for monitoring and risk assessment purposes applying to environmental, health and contaminated soil samples.

Reciprocal Effects between Fluid and Crystallized Intelligence and Their Dependence on Parents' Socioeconomic Status and Education

ERIC Educational Resources Information Center

Rindermann, Heiner; Flores-Mendoza, Carmen; Mansur-Alves, Marcela

2010-01-01

The investment theory of Cattell supposes an influence of fluid on crystallized intelligence. The development of fluid intelligence largely depends on biological factors, of crystallized intelligence on fluid intelligence and environmental stimulation. To test this theory two contrasting samples representing a broad ability range were chosen, a…

21 CFR 880.6740 - Vacuum-powered body fluid suction apparatus.

Code of Federal Regulations, 2011 CFR

2011-04-01

... 21 Food and Drugs 8 2011-04-01 2011-04-01 false Vacuum-powered body fluid suction apparatus. 880... Personal Use Miscellaneous Devices § 880.6740 Vacuum-powered body fluid suction apparatus. (a) Identification. A vacuum-powered body fluid suction apparatus is a device used to aspirate, remove, or sample...

21 CFR 880.6740 - Vacuum-powered body fluid suction apparatus.

Code of Federal Regulations, 2010 CFR

2010-04-01

... 21 Food and Drugs 8 2010-04-01 2010-04-01 false Vacuum-powered body fluid suction apparatus. 880... Personal Use Miscellaneous Devices § 880.6740 Vacuum-powered body fluid suction apparatus. (a) Identification. A vacuum-powered body fluid suction apparatus is a device used to aspirate, remove, or sample...

Effect of synovial fluid, phosphate-buffered saline solution, and water on the dissolution and corrosion properties of CoCrMo alloys as used in orthopedic implants.

PubMed

Lewis, A C; Kilburn, M R; Papageorgiou, I; Allen, G C; Case, C P

2005-06-15

The corrosion and dissolution of high- and low-carbon CoCrMo alloys, as used in orthopedic joint replacements, were studied by immersing samples in phosphate-buffered saline (PBS), water, and synovial fluid at 37 degrees C for up to 35 days. Bulk properties were analyzed with a fine ion beam microscope. Surface analyses by X-ray photoelectron spectroscopy and Auger electron spectroscopy showed surprisingly that synovial fluid produced a thin oxide/hydroxide layer. Release of ions into solution from the alloy also followed an unexpected pattern where synovial fluid, of all the samples, had the highest Cr concentration but the lowest Co concentration. The presence of carbide inclusions in the alloy did not affect the corrosion or the dissolution mechanisms, although the carbides were a significant feature on the metal surface. Only one mechanism was recognized as controlling the thickness of the oxide/hydroxide interface. The analysis of the dissolved metal showed two mechanisms at work: (1) a protein film caused ligand-induced dissolution, increasing the Cr concentration in synovial fluid, and was explained by the equilibrium constants; (2) corrosion at the interface increased the Co in PBS. The effect of prepassivating the samples (ASTM F-86-01) did not always have the desired effect of reducing dissolution. The release of Cr into PBS increased after prepassivation. The metal-synovial fluid interface did not contain calcium phosphate as a deposit, typically found where samples are exposed to calcium rich bodily fluids. (c) 2005 Wiley Periodicals, Inc.

MEASUREMENT OF PYRETHROID RESIDUES IN ENVIRONMENTAL AND FOOD SAMPLES BY ENHANCED SOLVENT EXTRACTION/SUPERCRITICAL FLUID EXTRACTION COUPLED WITH GAS CHROMATOGRAPHY-TANDEM MASS SPECTROMETRY

EPA Science Inventory

The abstract summarizes pyrethorid methods development research. It provides a summary of sample preparation and analytical techniques such as supercritical fluid extraction, enhance solvent extraction, gas chromatography and tandem mass spectrometry.

Evaluation of passive oxide layer formation-biocompatibility relationship in NiTi shape memory alloys: geometry and body location dependency.

PubMed

Toker, S M; Canadinc, D; Maier, H J; Birer, O

2014-03-01

A systematic set of ex-situ experiments were carried out on Nickel-Titanium (NiTi) shape memory alloy (SMA) in order to identify the dependence of its biocompatibility on sample geometry and body location. NiTi samples with three different geometries were immersed into three different fluids simulating different body parts. The changes observed in alloy surface and chemical content of fluids upon immersion experiments designed for four different time periods were analyzed in terms of ion release, oxide layer formation, and chemical composition of the surface layer. The results indicate that both sample geometry and immersion fluid significantly affect the alloy biocompatibility, as evidenced by the passive oxide layer formation on the alloy surface and ion release from the samples. Upon a 30 day immersion period, all three types of NiTi samples exhibited lower ion release than the critical value for clinic applications. However; a significant amount of ion release was detected in the case of gastric fluid, warranting a thorough investigation prior to utility of NiTi in gastrointestinal treatments involving long-time contact with tissue. Furthermore, certain geometries appear to be safer than the others for each fluid, providing a new set of guidelines to follow while designing implants making use of NiTi SMAs to be employed in treatments targeting specific body parts. Copyright © 2013 Elsevier B.V. All rights reserved.

Photographic Identification of Humpback and Blue Whales off the US West Coast: Results and Updated Abundance Estimates from 2008 Field Season

DTIC Science & Technology

2009-12-01

1990s and only being present part of the time off the US West Coast lowering the average density present (but not reflecting an actual population ...the average density present (but not reflecting an actual population decline). 15. SUBJECT TERMS 16. SECURITY CLASSIFICATION OF: 17. LIMITATION OF...due to our sample representing a decreasing proportion of this growing population leading to greater variation and possibly greater susceptibility to

A Synoptic Climatology of the Elevated Mixed Layer Inversion Over the Southern Great Plains in Spring

DTIC Science & Technology

1991-08-01

offshore PBL flow along Texas coast at initial time (1200 UTC 4 April). Tick marks along the trajectory are used to denote the simulation hour; the...are taken at tornado Gulf Coast event time at closest upper- air station in an upstream direction with respect to mean low-level flow ). All rain... system starts (subdivided by time of day). A sample day was also discussed. 9 break and thermal inversion layer appears. Above the inversion layer

[Pre-analytical quality in fluid samples cytopathology: Results of a survey from the French Society of Clinical Cytology].

PubMed

Courtade-Saïdi, Monique; Fleury Feith, Jocelyne

2015-10-01

The pre-analytical step includes sample collection, preparation, transportation and storage in the pathology unit where the diagnosis is performed. The pathologist ensures that pre-analytical conditions are in line with expectations. The lack of standardization for handling cytological samples makes this pre-analytical step difficult to harmonize. Moreover, this step depends on the nature of the sample: fresh liquid or fixed material, air-dried smears, liquid-based cytology. The aim of the study was to review the different practices in French structures of pathology on the pre-analytical phase concerning cytological fluids such as broncho-alveolar lavage (BALF), serous fluids and urine. A survey was conducted on the basis of the pre-analytical chapter of the ISO 15189 and sent to 191 French pathological structures (105 public and 86 private). Fifty-six laboratories replied to the survey. Ninety-five per cent have a computerized management system and 70% a manual on sample handling. The general instructions requested for the patients and sample identification were highly correctly filled with a short time routing and additional tests prescription. By contrast, information are variable concerning the clinical information requested and the type of tubes for collecting fluids and the volumes required as well as the actions taken in case of non-conformity. For the specific items concerning BALF, serous fluids and urine, this survey has shown a great heterogeneity according to sample collection, fixation and of clinical information. This survey demonstrates that the pre-analytical quality for BALF, serous fluids and urine is not optimal and that some corrections of the practices are recommended with a standardization of numerous steps in order to increase the reproducibility of additional tests such as immunocytochemistry, cytogenetic and molecular biology. Some recommendations have been written. Copyright © 2015 Elsevier Masson SAS. All rights reserved.

Detection and molecular characterization of Vibrio parahaemolyticus isolated from seafood harvested along the southwest coast of India.

PubMed

Raghunath, Pendru; Acharya, Sadananda; Bhanumathi, Amarbahadur; Karunasagar, Iddya; Karunasagar, Indrani

2008-09-01

The levels of total and tdh(+)Vibrio parahaemolyticus were estimated in 83 seafood samples from southwest coast of India by colony hybridization. Conventional enrichment and isolation technique was also used to study the prevalence. Polymerase chain reaction (PCR) was performed on bacterial cell lyates for detection of total and pathogenic V. parahaemolyticus by amplification of specific genes. Of 83 samples tested, V. parahaemolyticus could be detected in 74 (89.2%) samples and tdh(+)V. parahaemolyticus in 5 (6.0%) samples by colony hybridization. V. parahaemolyticus was detected in 68 (81.9%) of 83 samples after 18 h of enrichment by PCR, and isolated from 63 (75.9%) of 83 samples by conventional isolation. The virulence genes tdh and trh could be detected in 8.4% and 25.3%, respectively, in the sample enrichment broths by PCR. Use of colony hybridization following enrichment to achieve sensitive detection of tdh(+)V. parahaemolyticus in seafood was evaluated using another set of 58 seafood samples. Thirty pathogenic V. parahaemolyticus strains isolated during the study were screened by PCR for genetic markers to be specific for the detection of the pandemic clone. Results of this study suggest that the GS-PCR may serve as a reliable genetic marker for the pandemic clone of V. parahaemolyticus.

Physical deterioration of preservative treated poles and pilings exposed to salt water

Treesearch

Grant T. Kirker; Jessie Glaeser; Stan T. Lebow; Frederick Green III; Carol A. Clausen

2011-01-01

This report details the results of laboratory analyses of wooden pilings sent to the USDA Forest Products Laboratory in March 2011. These samples were removed from coastal wooden posts, poles, piles, and deck boards. A total of 22 samples, consisting of either core borings or surface fiber samples, were removed from four installations along the South Carolina coast....

Fluorescence characteristics of chromophoric dissolved organic matter in shallow water along the Zhejiang coasts, southeast China.

PubMed

Gao, Lei; Fan, Daidu; Li, Daoji; Cai, Jingong

2010-04-01

Twenty-eight surface water samples from rivers, muddy intertidal flats, sand shores, and bedrock coasts were collected along the Zhejiang coastline in southeast China. In addition, three samples from the Changjiang (Yangtze River) were collected for comparison. CDOM (chromophoric dissolved organic matter) absorption and fluorescence excitation-emission matrix (EEM) spectroscopy, as well as nutrients and DOC were measured in these samples. According to salinity, nutrient, and DOC constituents, the 28 Zhejiang samples were categorized into four groups, i.e. highly-polluted, river derived, muddy-flat derived, and saltwater dominated ones. Among the six parameters (two humic-like and two protein-like peak intensities in fluorescence EEM contours, absorption at 300 nm, and DOC concentration) for the Zhejiang samples, any two of them were positively correlated. The submarine groundwater discharge, rather than local rivers, might have provided most of the freshwater that interacted with the saltwater during the mixing process. The high protein-like EEM peaks in samples from muddy salt marshes and rivers were probably caused by terrestrial inputs, land-based pollution, and local biological activities in combination. Copyright 2009. Published by Elsevier Ltd.

Geochemical And Hydrodynamic Behavior Of The Karstic Aquifer System In The Portion Between Akumal And Boca Paila, In The South Eastern Coast Of The Yucatan Peninsula.

NASA Astrophysics Data System (ADS)

Velazquez Oliman, G.; Leal Bautista, R. M.; Perry, E. C.; Carrol, M.; Wagner, N.; Castillo Oliman, P.

2008-12-01

We report here aspects of the geochemistry and hydrodynamics of a nearly 450 km2 area that constitutes part of the rapidly developing tourist corridor between Akumal and Boca Paila, Quintana Roo, Mexico. Some of the largest explored submerged cave systems in the world, including Nohoch Nah Chic and Dos Ojos, are within the study area. The presence of these and other highly permeable conduits highlights the importance of a better understanding of the aquifer system both to assess its vulnerability and to facilitate sustainable water management. This study focuses on major ion, trace element, and stable isotope geochemistry of groundwater and on monitoring system hydrodynamics through water levels measurements. Sampling along approximately 30 km of coast was accomplished by means of a network of 29 sampling sites arranged along three NW-SE transverse lines running approximately perpendicular to the coast and each extending about 16 km inland. To date 52 samples have been taken. In addition, vertical specific conductivity profiles have helped delineate the thickness of the freshwater lens, which has a maximum thickness of 33.5 m in the southwestern part of the study area, approximately 13.5 km from the coast. In the northeastern corner of the study area, 7.5 m of brackish water overlies sea water near the coast. Water level monitoring is by means of Schlumberger pressure transducers installed at 11 sites. Water table changes record tidal oscillation, confirming the interconnectedness of the system, an observation supported by conductivity measurements that indicate oscillatory vertical movement of the saline interface. (SO4/Cl) ratios, expressed as 1000(SO4/Cl) in meq/kg, are useful tracers of groundwater provenance. The ratio is approximately 100 for seawater and is much greater for groundwater in southern Quintana Roo that has dissolved evaporite (Perry et al, 2002). Ratios in the study area, which are 100 or less, indicate no contact with evaporite. Background oxygen and hydrogen isotope data are being collected from groundwater and local precipitation for future use in tracing movement of tropical storm recharge through the aquifer system (Pedersen et al, 2005).

The composition of fluid inclusions in ore and gangue minerals from the Silesian-Cracow Mississippi Valley-type Zn-Pb deposits Poland: Genetic and environmental implications

USGS Publications Warehouse

Viets, J.G.; Hofstra, A.H.; Emsbo, P.; Kozlowski, A.

1996-01-01

The composition of fluids extracted from ore and gangue sulfide minerals that span most of the paragenesis of the Silesian-Cracow district was determined using a newly developed ion chromatographic (IC) technique. Ionic species determined were Na+, NH+4, Ca2+, Mg2+, K+, Rb+, Sr2+, Ba2+, Cl-, Br-, F-, I-, PO3-4, CO2-3, HS-, S2O2-3, SO2-4, NO-3, and acetate. Mineral samples included six from the Pomorzany mine and one from the Trzebionka mine which are hosted in the Triassic Muschelkalk Formation, and two samples of drill core from mineralized Upper Devonian strata. Nine paragenetically identifiable sulfide minerals occur throughout the Silesian-Cracow district. These include from earliest to latest: early iron sulfides, granular sphalerite, early galena, light-banded sphalerite, galena, dark-banded sphalerite, iron sulfides, late dark-banded sphalerite with late galena, and late iron sulfides. Seven of the minerals were sampled for fluid inclusion analysis in this study. Only the early iron sulfides and the last galena stage were not sampled. Although the number of analyses are limited to nine samples and two replicates and there is uncertainty about the characteristics of the fluid inclusions analyzed, the data show clear temporal trends in the composition of the fluids that deposited these minerals. Fluid inclusions in minerals deposited later in the paragenesis have significantly more K+, Br-, NH+4, and acetate but less Sr2+ than those deposited earlier in the paragenesis. The later minerals are also characterized by isotopically lighter sulfur and significantly more Tl and As in the solid minerals. The change in ore-fluid chemistry is interpreted to reflect a major change in the hydrologic regime of the district. Apparently, the migrational paths of ore fluids from the Upper Silesian basin changed during ore deposition and the fluids which deposited early minerals reacted with aquifers with very different geochemical characteristics than those that deposited late minerals. The early fluids may have reacted primarily with Devonian and Lower Carboniferous carbonate aquifers deeper in the basin, whereas the later fluids appear to have had extensive contact with organic-rich rocks, probably the shallower Middle and Upper Carboniferous flysch associated with coal measures. High concentrations of toxic Tl and As occur in the readily oxidized marcasite and pyrite minerals deposited by the later fluids. In general, the geochemistry of both the early and late fluids may be explained by an evaporite related origin or by water-rock modification of a saline basinal brine. When compared to the composition of fluid inclusions in Mississippi Valley-type (MVT) ore minerals from the Ozark region of the United States, fluid inclusions in minerals from Silesian-Cracow are fundamentally different, containing more Ca2+, Mg2+, NH+4, Br-, Sr2+ and acetate in all mineral stages with significantly more K+ in later stage minerals. The differences in ore fluid chemistry between the two regions are consistent with the lithologic differences of the respective basins thought to be the source of the mineralizing brines.

Microplastic concentrations in beach sediments along the German Baltic coast.

PubMed

Stolte, Andrea; Forster, Stefan; Gerdts, Gunnar; Schubert, Hendrik

2015-10-15

The contamination with microplastic particles and fibres was evaluated on beaches along the German Baltic coast. Sediments were sampled near the Warnow and Oder/Peene estuaries, on Rügen island and along the Rostock coast to derive possible entry pathways. Seasonal variations were monitored along the Rostock coast from March to July 2014. After density separation in saline solution, floating particles were found to be dominated by sand grains. Water surface tension is shown to be sufficient to explain floatation of grains with sizes less than 1.5mm. Selecting intensely coloured particles and fibres, we find lower limits of the microplastic concentrations of 0-7 particles/kg and 2-11 fibres/kg dry sediment. The largest microplastic contaminations are measured at the Peene outlet into the Baltic Sea and in the North Sea Jade Bay. City discharges, industrial production sites, fishing activity and tourism are the most likely sources for the highest microplastic concentrations. Copyright © 2015 Elsevier Ltd. All rights reserved.

Geographic structure evidenced in the toxic dinoflagellate Alexandrium pacificum Litaker (A. catenella - group IV (Whedon & Kofoid) Balech) along Japanese and Chinese coastal waters.

PubMed

Genovesi, Benjamin; Berrebi, Patrick; Nagai, Satoshi; Reynaud, Nathalie; Wang, Jinhui; Masseret, Estelle

2015-09-15

The intra-specific diversity and genetic structure within the Alexandrium pacificum Litaker (A. catenella - Group IV) populations along the Temperate Asian coasts, were studied among individuals isolated from Japan to China. The UPGMA dendrogram and FCA revealed the existence of 3 clusters. Assignment analysis suggested the occurrence of gene flows between the Japanese Pacific coast (cluster-1) and the Chinese Zhejiang coast (cluster-2). Human transportations are suspected to explain the lack of genetic difference between several pairs of distant Japanese samples, hardly explained by a natural dispersal mechanism. The genetic isolation of the population established in the Sea of Japan (cluster-3) suggested the existence of a strong ecological and geographical barrier. Along the Pacific coasts, the South-North current allows limited exchanges between Chinese and Japanese populations. The relationships between Temperate Asian and Mediterranean individuals suggested different scenario of large-scale dispersal mechanisms. Copyright © 2015. Published by Elsevier Ltd.

Demystifying the Capitella capitata complex (Annelida, Capitellidae) diversity by morphological and molecular data along the Brazilian coast

PubMed Central

Di Domenico, Maikon; Amaral, Antonia C. Z.; Paiva, Paulo C.

2017-01-01

The sibling species of Capitella capitata are globally known for their tolerance to disturbed habitats and the C. capitata complex is often used as an ecological indicator. A recent re-description proposed that C. capitata, originally described in Greenland is restricted to the Artic and Subarctic regions. Given their ecological relevance, we conducted a morphological and molecular analyses based on mtDNA sequences to investigate the diversity and distribution of the C. capitata complex along the Brazilian coast. Our morphological and molecular data were congruent and revealed the existence of four new species distinct from C. capitata, collected from the type locality. This study is the first characterization of the biodiversity and distribution of Capitella species made along the Brazilian coast and yielded a set of morphological characters corroborated by the mtDNA sequences for species identification. Our results increase the biodiversity of the genus along the Brazilian coast by describing four new species (Capitella aracaensis sp. n., Capitella biota sp. n., Capitella neoaciculata sp. n. and Capitella nonatoi sp. n.). One species was collected from only one sampling site, while the others are distributed along the coast. PMID:28562616

A MORE COST-EFFECTIVE EMAP BENTHIC MACROFAUNAL SAMPLING PROTOCOL

EPA Science Inventory

Benthic macrofaunal sampling protocols in the U.S. Environmental Protection Agency's Environmental Monitoring and Assessment Program (EMAP) are to collect 30 to 50 random benthic macrofauna [defined as animals retained on a 0.5 mm (East and Gulf Coasts, USA) or a 1.0 mm mesh siev...

46 CFR 153.935 - Opening of tanks and cargo sampling.

Code of Federal Regulations, 2010 CFR

2010-10-01

... 46 Shipping 5 2010-10-01 2010-10-01 false Opening of tanks and cargo sampling. 153.935 Section 153.935 Shipping COAST GUARD, DEPARTMENT OF HOMELAND SECURITY (CONTINUED) CERTAIN BULK DANGEROUS CARGOES SHIPS CARRYING BULK LIQUID, LIQUEFIED GAS, OR COMPRESSED GAS HAZARDOUS MATERIALS Operations General...

46 CFR 153.935 - Opening of tanks and cargo sampling.

Code of Federal Regulations, 2013 CFR

2013-10-01

... 46 Shipping 5 2013-10-01 2013-10-01 false Opening of tanks and cargo sampling. 153.935 Section 153.935 Shipping COAST GUARD, DEPARTMENT OF HOMELAND SECURITY (CONTINUED) CERTAIN BULK DANGEROUS CARGOES SHIPS CARRYING BULK LIQUID, LIQUEFIED GAS, OR COMPRESSED GAS HAZARDOUS MATERIALS Operations General...

46 CFR 153.935 - Opening of tanks and cargo sampling.

Code of Federal Regulations, 2011 CFR

2011-10-01

... 46 Shipping 5 2011-10-01 2011-10-01 false Opening of tanks and cargo sampling. 153.935 Section 153.935 Shipping COAST GUARD, DEPARTMENT OF HOMELAND SECURITY (CONTINUED) CERTAIN BULK DANGEROUS CARGOES SHIPS CARRYING BULK LIQUID, LIQUEFIED GAS, OR COMPRESSED GAS HAZARDOUS MATERIALS Operations General...

46 CFR 153.935 - Opening of tanks and cargo sampling.

Code of Federal Regulations, 2014 CFR

2014-10-01

... 46 Shipping 5 2014-10-01 2014-10-01 false Opening of tanks and cargo sampling. 153.935 Section 153.935 Shipping COAST GUARD, DEPARTMENT OF HOMELAND SECURITY (CONTINUED) CERTAIN BULK DANGEROUS CARGOES SHIPS CARRYING BULK LIQUID, LIQUEFIED GAS, OR COMPRESSED GAS HAZARDOUS MATERIALS Operations General...

46 CFR 153.935 - Opening of tanks and cargo sampling.

Code of Federal Regulations, 2012 CFR

2012-10-01

... 46 Shipping 5 2012-10-01 2012-10-01 false Opening of tanks and cargo sampling. 153.935 Section 153.935 Shipping COAST GUARD, DEPARTMENT OF HOMELAND SECURITY (CONTINUED) CERTAIN BULK DANGEROUS CARGOES SHIPS CARRYING BULK LIQUID, LIQUEFIED GAS, OR COMPRESSED GAS HAZARDOUS MATERIALS Operations General...

How Expert Special Educators Effectively Negotiate Their Job Demands

ERIC Educational Resources Information Center

Ortogero, Shawna P.; Black, Rhonda S.; Cook, Bryan G.

2017-01-01

This qualitative case study explored how three expert secondary special education teachers in Hawaii successfully negotiated their job demands. Purposeful sampling was used to select one secondary school on the Leeward coast of Oahu. We used reputational-case sampling to select participants that fit Dreyfus and Dreyfus' (1980) expert theoretical…

Method for nucleic acid isolation using supercritical fluids

DOEpatents

Nivens, David E.; Applegate, Bruce M.

1999-01-01

A method for detecting the presence of a microorganism in an environmental sample involves contacting the sample with a supercritical fluid to isolate nucleic acid from the microorganism, then detecting the presence of a particular sequence within the isolated nucleic acid. The nucleic acid may optionally be subjected to further purification.

Stability of Gas Hydrates on Continental Margins: Implications of Subsurface Fluid Flow

NASA Astrophysics Data System (ADS)

Nunn, J. A.

2008-12-01

Gas hydrates are found at or just below the sediment-ocean interface in continental margins settings throughout the world. They are also found on land in high latitude regions such as the north slope of Alaska. While gas hydrate occurrence is common, gas hydrates are stable under a fairly restricted range of temperatures and pressures. In a purely conductive thermal regime, near surface temperatures depend on basal heat flow, thermal conductivity of sediments, and temperature at the sediment-water or sediment-air interface. Thermal conductivity depends on porosity and sediment composition. Gas hydrates are most stable in areas of low heat flow and high thermal conductivity which produce low temperature gradients. Older margins with thin continental crust and coarse grained sediments would tend to be colder. Another potentially important control on subsurface temperatures is advective heat transport by recharge/discharge of groundwater. Upward fluid flow depresses temperature gradients over a purely conductive regime with the same heat flow which would make gas hydrates more stable. Downward fluid flow would have the opposite effect. However, regional scale fluid flow may substantially increase heat flow in discharge areas which would destabilize gas hydrates. For example, discharge of topographically driven groundwater along the coast in the Central North Slope of Alaska has increased surface heat flow in some areas by more than 50% over a purely conductive thermal regime. Fluid flow also alters the pressure regime which can affect gas hydrate stability. Modeling results suggest a positive feedback between gas hydrate formation/disassociation and fluid flow. Disassociation of gas hydrates or permafrost due to global warming could increase permeability. This could enhance fluid flow and associated heat transport causing a more rapid and/or more spatially extensive gas hydrate disassociation than predicted solely from conductive propagation of temporal changes in surface or water bottom temperature. Model results from both the North Slope of Alaska and the Gulf of Mexico are compared.

Solid-Phase Extraction Strategies to Surmount Body Fluid Sample Complexity in High-Throughput Mass Spectrometry-Based Proteomics

PubMed Central

Bladergroen, Marco R.; van der Burgt, Yuri E. M.

2015-01-01

For large-scale and standardized applications in mass spectrometry- (MS-) based proteomics automation of each step is essential. Here we present high-throughput sample preparation solutions for balancing the speed of current MS-acquisitions and the time needed for analytical workup of body fluids. The discussed workflows reduce body fluid sample complexity and apply for both bottom-up proteomics experiments and top-down protein characterization approaches. Various sample preparation methods that involve solid-phase extraction (SPE) including affinity enrichment strategies have been automated. Obtained peptide and protein fractions can be mass analyzed by direct infusion into an electrospray ionization (ESI) source or by means of matrix-assisted laser desorption ionization (MALDI) without further need of time-consuming liquid chromatography (LC) separations. PMID:25692071

Assessment of Mycotoxin Exposure in Côte d'ivoire (Ivory Coast) Through Multi-Biomarker Analysis and Possible Correlation with Food Consumption Patterns.

PubMed

Kouadio, James Halbin; Lattanzio, Veronica M T; Ouattara, Djeneba; Kouakou, Brou; Visconti, Angelo

2014-01-01

The aim of the presented study was to investigate the mycotoxin exposure of Ivorian population related to the consumption patterns of maize, peanuts, millet, and cassava product (attiéké). Maize flour samples (n = 51) were purchased from all Abidjan local markets, in the south of Ivory Coast, and urine (n = 99) was collected during the same reference period (July-September 2011) from volunteers living in Abidjan and Daloa cities. Reversed-phase liquid chromatography coupled with electrospray ionization triple quadrupole mass spectrometry (LC-ESI-MS/MS) was used to analyze aflatoxins (AFB1, AFB2, AFG1, and AFG2), ochratoxin A (OTA), fumonisins (FB1, FB2), deoxynivalenol (DON), zearalenone (ZEA), and T-2 and HT-2 toxins in maize flour samples, and their relevant biomarkers (AFM1, DON, DON + de-epoxydeoxynivalenol (DOM-1), FB1, α-zearalenol (ZOL), β-ZOL, and OTA) in urine samples. Critical maize contamination was observed by AFs occurrence (total AFs 4.5 - 330.0 μg/kg) while OTA was found in 13% of samples analyzed. AFM1 was detected in 40% of urines samples (0.06 - 14.11 ng/ml), OTA in 37% (0.01 - 0.42 ng/ml), FB1 in 27% (0.07 to 15.31 ng/ml) and, DON was found in 21% of samples at levels up to 10.0 ng/ml. The correlation coefficients (R(2)) obtained by plotting the percentage of biomarker occurrence (positive samples) versus the frequency of food consumption revealed maize, peanuts, millet and attiéké were strongly linked to AFB1 and OTA exposure with values of R(2) ranged from 0.462 to 0.956. The present study provided data on mycotoxin risk in Ivory Coast, revealing a frequent co-exposure to the major mycotoxins such as AFs, OTA, and fumonisins, which appeared to be related to the frequency of peanuts, maize, millet and attiéké consumption.

Data-driven sensor placement from coherent fluid structures

NASA Astrophysics Data System (ADS)

Manohar, Krithika; Kaiser, Eurika; Brunton, Bingni W.; Kutz, J. Nathan; Brunton, Steven L.

2017-11-01

Optimal sensor placement is a central challenge in the prediction, estimation and control of fluid flows. We reinterpret sensor placement as optimizing discrete samples of coherent fluid structures for full state reconstruction. This permits a drastic reduction in the number of sensors required for faithful reconstruction, since complex fluid interactions can often be described by a small number of coherent structures. Our work optimizes point sensors using the pivoted matrix QR factorization to sample coherent structures directly computed from flow data. We apply this sampling technique in conjunction with various data-driven modal identification methods, including the proper orthogonal decomposition (POD) and dynamic mode decomposition (DMD). In contrast to POD-based sensors, DMD demonstrably enables the optimization of sensors for prediction in systems exhibiting multiple scales of dynamics. Finally, reconstruction accuracy from pivot sensors is shown to be competitive with sensors obtained using traditional computationally prohibitive optimization methods.

Rheological and Magnetorheological Behaviour of Some Magnetic Fluids on Polar and Nonpolar Carrier Liquids

NASA Astrophysics Data System (ADS)

Bălău, Oana; Bica, Doina; Koneracka, Martina; Kopčansky, Peter; Susan-Resiga, Daniela; Vékás, Ladislau

Rheological and magnetorheological behaviour of monolayer and double layer sterically stabilized magnetic fluids, with transformer oil (UTR), diloctilsebacate (DOS), heptanol (Hept), pentanol (Pent) and water (W) as carrier liquids, were investigated. The data for volumic concentration dependence of dynamic viscosity of high colloidal stability UTR, DOS, Hept and Pent samples are particularly well fitted by the formulas given by Vand (1948) and Chow (1994). The Chow type dependence proved its universal character as the viscosity data for dilution series of various magnetic fluids are well fitted by the same curve, regardless the nonpolar or polar charcater of the sample. The magnetorheological effect measured for low and medium concentration water based magnetic fluids is much higher, due to agglomerate formation process, than the corresponding values obtained for the well stabilized UTR, DOS, Hept and Pent samples, even at very high volumic fraction of magnetic nanoparticles.

Optimized exploration resource evaluation using the MDT tool

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zainun, K.; Trice, M.L.

1995-10-01

This paper discusses exploration cost reduction and improved resource delineation benefits that were realized by use of the MDT (Modular Formation Dynamic Tester) tool to evaluate exploration prospects in the Malay Basin of the South China Sea. Frequently, open hole logs do not clearly define fluid content due to low salinity of the connate water and the effect of shale laminae or bioturbation in the silty, shaley sandstones. Therefore, extensive pressure measurements and fluid sampling are required to define fluid type and contacts. This paper briefly describes the features of the MDT tool which were utilized to reduce rig timemore » usage while providing more representative fluid samples and illustrates usage of these features with field examples. The tool has been used on several exploration wells and a comparison of MDT pressures and samples to results obtained with earlier vintage tools and production tests is also discussed.« less

Automated fluid analysis apparatus and techniques

DOEpatents

Szecsody, James E.

2004-03-16

An automated device that couples a pair of differently sized sample loops with a syringe pump and a source of degassed water. A fluid sample is mounted at an inlet port and delivered to the sample loops. A selected sample from the sample loops is diluted in the syringe pump with the degassed water and fed to a flow through detector for analysis. The sample inlet is also directly connected to the syringe pump to selectively perform analysis without dilution. The device is airtight and used to detect oxygen-sensitive species, such as dithionite in groundwater following a remedial injection to treat soil contamination.

Fluid inclusion chemistry of adularia-sericite epithermal Au-Ag deposits of the southern Hauraki Goldfield, New Zealand

USGS Publications Warehouse

Simpson, Mark P.; Strmic Palinkas, Sabina; Mauk, Jeffrey L.; Bodnar, Robert J.

2015-01-01

LA-ICP-MS analyses show that in some cases different fluid inclusion assemblages (FIAs) within a single sample trapped fluids with variable chemistries. These differences likely reflect modification of a single parent fluid through mineral dissolution and precipitation, water/rock interactions, boiling and vapor loss, conductive cooling, and mixing.

Analysis of Supercritical-Extracted Chelated Metal Ions From Mixed Organic-Inorganic Samples

NASA Technical Reports Server (NTRS)

Sinha, Mahadeva P. (Inventor)

1996-01-01

Organic and inorganic contaminants of an environmental sample are analyzed by the same GC-MS instrument by adding an oxidizing agent to the sample to oxidize metal or metal compounds to form metal ions. The metal ions are converted to chelate complexes and the chelate complexes are extracted into a supercritical fluid such as CO2. The metal chelate extract after flowing through a restrictor tube is directly injected into the ionization chamber of a mass spectrometer, preferably containing a refractory metal filament such as rhenium to fragment the complex to release metal ions which are detected. This provides a fast, economical method for the analysis of metal contaminants in a sample and can be automated. An organic extract of the sample in conventional or supercritical fluid solvents can be detected in the same mass spectrometer, preferably after separation in a supercritical fluid chromatograph.

Coast Guard Assists with Mapping of Great Lakes Ice

NASA Image and Video Library

1976-11-21

A group of Coast Guard seamen leave their ship to verify ice formations on the Great Lakes as part of an joint effort with the National Aeronautics and Space Administration (NASA) Lewis Research Center and the National Oceanic and Atmospheric Administration. The regular winter freezing of large portions of the Great Lakes stalled the shipping industry. Lewis began working on two complementary systems to monitor the ice. The Side Looking Airborne Radar (SLAR) system used microwaves to measure the ice distribution and electromagnetic systems used noise modulation to determine the thickness of the ice. The images were then transferred via satellite to the Coast Guard station. The Coast Guard then transmitted the pertinent images by VHF to the ship captains to help them select the best route. The Great Lakes ice mapping devices were first tested on NASA aircraft during the winter of 1972 and 1973. The pulsed radar system was transferred to the Coast Guard’s C-130 aircraft for the 1975 and 1976 winter. The SLAR was installed in the rear cargo door, and the small S-band antenna was mounted to the underside of the aircraft. Coast Guard flights began in January 1975 at an altitude of 11,000 feet. Early in the program, teams of guardsmen and NASA researchers frequently set out in boats to take samples and measurements of the ice in order to verify the radar information.

Plant Uptake of Atmospheric Carbonyl Sulfide in Coast Redwood Forests

NASA Astrophysics Data System (ADS)

Campbell, J. E.; Whelan, M. E.; Berry, J. A.; Hilton, T. W.; Zumkehr, A.; Stinecipher, J.; Lu, Y.; Kornfeld, A.; Seibt, U.; Dawson, T. E.; Montzka, S. A.; Baker, I. T.; Kulkarni, S.; Wang, Y.; Herndon, S. C.; Zahniser, M. S.; Commane, R.; Loik, M. E.

2017-12-01

The future resilience of coast redwoods (Sequoia sempervirens) is now of critical concern due to the detection of a 33% decline in California coastal fog over the 20th century. However, ecosystem-scale measurements of photosynthesis and stomatal conductance are challenging in coast redwood forests, making it difficult to anticipate the impacts of future changes in fog. To address this methodological problem, we explore coastal variations in atmospheric carbonyl sulfide (COS or OCS), which could potentially be used as a tracer of these ecosystem processes. We conducted atmospheric flask campaigns in coast redwood sites, sampling at surface heights and in the canopy ( 70 m), at the University of California Landels-Hill Big Creek Reserve and Big Basin State Park. We simulated COS atmosphere-biosphere exchange with a high-resolution 3-D model to interpret these data. Flask measurements indicated a persistent daytime drawdown between the coast and the downwind forest (45 ± 6 ppt COS) that is consistent with the expected relationship between COS plant uptake, stomatal conductance, and gross primary production. Other sources and sinks of COS that could introduce noise to the COS tracer technique (soils, anthropogenic activity, nocturnal plant uptake, and surface hydrolysis on leaves) are likely to be small relative to daytime COS plant uptake. These results suggest that COS measurements may be useful for making ecosystem-scale estimates of carbon, water, and energy exchange in coast redwood forests.

SNAP-25 is a promising novel cerebrospinal fluid biomarker for synapse degeneration in Alzheimer's disease.

PubMed

Brinkmalm, Ann; Brinkmalm, Gunnar; Honer, William G; Frölich, Lutz; Hausner, Lucrezia; Minthon, Lennart; Hansson, Oskar; Wallin, Anders; Zetterberg, Henrik; Blennow, Kaj; Öhrfelt, Annika

2014-11-23

Synaptic degeneration is an early pathogenic event in Alzheimer's disease, associated with cognitive impairment and disease progression. Cerebrospinal fluid biomarkers reflecting synaptic integrity would be highly valuable tools to monitor synaptic degeneration directly in patients. We previously showed that synaptic proteins such as synaptotagmin and synaptosomal-associated protein 25 (SNAP-25) could be detected in pooled samples of cerebrospinal fluid, however these assays were not sensitive enough for individual samples. We report a new strategy to study synaptic pathology by using affinity purification and mass spectrometry to measure the levels of the presynaptic protein SNAP-25 in cerebrospinal fluid. By applying this novel affinity mass spectrometry strategy on three separate cohorts of patients, the value of SNAP-25 as a cerebrospinal fluid biomarker for synaptic integrity in Alzheimer's disease was assessed for the first time. We found significantly higher levels of cerebrospinal fluid SNAP-25 fragments in Alzheimer's disease, even in the very early stages, in three separate cohorts. Cerebrospinal fluid SNAP-25 differentiated Alzheimer's disease from controls with area under the curve of 0.901 (P < 0.0001). We developed a sensitive method to analyze SNAP-25 levels in individual CSF samples that to our knowledge was not possible previously. Our results support the notion that synaptic biomarkers may be important tools for early diagnosis, assessment of disease progression, and to monitor drug effects in treatment trials.

Reactive oxygen species level in follicular fluid--embryo quality marker in IVF?

PubMed

Das, S; Chattopadhyay, R; Ghosh, S; Ghosh, S; Goswami, S K; Chakravarty, B N; Chaudhury, K

2006-09-01

The impact of oxidative stress in female reproduction is not clear. Contradictory reports on the effect of various oxidative stress markers on follicular fluid, oocytes and embryo quality and fertilization potential exist. The objectives of this study were to examine reactive oxygen species (ROS) levels in follicular fluid of women undergoing IVF and to relate these levels to embryo formation and quality. A total of 208 follicular fluid samples were obtained from 78 women undergoing controlled ovarian stimulation and analysed for ROS and lipid peroxidation (LPO). These samples were divided into groups I and II which represented follicular fluid containing grade III and grade II oocytes, respectively. These groups were further subdivided into groups IA, IB, IIA and IIB according to embryo quality. Subgroups IA and IIA consisted of follicular fluid samples corresponding to grade I/II embryo formation. Subgroups IB and IIB represented fertilization failure/pro-nucleolus (PN) arrest/grade III embryos. No significant correlation was observed in ROS levels on comparing groups I and II (P > 0.05). However, ROS levels were observed to be significantly different on comparing groups IA and IB (P < or = 0.01) and groups IIA and IIB (P < or = 0.05). LPO levels further supported our results. ROS levels in follicular fluid appear to play a significant role in embryo formation and quality.

Bacterial Diversity in Submarine Groundwater along the Coasts of the Yellow Sea

PubMed Central

Ye, Qi; Liu, Jianan; Du, Jinzhou; Zhang, Jing

2016-01-01

Submarine groundwater (SGD) is one of the most significant pathways for the exchange of groundwater and/or source of nutrients, metals and carbon to the ocean, subsequently cause deleterious impacts on the coastal ecosystems. Microorganisms have been recognized as the important participators in the biogeochemical processes in the SGD. In this study, by utilizing 16S rRNA-based Illumina Miseq sequencing technology, we investigated bacterial diversity and distribution in both fresh well water and brackish recirculated porewater along the coasts in the Yellow Sea. The results showed that Actinobacteria and Betaproteobacteria, especially Comamonas spp. and Limnohabitans spp. were dominated in fresh well samples. Distinct patterns of bacterial communities were found among the porewater samples due to different locations, for examples, Cyanbacteria was the most abundant in the porewater samples far from the algal bloomed areas. The analysis of correlation between representative bacterial taxonomic groups and the contexture environmental parameters showed that fresh well water and brackish porewater might provide different nutrients to the coastal waters. Potential key bacterial groups such as Comamonas spp. may be excellent candidates for the bioremediation of the natural pollutants in the SGD. Our comprehensive understanding of bacterial diversity in the SGD along the coasts of the Yellow Sea will create a basis for designing the effective clean-up approach in-situ, and provide valuable information for the coastal management. PMID:26779172

An entomological and seroepidemiological study of the vectorial-transmission risk of Chagas disease in the coast of northern Chile.

PubMed

González, C R; Reyes, C; Canals, A; Parra, A; Muñoz, X; Rodríguez, K

2015-12-01

Four species of triatomines are known from Chile: Triatoma infestans Klug, Mepraia spinolai Porter, M. gajardoi Frías, Henry & González, and M. parapatrica Frías (Hemiptera: Reduviidae), the last three are endemic. The geographical distribution of M. gajardoi includes the coastal areas in the north of Chile between 18° and 21°S, an area with both a resident workforce and summer-season visitors. A study was developed to assess the risk of vectorial transmission of Chagas disease by M. gajardoi in hut settlements on the coast of the Tarapacá Region, in particular in Caleta San Marcos and Caleta Río Seco. The study comprised fingerstick sampling of 95 persons, venous samples from 29 domestic dogs and capture of 52 triatomines, from both fishing coves. The samples were analysed by enzyme-linked immunosorbent assay (ELISA) and polymerase chain reaction (PCR) techniques. The results show that, of the total number of persons studied, 100% were negative for Trypanosoma cruzi Chagas (Trypanosomatida: Trypanosomatidae) antibodies, 10.34% of canids were positive for the antibody and 5.8% of M. gajardoi were infected to the PCR technique. The presence of this species in areas close to human settlements constitutes a risk to human populations established on the coast of northern Chile. © 2015 The Royal Entomological Society.

Fluid inclusions in Martian samples: Clues to early crustal development and the hydrosphere

NASA Technical Reports Server (NTRS)

Brown, Philip E.

1988-01-01

Major questions about Mars that could be illuminated by examining fluid inclusions in Martian samples include: (1) the nature, extent and timing of development (and decline) of the hydrosphere that existed on the planet; and (2) the evolution of the crust. Fluid inclusion analyses of appropriate samples could provide critical data to use in comparison with data derived from analogous terrestrial studies. For this study, sample handling and return restrictions are unlikely to be as restrictive as the needs of other investigators. The main constraint is that the samples not be subjected to excessively high temperatures. An aqueous fluid inclusion trapped at elevated pressure and temperature will commonly consist of liquid water and water vapor at room temperature. Heating (such as is done in the laboratory to fix P-V-T data for the inclusion) results in moderate pressure increases up to the liquid-vapor homogenization temperature followed by a sharp increase in pressure with continued heating because the inclusion is effectively a fixed volume system. This increased pressure can rupture the inclusion; precise limits are dependent on size, shape, and composition as well as the host material.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rashid, Nur Shahidah Abdul; Sarmani, Sukiman; Majid, Amran Ab.

238U radionuclide is a naturally occuring radioactive material that can be found in soil. In this study, the solubility of 238U radionuclide obtained from various types of soil in synthetic gastrointestinal fluids was analysed by “US P in vitro” digestion method. The synthetic gastrointestinal fluids were added to the samples with well-ordered, mixed throughly and incubated according to the human physiology digestive system. The concentration of 238U radionuclide in the solutions extracted from the soil was measured using Induced Coupling Plasma Mass Spectrometer (ICP-MS). The concentration of 238U radionuclide from the soil samples in synthetic gastrointestinal fluids showed different valuesmore » due to different homogenity of soil types and chemical reaction of 238U radionuclide. In general, the solubility of 238U radionuclide in gastric fluid was higher (0.050 – 0.209 ppm) than gastrointestinal fluids (0.024 – 0.050 ppm). It could be concluded that the US P in vitro digestion method is practicle for estimating the solubility of 238U radionuclide from soil materials and could be useful for monitoring and risk assessment purposes applying to environmental, health and contaminated soil samples.« less

Molecular analysis of bacterial diversity in kerosene-based drilling fluid from the deep ice borehole at Vostok, East Antarctica.

PubMed

Alekhina, Irina A; Marie, Dominique; Petit, Jean Robert; Lukin, Valery V; Zubkov, Vladimir M; Bulat, Sergey A

2007-02-01

Decontamination of ice cores is a critical issue in phylogenetic studies of glacial ice and subglacial lakes. At the Vostok drill site, a total of 3650 m of ice core have now been obtained from the East Antarctic ice sheet. The ice core surface is coated with a hard-to-remove film of impure drilling fluid comprising a mixture of aliphatic and aromatic hydrocarbons and foranes. In the present study we used 16S rRNA gene sequencing to analyze the bacterial content of the Vostok drilling fluid sampled from four depths in the borehole. Six phylotypes were identified in three of four samples studied. The two dominant phylotypes recovered from the deepest (3400 and 3600 m) and comparatively warm (-10 degrees C and -6 degrees C, respectively) borehole horizons were from within the genus Sphingomonas, a well-known degrader of polyaromatic hydrocarbons. The remaining phylotypes encountered in all samples proved to be human- or soil-associated bacteria and were presumed to be drilling fluid contaminants of rare occurrence. The results obtained indicate the persistence of bacteria in extremely cold, hydrocarbon-rich environments. They show the potential for contamination of ice and subglacial water samples during lake exploration, and the need to develop a microbiological database of drilling fluid findings.

Process and apparatus for obtaining samples of liquid and gas from soil

DOEpatents

Rossabi, J.; May, C.P.; Pemberton, B.E.; Shinn, J.; Sprague, K.

1999-03-30

An apparatus and process for obtaining samples of liquid and gas from subsurface soil is provided having filter zone adjacent an external expander ring. The expander ring creates a void within the soil substrate which encourages the accumulation of soil-borne fluids. The fluids migrate along a pressure gradient through a plurality of filters before entering a first chamber. A one-way valve regulates the flow of fluid into a second chamber in further communication with a collection tube through which samples are collected at the surface. A second one-way valve having a reverse flow provides additional communication between the chambers for the pressurized cleaning and back-flushing of the apparatus. 8 figs.

Process and apparatus for obtaining samples of liquid and gas from soil

DOEpatents

Rossabi, Joseph; May, Christopher P.; Pemberton, Bradley E.; Shinn, Jim; Sprague, Keith

1999-01-01

An apparatus and process for obtaining samples of liquid and gas from subsurface soil is provided having filter zone adjacent an external expander ring. The expander ring creates a void within the soil substrate which encourages the accumulation of soil-borne fluids. The fluids migrate along a pressure gradient through a plurality of filters before entering a first chamber. A one-way valve regulates the flow of fluid into a second chamber in further communication with a collection tube through which samples are collected at the surface. A second one-way valve having a reverse flow provides additional communication between the chambers for the pressurized cleaning and back-flushing of the apparatus.

Assessment of real-time PCR method for detection of EGFR mutation using both supernatant and cell pellet of malignant pleural effusion samples from non-small-cell lung cancer patients.

PubMed

Shin, Saeam; Kim, Juwon; Kim, Yoonjung; Cho, Sun-Mi; Lee, Kyung-A

2017-10-26

EGFR mutation is an emerging biomarker for treatment selection in non-small-cell lung cancer (NSCLC) patients. However, optimal mutation detection is hindered by complications associated with the biopsy procedure, tumor heterogeneity and limited sensitivity of test methodology. In this study, we evaluated the diagnostic utility of real-time PCR using malignant pleural effusion samples. A total of 77 pleural fluid samples from 77 NSCLC patients were tested using the cobas EGFR mutation test (Roche Molecular Systems). Pleural fluid was centrifuged, and separated cell pellets and supernatants were tested in parallel. Results were compared with Sanger sequencing and/or peptide nucleic acid (PNA)-mediated PCR clamping of matched tumor tissue or pleural fluid samples. All samples showed valid real-time PCR results in one or more DNA samples extracted from cell pellets and supernatants. Compared with other molecular methods, the sensitivity of real-time PCR method was 100%. Concordance rate of real-time PCR and Sanger sequencing plus PNA-mediated PCR clamping was 98.7%. We have confirmed that real-time PCR using pleural fluid had a high concordance rate compared to conventional methods, with no failed samples. Our data demonstrated that the parallel real-time PCR testing using supernatant and cell pellet could offer reliable and robust surrogate strategy when tissue is not available.

The importance of interleukin-8 as a neutrophil chemoattractant in the lungs of cattle with pneumonic pasteurellosis.

PubMed Central

Caswell, J L; Middleton, D M; Gordon, J R

2001-01-01

Interleukin-8 (IL-8), an in vitro and in vivo neutrophil chemoattractant, is expressed at high levels in the lesions observed in bovine pneumonic pasteurellosis. Because of the role of neutrophils in the pathogenesis of pneumonic pasteurellosis, we investigated the relative importance of IL-8 as a neutrophil chemoattractant in this disease. Bronchoalveolar lavage (BAL) fluid was harvested from calves experimentally infected with bovine herpesvirus-1 and challenged with Mannheimia haemolytica. Neutrophil chemotactic activity was measured in pneumonic BAL fluid samples treated with a neutralizing monoclonal antibody to ovine IL-8, and compared to the activity in samples treated with an isotype-matched control antibody. Bronchoalveolar lavage fluid was analyzed at a dilution which induced a half-maximal response, and the concentrations of antibody were optimized in a preliminary experiment. Following incubation of replicate samples of diluted pneumonic bovine BAL fluid with 70 microg/mL of IL-8-neutralizing antibody or control antibody, the neutrophil chemotactic activities of the samples were determined using an in vitro microchemotaxis assay. Overall, pretreatment of BAL fluid samples with neutralizing anti-IL-8 antibody reduced neutrophil chemotactic activity by 15% to 60%, compared to pretreatment with control antibody. This effect was highly significant (P < 0.001), and was present in 5 of 5 samples. These data indicate that IL-8 is an important neutrophil chemoattractant in calves with pneumonic pasteurellosis, but that mediators with actions redundant to those of IL-8 must also be present in the lesions. PMID:11768129

Persistence of El Niño effects on stable isotope ratios in cellulose of Coast Redwood tree-rings

NASA Astrophysics Data System (ADS)

Johnstone, J. A.

2005-12-01

An anomalously wet El Niño winter in 1998 in Sonoma County, California, USA produced sharp changes in the oxygen and carbon isotope ratios of tree-ring cellulose of Coast Redwood ( Sequoia sempervirens (D.Don) Endl.) which persisted for several years thereafter. High-resolution cellulose sampling reveals a negative shift in both δ18O and δ13C, consistent with greater reliance on winter rain water supplies (rather than summer fog) as well as reduced drought stress due to the anomalous precipitation. The annual cycle of these isotopic ratios is also muted for several years following the 1998 winter. These observations suggest a disproportionate and persistent influence of extreme years in the interannual variability of Coast Redwood hydrology and physiology.

Presence of bile acids in human follicular fluid and their relation with embryo development in modified natural cycle IVF.

PubMed

Nagy, R A; van Montfoort, A P A; Dikkers, A; van Echten-Arends, J; Homminga, I; Land, J A; Hoek, A; Tietge, U J F

2015-05-01

Are bile acids (BA) and their respective subspecies present in human follicular fluid (FF) and do they relate to embryo quality in modified natural cycle IVF (MNC-IVF)? BA concentrations are 2-fold higher in follicular fluid than in serum and ursodeoxycholic acid (UDCA) derivatives were associated with development of top quality embryos on Day 3 after fertilization. Granulosa cells are capable of synthesizing BA, but a potential correlation with oocyte and embryo quality as well as information on the presence and role of BA subspecies in follicular fluid have yet to be investigated. Between January 2001 and June 2004, follicular fluid and serum samples were collected from 303 patients treated in a single academic centre that was involved in a multicentre cohort study on the effectiveness of MNC-IVF. Material from patients who underwent a first cycle of MNC-IVF was used. Serum was not stored from all patients, and the available material comprised 156 follicular fluid and 116 matching serum samples. Total BA and BA subspecies were measured in follicular fluid and in matching serum by enzymatic fluorimetric assay and liquid chromatography-mass spectrometry, respectively. The association of BA in follicular fluid with oocyte and embryo quality parameters, such as fertilization rate and cell number, presence of multinucleated blastomeres and percentage of fragmentation on Day 3, was analysed. Embryos with eight cells on Day 3 after oocyte retrieval were more likely to originate from follicles with a higher level of UDCA derivatives than those with fewer than eight cells (P < 0.05). Furthermore, follicular fluid levels of chenodeoxycholic derivatives were higher and deoxycholic derivatives were lower in the group of embryos with fragmentation compared with those without (each P < 0.05). Levels of total BA were 2-fold higher in follicular fluid compared with serum (P < 0.001), but had no predictive value for oocyte and embryo quality. Only samples originating from first cycle MNC-IVF were used, which resulted in 14 samples only from women with an ongoing pregnancy, therefore further prospective studies are required to confirm the association of UDCA with IVF pregnancy outcomes. The inter-cycle variability of BA levels in follicular fluid within individuals has yet to be investigated. We checked for macroscopic signs of contamination of follicular fluid by blood but the possibility that small traces of blood were present within the follicular fluid remains. Finally, although BA are considered stable when stored at -20°C, there was a time lag of 10 years between the collection and analysis of follicular fluid and serum samples. The favourable relation between UDCA derivatives in follicular fluid and good embryo development and quality deserves further prospective research, with live birth rates as the end-point. This work was supported by a grant from the Netherlands Organisation for Scientific Research (VIDI Grant 917-56-358 to U.J.F.T.). No competing interests are reported. © The Author 2015. Published by Oxford University Press on behalf of the European Society of Human Reproduction and Embryology. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Effects of Hydrogeologic Conditions on Groundwater Contamination of CVOCs in the North Coast Karst Aquifer of Puerto Rico

NASA Astrophysics Data System (ADS)

Torres Torres, N. I.; Howard, J.; Padilla, I. Y.; Torres, P.; Cotto, I.; Irizarry, C.

2012-12-01

The karst system of northern Puerto Rico is the most productive aquifer of the island. It serves freshwater to industrial, domestic and agricultural purposes, and contributes to the ecological integrity of the region. The same characteristics that make this a highly productive aquifer, make it vulnerable to contamination of groundwater. Of particular importance is contamination with chlorinated volatile organic compounds (CVOCs), which have been related to preterm birth problems. A great extent of CVOC contamination has been seen in the North Coast of Puerto Rico since the 1970s. The main purposes of this study are (1) to relate the water quality of wells and springs with the hydrogeological conditions in the north coast limestone aquifer of Puerto Rico, and (2) to make a statistical analysis of the historical groundwater contamination in that area. To achieve these objectives, groundwater samples are collected from wells and springs during dry and wet seasons. Results show that trichloroethylene (TCE), tetrachloroethylene (PCE) and chloroform (TCM) are frequently detected in groundwater samples. A greater detection of CVOCs is detected during the wet season than the dry season. This is attributed to a greater capacity to flush stored contaminants during the wet season. Historical analysis of contamination in the north coast of Puerto Rico shows a high capacity of the aquifer to store and release contaminants. Future work will be focused the statistical analysis of the historical groundwater contamination data to understand the behavior of the contaminants in different hydrologic conditions.

Prenatal Exposure to Environmental Phenols: Concentrations in Amniotic Fluid and Variability in Urinary Concentrations during Pregnancy

PubMed Central

Wolff, Mary S.; Calafat, Antonia M.; Ye, Xiaoyun; Bausell, Rebecca; Meadows, Molly; Stone, Joanne; Slama, Rémy; Engel, Stephanie M.

2013-01-01

Background: Maternal urinary biomarkers are often used to assess fetal exposure to phenols and their precursors. Their effectiveness as a measure of exposure in epidemiological studies depends on their variability during pregnancy and their ability to accurately predict fetal exposure. Objectives: We assessed the relationship between urinary and amniotic fluid concentrations of nine environmental phenols, and the reproducibility of urinary concentrations, among pregnant women. Methods: Seventy-one women referred for amniocentesis were included. Maternal urine was collected at the time of the amniocentesis appointment and on two subsequent occasions. Urine and amniotic fluid were analyzed for 2,4- and 2,5-dichlorophenols, bisphenol A, benzophenone-3, triclosan, and methyl-, ethyl-, propyl-, and butylparabens using online solid phase extraction–high performance liquid chromatography–isotope dilution tandem mass spectrometry. Results: Only benzophenone-3 and propylparaben were detectable in more than half of the amniotic fluid samples; for these phenols, concentrations in amniotic fluid and maternal urine collected on the same day were positively correlated (ρ = 0.53 and 0.32, respectively). Other phenols were detected infrequently in amniotic fluid (e.g., bisphenol A was detected in only two samples). The intraclass correlation coefficients (ICCs) of urinary concentrations in samples from individual women ranged from 0.48 and 0.62 for all phenols except bisphenol A (ICC = 0.11). Conclusion: Amniotic fluid detection frequencies for most phenols were low. The reproducibility of urine measures was poor for bisphenol A, but good for the other phenols. Although a single sample may provide a reasonable estimate of exposure for some phenols, collecting multiple urine samples during pregnancy is an option to reduce exposure measurement error in studies regarding the effects of phenol prenatal exposure on health. Citation: Philippat C, Wolff MS, Calafat AM, Ye X, Bausell R, Meadows M, Stone J, Slama R, Engel SM. 2013. Prenatal exposure to environmental phenols: concentrations in amniotic fluid and variability in urinary concentrations during pregnancy. Environ Health Perspect 121:1225–1231; http://dx.doi.org/10.1289/ehp.1206335 PMID:23942273

Driving under the influence of cannabis: pitfalls, validation, and quality control of a UPLC-MS/MS method for the quantification of tetrahydrocannabinol in oral fluid collected with StatSure, Quantisal, or Certus collector.

PubMed

Wille, Sarah M R; Di Fazio, Vincent; Ramírez-Fernandez, Maria del Mar; Kummer, Natalie; Samyn, Nele

2013-02-01

"Driving under the influence of drugs" (DUID) has a large impact on the worldwide mortality risk. Therefore, DUID legislations based on impairment or analytical limits are adopted. Drug detection in oral fluid is of interest due to the ease of sampling during roadside controls. The prevalence of Δ9-tetrahydrocannabinol (THC) in seriously injured drivers ranges from 0.5% to 7.6% in Europe. For these reasons, the quantification of THC in oral fluid collected with 3 alternative on-site collectors is presented and discussed in this publication. An ultra-performance liquid chromatography-mass spectrometric quantification method for THC in oral fluid samples collected with the StatSure (Diagnostic Systems), Quantisal (Immunalysis), and Certus (Concateno) devices was validated according to the international guidelines. Small sample volumes of 100-200 μL were extracted using hexane. Special attention was paid to factors such as matrix effects, THC adsorption onto the collector, and stability in the collection fluid. A relatively high-throughput analysis was developed and validated according to ISO 17025 requirements. Although the effects of the matrix on the quantification could be minimized using a deuterated internal standard, and stability was acceptable according the validation data, adsorption of THC onto the collectors was a problem. For the StatSure device, THC was totally recovered from the collector pad after storage for 24 hours at room temperature or 7 days at 4°C. A loss of 15%-25% was observed for the Quantisal collector, whereas the recovery from the Certus device was irreproducible (relative standard deviation, 44%-85%) and low (29%-80%). During the roadside setting, a practical problem arose: small volumes of oral fluid (eg, 300 μL) were collected. However, THC was easily detected and concentrations ranged from 8 to 922 ng/mL in neat oral fluid. A relatively high-throughput analysis (40 samples in 4 hours) adapted for routine DUID analysis was developed and validated for THC quantification in oral fluid samples collected from drivers under the influence of cannabis.

Ceramic debris in hip prosthesis: correlation between synovial fluid and joint capsule.

PubMed

De Pasquale, Dalila; Stea, Susanna; Beraudi, Alina; Montesi, Monica; Squarzoni, Stefano; Toni, Aldo

2013-05-01

Detection of ceramic particles in synovial fluids allows early diagnosis of ceramic damage, but there is no evidence of a relationship between ceramic debris in the articular space and in the joint capsule. The aim of the present study is to verify if the particles isolated in the synovial fluid are comparable with those stored in the capsular tissue. Twenty-one patients were enrolled. Both synovial fluid and capsular samples were collected during revision surgery and ceramic particles were isolated and analyzed by scanning electron microscopy and energy-dispersive X-ray microanalysis. It resulted a significant correlation between the samples couples (18 out of 21). This study confirms that the synovial fluid analysis can give a clear definition of the presence of particles in the joint capsule. Copyright © 2013 Elsevier Inc. All rights reserved.

Effect of finite particle number sampling on baryon number fluctuations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Steinheimer, Jan; Koch, Volker

The effects of finite particle number sampling on the net baryon number cumulants, extracted from fluid dynamical simulations, are studied. The commonly used finite particle number sampling procedure introduces an additional Poissonian (or multinomial if global baryon number conservation is enforced) contribution which increases the extracted moments of the baryon number distribution. If this procedure is applied to a fluctuating fluid dynamics framework, one severely overestimates the actual cumulants. We show that the sampling of so-called test particles suppresses the additional contribution to the moments by at least one power of the number of test particles. We demonstrate this methodmore » in a numerical fluid dynamics simulation that includes the effects of spinodal decomposition due to a first-order phase transition. Furthermore, in the limit where antibaryons can be ignored, we derive analytic formulas which capture exactly the effect of particle sampling on the baryon number cumulants. These formulas may be used to test the various numerical particle sampling algorithms.« less

Effect of finite particle number sampling on baryon number fluctuations

DOE PAGES

Steinheimer, Jan; Koch, Volker

2017-09-28

The effects of finite particle number sampling on the net baryon number cumulants, extracted from fluid dynamical simulations, are studied. The commonly used finite particle number sampling procedure introduces an additional Poissonian (or multinomial if global baryon number conservation is enforced) contribution which increases the extracted moments of the baryon number distribution. If this procedure is applied to a fluctuating fluid dynamics framework, one severely overestimates the actual cumulants. We show that the sampling of so-called test particles suppresses the additional contribution to the moments by at least one power of the number of test particles. We demonstrate this methodmore » in a numerical fluid dynamics simulation that includes the effects of spinodal decomposition due to a first-order phase transition. Furthermore, in the limit where antibaryons can be ignored, we derive analytic formulas which capture exactly the effect of particle sampling on the baryon number cumulants. These formulas may be used to test the various numerical particle sampling algorithms.« less

Use of CFD for static sampling hood design: An example for methane flux assessment on landfill surfaces.

PubMed

Lucernoni, Federico; Rizzotto, Matteo; Tapparo, Federica; Capelli, Laura; Sironi, Selena; Busini, Valentina

2016-11-01

The work focuses on the principles for the design of a specific static hood and on the definition of an optimal sampling procedure for the assessment of landfill gas (LFG) surface emissions. This is carried out by means of computational fluid dynamics (CFD) simulations to investigate the fluid dynamics conditions of the hood. The study proves that understanding the fluid dynamic conditions is fundamental in order to understand the sampling results and correctly interpret the measured concentration values by relating them to a suitable LFG emission model, and therefore to estimate emission rates. For this reason, CFD is a useful tool for the design and evaluation of sampling systems, among others, to verify the fundamental hypotheses on which the mass balance for the sampling hood is defined. The procedure here discussed, which is specific for the case of the investigated landfill, can be generalized to be applied also to different scenarios, where hood sampling is involved. Copyright © 2016 Elsevier Ltd. All rights reserved.

The Green River natural analogue as a field laboratory to study the long-term fate of CO2 in the subsurface

NASA Astrophysics Data System (ADS)

Busch, Andreas; Kampman, Niko; Hangx, Suzanne; Bertier, Pieter; Bickle, Mike; Harrington, Jon

2015-04-01

Understanding the long-term response of CO2 injected into porous reservoirs is one of the most important aspects to demonstrate safe and permanent storage. At the same time this is one of the least understood aspects of CCS in general. The reasons are that 'long-term', in the sense of hundreds to thousands of years, is impractical from a laboratory and rather idealised from a reservoir modelling perspective. However understanding the coupled long-term hydro-chemical-mechanical response of a reservoir-seal pair following CO2 injection is highly desirable to improve confidence and trust from a regulator and societal perspective, as well as to improve risk assessment and risk reduction. In order to provide one building block to advance understanding of this subject, in July 2012 Shell recovered some 300m of core from a scientific drill hole through a natural CO2 field near Green River, Utah. This core transected two sandstone formations (Entrada and Navajo) and one intervening seal layer, composed of interbedded marine clay-/silt and sandstones (Carmel Fm.). Fluid samples and core material were taken adjacent to the Little Grand Wash Fault (LGW), along which CO2-charged fluids traverse from depth to the surface and which is believed to be the migration pathway for CO2 inflow into the reservoirs. In-situ pH, CO2 concentrations, and fluid element and isotope geochemistry were determined from wireline downhole sampling of pressurized fluids taken from the Navajo reservoirs. The fluid geochemistry provides important constraints on reservoir filling by flow of CO2 -charged brines through the LGW fault damage zone, macro-scale fluid flow in the reservoirs and the state of fluid-mineral thermodynamic disequilibrium, from which the nature of the fluid-mineral reactions can be interpreted. In addition to core samples, we obtained control samples from stratigraphically equivalent outcrop locations and drill holes that were not subject to alterations by CO2 -charged fluids and served as a direct comparison to the altered samples. We obtained geomechanical, mineralogical, geochemical and petrophysical laboratory data along the entire length of the core and from the control samples. Furthermore, we performed more detailed studies through portions of the caprock in direct contact with the CO2-charged reservoirs. This was done to constrain the nature and penetration depths of the CO2-promoted fluid-mineral reaction fronts. These reactions have taken place in the last ~100,000 years, which has been set as an upper limit for the onset of CO2 influx into the formations. This data has been used as input for reactive (transport) modeling. In addition, we compared geomechanical data from the CO2 -exposed core and the unreacted control samples to assess the mechanical stability of reservoir and seal rocks in a CO2 storage complex following mineral dissolution and precipitation for thousands of years.

Analysis of sources of bulk conductivity change in saturated silica sand after unbuffered TCE oxidation by permanganate.

PubMed

Hort, Ryan D; Revil, André; Munakata-Marr, Junko

2014-09-01

Time lapse resistivity surveys could potentially improve monitoring of permanganate-based in situ chemical oxidation (ISCO) of organic contaminants such as trichloroethene (TCE) by tracking changes in subsurface conductivity that result from injection of permanganate and oxidation of the contaminant. Bulk conductivity and pore fluid conductivity changes during unbuffered TCE oxidation using permanganate are examined through laboratory measurements and conductivity modeling using PHREEQC in fluid samples and porous media samples containing silica sand. In fluid samples, oxidation of one TCE molecule produces three chloride ions and one proton, resulting in an increase in fluid electrical conductivity despite the loss of two permanganate ions in the reaction. However, in saturated sand samples in which up to 8mM TCE was oxidized, at least 94% of the fluid conductivity associated with the presence of protons was removed within 3h of sand contact, most likely through protonation of silanol groups found on the surface of the sand grains. Minor conductivity effects most likely associated with pH-dependent reductive dissolution of manganese dioxide were also observed but not accounted for in pore-fluid conductivity modeling. Unaccounted conductivity effects resulted in an under-calculation of post-reaction pore fluid conductivity of 2.1% to 5.5%. Although small increases in the porous media formation factor resulting from precipitation of manganese dioxide were detected (about 3%), these increases could not be confirmed to be statistically significant. Both injection of permanganate and oxidation of TCE cause increases in bulk conductivity that would be detectable through time-lapse resistivity surveys in field conditions. Copyright © 2014 Elsevier B.V. All rights reserved.

Relationship between automated total nucleated cell count and enumeration of cells on direct smears of canine synovial fluid.

PubMed

Dusick, Allison; Young, Karen M; Muir, Peter

2014-12-01

Canine osteoarthritis is a common disorder seen in veterinary clinical practice and causes considerable morbidity in dogs as they age. Synovial fluid analysis is an important tool for diagnosis and treatment of canine joint disease and obtaining a total nucleated cell count (TNCC) is particularly important. However, the low sample volumes obtained during arthrocentesis are often insufficient for performing an automated TNCC, thereby limiting diagnostic interpretation. The aim of the present study was to investigate whether estimation of TNCC in canine synovial fluid could be achieved by performing manual cell counts on direct smears of fluid. Fifty-eight synovial fluid samples, taken by arthrocentesis from 48 dogs, were included in the study. Direct smears of synovial fluid were prepared, and hyaluronidase added before cell counts were obtained using a commercial laser-based instrument. A protocol was established to count nucleated cells in a specific region of the smear, using a serpentine counting pattern; the mean number of nucleated cells per 400 × field was then calculated. There was a positive correlation between the automated TNCC and mean manual cell count, with more variability at higher TNCC. Regression analysis was performed to estimate TNCC from manual counts. By this method, 78% of the samples were correctly predicted to fall into one of three categories (within the reference interval, mildly to moderately increased, or markedly increased) relative to the automated TNCC. Intra-observer and inter-observer agreement was good to excellent. The results of the study suggest that interpretation of canine synovial fluid samples of low volume can be aided by methodical manual counting of cells on direct smears. Copyright © 2014 Elsevier Ltd. All rights reserved.

Liquid Microjunction Surface Sampling Probe Fluid Dynamics: Computational and Experimental Analysis of Coaxial Intercapillary Positioning Effects on Sample Manipulation

DOE Office of Scientific and Technical Information (OSTI.GOV)

ElNaggar, Mariam S; Barbier, Charlotte N; Van Berkel, Gary J

A coaxial geometry liquid microjunction surface sampling probe (LMJ-SSP) enables direct extraction of analytes from surfaces for subsequent analysis by techniques like mass spectrometry. Solution dynamics at the probe-to-sample surface interface in the LMJ-SSP has been suspected to influence sampling efficiency and dispersion but has not been rigorously investigated. The effect on flow dynamics and analyte transport to the mass spectrometer caused by coaxial retraction of the inner and outer capillaries from each other and the surface during sampling with a LMJ-SSP was investigated using computational fluid dynamics and experimentation. A transparent LMJ-SSP was constructed to provide the means formore » visual observation of the dynamics of the surface sampling process. Visual observation, computational fluid dynamics (CFD) analysis, and experimental results revealed that inner capillary axial retraction from the flush position relative to the outer capillary transitioned the probe from a continuous sampling and injection mode through an intermediate regime to sample plug formationmode caused by eddy currents at the sampling end of the probe. The potential for analytical implementation of these newly discovered probe operational modes is discussed.« less

Ecology of Vibrio vulnificus in estuarine waters of eastern North Carolina.

PubMed

Pfeffer, Courtney S; Hite, M Frances; Oliver, James D

2003-06-01

While several studies on the ecology of Vibrio vulnificus in Gulf Coast environments have been reported, there is little information on the distribution of this pathogen in East Coast waters. Thus, we conducted a multiyear study on the ecology of V. vulnificus in estuarine waters of the eastern United States, employing extensive multiple regression analyses to reveal the major environmental factors controlling the presence of this pathogen, and of Vibrio spp., in these environments. Monthly field samplings were conducted between July 2000 and April 2002 at six different estuarine sites along the eastern coast of North Carolina. At each site, water samples were taken and nine physicochemical parameters were measured. V. vulnificus isolates, along with estuarine bacteria, Vibrio spp., Escherichia coli organisms, and total coliforms, were enumerated in samples from each site by using selective media. During the last 6 months of the study, sediment samples were also analyzed for the presence of vibrios, including V. vulnificus. Isolates were confirmed as V. vulnificus by using hemolysin gene PCR or colony hybridization. V. vulnificus was isolated only when water temperatures were between 15 and 27 degrees C, and its presence correlated with water temperature and dissolved oxygen and vibrio levels. Levels of V. vulnificus in sediments were low, and no evidence for an overwintering in this environment was found. Multiple regression analysis indicated that vibrio levels were controlled primarily by temperature, turbidity, and levels of dissolved oxygen, estuarine bacteria, and coliforms. Water temperature accounted for most of the variability in the concentrations of both V. vulnificus (47%) and Vibrio spp. (48%).

Mesohaline submerged aquatic vegetation survey along the U.S. gulf of Mexico coast, 2001 and 2002: A salinity gradient approach

USGS Publications Warehouse

Merino, J.H.; Carter, J.; Merino, S.L.

2009-01-01

Distribution of marine submerged aquatic vegetation (SAV; i.e., seagrass) in the northern Gulf of Mexico coast has been documented, but there are nonmarine submersed or SAV species occurring in estuarine salinities that have not been extensively reported. We sampled 276 SAV beds along the gulf coast in Florida, Alabama, Mississippi, Louisiana, and Texas in 2001 and 2002 in oligohaline to polyhaline (0 to 36 parts per thousand) waters to determine estuarine SAV species distribution and identify mesohaline SAV communities. A total of 20 SAV and algal species was identified and habitat characteristics such as salinity, water depth, pH, conductivity, turbidity, dissolved oxygen, and sediment composition were collected. Fourteen SAV species occurred two or more times in our samples. The most frequently occurring species was Ruppia maritima L. (n = 148), occurring in over half of SAV beds sampled. Eleocharis sp. (n = 47), characterized with an emergent rather than submerged growth form, was a common genus in the SAV beds sampled. A common marine species was Halodule wrightii Asch. (n = 36). Nonindigenous species Myriophyllum spicatum L. (n = 31) and Hydrilla verticillata (L. f.) Royle (n = 6) were present only in oligohaline water. Analyzing species occurrence and environmental characteristics using canonical correspondence and two-way indicator species analysis, we identify five species assemblages distinguished primarily by salinity and depth. Our survey increases awareness of nonmarine SAV as a natural resource in the gulf, and provides baseline data for future research. ?? 2009 by the Marine Environmental Sciences Consortium of Alabama.

Molecular Diagnosis of Orthopedic-Device-Related Infection Directly from Sonication Fluid by Metagenomic Sequencing

PubMed Central

Sanderson, Nicholas D.; Atkins, Bridget L.; Brent, Andrew J.; Cole, Kevin; Foster, Dona; McNally, Martin A.; Oakley, Sarah; Peto, Leon; Taylor, Adrian; Peto, Tim E. A.; Crook, Derrick W.; Eyre, David W.

2017-01-01

ABSTRACT Culture of multiple periprosthetic tissue samples is the current gold standard for microbiological diagnosis of prosthetic joint infections (PJI). Additional diagnostic information may be obtained through culture of sonication fluid from explants. However, current techniques can have relatively low sensitivity, with prior antimicrobial therapy and infection by fastidious organisms influencing results. We assessed if metagenomic sequencing of total DNA extracts obtained direct from sonication fluid can provide an alternative rapid and sensitive tool for diagnosis of PJI. We compared metagenomic sequencing with standard aerobic and anaerobic culture in 97 sonication fluid samples from prosthetic joint and other orthopedic device infections. Reads from Illumina MiSeq sequencing were taxonomically classified using Kraken. Using 50 derivation samples, we determined optimal thresholds for the number and proportion of bacterial reads required to identify an infection and confirmed our findings in 47 independent validation samples. Compared to results from sonication fluid culture, the species-level sensitivity of metagenomic sequencing was 61/69 (88%; 95% confidence interval [CI], 77 to 94%; for derivation samples 35/38 [92%; 95% CI, 79 to 98%]; for validation samples, 26/31 [84%; 95% CI, 66 to 95%]), and genus-level sensitivity was 64/69 (93%; 95% CI, 84 to 98%). Species-level specificity, adjusting for plausible fastidious causes of infection, species found in concurrently obtained tissue samples, and prior antibiotics, was 85/97 (88%; 95% CI, 79 to 93%; for derivation samples, 43/50 [86%; 95% CI, 73 to 94%]; for validation samples, 42/47 [89%; 95% CI, 77 to 96%]). High levels of human DNA contamination were seen despite the use of laboratory methods to remove it. Rigorous laboratory good practice was required to minimize bacterial DNA contamination. We demonstrate that metagenomic sequencing can provide accurate diagnostic information in PJI. Our findings, combined with the increasing availability of portable, random-access sequencing technology, offer the potential to translate metagenomic sequencing into a rapid diagnostic tool in PJI. PMID:28490492

Mineralogical, crystallographic and morphological characteristics of natural kaolins from the Ivory Coast (West Africa)

NASA Astrophysics Data System (ADS)

Sei, J.; Morato, F.; Kra, G.; Staunton, S.; Quiquampoix, H.; Jumas, J. C.; Olivier-Fourcade, J.

2006-10-01

Thirteen clay samples from four deposits in the Ivory Coast (West Africa) were studied using X-ray diffraction, thermogravimetric analysis and chemical analysis. Mineralogical, crystallographic and morphological characteristics of these samples are given. Kaolinite is the principal mineral but other minerals are present in small quantities: illite, quartz, anatase and iron oxides (oxides and oxyhydroxides). The crystallographic, morphological and surface characteristics are influenced by the presence of these impurities. In particular, the presence of iron oxides was associated with reduced structural ordering and thermal stability of kaolinite and increased specific surface area. These clays could be used in the ceramics industry to make tiles and bricks, and also in agronomy as supports for chemical fertilizers or for environmental protection by immobilising potentially toxic waste products.

Deep electrical resistivity structure of northwestern Costa Rica

NASA Astrophysics Data System (ADS)

Brasse, H.; Kapinos, G.; Mütschard, L.; Alvarado, G. E.; Worzewski, T.; Jegen, M.

2009-01-01

First long-period magnetotelluric investigations were conducted in early 2008 in northwestern Costa Rica, along a profile that extends from the coast of the Pacific Ocean, traverses the volcanic arc and ends currently at the Nicaraguan border. The aim of this study is to gain insight into the electrical resistivity structure and thus fluid distribution at the continental margin where the Cocos plate subducts beneath the Caribbean plate. Preliminary two-dimensional models map the only moderately resistive mafic/ultramafic complexes of the Nicoya Peninsula (resistivity of a few hundred Ωm), the conductive forearc and the backarc basins (several Ωm). Beneath the backarc basin the data image a poor conductor in the basement with a clear termination in the south, which may tentatively be interpreted as the Santa Elena Suture. The volcanic arc shows no pronounced anomaly at depth, but a moderate conductor underlies the backarc with a possible connection to the upper mantle. A conductor at deep-crustal levels in the forearc may reflect fluid release from the downgoing slab.

Method for nucleic acid isolation using supercritical fluids

DOEpatents

Nivens, D.E.; Applegate, B.M.

1999-07-13

A method is disclosed for detecting the presence of a microorganism in an environmental sample involves contacting the sample with a supercritical fluid to isolate nucleic acid from the microorganism, then detecting the presence of a particular sequence within the isolated nucleic acid. The nucleic acid may optionally be subjected to further purification. 4 figs.

Changes in Ultrasonic Velocity from Fluid Substitution, Calculated with Laboratory Methods, Digital Rock Physics, and Biot Theory

NASA Astrophysics Data System (ADS)

Goldfarb, E. J.; Ikeda, K.; Tisato, N.

2017-12-01

Seismic and ultrasonic velocities of rocks are function of several variables including fluid saturation and type. Understanding the effect of each variable on elastic waves can be valuable when using seismic methods for subsurface modeling. Fluid type and saturation are of specific interest to volcanology, water, and hydrocarbon exploration. Laboratory testing is often employed to understand the effects of fluids on elastic waves. However, laboratory testing is expensive and time consuming. It normally requires cutting rare samples into regular shapes. Fluid injection can also destroy specimens as removing the fluid after testing can prove difficult. Another option is theoretical modeling, which can be used to predict the effect of fluids on elastic properties, but it is often inaccurate. Alternatively, digital rock physics (DRP) can be used to investigate the effect of fluid substitution. DRP has the benefit of being non invasive, as it does not require regular sample shapes or fluid injection. Here, we compare the three methods for dry and saturated Berea sandstone to test the reliability of DRP. First, ultrasonic velocities were obtained from laboratory testing. Second, for comparison, we used a purely theoretical approach - i.e., Hashin-Shtrikman and Biot theory - to estimate the wave speeds at dry and wet conditions. Third, we used DRP. The dry sample was scanned with micro Computed Tomography (µCT), and a three dimensional (3D) array was recorded. We employed a segmentation-less method to convert each 3D array value to density, porosity, elastic moduli, and wave speeds. Wave propagation was simulated numerically at similar frequency as the laboratory. To simulate fluid substitution, we numerically substituted air values for water and repeated the simulation. The results from DRP yielded similar velocities to the laboratory, and accurately predicted the velocity change from fluid substitution. Theoretical modeling could not accurately predict velocity, and under-predicted the velocity change from fluid substitution. The mathematical approach proved to be a poor comparison for the laboratory measurement. DRP proved to be effective, and could be used in future with drill cuttings, perhaps to limit the use of expensive cores. DRP could also limit the requirement for physically testing fluid substitution.

Coupled deformation and dehydration processes in smectite-rich sediments constrained by laboratory experiments

NASA Astrophysics Data System (ADS)

Huepers, Andre; Kopf, Achim J.

2013-04-01

Subduction zones play a central role in the geological activity of the earth which is expressed as devastating events such as earthquakes, tsunamis and explosive volcanism. Many processes that lead to such catastrophic behavior are driven by fluids, which in turn affect the rock mechanical behavior. The kinetic reaction of hydrous smectite to illite is widely accepted as a fluid source in subduction zone forearcs that also affects the mechanical state of subduction zone sediments. The released fluids are characterized by low-chlorinity and high volatile content. Also, previous workers demonstrated in uniaxial deformation tests that smectite partially dehydrates with increasing effective stress. To shed light on this process we performed uniaxial deformation experiments on smectite-rich samples from the Nankai and Costa Rica subduction zones. Experiments were conducted at temperatures of up to 100°C under constant rate of strain and effective stresses of up to ~100MPa. Fluids expelled during the experiments were analyzed for major and minor element content. The fluids are characterized by fluid-freshening and increasing volatile content that starts at ~1.3MPa effective stress. During the course of the experiments the smectite interlayer water content decreases from 27 wt-% to 20 wt-%. The released interlayer water comprises up to 17% of the total fluid volume released from the consolidating sediment. The onset of fluid freshening is characterized by a change in deformation behavior of the samples. The porosity decrease with increasing effective stress is smaller at effective stresses greater 1.3MPa. We propose that dehydration of the low permeable smectite leads to excess pore pressures in the sample, which causes a load transfer from the solid phase to the pore fluid.

Cyst fluid telomerase activity predicts the histologic grade of cystic neoplasms of the pancreas

PubMed Central

Hata, Tatsuo; Molin, Marco Dal; Suenaga, Masaya; Yu, Jun; Pittman, Meredith; Weiss, Matthew; Canto, Marcia I.; Wolfgang, Christopher; Lennon, Anne Marie; Hruban, Ralph H; Goggins, Michael

2016-01-01

Purpose Pancreatic cysts frequently pose clinical dilemmas. On one hand, cysts with high-grade dysplasia offer opportunities for cure, on the other hand, those with low-grade dysplasia are easily over treated. Cyst fluid markers have the potential to improve the evaluation of these cysts. Since telomerase activity is commonly activated in malignant cells, we evaluated the diagnostic performance of cyst fluid telomerase activity measurements for predicting histologic grade. Experimental design Telomerase activity was measured using telomerase repeat amplification with digital-droplet PCR in surgically-aspirated cyst fluid samples from 219 patients who underwent pancreatic resection for a cystic lesion (184, discovery, 35 validation) and 36 patients who underwent endoscopic ultrasound fine needle aspiration. Methodological and clinical factors associated with telomerase activity were examined. Results Telomerase activity was reduced in samples that had undergone prior thawing. Among 119 samples not previously thawed, surgical cyst fluids from cystic neoplasms with high-grade dysplasia +/− associated invasive cancer had higher telomerase activity (median [interquartile range], 1158 [295.9–13033] copies/μL of cyst fluid than those without (19.74 [2.58–233.6] copies/μL) (P < 0.001). Elevated cyst fluid telomerase activity had a diagnostic accuracy for invasive cancer/high-grade dysplasia of 88.1% (discovery), 88.6% (validation), and 88.2% (merged). Among cysts classified preoperatively as having “worrisome features”, cyst fluid telomerase activity had high diagnostic performance (sensitivity 73.7%, specificity 90.6%, accuracy, 86.1%). In multivariate analysis, telomerase activity independently predicted the presence of invasive cancer/high-grade dysplasia. Conclusion Cyst fluid telomerase activity can be a useful predictor of the neoplastic grade of pancreatic cysts. PMID:27230749

Detection Times of Diazepam, Clonazepam, and Alprazolam in Oral Fluid Collected From Patients Admitted to Detoxification, After High and Repeated Drug Intake.

PubMed

Nordal, Kristin; Øiestad, Elisabeth L; Enger, Asle; Christophersen, Asbjorg S; Vindenes, Vigdis

2015-08-01

Clonazepam, diazepam, and alprazolam are benzodiazepines with sedative, anticonvulsant, and anxiolytic effects, but their prevalence in drug abuse and drug overdoses has long been recognized. When detection times for psychoactive drugs in oral fluid are reported, they are most often based on therapeutic doses administered in clinical studies. Repeated ingestions of high doses, as seen after drug abuse, are however likely to cause positive samples for extended time periods. Findings of drugs of abuse in oral fluid collected from imprisoned persons might lead to negative sanctions, and the knowledge of detection times of these drugs is thus important to ensure correct interpretation. The aim of this study was to investigate the time window of detection for diazepam, clonazepam, and alprazolam in oral fluid from drug addicts admitted to detoxification. Twenty-five patients with a history of heavy drug abuse admitted to a detoxification ward were included. Oral fluid was collected daily in the morning and the evening and urine samples every morning for 10 days, using the Intercept device. Whole blood samples were collected if the patient accepted. The cutoff levels in oral fluid were 1.3 ng/mL for diazepam, N-desmethyldiazepam, and 7-aminoclonazepam and 1 ng/mL for clonazepam and alprazolam. In urine, the cutoff levels for quantifications were 30 ng/mL for alprazolam, alpha-OH-alprazolam, and 7-aminoclonazepam, 135 ng/mL for N-desmethyldizepam, and 150 ng/mL for 3-OH-diazepam and for all the compounds, the cutoff for the screening analyses were 200 ng/mL. The maximum detection times for diazepam and N-desmethyldiazepam in oral fluid were 7 and 9 days, respectively. For clonazepam and 7-aminoclonazepam, the maximum detection times in oral fluid were 5 and 6 days, respectively. The maximum detection time for alprazolam in oral fluid was 2.5 days. New ingestions were not suspected in any of the cases, because the corresponding concentrations in urine were decreasing. Results from blood samples revealed that high doses of benzodiazepines had been ingested before admission, and explains the longer detection times in oral fluids than reported previously after intake of therapeutic doses of these drugs. This study has shown that oral fluid might be a viable alternative medium to urine when the abuse of benzodiazepines is suspected.

Tracking Spatial and Temporal Changes in Microbial Metabolic Potential and Gene Expression Patterns Across Geochemical Gradients at Axial Seamount

NASA Astrophysics Data System (ADS)

Fortunato, C. S.; Butterfield, D. A.; Larson, B.; Algar, C. K.; Huber, J. A.

2016-12-01

Microbial communities living both near and within the subseafloor are important players in the biogeochemical cycling of the deep ocean. To better understand the metabolic and gene expression patterns of these understudied communities, we collected low-temperature diffuse fluids for metagenomic, metatranscriptomic, and geochemical analyses from Axial Seamount, an active submarine volcano off the coast of Oregon, USA in 2013-2015. In April of 2015 Axial Seamount erupted along its north rift, five months before the 2015 samples were collected. This study thus provides both spatial and temporal analysis of subseafloor microbial communities pre and post eruption. The time series for this study focused on three vents at the south end of the caldera: Anemone, Marker 33, and Marker 113. Chemistry data shows that at each vent there are different geochemical conditions and thus a potentially different microbial metabolic profile. Anemone has the most oxidizing conditions and the highest abundance and expression of sulfur oxidation genes, attributed to both SUP05 and Epsilonproteobacteria. The most reducing conditions were observed at Marker 113, the site with the lowest oxygen concentration and where methanogenesis was the dominant metabolism, with 18.5% of all annotated transcripts attributed to methanogenesis. Although individual vents were metabolically distinct, there was very little variation in the overall taxonomic and metabolic profiles of each vent across years, even after the 2015 eruption. A diffuse fluid sample taken from the North Rift Zone post eruption showed similar community taxonomy to both Anemone and Marker 33; analyses of the metabolic potential and gene expression at this site is ongoing and will act as a comparison between the communities of the time series vents and those that were closer to the eruption site. Together, these chemical and `omic datasets reveal a dynamic microbial community at each vent, taxonomically diverse and involved in a wide array of biogeochemical transformations. Results are being used to model the functional dynamics and fluxes of vent communities to more closely link microbiological productivity at hydrothermal systems to deep-sea biogeochemical processes and will be also used to inform future projects using instrumentation on the cabled array at Axial Seamount.

Fluid sample collection and distribution system. [qualitative analysis of aqueous samples from several points

NASA Technical Reports Server (NTRS)

Brooks, R. L. (Inventor)

1979-01-01

A multipoint fluid sample collection and distribution system is provided wherein the sample inputs are made through one or more of a number of sampling valves to a progressive cavity pump which is not susceptible to damage by large unfiltered particles. The pump output is through a filter unit that can provide a filtered multipoint sample. An unfiltered multipoint sample is also provided. An effluent sample can be taken and applied to a second progressive cavity pump for pumping to a filter unit that can provide one or more filtered effluent samples. The second pump can also provide an unfiltered effluent sample. Means are provided to periodically back flush each filter unit without shutting off the whole system.

Analysis of synovial fluid of the Capybara's stifle joints.

PubMed

Brombini, Giovanna C; Rahal, Sheila C; Bergamini, Bruno C S; Lopes, Raimundo S; Santos, Ivan F C; Schimming, Bruno C

2017-03-01

Although normal synovial fluid has been well characterized in domestic animals such as dogs, cats, horses, and cows, the available information on larger rodents is scarce. The purpose of the study was to analyze the physical, chemical, and cytologic characteristics of the synovial fluid in stifle joints of Capybaras. Five free-ranging adult female Capybaras (Hydrochoerus hydrochaeris), weighing from 37 to 56 kg were used. Synovial fluid was obtained by aspiration of 10 stifle joints. Samples were analyzed for physical, chemical, and cytologic properties. Spontaneous clotting was negative in 9 samples. Most synovial fluids had pH 8, and protein concentrations ranged from 1.6 to 3.6 g/dL. The mucin clot test was good in all 6 samples that were tested. Nucleated cell counts ranged from 140 to 508 cells/μL. Relative differential leukocyte counts demonstrated a predominance of mononuclear cells (97.6%), including 76.2% undifferentiated mononuclear cells, 18.1% macrophages, and 3.66% lymphocytes. Polymorphonuclear cells included 1.83% neutrophils and 0.2% eosinophils. The synovial stifle joint fluid of healthy free-ranging adult Capybaras is clear, colorless, viscous, and with chemical features and cytologic findings similar to those seen in domestic animals. © 2017 American Society for Veterinary Clinical Pathology.

Microbial Life in Ridge Flank Crustal Fluids at Baby Bare Seamount, Juan de Fuca Ridge

NASA Astrophysics Data System (ADS)

Huber, J. A.; Johnson, H. P.; Butterfield, D. A.; Baross, J. A.

2005-12-01

To determine the microbial community diversity within old oceanic crust, a novel sampling strategy was used to collect crustal fluids at Baby Bare Seamount, a 3.5 Ma old outcrop located in the northeast Pacific Ocean on the eastern flank of the Juan de Fuca Ridge. Stainless steel probes were driven directly into the igneous ocean crust to obtain samples of ridge flank crustal fluids. Genetic signatures and enrichment cultures of microorganisms demonstrate that these crustal fluids host a microbial community composed of species indigenous to the subseafloor, including anaerobic thermophiles, and species from other deep-sea habitats, such as seawater and sediments. Evidence using molecular techniques indicates the presence of a relatively small but active microbial population, dominated by bacteria. The microbial community diversity found in the crustal fluids may indicate habitat variability in old oceanic crust, with inputs of nutrients from seawater, sediment pore-water fluids and possibly hydrothermal sources. This report further supports the presence of an indigenous microbial community in ridge flank crustal fluids and advances our understanding of the potential physiological and phylogenetic diversity of this community.

Comparison of synovial fluid culture and 16S rRNA PCR in dogs with suspected septic arthritis.

PubMed

Scharf, V F; Lewis, D D; Wellehan, J F; Wamsley, H L; Richardson, R

2015-06-01

To prospectively compare the sensitivity and specificity of 16S rRNA PCR with culture for identifying the causative organism in synovial fluid obtained from dogs with suspected septic arthritis. Synovial fluid cytology, PCR analysis and aerobic, anaerobic and Mycoplasma culture of samples from the affected joints of 18 dogs presenting with suspected septic arthritis were performed. Synovial fluid samples from the corresponding contralateral joints of 7 dogs were also analysed as negative controls. There was no significant difference between the sensitivity of bacterial detection via culture (63.2%) versus PCR (73.7%) of synovial fluid (P=0.728) or between culture and combined PCR and culture (89.5%) of synovial fluid (P=0.124). The specificity of PCR (42.9%) was significantly lower than culture specificity (100%) (P=0.07). Although 16S PCR may hold potential as an ancillary diagnostic test for identifying the causative organism in dogs with septic arthritis, our study failed to demonstrate improved accuracy compared with traditional synovial fluid culture. © 2015 Australian Veterinary Association.

Major- and minor-metal composition of three distinct solid material fractions associated with Juan de Fuca hydrothermal fluids (northeast Pacific), and calculation of dilution fluid samples

USGS Publications Warehouse

Hinkley, T.K.; Seeley, J.L.; Tatsumoto, M.

1988-01-01

Three distinct types of solid material are associated with each sample of the hydrothermal fluid that was collected from the vents of the Southern Juan de Fuca Ridge. The solid materials appear to be representative of deposits on ocean floors near mid-ocean ridges, and interpretation of the chemistry of the hydrothermal solutions requires understanding of them. Sr isotopic evidence indicates that at least two and probably all three of these solid materials were removed from the solution with which they are associated, by precipitation or adsorption. This occurred after the "pure" hydrothermal fluid was diluted and thoroughly mixed with ambient seawater. The three types of solid materials, are, respectively, a coarse Zn- and Fe-rich material with small amounts of Na and Ca; a finer material also rich in Zn and Fe, but with alkali and alkaline-earth metals; and a scum composed of Ba or Zn, with either considerable Fe or Si, and Sr. Mineral identification is uncertain because of uncertain anion composition. Only in the cases of Ba and Zn were metal masses greater in solid materials than in the associated fluids. For all other metals measured, masses in fluids dwarf those in solids. The fluids themselves contain greater concentrations of all metals measured, except Mg, than seawater. We discuss in detail the relative merits of two methods of determining the mixing proportions of "pure" hydrothermal solution and seawater in the fluids, one based on Sr isotopes, and another previously used method based on Mg concentrations. Comparison of solute concentrations in the several samples shows that degree of dilution of "pure" hydrothermal solutions by seawater, and amounts of original solutes that were removed from it as solid materials, are not related. There is no clear evidence that appreciable amounts of solid materials were not conserved (lost) either during or prior to sample collection. ?? 1988.

Reduction of hexavalent chromium by fasted and fed human gastric fluid. I. Chemical reduction and mitigation of mutagenicity.

PubMed

De Flora, Silvio; Camoirano, Anna; Micale, Rosanna T; La Maestra, Sebastiano; Savarino, Vincenzo; Zentilin, Patrizia; Marabotto, Elisa; Suh, Mina; Proctor, Deborah M

2016-09-01

Evaluation of the reducing capacity of human gastric fluid from healthy individuals, under fasted and fed conditions, is critical for assessing the cancer hazard posed by ingested hexavalent chromium [Cr(VI)] and for developing quantitative physiologically-based pharmacokinetic models used in risk assessment. In the present study, the patterns of Cr(VI) reduction were evaluated in 16 paired pre- and post-meal gastric fluid samples collected from 8 healthy volunteers. Human gastric fluid was effective both in reducing Cr(VI), as measured by using the s-diphenylcarbazide colorimetric method, and in attenuating mutagenicity in the Ames test. The mean (±SE) Cr(VI)-reducing ability of post-meal samples (20.4±2.6μgCr(VI)/mL gastric fluid) was significantly higher than that of pre-meal samples (10.2±2.3μgCr(VI)/mL gastric fluid). When using the mutagenicity assay, the decrease of mutagenicity produced by pre-meal and post-meal samples corresponded to reduction of 13.3±1.9 and 25.6±2.8μgCr(VI)/mL gastric fluid, respectively. These data are comparable to parallel results conducted by using speciated isotope dilution mass spectrometry. Cr(VI) reduction was rapid, with >70% of total reduction occurring within 1min and 98% of reduction is achieved within 30min with post-meal gastric fluid at pH2.0. pH dependence was observed with decreasing Cr(VI) reducing capacity at higher pH. Attenuation of the mutagenic response is consistent with the lack of DNA damage observed in the gastrointestinal tract of rodents following administration of ≤180ppm Cr(VI) for up to 90days in drinking water. Quantifying Cr(VI) reduction kinetics in the human gastrointestinal tract is necessary for assessing the potential hazards posed by Cr(VI) in drinking water. Copyright © 2016 The Authors. Published by Elsevier Inc. All rights reserved.

Early Jurassic clay authigenesis in the Central Appalachian Valley and Ridge province; infiltration of surface-derived fluids during Pangean rifting

NASA Astrophysics Data System (ADS)

Lynch, E. A.; van der Pluijm, B.; Vennemann, T. W.

2017-12-01

The eastern margin of North America has a protracted and intricate tectonic history. The terminal collision of Gondwana and Laurentia in the late Paleozoic formed the Appalachian mountain belt, a trans-continental orogen that persisted for almost 100 million years until Mesozoic break-up of the supercontinent Pangea. A host of studies have targeted the evolution and migration of fluids through Appalachian crust in an effort to understand how fluid promotes mass and heat redistribution, and mediates crustal deformation, particularly during the assembly of Pangea. Folded clay units from the Central Appalachian Valley and Ridge province were sampled for stable and radiogenic isotope analysis. Separation of samples into different grain-size fractions characterizes detrital (host) and authigenic (neomineralized) clays. Stable H-isotope compositions reveal a systematic pattern with varying proportions of illite polytypes—the finer, younger fraction is D-depleted compared to the coarser, primarily detrital fraction. For each individual location, the H-isotopic composition of the fluid from which the authigenic population was grown is calculated. δDVSMOW of these fluids has a range from -77 to -52 ± 2 ‰, consistent with a surface-derived fluid source. The notably negative values for several samples indicates a meteoric composition of moderate to high elevation origin, suggesting that they are not connate waters, but instead preserve infiltration of fluids due to fracture-induced permeability. Key to this interpretation is 40Ar/39Ar-dating of a subset of these samples that reveals a post-orogenic age for authigenic clay mineralization in the Early Jurassic ( 180 Ma). These ages are evidence that surface fluid infiltration was unrelated to the Appalachian orogeny, but coeval with (upper) crustal extension from the initial break-up of Pangea and the emplacement of the Central Atlantic Magmatic Province.

In search of ancient biomarkers: Using femtosecond - Laser Desorption Post Ionization - Mass Spectrometry (fs-LDPI-MS) to map organic compounds within ca. 2.7 Ga samples from the Abitibi greenstone belt, Ontario, Canada

NASA Astrophysics Data System (ADS)

Pasterski, M. J.; Barry, G.; Hanley, L.; Kenig, F. P. H.

2016-12-01

One of the major challenges within the field of organic geochemistry is to determine whether an observed biomarker signature was emplaced during sedimentation (indigenous), after sedimentation via the post-depositional migration of fluids (non-indigenous), or during sampling, storage, or analysis (contaminant). Current geochemical techniques (e.g. gas chromatography-mass spectrometry, GC-MS and GCxGC-MS) can effectively determine the composition and structure of the organic constituents of a sample. However, because of the multiple preparatory steps necessary prior to GC-MS analysis (sample crushing, solvent extraction, organic fraction separation) it is impossible to precisely determine the spatial relationship between the host sample and the organic molecules within. We used an MS imaging method developed by Prof. Luke Hanley at the University of Illinois at Chicago, femtosecond-laser desorption post ionization-MS (fs-LDPI-MS), to map the organics within previously characterized ca.2.7 billion year old (Ga) metasediments from the Abitibi greenstone belt near Timmins, ON, Canada. We then compared the MS images to petrographic observations that displayed the distribution of mineral species with well constrained mineralization ages as well as fluid inclusions within the samples. Fluid inclusions are formed during mineralization and have the ability to remain intact over long timescales (up to billions of years), protecting the fluids inside from the introduction of non-indigenous and contaminant biomarkers. Although migrating post-depositional fluids can remineralize sediments, fluid inclusions associated with secondary additions are focused along grain boundaries and microfractures (secondary inclusions), thus, inclusions which are located within grain boundaries can be considered primary and the age of their formation can be determined relative to the host rock. Preliminary results indicate that previously observed biomarkers may be linked to a series of hydrothermal events which occurred regionally ca. 2.64 Ga.

USE OF MOLECULAR PROBES TO ASSESS GEOGRAPHIC DISTRIBUTION OF PFIESTERIA SPECIES. (R827084)

EPA Science Inventory

We have developed multiple polymerase chain reaction (PCR)-based methods for the
detection of Pfiesteria sp. in cultures and environmental samples. More than 2,100 water and
sediment samples from estuarine sites of the U.S. Atlantic and gulf coasts were assayed for the
p...

Influence of tree spatial pattern and sample plot type and size on inventory

Treesearch

John-Pascall Berrill; Kevin L. O' Hara

2012-01-01

Sampling with different plot types and sizes was simulated using tree location maps and data collected in three even-aged coast redwood (Sequoia sempervirens) stands selected to represent uniform, random, and clumped spatial patterns of tree locations. Fixed-radius circular plots, belt transects, and variable-radius plots were installed by...

46 CFR 161.006-6 - Procedure for approval.

Code of Federal Regulations, 2010 CFR

2010-10-01

... satisfactory or what corrections appear necessary and then he may proceed with the construction of the pre-approval sample in accordance therewith. The pre-approval sample, together with four copies of the plans... Commander of the Coast Guard District in which the factory is located for inspection and tests. The cost of...

46 CFR 164.006-4 - Inspection and testing.

Code of Federal Regulations, 2010 CFR

2010-10-01

... the Coast Guard. (b) Smoke tests. (1) A sample of each thickness submitted shall be tested for smoke... observations shall be made at intervals not greater than five minutes during the one-hour period of test. (2... integrity tests. (1) A sample of each thickness submitted shall be tested for fire resistance and integrity...

Pericardial fluid is suitable as an alternative specimen for the measurement of β-hydroxybutyrate within 96 h after death.

PubMed

Mizutani, Tatsushi; Yoshimoto, Takashi; Ishii, Akira

2018-05-21

We examined postmortem β-hydroxybutyrate (BHB) levels in the body fluids obtained from 253 forensic autopsy cases whose causes of death were determined. Postmortem changes of BHB levels according to postmortem intervals (PMI) in various body fluids (plasma, urine, vitreous humor, and pericardial fluids) were investigated to determine appropriate alternative specimens as plasma samples. Our study has indicated the following points: 1) the BHB levels in plasma specimens from three sampling sites showed no significant differences, 2) postmortem changes of BHB levels in plasma and pericardial fluids could be negligible within 96 h PMI, while urine and vitreous humor BHB levels showed postmortem changes, and 3) pericardial fluid would thus be most suitable as an alternative to plasma in postmortem BHB level. We have also proposed that BHB levels could be applicable for the diagnosis of metabolic disorders in forensic autopsy. Copyright © 2018 Elsevier B.V. All rights reserved.

Dioxin-like biological activity of organic extracts from sediments and fish livers sampled along the Israeli Mediterranean and Red Sea coasts.

PubMed

Yudkovski, Yana; Herut, Barak; Shefer, Edna; Tom, Moshe

2015-09-15

This study provides, for the first time, a baseline evaluation of dioxin-like biological activity in sediments and fish sampled in- and adjacent to anchorages along the Mediterranean and Red Sea coasts of Israel. It indicates the effect of past pollution, still present in the sediments of older Israeli harbors, with putative contribution of still existing sources of pollution. A commercial reporter gene bioassay was used to evaluate the biological activity of dioxin-like compounds extracted from the samples. HRGC/HRMS analysis of several samples contributed a profile of dioxin-like compounds in sediments and fish. The results point out 1,2,3,4,6,7,8-HeptaCDD, 2,3,4,6,7,8-HexaCDF, 1,2,3,4,6,7,8-HeptaCDF, РСВ-126 and РСВ-118 as major contributors to the dioxin-like activity in sediments. It indicates polychlorinated biphenyls non-selective absorption in fish livers, in contrary to a biased accumulation of poorly chlorinated and more potent dibenzodioxins and dibenzofurans. Copyright © 2015 Elsevier Ltd. All rights reserved.

Next-Generation Sequencing of an 88-Year-Old Specimen of the Poorly Known Species Liagora japonica (Nemaliales, Rhodophyta) Supports the Recognition of Otohimella gen. nov.

PubMed Central

Suzuki, Masahiro; Segawa, Takahiro; Mori, Hiroshi; Akiyoshi, Ayumi; Ootsuki, Ryo; Kurihara, Akira; Sakayama, Hidetoshi; Kitayama, Taiju; Abe, Tsuyoshi; Kogame, Kazuhiro; Kawai, Hiroshi; Nozaki, Hisayoshi

2016-01-01

Liagora japonica is a red algal species distributed in temperate regions of Japan. This species has not been collected from its type locality on the Pacific coast of Japan since 1927 and seems to have become extinct in this area. For molecular characterization of L. japonica, we extracted DNA from the topotype material of L. japonica collected in 1927, analyzed seven genes using Illumina next-generation sequencing, and compared these data with sequences from modern samples of similar red algae collected from the Japan Sea coast of Japan. Both morphological and molecular data from modern samples and historical specimens (including the lectotype and topotype) suggest that the specimens from the Pacific and Japan Sea coasts of Japan should be treated as a single species, and that L. japonica is phylogenetically separated from the genus Liagora. Based on the phylogenetic results and examination of reproductive structures, we propose Otohimella japonica gen. et comb. nov., characterized morphologically by diffuse carposporophytes, undivided carposporangia, and involucral filaments initiated only from the cortical cell on the supporting cell. PMID:27388436

A checklist of land snails from the west coast islands of Sabah, Borneo (Mollusca, Gastropoda)

PubMed Central

Phung, Chee-Chean; Yu, Fred Tuh Yit; Liew, Thor-Seng

2017-01-01

Abstract Sabah, situated in one of the world’s biodiversity hotspots, has the largest number of islands in Malaysia with more than 500 of various sizes and degrees of isolation. However, information on the islands’ biodiversity is limited. This study provides an up-to-date checklist of land snail species found on 24 west coast islands in Sabah. A total of 67 species (nearly 20% of the total number of land snail species in the state) representing 37 genera and 19 families is enumerated based on systematic field surveys of 133 sampling plots, BORNEENSIS database records and species checklists published between 2000 and 2016. The number of species on the islands ranges from four to 29. Labuan Island has the highest number of species (29), followed by Tiga Island (25), Mantanani Besar Island (24) and Gaya Island (23). However, the populations of some land snail species may have declined as several previously recorded species on the islands were not found in a recent systematic field sampling. This checklist is provided as a baseline inventory for future island land snail studies and to better inform biodiversity conservation plans of marine parks and other islands on the Sabah west coast. PMID:28769672

DNA damage in marine rock oyster (Saccostrea Cucullata) exposed to environmentally available PAHs and heavy metals along the Arabian Sea coast.

PubMed

Sarker, Subhodeep; Vashistha, Deepti; Saha Sarker, Munmun; Sarkar, A

2018-04-30

Molecular biomarkers are used world wide for quick assessment of the immediate effect of environmental pollution on marine ecosystems. Recently, we evaluated oxidative stress responses of marine rock oyster, Saccostrea cucullata impacted due to polycyclic aromatic hydrocarbons (PAHs) accumulated in their tissues at a few sampling sites along the coast of Goa around the region of the Arabian sea coast, India (Sarkar et al., 2017). Using a combination of partial alkaline unwinding and comet assays, we now report a comprehensive study on the impairment of DNA integrity (DI) in S. cucullata due to exposure to environmentally available PAHs and also heavy metals (Pb, Cd, Cu, Fe and Mn) along the Arabian Sea coast, Goa, India exclusively around the entire coast of Goa. First, we determined significant correlation between DI in S. cucullata and the extent of exposure to and bioaccumulation of different PAH compounds including 2-3 aromatic ring PAHs (R 2 , 0.95), 4-6 aromatic ring PAHs (R 2 , 0.85), oxygenated-PAHs (oxy-PAHs, R 2 , 0.84) and total PAHs (t-PAHs, R 2 , 0.98). Second, we observed dose-dependent decrease in DI in S. cucullata with increasing concentrations of different PAH components in oyster tissues. We substantiated our field observations with appropriate laboratory controls using benzo[a]pyrene (BaP). Third, we performed stepwise multiple regression analyses of different water quality parameters including pH, salinity, temperature, dissolved oxygen (DO), biochemical oxygen demand (BOD), nitrite (NO 2 ), nitrate (NO 3 ), phosphate (PO 4 ), turbidity and also t-PAH-biota, t-PAH-water with DI as the dependent variable. Among all these parameters, only four parameters such as t-PAH-biota in combination with DO, BOD and NO 2 showed significant correlation (R¯ 2 = 0.95) with loss in DI in S. cucullata. Based on these results, we created a map indicating the percentage of DNA damage in S. cucullata exposed to PAHs and heavy metals at each sampling location along the west coast of India around Goa, India. Copyright © 2018 Elsevier Inc. All rights reserved.

Flow through in situ reactors with suction lysimeter sampling capability and methods of using

DOEpatents

Radtke, Corey W [Idaho Falls, ID; Blackwelder, D Brad [Blackfoot, ID; Hubbell, Joel M [Idaho Falls, ID

2009-11-17

An in situ reactor for use in a geological strata includes a liner defining a centrally disposed passageway and a sampling conduit received within the passageway. The sampling conduit may be used to receive a geological speciment derived from geological strata therein and a lysimeter is disposed within the sampling conduit in communication with the geological specimen. Fluid may be added to the geological specimen through the passageway defined by the liner, between an inside surface of the liner and an outside surface of the sampling conduit. A distal portion of the sampling conduit may be in fluid communication with the passageway.

Apparatus for continuously referenced analysis of reactive components in solution

DOEpatents

Bostick, William D.; Denton, Mark S.; Dinsmore, Stanley R.

1981-01-01

A continuously referenced apparatus for measuring the concentration of a reactive chemical species in solution comprises in combination conduit means for introducing a sample solution, means for introducing one or more reactants into a sample solution, a reaction zone in fluid communication with said conduit means wherein a first chemical reaction occurs between said species and reactants, and a stream separator disposed within the conduit means for separating the sample solution into a sample stream and a reference stream. An enzymatic reactor is disposed in fluid communication with only the sample stream wherein a second reaction takes place between the said reactants, species, and reactor enzymes causing the consumption or production of an indicator species in just the sample stream. Measurement means such as a photometric system are disposed in communication with the sample and reference streams, and the outputs of the measurement means are compared to provide a blanked measurement of the concentration of indicator species. A peristaltic pump is provided to equalize flow through the apparatus by evacuation. The apparatus is particularly suitable for measurement of isoenzymes in body tissues or fluids.

[Sample preparation and bioanalysis in mass spectrometry].

PubMed

Bourgogne, Emmanuel; Wagner, Michel

2015-01-01

The quantitative analysis of compounds of clinical interest of low molecular weight (<1000 Da) in biological fluids is currently in most cases performed by liquid chromatography-mass spectrometry (LC-MS). Analysis of these compounds in biological fluids (plasma, urine, saliva, hair...) is a difficult task requiring a sample preparation. Sample preparation is a crucial part of chemical/biological analysis and in a sense is considered the bottleneck of the whole analytical process. The main objectives of sample preparation are the removal of potential interferences, analyte preconcentration, and converting (if needed) the analyte into a more suitable form for detection or separation. Without chromatographic separation, endogenous compounds, co-eluted products may affect a quantitative method in mass spectrometry performance. This work focuses on three distinct parts. First, quantitative bioanalysis will be defined, different matrices and sample preparation techniques currently used in bioanalysis by mass spectrometry of/for small molecules of clinical interest in biological fluids. In a second step the goals of sample preparation will be described. Finally, in a third step, sample preparation strategies will be made either directly ("dilute and shoot") or after precipitation.

Infrared trace element detection system

DOEpatents

Bien, F.; Bernstein, L.S.; Matthew, M.W.

1988-11-15

An infrared trace element detection system includes an optical cell into which the sample fluid to be examined is introduced and removed. Also introduced into the optical cell is a sample beam of infrared radiation in a first wavelength band which is significantly absorbed by the trace element and a second wavelength band which is not significantly absorbed by the trace element for passage through the optical cell through the sample fluid. The output intensities of the sample beam of radiation are selectively detected in the first and second wavelength bands. The intensities of a reference beam of the radiation are similarly detected in the first and second wavelength bands. The sensed output intensity of the sample beam in one of the first and second wavelength bands is normalized with respect to the other and similarly, the intensity of the reference beam of radiation in one of the first and second wavelength bands is normalized with respect to the other. The normalized sample beam intensity and normalized reference beam intensity are then compared to provide a signal from which the amount of trace element in the sample fluid can be determined. 11 figs.

Infrared trace element detection system

DOEpatents

Bien, Fritz; Bernstein, Lawrence S.; Matthew, Michael W.

1988-01-01

An infrared trace element detection system including an optical cell into which the sample fluid to be examined is introduced and removed. Also introduced into the optical cell is a sample beam of infrared radiation in a first wavelength band which is significantly absorbed by the trace element and a second wavelength band which is not significantly absorbed by the trace element for passage through the optical cell through the sample fluid. The output intensities of the sample beam of radiation are selectively detected in the first and second wavelength bands. The intensities of a reference beam of the radiation are similarly detected in the first and second wavelength bands. The sensed output intensity of the sample beam in one of the first and second wavelength bands is normalized with respect to the other and similarly, the intensity of the reference beam of radiation in one of the first and second wavelength bands is normalized with respect to the other. The normalized sample beam intensity and normalized reference beam intensity are then compared to provide a signal from which the amount of trace element in the sample fluid can be determined.

Analysis of lactate concentrations in canine synovial fluid.

PubMed

Proot, J L J; de Vicente, F; Sheahan, D E

2015-01-01

To report synovial fluid lactate concentrations in normal and pathological canine joints. Controlled, prospective study. Lactate was measured in synovial fluid using a hand-held meter and the rest of the fluid was sent to a commercial laboratory for analysis. Samples were divided into four groups; group 1: control, group 2: osteoarthritis, group 3: immune-mediated inflammatory arthritis, and group 4: septic arthritis. Statistical analysis was performed to compare lactate concentrations between the four groups and to examine the predictive value of lactate in the diagnosis of septic arthritis. A correlation was sought between synovial fluid lactate and synovial fluid total nucleated cell count and total protein. Seventy-four samples were investigated from 55 dogs. Statistical analysis found that lactate concentrations were significantly higher in the septic arthritis group than in each of the other three groups. No significant correlation could be found between synovial fluid lactate concentrations and synovial fluid total nucleated cell count or synovial fluid total protein. Lactate concentration was found to be a useful predictor of septic arthritis, with a low concentration pointing towards exclusion rather than a high concentration to the diagnosis of septic arthritis. Synovial fluid lactate concentration is not a good marker for osteoarthritis or immune-mediated inflammatory arthritis, but it is significantly increased in septic arthritis and could help the clinician in ruling out this condition in a quick and cost-effective way.

Investigation of origin for seawater intrusion using geophysical well logs and absolute ages of volcanic cores in the eastern part of Jeju Island

NASA Astrophysics Data System (ADS)

Hwang, Seho; Shin, Jehyun

2010-05-01

Jeju located in the southern extremity of Korea is volcanic island, one of best-known tourist attractions in Korea. Jeju Province operates the monitoring boreholes for the evaluation of groundwater resources in coastal area. Major rock types identified from drill cores are trachybasalt, acicular basalt, scoria, hyalocastite, tuff, unconsolidated U formation, and seoguipo formation and so on. Various conventional geophysical well loggings including radioactive logs (natural gamma log, dual neutron log, and gamma-gamma log), electrical log (or electromagnetic induction log), caliper log, fluid temperature/ conductivity log, and televiewer logs have been conducted to identify basalt sequences and permeable zone, and verify seawater intrusion in monitoring boreholes. The conductivity logs clearly show the fresh water-saline water boundaries, but we find it hard to identify the permeable zones because of the mixed groundwater within the boreholes. Temperature gradient logs are mostly related with lithologic boundaries and permeable zones intersected by boreholes of eastern coasts. The wide range of periodic electrical conductivity logging in the deeper depth of monitoring boreholes indicates the possibility of submarine groundwater discharge. However we did not clearly understand the origin of seawater intrusion in the eastern coast until now. So we analysis the electrical conductivity profiles, record of sea-level change and 40Ar/39Ar absolute ages of volcanic rock cores from twenty boreholes in east coast. From comparing absolute ages of volcanic rock cores and sea-level of their ages, we find that the almost ages of depth showing high salinity groundwater are about 100 Ka, and from 130Ka to about 180Ka. The former is after the interglacial period and the latter is illinoian. These results indicate that the abrupt raising of sea level after illinoian formed the regional coast, and the zone of present seawater intrusion also are above the depth of illinoin period. So we conclude that the origin of seawater intrusion in eastern coast is caused mainly by the sea-level change.

A survey of major east coast snowstorms, 1960-1983. Part 2: Case studies of eighteen storms

NASA Technical Reports Server (NTRS)

Kocin, P. J.; Uccellini, L. W.

1985-01-01

Snowfall, surface and upper air charts, and available satellite images are presented for eighteen major East Coast snowstorms that occurred between 1960 and 1983. The charts and descriptions of key fields are provided so that students, weather forecasters, and researchers alike can visualize how a large sample of major winter cyclones form and intensify. Although there are noted similarities in certain aspects of the surface and upper tropospheric development of the storms, significant case-to-case variability precludes the ability to effectively composite these weather systems.

Environmental Impact Research Program. The Use of Fertilizer To Enhance Transplants of the Seagrasses Zostera marina and Halodule wrightii.

DTIC Science & Technology

1987-08-01

throughout Florida, the Gulf Coast, and the U.S. Virgin Islands. These two species co-occur only along a narrow band of the middle Atlantic ...Thayer et al. 1984). Zostera dominates the temperate seagrass community on both the Atlantic and Pacific coasts, while Halodule occurs in the United States...C and allowed to dry to a constant weight. After drying, each 9 - tN.WVunEY .M .UrS, .m w sample was pulverized with a mortar and pestle to ensure

The negative effect of environmental geological conditions of some geo-archaeological sites of North Coast and Alexandria

NASA Astrophysics Data System (ADS)

Ibrahim, Hani; Kamh, Gamal

2005-12-01

Three geo-archaeological sites at the North Coast and Alexandria, namely, the Alexandria wall (El Shalalat Park site), Abu Soir temple, and Marina excavations, were investigated to determine the negative impact of a salty environmental condition. The monuments suffer from rock decay of different rates. The geo-archaeological sites were built mainly from oolitic limestone blocks (i.e., the Alexandria wall at the El Shalalat Park site and Abu Soir temple) or excavated on them (i.e., Marina excavations). Field inspection and a lab analysis were carried out to understand the weathering mechanism. Salt weathering criteria such as disintegration, pitting, scaling, exfoliation, and honeycomb are observed on the Alexandria wall and upper parts of the Abu Soir temple, while dangerous cracks are detected on the Marina excavation tombs. The petrographic study of the oolitic limestone samples shows that they consist mainly of oolities and drusy sparite as a cement (oolitic grainstone). Some oolities have quartz grains as nuclei. Hydrochemical analysis shows that the total dissolved salts of extracted solutions of the North Coast quarry samples range from 539 to 686 ppm and dramatically increase (i.e., ten times) for extracted solutions from monument samples, ranging from 5395 to 6880 ppm. The dominant cation is sodium while the dominant anion is chlorine. Acid insoluble residue analysis shows that the carbonate content ranges from 89.2% to 96.4% for fresh samples from quarries and from 9.2% to 94.8% for weathered monument samples. The weight loss of the quarry oolitic limestone samples range from 30.7% to 32.7% and its physical and mechanical properties become worse after being subjected to 15 cycles of a durability simulation soundness test (using a sodium sulphate solution). Our main recommendations are to use suitable grouting for binding the cracks, high durability reconstruction rocks, and suitable cleaning methods to remove salts from the monuments.

Modeling and comparative study of fluid velocities in heterogeneous rocks

NASA Astrophysics Data System (ADS)

Hingerl, Ferdinand F.; Romanenko, Konstantin; Pini, Ronny; Balcom, Bruce; Benson, Sally

2013-04-01

Detailed knowledge of the distribution of effective porosity and fluid velocities in heterogeneous rock samples is crucial for understanding and predicting spatially resolved fluid residence times and kinetic reaction rates of fluid-rock interactions. The applicability of conventional MRI techniques to sedimentary rocks is limited by internal magnetic field gradients and short spin relaxation times. The approach developed at the UNB MRI Centre combines the 13-interval Alternating-Pulsed-Gradient Stimulated-Echo (APGSTE) scheme and three-dimensional Single Point Ramped Imaging with T1 Enhancement (SPRITE). These methods were designed to reduce the errors due to effects of background gradients and fast transverse relaxation. SPRITE is largely immune to time-evolution effects resulting from background gradients, paramagnetic impurities and chemical shift. Using these techniques quantitative 3D porosity maps as well as single-phase fluid velocity fields in sandstone core samples were measured. Using a new Magnetic Resonance Imaging technique developed at the MRI Centre at UNB, we created 3D maps of porosity distributions as well as single-phase fluid velocity distributions of sandstone rock samples. Then, we evaluated the applicability of the Kozeny-Carman relationship for modeling measured fluid velocity distributions in sandstones samples showing meso-scale heterogeneities using two different modeling approaches. The MRI maps were used as reference points for the modeling approaches. For the first modeling approach, we applied the Kozeny-Carman relationship to the porosity distributions and computed respective permeability maps, which in turn provided input for a CFD simulation - using the Stanford CFD code GPRS - to compute averaged velocity maps. The latter were then compared to the measured velocity maps. For the second approach, the measured velocity distributions were used as input for inversely computing permeabilities using the GPRS CFD code. The computed permeabilities were then correlated with the ones based on the porosity maps and the Kozeny-Carman relationship. The findings of the comparative modeling study are discussed and its potential impact on the modeling of fluid residence times and kinetic reaction rates of fluid-rock interactions in rocks containing meso-scale heterogeneities are reviewed.

Synovial Fluid Response to Extensional Flow: Effects of Dilution and Intermolecular Interactions

PubMed Central

Haward, Simon J.

2014-01-01

In this study, a microfluidic cross-slot device is used to examine the extensional flow response of diluted porcine synovial fluid (PSF) samples using flow-induced birefringence (FIB) measurements. The PSF sample is diluted to 10× 20× and 30× its original mass in a phosphate-buffered saline and its FIB response measured as a function of the strain rate at the stagnation point of the cross-slots. Equivalent experiments are also carried out using trypsin-treated PSF (t-PSF) in which the protein content is digested away using an enzyme. The results show that, at the synovial fluid concentrations tested, the protein content plays a negligible role in either the fluid's bulk shear or extensional flow behaviour. This helps support the validity of the analysis of synovial fluid HA content, either by microfluidic or by other techniques where the synovial fluid is first diluted, and suggests that the HA and protein content in synovial fluid must be higher than a certain minimum threshold concentration before HA-protein or protein-protein interactions become significant. However a systematic shift in the FIB response as the PSF and t-PSF samples are progressively diluted indicates that HA-HA interactions remain significant at the concentrations tested. These interactions influence FIB-derived macromolecular parameters such as the relaxation time and the molecular weight distribution and therefore must be minimized for the best validity of this method as an analytical technique, in which non-interaction between molecules is assumed. PMID:24651529

Synovial fluid response to extensional flow: effects of dilution and intermolecular interactions.

PubMed

Haward, Simon J

2014-01-01

In this study, a microfluidic cross-slot device is used to examine the extensional flow response of diluted porcine synovial fluid (PSF) samples using flow-induced birefringence (FIB) measurements. The PSF sample is diluted to 10× 20× and 30× its original mass in a phosphate-buffered saline and its FIB response measured as a function of the strain rate at the stagnation point of the cross-slots. Equivalent experiments are also carried out using trypsin-treated PSF (t-PSF) in which the protein content is digested away using an enzyme. The results show that, at the synovial fluid concentrations tested, the protein content plays a negligible role in either the fluid's bulk shear or extensional flow behaviour. This helps support the validity of the analysis of synovial fluid HA content, either by microfluidic or by other techniques where the synovial fluid is first diluted, and suggests that the HA and protein content in synovial fluid must be higher than a certain minimum threshold concentration before HA-protein or protein-protein interactions become significant. However a systematic shift in the FIB response as the PSF and t-PSF samples are progressively diluted indicates that HA-HA interactions remain significant at the concentrations tested. These interactions influence FIB-derived macromolecular parameters such as the relaxation time and the molecular weight distribution and therefore must be minimized for the best validity of this method as an analytical technique, in which non-interaction between molecules is assumed.